BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035847
(523 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 315/744 (42%), Positives = 401/744 (53%), Gaps = 248/744 (33%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------ 60
MDLTNPDEC YA I Q+C KL NL LG QVHA L+V GV++C FLG
Sbjct: 1 MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60
Query: 61 ------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKA 104
MF+KM ERNVFSWT++M MY LG YEE + LFYL+++EGV +KA
Sbjct: 61 VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------ 158
CSELK++RVGKDVYDYM+SI FEGN+CVK +LDMFIKCGRM++A FEE +F
Sbjct: 121 CSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMW 180
Query: 159 ------------------------------------------SNLSLLKHGKEIHPHHLK 176
+NLSLL+HG+EIH + +K
Sbjct: 181 NIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK 240
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
++L+SDLLV NSL+D+YAKCR ++VA KF IKQ LVSWNAMLA +TG
Sbjct: 241 VEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLA----------VTG 290
Query: 237 FTQYGDGETALEFFSRM-----------------------------------------IQ 255
FTQYGDG+ ALEFF RM
Sbjct: 291 FTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNL 350
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF- 314
++++ NT+++ L AC+++ + GKEIH +++R + + +LI + G GS
Sbjct: 351 SNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG-RCGSIQ 409
Query: 315 ---------------VWNSLIDMYG---------------RCGAIQKN------------ 332
WN +I +YG R ++ N
Sbjct: 410 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 469
Query: 333 ------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE- 385
EGW+YF+MMK EY M+PA+EQY CMVDLL+RAGQF++TL F++KMPFEP++A
Sbjct: 470 HSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVW 529
Query: 386 ---------PCNPDIAEHAARHLFELEPLSSG---------------------------- 408
CNPD+AE+AAR+LFELEP SSG
Sbjct: 530 GSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 589
Query: 409 ---------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------- 443
K+HSF+ GDTSH L+ +IS K+ LY +IK+IGY+
Sbjct: 590 GVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDV 649
Query: 444 ----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
K CGHSEK+ALAFGLIST+ G+PLR+IKNLR+CGDCHS TK++SK EK R
Sbjct: 650 DEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEK----R 705
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
+IIM DNYRFHHFVDG CSCGDYW
Sbjct: 706 DIIMRDNYRFHHFVDGVCSCGDYW 729
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----- 59
N LL+ M+L+N + TVT C KL L G ++H +I CG++ C F+
Sbjct: 340 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 399
Query: 60 -------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ MP+R++ SW M+ +Y + G+ + VNLF
Sbjct: 400 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 213/660 (32%), Positives = 314/660 (47%), Gaps = 181/660 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELCAFL 59
+ + M L ++T A C L+ L G ++H + I + G L +
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408
Query: 60 GM----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDE 99
F + + ++ SW +M+ Y + G +EE + L ++
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
G+ ++ D + + + M S+ + N L CG++
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL---AACGQVRN----------- 514
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
LK GKEIH + L+ + +E V ++L+ Y+ C L+VA FS++ + +V WN
Sbjct: 515 ----LKLGKEIHGYVLR-NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWN 569
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
++++ A Q G AL+ M ++++ NT+++ L AC+++ +
Sbjct: 570 SIISACA------------QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMY 323
GKEIH +++R + + +LI + G GS WN +I +Y
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGR-CGSIQKSRRIFDLMPQRDLVSWNVMISVY 676
Query: 324 G---------------RCGAIQKN------------------EGWRYFEMMKKEYNMEPA 350
G R ++ N EGW+YF+MMK EY M+PA
Sbjct: 677 GMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 736
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLF 400
+EQY CMVDLL+RAGQF++TL F++KMPFEP++A CNPD+AE+AAR+LF
Sbjct: 737 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLF 796
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
ELEP SSG K+HSF+ GD
Sbjct: 797 ELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIS 463
TSH L+ +IS K+ LY +IK+IGY+ K CGHSEK+ALAFGLIS
Sbjct: 857 TSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLIS 916
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T+ G+PLR+IKNLR+CGDCHS TK++SK EK R+IIM DNYRFHHFVDG CSCGDYW
Sbjct: 917 TTAGTPLRIIKNLRVCGDCHSATKFISKVEK----RDIIMRDNYRFHHFVDGVCSCGDYW 972
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 160/435 (36%), Positives = 228/435 (52%), Gaps = 101/435 (23%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V+ N +LL SMDLTNPDEC YA I Q+C KL NL LG QVHA L+V GV++C FLG
Sbjct: 69 VLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGS 128
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-- 101
MF+KM ERNVFSWT++M MY LG YEE + LFYL+++EGV
Sbjct: 129 RLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188
Query: 102 --------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
+KACSELK++RVGKDVYDYM+SI FEGN+CVK +LDMFIKCGRM++A F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC----KFSK 209
EE +F KD +++V+ + +K + K C K S
Sbjct: 249 EEIEF------------------KDVFMWNIMVSG----YTSKGEFKKALKCISDMKLSG 286
Query: 210 IKQKHLVSWNAMLAGYALGGFREE------------------------ITGFTQYGDGET 245
+K V+WNA+++GYA G EE I G Q G
Sbjct: 287 VKPDQ-VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F +M+ ++PN+I+++ ++AC + + G+EIHGY ++
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK--------------- 390
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
++ L + V NSL+D Y +C +++ R F M+K + + + M+ A G
Sbjct: 391 VEELDSDLLVGNSLVDYYAKCRSVEVAR--RKFGMIK-----QTDLVSWNAMLAGYALRG 443
Query: 366 QFDDTLNFMKKMPFE 380
++ + + +M F+
Sbjct: 444 SHEEAIELLSEMKFQ 458
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 196/389 (50%), Gaps = 94/389 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVE---------LCAFLG---------MFEKMPERN 69
+F+ C +L N +G V+ +++ G E L F+ FE++ ++
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------------------YKACSE--- 107
VF W M+ Y G +++ + + GV ++ S+
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFL 315
Query: 108 ----LKDHRVGKDVYDYMIS------IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
LKD + + +I+ FE + ++ VL+ +K + +AS
Sbjct: 316 EMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-VKPNSITIASAV---SA 371
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+NLSLL+HG+EIH + +K ++L+SDLLV NSL+D+YAKCR ++VA KF IKQ LVS
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431
Query: 218 WNAMLAGYALGGFREE-----------------------ITGFTQYGDGETALEFFSRMI 254
WNAMLAGYAL G EE +TGFTQYGDG+ ALEFF RM
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314
M PNT ++SG LAAC QV+ KLGKEIHGYVLR+HI+LSTGVG ALIS+ G S
Sbjct: 492 SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS-GCDSL 550
Query: 315 ----------------VWNSLIDMYGRCG 327
VWNS+I + G
Sbjct: 551 EVACSVFSELSTRDVVVWNSIISACAQSG 579
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----- 59
N LL+ M+L+N + TVT C KL L G ++H +I CG++ C F+
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642
Query: 60 -------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ MP+R++ SW M+ +Y + G+ + VNLF
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 204/710 (28%), Positives = 299/710 (42%), Gaps = 211/710 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+ L+Q L PD+ T+ I C L G +VH ++ G+ A +G
Sbjct: 131 NLFTLMQQEGL-EPDK--FTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALI 187
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----- 101
+F+ M R+ SWT++ G Y GY +E + ++ ++ EGV
Sbjct: 188 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRI 247
Query: 102 -----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------- 149
AC L GK ++ ++ + + V + M+IKCG ++ A
Sbjct: 248 TYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECL 307
Query: 150 -----------------SGEFEEKDFSNLSLLKH------------------------GK 168
SG+ EE +LK GK
Sbjct: 308 PNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGK 367
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH +K D L SD+ N+L++ Y+K +K A F ++ ++ +VSW A++ GYA
Sbjct: 368 EIHARAVK-DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADC 426
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G + + F+ F +M+Q ++ N I+ VL AC+ K GKEIH V
Sbjct: 427 G--QVVESFST----------FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEV 474
Query: 289 LRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AI 329
++ I V AL+S+ +G+ T V WN+LI + G A+
Sbjct: 475 VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEAL 534
Query: 330 QK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
QK EG R F M+K+Y + P + Y CMVD+
Sbjct: 535 QKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDI 594
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
LARAG + + + MPF+PS+A C N +I E AA +LEP ++G
Sbjct: 595 LARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTY 654
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VHSF+AGD SH +I
Sbjct: 655 VSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIY 714
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+L L +IK +GY+ K C HSEKLA+A+GLIST P +P+RV
Sbjct: 715 SELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVS 774
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK++SK REII D +RFHHF +G CSCGDYW
Sbjct: 775 KNLRVCTDCHTATKFISKITG----REIIARDAHRFHHFKNGECSCGDYW 820
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/429 (22%), Positives = 170/429 (39%), Gaps = 112/429 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMP 66
Y + Q C K +L +G QVH H++ G++ ++ +F+K
Sbjct: 47 YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
++V SW M+ Y G +E NLF L+ EG + ACS G++
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------SGEFEEKDF 158
V+ ++ NA V ++ M+ KCG + A +G + E +
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226
Query: 159 SNLSL------------------------------LKHGKEIHPHHLKKDDLESDLLVNN 188
+ SL L+ GK+IH + + + SD+ V+
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA-QIVESEHHSDVRVST 285
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L Y KC +K A F + + +++WN M+ G G EE G
Sbjct: 286 ALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHG------------ 333
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F RM++ + P+ ++ +L+ACA+ G GKEIH ++ G
Sbjct: 334 MFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVK----------------DG 377
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
L + N+LI+MY + G+++ + + F+ M K + + +V A GQ
Sbjct: 378 LVSDVRFGNALINMYSKAGSMK--DARQVFDRMPKR-----DVVSWTALVGGYADCGQVV 430
Query: 369 DTLNFMKKM 377
++ + KKM
Sbjct: 431 ESFSTFKKM 439
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 47/290 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK++H H L+ ++ ++ + N+L+ Y C + A F K K +VSWN M++
Sbjct: 60 LAVGKQVHEHILRFG-MKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMIS 118
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA G G+ A F+ M Q ++P+ + +L+AC+ G+E
Sbjct: 119 GYAHRGL------------GQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H V+ GL + V N+LI MY +CG+++ + R F+ M
Sbjct: 167 VHVRVME----------------AGLANNATVGNALISMYAKCGSVR--DARRVFDAMAS 208
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSAEPCNPDIAEHAARHLF 400
+ + + A +G ++L M E PS N A
Sbjct: 209 RDEV-----SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSA------CG 257
Query: 401 ELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC 449
L L GK +H+ I HS V ++S L ++Y + + + + C
Sbjct: 258 SLAALEKGKQIHAQIVESEHHSDV-RVSTALTKMYIKCGAVKDAREVFEC 306
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/435 (36%), Positives = 228/435 (52%), Gaps = 101/435 (23%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V+ N +LL SMDLTNPDEC YA I Q+C KL NL LG QVHA L+V GV++C FLG
Sbjct: 69 VLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGS 128
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-- 101
MF+KM ERNVFSWT++M MY LG YEE + LFYL+++EGV
Sbjct: 129 RLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRP 188
Query: 102 --------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
+KACSELK++RVGKDVYDYM+SI FEGN+CVK +LDMFIKCGRM++A F
Sbjct: 189 DHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFF 248
Query: 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC----KFSK 209
EE +F KD +++V+ + +K + K C K S
Sbjct: 249 EEIEF------------------KDVFMWNIMVSG----YTSKGEFKKALKCISDMKLSG 286
Query: 210 IKQKHLVSWNAMLAGYALGGFREE------------------------ITGFTQYGDGET 245
+K V+WNA+++GYA G EE I G Q G
Sbjct: 287 VKPDQ-VTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F +M+ ++PN+I+++ ++AC + + G+EIHGY ++
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK--------------- 390
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
++ L + V NSL+D Y +C +++ R F M+K + + + M+ A G
Sbjct: 391 VEELDSDLLVGNSLVDYYAKCRSVEVAR--RKFGMIK-----QTDLVSWNAMLAGYALRG 443
Query: 366 QFDDTLNFMKKMPFE 380
++ + + +M F+
Sbjct: 444 SHEEAIELLSEMKFQ 458
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 173/601 (28%), Positives = 270/601 (44%), Gaps = 167/601 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELCAFL 59
+ + M L ++T A C L+ L G ++H + I + G L +
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408
Query: 60 GM----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDE 99
F + + ++ SW +M+ Y + G +EE + L ++
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
G+ ++ D + + + M S+ + N L CG++
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL---AACGQVRN----------- 514
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
LK GKEIH + L+ + +E V ++L+ Y+ C L+VA FS++ + +V WN
Sbjct: 515 ----LKLGKEIHGYVLR-NHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWN 569
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
++++ A Q G AL+ M ++++ NT+++ L AC+++ +
Sbjct: 570 SIISACA------------QSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 617
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMY 323
GKEIH +++R + + +LI + G GS WN +I +Y
Sbjct: 618 QGKEIHQFIIRCGLDTCNFILNSLIDMYGR-CGSIQKSRRIFDLMPQRDLVSWNVMISVY 676
Query: 324 G---------------RCGAIQKN------------------EGWRYFEMMKKEYNMEPA 350
G R ++ N EGW+YF+MMK EY M+PA
Sbjct: 677 GMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPA 736
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLF 400
+EQY CMVDLL+RAGQF++TL F++KMPFEP++A CNPD+AE+AAR+LF
Sbjct: 737 VEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLF 796
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
ELEP SSG K+HSF+ GD
Sbjct: 797 ELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGD 856
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
TSH L+ +IS K +L + + K CGHSEK+ALAFGLIST+ G+PLR+IKNLR
Sbjct: 857 TSHPLMEQISGKDGKLDVDEDE----KEFSLCGHSEKIALAFGLISTTXGTPLRIIKNLR 912
Query: 478 M 478
+
Sbjct: 913 V 913
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 196/389 (50%), Gaps = 94/389 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCAFLGM----FEKMPERN 69
+F+ C +L N +G V+ +++ G E C + + FE++ ++
Sbjct: 196 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 255
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------------------YKACSE--- 107
VF W M+ Y G +++ + + GV ++ S+
Sbjct: 256 VFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFL 315
Query: 108 ----LKDHRVGKDVYDYMIS------IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
LKD + + +I+ FE + ++ VL+ +K + +AS
Sbjct: 316 EMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG-VKPNSITIASAV---SA 371
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+NLSLL+HG+EIH + +K ++L+SDLLV NSL+D+YAKCR ++VA KF IKQ LVS
Sbjct: 372 CTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVS 431
Query: 218 WNAMLAGYALGGFREE-----------------------ITGFTQYGDGETALEFFSRMI 254
WNAMLAGYAL G EE +TGFTQYGDG+ ALEFF RM
Sbjct: 432 WNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMH 491
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314
M PNT ++SG LAAC QV+ KLGKEIHGYVLR+HI+LSTGVG ALIS+ G S
Sbjct: 492 SMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS-GCDSL 550
Query: 315 ----------------VWNSLIDMYGRCG 327
VWNS+I + G
Sbjct: 551 EVACSVFSELSTRDVVVWNSIISACAQSG 579
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----- 59
N LL+ M+L+N + TVT C KL L G ++H +I CG++ C F+
Sbjct: 583 NALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLI 642
Query: 60 -------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ MP+R++ SW M+ +Y + G+ + VNLF
Sbjct: 643 DMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 689
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/636 (29%), Positives = 282/636 (44%), Gaps = 191/636 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+++ +R+V SW SM+ Y G E+ ++LF ++ G V CS
Sbjct: 207 LFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGM 266
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+G+ ++ Y I F + +LDM+ K G + A FE
Sbjct: 267 LLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 326
Query: 155 --EKDFSNLS------------------------------LLKHGKEIHPHHLKKDDLES 182
+ S++S LL++GK++H +++K++ ++S
Sbjct: 327 YAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVH-NYIKENKMQS 385
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL V+N+LMD YAKC + AH FS+++ K +VSWN M+ GY+ E
Sbjct: 386 DLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE--------- 436
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M Q + +PN+I+++ +L ACA + + G+EIHG++LR+ L V A
Sbjct: 437 ---ALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANA 492
Query: 303 LISI----QGLGTGSFV-----------WNSLIDMYG---------------RCGAIQKN 332
L+ + LG + W +I YG R I+ +
Sbjct: 493 LVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPD 552
Query: 333 E------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
E GW +F MM+ +EP E Y C+VDLLARAG F+
Sbjct: 553 EVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFI 612
Query: 375 KKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG---------------- 408
K MP EP + A C + +AE A H+FELEP ++G
Sbjct: 613 KMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWE 672
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
KVH F+ GD+SH L +KI L + + +K+ G
Sbjct: 673 EVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEG 732
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ K + CGHSEK+A+AFG++S PG +RV KNLR+CGDCH K
Sbjct: 733 HFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAK 792
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK K R+II+ D+ RFHHF DG+CSC +W
Sbjct: 793 FMSKMVK----RDIILRDSNRFHHFKDGSCSCRGHW 824
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 156/349 (44%), Gaps = 57/349 (16%)
Query: 9 LLQSMDLTN----PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
L ++M+L N PD TY + Q C L +++ G ++H+ + VE+ LG
Sbjct: 84 LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+K+ VF W +M Y +G + E ++LF + + G+ + S
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203
Query: 107 ELK--DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM----EMASGEFEEKDFSN 160
K D +DV + I + + LD+F + + ++A+ SN
Sbjct: 204 ARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSN 263
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
+L G+ +H + +K +L +NN L+D Y+K L A F + ++ +VSW +
Sbjct: 264 TGMLLLGRALHGYAIKAS-FGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 322
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+AGYA G + ++ F M + + P+ +++ +L ACA +
Sbjct: 323 MIAGYAREGL------------SDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLEN 370
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
GK++H Y+ + +Q + FV N+L+DMY +CG++
Sbjct: 371 GKDVHNYIKENKMQ----------------SDLFVSNALMDMYAKCGSM 403
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLGM- 61
N ++T A I C L LE G ++H H++ G L C LG+
Sbjct: 447 NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLA 506
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
F+ +PE+++ SWT M+ Y + GY E + F + + G+
Sbjct: 507 RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGI 549
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGVEL-----CAFLG-- 60
+PD T+T I C LE G VH + L V + C +G
Sbjct: 349 SPDIFTIT--TILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDA 406
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELK 109
+F +M +++ SW +M+G Y+ E +NLF + + AC+ L
Sbjct: 407 HSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLA 466
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKH 166
G++++ +++ F + V ++DM++KCG + +A F+ EKD + +++
Sbjct: 467 ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 526
Query: 167 GKEIH 171
G +H
Sbjct: 527 GYGMH 531
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 184/698 (26%), Positives = 295/698 (42%), Gaps = 210/698 (30%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
NPD+ + + + + C ++L+ G +VH +I G E +G
Sbjct: 117 NPDK--LVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENA 174
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F++MP+R+V SW +++ Y+ G E + LF + G V C+ L
Sbjct: 175 RQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHL 234
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS------ 162
GK ++ Y I E + V +++M+ KCG + A FE +++
Sbjct: 235 LALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAII 294
Query: 163 ------------------------------------------LLKHGKEIHPHHLKKDDL 180
L+ G++IH + ++
Sbjct: 295 GGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIR-SGF 353
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
ES+ +V N+L++ YAKC + A+ F ++ +K++V+WNA+++GY +Q+
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGY------------SQH 401
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G AL F M ++P++ ++ VL ACA + GK+IHGY +R + + VG
Sbjct: 402 GHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVG 461
Query: 301 IALISIQG----LGTGS-----------FVWNSLIDMYGRCG------------------ 327
L+ I + T W ++I YG G
Sbjct: 462 TGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTK 521
Query: 328 ---------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
A ++G +YF+ MK +Y + P +E Y C+VDLL RAG D+
Sbjct: 522 LDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANG 581
Query: 373 FMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-------------- 408
+K M EP + CN ++ E AA+HLFEL+P ++G
Sbjct: 582 IIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQR 641
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
V +F+ GD +H +I L LY +++K
Sbjct: 642 WEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRK 701
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ K HSEKLA++FG+I+TSPG P+R++KNLR+C DCH+
Sbjct: 702 AGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNA 761
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK REII+ D RFHH +G CSCGDYW
Sbjct: 762 TKFISKIVG----REIIVRDANRFHHVKNGFCSCGDYW 795
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
++E I G+ + G AL + +M +T + P+ + V+ AC + G+++H ++
Sbjct: 88 WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+ VG AL S MY +CG+++ + F+ M K
Sbjct: 148 ARGFESDVIVGTALAS----------------MYTKCGSLENAR--QVFDRMPKR 184
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 296/690 (42%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
+ + + C +L G ++H LIV G F MF++M
Sbjct: 177 NFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRM 236
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PER++ W +++ Y G+ + + L + +EG + A +++ R+G+
Sbjct: 237 PERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGR 296
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---------------------- 153
++ Y + FE V ++DM+ KCG + A F
Sbjct: 297 SIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNG 356
Query: 154 --------------EEKDFSNLSLL------------KHGKEIHPHHLKKDDLESDLLVN 187
E+ + +N++++ + G+ +H L + +L SD+ V
Sbjct: 357 DPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVH-KLLDQLELGSDVSVM 415
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y+KC+ + +A F ++ K LVSWNAM+ GYA Q G A+
Sbjct: 416 NSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA------------QNGRINEAI 463
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
++F +M +++P++ ++ V+ A A++ K IHG V+R + + V AL+ +
Sbjct: 464 DYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMY 523
Query: 308 G----LGTGS-----------FVWNSLIDMYGRCG---------------AIQKNE---- 333
+ T WN++ID YG G I+ NE
Sbjct: 524 AKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFL 583
Query: 334 --------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G++YF MKK+Y +EPAM+ Y MVDLL RA + ++ +F++KMP
Sbjct: 584 CVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPI 643
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
EP+ + C N ++ E AA +F+L+P G
Sbjct: 644 EPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARV 703
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+VH+F +G TSH KI L L + IK GYM
Sbjct: 704 RTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDT 763
Query: 447 PAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ HSEKLA+AF L++TSPG+ + + KNLR+CGDCH+ TKY+S
Sbjct: 764 NSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVT 823
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REII+ D RFHHF DG CSCGDYW
Sbjct: 824 K----REIIVRDMRRFHHFKDGTCSCGDYW 849
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 32/183 (17%)
Query: 161 LSLLKHGKEIHPH--HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
L L KE+H + K+ L S+ L L+ + K L A F I+ K +
Sbjct: 84 LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELY 143
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
+ ML GYA ++ A+ FF RM ++P + + +L C
Sbjct: 144 HTMLKGYARNSSLDD------------AVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADL 191
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
+ GKEIH ++ + G + F +++MY +C ++ E ++ F
Sbjct: 192 RKGKEIHCQLI----------------VNGFASNVFAMTGVVNMYAKCRLVE--EAYKMF 233
Query: 339 EMM 341
+ M
Sbjct: 234 DRM 236
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 196/710 (27%), Positives = 295/710 (41%), Gaps = 211/710 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+ L+Q L PD+ T+ I C L G ++H ++ G+ +G
Sbjct: 115 NLFTLMQQERL-EPDK--FTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALI 171
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------- 99
+F+ M R+ SWT++ G Y GY EE + ++ ++ E
Sbjct: 172 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRI 231
Query: 100 ---GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------- 149
V AC L GK ++ +++ ++ + V + M++KCG + A
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291
Query: 150 -----------------SGEFEEK--------------DFSNLSL----------LKHGK 168
SG+ EE D + + L GK
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK 351
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH KD L SD+ N+L++ Y+K +K A F ++ ++ +VSW +L YA
Sbjct: 352 EIHAR-AAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYA-- 408
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ + FT F +M+Q ++ N I+ VL AC+ K GKEIH V
Sbjct: 409 DCDQVVESFTT----------FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEV 458
Query: 289 LRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AI 329
++ + V AL+S+ +G+ V WN+LI G+ G A+
Sbjct: 459 VKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEAL 518
Query: 330 QK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
Q+ EG R F M K+Y + P + Y CMVD+
Sbjct: 519 QRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDI 578
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-- 408
LARAG + + + +P +PS+A CN +I E AA H +LEP ++G
Sbjct: 579 LARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLY 638
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VHSF+A D SH +I
Sbjct: 639 VSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIY 698
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+L L ++K +GY+ K C HSEKLA+A+GLIST PG+P+R+
Sbjct: 699 AELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRIS 758
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK++SK K REII D +RFHHF +G CSCGDYW
Sbjct: 759 KNLRVCTDCHTATKFISKITK----REIIARDAHRFHHFKNGECSCGDYW 804
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/412 (23%), Positives = 162/412 (39%), Gaps = 107/412 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+LQ + P + Y + Q C K +L +G QVH H++ CGV+ ++
Sbjct: 15 VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------G 100
+F+K ++V SW M+ Y G +E NLF L+ E
Sbjct: 75 HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----------- 149
+ ACS G++++ ++ + V ++ M+ KCG + A
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194
Query: 150 -------SGEFEEKDF------------------------------SNLSLLKHGKEIHP 172
+G + E + +L+ L+ GK+IH
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHA 254
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
H+ + + SD+ V+ +L Y KC K A F + + +++WN M
Sbjct: 255 -HIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTM----------- 302
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
I GF G E A F RM++ + P+ + + VL+ACA+ G GKEIH
Sbjct: 303 -IRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIH------- 354
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
A + GL + N+LI+MY + G+++ + + F+ M K
Sbjct: 355 ---------ARAAKDGLVSDVRFGNALINMYSKAGSMK--DARQVFDRMPKR 395
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 47/275 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK++H H L+ ++ ++ + N+L+ YA C + A F K K +VSWN M++
Sbjct: 44 LAVGKQVHEHILRCG-VKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMIS 102
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA G +E A F+ M Q ++P+ + +L+AC+ G+E
Sbjct: 103 GYAHRGLAQE------------AFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
IH V+ GL + V N+LI MY +CG+++ + R F+ M
Sbjct: 151 IHVRVME----------------AGLANDTTVGNALISMYAKCGSVR--DARRVFDAMAS 192
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSAEPCNPDIAEHAARHLF 400
+ + + A +G +++L M E PS N A
Sbjct: 193 RDEV-----SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA------CG 241
Query: 401 ELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLY 434
L L GK +H+ I HS V ++S L ++Y
Sbjct: 242 SLAALEKGKQIHAHIVESEYHSDV-RVSTALTKMY 275
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 191/690 (27%), Positives = 292/690 (42%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLG----------------MFEKM 65
+ + + C ++L+ G ++H +I G L A G MF++M
Sbjct: 32 NFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRM 91
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PER++ W +M+ Y G+ + + L + +EG + A ++ + R+G
Sbjct: 92 PERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGM 151
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----------------- 158
V+ Y++ FE V ++DM+ KCG + +A F+ D
Sbjct: 152 AVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSG 211
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ GK +H + + L+SD+ V
Sbjct: 212 DAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKL-VDQLKLDSDVSVM 270
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y+KC+ + +A F ++ K LVSWNAM+ GYA G E AL
Sbjct: 271 NSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNE------------AL 318
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
F M +++P++ ++ V+ A A++ + K IHG V+R + + V AL+ +
Sbjct: 319 NAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMY 378
Query: 307 ---QGLGTGS-----------FVWNSLIDMYG---------------RCGAIQKN----- 332
+ T WN++ID YG + G I+ N
Sbjct: 379 AKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFL 438
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG +FE MKK+Y +EP M+ Y MVDLL RAG+ + +F++KMP
Sbjct: 439 CALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPI 498
Query: 380 EP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P + C N D+ E AA +F+L P G
Sbjct: 499 KPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKV 558
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+VHSF +G TSH KI L L EI+ GY+
Sbjct: 559 RTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDT 618
Query: 447 PAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ HSEKLA+AFGL++TS G+P+ + KNLR+CGDCH+ TKY+S
Sbjct: 619 NSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVT 678
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D +RFH F DG CSCGDYW
Sbjct: 679 G----REIIVRDMHRFHLFKDGVCSCGDYW 704
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 28/113 (24%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ G+ + ++AL FFSRM ++P + + +L C K GKEIHG V+
Sbjct: 2 LKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVI---- 57
Query: 294 QLSTGVGIALISIQGLGTGSFVWN-----SLIDMYGRCGAIQKNEGWRYFEMM 341
T F WN +++MY +C I N+ + F+ M
Sbjct: 58 -----------------TSGFSWNLFAMTGVVNMYAKCRQI--NDAYNMFDRM 91
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 191/636 (30%), Positives = 274/636 (43%), Gaps = 199/636 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV--------------------CGVELCAFLGMFE 63
T +F C + L LG +H++ I CG +L + + +FE
Sbjct: 354 TMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCG-DLNSAIRVFE 412
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+M E+ V SWTSM + GY E + +G K E+K V DVY +
Sbjct: 413 RMDEKTVVSWTSM-----ITGYVRE-------GLSDGAIKLFDEMKSRGVVPDVY----A 456
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ NAC +G LK GK +H ++++++LE++
Sbjct: 457 VTSILNACA----------------INGN-----------LKSGKIVH-DYIRENNLETN 488
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V+N+L D YAKC +K AH FS +K+K ++SWN M+ GY E
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNE---------- 538
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL F+ M Q + +P+ +++ +L ACA + G+EIHGY LR+ V A+
Sbjct: 539 --ALTLFAEM-QRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAV 595
Query: 304 ISIQGLGTGSFV----------------WNSLIDMYGRCG----AIQK------------ 331
+ + + G V W +I YG G AI
Sbjct: 596 VDMY-VKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPD 654
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+EGW+ F +MKKE +EP +E Y CMVDLLAR G F+
Sbjct: 655 EVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFI 714
Query: 375 KKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG---------------- 408
K MP +P + A C + +AE A +FELEP ++G
Sbjct: 715 KAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWE 774
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
K++ F+AGD S KI L RL S++K+ G
Sbjct: 775 EVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEG 834
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y K + CGHSEKLA+AFG+++ PG +RV KNLR+CGDCH K
Sbjct: 835 YSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAK 894
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK+ REII+ D+ RFHHF DG+CSC YW
Sbjct: 895 FMSKSA----SREIILRDSSRFHHFKDGSCSCRGYW 926
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 147/393 (37%), Gaps = 98/393 (24%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM- 61
+KN LL S +N D Y I Q C + ++ G +V + + GV + LG+
Sbjct: 133 LKNAMELLCSSQNSNFD--LGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVK 190
Query: 62 -----------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA 104
F+K+ E +F W M+ Y+ G Y E +NLF +++ G+
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGI--- 247
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
+ N+ +L F R+E
Sbjct: 248 ----------------------KPNSYTFSSILKCFAAVARVE----------------- 268
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G+++H + K S V NSL+ FY R ++ A F ++ + ++SWN+M++G
Sbjct: 269 -EGRQVHGL-ICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
Y G + +E F +M+ + + ++ V ACA + LGK +
Sbjct: 327 YVKNGLDDR------------GIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVL 374
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
H Y ++ L N+L+DMY +CG + N R FE M
Sbjct: 375 HSYSIKAAT---------------LDREVRFNNTLLDMYSKCGDL--NSAIRVFERMD-- 415
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
E + + M+ R G D + +M
Sbjct: 416 ---EKTVVSWTSMITGYVREGLSDGAIKLFDEM 445
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 20/106 (18%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VE 54
+TL + + PD TV A I C L L+ G ++H + + G V+
Sbjct: 540 LTLFAEMQRESKPDGTTV--ACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVD 597
Query: 55 L---CAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+ C L +F+ +P +++ SWT M+ Y + GY E +N F
Sbjct: 598 MYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTF 643
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 178/609 (29%), Positives = 259/609 (42%), Gaps = 173/609 (28%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CA 57
I V LL+ M VT+ I + C LE G Q+HA L G EL A
Sbjct: 345 IDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTA 404
Query: 58 FLGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA 104
M F KM +NV +WTS + MY G +F + V
Sbjct: 405 IFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSW 464
Query: 105 CSELKDHRVGKD---VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
+ + D V++ + S+K EG + V+ + CG L
Sbjct: 465 NLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACG---------------AL 509
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
+ L+ GK +H +K LESD +V SL+ Y+KC + A F K+ + V+WNAM
Sbjct: 510 AGLERGKLVHAEAVKLG-LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAM 568
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
LAGY Q+GDG A++ F RM++ + PN I+L+ V++AC++ + G
Sbjct: 569 LAGYG------------QHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEG 616
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+EI F MM
Sbjct: 617 REI-----------------------------------------------------FRMM 623
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDI 391
++++ M P + Y CMVDLL RAG+ + F++ MP EP + N +
Sbjct: 624 QEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQL 683
Query: 392 AEHAARHLFELEP--------LSS-----------------------------------G 408
AE AA H+ ELEP LS+ G
Sbjct: 684 AERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDG 743
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEK 454
++H+F+A D +H + I +L L E+K+ GY K C HSEK
Sbjct: 744 RIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEK 803
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+A+GL+ T G+P+R++KNLR+CGDCH+ TK++SK R+REI+ D RFH+F +
Sbjct: 804 LAIAYGLLKTPSGTPIRIMKNLRVCGDCHTATKFISKI----RKREIVARDANRFHYFNN 859
Query: 515 GACSCGDYW 523
G CSCGD+W
Sbjct: 860 GTCSCGDFW 868
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 153/404 (37%), Gaps = 105/404 (25%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY + + C K E G VH L GVE+ +LG +F +M
Sbjct: 58 TYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRM 117
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
R+V +W+SM+ Y + + + F + D + KAC+ G+
Sbjct: 118 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGR 177
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------------- 161
++ + ++ E + V ++ M+ KCG + +A F + N+
Sbjct: 178 KIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHR 237
Query: 162 ----------------------------------SLLKHGKEIHPHHLKKDDLESDLLVN 187
L G+ IH H + + LE+D++V
Sbjct: 238 KLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH-ISERGLETDMIVA 296
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ Y KC ++ A F ++ ++ ++SW+AM+AGYA G Y D E+
Sbjct: 297 NALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG----------YKDKESID 346
Query: 248 EFFS---RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
E F RM + + PN ++ +L AC + G++IH + + +L + A+
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIF 406
Query: 305 SIQG---------------LGTGSFVWNSLIDMYGRCGAIQKNE 333
++ W S + MY +CG + E
Sbjct: 407 NMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAE 450
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 172/652 (26%), Positives = 275/652 (42%), Gaps = 191/652 (29%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM-------------FE 63
VT+ + C L G ++H+H+ G+E A + M F+
Sbjct: 280 AVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFD 339
Query: 64 KMPERNVFSWTSMMGMYNVLGY-----YEEIVNLFYLLIDEGVY----------KACSEL 108
+M +R+V SW++M+ Y GY +E+ L + EGV+ KACS
Sbjct: 340 RMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVH 399
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
G+ ++ + + FE + ++ + +M+ KCG + A F + + N+
Sbjct: 400 GALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV------- 452
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+ SL+ Y KC L A FS++ +++VSWN M+AGYA
Sbjct: 453 ----------------VAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYA-- 494
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q GD E S M QP+ +++ +L AC + + GK +H
Sbjct: 495 ----------QSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544
Query: 289 LRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYG--------- 324
++ ++ T V +LI + + WN+++ YG
Sbjct: 545 VKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAV 604
Query: 325 --------------------------RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
R G +Q EG F +M++++ M+P + Y CMV
Sbjct: 605 DLFKRMLKERVPPNEITFTAVISACGRAGLVQ--EGREIFRIMQEDFRMKPGKQHYGCMV 662
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS- 407
DLL RAG+ + F+++MP EP + C N +AE AA H+ LEP ++
Sbjct: 663 DLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNAS 722
Query: 408 ------------------------------------------GKVHSFIAGDTSHSLVHK 425
G++H+F+A D +H +
Sbjct: 723 VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDS 782
Query: 426 ISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLR 471
I +L L E+K+ GY K C HSEKLA+A+GL+ T PG+P+R
Sbjct: 783 IHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIR 842
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+CGDCH+ TK++SK R+REI+ D RFH+F +G CSCGD+W
Sbjct: 843 IMKNLRVCGDCHTATKFISKI----RKREIVARDANRFHYFKNGTCSCGDFW 890
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 106/389 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY I + C KL E G VH L G+ + +LG +F +M
Sbjct: 80 TYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRM 139
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
R+V +W+SM+ Y + + + F + D + KAC+ +
Sbjct: 140 TLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAR 199
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------------- 161
+++ + + E + V ++ M+ KCG + +A F++ N+
Sbjct: 200 EIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHR 259
Query: 162 ----------------------------------SLLKHGKEIHPHHLKKDDLESDLLVN 187
L G+ IH H + + LE+D++V
Sbjct: 260 KLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSH-ISERGLETDVVVA 318
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ Y KC ++ A F ++ ++ ++SW+AM+AGYA G Y D E+
Sbjct: 319 NALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG----------YQDKESLD 368
Query: 248 EFFS---RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
E F RM + + PN ++ +L AC+ + G++IH A I
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH----------------AEI 412
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
S G + + ++ +MY +CG+I + E
Sbjct: 413 SKVGFESDRSLQTAIFNMYAKCGSIYEAE 441
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCA 57
I V LL SM + VT I + C L+ LE G VHA + G+E +
Sbjct: 499 IAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATS 558
Query: 58 FLGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+GM F+K+ R+ +W +M+ Y G E V+LF ++ E V
Sbjct: 559 LIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERV 615
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 188/690 (27%), Positives = 288/690 (41%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
+ + + C +L+ G ++H LI F MF++M
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PER++ SW +++ ++ G+ ++ + L + DEG V A +++ VGK
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------------------ 157
++ Y I F + + DM+ KCG +E A F+ D
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328
Query: 158 ------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ GK +H + + +L SD+ V
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKF-VDQLNLGSDISVM 387
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y+KC+ + +A F+ + + VSWNAM+ GYA Q G AL
Sbjct: 388 NSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYA------------QNGRVSEAL 435
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
FS M M+P++ ++ V+ A A++ + K IHG ++R + + V AL+ +
Sbjct: 436 NCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMY 495
Query: 308 G------LGTGSF---------VWNSLIDMYG---------------RCGAIQKN----- 332
+ F WN++ID YG + GA++ N
Sbjct: 496 SKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYL 555
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG R+F+ MK++Y +EP+M+ Y MVDLL RAG+ + +F++ MP
Sbjct: 556 SVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPI 615
Query: 380 EP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
P + C N ++ E AA+ LFEL P G
Sbjct: 616 SPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEV 675
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+VHSF +G T+H +I L L EIK GY+
Sbjct: 676 RKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDT 735
Query: 447 PAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
HSEKLA+AFGL++TSPG+ + V KNLR+CGDCH+ TKY+S
Sbjct: 736 NLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVT 795
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF +G CSCGDYW
Sbjct: 796 G----REIIVRDMQRFHHFKNGICSCGDYW 821
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K+ L ++ L L+ ++K + A F I K ++ ML GYA
Sbjct: 74 KNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA---------- 123
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+ ETAL F RM D++P + + +L C K GKEIHG QL
Sbjct: 124 --KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG-------QLI 174
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
T F +++MY +C I ++ ++ F+ M
Sbjct: 175 T---------NSFAANVFAMTGVVNMYAKCRQI--DDAYKMFDRM 208
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 181/635 (28%), Positives = 274/635 (43%), Gaps = 189/635 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
MF++MPER++ SW +++ ++ G+ ++ + L + DEG V A +++
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------------- 157
VGK ++ Y I F + + DM+ KCG +E A F+ D
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDG 323
Query: 158 -----------------------------------FSNLSLLKHGKEIHPHHLKKDDLES 182
++L L+ GK +H + + +L S
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKF-VDQLNLGS 382
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NSL+ Y+KC+ + +A F+ + + VSWNAM+ GYA Q G
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYA------------QNGR 430
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL FS M M+P++ ++ V+ A A++ + K IHG ++R + + V A
Sbjct: 431 VSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTA 490
Query: 303 LISIQG------LGTGSF---------VWNSLIDMYG---------------RCGAIQKN 332
L+ + + F WN++ID YG + GA++ N
Sbjct: 491 LVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPN 550
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG R+F+ MK++Y +EP+M+ Y MVDLL RAG+ + +F+
Sbjct: 551 DITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFI 610
Query: 375 KKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---------------- 408
+ MP P + C N ++ E AA+ LFEL P G
Sbjct: 611 ENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWS 670
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+VHSF +G T+H +I L L EIK G
Sbjct: 671 KVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAG 730
Query: 442 YMKRIPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
Y+ HSEKLA+AFGL++TSPG+ + V KNLR+CGDCH+ TKY
Sbjct: 731 YVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKY 790
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S REII+ D RFHHF +G CSCGDYW
Sbjct: 791 ISLVTG----REIIVRDMQRFHHFKNGICSCGDYW 821
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 47/281 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GKEIH L + +++ +++ YAKCR + A+ F ++ ++ LVSWN ++A
Sbjct: 163 LKRGKEIHGQ-LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIA 221
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
G++ GF ++ ALE RM +P++I+L VL A A V +GK
Sbjct: 222 GFSQNGFAKK------------ALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKS 269
Query: 284 IHGYVLRHHIQLSTGVGIA-LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
IHGY +R G A L++I +L DMY +CG+++ F+ M
Sbjct: 270 IHGYAIR--------AGFAKLVNIS---------TALADMYSKCGSVETAR--LIFDGMD 310
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE--HAARHLF 400
++ + + M+D + G+ + + +KM E +P I E HA L
Sbjct: 311 QK-----TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE--GIDPTGVTIMEALHACADLG 363
Query: 401 ELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+LE GK VH F+ S + + L+ +YS+ K++
Sbjct: 364 DLE---RGKFVHKFVDQLNLGSDI-SVMNSLISMYSKCKRV 400
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K+ L ++ L L+ ++K + A F I K ++ ML GYA
Sbjct: 74 KNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA---------- 123
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+ ETAL F RM D++P + + +L C K GKEIHG QL
Sbjct: 124 --KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHG-------QLI 174
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
T F +++MY +C I ++ ++ F+ M
Sbjct: 175 T---------NSFAANVFAMTGVVNMYAKCRQI--DDAYKMFDRM 208
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 179/630 (28%), Positives = 271/630 (43%), Gaps = 196/630 (31%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAFLGMFEKMPER 68
I Q C ++ LG VH + CGV A L +F+ M R
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAIL-VFDLMSVR 62
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG 128
V +WTS++ Y G +E + LF+ + EGV D++ I+
Sbjct: 63 TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGV------------SPDIF--TITTVLHA 108
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
AC +G E +GK++H ++++++D++S++ V N
Sbjct: 109 CAC------------------NGSLE-----------NGKDVH-NYIRENDMQSNIFVCN 138
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+LMD YAKC ++ A+ F ++ K ++SWN M+ GY+ E AL
Sbjct: 139 ALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE------------ALS 186
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-- 306
F M+ +M+P+ +L+ +L ACA + GKE+HG++LR+ V AL+ +
Sbjct: 187 LFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYV 245
Query: 307 ------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQKNE----- 333
+ T + W +I YG R I+ +E
Sbjct: 246 KCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFIS 305
Query: 334 -------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
GWR+F +M+ E N++P +E Y C+VDLLAR+G+ F+K MP E
Sbjct: 306 ILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIE 365
Query: 381 PSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------------- 408
P + C + +AE A H+FELEP ++G
Sbjct: 366 PDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLR 425
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH F+AG++SH KI L RL S++K+ GY
Sbjct: 426 QKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTR 485
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K CGHSEKLA+AFG+++ P +RV KNLR+CGDCH K++SK
Sbjct: 486 YALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKT- 544
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D+ RFHHF DG C C +W
Sbjct: 545 ---LGREIVLRDSNRFHHFKDGVCCCRGFW 571
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 34/195 (17%)
Query: 9 LLQSMDL--TNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGVEL-- 55
L MD +PD T+T L C +LE G VH +++ VC +
Sbjct: 86 LFHEMDREGVSPDIFTITTVL--HACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDM 143
Query: 56 ---CAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE--------- 99
C + +F +MP +++ SW +M+G Y+ E ++LF ++ E
Sbjct: 144 YAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGTTLA 203
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EK 156
+ AC+ L GK+V+ +++ F + V ++DM++KCG +A F+ K
Sbjct: 204 CILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTK 263
Query: 157 DFSNLSLLKHGKEIH 171
D +++ G +H
Sbjct: 264 DLITWTVMIAGYGMH 278
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 186/629 (29%), Positives = 264/629 (41%), Gaps = 197/629 (31%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAFL 59
D T+ L+ C K L LG VH+ I CG +L L
Sbjct: 112 DLATIISVLV--GCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCG-DLDGAL 168
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+FEKM ERNV SWTSM+ Y G+ + + L + EGV AC+
Sbjct: 169 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF-------- 158
GKDV+DY+ + N V ++DM+ KCG ME A+ F KD
Sbjct: 229 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 288
Query: 159 ----------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
++LS L+ GKEIH + L+ + SD V N+L+D Y KC L +
Sbjct: 289 ELKPDSRTMACILPACASLSALERGKEIHGYILR-NGYSSDRHVANALVDLYVKCGVLGL 347
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262
A F I K LVSW M+AGY + G+ G A+ F+ M ++P+
Sbjct: 348 ARLLFDMIPSKDLVSWTVMIAGYGMHGY------------GNEAIATFNEMRDAGIEPDE 395
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
+S +L AC+ H L G
Sbjct: 396 VSFISILYACS-----------------HSGLLEQG------------------------ 414
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
WR+F +MK ++N+EP +E Y CMVDLL+R G F++ +P P
Sbjct: 415 ------------WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPD 462
Query: 383 S----AEPC------NPDIAEHAARHLFELEPLSS------------------------- 407
+ A C + ++AE A +FELEP ++
Sbjct: 463 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 522
Query: 408 ------------------GKVHSFIAG-DTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
G+V+ F++G ++SH KI L ++ ++K+ GY
Sbjct: 523 IGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 582
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K + CGHSEKLA+AFGL++ P +RV KNLR+CGDCH K++SK
Sbjct: 583 ALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSK--- 639
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
E REI++ D+ RFHHF DG CSC +W
Sbjct: 640 -ETRREIVLRDSNRFHHFKDGYCSCRGFW 667
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 139/294 (47%), Gaps = 69/294 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----YKACSELKDHRVGKD 116
+F+ M ++NV+ W M+ Y +G ++E + LF +++++G+ ++ SEL D +D
Sbjct: 18 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRD 77
Query: 117 V--YDYMISIKFEGNACVKR------------------PVLDMFIKCGRMEMASGEFEEK 156
V ++ MIS + N +R ++ + + C + SG
Sbjct: 78 VISWNSMIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK----SG----- 127
Query: 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
LSL GK +H +K E + +N+L+D Y+KC L A F K+ ++++V
Sbjct: 128 ---TLSL---GKAVHSLAIK-SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SW +M+AGY G + DG A+ +M + ++ + ++++ +L ACA+
Sbjct: 181 SWTSMIAGYTRDG----------WSDG--AIILLQQMEKEGVKLDVVAITSILHACARSG 228
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GK++H Y I + + FV N+L+DMY +CG+++
Sbjct: 229 SLDNGKDVHDY----------------IKANNMASNLFVCNALMDMYAKCGSME 266
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 67/287 (23%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREE--------------- 233
L+ FYA C LK F +++K++ WN M++ YA +G F+E
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61
Query: 234 -----------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
I+G+ G E L + +M+ + + ++ VL
Sbjct: 62 RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
CA+ LGK +H ++ + N+L+DMY +CG +
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERRINFS----------------NTLLDMYSKCGDL- 164
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
+ R FE M E + + M+ R G D + +++M E +
Sbjct: 165 -DGALRVFEKMG-----ERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAIT 218
Query: 391 IAEHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSE 436
HA L+ +GK VH +I + S + + LM +Y++
Sbjct: 219 SILHACARSGSLD---NGKDVHDYIKANNMASNLF-VCNALMDMYAK 261
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------- 52
V+K++ + PD + T A I C L+ LE G ++H +++ G
Sbjct: 276 VVKDIISWNTMVGELKPD--SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN 333
Query: 53 --VEL---CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V+L C LG+ F+ +P +++ SWT M+ Y + GY E + F + D G+
Sbjct: 334 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 391
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 79/187 (42%), Gaps = 32/187 (17%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGVEL--- 55
+LLQ M+ V I C + +L+ G VH ++L VC +
Sbjct: 200 ILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMY 259
Query: 56 --CAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK 109
C + +F M +++ SW +M+G + + +L AC+ L
Sbjct: 260 AKCGSMEGANSVFSTMVVKDIISWNTMVGELK-----PDSRTMACIL------PACASLS 308
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKH 166
GK+++ Y++ + + V ++D+++KCG + +A F+ KD + +++
Sbjct: 309 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 368
Query: 167 GKEIHPH 173
G +H +
Sbjct: 369 GYGMHGY 375
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 183/654 (27%), Positives = 283/654 (43%), Gaps = 179/654 (27%)
Query: 9 LLQSMDLTN----PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
L ++M+L N PD TY + Q C L +++ G ++H+ + VE+ LG
Sbjct: 84 LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLV 143
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+K+ VF W +M Y +G + E ++LF + + G+ + S
Sbjct: 144 FMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVES 203
Query: 107 ELK--DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
K D +DV + ++ ++ G E FE+ + LL
Sbjct: 204 ARKLFDELGDRDVISW-------------NSMISGYVSNGLSEKGLDLFEQ-----MLLL 245
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
++ + +L +NN L+D Y+K L A F + ++ +VSW +M+AG
Sbjct: 246 GINTDLATM------VSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAG 299
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
YA G + ++ F M + D+ PN+I+++ +L ACA + + G+EI
Sbjct: 300 YAREGL------------SDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEI 347
Query: 285 HGYVLRHHIQLSTGVGIALISI----QGLGTGSFV-----------WNSLIDMYG----- 324
HG++LR+ L V AL+ + LG + W +I YG
Sbjct: 348 HGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYG 407
Query: 325 ----------RCGAIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCC 356
R I+ +E GW +F MM+ +EP E Y C
Sbjct: 408 SEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYAC 467
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLS 406
+VDLLARAG F+K MP EP + A C + +AE A H+FELEP +
Sbjct: 468 IVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN 527
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
+G KVH F+ GD+SH L
Sbjct: 528 TGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLA 587
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
+KI L + + +K+ G+ K + CGHSEK+A+AFG++S PG
Sbjct: 588 NKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKT 647
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RV KNLR+CGDCH K++SK K R+II+ D+ RFHHF DG+CSC +W
Sbjct: 648 VRVTKNLRVCGDCHEMAKFMSKMVK----RDIILRDSNRFHHFKDGSCSCRGHW 697
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
EI F + G+ A+E ++ + D++ T VL CA +K + G+ IH + +
Sbjct: 74 EICRFCELGNLRRAMELINQSPKPDLELRT--YCSVLQLCADLKSIQDGRRIHSIIQSND 131
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
+++ +G + L+ MY CG ++ EG R F+ + E +
Sbjct: 132 VEVDGVLG----------------SKLVFMYVTCGDLR--EGRRIFDKVANE-----KVF 168
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKM 377
+ +++ A+ G F ++L+ K+M
Sbjct: 169 LWNLLMNGYAKIGNFRESLSLFKRM 193
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 183/651 (28%), Positives = 269/651 (41%), Gaps = 222/651 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFLGM----------------FE 63
T + +F C +L NL LG Q+H+ I G VE C+ + M F+
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE-CSLVDMYAKCSADGSVDDCRKVFD 329
Query: 64 KMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDH 111
+M + +V SWT+++ G E +NLF +I +G +KAC L D
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---------- 158
RVGK V N+ V V+ MF+K RME A FE EK+
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+N+ ++ G++IH +K L +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG-LSCN 508
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+ Y+KC + A F+ ++ ++++SW +M ITGF ++G
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSM------------ITGFAKHGFA 556
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
LE F++MI+ ++PN ++ +L+AC+ V L
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHV--------------------------GL 590
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+S EGWR+F M +++ ++P ME Y CMVDLL R
Sbjct: 591 VS---------------------------EGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
Query: 364 AGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP--------L 405
AG D F+ MPF+ + N ++ + AAR + EL+P L
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Query: 406 SS-----------------------------------GKVHSFIAGDTSHSLVHKISEKL 430
S+ K+H F GDT+H H+I ++L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
Query: 431 MRLYSEIKKIGYMKRIPAC------------------GHSEKLALAFGLISTSPGSPLRV 472
RL +EIK+ GY+ HSEK+A+AFGLISTS P+RV
Sbjct: 744 DRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRV 803
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH+ KY+S REI++ D RFHHF DG CSC DYW
Sbjct: 804 FKNLRVCGDCHNAMKYISTVSG----REIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 131/329 (39%), Gaps = 95/329 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+VT++ + + C + + LG VHA LI +E + L +FE
Sbjct: 62 SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121
Query: 64 KMP---ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
M +R+V SW++MM Y G + + +F ++ G+ V D Y Y
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL-----------VPND-YCY 169
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
I+ AC F+ GR+ + L+K G
Sbjct: 170 TAVIR----ACSNSD----FVGVGRVTLGF------------LMKTGH-----------F 198
Query: 181 ESDLLVNNSLMDFYAKCR-YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
ESD+ V SL+D + K + A+ F K+ + ++V+W M IT Q
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM------------ITRCMQ 246
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G A+ FF M+ + + + +LS V +ACA+++ LGK++H + +R
Sbjct: 247 MGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS-------- 298
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGA 328
G V SL+DMY +C A
Sbjct: 299 ----------GLVDDVECSLVDMYAKCSA 317
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 191/689 (27%), Positives = 293/689 (42%), Gaps = 208/689 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMP 66
YA + Q C + +L+ G ++H +I G E F+ MFE+M
Sbjct: 148 YACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQ 207
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+++ SWT+++ Y G+ + + L + + G + A +++K R+G+
Sbjct: 208 HKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRS 267
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------SGE 152
++ Y FE V +LDM+ KCG +A +GE
Sbjct: 268 IHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGE 327
Query: 153 FEEK------------------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
EE +NL L+ G +H L K L+S++ V N
Sbjct: 328 SEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKL-LDKLKLDSNVSVMN 386
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+ Y+KC+ + +A F+ +++ + V+WNAM+ GYA G +E AL
Sbjct: 387 SLISMYSKCKRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKE------------ALN 433
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M ++ + +L GV+ A A + K IHG +R + + V AL+ +
Sbjct: 434 LFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYA 493
Query: 309 ----LGTGS-----------FVWNSLIDMYG---------------RCGAIQKN------ 332
+ T WN++ID YG + GA++ N
Sbjct: 494 KCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLS 553
Query: 333 ------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
EG F+ M+++Y +EP M+ Y MVDLL RAGQ DD NF+++MP +
Sbjct: 554 VISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIK 613
Query: 381 PSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------------- 408
P + C N ++ E AA+ LF+L+P G
Sbjct: 614 PGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVR 673
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
++H+F +G T+H KI L L EIK GY+
Sbjct: 674 TAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD 733
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K+ HSE+LA+AFGL++TSPG+ L + KNLR+CGDCH TKY+S
Sbjct: 734 SIHDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTG 793
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF +G+CSCGDYW
Sbjct: 794 ----REIIVRDLRRFHHFKNGSCSCGDYW 818
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 179/635 (28%), Positives = 264/635 (41%), Gaps = 189/635 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
MFE+MP+R++ SW +++ Y G+ V + + + G V A ++LK
Sbjct: 199 MFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKA 258
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
R+G+ ++ Y FE V +LD + KCG + A
Sbjct: 259 LRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDG 318
Query: 150 ---SGEFEEK------------------------DFSNLSLLKHGKEIHPHHLKKDDLES 182
+GE EE +NL L+ G+ +H L + +
Sbjct: 319 YAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVH-RLLDEKKIGF 377
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NSL+ Y+KC+ + +A F +K K +V+WNAM+ GYA G E
Sbjct: 378 DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNE--------- 428
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M D++P++ +L V+ A A + + K IHG +R + + V A
Sbjct: 429 ---ALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTA 485
Query: 303 LISIQG----LGTGS-----------FVWNSLIDMYG---------------RCGAIQKN 332
LI + T WN++ID YG + G+++ N
Sbjct: 486 LIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPN 545
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG YFE MK+ Y +EP M+ Y MVDLL RAG+ DD F+
Sbjct: 546 EITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFI 605
Query: 375 KKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---------------- 408
+ MP +P + C N ++ E A LF+L+P G
Sbjct: 606 QDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWD 665
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+VH+F +G T+H +I L L E+K G
Sbjct: 666 KVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAG 725
Query: 442 Y-------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
Y +K HSE+LA+AFGL++T G+ + + KNLR+CGDCH TKY
Sbjct: 726 YVPDTNSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKY 785
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S REII+ D RFHHF +G CSCGDYW
Sbjct: 786 ISLVTG----REIIVRDLRRFHHFKNGICSCGDYW 816
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 101/202 (50%), Gaps = 31/202 (15%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+EIH + + +S+L ++++ YAKCR ++ A+ F ++ Q+ LVSWN ++A
Sbjct: 158 LRRGREIHGMVIT-NGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVA 216
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA GF A++ +M + +P++I+L VL A A +K ++G+
Sbjct: 217 GYAQNGF------------ARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS 264
Query: 284 IHGYVLRHHIQLSTGVGIALIS--------------IQGLGTGSFV-WNSLIDMYGRCGA 328
IHGY R + V A++ +G+ + + V WN++ID Y + G
Sbjct: 265 IHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNG- 323
Query: 329 IQKNEGWRYFEMMKKEYNMEPA 350
+ E + F M E +EP
Sbjct: 324 -ESEEAFATFLKMLDE-GVEPT 343
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/213 (18%), Positives = 80/213 (37%), Gaps = 41/213 (19%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K+ ++ L L+ + K + A F ++ K V ++ ML GYA +
Sbjct: 69 KNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRD--- 125
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A+ F+ RM ++ P + +L + + G+EIHG V+
Sbjct: 126 ---------AVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI------- 169
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE-----------Y 345
G + F +++++Y +C I+ + ++ FE M + Y
Sbjct: 170 ---------TNGFQSNLFAMTAVVNLYAKCRQIE--DAYKMFERMPQRDLVSWNTVVAGY 218
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+ +V + AGQ D++ + +P
Sbjct: 219 AQNGFARRAVQVVLQMQEAGQKPDSITLVSVLP 251
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 182/691 (26%), Positives = 280/691 (40%), Gaps = 208/691 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C +L G VHA L G+ A +F++M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRVG 114
P R+ +W +++ Y G E V + + +E V AC++ +
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------------------- 153
++V+ + + F+ V +LD++ KCG ++ A F
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406
Query: 154 ---------------EEKDFSNLSLLK------------HGKEIHPHHLKKDDLESDLLV 186
E D +++S+L G+ +H L + LES++ V
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVH-ELLVRIGLESNVNV 465
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L+ Y KC+ +A F ++ K VSWNAM I G TQ G E A
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAM------------ILGCTQNGSSEDA 513
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ FSRM +++P++ +L ++ A A + + IHGY +R H+ V ALI +
Sbjct: 514 VRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDM 573
Query: 307 ---------------QGLGTGSFVWNSLIDMYGRCGAIQK-------------------- 331
WN++I YG G+ +
Sbjct: 574 YAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTF 633
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+EG YF MK++Y +EP ME Y MVDLL RAG+ + +F++KMP
Sbjct: 634 LSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMP 693
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSS--------------------- 407
EP + C N ++AE +A+ +FELEP
Sbjct: 694 MEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVAR 753
Query: 408 ----------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
++H+F +G T+H I +L +L EIK +GY+
Sbjct: 754 VRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPD 813
Query: 446 IPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
+ HSEKLA+A+GLI T+PG+ +++ KNLR+C DCH+ TK +S
Sbjct: 814 TDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLV 873
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REIIM D RFHHF DG CSCGDYW
Sbjct: 874 TG----REIIMRDIQRFHHFKDGKCSCGDYW 900
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 193/696 (27%), Positives = 289/696 (41%), Gaps = 210/696 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL--------IVCGVELCAFLGMFEKMPE-R 68
PD T++ L+ C L ++ G+ VH + ++ G L + FE++ E R
Sbjct: 220 PDCFTMSSVLL--ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREAR 277
Query: 69 NVFS---------WTSMMGMYNVLGYYEEIVNLFYLLID---------EGVYKACSELKD 110
VFS W +M+ Y LG +E V LF +ID +AC + D
Sbjct: 278 RVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGD 337
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
+VGK V+ Y+I FE + ++DM+ KCG + A F+ KD
Sbjct: 338 LQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLING 397
Query: 158 ----------------------------------FSNLSLLKHGKEIHPHHLKKDDLESD 183
FS L+ + G+ IH +K E++
Sbjct: 398 YTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFG-FEAE 456
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L++ NSL+D YAKC + FS + ++SWN ++A + D
Sbjct: 457 LIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASS------------VHFDDC 504
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ + M + P+ ++ G+L C+ + + GKEIHGY+ + + + +G AL
Sbjct: 505 TVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNAL 564
Query: 304 ISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK---------------- 331
I + GS W +LI +G G +K
Sbjct: 565 IEMYS-KCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPD 623
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG R+F+ MK +YN+EP ME Y C+VDLLAR+G F+
Sbjct: 624 SVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFI 683
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFEL---------------------- 402
MP +P ++ C N +IA+ ++ + EL
Sbjct: 684 LSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWD 743
Query: 403 ----------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
EP SS +V+ F GD S K+ + L L + K G
Sbjct: 744 QVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEG 803
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ KR CGHSE+LA+AFGL++T PGSPL V+KNLR+CGDCH+ TK
Sbjct: 804 YVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTK 863
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y++K +REI++ D RFH F DGACSCGD+W
Sbjct: 864 YITKI----MQREILVRDANRFHRFKDGACSCGDHW 895
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 144/361 (39%), Gaps = 94/361 (26%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
PD T+ + C ++ +LELG VH H + G E ++G
Sbjct: 118 QPD--AFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNA 175
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+FE+M R+ SW S++ Y G++E+ +++++ G+ C +
Sbjct: 176 RYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSS-------- 227
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
+ + CG +L +K G +H ++K
Sbjct: 228 --------------------VLLACG---------------SLMAVKEGVAVHGV-IEKI 251
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ D+++ N L+ Y K L+ A FSK+ K V+WN M+ GYA
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA------------ 299
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST- 297
Q G E +++ F MI P+ +S++ + AC Q ++GK +H Y++ + T
Sbjct: 300 QLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTV 358
Query: 298 ----------GVGIALISIQGLGT----GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
G L + + T S WNSLI+ Y + G + EG F+MMK
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYK--EGLESFKMMKM 416
Query: 344 E 344
E
Sbjct: 417 E 417
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 28/108 (25%)
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN+++ G FTQ AL +++ M + +QP+ + V+ +CA++
Sbjct: 89 WNSIIRALTHNGL------FTQ------ALGYYTEMREKKLQPDAFTFPSVINSCARILD 136
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+LG +H H +++ G + ++ N+LIDMY R
Sbjct: 137 LELGCIVH----EHAMEM------------GFESDLYIGNALIDMYSR 168
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/700 (26%), Positives = 288/700 (41%), Gaps = 210/700 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN TYA +L + +G+ +HAH IV GV F+G
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F+ MPER+ W +M+ ++ Y+E+ + +F ++D G V A +E
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------ 161
L+++R+G + + V ++ ++ KCG+ F++ D +L
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286
Query: 162 ------------------SLLKHGKEIH--------PHHLKKDDLESDLLVNN------- 188
LL G+ ++ P +L + L+ L+ N
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346
Query: 189 --------SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+L Y + ++ A F + +K L SWNAM++GY TQ
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY------------TQN 394
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A+ F M+ + PN ++++ +L+ACAQ+ +GK +HG + ++ + V
Sbjct: 395 GLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453
Query: 301 IALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK------------- 331
AL+ + GS V WN++I YG G ++
Sbjct: 454 TALVDMYA-KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI 512
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+EG F M Y +P E Y CMVD+L RAGQ + L
Sbjct: 513 PPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNAL 572
Query: 372 NFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------------- 408
F+++MP EP A C N ++A A++ LF+L+P + G
Sbjct: 573 EFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDR 632
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+ + F +GD SH I E L +L +++
Sbjct: 633 NFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMR 692
Query: 439 KIGYM---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+ GY K + HSEKLA+AFGLIST PG+ +R+IKNLR+C DCH
Sbjct: 693 EAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCH 752
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ TK++SK ER I++ D RFHHF +G CSCGDYW
Sbjct: 753 TATKFISKIT----ERVIVVRDANRFHHFKNGICSCGDYW 788
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA-----------HLIVCG 52
+ ++L + M +P+ TVT I C +L L +G VH ++
Sbjct: 399 RAISLFQEMMPQLSPNPVTVTS--ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTAL 456
Query: 53 VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V++ A G +F+ M ++NV +W +M+ Y + G+ +E + LFY ++ G+
Sbjct: 457 VDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI 512
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 184/690 (26%), Positives = 293/690 (42%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGM----------------FEKM 65
+ + + C L +G ++H L+ G ++L A G+ F++M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRM 196
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
PER++ SW +++ Y+ G + + L+ +E V A S L+ R+GK
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGK 256
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF-------------- 158
+++ Y + F+ + ++DM+ KCG ++ A F+ E++
Sbjct: 257 EIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ G+ IH ++ + L+ ++ V
Sbjct: 317 NPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELE-LDRNVSVV 375
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y KC+ + A F K++ + +VSWNAM I GF Q G AL
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAM------------ILGFAQNGRPIEAL 423
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FS+M ++P+T + V+ A A++ K IHG V+R+ + + V AL+ +
Sbjct: 424 NYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMY 483
Query: 308 GLGTGSFV---------------WNSLIDMYG---------------RCGAIQKN----- 332
+ WN++ID YG + G I+ N
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFL 543
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G + F MMK+ Y++EP+M+ Y MVDLL RAG+ ++ +F+ +MP
Sbjct: 544 SVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 380 EPSSAE------PC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P+ C N + AE A LFEL P G
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQV 663
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+VHSF +G T+H KI L +L +IK+ GY+
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDT 723
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K HSEKLA++FGL++T+ G+ + V KNLR+C DCH+ TKY+S
Sbjct: 724 NLILGLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVT 783
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF +GACSCGDYW
Sbjct: 784 G----REIIVRDMQRFHHFKNGACSCGDYW 809
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV--AHCKFSKIKQKHLVSWN 219
S LK + I P + K+ L + L L+ + CRY V A F I +K V +
Sbjct: 48 SSLKELRHILPL-IFKNGLYQEHLFQTKLVSLF--CRYGSVDEAARVFEPIDKKLNVLYY 104
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
ML G+A + D + AL+FF RM +++P + + +L C +
Sbjct: 105 TMLKGFA------------KVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELR 152
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+GKEIHG +++ +G + L ++ GL +MY +C Q +E + F+
Sbjct: 153 VGKEIHGLLVK------SGFSLDLFAMTGLE----------NMYAKCR--QVHEARKVFD 194
Query: 340 MM 341
M
Sbjct: 195 RM 196
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 182/700 (26%), Positives = 288/700 (41%), Gaps = 210/700 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN TYA +L + +G+ +HAH IV GV F+G
Sbjct: 107 TNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAEL 166
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F+ MPER+ W +M+ ++ Y+E+ + +F ++D G V A +E
Sbjct: 167 ARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE 226
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------ 161
L+++R+G + + V ++ ++ KCG+ F++ D +L
Sbjct: 227 LQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAM 286
Query: 162 ------------------SLLKHGKEIH--------PHHLKKDDLESDLLVNN------- 188
LL G+ ++ P +L + L+ L+ N
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346
Query: 189 --------SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+L Y + ++ A F + +K L SWNAM++GY TQ
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY------------TQN 394
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A+ F M+ + PN ++++ +L+ACAQ+ +GK +HG + ++ + V
Sbjct: 395 GLTDRAISLFQEMMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVS 453
Query: 301 IALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK------------- 331
AL+ + GS V WN++I YG G ++
Sbjct: 454 TALVDMYA-KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI 512
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+EG F M Y +P E Y CMVD+L RAGQ + L
Sbjct: 513 PPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNAL 572
Query: 372 NFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------------- 408
F+++MP EP A C N ++A A++ LF+L+P + G
Sbjct: 573 EFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDR 632
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+ + F +GD SH I E L +L +++
Sbjct: 633 NFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMR 692
Query: 439 KIGYM---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+ GY K + HSEKLA+AFGLIST PG+ +R+IKNLR+C DCH
Sbjct: 693 EAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCH 752
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ TK++SK ER I++ D RFHHF +G CSCGDYW
Sbjct: 753 TATKFISKIT----ERVIVVRDANRFHHFKNGICSCGDYW 788
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 20/116 (17%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA-----------HLIVCG 52
+ ++L + M +P+ TVT I C +L L +G VH ++
Sbjct: 399 RAISLFQEMMPQLSPNPVTVTS--ILSACAQLGALSIGKWVHGLIKSERLESNVYVSTAL 456
Query: 53 VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V++ A G +F+ M ++NV +W +M+ Y + G+ +E + LFY ++ G+
Sbjct: 457 VDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGI 512
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 189/708 (26%), Positives = 294/708 (41%), Gaps = 213/708 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M+ V + + + C LE G +VHA + G + ++G
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ + RNV SWT+M+ + G +E F +I+ G+
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
ACS + G+ + D++I + + V+ +L M+ KCG ++ A FE+ N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 161 L------------------------SLLKHGKEIHPHH---------------------- 174
+ +LLK G I P+
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEG--IKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 175 ---LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K LESDL V+N+L+ + C L A F+ + ++ LVSWN ++AG
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG------- 589
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
F Q+G + A ++F M ++ ++P+ I+ +G+L ACA + G+ +H +
Sbjct: 590 -----FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644
Query: 292 HIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGR---------- 325
VG LIS+ GS + W S+I Y +
Sbjct: 645 AFDCDVLVGTGLISMY-TKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALEL 703
Query: 326 ----------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GA+ EG +F+ MK E+N+EP ME Y CMVDL
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFG 762
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
RAG ++ + F+ KM EP S C N ++AE AA+ EL+P
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ GKVH+F + D +H +I +
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L RL+ E++++GY+ K HSE+LA+ +GL+ T P +P+ + KN
Sbjct: 883 LERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKN 942
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ TK++SK K R+II D+ RFHHF DG CSCGD+W
Sbjct: 943 LRVCGDCHTATKFISKITK----RQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 158/387 (40%), Gaps = 97/387 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--------- 59
+L+ +D ++ TY+ + Q C K NL G +++ H+ GV+ F+
Sbjct: 97 VLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYA 156
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+ M E++V+SW ++G Y G YEE L ++ + V
Sbjct: 157 KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV--------- 207
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ K + M+ NAC +D + ++ NL +LK G
Sbjct: 208 -KPDKRTFVSML------NACADARNVD---------------KGRELYNL-ILKAG--- 241
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
++DL V +L++ + KC + A F + + LV+W +M
Sbjct: 242 ---------WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM--------- 283
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
ITG ++G + A F RM + +QP+ ++ +L AC + + GK++H
Sbjct: 284 ---ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH----- 335
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
A + G T +V +++ MY +CG+++ + F+++K
Sbjct: 336 -----------ARMKEVGWDTEIYVGTAILSMYTKCGSME--DALEVFDLVKGR-----N 377
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + M+ A+ G+ D+ F KM
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 53/262 (20%)
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKH-----------------GKEIHPHHLKKD 178
VL+ K G+ A E D S++ + + G+ I+ +H+KK
Sbjct: 81 VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY-NHIKKS 139
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
++ D+ + N+L++ YAKC A F +++K + SWN +L GY G EE
Sbjct: 140 GVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE----- 194
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A + +M+Q ++P+ + +L ACA + G+E++ +L+
Sbjct: 195 -------AFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-------- 239
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
G T FV +LI+M+ +CG I + + F+ + + + M+
Sbjct: 240 --------AGWDTDLFVGTALINMHIKCGDI--GDATKVFDNLPTR-----DLVTWTSMI 284
Query: 359 DLLARAGQFDDTLNFMKKMPFE 380
LAR G+F N ++M E
Sbjct: 285 TGLARHGRFKQACNLFQRMEEE 306
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 201/718 (27%), Positives = 290/718 (40%), Gaps = 221/718 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG--------- 60
PD T+ + C K L G QVH ++ G E L F G
Sbjct: 137 PD--NFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMR 194
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F+KM ERNV SWTS++G Y G Y+E V+LF+ +++ G V AC++L+
Sbjct: 195 RVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQ 254
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------ 163
D ++G+ V + ++ E NA + ++DM++KCG ++ A F+E NL L
Sbjct: 255 DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMS 314
Query: 164 ------------------LKHG------------------------KEIHPHHLKKDDLE 181
LKHG K H + L+ + LE
Sbjct: 315 NYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLR-NGLE 373
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------- 233
V N++++ Y KC ++A F ++ K VSWN+++AG+ G E
Sbjct: 374 GWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM 433
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I Q + A+E F M + + +++ GV +AC + L K
Sbjct: 434 PDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAK 493
Query: 283 EIHGYVLRHHIQLSTGVGIALI----------------------------------SIQG 308
IHGY+ + I +G AL+ +++G
Sbjct: 494 WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEG 553
Query: 309 LGTGSF----------------VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
GTG+ V+ +L+ G ++ +GW F MK Y + P
Sbjct: 554 NGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVE--QGWHIFRSMKDIYGIAPQAV 611
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG + L+ + M EP+ C N DIA +AA + EL
Sbjct: 612 HYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISEL 671
Query: 403 EP--------LSS-----------------------------------GKVHSFIAGDTS 419
+P LS+ GK+ F GD S
Sbjct: 672 DPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDES 731
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H + I L + ++ IGY+ K HSEKLA+AF LIST
Sbjct: 732 HPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTG 791
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+RV KNLR+C DCHS K VSK+ REII+ DN RFH F G CSCGDYW
Sbjct: 792 QGMPIRVAKNLRICSDCHSFAKLVSKS----YSREIIVRDNNRFHFFQQGFCSCGDYW 845
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 16/100 (16%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
F I GF+ G G A+ F +++ P+ + VL+AC + G ++HG ++
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ G FV NSLI YG CG I
Sbjct: 167 K----------------MGFERDMFVENSLIHFYGECGEI 190
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 189/708 (26%), Positives = 294/708 (41%), Gaps = 213/708 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M+ V + + + C LE G +VHA + G + ++G
Sbjct: 299 LFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYT 358
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ + RNV SWT+M+ + G +E F +I+ G+
Sbjct: 359 KCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMS 418
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
ACS + G+ + D++I + + V+ +L M+ KCG ++ A FE+ N
Sbjct: 419 ILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN 478
Query: 161 L------------------------SLLKHGKEIHPHH---------------------- 174
+ +LLK G I P+
Sbjct: 479 VVAWNAMITAYVQHEQYDNALATFQALLKEG--IKPNSSTFTSILNVCKSSDSLELGKWV 536
Query: 175 ---LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K LESDL V+N+L+ + C L A F+ + ++ LVSWN ++AG
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAG------- 589
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
F Q+G + A ++F M ++ ++P+ I+ +G+L ACA + G+ +H +
Sbjct: 590 -----FVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEA 644
Query: 292 HIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGR---------- 325
VG LIS+ GS + W S+I Y +
Sbjct: 645 AFDCDVLVGTGLISMY-TKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALEL 703
Query: 326 ----------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GA+ EG +F+ MK E+N+EP ME Y CMVDL
Sbjct: 704 FYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFG 762
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
RAG ++ + F+ KM EP S C N ++AE AA+ EL+P
Sbjct: 763 RAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVI 822
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ GKVH+F + D +H +I +
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAE 882
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L RL+ E++++GY+ K HSE+LA+ +GL+ T P +P+ + KN
Sbjct: 883 LERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKN 942
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ TK++SK K R+II D+ RFHHF DG CSCGD+W
Sbjct: 943 LRVCGDCHTATKFISKITK----RQIIARDSNRFHHFKDGVCSCGDFW 986
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 158/387 (40%), Gaps = 97/387 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--------- 59
+L+ +D ++ TY+ + Q C K NL G +++ H+ GV+ F+
Sbjct: 97 VLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYA 156
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+ M E++V+SW ++G Y G YEE L ++ + V
Sbjct: 157 KCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV--------- 207
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ K + M+ NAC +D + ++ NL +LK G
Sbjct: 208 -KPDKRTFVSML------NACADARNVD---------------KGRELYNL-ILKAG--- 241
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
++DL V +L++ + KC + A F + + LV+W +M
Sbjct: 242 ---------WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSM--------- 283
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
ITG ++G + A F RM + +QP+ ++ +L AC + + GK++H
Sbjct: 284 ---ITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVH----- 335
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
A + G T +V +++ MY +CG+++ + F+++K
Sbjct: 336 -----------ARMKEVGWDTEIYVGTAILSMYTKCGSME--DALEVFDLVKGR-----N 377
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + M+ A+ G+ D+ F KM
Sbjct: 378 VVSWTAMIAGFAQHGRIDEAFLFFNKM 404
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 53/262 (20%)
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKH-----------------GKEIHPHHLKKD 178
VL+ K G+ A E D S++ + + G+ I+ +H+KK
Sbjct: 81 VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIY-NHIKKS 139
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
++ D+ + N+L++ YAKC A F +++K + SWN +L GY G EE
Sbjct: 140 GVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEE----- 194
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A + +M+Q ++P+ + +L ACA + G+E++ +L+
Sbjct: 195 -------AFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK-------- 239
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
G T FV +LI+M+ +CG I + + F+ + + + M+
Sbjct: 240 --------AGWDTDLFVGTALINMHIKCGDI--GDATKVFDNLPTR-----DLVTWTSMI 284
Query: 359 DLLARAGQFDDTLNFMKKMPFE 380
LAR G+F N ++M E
Sbjct: 285 TGLARHGRFKQACNLFQRMEEE 306
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 176/578 (30%), Positives = 249/578 (43%), Gaps = 176/578 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
CG +L L +FEKM ERNV SWTSM+ Y G + + L + EGV
Sbjct: 299 CG-DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITS 357
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC+ GKDV+DY+ + E N V ++DM+ KCG ME A+ F KD
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417
Query: 158 F------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
++LS L+ GKEIH + L ++ SD V N+L+D
Sbjct: 418 IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL-RNGYSSDRHVANALVDL 476
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC L +A F I K LVSW M+AGY + G+ G A+ F+ M
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY------------GNEAIATFNEM 524
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++P+ +S +L AC+ H L G
Sbjct: 525 RDAGIEPDEVSFISILYACS-----------------HSGLLEQG--------------- 552
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
W R+F +MK ++N+EP +E Y CMVDLL+R G F
Sbjct: 553 --W-------------------RFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEF 591
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSS---------------- 407
M+ +P P + A C + ++AE A +FELEP ++
Sbjct: 592 METLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKW 651
Query: 408 ---------------------------GKVHSFIAG-DTSHSLVHKISEKLMRLYSEIKK 439
GKV+ F++G ++SH I L ++ ++K+
Sbjct: 652 EEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKE 711
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G+ K + CGHSEKLA+AFGL++ P +RV KNLR+CGDCH
Sbjct: 712 EGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEM 771
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E REI++ D+ RFHHF DG CSC +W
Sbjct: 772 AKFMSK----ETRREIVLRDSNRFHHFKDGYCSCRGFW 805
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 161/336 (47%), Gaps = 57/336 (16%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG----------MFE 63
T TY + Q C L + G +VH+ + G++L +F +F+
Sbjct: 99 TKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFD 158
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDV-- 117
M ++NV+ W M+ Y +G ++E + LF +++++G+ ++ EL D +DV
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218
Query: 118 YDYMISIKFEGNACVKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++ MIS + N +R + M +++A+ +N L GK +H
Sbjct: 219 WNSMIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K E + +N+L+D Y+KC L A F K+ ++++VSW +M+AGY
Sbjct: 278 IK-SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY--------- 327
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
T+ G + A++ +M + ++ + ++++ +L ACA+ GK++H Y+ ++++
Sbjct: 328 ---TRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME 384
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ FV N+L+DMY +CG+++
Sbjct: 385 ----------------SNLFVCNALMDMYAKCGSME 404
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 118/298 (39%), Gaps = 41/298 (13%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+ +I F Q GD E A+E +++++ T VL CA +K F GK++H +
Sbjct: 69 YNAKILHFCQLGDLENAMELICMCQKSELETKT--YGSVLQLCAGLKSFTDGKKVHSIIK 126
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ + + +G+ L+S Y CG ++ EG R F+ M+K+
Sbjct: 127 SNSVGVDGALGLKLVSF----------------YATCGDLK--EGRRVFDTMEKK----- 163
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK 409
+ + MV A+ G F +++ K M E P+ A L + + +S
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMV--EKGIEGKRPESAFELFDKLCDRDVIS--- 218
Query: 410 VHSFIAGDTSHSLVHK---ISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSP 466
+S I+G S+ L + I +++M L ++ + + C +S L+L + S +
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278
Query: 467 GSPLRVIKNL--------RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
S N CGD + K +R MI Y DGA
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------- 52
V+K++ + PD + T A + C L+ LE G ++H +++ G
Sbjct: 414 VVKDIISWNTMIGELKPD--SRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN 471
Query: 53 --VEL---CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V+L C LG+ F+ +P +++ SWT M+ Y + GY E + F + D G+
Sbjct: 472 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 74/186 (39%), Gaps = 32/186 (17%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGV------ 53
LLQ M+ V I C + +L+ G VH ++L VC
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398
Query: 54 ---ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+ A +F M +++ SW +M+G V AC+ L
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACV-----------LPACASLSA 447
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG 167
GK+++ Y++ + + V ++D+++KCG + +A F+ KD + +++ G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAG 507
Query: 168 KEIHPH 173
+H +
Sbjct: 508 YGMHGY 513
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 271/632 (42%), Gaps = 176/632 (27%)
Query: 24 TYALIFQRCP--KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T +F+R P +++ + ++ HL ++L L FE MP+R++ SW +M+ YN
Sbjct: 111 TATTVFERMPVRSVSSWNAMVSLNTHL--GRMDLAESL--FESMPDRSIVSWNAMIAGYN 166
Query: 82 VLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
G + + LF ++ E V AC+ L + R+GK V+ Y++ + N+
Sbjct: 167 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS 226
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN-- 188
V ++ + K G +E A + +E+DL V +
Sbjct: 227 QVTNALISTYAKSGSVENA-----------------------RRIMDQSMETDLNVISFT 263
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L++ Y K ++ A F + + +V+W AM+ GY Q G + A++
Sbjct: 264 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY------------EQNGRNDEAID 311
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F MI +PN+ +L+ VL+ CA + GK+IH +R ++ S+ V A+I++
Sbjct: 312 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 371
Query: 309 LGTGSF-----------------VWNSLIDMYGRCGAIQK-------------------- 331
+GSF W S+I + G ++
Sbjct: 372 R-SGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 430
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
NEG RY++ +K E+ + P M Y CMVDLLARAG F + F+++MP
Sbjct: 431 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 490
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------------- 408
EP + C N ++AE AA L ++P +SG
Sbjct: 491 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 550
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K+H F A D H + R++ EIK G++
Sbjct: 551 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 610
Query: 446 IPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ + HSEKLA+AFGLIST + LRV+KNLR+C DCH+ K +SK
Sbjct: 611 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 670
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D RFHHF DG CSC DYW
Sbjct: 671 VT----DREIIVRDATRFHHFRDGLCSCKDYW 698
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 46/257 (17%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
G+F +MPER+ SWT M+ N G + E + + +G V +C+ +
Sbjct: 13 GVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQ 72
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
VG+ V+ +++ + V VL+M+ KCG E A+ FE ++S
Sbjct: 73 AGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVS 132
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
++ HL + DL L F + + +VSWNAM+AGY
Sbjct: 133 LNT-HLGRMDLAESL----------------------FESMPDRSIVSWNAMIAGY---- 165
Query: 230 FREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G AL+ FSRM+ ++ M P+ +++ VL+ACA + ++GK++H Y+
Sbjct: 166 --------NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 217
Query: 289 LRHHIQLSTGVGIALIS 305
LR + ++ V ALIS
Sbjct: 218 LRTEMAYNSQVTNALIS 234
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 35/186 (18%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
+AK L A F+++ ++ VSW M+ G G ++G+ A++
Sbjct: 1 MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG---------RFGE---AIKTLLD 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M P +L+ VL++CA + +G+++H +V++ GLG+
Sbjct: 49 MTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK----------------LGLGSC 92
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
V NS+++MYG+CG FE M ++ + MV L G+ D +
Sbjct: 93 VPVANSVLNMYGKCG--DSETATTVFERMPVR-----SVSSWNAMVSLNTHLGRMDLAES 145
Query: 373 FMKKMP 378
+ MP
Sbjct: 146 LFESMP 151
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 175/578 (30%), Positives = 250/578 (43%), Gaps = 176/578 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
CG +L L +FEKM ERNV SWTSM+ Y G+ + + L + EGV
Sbjct: 299 CG-DLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITS 357
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC+ GKDV+DY+ + N V ++DM+ KCG ME A+ F KD
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKD 417
Query: 158 F------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
++LS L+ GKEIH + L+ + SD V N+L+D
Sbjct: 418 IISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILR-NGYSSDRHVANALVDL 476
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC L +A F I K LVSW M+AGY + G+ G A+ F+ M
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY------------GNEAIATFNEM 524
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++P+ +S +L AC+ H L G
Sbjct: 525 RDAGIEPDEVSFISILYACS-----------------HSGLLEQG--------------- 552
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
W R+F +MK ++N+EP +E Y CMVDLL+R G F
Sbjct: 553 --W-------------------RFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKF 591
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSS---------------- 407
++ +P P + A C + ++AE A +FELEP ++
Sbjct: 592 IETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKR 651
Query: 408 ---------------------------GKVHSFIAG-DTSHSLVHKISEKLMRLYSEIKK 439
G+V+ F++G ++SH KI L ++ ++K+
Sbjct: 652 EEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 711
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY K + CGHSEKLA+AFGL++ P +RV KNLR+CGDCH
Sbjct: 712 EGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEM 771
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E REI++ D+ RFHHF DG CSC +W
Sbjct: 772 AKFMSK----ETRREIVLRDSNRFHHFKDGYCSCRGFW 805
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 159/336 (47%), Gaps = 57/336 (16%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG----------MFE 63
T TY + Q C L +L G +VH+ + G++L +F +F+
Sbjct: 99 TKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDV-- 117
M ++NV+ W M+ Y +G ++E + LF +++++G+ ++ SEL D +DV
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218
Query: 118 YDYMISIKFEGNACVKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++ MIS + N +R + M +++A+ +N L GK +H
Sbjct: 219 WNSMIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K E + +N+L+D Y+KC L A F K+ ++++VSW +M+AGY G
Sbjct: 278 IK-SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDG----- 331
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+ DG A+ +M + ++ + ++++ +L ACA+ GK++H Y
Sbjct: 332 -----WSDG--AIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDY------- 377
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
I + + FV N+L+DMY +CG+++
Sbjct: 378 ---------IKANNMASNLFVCNALMDMYAKCGSME 404
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 118/298 (39%), Gaps = 41/298 (13%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+ +I F Q GD E A+E +++++ T VL CA +K GK++H +
Sbjct: 69 YNAKILHFCQLGDLENAMELVCMCQKSELETKT--YGSVLQLCAGLKSLTDGKKVHSIIK 126
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ + + +G+ L+S Y CG ++ EG R F+ M+K+
Sbjct: 127 SNSVGVDEALGLKLVSF----------------YATCGDLK--EGRRVFDTMEKK----- 163
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK 409
+ + MV A+ G F +++ K M E P+ A L + + +S
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMV--EKGIEGKRPESASELFDKLCDRDVIS--- 218
Query: 410 VHSFIAGDTSHSLVHK---ISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSP 466
+S I+G S+ L + I +++M L ++ + + C +S L+L + S +
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278
Query: 467 GSPLRVIKNL--------RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
S N CGD + K +R MI Y + DGA
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGA 336
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------- 52
V+K++ + PD + T A I C L+ LE G ++H +++ G
Sbjct: 414 VVKDIISWNTMVGELKPD--SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN 471
Query: 53 --VEL---CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V+L C LG+ F+ +P +++ SWT M+ Y + GY E + F + D G+
Sbjct: 472 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 32/187 (17%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGVEL--- 55
+LLQ M+ V I C + +L+ G VH ++L VC +
Sbjct: 338 ILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMY 397
Query: 56 --CAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK 109
C + +F M +++ SW +M+G + AC+ L
Sbjct: 398 AKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACI-----------LPACASLS 446
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKH 166
GK+++ Y++ + + V ++D+++KCG + +A F+ KD + +++
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506
Query: 167 GKEIHPH 173
G +H +
Sbjct: 507 GYGMHGY 513
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 271/632 (42%), Gaps = 176/632 (27%)
Query: 24 TYALIFQRCP--KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T +F+R P +++ + ++ HL ++L L FE MP+R++ SW +M+ YN
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHL--GRMDLAESL--FESMPDRSIVSWNAMIAGYN 272
Query: 82 VLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
G + + LF ++ E V AC+ L + R+GK V+ Y++ + N+
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS 332
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN-- 188
V ++ + K G +E A + +E+DL V +
Sbjct: 333 QVTNALISTYAKSGSVENA-----------------------RRIMDQSMETDLNVISFT 369
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L++ Y K ++ A F + + +V+W AM+ GY Q G + A++
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY------------EQNGRNDEAID 417
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F MI +PN+ +L+ VL+ CA + GK+IH +R ++ S+ V A+I++
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYA 477
Query: 309 LGTGSF-----------------VWNSLIDMYGRCGAIQK-------------------- 331
+GSF W S+I + G ++
Sbjct: 478 R-SGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
NEG RY++ +K E+ + P M Y CMVDLLARAG F + F+++MP
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------------- 408
EP + C N ++AE AA L ++P +SG
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K+H F A D H + R++ EIK G++
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 716
Query: 446 IPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ + HSEKLA+AFGLIST + LRV+KNLR+C DCH+ K +SK
Sbjct: 717 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D RFHHF DG CSC DYW
Sbjct: 777 VT----DREIIVRDATRFHHFRDGLCSCKDYW 804
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 119/257 (46%), Gaps = 46/257 (17%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
G+F +MPER+ SWT M+ N G + E + + +G V +C+ +
Sbjct: 119 GVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQ 178
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
VG+ V+ +++ + V VL+M+ KCG E A+ FE ++S
Sbjct: 179 AGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVS 238
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
++ HL + DL L F + + +VSWNAM+AGY
Sbjct: 239 LNT-HLGRMDLAESL----------------------FESMPDRSIVSWNAMIAGY---- 271
Query: 230 FREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G AL+ FSRM+ ++ M P+ +++ VL+ACA + ++GK++H Y+
Sbjct: 272 --------NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323
Query: 289 LRHHIQLSTGVGIALIS 305
LR + ++ V ALIS
Sbjct: 324 LRTEMAYNSQVTNALIS 340
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ +AK L A F+++ ++ VSW M+ G G ++G+ A+
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG---------RFGE---AI 149
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ M P +L+ VL++CA + +G+++H +V++
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK----------------L 193
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GLG+ V NS+++MYG+CG FE M ++ + MV L G+
Sbjct: 194 GLGSCVPVANSVLNMYGKCG--DSETATTVFERMPVR-----SVSSWNAMVSLNTHLGRM 246
Query: 368 DDTLNFMKKMP 378
D + + MP
Sbjct: 247 DLAESLFESMP 257
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 176/578 (30%), Positives = 248/578 (42%), Gaps = 176/578 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
CG +L L +FEKM ERNV SWTSM+ Y G + + L + EGV
Sbjct: 299 CG-DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITS 357
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC+ GKDV+DY+ + E N V ++DM+ KCG ME A+ F KD
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKD 417
Query: 158 F------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
++LS L+ GKEIH + L ++ SD V N+L+D
Sbjct: 418 IISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYIL-RNGYSSDRHVANALVDL 476
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC L +A F I K LVSW M+AGY + G+ G A+ F+ M
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGY------------GNEAIATFNEM 524
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++P+ +S +L AC+ H L G
Sbjct: 525 RDAGIEPDEVSFISILYACS-----------------HSGLLEQG--------------- 552
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
W R+F +MK ++N+EP +E Y CMVDLL+R G F
Sbjct: 553 --W-------------------RFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEF 591
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSS---------------- 407
++ +P P + A C + ++AE A +FELEP +S
Sbjct: 592 IETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKW 651
Query: 408 ---------------------------GKVHSFIAG-DTSHSLVHKISEKLMRLYSEIKK 439
GKV+ F++G ++SH I L ++ ++K+
Sbjct: 652 EEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKE 711
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G+ K + CGHSEKLA+AFGL++ P +RV KNLR+CGDCH
Sbjct: 712 EGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEM 771
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E REI++ D RFHHF DG CSC +W
Sbjct: 772 AKFMSK----ETRREIVLRDPNRFHHFKDGYCSCRGFW 805
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 162/336 (48%), Gaps = 57/336 (16%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG----------MFE 63
T TY+ + Q C L + G +VH+ + G++L +F +F+
Sbjct: 99 TKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDV-- 117
M ++NV+ W M+ Y +G ++E + LF +++++G+ ++ EL D +DV
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218
Query: 118 YDYMISIKFEGNACVKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++ MIS + N +R + M +++A+ +N L GK +H
Sbjct: 219 WNSMIS-GYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K E + +N+L+D Y+KC L A F K+ ++++VSW +M+AGY
Sbjct: 278 IK-SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY--------- 327
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
T+ G + A++ +M + ++ + ++++ +L ACA+ GK++H Y+ ++++
Sbjct: 328 ---TRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNME 384
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ FV N+L+DMY +CG+++
Sbjct: 385 ----------------SNLFVCNALMDMYAKCGSME 404
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 41/298 (13%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+ +I F Q GD E A+E +++++ T S VL CA +K F GK++H +
Sbjct: 69 YNAKILHFCQLGDLENAMELICMCKKSELETKT--YSSVLQLCAGLKSFTDGKKVHSIIK 126
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ + + +G+ L+S Y CG ++ EG R F+ M+K+
Sbjct: 127 SNSVGVDEALGLKLVSF----------------YATCGDLK--EGRRVFDTMEKK----- 163
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK 409
+ + MV A+ G F +++ K M E P+ A L + + +S
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMV--EKGIEGKRPESAFELFDKLCDRDVIS--- 218
Query: 410 VHSFIAGDTSHSLVHK---ISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSP 466
+S I+G S+ L + I +++M L ++ + + C +S L+L + S +
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278
Query: 467 GSPLRVIKNL--------RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
S N CGD + K +R MI Y DGA
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGA 336
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------- 52
V+K++ + PD + T A + C L+ LE G ++H +++ G
Sbjct: 414 VVKDIISWNTMIGELKPD--SRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN 471
Query: 53 --VEL---CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V+L C LG+ F+ +P +++ SWT M+ Y + GY E + F + D G+
Sbjct: 472 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 32/184 (17%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGV------ 53
LLQ M+ V I C + +L+ G VH ++L VC
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398
Query: 54 ---ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+ A +F M +++ SW +M+G V AC+ L
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACV-----------LPACASLSA 447
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG 167
GK+++ Y++ + + V ++D+++KCG + +A F+ KD + +++ G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAG 507
Query: 168 KEIH 171
+H
Sbjct: 508 YGMH 511
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 173/632 (27%), Positives = 271/632 (42%), Gaps = 176/632 (27%)
Query: 24 TYALIFQRCP--KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T + +F+R P +++ + ++ HL ++L L FE MP R++ SW +M+ YN
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHL--GRMDLAESL--FESMPGRSIVSWNAMIAGYN 272
Query: 82 VLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
G + + LF ++ E V AC+ L + R+GK V+ Y++ + N+
Sbjct: 273 QNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS 332
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN-- 188
V ++ + K G +E A + +E+DL V +
Sbjct: 333 QVTNALISTYAKSGSVENA-----------------------RRIMDQSMETDLNVISFT 369
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L++ Y K ++ A F + + +V+W AM+ GY Q G + A++
Sbjct: 370 ALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY------------EQNGRNDEAID 417
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F MI +PN+ +L+ VL+ CA + GK+IH +R ++ S+ V A+I++
Sbjct: 418 LFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYA 477
Query: 309 LGTGSF-----------------VWNSLIDMYGRCGAIQK-------------------- 331
+GSF W S+I + G ++
Sbjct: 478 R-SGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITY 536
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
NEG RY++ +K E+ + P M Y CMVDLLARAG F + F+++MP
Sbjct: 537 VGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMP 596
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------------- 408
EP + C N ++AE AA L ++P +SG
Sbjct: 597 VEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAAR 656
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K+H F A D H + R++ EIK G++
Sbjct: 657 IWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPD 716
Query: 446 IPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ + HSEKLA+AFGLIST + LRV+KNLR+C DCH+ K +SK
Sbjct: 717 LQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISK 776
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D RFHHF DG CSC DYW
Sbjct: 777 VT----DREIIVRDATRFHHFRDGLCSCKDYW 804
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 119/257 (46%), Gaps = 46/257 (17%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
G+F +MPER+ SWT M+ N G + E + + +G V +C+ +
Sbjct: 119 GVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQ 178
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
VG+ V+ +++ + V VL+M+ KCG E AS FE ++S
Sbjct: 179 AGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVS 238
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
++ HL + DL L F + + +VSWNAM+AGY
Sbjct: 239 LNT-HLGRMDLAESL----------------------FESMPGRSIVSWNAMIAGY---- 271
Query: 230 FREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G AL+ FSRM+ ++ M P+ +++ VL+ACA + ++GK++H Y+
Sbjct: 272 --------NQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323
Query: 289 LRHHIQLSTGVGIALIS 305
LR + ++ V ALIS
Sbjct: 324 LRTEMAYNSQVTNALIS 340
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ +AK L A F+++ ++ VSW M+ G G ++G+ A+
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAG---------RFGE---AI 149
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ M P +L+ VL++CA + +G+++H +V++
Sbjct: 150 KTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVK----------------L 193
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GLG+ V NS+++MYG+CG + FE M ++ + MV L G+
Sbjct: 194 GLGSCVPVANSVLNMYGKCGDAETAS--TVFERMPVR-----SVSSWNAMVSLNTHLGRM 246
Query: 368 DDTLNFMKKMP 378
D + + MP
Sbjct: 247 DLAESLFESMP 257
>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial-like [Vitis vinifera]
Length = 678
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 176/637 (27%), Positives = 276/637 (43%), Gaps = 193/637 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+K P+ V +W +M+ Y+ G E ++L++ + EGV KAC+ D
Sbjct: 61 VFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLD 120
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF--------- 158
R G++ + + + + V VL+++ KCG+M+ A F++ +D
Sbjct: 121 LRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITG 180
Query: 159 ------------------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
+ L K G IH + ++KD +
Sbjct: 181 LAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDII-M 239
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D++V SL+D YAK +L++A C F ++ K+++SW+A+++G+A GF
Sbjct: 240 DVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGF------------ 287
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR--HHIQLSTGVG 300
AL+ M +P+++SL VL AC+QV KLGK +HGY++R H +S+
Sbjct: 288 AGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAV 347
Query: 301 IALISIQGLGT------------GSFVWNSLIDMYG------------------------ 324
I + S G + S WN++I YG
Sbjct: 348 IDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDH 407
Query: 325 -----------RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
G ++K W F +M EY ++P+ + Y CMVDLL+RAG+ ++
Sbjct: 408 ATFASLLSAFSHSGLVEKGRYW--FSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQEL 465
Query: 374 MKKMPFEPSSA------EPCNPD----IAEHAARHLFELEPLS----------------- 406
++ M EP A C I E AA+ + EL P
Sbjct: 466 IESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRW 525
Query: 407 --------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+GK+H+F+ D SH +I + L +L E+K +
Sbjct: 526 DEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAM 585
Query: 441 GYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + C HSE+LA+AFGL++T PG+ L + KNLR+CGDCH T
Sbjct: 586 GYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEAT 645
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK REI++ D RFHHF DG CSCGDYW
Sbjct: 646 KFISKIV----NREIVVRDVKRFHHFKDGVCSCGDYW 678
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 35/191 (18%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N L+ YA+ +++ A F K Q + +WNAM+ Y+ G E A
Sbjct: 42 NAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFE------------A 89
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L + RM ++P++ + + VL AC + + G+E R +
Sbjct: 90 LSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEE----TWRQAVD------------ 133
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
QG G FV +++++Y +CG + +E R F+ M + + + M+ LA+ GQ
Sbjct: 134 QGYGDDVFVGAAVLNLYAKCGKM--DEAMRVFDKMGRR-----DLVCWTTMITGLAQNGQ 186
Query: 367 FDDTLNFMKKM 377
+ ++ ++M
Sbjct: 187 AREAVDIYRQM 197
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 41/167 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLI-----------VCGVELCAFLG-------MFEKMPERN 69
+ Q C L + ++G+ +H ++I V++ A G +F +M +N
Sbjct: 212 LIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKN 271
Query: 70 VFSWTSMMGMY-------NVL---------GYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
V SW++++ + N L GY + V+L +L+ ACS++ ++
Sbjct: 272 VISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLL------ACSQVGFLKL 325
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
GK V+ Y++ + + V+DM+ KCG + A F++ F +
Sbjct: 326 GKSVHGYIVR-RLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRD 371
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 173/578 (29%), Positives = 255/578 (44%), Gaps = 178/578 (30%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
FEKM ++ V SWTS++ Y G Y++ + LFY E++ V DVY M
Sbjct: 712 FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFY------------EMESKGVSPDVYS-M 758
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
S+ +AC CG L G+++H ++++K+++
Sbjct: 759 TSVL---HACA----------CGNS-----------------LDKGRDVH-NYIRKNNMA 787
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
L V+N+LMD YAKC ++ A+ FS+I K +VSWN M+ GY+ E
Sbjct: 788 LCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNE-------- 839
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ F+ M Q + +P+ I+++ +L AC + ++G+ IHG +LR+ V
Sbjct: 840 ----ALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN 894
Query: 302 ALISIQGLGTGSFV----------------WNSLID---MYG------------RCGAIQ 330
ALI + + GS V W +I M+G R I+
Sbjct: 895 ALIDMY-VKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIK 953
Query: 331 K------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
NEGW +F M E NMEP +E Y CMVDLLAR G N
Sbjct: 954 PDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYN 1013
Query: 373 FMKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG-------------- 408
++ MP +P + A C + ++AE A H+FELEP ++G
Sbjct: 1014 LIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEK 1073
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K +F++ DT+H I L L ++K
Sbjct: 1074 WEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKN 1133
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G+ K + CGHSEKLA+AFG+++ G +RV KNLR+C DCH
Sbjct: 1134 EGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEM 1193
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK + REII+ D+ RFHHF DG CSC D+W
Sbjct: 1194 AKFMSKTTR----REIILRDSNRFHHFKDGFCSCRDFW 1227
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 72/271 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+++ +R+V SW SM+ + G+ + F ++ RVG D+
Sbjct: 610 LFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLI------------LRVGVDLATL 657
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ S+ AC +N+ L G+ +H +K
Sbjct: 658 VNSVA----AC---------------------------ANVGSLSLGRALHGQGVKAC-F 685
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+++ NN+L+D Y+KC L A F K+ QK +VSW +++A Y G ++
Sbjct: 686 SREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDD------- 738
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ F M + P+ S++ VL ACA G+++H Y+ ++++ L V
Sbjct: 739 -----AIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
N+L+DMY +CG++++
Sbjct: 794 ----------------NALMDMYAKCGSMEE 808
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 174/578 (30%), Positives = 250/578 (43%), Gaps = 176/578 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
CG +L L +FEKM ERNV SWTSM+ Y G + + L + EGV
Sbjct: 299 CG-DLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTS 357
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC+ GKDV+DY+ + E N V ++DM+ KCG M+ A+ F KD
Sbjct: 358 ILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKD 417
Query: 158 F------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
++LS L+ GKEIH + L+ + SD V N+L+D
Sbjct: 418 IISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILR-NGYSSDRHVANALVDL 476
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC L +A F I K LVSW M++GY + G+ G A+ F+ M
Sbjct: 477 YVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGY------------GNEAIATFNEM 524
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++P+ +S +L AC+ H L G
Sbjct: 525 RDAGIEPDEVSFISILYACS-----------------HSGLLEQG--------------- 552
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
W R+F +MK ++N+EP +E Y CMVDLL+R G F
Sbjct: 553 --W-------------------RFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEF 591
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSS---------------- 407
++ +P P + A C + ++AE A +FELEP ++
Sbjct: 592 IETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKW 651
Query: 408 ---------------------------GKVHSFIAG-DTSHSLVHKISEKLMRLYSEIKK 439
GKV+ F++G ++SH KI L ++ ++K+
Sbjct: 652 EEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKE 711
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY K + CGHSEKLA+AFGL++ P +RV KNLR+CGDCH
Sbjct: 712 EGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEM 771
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E REI++ D+ RFHHF +G CSC +W
Sbjct: 772 AKFMSK----ETRREIVLRDSNRFHHFKNGYCSCRGFW 805
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 159/336 (47%), Gaps = 57/336 (16%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FE 63
T TY+ + Q C +L G +VH+ + V + LG+ F+
Sbjct: 99 TKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDV-- 117
M ++NV+ W M+ Y +G ++E + LF +++++G+ ++ SEL D +DV
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218
Query: 118 YDYMISIKFEGNACVKR--PVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++ MIS + N +R + + G +++A+ +N L GK +H
Sbjct: 219 WNSMIS-GYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLA 277
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K E + +N+L+D Y+KC L A F K+ ++++VSW +M+AGY
Sbjct: 278 IK-STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGY--------- 327
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
T+ G + A+ +M + ++ + ++ + +L ACA+ GK++H Y+ ++++
Sbjct: 328 ---TRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNME 384
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ FV N+L+DMY +CG++
Sbjct: 385 ----------------SNLFVCNALMDMYTKCGSMD 404
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 20/118 (16%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------- 52
V+K++ + PD + T A I C L+ LE G ++H +++ G
Sbjct: 414 VVKDIISWNTMIGELKPD--SRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN 471
Query: 53 --VEL---CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
V+L C LG+ F+ +P +++ SWT M+ Y + GY E + F + D G+
Sbjct: 472 ALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGI 529
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCGVEL---- 55
LLQ M+ V I C + +L+ G VH ++L VC +
Sbjct: 339 LLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYT 398
Query: 56 -CAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
C + +F M +++ SW +M+G + AC+ L
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACI-----------LPACASLSA 447
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG 167
GK+++ Y++ + + V ++D+++KCG + +A F+ KD + +++ G
Sbjct: 448 LERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISG 507
Query: 168 KEIHPH 173
+H +
Sbjct: 508 YGMHGY 513
>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
Length = 644
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 158/582 (27%), Positives = 264/582 (45%), Gaps = 135/582 (23%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ + C + +L G VH +I G+ ++++ ++M MY+ E
Sbjct: 112 VLKSCTLMKDLRFGESVHGCIIRLGMGF-------------DLYTCNALMNMYSKFWSLE 158
Query: 88 EIVNLFYLLIDEG----VYKACSELKDHRVG-----------KDVYDYMISIKFEGNACV 132
E VN + + DEG VY E + + +G +D+ + I +
Sbjct: 159 E-VNTYKKVFDEGKTSDVYSK-KEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
L M + G ++ F F+ L GKEIH + ++ + ++D+ + +
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR-NGYDADVFIGS 275
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D YAKC + + F + Q +SWN+++AG G +E L+
Sbjct: 276 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE------------GLK 323
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
FF +M+ ++PN +S S ++ ACA + LGK++HGY++R ++G
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR---------------MEG 368
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+ + +++ G + +E W+YF M ++Y + P +E Y + DLL R G+ +
Sbjct: 369 VKPNYVAFMAVLTACSHAGLV--DEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLE 426
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
+ F+ M EP+ + C N ++AE ++ LF ++P + G
Sbjct: 427 EAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYS 486
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
KVH+F+AGD SH +I+E L L
Sbjct: 487 AAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLE 546
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
++++ GY+ KR C HSE+LA+ FG+IST G+ +RV KNLR+C D
Sbjct: 547 QMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVD 606
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ TK++SK REI++ DN RFHHF DG CSCGD+W
Sbjct: 607 CHTATKFISKIVG----REIVVRDNSRFHHFKDGKCSCGDFW 644
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/185 (17%), Positives = 78/185 (42%), Gaps = 38/185 (20%)
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
L+ +N++ + ++ I +T +G +L FF +M+ + P+ VL +C
Sbjct: 59 LLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTL 118
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+K + G+ +HG ++R G+G + N+L++MY + ++++
Sbjct: 119 MKDLRFGESVHGCIIR----------------LGMGFDLYTCNALMNMYSKFWSLEEVNT 162
Query: 335 WR--------------------YFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLN 372
++ Y ++K + M P + + ++ A+ G +D L
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222
Query: 373 FMKKM 377
+++M
Sbjct: 223 MVREM 227
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 163/557 (29%), Positives = 252/557 (45%), Gaps = 157/557 (28%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V K+ + L D +G+ ++ ++ + E ++ V+ ++DM++K G + F+E
Sbjct: 144 VLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESP--- 200
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
+++ ES +L+ N L++ K L A F + +++ SWN+
Sbjct: 201 ---------------QRNKAES-ILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNS 244
Query: 221 MLAGYALGG-------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
++ G+ G + I GF+Q GD E AL F RM++ ++PN
Sbjct: 245 LINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPN 304
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------I 306
+++ L AC ++ ++G+ IH Y+ + QL+ G+G AL+ +
Sbjct: 305 DLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFV 364
Query: 307 QGLGTGSFVWNSLI---------DMYGRCGAIQK------------------------NE 333
+ G W+ +I D +C K ++
Sbjct: 365 ETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQ 424
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----SAEPC-- 387
G +FE M+ +Y++EP M+ Y +VDLL RAG+ D+ L+F++ MP P A C
Sbjct: 425 GLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCAC 484
Query: 388 ----NPDIAEHAARHLFELEP--------LSS---------------------------- 407
N ++AE A L +LEP LS+
Sbjct: 485 RAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPG 544
Query: 408 -------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRI 446
G+VHSF+AGD +H +IS KL + + K+ GYM K
Sbjct: 545 WSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKED 604
Query: 447 PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
HSEKLALAFGLIST+PGS +R++KNLR+CGDCHS KY SK + REII+ D
Sbjct: 605 ALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSR----REIILRDI 660
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF DG CSCGDYW
Sbjct: 661 KRFHHFKDGTCSCGDYW 677
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 186/695 (26%), Positives = 290/695 (41%), Gaps = 208/695 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------LCAFLGM---- 61
PD T++ L + C L ++E G +H + G++ C F G+
Sbjct: 273 PDSYTMSSVL--RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 330
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKD 110
F+KM R+ SW +M+ Y+ +G YEE + LF ++++ + +AC L D
Sbjct: 331 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGD 390
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
GK V+DYMI+ +E + +++M+ KCG +
Sbjct: 391 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 450
Query: 147 EMASGEFEE--KDF---------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+ +G F+E K F + L L GKE+H L K S+
Sbjct: 451 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCD-LAKMGFNSN 509
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V+N+L+D YAKC + + F +K + +++WN ++A D
Sbjct: 510 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS------------CVHSEDC 557
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
L SRM + P+ ++ +L C+ + + GKEIHG + + ++ VG L
Sbjct: 558 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 617
Query: 304 ISIQ---GLGTGSF------------VWNSLIDMYGRCGAIQK----------------- 331
I + G SF W +LI G G +K
Sbjct: 618 IEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDH 677
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG YF MKK+Y +EP +E Y C+VDLL+R+ D +F+
Sbjct: 678 VAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFIL 737
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------------- 408
MP +P S+ C + +IA+ + + EL P +G
Sbjct: 738 SMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQ 797
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KV+ F G ++++ L L + K GY
Sbjct: 798 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGY 857
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ KR CGHSE+LA+AFGL++T PG+PL+V+KNLR+C DCH+ TKY
Sbjct: 858 IANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKY 917
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +RE+++ D RFH F DGACSCGDYW
Sbjct: 918 ISKIX----QRELLVRDANRFHVFKDGACSCGDYW 948
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 159/400 (39%), Gaps = 109/400 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD T T+ + C L + E+ +H ++ G ++G
Sbjct: 172 PD--TYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKAR 229
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELK 109
+FE+MP R+V SW S++ YN GY+ E + ++Y + GV +AC L
Sbjct: 230 KVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLG 289
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK--------------------------C 143
G ++ + I + + V +L M+ K C
Sbjct: 290 SVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMIC 349
Query: 144 GRMEMASGEFEEKDF---------------------SNLSLLKHGKEIHPHHLKKDDLES 182
G ++ E K F +L L+ GK +H + + E
Sbjct: 350 GYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS-GYEC 408
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D +N L++ YAKC L + FS +K K VSWN+M I + Q G
Sbjct: 409 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSM------------INVYIQNGS 456
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A++ F +M++TD++P++++ +L+ Q+ LGKE+H + +
Sbjct: 457 FDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK------------ 503
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
G + V N+L+DMY +CG + + + FE MK
Sbjct: 504 ----MGFNSNIVVSNTLVDMYAKCG--EMGDSLKVFENMK 537
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 71/277 (25%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P NV+ W S++ G + E ++L+ SE + R+ D Y + I
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLY------------SETQRIRLQPDTYTFPSVI- 181
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
NAC +LD EMA K IH L SDL
Sbjct: 182 ---NACA--GLLDF-------EMA------------------KSIHDRVLXMG-FGSDLY 210
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+D Y + L A F ++ + +VSWN++++GY G+ E
Sbjct: 211 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE------------ 258
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
ALE + R + P++ ++S VL AC + + G IHG + + I+ V L+S
Sbjct: 259 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 318
Query: 306 I----QGLGTGSFV-----------WNSLIDMYGRCG 327
+ GL G + WN++I Y + G
Sbjct: 319 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 355
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 187/695 (26%), Positives = 290/695 (41%), Gaps = 208/695 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------LCAFLGM---- 61
PD T++ L + C L ++E G +H + G++ C F G+
Sbjct: 214 PDSYTMSSVL--RACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGR 271
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKD 110
F+KM R+ SW +M+ Y+ +G YEE + LF ++++ + +AC L D
Sbjct: 272 RIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGD 331
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
GK V+DYMI+ +E + +++M+ KCG +
Sbjct: 332 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 391
Query: 147 EMASGEFEE--KDF---------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+ +G F+E K F + L L GKE+H L K S+
Sbjct: 392 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCD-LAKMGFNSN 450
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V+N+L+D YAKC + + F +K + +++WN ++A D
Sbjct: 451 IVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIAS------------CVHSEDC 498
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
L SRM + P+ ++ +L C+ + + GKEIHG + + ++ VG L
Sbjct: 499 NLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVL 558
Query: 304 ISIQ---GLGTGSF------------VWNSLIDMYGRCGAIQK----------------- 331
I + G SF W +LI G G +K
Sbjct: 559 IEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDH 618
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG YF MKK+Y +EP +E Y C+VDLL+R+ D +F+
Sbjct: 619 VAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFIL 678
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------------- 408
MP +P S+ C + +IAE + + EL P +G
Sbjct: 679 SMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQ 738
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KV+ F G ++++ L L + K GY
Sbjct: 739 VRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGY 798
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ KR CGHSE+LA+AFGL++T PG+PL+V+KNLR+C DCH+ TKY
Sbjct: 799 IANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKY 858
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +RE+++ D RFH F DGACSCGDYW
Sbjct: 859 ISKIV----QRELLVRDANRFHVFKDGACSCGDYW 889
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 71/277 (25%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P NV+ W S++ G + E ++L+ SE + R+ D Y + I
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLY------------SETQRIRLQPDTYTFPSVI- 122
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
NAC +LD EMA K IH L SDL
Sbjct: 123 ---NACA--GLLDF-------EMA------------------KSIHDRVLDMG-FGSDLY 151
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+D Y + L A F ++ + +VSWN++++GY G+ E
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE------------ 199
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
ALE + R + P++ ++S VL AC + + G IHG + + I+ V L+S
Sbjct: 200 ALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLS 259
Query: 306 I----QGLGTGSFV-----------WNSLIDMYGRCG 327
+ GL G + WN++I Y + G
Sbjct: 260 MYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVG 296
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 174/632 (27%), Positives = 255/632 (40%), Gaps = 192/632 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
YA + Q C ++ G Q+HA + + G + +F+++
Sbjct: 77 NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ N+F W ++ Y G YE V L+Y + D G+
Sbjct: 137 PKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGL------------------------ 172
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
V D F + F K + LS ++HG+EIH H+ + E D+
Sbjct: 173 ----------VPDNF---------TFPFVLKACAALSAIEHGREIH-EHVVQTGWEKDVF 212
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L+D YAKC + A F KI + V WN+MLA Y +Q G +
Sbjct: 213 VGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY------------SQNGHPDA 260
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
L S M+ T ++P +L ++A A G+E+HG R + V AL+
Sbjct: 261 CLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVD 320
Query: 306 I--------------QGLGTGSFV-WNSLIDMYGRCGAIQK------------------- 331
+ + LG V WN++I Y G +
Sbjct: 321 MYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITF 380
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EGW +FE M ++Y ++P ++ Y CMVDLL +G+ D+ N + +M
Sbjct: 381 VGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMK 440
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------------- 408
P S C N ++ E A L ELEP +G
Sbjct: 441 VLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAK 500
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
KVH+F++GDTSH L +I +L R+ +K+ GY
Sbjct: 501 LRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPS 560
Query: 446 IPA--------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ C HSE+LA+AFGLIST PG+ L + KNLR+C DCH K++SK
Sbjct: 561 TGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISK 620
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EREI + D R+HHF DG CSCGDYW
Sbjct: 621 IT----EREITVRDVNRYHHFKDGVCSCGDYW 648
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 187/708 (26%), Positives = 290/708 (40%), Gaps = 213/708 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M+ V + + + C LE G +VHA + G++ ++G
Sbjct: 293 LFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYT 352
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F + RNV SWT+M+ + G EE F +I+ G+
Sbjct: 353 KCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMS 412
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
ACS + G+ ++D +I + + V+ +L M+ KCG + A FE N
Sbjct: 413 ILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQN 472
Query: 161 L------------------------SLLKHGKEIHPHH---------------------- 174
+ +LLK G I P
Sbjct: 473 VVAWNAMITAYVQHEKYDNAVATFQALLKEG--IKPDSSTFTSILNVCKSPDALELGKWV 530
Query: 175 ---LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + ESDL + N+L+ + C L A F+ + ++ LVSWN ++AG
Sbjct: 531 QSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAG------- 583
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
F Q+G+ + A ++F M ++ ++P+ I+ +G+L ACA + G+ +H +
Sbjct: 584 -----FVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA 638
Query: 292 HIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGR---------- 325
+ VG LIS+ GS + W S+I Y +
Sbjct: 639 ALDCDVVVGTGLISMY-TKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALEL 697
Query: 326 ----------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GA+ EG +FE MK ++N+EP ME Y CMVDL
Sbjct: 698 FCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFG 756
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
RAG + + F+ KM +P S C + ++AE A+ EL+P
Sbjct: 757 RAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVI 816
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ G+VH F + D +H + +I +
Sbjct: 817 LSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAE 876
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L RL+ E+KK+GY+ K C HSE+LA+A+GL+ T P +P+ + KN
Sbjct: 877 LGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKN 936
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ TK +SK K R+II D+ RFHHF DG CSCGD+W
Sbjct: 937 LRVCGDCHTATKLISKITK----RQIIARDSNRFHHFKDGVCSCGDFW 980
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/418 (22%), Positives = 182/418 (43%), Gaps = 107/418 (25%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--- 59
+ L+L S+D + TY+ + Q C K NL G ++H H+ ++ F+
Sbjct: 85 LSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNM 144
Query: 60 ---------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+F++MP+++V+SW ++G Y YEE L ++ +GV
Sbjct: 145 LISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPD 204
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME------- 147
AC++ K+ G +++ +++ ++ + V +++M IKCG ++
Sbjct: 205 KYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFN 264
Query: 148 ------------MASGEFEEKDFSN--------------------LSLLK---------H 166
M +G + F +SLLK
Sbjct: 265 NLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQ 324
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H +K+ L++++ V +L+ Y KC ++ A F+ +K +++VSW AM+AG+A
Sbjct: 325 GKRVHAR-MKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q+G E A FF++MI++ ++PN ++ +L AC++ K G++IH
Sbjct: 384 ------------QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHD 431
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+++ G T V +L+ MY +CG++ + FE + K+
Sbjct: 432 RIIK----------------AGYITDDRVRTALLSMYAKCGSLM--DARNVFERISKQ 471
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 38/223 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+ IH +H+K ++ D+ + N L+ YAKC A F ++ K + SWN +L
Sbjct: 120 LGDGERIH-NHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLG 178
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY Q+ E A +M+Q ++P+ + +L ACA K G E
Sbjct: 179 GY------------VQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGE 226
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+ +L G T FV +LI+M+ +CG + ++ + F + +
Sbjct: 227 LFSLILN----------------AGWDTDLFVGTALINMHIKCGGV--DDALKVFNNLPR 268
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
+ + M+ LAR QF N + M E +P
Sbjct: 269 R-----DLITWTSMITGLARHRQFKQACNLFQVM--EEEGVQP 304
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 178/648 (27%), Positives = 263/648 (40%), Gaps = 193/648 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M + +T+A + C LELG Q+H + G++L LG
Sbjct: 519 LFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYI 578
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F + R+V SWT+M+G G + + LF+ + +EG
Sbjct: 579 RCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF--------- 629
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RPV F ++ +S +E +L G E+
Sbjct: 630 -----------------------RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL 666
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
D V N+L+ Y+K + A F K+ + +VSWN ++AGYA
Sbjct: 667 ------------DTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYA---- 710
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G G+TA+EF +M + D+ PN S +L AC+ + GK +H +++
Sbjct: 711 --------QNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK 762
Query: 291 HHIQLSTGVGIALISI------QGLGTGSF---------VWNSLIDMYGRCGAIQKN--- 332
+Q VG ALIS+ QG F WN++I+ Y + G K
Sbjct: 763 RKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGF 822
Query: 333 ------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
EG++ F M+ EY + P +E Y C+V LL
Sbjct: 823 FNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLG 882
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL---------- 402
RA +F + + +MPF P +A C N +AEHAA + +L
Sbjct: 883 RARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYIL 942
Query: 403 ----------------------------EPLSS-----GKVHSFIAGDTSHSLVHKISEK 429
EP S +H FIA D SH +I +
Sbjct: 943 LSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAE 1002
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L RL E+++ GY + C HSE+LA+A+GLI T PG+P+R+ KN
Sbjct: 1003 LKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKN 1062
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ +K++SK REII D+ RFH F +G CSC DYW
Sbjct: 1063 LRICGDCHTASKFISKLVG----REIIARDSNRFHSFKNGKCSCEDYW 1106
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 90/326 (27%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEK 64
TY I C LE G +H+H+ G + + A G +F
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYT 390
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
MP+R++ SW +++ Y E + L+ + EGV + G+ + +++S
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV----------KPGRVTFLHLLS- 439
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
AC +N S GK IH L+ ++S+
Sbjct: 440 -----AC---------------------------ANSSAYADGKMIHEDILR-SGIKSNG 466
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+ N+LM+ Y +C L A F + + ++SWN+M+AG+A Q+G E
Sbjct: 467 HLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA------------QHGSYE 514
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
TA + F M +++P+ I+ + VL+ C + +LGK+IHG + +QL +G
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG---- 570
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQ 330
N+LI+MY RCG++Q
Sbjct: 571 ------------NALINMYIRCGSLQ 584
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 153/386 (39%), Gaps = 111/386 (28%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEK 64
+TY I C LE G ++H+ +I G + L + G +F
Sbjct: 129 ITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAG 188
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------------YKACSELKDH 111
+ R+V S+ +M+G+Y Y +E + LF + EG+ + S L +
Sbjct: 189 ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE- 247
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---------- 158
GK ++ + + V ++ M ++CG ++ A F+ ++D
Sbjct: 248 --GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAAL 305
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
S L+ GK IH H + +D SD
Sbjct: 306 AQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH-ISEDGHSSD 364
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + N+L+ YA+C L A F + ++ L+SWNA++AGYA R E G
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA----RREDRG------- 413
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
A+ + +M ++P ++ +L+ACA + GK IH +LR
Sbjct: 414 -EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILR------------- 459
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAI 329
G+ + + N+L++MY RCG++
Sbjct: 460 ---SGIKSNGHLANALMNMYRRCGSL 482
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 142/385 (36%), Gaps = 105/385 (27%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
TY + Q C + L ++HA ++ V FL +F++
Sbjct: 28 ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
MP R+V SW S++ Y G+ ++ LF + + G + AC + G
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS------------------GEFEEK 156
K ++ +I ++ + V+ +L M+ KCG + A G + +K
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207
Query: 157 D------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
F+ S+L GK IH ++ + L SD+ V
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE-EGLNSDIRV 266
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+ +C + A F + +V +NA++A A Q+G A
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALA------------QHGHNVEA 314
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
E + RM + N + +L AC+ K + GK IH + IS
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH----------------ISE 358
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQK 331
G + + N+LI MY RCG + K
Sbjct: 359 DGHSSDVQIGNALISMYARCGDLPK 383
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 185/664 (27%), Positives = 278/664 (41%), Gaps = 221/664 (33%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM 61
L M+L+ PD TY+ + C +L L LG Q+H+ +I G+ L C+ + M
Sbjct: 43 LFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 100
Query: 62 ----------------FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLID------ 98
FE+MPE NV SWT+++ Y G + E + LF +I
Sbjct: 101 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 160
Query: 99 ----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
V KAC L D G+ VY Y + + CV ++ M+ + GRME A F+
Sbjct: 161 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 220
Query: 155 ---EKD------------------------------------FSNLSLLK---------H 166
EK+ F+ SLL
Sbjct: 221 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 280
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH L K +S+ + N+L+ Y++C ++ A F++++ ++++SW +M
Sbjct: 281 GEQIHGR-LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM----- 334
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
ITGF ++G ALE F +M++T +PN I+ VL+AC+
Sbjct: 335 -------ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH------------ 375
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+ +IS EG ++F M KE+
Sbjct: 376 --------------VGMIS---------------------------EGQKHFNSMYKEHG 394
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P ME Y CMVDLL R+G + + F+ MP + C N ++ HAA
Sbjct: 395 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 454
Query: 397 RHLFELEP-------------LSSG------------------------------KVHSF 413
+ E EP S+G +VH F
Sbjct: 455 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 514
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
G+TSH +I ++L +L S+IK++GY+ K HSEK+A+AF
Sbjct: 515 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAF 574
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLISTS P+R+ KNLR+CGDCH+ KY+S A REI++ D+ RFHH +G CSC
Sbjct: 575 GLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATG----REIVVRDSNRFHHIKNGVCSC 630
Query: 520 GDYW 523
DYW
Sbjct: 631 NDYW 634
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 91/332 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+KMPERN+ +WT M+ + LG + ++LF + G V AC+EL
Sbjct: 12 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR------------------------- 145
+GK ++ +I + + CV ++DM+ KC
Sbjct: 72 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131
Query: 146 ------------------MEMASGEFEEKDFSNLSLLK---------HGKEIHPHHLKKD 178
+M SG FS S+LK G++++ + +K
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL- 190
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ S V NSL+ YA+ ++ A F + +K+LVS+NA++ GYA EE
Sbjct: 191 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE----- 245
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A F+ + T + + + + +L+ A + G++IHG +L+
Sbjct: 246 -------AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK-------- 290
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G + + N+LI MY RCG I+
Sbjct: 291 --------GGYKSNQCICNALISMYSRCGNIE 314
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F K+ +++LV+W M IT F Q G A++ F M + P+ + S
Sbjct: 13 FDKMPERNLVTWTLM------------ITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 60
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
VL+AC ++ LGK++H V+R + L VG SL+DMY +C
Sbjct: 61 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGC----------------SLVDMYAKC 104
Query: 327 GAIQK-NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
A ++ + FE M + M + ++ A++G+ D
Sbjct: 105 AADGSVDDSRKVFEQMPEHNVM-----SWTAIITAYAQSGECD 142
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 188/697 (26%), Positives = 289/697 (41%), Gaps = 221/697 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C ++++ G ++HAH+I G E +G +F+KM
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKDHRVGK 115
P+R+ SW +M+ Y G E + LF ++ + V AC L + R+G+
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSN-----LSLLKH- 166
V+ Y++ +F G+ + ++ M+ GR+E A F E KD + SL+ H
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379
Query: 167 ---------------------------------------GKEIHPHHLKKDDLESDLLVN 187
G +H +K L S ++V+
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG-LVSHVIVS 438
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+D Y+KC+ + A F I K++VSW +++ G + E AL
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE------------AL 486
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------ 301
FF R ++ M+PN+++L VL+ACA++ GKEIH + LR TGVG
Sbjct: 487 LFF-RQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALR------TGVGFDGFLPN 539
Query: 302 --------------ALISIQGLGTGSFVWNSLIDMYGRCGAIQ----------------- 330
AL WN L+ Y + G +
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599
Query: 331 ----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG YF +MK +YN+ P ++ Y C+VD+L RAGQ DD +F+
Sbjct: 600 EITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
+ MP P +A C N ++ E AA+ +FE + S
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
GKVH+F++GD SHS +I+ L S++K+ G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779
Query: 442 YMKRIPA-------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + CGHSE+ A+AFGLI+T+PG P+ V KNL MC CH+ K+
Sbjct: 780 FGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKF 839
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGD--YW 523
+S + REI + D +HHF DG CSCGD YW
Sbjct: 840 ISTIVR----REISVRDVEEYHHFKDGVCSCGDEGYW 872
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 97/376 (25%)
Query: 18 PDECTVTYALIFQR----CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSW 73
PDE + Y L+ C +L N L + V G L A+ +F KM ER+VFSW
Sbjct: 113 PDEGSRVYELVSSSKSCLCVRLGNALLSMFVRF-----GNLLDAWY-VFGKMSERDVFSW 166
Query: 74 TSMMGMYNVLGYYEEIVNLFYLL----IDEGVY------KACSELKDHRVGKDVYDYMIS 123
++G Y G ++E +NL++ + I VY K C+ + D GK+++ ++I
Sbjct: 167 NVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR 226
Query: 124 IKFEGNACVKRPVLDMFIKCGRME-------------------MASGEFE---------- 154
FE + V ++ M++KCG + M SG FE
Sbjct: 227 FGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL 286
Query: 155 ---------EKDFSNLSLL----------KHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
+ D ++ + + G+ +H ++ K + D+ +NNSL+ Y+
Sbjct: 287 FSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG-YVVKSEFGGDISMNNSLIQMYS 345
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
L+ A FS+++ K +VSW AM+A + A+E + M
Sbjct: 346 SLGRLEEAETVFSRMESKDVVSWTAMIA------------SLVSHKLPFKAVETYKMMEL 393
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ P+ I+L VL+ACA + LG +H ++ GL + V
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIK----------------TGLVSHVIV 437
Query: 316 WNSLIDMYGRCGAIQK 331
NSLIDMY +C +
Sbjct: 438 SNSLIDMYSKCKCVDN 453
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+ + + L A F K+ ++ + SWN ++ GYA G +E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE------------ 181
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL + RM+ +++PN + VL CA V GKEIH +V+R + VG ALI+
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
+ + WN++I Y G EG F MM +E +++P
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG--GLEGLELFSMM-RELSVDPD 298
Query: 351 M 351
+
Sbjct: 299 L 299
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 187/698 (26%), Positives = 284/698 (40%), Gaps = 209/698 (29%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN TYA C +L L +HAH I+ G F+G
Sbjct: 105 TNLSPDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVY 161
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F+ MPER+ W +M+ +++ + LF ++ +GV A +E
Sbjct: 162 ARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAE 221
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------ 161
L++ +VG + + I F V ++ ++ KCG + A F + +L
Sbjct: 222 LQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAM 281
Query: 162 ------------------SLLKHGKEIH--------PHHLK---------------KDDL 180
LL G+ + P H K +
Sbjct: 282 ISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGI 341
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ V+ + Y K + +A F + +K +V+WNAM++GY TQ
Sbjct: 342 ILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGY------------TQN 389
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G ETA+ F M++T+ PN ++++ +L+ACAQ+ GK +H + +++ + V
Sbjct: 390 GSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVS 449
Query: 301 IALISIQG---------------LGTGSFVWNSLIDMYGRCG------------------ 327
AL+ + + WN++I YG G
Sbjct: 450 TALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYN 509
Query: 328 ---------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
A EG F M +Y +EP +E Y CMVD+L R+GQ + L
Sbjct: 510 PSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALE 569
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS---------------- 406
F+KKMP EP A C + DIA A+ LFEL+P S
Sbjct: 570 FIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERN 629
Query: 407 ---------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
+G H F++GD SHS I KL +L ++++
Sbjct: 630 FPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMRE 689
Query: 440 IGYM-KRIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+GY + +PA HSEKLA+AFGLI+T PG+ +R+IKNLR+C DCH+
Sbjct: 690 MGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTA 749
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 750 TKFISKIT----ERVIVVRDANRFHHFKDGICSCGDYW 783
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 188/697 (26%), Positives = 289/697 (41%), Gaps = 221/697 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C ++++ G ++HAH+I G E +G +F+KM
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKDHRVGK 115
P+R+ SW +M+ Y G E + LF ++ + V AC L + R+G+
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSN-----LSLLKH- 166
V+ Y++ +F G+ + ++ M+ GR+E A F E KD + SL+ H
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379
Query: 167 ---------------------------------------GKEIHPHHLKKDDLESDLLVN 187
G +H +K L S ++V+
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTG-LVSHVIVS 438
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+D Y+KC+ + A F I K++VSW +++ G + E AL
Sbjct: 439 NSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFE------------AL 486
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------ 301
FF R ++ M+PN+++L VL+ACA++ GKEIH + LR TGVG
Sbjct: 487 LFF-RQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALR------TGVGFDGFLPN 539
Query: 302 --------------ALISIQGLGTGSFVWNSLIDMYGRCGAIQ----------------- 330
AL WN L+ Y + G +
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPD 599
Query: 331 ----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG YF +MK +YN+ P ++ Y C+VD+L RAGQ DD +F+
Sbjct: 600 EITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI 659
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
+ MP P +A C N ++ E AA+ +FE + S
Sbjct: 660 QDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWD 719
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
GKVH+F++GD SHS +I+ L S++K+ G
Sbjct: 720 KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENG 779
Query: 442 YMKRIPA-------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + CGHSE+ A+AFGLI+T+PG P+ V KNL MC CH+ K+
Sbjct: 780 FGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKF 839
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGD--YW 523
+S + REI + D +HHF DG CSCGD YW
Sbjct: 840 ISTIVR----REISVRDVEEYHHFKDGVCSCGDEGYW 872
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 97/376 (25%)
Query: 18 PDECTVTYALIFQR----CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSW 73
PDE + Y L+ C +L N L + V G L A+ +F KM ER+VFSW
Sbjct: 113 PDEGSRVYELVSSSKSCLCVRLGNALLSMFVRF-----GNLLDAWY-VFGKMSERDVFSW 166
Query: 74 TSMMGMYNVLGYYEEIVNLFYLL----IDEGVY------KACSELKDHRVGKDVYDYMIS 123
++G Y G ++E +NL++ + I VY K C+ + D GK+++ ++I
Sbjct: 167 NVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIR 226
Query: 124 IKFEGNACVKRPVLDMFIKCGRME-------------------MASGEFE---------- 154
FE + V ++ M++KCG + M SG FE
Sbjct: 227 FGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLEL 286
Query: 155 ---------EKDFSNLSLL----------KHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
+ D ++ + + G+ +H ++ K + D+ +NNSL+ Y+
Sbjct: 287 FSMMRELSVDPDLITMTTVASACELLDNERLGRGVHG-YVVKSEFGGDISMNNSLIQMYS 345
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
L+ A FS+++ K +VSW AM+A + A+E + M
Sbjct: 346 SLGRLEEAETVFSRMESKDVVSWTAMIA------------SLVSHKLPFKAVETYKMMEL 393
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ P+ I+L VL+ACA + LG +H ++ GL + V
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIK----------------TGLVSHVIV 437
Query: 316 WNSLIDMYGRCGAIQK 331
NSLIDMY +C +
Sbjct: 438 SNSLIDMYSKCKCVDN 453
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+ + + L A F K+ ++ + SWN ++ GYA G +E
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDE------------ 181
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL + RM+ +++PN + VL CA V GKEIH +V+R + VG ALI+
Sbjct: 182 ALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALIT 241
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
+ + WN++I Y G EG F MM +E +++P
Sbjct: 242 MYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGG--GLEGLELFSMM-RELSVDPD 298
Query: 351 M 351
+
Sbjct: 299 L 299
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 185/664 (27%), Positives = 278/664 (41%), Gaps = 221/664 (33%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM 61
L M+L+ PD TY+ + C +L L LG Q+H+ +I G+ L C+ + M
Sbjct: 38 LFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 95
Query: 62 ----------------FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLID------ 98
FE+MPE NV SWT+++ Y G + E + LF +I
Sbjct: 96 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPN 155
Query: 99 ----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
V KAC L D G+ VY Y + + CV ++ M+ + GRME A F+
Sbjct: 156 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 215
Query: 155 ---EKD------------------------------------FSNLSLLK---------H 166
EK+ F+ SLL
Sbjct: 216 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 275
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH L K +S+ + N+L+ Y++C ++ A F++++ ++++SW +M
Sbjct: 276 GEQIHGR-LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM----- 329
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
ITGF ++G ALE F +M++T +PN I+ VL+AC+
Sbjct: 330 -------ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH------------ 370
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+ +IS EG ++F M KE+
Sbjct: 371 --------------VGMIS---------------------------EGQKHFNSMYKEHG 389
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P ME Y CMVDLL R+G + + F+ MP + C N ++ HAA
Sbjct: 390 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 449
Query: 397 RHLFELEP-------------LSSG------------------------------KVHSF 413
+ E EP S+G +VH F
Sbjct: 450 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 509
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
G+TSH +I ++L +L S+IK++GY+ K HSEK+A+AF
Sbjct: 510 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAF 569
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLISTS P+R+ KNLR+CGDCH+ KY+S A REI++ D+ RFHH +G CSC
Sbjct: 570 GLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATG----REIVVRDSNRFHHIKNGVCSC 625
Query: 520 GDYW 523
DYW
Sbjct: 626 NDYW 629
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 91/332 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+KMPERN+ +WT M+ + LG + ++LF + G V AC+EL
Sbjct: 7 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR------------------------- 145
+GK ++ +I + + CV ++DM+ KC
Sbjct: 67 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126
Query: 146 ------------------MEMASGEFEEKDFSNLSLLK---------HGKEIHPHHLKKD 178
+M SG FS S+LK G++++ + +K
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKL- 185
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ S V NSL+ YA+ ++ A F + +K+LVS+NA++ GYA EE
Sbjct: 186 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE----- 240
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A F+ + T + + + + +L+ A + G++IHG +L+
Sbjct: 241 -------AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLK-------- 285
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G + + N+LI MY RCG I+
Sbjct: 286 --------GGYKSNQCICNALISMYSRCGNIE 309
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F K+ +++LV+W M IT F Q G A++ F M + P+ + S
Sbjct: 8 FDKMPERNLVTWTLM------------ITRFAQLGCARDAIDLFLDMELSGYVPDRFTYS 55
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
VL+AC ++ LGK++H V+R + L VG SL+DMY +C
Sbjct: 56 SVLSACTELGLLALGKQLHSRVIRLGLALDVCVGC----------------SLVDMYAKC 99
Query: 327 GAIQK-NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
A ++ + FE M + M + ++ A++G+ D
Sbjct: 100 AADGSVDDSRKVFEQMPEHNVM-----SWTAIITAYAQSGECD 137
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 185/664 (27%), Positives = 278/664 (41%), Gaps = 221/664 (33%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM 61
L M+L+ PD TY+ + C +L L LG Q+H+ +I G+ L C+ + M
Sbjct: 218 LFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 275
Query: 62 ----------------FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLID------ 98
FE+MPE NV SWT+++ Y G + E + LF +I
Sbjct: 276 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 335
Query: 99 ----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
V KAC L D G+ VY Y + + CV ++ M+ + GRME A F+
Sbjct: 336 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 395
Query: 155 ---EKD------------------------------------FSNLSLLK---------H 166
EK+ F+ SLL
Sbjct: 396 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 455
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH L K +S+ + N+L+ Y++C ++ A F++++ ++++SW +M
Sbjct: 456 GEQIHGR-LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM----- 509
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
ITGF ++G ALE F +M++T +PN I+ VL+AC+
Sbjct: 510 -------ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH------------ 550
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+ +IS EG ++F M KE+
Sbjct: 551 --------------VGMIS---------------------------EGQKHFNSMYKEHG 569
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P ME Y CMVDLL R+G + + F+ MP + C N ++ HAA
Sbjct: 570 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 629
Query: 397 RHLFELEP-------------LSSG------------------------------KVHSF 413
+ E EP S+G +VH F
Sbjct: 630 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 689
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
G+TSH +I ++L +L S+IK++GY+ K HSEK+A+AF
Sbjct: 690 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAF 749
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLISTS P+R+ KNLR+CGDCH+ KY+S A REI++ D+ RFHH +G CSC
Sbjct: 750 GLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATG----REIVVRDSNRFHHIKNGVCSC 805
Query: 520 GDYW 523
DYW
Sbjct: 806 NDYW 809
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 121/440 (27%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------ 60
TL L + PD TY+++ + C + N +LG VH L+ G+EL + +
Sbjct: 13 TLDLMTQQNAPPD--LTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 70
Query: 61 ------------MFEKM-PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----- 102
+FE M +R++ SW++M+ + + + F +++ G Y
Sbjct: 71 YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYC 130
Query: 103 -----KACSELKDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIK-------------- 142
+ACS VG+ +Y +++ + E + CV ++DMF+K
Sbjct: 131 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 190
Query: 143 --------------------CGR--------MEMASGEFEEKDFSN-------LSLLKHG 167
C R ME++ + +S+ L LL G
Sbjct: 191 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 250
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY---LKVAHCKFSKIKQKHLVSWNAMLAG 224
K++H ++ L D+ V SL+D YAKC + + F ++ + +++SW A+
Sbjct: 251 KQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI--- 306
Query: 225 YALGGFREEITGFTQYGD-GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
IT + Q G+ + A+E F +MI ++PN S S VL AC + G++
Sbjct: 307 ---------ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 357
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
++ Y ++ +GIA ++ G NSLI MY R G ++ + + F+++
Sbjct: 358 VYSYAVK--------LGIASVNCVG--------NSLISMYARSGRME--DARKAFDIL-- 397
Query: 344 EYNMEPAMEQYCCMVDLLAR 363
E + Y +VD A+
Sbjct: 398 ---FEKNLVSYNAIVDGYAK 414
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 180/707 (25%), Positives = 300/707 (42%), Gaps = 213/707 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L++S +L D C+ T+AL + C + E+G+++ + + G+E F+G
Sbjct: 120 LMRSRNL-EVDSCSCTFAL--KACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLV 176
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ MP ++V W S++G Y G ++ LF+ + G+
Sbjct: 177 KFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTS 236
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----------- 149
+AC + + ++GK ++ Y++ + + V +DM+ K G +E A
Sbjct: 237 LIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRN 296
Query: 150 ------------------------------SGEFEEKDFSNL-------SLLKHGKEIHP 172
SG F+ +L + L GK +H
Sbjct: 297 LVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHG 356
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
++ ES+L+++ +++D Y+KC LK A F+++K +++++W AML G A
Sbjct: 357 CAIR--SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLA------ 408
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q G E AL F++M + + N+++ ++ +CA + K G+ IHG++ R
Sbjct: 409 ------QNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG 462
Query: 293 IQLSTGVGIALISIQG----------------LGTGSFVWNSLIDMYGRCG--------- 327
AL+ + + +WNS+I YG G
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522
Query: 328 ------AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
++ N+ G F M++++N+ P + Y C+VDLL+R
Sbjct: 523 HKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSR 582
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK---- 409
AG+F++ ++KMPF+P +A C N ++ + L L+ ++ G
Sbjct: 583 AGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIML 642
Query: 410 ---------------------------------------VHSFIAGDTSHSLVHKISEKL 430
VH+F AGD SH +I L
Sbjct: 643 SNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFL 702
Query: 431 MRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
L S ++ GY MK GHSE+LA+AFGL++T GS +R+ KNL
Sbjct: 703 ESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNL 762
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH+ TKY+SK K REII+ D RFHHF +G CSCGDYW
Sbjct: 763 RVCGDCHTVTKYISKIVK----REIIVRDANRFHHFSNGECSCGDYW 805
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ L +D V L+ Y+ R L+ A F + Q + NAML GY
Sbjct: 58 NSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGY------------ 105
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G LE F M +++ ++ S + L ACA +++G EI + ++ +
Sbjct: 106 LQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNR 165
Query: 298 GVGIALIS--------------IQGLGTGSFV-WNSLIDMYGRCG 327
VG ++IS G+ V WNS+I Y + G
Sbjct: 166 FVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAG 210
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 185/664 (27%), Positives = 278/664 (41%), Gaps = 221/664 (33%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM 61
L M+L+ PD TY+ + C +L L LG Q+H+ +I G+ L C+ + M
Sbjct: 236 LFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 293
Query: 62 ----------------FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLID------ 98
FE+MPE NV SWT+++ Y G + E + LF +I
Sbjct: 294 YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPN 353
Query: 99 ----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
V KAC L D G+ VY Y + + CV ++ M+ + GRME A F+
Sbjct: 354 HFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFD 413
Query: 155 ---EKD------------------------------------FSNLSLLK---------H 166
EK+ F+ SLL
Sbjct: 414 ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGK 473
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH L K +S+ + N+L+ Y++C ++ A F++++ ++++SW +M
Sbjct: 474 GEQIHGR-LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSM----- 527
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
ITGF ++G ALE F +M++T +PN I+ VL+AC+
Sbjct: 528 -------ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH------------ 568
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+ +IS EG ++F M KE+
Sbjct: 569 --------------VGMIS---------------------------EGQKHFNSMYKEHG 587
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P ME Y CMVDLL R+G + + F+ MP + C N ++ HAA
Sbjct: 588 IVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAA 647
Query: 397 RHLFELEP-------------LSSG------------------------------KVHSF 413
+ E EP S+G +VH F
Sbjct: 648 EMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRF 707
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
G+TSH +I ++L +L S+IK++GY+ K HSEK+A+AF
Sbjct: 708 HVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAF 767
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLISTS P+R+ KNLR+CGDCH+ KY+S A REI++ D+ RFHH +G CSC
Sbjct: 768 GLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATG----REIVVRDSNRFHHIKNGVCSC 823
Query: 520 GDYW 523
DYW
Sbjct: 824 NDYW 827
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 121/440 (27%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------ 60
TL L + PD TY+++ + C + N +LG VH L+ G+EL + +
Sbjct: 31 TLDLMTQQNAPPD--LTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 88
Query: 61 ------------MFEKM-PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----- 102
+FE M +R++ SW++M+ + + + F +++ G Y
Sbjct: 89 YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYC 148
Query: 103 -----KACSELKDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIK-------------- 142
+ACS VG+ +Y +++ + E + CV ++DMF+K
Sbjct: 149 FAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDK 208
Query: 143 --------------------CGR--------MEMASGEFEEKDFSN-------LSLLKHG 167
C R ME++ + +S+ L LL G
Sbjct: 209 MPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALG 268
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY---LKVAHCKFSKIKQKHLVSWNAMLAG 224
K++H ++ L D+ V SL+D YAKC + + F ++ + +++SW A+
Sbjct: 269 KQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI--- 324
Query: 225 YALGGFREEITGFTQYGD-GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
IT + Q G+ + A+E F +MI ++PN S S VL AC + G++
Sbjct: 325 ---------ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
++ Y ++ +GIA ++ G NSLI MY R G ++ + + F+++
Sbjct: 376 VYSYAVK--------LGIASVNCVG--------NSLISMYARSGRME--DARKAFDIL-- 415
Query: 344 EYNMEPAMEQYCCMVDLLAR 363
E + Y +VD A+
Sbjct: 416 ---FEKNLVSYNAIVDGYAK 432
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 180/667 (26%), Positives = 280/667 (41%), Gaps = 177/667 (26%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLGM 61
K V LLQ + T ++ +ALI + NN L ++ L C +L +
Sbjct: 4 KKVMSLLQ--NATKLNQIIQIHALIIKTSLDGNNFVLA-KLLRRLFACSSANDLLYARSV 60
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL-------IDEG----VYKACSELKD 110
F+++P + F W +M+ Y +E ++LF+ + ID V +AC LKD
Sbjct: 61 FDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKD 120
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
G+ ++ ++ I + V+ +++M+ K G +E+A +E
Sbjct: 121 PGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEM-------------A 167
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA---- 226
HP DL+ N L+ Y + + +AH F ++ ++ LVSWN M+ G+A
Sbjct: 168 HP----------DLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGD 217
Query: 227 ---------------LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
L + I + + AL F M ++ P+ +++ VL+A
Sbjct: 218 VGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSA 277
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGS-FVW 316
C V +GK IH + R+ I++ +G +L+ + G+ F W
Sbjct: 278 CGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAW 337
Query: 317 NSLI-------------DMYGR-------------------CGAIQ-KNEGWRYFEMMKK 343
+++I D + + C I +EGW YF M K
Sbjct: 338 SAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSK 397
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAE 393
Y++ P +E Y C+VD+L RAG+ + + +K MPF P + C N +IAE
Sbjct: 398 VYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAE 457
Query: 394 HAARHLFELEPLSSGK-------------------------------------------V 410
A +L ELEP G V
Sbjct: 458 EATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAV 517
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F+AGD SH KI L + + +K GY K HSEKLA
Sbjct: 518 HEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLA 577
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ST+PGS +R++KNLR+C DCH K +S+ K R II+ D RFHHFV+G+
Sbjct: 578 IAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYK----RRIIVRDRNRFHHFVNGS 633
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 634 CSCKDYW 640
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 185/713 (25%), Positives = 293/713 (41%), Gaps = 215/713 (30%)
Query: 8 LLLQSMDLTNPDECTV------TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------ 55
+ LQ++DL + V T + Q C +L L LG ++HA L+ G E+
Sbjct: 246 MFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNA 305
Query: 56 -------C----AFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---- 100
C + L +F ++ E++ SW SM+ Y G Y E + ++ G
Sbjct: 306 LLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPD 365
Query: 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+ A L GK+V+ Y I + + + V ++DM++KC +E ++ F+
Sbjct: 366 HACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFD 425
Query: 155 E---KDF---------------------------------------------SNLSLLKH 166
KD S L +
Sbjct: 426 RMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILL 485
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
K++H + ++ L DL+V N ++D Y +C + + F ++QK +V+W +M+ YA
Sbjct: 486 AKQLHCYAIRNGLL--DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYA 543
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G E AL F+ M TD+QP++++L +L A + GKE+HG
Sbjct: 544 NSGLLNE------------ALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHG 591
Query: 287 YVLRHHIQLSTGVGIALISI-QGLGTGS--------------FVWNSLIDMYGRCGAIQK 331
+++R + + + +L+ + G G+ S +W ++I+ G G ++
Sbjct: 592 FLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQ 651
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
NEG Y +MM Y +EP E Y C+V
Sbjct: 652 AIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVV 711
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG 408
DLL R+GQ ++ F+K MP +P S C N ++A AA L ELEP + G
Sbjct: 712 DLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPG 771
Query: 409 K-------------------------------------------VHSFIAGDTSHSLVHK 425
VH+F D SH +
Sbjct: 772 NYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAER 831
Query: 426 ISEKLMRLYSEIKKIG-YMKRIPAC--------------GHSEKLALAFGLISTSPGSPL 470
I+ KL + ++K G Y + + HSE+LA++FGLI+T PG PL
Sbjct: 832 INLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGMPL 891
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+ KNLR+CGDCH TK VSK +R+I++ D RFHHF G+CSCGD+W
Sbjct: 892 RIAKNLRVCGDCHEFTKLVSKL----FDRDIVVRDANRFHHFSGGSCSCGDFW 940
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 114/373 (30%)
Query: 41 GIQVHAHLIVCG----------VELCAFLG----------MFEKMPERNVFSWTSMMGMY 80
G+QVHAH + G +L G +F+ M R VFSW +++G Y
Sbjct: 77 GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136
Query: 81 NVLGYYEEIVNLFYLL-------------IDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
G E + ++ + V KA D R G +V+ + +
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLD 196
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFE----EKDFSN----------------------- 160
+ V ++ M+ KCG ++ A FE +D ++
Sbjct: 197 RSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRG 256
Query: 161 ----------------------LSLLKHGKEIHPHHLKKDDLESDLLVN-NSLMDFYAKC 197
L+ L G+E+H LK S++ + N+L+ Y KC
Sbjct: 257 MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG---SEVNIQCNALLVMYTKC 313
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ A F +I +K +SWN+ML+ Y G E A+EF S M++
Sbjct: 314 GRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAE------------AIEFISEMLRGG 361
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317
QP+ + + +A + GKE+H Y ++ + T VG N
Sbjct: 362 FQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVG----------------N 405
Query: 318 SLIDMYGRCGAIQ 330
+L+DMY +C I+
Sbjct: 406 TLMDMYMKCRYIE 418
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 32/215 (14%)
Query: 164 LKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+ G ++H H + LE D + L+ Y KC + A F + + + SWNA++
Sbjct: 74 VAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALI 133
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
Y G E G + A+ + + + P+ +L+ VL A + G
Sbjct: 134 GAYLSSGSACEALGVYR------AMRLSA---ASGVAPDGCTLASVLKASGVEGDGRCGC 184
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
E+HG ++H GL +FV N+LI MY +CG + + R FE+M
Sbjct: 185 EVHGLAVKH----------------GLDRSTFVANALIAMYAKCGIL--DSAMRVFELMH 226
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + + M+ + G F L+ + M
Sbjct: 227 DGRD----VASWNSMISGCLQNGMFLQALDLFRGM 257
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 185/641 (28%), Positives = 277/641 (43%), Gaps = 191/641 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+ T+ + C + N+L G+ VH L+ G + FL
Sbjct: 74 PNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRAR 133
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++ ER ++ W ++ ++G +E+++L+ + G+ D +
Sbjct: 134 KVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGI------------PSDRFT 181
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
Y +K ACV + ++S L+ GKEIH H L+
Sbjct: 182 YTFVLK----ACVVSEL-----------------------SVSPLQKGKEIHAHILRHG- 213
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E+++ V +L+D YAK + A+ F + K+ VSW+AM+A +A + E+
Sbjct: 214 YEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFA----KNEMP---- 265
Query: 240 YGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
ALE F M+ D PN++++ VL ACA + + GK IHGY+LR +
Sbjct: 266 ----MKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSIL 321
Query: 298 GVGIALISIQG------LGTGSF---------VWNSLIDMYGRCG----AIQ-------- 330
V ALI++ G +G F WNSLI +YG G AIQ
Sbjct: 322 PVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381
Query: 331 ---------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
EG FE M +Y + P ME Y CMVDLL RA + D+
Sbjct: 382 GSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDE 441
Query: 370 TLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLSSG----------- 408
+ ++ M FEP S CN ++AE A+ LFELEP ++G
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVLLADIYAE 501
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
KV+SF++ D + + +I L++L +E
Sbjct: 502 AKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNE 561
Query: 437 IKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+K GY+ + GHSEKLA+AFGLI+T G +R+ KNLR+C DC
Sbjct: 562 MKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKNLRLCEDC 621
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ TK++SK REI++ D RFHHF DG CSCGDYW
Sbjct: 622 HAVTKFISKFAN----REILVRDVNRFHHFKDGVCSCGDYW 658
>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 852
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 174/672 (25%), Positives = 286/672 (42%), Gaps = 175/672 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGMFE 63
L + M L T I + C L ++ G +H +++ G E + + M+
Sbjct: 199 LFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYA 258
Query: 64 K---------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------- 101
K + N WT+M+ Y G + + F + EGV
Sbjct: 259 KCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTF 318
Query: 102 ---YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
ACS + H G+ V+ ++ F NA V+ ++DM+ KCG + A E +
Sbjct: 319 PSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMED 378
Query: 159 SN--------LSLLKHG---------KEIHPHHLK------------------------- 176
+ + ++HG K++H ++K
Sbjct: 379 DDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRIDGKSVHC 438
Query: 177 ---KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
K E+ LV+N+L+D YAK L A+ F K+ +K ++SW ++
Sbjct: 439 LVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSL------------ 486
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+TG+TQ G E +L+ F M + + P+ ++ +L+ACA++ + GK++H ++ +
Sbjct: 487 VTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGL 546
Query: 294 QLSTGVGIALISIQGL------GTGSFV---------WNSLIDMYGRCGAIQKNEGWRYF 338
+ S V +L+++ FV W +LI Y R G + + +YF
Sbjct: 547 RSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNG--KGRDSLKYF 604
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
+ MKK Y +EP E Y CM+DL R G+ D+ + +M +P + C N
Sbjct: 605 QQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGN 664
Query: 389 PDIAEHAARHLFELEPLSS----------------------------------------- 407
++ E AA +LFELEP+++
Sbjct: 665 LELGERAATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIE 724
Query: 408 --GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGH 451
++H+FI+ D H +I K+ + IK++GY+ K H
Sbjct: 725 MNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVGYVPDMNFSLHDMDREGKEAGLAYH 784
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFGL+++ PG+P+R+ KNLR+CGDCHS KY+S R II+ D+ FHH
Sbjct: 785 SEKLAVAFGLLASPPGAPIRIFKNLRVCGDCHSAMKYISGV----FTRHIILRDSNCFHH 840
Query: 512 FVDGACSCGDYW 523
F +G CSC DYW
Sbjct: 841 FKEGECSCEDYW 852
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 124/275 (45%), Gaps = 51/275 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGK--DV 117
+F+KM +R+ ++W +M+ Y +G E LF S + + R G+ +
Sbjct: 137 LFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSSITWSSLISGYCRFGRQAEA 196
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+D ++ EG + + + C S L L++ G+ IH + + K
Sbjct: 197 FDLFKRMRLEGQKPSQYTLGSILRGC---------------SALGLIQKGEMIHGY-VVK 240
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI---KQKHLVSWNAMLAGYALGGFREEI 234
+ ES++ V L+D YAKCR++ A F + K H++ W AM+ GYA
Sbjct: 241 NGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVL-WTAMVTGYA-------- 291
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q GD A+EFF M ++ N + +L AC+ V G+++HG ++R+
Sbjct: 292 ----QNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRN--- 344
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
G G ++V ++L+DMY +CG +
Sbjct: 345 -------------GFGCNAYVQSALVDMYAKCGDL 366
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 35/166 (21%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-----------LGGFREE-- 233
+N L++ +K + A F K+ Q+ +WN M++GYA GF
Sbjct: 118 SNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFSSRSS 177
Query: 234 ------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+G+ ++G A + F RM +P+ +L +L C+ + + G+ IHGY
Sbjct: 178 ITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEMIHGY 237
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
V+++ G + +V L+DMY +C I + E
Sbjct: 238 VVKN----------------GFESNVYVVAGLVDMYAKCRHISEAE 267
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 183/670 (27%), Positives = 278/670 (41%), Gaps = 187/670 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD + A+ + C L L+ G Q+HA G + +
Sbjct: 102 PDAFLLPSAI--KSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDAR 159
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++MP+R+V W++M+ Y+ LG EE LF E++ V ++
Sbjct: 160 KLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELF------------GEMRSGGVEPNLVS 207
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL--------LKHGKEIH 171
+ + GN + MF RM + G + + + L + G ++H
Sbjct: 208 WNGMLAGFGNNGFYDEAVGMF----RMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVH 263
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-- 229
+ +K+ L SD V ++++D Y KC +K F ++++ + S NA L G + G
Sbjct: 264 GYVIKQG-LGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMV 322
Query: 230 ---------FREE------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
F+++ I +Q G ALE F M ++PN +++ +
Sbjct: 323 DTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSL 382
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF-------- 314
+ AC + GKEIH + LR I VG ALI + L F
Sbjct: 383 IPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNL 442
Query: 315 -VWNSLIDMYGRCGAIQKN---------------------------------EGWRYFEM 340
WN+++ Y G ++ EGWR +
Sbjct: 443 VSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNS 502
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPD 390
M +E+ +EP ME Y C+V LL+R G+ ++ + +K+MPFEP + C N
Sbjct: 503 MSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLS 562
Query: 391 IAEHAARHLFELEPLSSG------------------------------------------ 408
+ E AA LF LEP + G
Sbjct: 563 LGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVG 622
Query: 409 -KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSE 453
KVH +AGD SH + I EKL +L ++KK GY+ + CGHSE
Sbjct: 623 HKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSE 682
Query: 454 KLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513
KLA+ GL++TSPG PL+VIKNLR+C DCH+ K +S+ E REI + D RFHHF
Sbjct: 683 KLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEG----REIYVRDTNRFHHFK 738
Query: 514 DGACSCGDYW 523
DG CSCGD+W
Sbjct: 739 DGVCSCGDFW 748
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 181/655 (27%), Positives = 272/655 (41%), Gaps = 225/655 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV--------------ELCAFLG----MFEKM 65
T+ + C L +L G Q+H V G C +L +F+++
Sbjct: 88 TFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEI 147
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF--YLLIDEGVY-------------------KA 104
PERNV SWTSM+ Y E V LF +LL+DE Y A
Sbjct: 148 PERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISA 207
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKD---- 157
C+ + V + V+ + FEG V ++D + KCG + ++ F EE D
Sbjct: 208 CARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSW 267
Query: 158 -------------------FSNL-----------------------SLLKHGKEIHPHHL 175
FS++ L+ GK IH +
Sbjct: 268 NSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVV 327
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K + LE +L+V S++D Y KC +++A F ++K+K++ SW M+AGY +
Sbjct: 328 KME-LEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGM-------- 378
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
+G G+ A++ F MI+ ++PN I+ VLAAC+ H +L+
Sbjct: 379 ----HGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACS-----------HAGLLK----- 418
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355
EGW +F MK E+++EP +E Y
Sbjct: 419 -------------------------------------EGWHWFNKMKCEFDVEPGIEHYS 441
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG + +++M +P S C N ++ E +AR LF+L+P
Sbjct: 442 CMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPS 501
Query: 406 S-------------------------------------------SGKVHSFIAGDTSHSL 422
+ G+VH F+ GD H
Sbjct: 502 NCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQ 561
Query: 423 VHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGS 468
KI E L L +++++GYM + + HSEKLA+AFG++++ PGS
Sbjct: 562 HEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGS 621
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+++IKNLR+CGDCH K +SK REI++ D+ RFHHF DG CSCGDYW
Sbjct: 622 VIQIIKNLRICGDCHFAIKLISKIV----NREIVIRDSKRFHHFKDGLCSCGDYW 672
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 30/130 (23%)
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ + + SWN+++A +A + GD AL FS M + + PN + +
Sbjct: 46 VDKTSVYSWNSIIADFA------------RSGDSLQALYAFSSMRKLSLHPNRSTFPCTI 93
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+C+ + GK+IH + G G+ FV ++LIDMY +CG +
Sbjct: 94 KSCSSLYDLCAGKQIHQQAF----------------VFGYGSDIFVASALIDMYSKCGYL 137
Query: 330 QKNEGWRYFE 339
N+ + F+
Sbjct: 138 --NDARKLFD 145
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 173/675 (25%), Positives = 281/675 (41%), Gaps = 213/675 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G++ FL +F+ +P +F W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 85 YYEEIV------NLFYLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++++ + L + D + KACS L ++G+ V+ + + F+ + V+
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KC R+ A FE
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDV 218
Query: 156 -----------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVA 203
F+ L LK G+ IH +K ++E DLL+ SL YAKC + A
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATA 276
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K+K +L+ WNAM++GYA G+ E A++ F MI D++P+TI
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYARE------------AIDMFHEMINKDVRPDTI 324
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQG-------- 308
S++ ++ACAQV + + ++ YV R + + ALI S++G
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 309 LGTGSFVWNSLIDMYG---------------RCGAIQKN------------------EGW 335
L VW+++I YG G + N EGW
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW 444
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP 389
+F +M ++ + P + Y C++DLL RAG D +K MP +P C
Sbjct: 445 WFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503
Query: 390 ----DIAEHAARHLFELEPLSSG------------------------------------- 408
++ E+AA+ LF ++P ++G
Sbjct: 504 HRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-------------- 448
++ +F GD SH +I ++ + S +K+ G++ A
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
C HSE++A+A+GLIST G+PLR+ KNLR C +CH+ TK +SK +REI++ D R
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLV----DREIVVRDTNR 679
Query: 509 FHHFVDGACSCGDYW 523
FHHF DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 170/587 (28%), Positives = 250/587 (42%), Gaps = 175/587 (29%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG ++ A +F+ MP +N SW +M+ Y G E + LF +++EGV
Sbjct: 209 CG-DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV--------- 258
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
DV D VL CG L L G +
Sbjct: 259 -----DVTDV--------------SVLAALQACG---------------ELGCLDEGMRV 284
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L + L+S++ V N+L+ Y+KC+ + +A F ++ ++ VSWNAM+ G A
Sbjct: 285 H-ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCA---- 339
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G E A+ F+RM +++P++ +L V+ A A + + IHGY +R
Sbjct: 340 --------QNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR 391
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG----AIQ- 330
H+ V ALI + WN++I YG G A++
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVEL 451
Query: 331 ----------------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+EG YF MK++Y +EP ME Y MVDLL
Sbjct: 452 FEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLG 511
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----- 407
RAG+ D+ F++KMP +P + C N ++AE +A+ +FEL P
Sbjct: 512 RAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVL 571
Query: 408 --------------------------------------GKVHSFIAGDTSHSLVHKISEK 429
++H+F +G T+H +I +
Sbjct: 572 LANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSR 631
Query: 430 LMRLYSEIKKIGYMKRIPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
L +L EIK +GY+ + HSEKLA+AFGLI T+PG+ +++ KNL
Sbjct: 632 LAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNL 691
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH+ TK +S REIIM D RFHHF DG CSCGDYW
Sbjct: 692 RVCNDCHNATKLISLVTG----REIIMRDIQRFHHFKDGKCSCGDYW 734
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ LE + V +++D Y KC ++ A F + K+ VSWNAM+ GYA
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA---------- 238
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q GD AL F+RM++ + +S+ L AC ++ G +H ++R
Sbjct: 239 --QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR------ 290
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
GL + V N+LI MY +C
Sbjct: 291 ----------IGLDSNVSVMNALITMYSKC 310
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 42/226 (18%)
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
PVL F ++ A G+ L G+ +H L ++S+ L +L + Y
Sbjct: 57 PVLRTFTSLLKLCAARGD-----------LATGRAVHAQ-LAARGIDSEALAATALANMY 104
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
AKCR A F ++ + V+WNA++AGYA G A+E RM
Sbjct: 105 AKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGL------------ARMAMEMVVRMQ 152
Query: 255 QTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SI 306
+ + + P++I+L VL ACA + +E H + +R ++ V A++ I
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212
Query: 307 QGLGT--------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+ S WN++ID Y + G E F M +E
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNG--DSREALALFNRMVEE 256
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 171/651 (26%), Positives = 275/651 (42%), Gaps = 197/651 (30%)
Query: 8 LLLQSM--DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----- 60
LL + M + PDE T+ I + C +L L G Q+HA ++ CG F+
Sbjct: 110 LLFKEMHENSVQPDE--FTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIH 167
Query: 61 -------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107
+F++M ERNV +W SM Y G +EE+V LF+ +++
Sbjct: 168 MYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLE--------- 218
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
+ I+F+ + ++ + CGR L+ L+ G
Sbjct: 219 --------------LDIRFD-----EVTLVSVLTACGR---------------LADLELG 244
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ I+ ++++ L+ + + SL+D YAKC + A F ++ ++ +V+W+AM++GY
Sbjct: 245 EWIN-RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY-- 301
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
+Q AL+ F M + ++ PN I++ +L++CA + + GK +H +
Sbjct: 302 ----------SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFF 351
Query: 288 VLRHHIQLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMYGRCGAIQK- 331
+ + ++L+ +G AL+ SI+ G W LI G +K
Sbjct: 352 IKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKA 411
Query: 332 --------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
+EG F M +++ +EP +E Y CMVD
Sbjct: 412 LEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVD 471
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK 409
+L RAG ++ F+K MP +P++ C N +I E + + L LEP SG
Sbjct: 472 ILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGD 531
Query: 410 -------------------------------------------VHSFIAGDTSHSLVHKI 426
+H F A D HS +I
Sbjct: 532 YILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEI 591
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
+ + +IK GY+ K HSEKLA+AFGLI + PG+ +R+
Sbjct: 592 YNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRI 651
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK VSK REI++ D RFHHF +G+CSC DYW
Sbjct: 652 TKNLRVCTDCHNATKLVSKV----FNREIVVRDRTRFHHFKEGSCSCNDYW 698
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 23/144 (15%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I GFT A+ F M + +QP+ + +L C++++ G++IH
Sbjct: 96 IRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIH-------- 147
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
ALI G G+ FV N+LI MY CG ++ R F+ M E +
Sbjct: 148 --------ALIMKCGFGSHGFVKNTLIHMYANCGEVEV--ARRVFDEMS-----ERNVRT 192
Query: 354 YCCMVDLLARAGQFDDTLNFMKKM 377
+ M ++G +++ + +M
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEM 216
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 170/587 (28%), Positives = 248/587 (42%), Gaps = 175/587 (29%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG ++ A +F+ MP +N SW +M+ Y G E + LF +++EGV
Sbjct: 209 CG-DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV--------- 258
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
DV D VL CG L L G +
Sbjct: 259 -----DVTDV--------------SVLAALQACG---------------ELGCLDEGMRV 284
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L + L+S++ V N+L+ Y+KC+ + +A F ++ ++ VSWNAM+ G A
Sbjct: 285 H-ELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCA---- 339
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G E A+ F+RM +++P++ +L V+ A A + + IHGY +R
Sbjct: 340 --------QNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR 391
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG-------- 327
H+ V ALI + WN++I YG G
Sbjct: 392 LHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVEL 451
Query: 328 -------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
A +EG YF MK++Y +EP ME Y MVDLL
Sbjct: 452 FEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLG 511
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----- 407
RAG+ D+ F++KMP +P + C N ++AE +A+ +FEL P
Sbjct: 512 RAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVL 571
Query: 408 --------------------------------------GKVHSFIAGDTSHSLVHKISEK 429
++H+F +G T+H +I +
Sbjct: 572 LANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSR 631
Query: 430 LMRLYSEIKKIGYMKRIPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
L +L EIK +GY+ + HSEKLA+AFGLI T+PG+ +++ KNL
Sbjct: 632 LAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNL 691
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH+ TK +S REIIM D RFHHF DG CSCGDYW
Sbjct: 692 RVCNDCHNATKLISLVTG----REIIMRDIQRFHHFKDGKCSCGDYW 734
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 28/150 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ LE + V +++D Y KC ++ A F + K+ VSWNAM+ GYA
Sbjct: 189 RSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYA---------- 238
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q GD AL F+RM++ + +S+ L AC ++ G +H ++R
Sbjct: 239 --QNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR------ 290
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
GL + V N+LI MY +C
Sbjct: 291 ----------IGLDSNVSVMNALITMYSKC 310
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 42/226 (18%)
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
PVL F ++ A G+ L G+ +H L ++S+ L +L + Y
Sbjct: 57 PVLRTFTSLLKLCAARGD-----------LATGRAVHAQ-LAARGIDSEALAATALANMY 104
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
AKCR A F ++ + V+WNA++AGYA G A+E RM
Sbjct: 105 AKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGL------------ARMAMEMVVRMQ 152
Query: 255 QTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SI 306
+ + + P++I+L VL ACA + +E H + +R ++ V A++ I
Sbjct: 153 EEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDI 212
Query: 307 QGLGT--------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+ S WN++ID Y + G E F M +E
Sbjct: 213 RAARVVFDWMPTKNSVSWNAMIDGYAQNG--DSREALALFNRMVEE 256
>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 809
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 184/690 (26%), Positives = 288/690 (41%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGM----------------FEKM 65
+ + + C L +G ++H L+ G ++L A G+ F++M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM 196
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
PER++ SW +++ Y+ G + + + +E V A S L+ VGK
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF-------------- 158
+++ Y + F+ + ++DM+ KCG +E A F+ E++
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ G+ IH ++ L+ ++ V
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG-LDRNVSVV 375
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y KC+ + A F K++ + LVSWNAM I GF Q G AL
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM------------ILGFAQNGRPIDAL 423
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FS+M ++P+T + V+ A A++ K IHG V+R + + V AL+ +
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMY 483
Query: 308 GLGTGSFV---------------WNSLIDMYG---------------RCGAIQKN----- 332
+ WN++ID YG + G I+ N
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL 543
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G + F MMK+ Y++E +M+ Y MVDLL RAG+ ++ +F+ +MP
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P+ C N + AE AA LFEL P G
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+VHSF +G T+H KI L +L IK+ GY+
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K HSEKLA++FGL++T+ G+ + V KNLR+C DCH+ TKY+S
Sbjct: 724 NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVT 783
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFHHF +GACSCGDYW
Sbjct: 784 G----REIVVRDMQRFHHFKNGACSCGDYW 809
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV--AHCKFSKIKQKHLVSWN 219
S LK ++I P + K+ L + L+ + CRY V A F I K V ++
Sbjct: 48 SSLKELRQILPL-VFKNGLYQEHFFQTKLVSLF--CRYGSVDEAARVFEPIDSKLNVLYH 104
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
ML G+A + D + AL+FF RM D++P + + +L C +
Sbjct: 105 TMLKGFA------------KVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELR 152
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+GKEIHG +++ +G + L ++ GL +MY +C Q NE + F+
Sbjct: 153 VGKEIHGLLVK------SGFSLDLFAMTGLE----------NMYAKCR--QVNEARKVFD 194
Query: 340 MM 341
M
Sbjct: 195 RM 196
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 182/639 (28%), Positives = 259/639 (40%), Gaps = 195/639 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFL 59
PD +VT + C L +VHA + G++ + A
Sbjct: 117 PD--SVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAAR 174
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+ MP RN SW +M+ Y G E + LF+ ++ EGV DV D
Sbjct: 175 AVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGV--------------DVTD 220
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
VL CG L L + +H L +
Sbjct: 221 A--------------SVLAALQACG---------------ELGYLDEVRRVH-ELLVRVG 250
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEITGFT 238
L S++ V N+L+ YAKC+ +A F+++ +K +SWNAM I GFT
Sbjct: 251 LSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAM------------ILGFT 298
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q E A F+RM +++P++ +L V+ A A + + IHGY +RH +
Sbjct: 299 QNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVY 358
Query: 299 VGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------------ 331
V ALI + WN++I YG G Q
Sbjct: 359 VLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTG 418
Query: 332 ---------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+EG +YF MKK+Y +EP ME Y MVDLL RAG+ D+
Sbjct: 419 SLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEA 478
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS------------- 407
+F+K MP EP + C N ++AE +A+ +FEL P
Sbjct: 479 WSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANA 538
Query: 408 ------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+VH+F +G T+H I +L +L EI
Sbjct: 539 SMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEI 598
Query: 438 KKIGYMKRIPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
K +GY+ + HSEKLA+A+GLI T+PG+ +++ KNLR+C DCH+
Sbjct: 599 KDMGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHN 658
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK +S REIIM D RFHHF DG CSCGDYW
Sbjct: 659 ATKLISLLTG----REIIMRDIQRFHHFKDGKCSCGDYW 693
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 31/169 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+ +H L+ L S+ + + +L + Y KCR A F ++ + V+WNA++A
Sbjct: 32 LATGRAVHAQ-LEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVA 90
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLG 281
GYA G +A+E RM + +P++++L VL ACA +
Sbjct: 91 GYARNGL------------PSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+E+H + LR GL V +++D Y +CGA++
Sbjct: 139 REVHAFALR----------------AGLDELVNVSTAVLDAYCKCGAVE 171
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 173/675 (25%), Positives = 280/675 (41%), Gaps = 213/675 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G++ FL +F+ +P +F W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 85 YYEEIV------NLFYLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++++ + L + D + KACS L ++G+ V+ + + F+ + V+
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KC R+ A FE
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV 218
Query: 156 -----------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVA 203
F+ L LK G+ IH +K ++E DLL+ SL YAKC + A
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATA 276
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K+K +L+ WNAM++GYA G+ E A++ F MI D++P+TI
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYARE------------AIDMFHEMINKDVRPDTI 324
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQG-------- 308
S++ ++ACAQV + + ++ YV R + + ALI S++G
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 309 LGTGSFVWNSLIDMYG---------------RCGAIQKN------------------EGW 335
L VW+++I YG G + N EGW
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW 444
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP 389
+F M ++ + P + Y C++DLL RAG D +K MP +P C
Sbjct: 445 WFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503
Query: 390 ----DIAEHAARHLFELEPLSSG------------------------------------- 408
++ E+AA+ LF ++P ++G
Sbjct: 504 HRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-------------- 448
++ +F GD SH +I ++ + S +K+ G++ A
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
C HSE++A+A+GLIST G+PLR+ KNLR C +CH+ TK +SK +REI++ D R
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLV----DREIVVRDTNR 679
Query: 509 FHHFVDGACSCGDYW 523
FHHF DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 178/653 (27%), Positives = 275/653 (42%), Gaps = 219/653 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL---------------------C 56
PD T++ + C + L LG Q+H+ I G+ L C
Sbjct: 269 PDRFTLSG--VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326
Query: 57 AFLGMFEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEGV----------YKAC 105
A +F+++ + NVFSWT+M+ G GY EE ++LF +I V KAC
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD----- 157
+ L R+G+ V+ + + + F CV ++ M+ + GR++ A F+ EK+
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYN 446
Query: 158 -------------------------------FSNLSLLK---------HGKEIHPHHLKK 177
F+ SLL G++IH +K
Sbjct: 447 TVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIK- 505
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V N+L+ Y++C ++ A F ++ ++++SW ++ ITGF
Sbjct: 506 SGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI------------ITGF 553
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
++G ALE F +M++ ++PN ++ VL+AC+
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSH----------------------- 590
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
VG+ NEGW++F+ M E+ + P ME Y CM
Sbjct: 591 -VGLV-----------------------------NEGWKHFKSMYTEHGVIPRMEHYACM 620
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--- 404
VD+L R+G + + F+ MP++ + C N ++ +HAA+ + E EP
Sbjct: 621 VDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDP 680
Query: 405 -----LSS-----------------------------------GKVHSFIAGDTSHSLVH 424
LS+ KVH F GDTSH
Sbjct: 681 AAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAA 740
Query: 425 KISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPL 470
+I ++L L +IKK+GY+ + HSEK+A+AFGLISTS P+
Sbjct: 741 EIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPI 800
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV KNLR+CGDCHS KY+S A REII+ D RFHH DG CSC +YW
Sbjct: 801 RVFKNLRICGDCHSAIKYISMATG----REIIVRDANRFHHIKDGRCSCNEYW 849
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 45/288 (15%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
TY+L ++C + + ++G VH L ++L + + S++ +Y+
Sbjct: 68 TYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQL-------------DSVTLNSLISLYSKC 114
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G +E+ ++F L+ +D+ + + N + L F+
Sbjct: 115 GQWEKATSIFQLM---------------GSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159
Query: 144 GRMEMASGEF----EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
E+ + S + G I +K L+SD+ V L+D + K R
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219
Query: 200 LKVAHCK-FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
V+ K F K+ +++ V+W M IT Q+G A++ F MI +
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLM------------ITRLMQFGYAGEAIDLFLEMILSGY 267
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+P+ +LSGV++ACA ++ LG+++H +RH + L VG LI++
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINM 315
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALG--GFR 231
L + DL+ D + NSL+ Y+KC + A F + + L+SW+AM++ +A GFR
Sbjct: 92 LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFR 151
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
AL F MI+ PN + AC+ + +G I G+V++
Sbjct: 152 --------------ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKT 197
Query: 292 -HIQLSTGVGIALISIQGLGTGSFV 315
++Q VG LI + G G V
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLV 222
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 189/705 (26%), Positives = 283/705 (40%), Gaps = 211/705 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L +S DL P+ + TYA + G +H IV G + LG
Sbjct: 109 LRKSTDL-KPN--SSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYF 165
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+F++MPE++ W +M+ Y Y E + +F LI+E
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEK 156
+ A +EL++ R+G ++ + V + ++ KCG+++MAS EF
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRP 285
Query: 157 DFSNLSLLKHG--------------KE----------------------------IHPHH 174
D + + HG KE IH +
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYS 345
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
LK + L S V+ +L Y+K ++ A F + +K L SWNAM++GY
Sbjct: 346 LKSNFL-SHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY--------- 395
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
TQ G E A+ F M ++ PN ++++ +L+ACAQ+ LGK +H V +
Sbjct: 396 ---TQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 295 LSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK------- 331
S V ALI + GS WN++I YG G Q+
Sbjct: 453 SSIYVSTALIGMYA-KCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSE 511
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
EG F M Y EP+++ Y C+VD+L RAG
Sbjct: 512 MLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAG 571
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------K 409
L F++ MP +P + C + ++A + LFEL+P + G
Sbjct: 572 HLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSN 631
Query: 410 VHS-------------------------------------FIAGDTSHSLVHKISEKLMR 432
+HS F +GD SH V I EKL +
Sbjct: 632 IHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEK 691
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L ++++ GY + + HSE+LA+AFGLI+T PG+ +R+IKNLR+
Sbjct: 692 LEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRV 751
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ TK +SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 752 CLDCHTATKLISKIT----ERVIVVRDANRFHHFKDGVCSCGDYW 792
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
[Vitis vinifera]
Length = 1005
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 182/658 (27%), Positives = 268/658 (40%), Gaps = 212/658 (32%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-------------- 54
L Q M VT I C L+ L+LG +H + ++
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYA 476
Query: 55 ----LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----IDE------G 100
A L F +M R++ +W S++ Y +G +++FY L I+ G
Sbjct: 477 KCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVG 536
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V AC+ L D G ++ ++ + FE + VK ++DM+ KCG + A F + DF+
Sbjct: 537 VVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596
Query: 161 LSLL-----------KHGKE------------IHPHHLK--------------------- 176
+ H KE HP+ +
Sbjct: 597 DEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFH 656
Query: 177 ----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ S+ LV NSL+D YAKC L + F+++ K VSWNAML+GYA+
Sbjct: 657 ACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAV----- 711
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+G G+ A+ FS M ++ +Q +++S VL+AC RH
Sbjct: 712 -------HGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC-----------------RH- 746
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G ++ EG + F M +Y+++P +E
Sbjct: 747 ---------------------------------AGLVE--EGRKIFHSMSDKYHIKPDLE 771
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG FD+TL F+K MP EP + C N + E A HL +L
Sbjct: 772 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831
Query: 403 EP--------LSS-----------------------------------GKVHSFIAGDTS 419
EP LSS KVH+F GD S
Sbjct: 832 EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKS 891
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H + + L +++KIGY+ K + HSE+LA+ F L++T
Sbjct: 892 HPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTP 951
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PGS ++++KNLR+C DCH+ TK++SK R II+ D RFHHF DG CSC DYW
Sbjct: 952 PGSTIQIVKNLRVCADCHTTTKFISKITT----RRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 168/400 (42%), Gaps = 105/400 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-----------------C 51
+SM L + +V+ +F KL+N+EL +H ++ C
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKC 276
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDE----GV 101
G ++ +F++M +++ SW +MM Y G + E++ LF + I++
Sbjct: 277 G-DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF 158
+ A +E D GK+++ + + + + V P++ M+ KCG E A F + +D
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395
Query: 159 ---------------------------------------------SNLSLLKHGKEIHPH 173
++LSLLK GK IH
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+K D++SDL +L+ YAKC + A F+++ + +V+WN+++ GYA
Sbjct: 456 TVKA-DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA------- 507
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q GD A++ F ++ + + P+ ++ GV+ ACA + G IHG +++
Sbjct: 508 -----QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK--- 559
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G + V N+LIDMY +CG++ E
Sbjct: 560 -------------LGFESDCHVKNALIDMYAKCGSLPSAE 586
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 165/401 (41%), Gaps = 108/401 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ T T+ L + C NL+ G+ H + G+E F+G
Sbjct: 127 PDKYTFTFVL--KACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F+KMP+R+V +W +M+ + E V+ F + GV + +L
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
+ + + ++ Y+ F ++ V ++D++ KCG +++A F++
Sbjct: 245 NIELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMA 302
Query: 156 ------------KDFSNLSL----------------------LKHGKEIHPHHLKKDDLE 181
+ F + L L+ GKEIH L++ ++
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR-ID 361
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD+LV LM YAKC + A F ++ + LV+W+A++A G+ EE
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEE-------- 413
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M M+PN ++L +L ACA + KLGK IH + ++ + G
Sbjct: 414 ----ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469
Query: 302 ALISIQ---GLGTGSF------------VWNSLIDMYGRCG 327
AL+S+ G T + WNSLI+ Y + G
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 145/370 (39%), Gaps = 101/370 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG----------VELCAFL-------GMFEKMPE 67
Y + C LN L +Q+HA +IV G + L + +F+ P
Sbjct: 35 YPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPN 91
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
+ W SM+ Y Y E + ++Y ++++G+ D Y + +K
Sbjct: 92 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL------------EPDKYTFTFVLK-- 137
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
AC G + + G + HG+ + + LE D+ +
Sbjct: 138 --ACT-----------GALNLQEG-----------VWFHGE------IDRRGLERDVFIG 167
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
L+D Y+K LK A F K+ ++ +V+WNAM+A G +Q D A+
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA------------GLSQSEDPCEAV 215
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FF M ++P+++SL + ++ +L + IHGYV R
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF-------------- 261
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
S V N LID+Y +CG + + R F+ M + ++ + M+ A G F
Sbjct: 262 ----SSAVSNGLIDLYSKCGDV--DVARRVFDQMVDQDDV-----SWGTMMAGYAHNGCF 310
Query: 368 DDTLNFMKKM 377
+ L KM
Sbjct: 311 VEVLELFDKM 320
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 50/262 (19%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L++ Y+ +A F + WN+M+ Y T QY + ALE
Sbjct: 69 LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAY---------TRSKQYNE---ALEM 116
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
+ M++ ++P+ + + VL AC + G HG + R +GL
Sbjct: 117 YYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR----------------RGL 160
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
F+ L+DMY + G +++ F+ M K + + M+ L+++ +
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAR--EVFDKMPKR-----DVVAWNAMIAGLSQSEDPCE 213
Query: 370 TLNFMKKMPF---EPSSAEPCN--PDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424
++F + M EPSS N P I + L +E S +H ++
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICK-----LSNIELCRS--IHGYV---FRRDFSS 263
Query: 425 KISEKLMRLYSEIKKIGYMKRI 446
+S L+ LYS+ + +R+
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRV 285
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 167/652 (25%), Positives = 276/652 (42%), Gaps = 193/652 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------- 55
N LL + M + T++ + + C ++ L G QVHA ++ G +
Sbjct: 104 NALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLI 163
Query: 56 -----CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
C +G+ F+ MPER++ +W SM+ Y G ++E+V LF +++
Sbjct: 164 QMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILE-------- 215
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+ I+F+ ++ + + CGR+ +NL +
Sbjct: 216 ---------------LRIEFDDVT-----MISVLMACGRL------------ANLEI--- 240
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
E+ ++ L + + SL+D YAKC + A F ++ ++ +V+W+AM++GYA
Sbjct: 241 -GELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q + AL F M + ++ PN +++ VL +CA + ++ GK +H
Sbjct: 300 ------------QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHF 347
Query: 287 YVLRHHIQLSTGVGIALI-----------SIQGLGTGSF----VWNSLIDMYGRCG---- 327
Y+ + ++L+ +G LI S++ SF W +LI G
Sbjct: 348 YIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKM 407
Query: 328 -----------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
A ++G F M++++++EP +E Y CMV
Sbjct: 408 ALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMV 467
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
D+L RAG ++ F+ MPF P++ C N ++AE + H+ LEP SG
Sbjct: 468 DILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSG 527
Query: 409 K-------------------------------------------VHSFIAGDTSHSLVHK 425
VH F + D H +
Sbjct: 528 DYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKE 587
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I + L ++ +IK++GY+ K HSEKLA+A+GLI TSP + +R
Sbjct: 588 IHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIR 647
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KNLRMC DCH+ TK++S+ ER II+ D RFHHF DG CSC DYW
Sbjct: 648 ISKNLRMCRDCHNATKFISQV----FERMIIVRDRNRFHHFKDGLCSCNDYW 695
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC--RYLKVAHCKFSKIKQKHLVSWNAML 222
K +++H H LK L D ++ ++++ A + A F+ I + ++N M+
Sbjct: 35 KDLQQVHAHLLKTRRL-LDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMI 93
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
G A F + D AL F +M + +Q + + S VL AC+++K + G+
Sbjct: 94 RGLA----------FKRSPDN--ALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGE 141
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
++H +L+ G + FV N+LI MY CG I
Sbjct: 142 QVHALILK----------------SGFKSNEFVENTLIQMYANCGQI 172
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 173/673 (25%), Positives = 284/673 (42%), Gaps = 211/673 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q++A L+V G++ FL +F+K P+ +VF W +++ Y+ G
Sbjct: 93 QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152
Query: 85 YYEEIVNLFYLL-----IDEG-----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++ + ++ + +G V KACS L +G+ V+ + FE + V+
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KCG + A+ F
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272
Query: 156 ---------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHC 205
+ ++++ L+HGK IH +K + E DLL+ SL YAKC ++ VA
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLI--SLTSLYAKCGHVMVARL 330
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F++++ L+ WNAM++GY G+ EE A+E F M +++P++I++
Sbjct: 331 FFNQVENPSLIFWNAMISGYVKNGYAEE------------AIELFRLMKSKNIRPDSITV 378
Query: 266 SGVLAACAQVKGFKLGKEIHGYV----LRHHIQLSTGVGIALISIQGLGTGSFV------ 315
+ +AACAQ+ +L + + Y+ R+ + ++T + + FV
Sbjct: 379 TSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPD 438
Query: 316 -----WNSLIDMYG---------------RCGAIQKN------------------EGWRY 337
W++++ YG R + N EGW
Sbjct: 439 KDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDL 498
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F M+ +Y +EP + Y C+VDLL RAG D NF+ MP EP + C
Sbjct: 499 FHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHR 557
Query: 388 NPDIAEHAARHLFELEPLSSG--------------------------------------- 408
+ + E+AA LF L+P ++G
Sbjct: 558 HVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVI 617
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CG 450
K+ +F AGD +H +I E++ L +K+ G++ + C
Sbjct: 618 EINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCN 677
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSE+LA+A+GLIST PG+ LR+ KNLR C +CH+ K +SK REI++ D RFH
Sbjct: 678 HSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLV----SREIVVRDACRFH 733
Query: 511 HFVDGACSCGDYW 523
HF DGACSCGDYW
Sbjct: 734 HFKDGACSCGDYW 746
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 187/704 (26%), Positives = 283/704 (40%), Gaps = 209/704 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L +S DL P+ + TYA + G +H +V G + LG
Sbjct: 109 LRKSTDL-KPN--SSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYF 165
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+F++MPE++ W +M+ Y Y E + +F LI+E
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEK 156
+ A +EL++ R+G ++ + V + ++ KCG+++M S EF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 157 DFSNLSLLKHG--------------KE----------------------------IHPHH 174
D + + HG KE IH +
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYC 345
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
LK + L S V+ +L Y+K ++ A F + +K L SWNAM++GY
Sbjct: 346 LKSNFL-SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY--------- 395
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
TQ G E A+ F M +++ PN ++++ +L+ACAQ+ LGK +H V +
Sbjct: 396 ---TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 295 LSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK-------- 331
S V ALI + WN++I YG G Q+
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
EG F M Y EP+++ Y CMVD+L RAG
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------KV 410
L F++ M EP S+ C + ++A + LFEL+P + G +
Sbjct: 573 LQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNI 632
Query: 411 HS-------------------------------------FIAGDTSHSLVHKISEKLMRL 433
HS F +GD SH V +I EKL +L
Sbjct: 633 HSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKL 692
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++ GY + + HSE+LA+AFGLI+T PG+ +R+IKNLR+C
Sbjct: 693 EGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 753 LDCHTVTKLISKIT----ERVIVVRDANRFHHFKDGVCSCGDYW 792
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 182/658 (27%), Positives = 268/658 (40%), Gaps = 212/658 (32%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-------------- 54
L Q M VT I C L+ L+LG +H + ++
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYA 476
Query: 55 ----LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----IDE------G 100
A L F +M R++ +W S++ Y +G +++FY L I+ G
Sbjct: 477 KCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVG 536
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V AC+ L D G ++ ++ + FE + VK ++DM+ KCG + A F + DF+
Sbjct: 537 VVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTK 596
Query: 161 LSLL-----------KHGKE------------IHPHHLK--------------------- 176
+ H KE HP+ +
Sbjct: 597 DEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFH 656
Query: 177 ----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ S+ LV NSL+D YAKC L + F+++ K VSWNAML+GYA+
Sbjct: 657 ACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAV----- 711
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+G G+ A+ FS M ++ +Q +++S VL+AC RH
Sbjct: 712 -------HGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC-----------------RHX 747
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G ++ EG + F M +Y+++P +E
Sbjct: 748 ----------------------------------GLVE--EGRKIFHSMSDKYHIKPDLE 771
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG FD+TL F+K MP EP + C N + E A HL +L
Sbjct: 772 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 831
Query: 403 EP--------LSS-----------------------------------GKVHSFIAGDTS 419
EP LSS KVH+F GD S
Sbjct: 832 EPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKS 891
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H + + L +++KIGY+ K + HSE+LA+ F L++T
Sbjct: 892 HPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTP 951
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PGS ++++KNLR+C DCH+ TK++SK R II+ D RFHHF DG CSC DYW
Sbjct: 952 PGSTIQIVKNLRVCADCHTTTKFISKITT----RRIIVRDATRFHHFEDGICSCNDYW 1005
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 168/400 (42%), Gaps = 105/400 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-----------------C 51
+SM L + +V+ +F KL+N+EL +H ++ C
Sbjct: 217 FFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKC 276
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDE----GV 101
G ++ +F++M +++ SW +MM Y G + E++ LF + I++
Sbjct: 277 G-DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF 158
+ A +E D GK+++ + + + + V P++ M+ KCG E A F + +D
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395
Query: 159 ---------------------------------------------SNLSLLKHGKEIHPH 173
++LSLLK GK IH
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+K D++SDL +L+ YAKC + A F+++ + +V+WN+++ GYA
Sbjct: 456 TVKA-DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA------- 507
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q GD A++ F ++ + + P+ ++ GV+ ACA + G IHG +++
Sbjct: 508 -----QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVK--- 559
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G + V N+LIDMY +CG++ E
Sbjct: 560 -------------LGFESDCHVKNALIDMYAKCGSLPSAE 586
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 165/401 (41%), Gaps = 108/401 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ T T+ L + C NL+ G+ H + G+E F+G
Sbjct: 127 PDKYTFTFVL--KACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAR 184
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F+KMP+R+V +W +M+ + E V+ F + GV + +L
Sbjct: 185 EVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLS 244
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
+ + + ++ Y+ F ++ V ++D++ KCG +++A F++
Sbjct: 245 NIELCRSIHGYVFRRDF--SSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMA 302
Query: 156 ------------KDFSNLSL----------------------LKHGKEIHPHHLKKDDLE 181
+ F + L L+ GKEIH L++ ++
Sbjct: 303 GYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR-ID 361
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD+LV LM YAKC + A F ++ + LV+W+A++A G+ EE
Sbjct: 362 SDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEE-------- 413
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M M+PN ++L +L ACA + KLGK IH + ++ + G
Sbjct: 414 ----ALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469
Query: 302 ALISIQ---GLGTGSF------------VWNSLIDMYGRCG 327
AL+S+ G T + WNSLI+ Y + G
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 145/370 (39%), Gaps = 101/370 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG----------VELCAFL-------GMFEKMPE 67
Y + C LN L +Q+HA +IV G + L + +F+ P
Sbjct: 35 YPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPN 91
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
+ W SM+ Y Y E + ++Y ++++G+ D Y + +K
Sbjct: 92 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGL------------EPDKYTFTFVLK-- 137
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
AC G + + G + HG+ + + LE D+ +
Sbjct: 138 --ACT-----------GALNLQEG-----------VWFHGE------IDRRGLERDVFIG 167
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
L+D Y+K LK A F K+ ++ +V+WNAM+A G +Q D A+
Sbjct: 168 AGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA------------GLSQSEDPCEAV 215
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FF M ++P+++SL + ++ +L + IHGYV R
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF-------------- 261
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
S V N LID+Y +CG + + R F+ M + ++ + M+ A G F
Sbjct: 262 ----SSAVSNGLIDLYSKCGDV--DVARRVFDQMVDQDDV-----SWGTMMAGYAHNGCF 310
Query: 368 DDTLNFMKKM 377
+ L KM
Sbjct: 311 VEVLELFDKM 320
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 50/262 (19%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L++ Y+ +A F + WN+M+ Y T QY + ALE
Sbjct: 69 LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAY---------TRSKQYNE---ALEM 116
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
+ M++ ++P+ + + VL AC + G HG + R +GL
Sbjct: 117 YYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR----------------RGL 160
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
F+ L+DMY + G +++ F+ M K + + M+ L+++ +
Sbjct: 161 ERDVFIGAGLVDMYSKMGDLKRAR--EVFDKMPKR-----DVVAWNAMIAGLSQSEDPCE 213
Query: 370 TLNFMKKMPF---EPSSAEPCN--PDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424
++F + M EPSS N P I + L +E S +H ++
Sbjct: 214 AVDFFRSMQLVGVEPSSVSLLNLFPGICK-----LSNIELCRS--IHGYV---FRRDFSS 263
Query: 425 KISEKLMRLYSEIKKIGYMKRI 446
+S L+ LYS+ + +R+
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRV 285
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 186/704 (26%), Positives = 281/704 (39%), Gaps = 206/704 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L M L T+A + +E G+QVH +I G++ F+G
Sbjct: 180 LFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYS 239
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ M RN SW SM+ + G E LFY + EGV
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFAT 299
Query: 102 -YKACSELKDHRVGKDVY--------DYMISIKFE------------------------G 128
K C+ +K+ K ++ D+ ++IK
Sbjct: 300 VIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQ 359
Query: 129 NACVKRPVLDMFIKCGRMEMASGEF--------EEKDFSNLSLLKHGKEIHPHHLK---- 176
N ++ +++ GR + A F F+ ++L + P +
Sbjct: 360 NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVV 419
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K + E+ V +L D Y+K A F I +K +V+W+AML+GYA
Sbjct: 420 KTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYA---------- 469
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLGKEIHGYVLRHHIQL 295
Q GD E A++ F ++ + ++PN + S VL ACA + GK+ H ++
Sbjct: 470 --QMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSN 527
Query: 296 STGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK--------- 331
+ V AL+++ + + WNS+I Y + G +K
Sbjct: 528 ALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMR 587
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
NEG RYF++M K+Y++ P ME Y CMVDL +RAG
Sbjct: 588 SKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGML 647
Query: 368 DDTLNFMKKMPFEPSSAE-------PC----NPDIAEHAARHLFELEPLSSG-------- 408
+ ++ + KMPF P+ A C N + E AA L L+P S
Sbjct: 648 EKAMDLINKMPF-PAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNI 706
Query: 409 -----------------------------------KVHSFIAGDTSHSLVHKISEKLMRL 433
K SF+AGD SH +I KL L
Sbjct: 707 YATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEEL 766
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+K GY K + HSE+LA+AFGLI+T PG+P++++KNLR+C
Sbjct: 767 SIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVC 826
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ K +SK E R+I++ D+ RFHHF G+CSCGDYW
Sbjct: 827 GDCHTVIKLISKIEG----RDIVVRDSNRFHHFKGGSCSCGDYW 866
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H +K +E D+ V SL+D Y K ++ F +++ K++VSW ++LAGY
Sbjct: 111 GKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G E+ AL+ FS+M ++PN + + VL A + G ++H
Sbjct: 170 QNGLNEQ------------ALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
V++ GL + FV NS+++MY +
Sbjct: 218 MVIK----------------SGLDSTIFVGNSMVNMYSK 240
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 177/673 (26%), Positives = 276/673 (41%), Gaps = 211/673 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G+ FL +F++ PE +VF W +++ Y+
Sbjct: 89 QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148
Query: 85 YYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++ + + ++ + GV KACS + VGK V+ + + FE + V+
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208
Query: 135 PVLDMFIKCGRMEMASGEFEEKD------------------------------------- 157
++ ++ KCGR+E A FE D
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268
Query: 158 -----------FSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHC 205
++++ L+ GK IH +K + E DLL+ SL YAKC + VA
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLI--SLTAMYAKCGQVMVARS 326
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F +++ +++ WNAM++GYA G+ E G F MI +++ ++I++
Sbjct: 327 FFDQMEIPNVMMWNAMISGYAKNGYTNEAVGL------------FQEMISKNIRTDSITV 374
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLG 310
+ ACAQV L K + Y+ + + V ALI + + L
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434
Query: 311 TGSFVWNSLIDMYGRCGAIQK---------------------------------NEGWRY 337
VW+++I YG G Q EGW
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWEL 494
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F MK Y +E + Y C+VDLL R+G ++ +F+ MP EP + C
Sbjct: 495 FHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYR 553
Query: 388 NPDIAEHAARHLFELEPLSSG--------------------------------------- 408
+ + E+AA LF L+P ++G
Sbjct: 554 HVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLI 613
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CG 450
K+ +F GD SH +I E+L L +K+ G++ I + C
Sbjct: 614 EINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCN 673
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSE+LA+A+GLIST+PG+ LR+ KNLR C +CHS TK +SK REI++ D RFH
Sbjct: 674 HSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVN----REIVVRDANRFH 729
Query: 511 HFVDGACSCGDYW 523
HF +G CSC DYW
Sbjct: 730 HFKNGVCSCRDYW 742
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+H +IH + +ES LV ++ + A F + + + WNA++ G
Sbjct: 85 RHLNQIHAQLVVSGLVESGFLVTK-FVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRG 143
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
Y+ F +GD A+E +SRM + + P+ +L VL AC+ V ++GK +
Sbjct: 144 YSSHNF---------FGD---AIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRV 191
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
HG + R G + FV N L+ +Y +CG +++
Sbjct: 192 HGQIFR----------------LGFESDVFVQNGLVALYAKCGRVEQ 222
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 170/633 (26%), Positives = 260/633 (41%), Gaps = 192/633 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY + + C L +E+G +VH+ ++VCG+E ++G +F++M
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
ER++ SW +M+ Y +F L+ G++ C+ L
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTL----------------- 265
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
L + C ++L +K GK IH + ++ +
Sbjct: 266 -----------LGLLSAC---------------ADLKAVKEGKVIHGYAVRNSIGNYNKF 299
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
NSL++ Y C + A F +++ K VSWN+M+ GYA + GD
Sbjct: 300 FTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA------------RNGDAFE 347
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+L F RM P+ ++ VL AC Q+ + G IH Y+++ +T VG AL+
Sbjct: 348 SLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVD 407
Query: 306 IQG--------------LGTGSFV-WNSLIDMYGRCG----------------AIQKN-- 332
+ + S V W++++ YG G I N
Sbjct: 408 MYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGV 467
Query: 333 ---------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG F M+KEYN++PA+ Y CMVDLL RAG D+ ++ M
Sbjct: 468 FTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTM 527
Query: 378 PFEPSSAEPC----------NPDIAEHAARHLFELEP--LSS------------------ 407
+P+S N +AE +A+ +F++ P +SS
Sbjct: 528 EIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVE 587
Query: 408 -----------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-- 442
VH F+ GD SH I KL L ++K+ GY
Sbjct: 588 RVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKP 647
Query: 443 ------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
+K HSE+LA+AF LI+T PG+ +R+ KNLR+CGDCH+ TK +S
Sbjct: 648 DTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLIS 707
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ REIIM D +RFHHF+ G CSCGDYW
Sbjct: 708 ELTG----REIIMRDIHRFHHFIKGFCSCGDYW 736
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 148/360 (41%), Gaps = 63/360 (17%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ Q + + G Q+HAH+I + E N + T + Y G
Sbjct: 65 LLQSFTNTKSFKQGQQLHAHMISFSI------------LENNTYLNTKLAAFYAGCGLMS 112
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL--DMFIKCGR 145
+ +F +G+ S L +++MI +K VL +M R
Sbjct: 113 QAEVIF-----DGIVLKNSFL---------WNFMIRGYASNGLPMKSLVLYREMLCFGQR 158
Query: 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
+ + F K +L L++ G+ +H + LESD+ V NSL+ YAK + A
Sbjct: 159 ADNFTYPFVLKACGDLLLVEIGRRVHSE-VVVCGLESDIYVGNSLLAMYAKFGDMGTARM 217
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F ++ ++ L SWN M++GYA + D TA F M + + + +L
Sbjct: 218 VFDRMAERDLTSWNTMISGYA------------KNADSGTAFLVFDLMGKAGLFADCTTL 265
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
G+L+ACA +K K GK IHGY +R+ I F NSLI+MY
Sbjct: 266 LGLLSACADLKAVKEGKVIHGYAVRNSIG---------------NYNKFFTNSLIEMYCN 310
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
C + + R FE ++ + + + M+ AR G ++L ++M + S +
Sbjct: 311 CNCMV--DARRLFERVRWKDTV-----SWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 30/135 (22%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------- 60
++D + PD+ VT+ + C ++ L G+ +H++L+ G + +G
Sbjct: 356 ALDGSGPDQ--VTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCG 413
Query: 61 -------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDEGVY----K 103
+F++MP++++ SW++M+ Y + G E +++ ++ D GV+
Sbjct: 414 SLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILS 473
Query: 104 ACSELKDHRVGKDVY 118
ACS GK+++
Sbjct: 474 ACSHAGLVVEGKEIF 488
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 184/682 (26%), Positives = 295/682 (43%), Gaps = 185/682 (27%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------- 52
+KNV+ S L N +E + + +F K +HA L+V G
Sbjct: 1 MKNVSKKFSSYGLGNQNE-EIDFNFLFDSSTKT---PFAKCLHALLVVAGKVQSIFISTR 56
Query: 53 -VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY--LLIDE--- 99
V L A LG F+++P+++V++W SM+ Y G++ E + FY LL+ E
Sbjct: 57 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 116
Query: 100 ------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
V KAC L D G+ ++ + + F+ N V ++ M+ + G +A F
Sbjct: 117 DFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 173
Query: 154 EEKDFSNLS--------LLKHGKEIHP----HHLKKDDLESDLLVNNSLM----DFYAKC 197
++ F ++ L+++G ++ + ++ + + S++ D YAK
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKL 233
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-T 256
L AH F I K ++SWN ++ GYA G E A+E + M +
Sbjct: 234 GLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE------------AIEVYKMMEECK 281
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-------- 308
++ PN + +L A A V + G +IHG V++ ++ L V LI + G
Sbjct: 282 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 341
Query: 309 -------LGTGSFVWNSLIDMYGRCGAIQKN----------------------------- 332
S WN++I +G G +K
Sbjct: 342 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 401
Query: 333 ----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EG F +M+ EY ++P+++ Y CMVDLL RAG + +F+K MP +P ++
Sbjct: 402 GFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGA 460
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSG------------------------------ 408
C N ++ + A+ LFE++ + G
Sbjct: 461 LLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 520
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
KV F G+ SH +I E+L L +++K +GY+
Sbjct: 521 KKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEE 580
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
K HSE+LA+AFG+IST P SP+R+ KNLR+CGDCH+ TK++S R +REI
Sbjct: 581 DEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS----RITQREI 636
Query: 502 IMIDNYRFHHFVDGACSCGDYW 523
++ D+ RFHHF DG CSCGDYW
Sbjct: 637 VVRDSNRFHHFKDGICSCGDYW 658
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 187/699 (26%), Positives = 290/699 (41%), Gaps = 210/699 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL----CAFLG----------- 60
PD T+ + + + C L NL++G +H + G++L CA L
Sbjct: 26 ARPDNYTLPF--VIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIED 83
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSE 107
+F+KM ER++ +WT M+G Y G E + LF + +EGV AC++
Sbjct: 84 ARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAK 143
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------------------- 144
L + + DY+ KF+ + + ++DM+ KCG
Sbjct: 144 LGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAM 203
Query: 145 -----------------RMEMASGEFEEK--------DFSNLSLLKHGKEIHPHHLKKDD 179
RM ++SG +K S+L L+ G+ IH H + K
Sbjct: 204 IAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH-HIVYKFG 262
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D V +L+D Y KCR ++ A F K+ ++ LV+W M+ GYA +
Sbjct: 263 LDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA------------E 310
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G+ +L F +M + + P+ +++ V+ ACA++ + I Y+ R QL +
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 370
Query: 300 GIALISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------- 331
G A+I + W+++I YG G +K
Sbjct: 371 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 430
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
EG R+F +M ++Y++ ++ Y C+VDLL RAG+ D+ L
Sbjct: 431 LPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 490
Query: 372 NFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG------------- 408
++ M E A + D+ AE AA L EL+P + G
Sbjct: 491 KLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAG 550
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F GDT+H +I E L L ++++
Sbjct: 551 RWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLE 610
Query: 439 KIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+GY +K HSEKLA+AFGLI+T +P+R+IKNLR+CGDCH+
Sbjct: 611 LVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHT 670
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VS R II+ D RFHHF +GACSCGDYW
Sbjct: 671 FCKLVSAITG----RVIIVRDANRFHHFKEGACSCGDYW 705
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 30/192 (15%)
Query: 140 FIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
I+CG R + + F + +L L+ G+ IH H + K L+ D V +L+D Y KCR
Sbjct: 21 LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYKFGLDLDHFVCAALVDMYVKCR 79
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
++ A F K++++ LV+W M+ GYA + G +L F +M + +
Sbjct: 80 EIEDARFLFDKMQERDLVTWTVMIGGYA------------ECGKANESLVLFEKMREEGV 127
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
P+ +++ V+ ACA++ + I Y+ R QL +G A
Sbjct: 128 VPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA---------------- 171
Query: 319 LIDMYGRCGAIQ 330
+IDMY +CG ++
Sbjct: 172 MIDMYAKCGCVE 183
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 23/147 (15%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ GF + GD F +I+ +P+ +L V+ AC +K ++G+ IH V +
Sbjct: 2 VGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF-- 59
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
GL FV +L+DMY +C I+ + F+ M+ E +
Sbjct: 60 --------------GLDLDHFVCAALVDMYVKCREIE--DARFLFDKMQ-----ERDLVT 98
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ M+ A G+ +++L +KM E
Sbjct: 99 WTVMIGGYAECGKANESLVLFEKMREE 125
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 173/643 (26%), Positives = 266/643 (41%), Gaps = 213/643 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLG----MFEKMP 66
Y + C + G +VHAH+I E C LG + ++MP
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
ERNV SWT+M+ Y+ GY E ++LF ++ G V +C+ ++G+
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD---------------- 157
++ +I FE + V +LDM+ K G++ A F+ E+D
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659
Query: 158 -----------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
S L+ L HG+++H H L+ L +++ N
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK-LPFYVVLQN 718
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D Y+KC L + F + ++ ++SWNAML GY +++G G A+E
Sbjct: 719 SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGY------------SKHGLGREAVE 766
Query: 249 FFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M + + ++P++++ VL+ C+ G EI
Sbjct: 767 LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI----------------------- 803
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
++EM+ ++ EP +E Y C+VDL RAG+
Sbjct: 804 -----------------------------FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 834
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
++ F+KKMPFEP++A C N I E AR L E+E ++G
Sbjct: 835 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 894
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
+H+F A D SH ++ K+ L
Sbjct: 895 ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 954
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IK+ GY+ + GHSEKLALAFGLI T G+P+R+IKNLR+C
Sbjct: 955 IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 1014
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K++S R RE+ + D RFHH V G CSCGDYW
Sbjct: 1015 DCHNFAKFLS----RVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 115/254 (45%), Gaps = 40/254 (15%)
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
N +K +L+M I+ +E + + + + ++ G+ +H H +K E + +
Sbjct: 458 NRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTC-YEPPVYLRT 516
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+ Y KCR L A ++ ++++VSW AM++GY+ G+ E AL
Sbjct: 517 RLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASE------------ALH 564
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M+ + PN + + VL +C GF+LG++IH V++ +
Sbjct: 565 LFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFE-------------- 610
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC--MVDLLARAGQ 366
+ FV +SL+DMY + G I E R F+ + P + C ++ A+ G
Sbjct: 611 --SHIFVGSSLLDMYAKAGKI--CEARRVFDGL-------PERDVVSCTAIISGYAQLGL 659
Query: 367 FDDTLNFMKKMPFE 380
++ L+ +++ E
Sbjct: 660 DEEALDLFRRLQRE 673
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 177/653 (27%), Positives = 275/653 (42%), Gaps = 219/653 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL---------------------C 56
PD T++ + C + L LG Q+H+ I G+ L C
Sbjct: 269 PDRFTLSG--VISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMC 326
Query: 57 AFLGMFEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEGV----------YKAC 105
A +F+++ + NVFSWT+M+ G GY EE ++LF +I V KAC
Sbjct: 327 AARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD----- 157
+ L R+G+ V+ + + + F CV ++ M+ + GR++ A F+ EK+
Sbjct: 387 ANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYN 446
Query: 158 -------------------------------FSNLSLLK---------HGKEIHPHHLKK 177
F+ SLL G++IH +K
Sbjct: 447 TVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIK- 505
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V N+L+ Y++C ++ A F ++ ++++SW ++ ITGF
Sbjct: 506 SGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSI------------ITGF 553
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
++G ALE F +M++ ++PN ++ VL+AC+
Sbjct: 554 AKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSH----------------------- 590
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
VG+ NEGW++F+ M E+ + P ME Y C+
Sbjct: 591 -VGLV-----------------------------NEGWKHFKSMYTEHGVIPRMEHYACI 620
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--- 404
VD+L R+G + + F+ MP++ + C N ++ +HAA+ + E EP
Sbjct: 621 VDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDP 680
Query: 405 -----LSS-----------------------------------GKVHSFIAGDTSHSLVH 424
LS+ KVH F GDTSH
Sbjct: 681 AAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAA 740
Query: 425 KISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPL 470
+I ++L L +IKK+GY+ + HSEK+A+AFGLISTS P+
Sbjct: 741 EIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPI 800
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV KNLR+CGDCHS KY+S A REII+ D RFHH DG CSC +YW
Sbjct: 801 RVFKNLRICGDCHSAIKYISMATG----REIIVRDANRFHHIKDGRCSCNEYW 849
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 45/288 (15%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
TY+L ++C + + ++G VH L ++L + + S++ +Y+
Sbjct: 68 TYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQL-------------DSVTLNSLISLYSKC 114
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G +E+ ++F L+ +D+ + + N + L F+
Sbjct: 115 GQWEKATSIFRLM---------------GSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159
Query: 144 GRMEMASGEF----EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
E+ + S + G I +K L+SD+ V L+D + K R
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219
Query: 200 LKVAHCK-FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
V+ K F K+ +++ V+W M IT Q+G A++ F MI +
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLM------------ITRLMQFGYAGEAIDLFLDMIFSGY 267
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+P+ +LSGV++ACA ++ LG+++H +RH + L VG LI++
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINM 315
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALG--GFR 231
L + DL+ D + NSL+ Y+KC + A F + + L+SW+AM++ +A GFR
Sbjct: 92 LTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFR 151
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
AL F MI+ PN + AC+ + +G I G+V++
Sbjct: 152 --------------ALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKT 197
Query: 292 -HIQLSTGVGIALISIQGLGTGSFV 315
++Q VG LI + G G V
Sbjct: 198 GYLQSDVCVGCGLIDMFVKGRGDLV 222
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 266/643 (41%), Gaps = 213/643 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLG----MFEKMP 66
Y + C + G +VHAH+I E C LG + ++MP
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
ERNV SWT+M+ Y+ GY E ++LF ++ G V +C+ ++G+
Sbjct: 73 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD---------------- 157
++ +I FE + V +LDM+ K G++ A F+ E+D
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192
Query: 158 -----------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
S L+ L HG+++H H L+ L +++ N
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK-LPFYVVLQN 251
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D Y+KC L + F + ++ ++SWNAML GY +++G G A+E
Sbjct: 252 SLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGY------------SKHGLGREAVE 299
Query: 249 FFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M + + ++P++++ VL+ C+ G EI
Sbjct: 300 LFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEI----------------------- 336
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
++EM+ ++ EP +E Y C+VDL RAG+
Sbjct: 337 -----------------------------FYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 367
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
++ F+KKMPFEP++A C N I E AR L E+E ++G
Sbjct: 368 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 427
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
+H+F A D SH ++ K+ L
Sbjct: 428 ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 487
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IK+ GY+ + GHSEKLALAFGLI T G+P+R+IKNLR+C
Sbjct: 488 IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 547
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K++S+ RE+ + D RFHH V G CSCGDYW
Sbjct: 548 DCHNFAKFLSRVYG----REVSLRDKNRFHHIVGGTCSCGDYW 586
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 180/694 (25%), Positives = 296/694 (42%), Gaps = 209/694 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFL----------GMFE 63
+ T++ + + L ++ G Q+H +++ G L AF +F+
Sbjct: 195 SYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFD 254
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+M ER+V SW S++ Y G E+ +++F ++ G V+ C++ + +
Sbjct: 255 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISL 314
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------ 149
G+ V+ + + F +LDM+ KCG ++ A
Sbjct: 315 GRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAR 374
Query: 150 ---SGE----FEEKDFSNLS-----------------LLKHGKEIHPHHLKKDDLESDLL 185
+GE FEE + +S LL GK +H +K++D+ D+
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVH-EWIKENDMGFDIF 433
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V+N+LMD YAKC ++ A FS+++ K ++SWN ++ GY+ + E
Sbjct: 434 VSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANE------------ 481
Query: 246 ALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH------HIQLST- 297
AL F+ + ++ P+ +++ VL ACA + F G+EIHGY++R+ H+ S
Sbjct: 482 ALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLV 541
Query: 298 -------GVGIALISIQGLGTGSFV-WNSLIDMYG---------------RCGAIQKNE- 333
+ +A + + + V W +I YG R I+ +E
Sbjct: 542 DMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEI 601
Query: 334 -----------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
GWR+F +M+ E +EP +E Y C+VD+LAR G F++
Sbjct: 602 SFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIEN 661
Query: 377 MPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG------------------ 408
MP P + A C + +AE A +FELEP ++G
Sbjct: 662 MPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEV 721
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+V+ F+AGD+S+ KI L + + + + GY
Sbjct: 722 KRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYS 781
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K CGHSEKLA+A G+IS+ G +RV KNLR+CGDCH K++
Sbjct: 782 PLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFM 841
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK + REI++ D+ RFH F DG CSC +W
Sbjct: 842 SKLTR----REIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 43/248 (17%)
Query: 146 MEMASGEFE--EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+EM S F K FS+L + G+++H + LK E + V NSL+ FY K + A
Sbjct: 191 VEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNS-VGNSLVAFYLKNHRVDSA 249
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F ++ ++ ++SWN+++ GY G E L F +M+ + ++ +
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGL------------AEKGLSVFVQMLFSGIEIDLA 297
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
++ V A CA + LG+ +H + ++ A S + N+L+DMY
Sbjct: 298 TIVSVFAGCADSRLISLGRAVHCFGVK-----------ACFSRE-----DRFCNTLLDMY 341
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
+CG + + + EM + ++ Y M+ AR G + + FE
Sbjct: 342 SKCGDLDSAK-VVFREMSGR------SVVSYTSMIAGYAREGLAGEAVKL-----FEEME 389
Query: 384 AEPCNPDI 391
E +PD+
Sbjct: 390 EEGISPDV 397
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GKE+ + ++ + D + + L Y C LK A F ++K + + WN ++
Sbjct: 110 LKDGKEV-DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMN 168
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
A + GD ++ F +M+ + ++ ++ + S V + + ++ G++
Sbjct: 169 ELA------------KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQ 216
Query: 284 IHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGA 328
+HGY+L+ VG +L++ + WNS+I+ Y G
Sbjct: 217 LHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276
Query: 329 IQK 331
+K
Sbjct: 277 AEK 279
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
++ F + G+ + A++ + D+ P T L VL CA K K GKE+ ++ +
Sbjct: 67 QLRRFCESGNLKNAVKLLHVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
L + +G + L MY CG ++ E R F+ +K +E A+
Sbjct: 125 FVLDSNLG----------------SKLALMYTNCGDLK--EASRVFDQVK----IEKAL- 161
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKM 377
+ +++ LA++G F ++ KKM
Sbjct: 162 FWNILMNELAKSGDFSGSIGLFKKM 186
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 165/630 (26%), Positives = 272/630 (43%), Gaps = 172/630 (27%)
Query: 24 TYALIFQRCPK--LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T +F+R P+ +++ + + AHL + L +FE MP+R + SW +++ YN
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHL----GRMDLALSLFENMPDRTIVSWNAVIAGYN 270
Query: 82 -------VLGYYEEIVNLFYLLIDE----GVYKACSELKDHRVGKDVYDYMISIKFEGNA 130
L ++ +++ + DE V AC+ L +GK V+ Y++ +
Sbjct: 271 QNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIG 330
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
V ++ M+ K G +E A G ++ ++L+++ +L
Sbjct: 331 QVTNALISMYAKSGSVENARGVMQQAVMADLNVISF---------------------TAL 369
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
++ Y K +K A F + + +V+W AM+ GY Q G + A+E F
Sbjct: 370 LEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGY------------EQNGHNDEAMELF 417
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
MI++ +PN+ +++ VL+ CA + + GK+IH +R + S+ V +++++
Sbjct: 418 RLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYAR- 476
Query: 311 TGSF-----------------VWNSLI----------DMYG------RCGAIQK------ 331
+GS W S+I D G R G
Sbjct: 477 SGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVG 536
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+EG RYF+ ++ ++ + P M Y CMVDLLARAG F + F+++MP E
Sbjct: 537 VLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVE 596
Query: 381 PSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------------- 408
P + C N D+AE AA L ++P +SG
Sbjct: 597 PDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIW 656
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
+VH F A D H + +++ +IKK G++ +
Sbjct: 657 KRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQ 716
Query: 448 AC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ HSEKLA+AFGL+ST + LR++KNLR+C DCH+ K++SK
Sbjct: 717 SVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVA 776
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D RFHHF DG CSC DYW
Sbjct: 777 ----DREIILRDATRFHHFKDGFCSCKDYW 802
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 62/286 (21%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F +MPER+ SWT M+ N +G + E + +F ++ +G V +C+ +
Sbjct: 117 AVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATE 176
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
VG+ V+ +++ + V VL+M+ KCG E A FE ++S
Sbjct: 177 ARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSW----- 231
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
N+++ A + +A F + + +VSWNA++AGY
Sbjct: 232 ------------------NAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGY---- 269
Query: 230 FREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G AL FFSRM+ + M P+ +++ VL+ACA + +GK++H Y+
Sbjct: 270 --------NQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYI 321
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
LR + +G V N+LI MY + G+++ G
Sbjct: 322 LRSRMPY-------------IGQ---VTNALISMYAKSGSVENARG 351
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ ++ NSL+ YAK L A F+++ ++ VSW M + G +
Sbjct: 93 QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVM------------VVGLNRV 140
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G A++ F M+ + P +L+ VL++CA + +G+++H +V++ + LS+ V
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVK--LGLSSCVP 198
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+A NS+++MYG+CG + FE M E ++ + MV L
Sbjct: 199 VA--------------NSVLNMYGKCGDAETARA--VFERMP-----ERSVSSWNAMVSL 237
Query: 361 LARAGQFDDTLNFMKKMP 378
A G+ D L+ + MP
Sbjct: 238 DAHLGRMDLALSLFENMP 255
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 182/626 (29%), Positives = 274/626 (43%), Gaps = 161/626 (25%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM 77
P+ T+ + C + N+L G+ VH L+ G + FL T ++
Sbjct: 74 PNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLA-------------TKLI 120
Query: 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV---GKDVYDYMISIKFEGNACVKR 134
MY LG + + +F + +Y + + + GK++ D I + + G +
Sbjct: 121 NMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRF 180
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
+ C E++ + L+ GKEIH H L+ E+++ V +L+D Y
Sbjct: 181 TYTYVLKACVVSELS-----------VCPLRKGKEIHAHILRHG-YEANIHVMTTLLDVY 228
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
AK + A+ F + K+ VSW+AM+A +A + E+ ALE F M+
Sbjct: 229 AKFGSVSYANSVFCAMPTKNFVSWSAMIACFA----KNEMP--------MKALELFQLMM 276
Query: 255 --QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---- 308
+ PN++++ +L ACA + + GK IHGY+LR + V ALI++ G
Sbjct: 277 FEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGE 336
Query: 309 --LGTGSF---------VWNSLIDMYGRCG----AIQ----------------------- 330
+G F WNSLI +YG G AIQ
Sbjct: 337 VLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGA 396
Query: 331 ------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP--- 381
EG FE M +Y + P ME Y CMVDLL RA + + + ++ M FEP
Sbjct: 397 CSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPT 456
Query: 382 -------SSAEPCNPDIAEHAARHLFELEPLSSG-------------------------- 408
S CN ++AE A+ LFELEP ++G
Sbjct: 457 VWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLE 516
Query: 409 -----------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-------- 443
KV+SF++ D + + +I L++L +E+K GY+
Sbjct: 517 ARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLY 576
Query: 444 ------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRER 497
K GHSEKLA+AFGLI+T+ G +R+ KNLR+C DCH+ TK++SK
Sbjct: 577 DLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFAN--- 633
Query: 498 EREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFHHF DG CSCGDYW
Sbjct: 634 -REILVRDVNRFHHFRDGVCSCGDYW 658
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 170/634 (26%), Positives = 275/634 (43%), Gaps = 195/634 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLI--------------VCGVELCAFL----GMFEKM 65
T+ + + C +L +L+LG+++H ++ VC C +L +F+ +
Sbjct: 114 TFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDI 173
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P++NV SWT+++ Y +G + E + D++ ++ +
Sbjct: 174 PDKNVVSWTAIISGYIGVGKFREAI-------------------------DMFRRLLEMN 208
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
++ VL + G ++ SGE+ K + +++ ++
Sbjct: 209 LAPDSFTIVRVLSACTQLG--DLNSGEWIHKCIMEMGMVR-----------------NVF 249
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V SL+D YAKC ++ A F + +K +VSW AM+ GYAL G +E
Sbjct: 250 VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE------------ 297
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F +M + +++P+ ++ GVL+ACA++ +LG+ + G V R+ + +G ALI
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357
Query: 306 IQG-LGTGS--------------FVWNSLID----------MYGRCGAIQK--------- 331
+ G+ S VWN++I +G G ++K
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+EG RYF M + +++ P++E Y CMVDLL RAG D+ ++ M
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 477
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------------ 409
P E ++ C + +AE A + L ELEP +SG
Sbjct: 478 PMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAA 537
Query: 410 -------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
VH F+ GD H L KI KL L ++K GY+
Sbjct: 538 KVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVP 597
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+ C HSEKLA+AFGLIS +P + +RV+KNLR+CGDCH K +
Sbjct: 598 TTDFVLFDIEEEEKEHFLGC-HSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLI 656
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S REI + DN RFH F +G+CSC DYW
Sbjct: 657 SSITG----REITVRDNNRFHCFREGSCSCNDYW 686
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 32/148 (21%)
Query: 187 NNSLMDFYAKCRY----LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+N L++ +C + F +IKQ ++ WN M I G
Sbjct: 45 DNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTM------------IRGLVSNDC 92
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A+EF+ M PN + VL ACA++ +LG +IH V++
Sbjct: 93 FDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVK------------ 140
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G FV SL+ +Y +CG ++
Sbjct: 141 ----GGFDCDVFVKTSLVCLYAKCGYLE 164
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 179/660 (27%), Positives = 282/660 (42%), Gaps = 190/660 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD V+ + C + G QVH + + G+ F+G
Sbjct: 248 PD--AVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 305
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE+M ++V SW +M+ Y+ +G +++ + LF ++++ ++ +V
Sbjct: 306 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF------------EKIREEKIELNVVT 353
Query: 120 YMISIKFEGNACVKRPVLDMF---IKCGR-------MEMASGEFEEKDFSNLSLLKHGKE 169
+ I + LD+F + CG + + SG ++ L HGKE
Sbjct: 354 WSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSG------CASAGTLLHGKE 407
Query: 170 IHPHHLK------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAM 221
H H +K ++D DL+V N+L+D Y+KC+ K A F I K + +V+W +
Sbjct: 408 THCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFK 279
+ G A Q+G+ ALE FS+M+Q D + PN ++S L ACA++ +
Sbjct: 468 IGGNA------------QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 515
Query: 280 LGKEIHGYVLRHHIQL---------------STGVGIALISIQGLGTGSFV-WNSLIDMY 323
G++IH YVLR+ + S V A + + + V W SL+ Y
Sbjct: 516 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGY 575
Query: 324 GRCG----------AIQK-----------------------NEGWRYFEMMKKEYNMEPA 350
G G +QK ++G YF M K++ + P
Sbjct: 576 GMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPG 635
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLF 400
E Y CMVDLL+RAG+ D+ + ++ MP +P+ A C N ++ E+AA L
Sbjct: 636 AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLL 695
Query: 401 ELEPLSSGK-------------------------------------------VHSFIAGD 417
ELE + G +F AGD
Sbjct: 696 ELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGD 755
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIS 463
SH + +I + L L IK +GY+ K HSEKLALA+G+++
Sbjct: 756 WSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILT 815
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T+PG+P+R+ KNLR CGDCHS Y+S + E + D+ RFHHF +G+CSC YW
Sbjct: 816 TAPGAPIRITKNLRACGDCHSAFTYISIIIEHEII----VRDSSRFHHFKNGSCSCRGYW 871
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 120/532 (22%), Positives = 212/532 (39%), Gaps = 122/532 (22%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------- 53
L L + + T + +F +C L + EL H L+V G+
Sbjct: 34 LFLTTFFFSTASSTTDLTSTLFHQCKSLASAEL---THQQLLVQGLPHDPTHIISMYLTF 90
Query: 54 -ELCAFLGMFEKM--PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
L + ++ VF W ++ LG+ E+++ L+ + G
Sbjct: 91 NSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPF 150
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD 157
V KAC E+ R G V+ + + FE N V ++ M+ +CG E A F+ E+
Sbjct: 151 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 210
Query: 158 FSNL-------------------------------------SLLK------------HGK 168
+L SL+ GK
Sbjct: 211 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 270
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY--- 225
++H + L+ E D+ V N+++D YAKC ++ A+ F ++K K +VSWNAM+ GY
Sbjct: 271 QVHGYALRSGLFE-DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329
Query: 226 -----ALGGF---REE------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
ALG F REE I G+ Q G G AL+ F +M+ +PN ++L
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+L+ CA GKE H + ++ + L G V N+LIDMY +
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDE---------NDPGDDLMVINALIDMYSK 440
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
C + + F+++ + + ++ + ++ A+ G+ ++ L +M +P +
Sbjct: 441 CKSPKAARA--MFDLIPPK---DRSVVTWTVLIGGNAQHGEANEALELFSQM-LQPDNFV 494
Query: 386 PCNPDIAEHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSE 436
N A L L G+ +H+++ + S + ++ L+ +YS+
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 546
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 40/175 (22%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELC 56
+LQ + P+ T++ AL+ C +L L G Q+HA+++ C +++
Sbjct: 487 MLQPDNFVMPNAFTISCALM--ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMY 544
Query: 57 AFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-----LLIDEG---- 100
+ G +F+ M +RN SWTS+M Y + G EE + +FY L+ +G
Sbjct: 545 SKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFV 604
Query: 101 -VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G + + D+ + E AC ++D+ + GR++ A
Sbjct: 605 VVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC----MVDLLSRAGRLDEA 655
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 178/657 (27%), Positives = 279/657 (42%), Gaps = 184/657 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD V+ + C + G QVH + + G+ F+G
Sbjct: 229 PD--AVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE+M ++V SW +M+ Y+ +G +++ + LF ++++ ++ +V
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF------------EKIREEKIELNVVT 334
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------SLLKHGKEIHP 172
+ I + LD+F + M + E +L L HGKE H
Sbjct: 335 WSAVIAGYAQRGLGFEALDVFRQ---MRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHC 391
Query: 173 HHLK------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAG 224
H +K ++D DL+V N+L+D Y+KC+ K A F I K + +V+W ++ G
Sbjct: 392 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGG 451
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGK 282
A Q+G+ ALE FS+M+Q D + PN ++S L ACA++ + G+
Sbjct: 452 NA------------QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 499
Query: 283 EIHGYVLRHHIQL---------------STGVGIALISIQGLGTGSFV-WNSLIDMYGRC 326
+IH YVLR+ + S V A + + + V W SL+ YG
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 559
Query: 327 G----------AIQK-----------------------NEGWRYFEMMKKEYNMEPAMEQ 353
G +QK ++G YF M K++ + P E
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEH 619
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y CMVDLL+RAG+ D+ + ++ MP +P+ A C N ++ E+AA L ELE
Sbjct: 620 YACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELE 679
Query: 404 PLSSGK-------------------------------------------VHSFIAGDTSH 420
+ G +F AGD SH
Sbjct: 680 SGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSH 739
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+ +I + L L IK +GY+ K HSEKLALA+G+++T+P
Sbjct: 740 PMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAP 799
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+P+R+ KNLR CGDCHS Y+S + E + D+ RFHHF +G+CSC YW
Sbjct: 800 GAPIRITKNLRACGDCHSAFTYISIIIEHEII----VRDSSRFHHFKNGSCSCRGYW 852
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 120/532 (22%), Positives = 212/532 (39%), Gaps = 122/532 (22%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------- 53
L L + + T + +F +C L + EL +H L+V G+
Sbjct: 15 LFLTTFFFSTASSTTDLTSTLFHQCKSLASAEL---IHQQLLVQGLPHDPTHIISMYLTF 71
Query: 54 -ELCAFLGMFEKM--PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
L + ++ VF W ++ LG+ E+++ L+ + G
Sbjct: 72 NSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPF 131
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD 157
V KAC E+ R G V+ + + FE N V ++ M+ +CG E A F+ E+
Sbjct: 132 VLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERG 191
Query: 158 FSNL-------------------------------------SLLK------------HGK 168
+L SL+ GK
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 251
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY--- 225
++H + L+ E D+ V N+++D YAKC ++ A+ F ++K K +VSWNAM+ GY
Sbjct: 252 QVHGYALRSGLFE-DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310
Query: 226 -----ALGGF---REE------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
ALG F REE I G+ Q G G AL+ F +M +PN ++L
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+L+ CA GKE H + ++ + L G V N+LIDMY +
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDE---------NDPGDDLMVINALIDMYSK 421
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
C + + F+++ + + ++ + ++ A+ G+ ++ L +M +P +
Sbjct: 422 CKSPKAARA--MFDLIPPK---DRSVVTWTVLIGGNAQHGEANEALELFSQM-LQPDNFV 475
Query: 386 PCNPDIAEHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSE 436
N A L L G+ +H+++ + S + ++ L+ +YS+
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSK 527
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 40/175 (22%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELC 56
+LQ + P+ T++ AL+ C +L L G Q+HA+++ C +++
Sbjct: 468 MLQPDNFVMPNAFTISCALM--ACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMY 525
Query: 57 AFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL-----LIDEG---- 100
+ G +F+ M +RN SWTS+M Y + G EE + +FY L+ +G
Sbjct: 526 SKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFV 585
Query: 101 -VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G + + D+ + E AC ++D+ + GR++ A
Sbjct: 586 VVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYAC----MVDLLSRAGRLDEA 636
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 171/656 (26%), Positives = 286/656 (43%), Gaps = 177/656 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERN 69
+F+ C +L+ ++G Q+H V G+++ AF+ +F++M +++
Sbjct: 122 LFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD 181
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
V + ++++ Y G EE+V + SE++ + ++ + +
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRIL------------SEMESSGIEANIVSWNGILSGFNR 229
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + + MF K + + + +L G+ IH + +K+ L+ D
Sbjct: 230 SGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLK-DKC 288
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-----------FREE- 233
V ++++D Y K ++ F++ + NA + G + G F+E+
Sbjct: 289 VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQT 348
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I G Q G ALE F M ++PN +++ +L AC + G+
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGR 408
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLID---MYG 324
HG+ +R H+ + VG ALI + + T + V WNSL++ M+G
Sbjct: 409 STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHG 468
Query: 325 R-----------------------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQY 354
+ CG + +EGW+YF+MM +EY ++P +E Y
Sbjct: 469 KAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHY 528
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMV+LL RAG+ + + +K+MPFEP S C N D+AE AA LF LEP
Sbjct: 529 SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
+ G +V++ +AGD SH
Sbjct: 589 ENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHP 648
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
+ +I+EK+ + E++K G+ + GHSEKLA+ FGL++T G
Sbjct: 649 QIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG 708
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+PL+VIKNLR+CGDCH+ K++S REI + D RFHHF DG CSCGD+W
Sbjct: 709 TPLQVIKNLRICGDCHAVIKFISSYAG----REIFIRDTNRFHHFKDGICSCGDFW 760
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K ++D ++ L+ Y+ A I + S+++++ YAL +
Sbjct: 43 KSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLI--YAL----TKAKL 96
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
FTQ ++ FSRM + P++ L + CA++ FK+GK+IH
Sbjct: 97 FTQ------SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIH----------- 139
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ + GL +FV S+ MY RCG
Sbjct: 140 -----CVSCVSGLDMDAFVQGSMFHMYMRCG 165
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 185/663 (27%), Positives = 270/663 (40%), Gaps = 179/663 (26%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
+ + L +PD ++ I C L G QVH I G+ F+G
Sbjct: 354 MTTRHLMSPD--VISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAK 411
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+F++M ++V SW +M+ Y+ G E ++LF + +E + EL
Sbjct: 412 CGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENI-----EL--- 463
Query: 112 RVGKDVYDYMISIKF---EGNACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHG 167
DV + I G C V CG R + + ++ L HG
Sbjct: 464 ----DVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHG 519
Query: 168 KEIHPHHLK-------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSW 218
KE H + +K D DL V N L+D YAKC+ +VA F + K + +V+W
Sbjct: 520 KETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTW 579
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVK 276
M+ GYA Q+GD AL+ FS M + D ++PN +LS L ACA++
Sbjct: 580 TVMIGGYA------------QHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLA 627
Query: 277 GFKLGKEIHGYVLRH---HIQL------------STGVGIALISIQGLGTGSFV-WNSLI 320
+ G+++H YVLR+ + L S V A I + + V W SL+
Sbjct: 628 ALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLM 687
Query: 321 DMYGRCGAIQK---------------------------------NEGWRYFEMMKKEYNM 347
YG G + + G +F M K++ +
Sbjct: 688 TGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGV 747
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
+P E Y CMVDL RAG+ + + + +MP EP+ C N ++ E AA
Sbjct: 748 DPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAAN 807
Query: 398 HLFELEPLSSGK-------------------------------------------VHSFI 414
L ELE + G V +F
Sbjct: 808 RLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFY 867
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
GD SH +I E L L IK IGY+ + HSEKLALA+G
Sbjct: 868 VGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYG 927
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
+++ P +P+R+ KNLR+CGDCHS Y+SK E EII+ D+ RFHHF +G+CSC
Sbjct: 928 ILTLHPRAPIRITKNLRICGDCHSAITYISKII----EHEIILRDSSRFHHFKNGSCSCK 983
Query: 521 DYW 523
YW
Sbjct: 984 GYW 986
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 185/712 (25%), Positives = 283/712 (39%), Gaps = 216/712 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL----- 59
L + M + T T + Q C K+ L Q+H ++ G V LC L
Sbjct: 221 LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 280
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+ M RN SW SM+ Y LG+ + +LFY EL+
Sbjct: 281 KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY------------ELES 328
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----RMEMASGEFEEKDFSNLSLLKH 166
+ D+ + + K VL++ + + +S + S L L
Sbjct: 329 SDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNM 388
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GKE H + L ++ + D+ V SL+D Y K L A F +K +++ +WN++++GY+
Sbjct: 389 GKETHGYVL-RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYS 447
Query: 227 LGGFREE-----------------------ITGFTQYGDGETA----------------- 246
G E+ I+G+ +G G+ A
Sbjct: 448 FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVV 507
Query: 247 ------------------LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
L+FF++M Q + PN+ S++ +L ACA + + GKEIH
Sbjct: 508 SWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLS 567
Query: 289 LRH------------------------------HIQLST--------------GVGIALI 304
+R+ IQ T G+G I
Sbjct: 568 IRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAI 627
Query: 305 SI------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
S+ G+G + + +L+ G I EGW+YF+ M +Y + P +E YCCMV
Sbjct: 628 SVFNEMQKVGVGPDAITFTALLSACKNSGLI--GEGWKYFDSMITDYRIVPRLEHYCCMV 685
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLL RAG D+ + + MP +P + C N AE AA++LF+LEP +S
Sbjct: 686 DLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSA 745
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
+VH F + + H K
Sbjct: 746 NYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGK 805
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I +L +L SE+KK+GY+ K+ H+EKLA+ +GLI G P+R
Sbjct: 806 IYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIR 865
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VIKN R+C DCHS KY+S + RE+ + D RFHHF +G CSC D+W
Sbjct: 866 VIKNTRICSDCHSAAKYISLV----KARELFLRDGVRFHHFREGKCSCNDFW 913
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 160/389 (41%), Gaps = 85/389 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLG-------------MFEKM 65
Y++ + C ++ ++ LG+++H LI G +L CA + +F +M
Sbjct: 135 VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEM 194
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDEG----VYKACSELKDHRVGK 115
P W + + ++ V LF +L + V +AC ++ K
Sbjct: 195 PNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAK 254
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++ Y+ + + + P++ M+ K G++E+A F+ + N S
Sbjct: 255 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW----------- 303
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFR 231
NS++ YA +L A F +++ + +V+WN +L+G+ L G++
Sbjct: 304 ------------NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 351
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
EE+ L RM +PN+ S++ VL A +++ +GKE HGYVLR+
Sbjct: 352 EEV------------LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 399
Query: 292 HIQLSTGVGIALI----------SIQGL-----GTGSFVWNSLIDMYGRCGAIQKNEGWR 336
VG +LI S Q + F WNSL+ Y G + + R
Sbjct: 400 GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE--DALR 457
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
M+KE ++P + + M+ A G
Sbjct: 458 LLNQMEKE-GIKPDLVTWNGMISGYAMWG 485
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 172/623 (27%), Positives = 257/623 (41%), Gaps = 186/623 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
TY I + C L +LG Q+H ++ G + + L +F ++
Sbjct: 440 TYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL 499
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
E +V SWT+M+ Y + E +NLF E++D + D + +I
Sbjct: 500 KENDVVSWTAMIAGYTQHDKFTEALNLF------------KEMQDQGIKSDNIGFASAI- 546
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC LD G++IH DL
Sbjct: 547 ---SACAGIQALD---------------------------QGRQIHAQSCLSG-YSDDLS 575
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+ YA+C ++ A+ F +I K VSWN++++G+A G+ EE
Sbjct: 576 IGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEE------------ 623
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F++M + ++ N+ + ++A A + ++GK+IHG + + T V ALI+
Sbjct: 624 ALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALIT 683
Query: 306 IQG-LGT-GSFVWNSLIDMYGR--CG--AIQ----------------------------- 330
+ GT WNS+I Y + CG A++
Sbjct: 684 LYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGL 743
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------ 384
+EG YF M + +N+ P E Y C+VDLL R+G F+++MP +P +
Sbjct: 744 VDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLL 803
Query: 385 EPCNP----DIAEHAARHLFELEPLSSG-------------------------------- 408
CN DI E AA HL ELEP S
Sbjct: 804 SACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKK 863
Query: 409 -----------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG------- 450
VH+F AGD +H I E L L + GY +P C
Sbjct: 864 EPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGY---VPRCNSLLSDAE 920
Query: 451 ----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSE+LA+AFGL+S + +PL V KNLR+C DCH+ K+VSK +R
Sbjct: 921 IRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKIT----DRV 976
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
II+ D+YRFHHF G+CSC DYW
Sbjct: 977 IIVRDSYRFHHFKVGSCSCKDYW 999
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 58/244 (23%)
Query: 145 RMEMASGEFEEKDFS--------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
RM + EF+E+ F+ N + ++IH + ES + N L+D Y K
Sbjct: 153 RMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSG-FESSTFICNPLIDLYFK 211
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
+L A F +K + VSW AM++G + G+ EE A+ F ++
Sbjct: 212 NGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEE------------AMLLFCQI--- 256
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
VL+AC +V+ F+ GK++HG VL+ QG + ++V
Sbjct: 257 -----------VLSACTKVEFFEFGKQLHGLVLK----------------QGFSSETYVC 289
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
N+L+ +Y R G + E + F M + + Y ++ LA+ G + L KK
Sbjct: 290 NALVTLYSRSGNLSSAE--QIFHCMSQRDRVS-----YNSLISGLAQQGYINRALALFKK 342
Query: 377 MPFE 380
M +
Sbjct: 343 MNLD 346
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 142/352 (40%), Gaps = 75/352 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
T+ + + C + G+++ + G CA + +F++MP R++ W + +
Sbjct: 83 TFLWLLEGCLNSRSFYDGLKLIDFYLAFGDLNCA-VNVFDEMPIRSLSCWNRIFNTFIAE 141
Query: 84 GYYEEIVNLFYLLI------DEGVY----KACS-ELKDHRVGKDVYDYMISIKFEGNACV 132
+ LF ++ DE ++ + CS R + ++ I+ FE + +
Sbjct: 142 RLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFI 201
Query: 133 KRPVLDMFIKCGRMEMASGEFEE---KD-------FSNLS-------------------- 162
P++D++ K G + A FE +D S LS
Sbjct: 202 CNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSAC 261
Query: 163 ----LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ GK++H LK+ S+ V N+L+ Y++ L A F + Q+ VS+
Sbjct: 262 TKVEFFEFGKQLHGLVLKQG-FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSY 320
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N++ I+G Q G AL F +M +P+ ++++ +L+ACA V
Sbjct: 321 NSL------------ISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGAL 368
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GK+ H Y ++ G+ + V SL+D+Y +C I+
Sbjct: 369 PNGKQFHSYAIK----------------AGMTSDIVVEGSLLDLYVKCSDIK 404
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 80/401 (19%), Positives = 145/401 (36%), Gaps = 121/401 (30%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA I G E F+ +FE + R+ SW +M+ + G
Sbjct: 185 QIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNG 244
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144
Y EE + LF + V AC++++ GK ++ ++ F V ++ ++ + G
Sbjct: 245 YEEEAMLLFCQI----VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSG 300
Query: 145 RMEMASGEF---EEKD-----------------------FSNLSL--------------- 163
+ A F ++D F ++L
Sbjct: 301 NLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLS 360
Query: 164 -------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
L +GK+ H + +K + SD++V SL+D Y KC +K AH
Sbjct: 361 ACASVGALPNGKQFHSYAIKAG-MTSDIVVEGSLLDLYVKCSDIKTAH------------ 407
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
E + Q + + + F++M + PN + +L C +
Sbjct: 408 ---------------EFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
LG++IH VL+ Q + +V + LIDMY + G + + +
Sbjct: 453 ATDLGEQIHTQVLKTGFQFNV----------------YVSSVLIDMYAKHGKL--DHALK 494
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
F +K E + + M+ + +F + LN K+M
Sbjct: 495 IFRRLK-----ENDVVSWTAMIAGYTQHDKFTEALNLFKEM 530
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 185/698 (26%), Positives = 280/698 (40%), Gaps = 211/698 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCAFLG--- 60
PD T + C + ++++GI++H + G+ C +L
Sbjct: 132 PD--IATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL-------IDE----GVYKACSEL 108
+F+K +N SW +M+G GY E NLF + ++E + AC E+
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEI 249
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSN----- 160
R K+++ Y I F+ + V + + KCG + A F E K ++
Sbjct: 250 SQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI 309
Query: 161 ----------------------------------------LSLLKHGKEIHPHHLKKDDL 180
L L++GKE+H L+ L
Sbjct: 310 GGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHG-L 368
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E D + SL+ Y C A F +++K VSWNAM++GY+ G E+
Sbjct: 369 EIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPED------- 421
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F +++ QP+ I++ VL AC+Q +LGKE H Y L+ + V
Sbjct: 422 -----ALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVA 476
Query: 301 IALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQKN------------- 332
+ I + GL WN++I YG G +++
Sbjct: 477 CSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQM 536
Query: 333 --------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG +YF M+ + +EP +E Y C++D+L RAG+ DD L
Sbjct: 537 PDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALR 596
Query: 373 FMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLS---------------- 406
+ +MP +P S C +I + A L ELEP +
Sbjct: 597 LVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGR 656
Query: 407 ---------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
GKVHSF+AGD ++S +L ++ K
Sbjct: 657 WDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCK 716
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
IGY A GHSEKLA+ FGL++T+ G+ LR+ KNLR+C DCH+
Sbjct: 717 IGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNA 776
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+K++S+ REII+ DN RFHHF DG CSCGDYW
Sbjct: 777 SKFMSEVTG----REIIIRDNKRFHHFKDGLCSCGDYW 810
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/398 (22%), Positives = 163/398 (40%), Gaps = 107/398 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C + LG +H +I G+ L F+G +F M
Sbjct: 33 TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI--DEG----------VYKACSELKDHRV 113
P RN+ SW S++ ++ G+ ++ ++ ++ +EG V C+ D ++
Sbjct: 93 PVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQM 152
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------------- 160
G ++ + + + V ++DM+ KCG + A F++ + N
Sbjct: 153 GIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCT 212
Query: 161 ------------------------------------LSLLKHGKEIHPHHLKKDDLESDL 184
+S L+ KE+H + ++ + D
Sbjct: 213 KGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRH-GFQYDE 271
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
LV N + YAKC L A F ++ K + SWNA++ G A Q GD
Sbjct: 272 LVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCA------------QNGDPR 319
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL + +M + + P+ ++ +L A A +K + GKE+HG+VLRH +++ + +GI+L+
Sbjct: 320 KALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLL 379
Query: 305 SI--------------QGLGTGSFV-WNSLIDMYGRCG 327
S+ G+ S V WN++I Y + G
Sbjct: 380 SLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNG 417
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 49/254 (19%)
Query: 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVN 187
+DMF+K + EF +F+ ++K G+ IH +K L D+ V
Sbjct: 15 IDMFVKL----ITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMG-LLLDVFVG 69
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-ITGFTQYGDGETA 246
N+L+ Y K ++ A F + ++LVSWN++++G++ GF ++ + GE
Sbjct: 70 NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L P+ +L VL CA+ ++G IHG ++
Sbjct: 130 L-----------LPDIATLVTVLPVCAREVDVQMGIRIHGLAVK---------------- 162
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
GL V NSL+DMY +CG + + +M+ + N + A+ + M+ L G
Sbjct: 163 LGLSEDVRVNNSLVDMYSKCGYLTEA------QMLFDKNNRKNAV-SWNTMIGGLCTKGY 215
Query: 367 FDDTLNFMKKMPFE 380
+ N ++M +
Sbjct: 216 IFEAFNLFREMQMQ 229
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 184/660 (27%), Positives = 280/660 (42%), Gaps = 199/660 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
T P+E T+ IF+ C K+ G QVHAH++ G+E AF+
Sbjct: 124 TEPNE--YTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVN 181
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F+K R+ S+T+++ Y G+ +E LF D +DV
Sbjct: 182 ARLVFDKSSMRDAVSFTALITGYASKGFLDEARELF----------------DEIPVRDV 225
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLL--------K 165
+ ++ + + GR+E A FEE K N+S + +
Sbjct: 226 VSW-------------NAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQ 272
Query: 166 HGKEIHPHHLKKDDLE-----SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
G + + + +E S++ + N L+D Y KC L+ A F KI+ K++VSWN
Sbjct: 273 SGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNV 332
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ GY T + Y + AL F RM+Q+++ PN ++ +L ACA + L
Sbjct: 333 MIGGY---------THMSCYKE---ALGLFRRMMQSNIDPNDVTFLSILPACANLGALDL 380
Query: 281 GKEIHGYVLRHHIQLSTGVGI--ALISIQG--------------LGTGSF-VWNSLIDMY 323
GK +H YV ++ + V + +LI + + T S WN++I +
Sbjct: 381 GKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGF 440
Query: 324 GRCG---------AIQKNEGW------------------------RYFEMMKKEYNMEPA 350
G + +EG+ RYF M ++Y + P
Sbjct: 441 AMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPK 500
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCN----------PDIAEHAARHLF 400
+ Y CM+DL RAG FD+ +K M +P A C+ ++AE A+HLF
Sbjct: 501 LPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLF 560
Query: 401 ELEP-------------LSSGK------------------------------VHSFIAGD 417
ELEP +G+ VH F+ GD
Sbjct: 561 ELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGD 620
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIS 463
H ++I + L + ++K G++ K HSEKLA+AFGLIS
Sbjct: 621 KVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLIS 680
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T PG+ +R++KNLR+CG+CHS TK +SK REII D RFHHF DG+CSC DYW
Sbjct: 681 TKPGTTIRIMKNLRVCGNCHSATKLISKI----FNREIIARDRNRFHHFKDGSCSCKDYW 736
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHL 215
SN L+ K+IH + K L + + L++F A + L A F I+ +
Sbjct: 35 LSNCKTLQTLKQIHSQ-IIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNH 93
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V WN M I G + ALE++ MI + +PN + + +C ++
Sbjct: 94 VIWNHM------------IRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKI 141
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+G GK++H +VL+ GL +FV SLI+MY + G +
Sbjct: 142 RGAHEGKQVHAHVLK----------------LGLEHNAFVHTSLINMYAQNGEL 179
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 167/661 (25%), Positives = 273/661 (41%), Gaps = 188/661 (28%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVEL------ 55
+QS D PD+ T T L C N G Q+HAHLI + EL
Sbjct: 469 MQSEDGIQPDQFTFTTLLTL--CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSE 526
Query: 56 CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------- 101
C L +F +M ERN +SW SM+ Y G +E + LF + G+
Sbjct: 527 CGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSM 586
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
+C L D + G++++++++ E ++ ++DM+ KCG M+ A +++
Sbjct: 587 LSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQT----- 641
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
++ D+++NN ++ + A F +++Q++ WN++
Sbjct: 642 ------------------IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSI 683
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
LAGYA G ++E + F M+++D++ + +++ ++ C+ + + G
Sbjct: 684 LAGYANKGLKKE------------SFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHG 731
Query: 282 KEIHGYVLRH-HIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGR 325
++H +++ + S + AL+ + G WN++I Y +
Sbjct: 732 DQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 791
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G ++ EG R F M+++YN+E E
Sbjct: 792 HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 851
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG+ +D F++KMP EP + C + D+ AA+ LFEL
Sbjct: 852 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
+P + G ++ F AG +
Sbjct: 912 DPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKT 971
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIP-----------------ACGHSEKLALAFGLI 462
H +I L L + K +GY+ HSE+LAL+ GLI
Sbjct: 972 HPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLI 1031
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
S S +RV KNLR+CGDCH+ TK++SK R II D RFHHF +G CSCGDY
Sbjct: 1032 SLPKKSTIRVFKNLRICGDCHTATKFISKITG----RRIIARDTNRFHHFENGKCSCGDY 1087
Query: 523 W 523
W
Sbjct: 1088 W 1088
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 158/359 (44%), Gaps = 94/359 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD T+A + C L + + G QVH+ LI CG + F+G
Sbjct: 274 PD--NFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++M ERN +W S++ G++ + + LF L + E YK
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF-LRMQESGYK---------------- 374
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
S +F G + MAS + L+ + G+E+H H L ++
Sbjct: 375 ---SNRF---------------NLGSILMAS--------AGLADIGKGRELHGH-LVRNL 407
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L SD+++ ++L+D Y+KC ++ AH F + +++ VS+NA+LAGY Q
Sbjct: 408 LNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY------------VQ 455
Query: 240 YGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
G E ALE + M D +QP+ + + +L CA + G++IH +++R +I +
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 515
Query: 299 VGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
V L+ + + ++ WNS+I+ Y + G Q E R F+ M+
Sbjct: 516 VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQ--EALRLFKQMQ 572
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 104/513 (20%), Positives = 198/513 (38%), Gaps = 129/513 (25%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV---------------------ELCA 57
D + Y+ + Q C N+ + G +H +I G +LC
Sbjct: 68 DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+FE+MPERN+ +W +M+ Y + Y E++ L+ + G V KAC
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------ 155
++D + + ++ N V ++D + + G M+ A +E
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247
Query: 156 ---------------------------KDFSNLSLLK---------HGKEIHPHHLKKDD 179
+F+ S L+ GK++H L
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK-LIACG 306
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ D V N+L+D YAKC + F ++ +++ V+WN++++ A Q
Sbjct: 307 FKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA------------Q 354
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+G AL F RM ++ + N +L +L A A + G+E+HG+++R+ + +
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
G AL+ DMY +CG ++ E + F + +E Y ++
Sbjct: 415 GSALV----------------DMYSKCGMVE--EAHQVFRSL-----LERNEVSYNALLA 451
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFEL-----EPLSSGKVHS-F 413
+ G+ ++ L M S + PD + L L ++H+
Sbjct: 452 GYVQEGKAEEALELYHDM----QSEDGIQPD--QFTFTTLLTLCANQRNDNQGRQIHAHL 505
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
I + + +++ + +L+ +YSE ++ Y K I
Sbjct: 506 IRANITKNII--VETELVHMYSECGRLNYAKEI 536
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 186/667 (27%), Positives = 272/667 (40%), Gaps = 192/667 (28%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL---------------- 59
TN ++ I C L L ++H++ I G AF+
Sbjct: 253 TNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMND 312
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F M ++V SW +M+ Y G + LF ++ + DV
Sbjct: 313 AVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELF------------ENMRKENIPLDV 360
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK---------HGK 168
+ I + LD F +M E + +SLL G
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAF-----QQMILDGSEPNSVTIISLLSACASLGALSQGM 415
Query: 169 EIHPHHLKKDDLE-----------SDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHL 215
EIH + LKK L DL+V N+L+D Y+KCR K A F I +++++
Sbjct: 416 EIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNV 475
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACA 273
V+W M+ GYA QYGD AL+ FS MI + PN ++S +L ACA
Sbjct: 476 VTWTVMIGGYA------------QYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACA 523
Query: 274 QVKGFKLGKEIHGYVLRHH-----IQLSTGVGIALISIQG-LGTGSFV-----------W 316
+ ++GK+IH YV RHH + I + S G + T V W
Sbjct: 524 HLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSW 583
Query: 317 NSLIDMYGRCG----------AIQK-----------------------NEGWRYFEMMKK 343
S++ YG G +QK ++G YF++M++
Sbjct: 584 TSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRR 643
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
+Y++ + E Y C++DLLAR G+ D +++MP EPS+ C N ++AE
Sbjct: 644 DYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAE 703
Query: 394 HAARHLFELEPLSSGK-------------------------------------------V 410
+A L ++ + G
Sbjct: 704 YALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGT 763
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
SF GD SH L +I L RL IK +GY+ K HSEKLA
Sbjct: 764 ASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLA 823
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
LA+GL++TSPG P+R+ KNLR+CGDCHS Y+SK + EII+ D+ RFHHF +G+
Sbjct: 824 LAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIV----DHEIIVRDSSRFHHFKNGS 879
Query: 517 CSCGDYW 523
CSCG YW
Sbjct: 880 CSCGGYW 886
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 173/408 (42%), Gaps = 79/408 (19%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
T PD T+ YAL + C +L + G +H LI C F E NVF +
Sbjct: 145 TKPDHFTLPYAL--KACGELPSYCCGRALHG-LICCN----GF--------ESNVFVCNA 189
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
++ MY+ G E+ +F + +G+ S ++ +++ +G+ R
Sbjct: 190 LVAMYSRCGSLEDASLVFDEITRKGIDDVIS-----------WNSIVAAHVKGSN--PRT 236
Query: 136 VLDMFIKCGRMEMASGEFEEKDF----------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
L++F + + E D ++L L KEIH + ++ +D
Sbjct: 237 ALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTF-ADAF 295
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-----------FREE- 233
V N+L+D YAKC + A F+ ++ K +VSWNAM+ GY G R+E
Sbjct: 296 VCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKEN 355
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I G+ Q G + AL+ F +MI +PN++++ +L+ACA + G
Sbjct: 356 IPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGM 415
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
EIH Y L+ + + L V+N+LIDMY +C R F+ +
Sbjct: 416 EIHAYSLKKCLLSLDNDFGGDGDGEDL----MVYNALIDMYSKC---------RSFKAAR 462
Query: 343 KEYNMEPAMEQ----YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
++ P E+ + M+ A+ G +D L +M +P + P
Sbjct: 463 SIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAP 510
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 28/137 (20%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y C K A ++ V WN ++ RE I + G + A+ RM
Sbjct: 93 YLACGATKDALSVLERVTPSPAVWWNLLV--------REHI----KEGHLDRAIGVSCRM 140
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++ +P+ +L L AC ++ + G+ +HG LI G +
Sbjct: 141 LRAGTKPDHFTLPYALKACGELPSYCCGRALHG----------------LICCNGFESNV 184
Query: 314 FVWNSLIDMYGRCGAIQ 330
FV N+L+ MY RCG+++
Sbjct: 185 FVCNALVAMYSRCGSLE 201
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 273/637 (42%), Gaps = 191/637 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++M ER+V SW S++ Y G E+ +++F ++ G V+ C++ +
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
+G+ V+ + F +LDM+ KCG ++ A
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Query: 150 ------SGE----FEEKDFSNLS-----------------LLKHGKEIHPHHLKKDDLES 182
+GE FEE + +S LL GK +H +K++DL
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH-EWIKENDLGF 430
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V+N+LMD YAKC ++ A FS+++ K ++SWN ++ GY+ + E
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------- 481
Query: 243 GETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F+ +++ P+ +++ VL ACA + F G+EIHGY++R+ V
Sbjct: 482 ---ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 302 ALISI--------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQK 331
+L+ + + + V W +I YG R I+
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 332 NE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+E GWR+F +M+ E +EP +E Y C+VD+LAR G F
Sbjct: 599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG--------------- 408
++ MP P + A C + +AE A +FELEP ++G
Sbjct: 659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+V+ F+AGD+S+ I L ++ + + +
Sbjct: 719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY K CGHSEKLA+A G+IS+ G +RV KNLR+CGDCH
Sbjct: 779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK + REI++ D+ RFH F DG CSC +W
Sbjct: 839 KFMSKLTR----REIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 43/248 (17%)
Query: 146 MEMASGEFE--EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+EM S F K FS+L + G+++H LK E + V NSL+ FY K + + A
Sbjct: 191 VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSA 249
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F ++ ++ ++SWN+++ GY G E L F +M+ + ++ +
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGL------------AEKGLSVFVQMLVSGIEIDLA 297
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
++ V A CA + LG+ +H S GV N+L+DMY
Sbjct: 298 TIVSVFAGCADSRLISLGRAVH----------SIGVKAC------FSREDRFCNTLLDMY 341
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
+CG + + F M + ++ Y M+ AR G + + FE
Sbjct: 342 SKCGDLDSAKA--VFREMS-----DRSVVSYTSMIAGYAREGLAGEAVKL-----FEEME 389
Query: 384 AEPCNPDI 391
E +PD+
Sbjct: 390 EEGISPDV 397
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GKE+ + ++ + D + + L Y C LK A F ++K + + WN ++
Sbjct: 110 LKDGKEV-DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN 168
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
A + GD ++ F +M+ + ++ ++ + S V + + ++ G++
Sbjct: 169 ELA------------KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
Query: 284 IHGYVLRHHIQLSTGVGIALISI----QGLGTGSFV-----------WNSLIDMYGRCGA 328
+HG++L+ VG +L++ Q + + V WNS+I+ Y G
Sbjct: 217 LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276
Query: 329 IQK 331
+K
Sbjct: 277 AEK 279
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
++ F + G+ E A++ + D+ P T L VL CA K K GKE+ ++ +
Sbjct: 67 QLRRFCESGNLENAVKLLCVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
+ + +G L SL MY CG ++ E R F+ E +E A+
Sbjct: 125 FVIDSNLGSKL--------------SL--MYTNCGDLK--EASRVFD----EVKIEKAL- 161
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKM 377
+ +++ LA++G F ++ KKM
Sbjct: 162 FWNILMNELAKSGDFSGSIGLFKKM 186
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 188/702 (26%), Positives = 290/702 (41%), Gaps = 221/702 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM----------- 61
PD T+ + + C L +L G +VH H+I G E + A + M
Sbjct: 193 PD--VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYE-----EIVNLFYLLID----------EGVYKA 104
F++MP R+ SW +M+ GY+E E + LF+++ + V A
Sbjct: 251 LVFDRMPRRDRISWNAMIS-----GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEKDF--- 158
C L D R+G++V+ Y+I F V ++ M G EM + E KD
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365
Query: 159 ------------------------------------------SNLSLLKHGKEIHPHHLK 176
+ L LL G +H
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLH-EFAD 424
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ L S ++V NSL+D Y+KCR + A F +I K+++SW +++ G L
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL--------- 475
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Y E AL FF +MI + ++PN+++L VL+ACA++ GKEIH + LR +
Sbjct: 476 --NYRSFE-ALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531
Query: 297 TGVGIALISI--------------QGLGTGSFVWNSLIDMYGRCG----AIQ-------- 330
+ AL+ + WN L+ Y + G A++
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIES 591
Query: 331 ---------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+G YFE M+ ++++ P ++ Y +VDLL RAG+ +D
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLED 651
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------- 406
F+KKMP +P A C N ++ E AA+H+FE++ S
Sbjct: 652 AYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYAD 711
Query: 407 ------------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+G+VH+F+ GD H + +I+ L Y +
Sbjct: 712 SGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEK 771
Query: 437 IKKIGYM-------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
++ G K CGHSE+LA+AFGLI+T PG+P+ V KNL MC +CH
Sbjct: 772 MEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCH 831
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD--YW 523
+ K++SK + R I + D +FHHF DG CSCGD YW
Sbjct: 832 NTVKFISKVVR----RGISVRDTEQFHHFKDGVCSCGDEGYW 869
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 87/329 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F KM ER++FSW ++G Y GY++E +NL++ ++ G V + C L D
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------RM---------EMASG 151
G++V+ ++I FE + V ++ M++KCG RM M SG
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270
Query: 152 EFE-------------------EKDFSNLSLL----------KHGKEIHPHHLKKDDLES 182
FE + D ++ + + G+E+H + +K +
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT-GFVA 329
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ VNNSL+ ++ A FSK++ K LVSW AM++GY G E+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK--------- 380
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+E ++ M + P+ I+++ VL+ACA + G +H + R
Sbjct: 381 ---AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR------------ 425
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
GL + V NSLIDMY +C I K
Sbjct: 426 ----TGLTSYVIVANSLIDMYSKCRCIDK 450
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 36/206 (17%)
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL-------KHGKEIHPHHLKKDDLESD 183
C+K + I M+ EE+ + L L G +H + + K
Sbjct: 70 CLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSY-VSKTVTRLG 128
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + N+L+ + + L A F K+ ++ L SWN ++ GYA G+ +E
Sbjct: 129 VRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDE---------- 178
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL + RM+ ++P+ + VL C + G+E+H +V+R+
Sbjct: 179 --ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY------------ 224
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAI 329
G + V N+LI MY +CG I
Sbjct: 225 ----GFESDVDVVNALITMYVKCGDI 246
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 176/629 (27%), Positives = 258/629 (41%), Gaps = 174/629 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP-ERNVFSWTSM 76
PD T + + C L +L LG +H GM KM +VF ++
Sbjct: 206 PD--NFTLPCVIKACAGLLDLGLGQIIH--------------GMATKMDLVSDVFVGNAL 249
Query: 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL-------KDHRVGKDVYDYMISIKFEGN 129
+ MY G EE V + L+D + + L D R D+Y M + +
Sbjct: 250 IAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 309
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189
+ + + C RM+ L +G+EIH L+ + L D + S
Sbjct: 310 WFT---IGSLLLACSRMKS---------------LHYGEEIHGFALR-NGLAVDPFIGIS 350
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L+ Y C A F ++ + LVSWN M+AGY+ G +E A+
Sbjct: 351 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDE------------AINL 398
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-- 307
F +M+ +QP I++ V AC+Q+ +LGKE+H + L+ H+ V ++I +
Sbjct: 399 FRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK 458
Query: 308 ----GLGTGSF---------VWNSLIDMYGRCGAIQK----------------------- 331
GL F WN +I YG G ++
Sbjct: 459 GGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 518
Query: 332 ----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+G YF M +N+EP +E Y C+VD+L RAG+ DD L +++MP +P
Sbjct: 519 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDP 578
Query: 382 SSA------EPC----NPDIAEHAARHLFELEPLS------------------------- 406
S C N + E A L ELEP
Sbjct: 579 DSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRG 638
Query: 407 ------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA 448
GKVH+F+ GD + ++ E RL +I IGY +
Sbjct: 639 RMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGS 698
Query: 449 C--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
GHSEKLA++FGL++T+ G P+RV KNLR+CGDCH+ K++SK
Sbjct: 699 VLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVN 758
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
R+I++ DN RFHHF DG CSCGDYW
Sbjct: 759 ----RDIVVRDNKRFHHFRDGICSCGDYW 783
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 30/176 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H +D ++N ++ Y+ C + F K+++K+L WNA+++ Y
Sbjct: 124 GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 183
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
R E+ E A+ FS +I T+ +P+ +L V+ ACA + LG+ IH
Sbjct: 184 ----RNELF--------EDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 231
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G + L + FV N+LI MYG+CG +++ R F++M
Sbjct: 232 GMATK----------------MDLVSDVFVGNALIAMYGKCGLVEEAVK-RVFDLM 270
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 181/696 (26%), Positives = 288/696 (41%), Gaps = 219/696 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-------------CAF----LGMFEKMP 66
T + Q C +L L G ++HA L+ CG E C + L +F ++
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIG 326
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+++ SW SM+ Y Y E ++ F ++ G + A L G++
Sbjct: 327 DKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF--------------- 158
V+ Y + + + + + ++DM+IKC +E ++ F+ KD
Sbjct: 387 VHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSR 446
Query: 159 ------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
S L + K++H + ++ L DL++ N
Sbjct: 447 YSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLL--DLILKN 504
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
++D Y +C + A F + +K +V+W +M+ +A G E A+
Sbjct: 505 RIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHE------------AVA 552
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-Q 307
F +M+ +QP++++L G+L A A + GKEIHG+++R + V +L+ +
Sbjct: 553 LFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYS 612
Query: 308 GLGTGSF--------------VWNSLIDMYGRCGAIQK---------------------- 331
G G+ ++ +W ++I+ G G ++
Sbjct: 613 GCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLA 672
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+EG Y +MM +Y ++P E Y C+VDLL R+GQ ++ F+K MP E
Sbjct: 673 LLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLE 732
Query: 381 PSSAEPC----------NPDIAEHAARHLFELEPLSSGK--------------------- 409
P S C N ++A A L ELEP + G
Sbjct: 733 PKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIR 792
Query: 410 ----------------------VHSFIAGDTSH---SLVH----KISEKLMRL------- 433
VH+F A D SH +H +I+EKL R
Sbjct: 793 TKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDT 852
Query: 434 ------YSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
SE +KI + R HSE+LA++FGLIST+ G+PLR+ KNLR+CGDCH TK
Sbjct: 853 SFVLHDVSEEEKIDLLHR-----HSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTK 907
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VSK EREI++ D RFHHF G CSCGD+W
Sbjct: 908 LVSKL----FEREIVVRDANRFHHFSGGTCSCGDFW 939
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/491 (20%), Positives = 186/491 (37%), Gaps = 127/491 (25%)
Query: 41 GIQVHAHLIVCGV---ELCAFLG------------------MFEKMPERNVFSWTSMMGM 79
G Q+HAH + G + FL +F+ MP R VFSW +++G
Sbjct: 74 GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133
Query: 80 YNVLGYYEEIVNLFYLLIDE--------------GVYKACSELKDHRVGKDVYDYMISIK 125
G E V ++ + V KAC D R G +V+ +
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSG 193
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFE------------------------------- 154
+ + V ++ M+ KCG ++ A FE
Sbjct: 194 LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLF 253
Query: 155 ----EKDFS--------------NLSLLKHGKEIHPHHLKKDDLESDLLVN-NSLMDFYA 195
FS L+ L HG+E+H LK ++ + N+L+ YA
Sbjct: 254 RRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLK---CGTEFNIQCNALLVMYA 310
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
+C ++ A F +I K +SWN+ML+ Y E A++FF M+Q
Sbjct: 311 RCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAE------------AIDFFGEMVQ 358
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
P+ + +L+A + G+E+H Y ++ +L + + IA
Sbjct: 359 NGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ--RLDSDLQIA------------- 403
Query: 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
N+L+DMY +C +++ + R F+ M+ + ++ + ++ A++ ++ + + +
Sbjct: 404 -NTLMDMYIKCYSVECSA--RVFDRMRIKDHV-----SWTTIIACYAQSSRYSEAIGKFR 455
Query: 376 KMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYS 435
E +P A L + L +VHS+ + L+ K +++ +Y
Sbjct: 456 TAQKEGIKVDPMMMGSILEACSGLKSISLLK--QVHSYAIRNGLLDLILK--NRIIDIYG 511
Query: 436 EIKKIGYMKRI 446
E ++ Y I
Sbjct: 512 ECGEVCYALNI 522
>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
Length = 920
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 175/643 (27%), Positives = 256/643 (39%), Gaps = 213/643 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY I + C +ELG Q+H+ I G E ++ + E +
Sbjct: 348 TYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEML 407
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGK 115
+R+V SWTSM+ Y + EE + F + D GV+ AC+ +K R G
Sbjct: 408 EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGL 467
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------------------ 157
++ + + + + +++++ +CGR E A F E D
Sbjct: 468 QIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSR 527
Query: 158 ------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+NL+ +K GK++H +K S+ V
Sbjct: 528 LYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGH-TSETEVA 586
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ Y KC ++ A FS++ ++ VSWN + IT +Q+G G AL
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTI------------ITSCSQHGRGLEAL 634
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F +M Q ++PN ++ GVLAAC+ VG+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSH------------------------VGLV----- 665
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG YF+ M Y + P + Y C+VD+L RAGQ
Sbjct: 666 ------------------------EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQL 701
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
D F+ +MP ++ C N +I E AA+HL ELEP S
Sbjct: 702 DRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAY 761
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F GD H L +I + L L
Sbjct: 762 AVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821
Query: 435 SEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ KIGY + P A HSEKLA+AFGL++ P PLRVIKNLR+C
Sbjct: 822 DRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCD 881
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+ S+ + REI++ D YRFHHF G+CSCGDYW
Sbjct: 882 DCHSWMKFTSEVTR----REIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH + + L +D L+ N L+D YAK + A F ++ + VSW AML+GYA
Sbjct: 64 EIHATSVVRG-LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA-- 120
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G G+ A +S+M T + P LS VL+AC + K F G+ IH V
Sbjct: 121 ----------QRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
+ T VG ALI++ LG GSF +N+LI + +CG
Sbjct: 171 YKQAFCSETFVGNALIALY-LGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 130/342 (38%), Gaps = 89/342 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKD 110
+F+++ R+ SW +M+ Y G +E L+ + + V AC++ K
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKL 159
Query: 111 HRVGKDVY-----DYMISIKFEGNACV------------KRPVLDMFI------------ 141
G+ ++ S F GNA + +R DM
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219
Query: 142 --KCGRMEMASGEFEEKDFSNL--------SLL---------KHGKEIHPHHLKKDDLES 182
+CG E A F+E S L SLL + GK++H + LK +
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG-MSF 278
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + SL+D Y KC ++ AH F+ + ++V WN ML Y Q D
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG------------QISD 326
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ E F +M T + PN + +L C +LG++IH +++
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKN----------- 375
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
G + +V LIDMY + + K + EM++K
Sbjct: 376 -----GFESDMYVSGVLIDMYSKYRCLDKAR--KILEMLEKR 410
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 186/702 (26%), Positives = 276/702 (39%), Gaps = 218/702 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--EL------------CAFLG--- 60
PD T + C ++E G+ VH + G+ EL C FL
Sbjct: 202 PD--VATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQ 259
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL-----------IDE----GVYKA 104
+F+K ++N+ SW SM+G Y E++ FYLL DE V
Sbjct: 260 LLFDKNDKKNIVSWNSMIGGY---AREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPV 316
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------ 158
C E + + K+++ Y + N V + + +CG + + F+ D
Sbjct: 317 CLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSW 376
Query: 159 ------------------------------------------SNLSLLKHGKEIHPHHLK 176
S + L +G+EIH L+
Sbjct: 377 NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALR 436
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ L D + SL+ Y C A F ++ + LVSWN M+AGY+ G +E
Sbjct: 437 -NGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDE--- 492
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A+ F +M+ +QP I++ V AC+Q+ +LGKE+H + L+ H+
Sbjct: 493 ---------AINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTED 543
Query: 297 TGVGIALISIQ------GLGTGSF---------VWNSLIDMYGRCGAIQK---------- 331
V ++I + GL F WN +I YG G ++
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 603
Query: 332 -----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+G YF M +N+EP +E Y C+VD+L RAG+ D
Sbjct: 604 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 663
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------ 406
D L +++MP +P S C N + E A L ELEP
Sbjct: 664 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 723
Query: 407 -------------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYS 435
GKVH+F+ GD + ++ E RL
Sbjct: 724 GSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEV 783
Query: 436 EIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+I IGY + GHSEKLA++FGL++T+ G P+RV KNLR+CGD
Sbjct: 784 KISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGD 843
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K++SK R+I++ DN RFHHF DG CSCGDYW
Sbjct: 844 CHNAAKFISKVVN----RDIVVRDNKRFHHFRDGICSCGDYW 881
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 92/343 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F+K+ +N+F W +++ Y +E+ +++F LI V KAC+ L
Sbjct: 56 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 115
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE--------------- 154
D +G+ ++ + + V ++ M+ KCG +E A FE
Sbjct: 116 DLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIIC 175
Query: 155 --------EKDFSNLSLLKHGKE-----------IHPHHLKKDDLE-------------- 181
++ F+ + G+E + P ++D+E
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGL 235
Query: 182 -SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+L+VNNSL+D Y+KCR+L A F K +K++VSWN+M+ GYA REE T Y
Sbjct: 236 NEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYA----REEDVCRTFY 291
Query: 241 GDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+M D M+ + ++ VL C + + KE+HGY RH
Sbjct: 292 --------LLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRH------- 336
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
GL + V N+ I Y RCGA+ +E R F++M
Sbjct: 337 ---------GLQSNELVANAFIAAYTRCGALCSSE--RVFDLM 368
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 159/405 (39%), Gaps = 110/405 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL--------IVCGVELCAFLG--------- 60
PD T + + C L +L LG +H + G L A G
Sbjct: 99 PD--NFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAV 156
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDE-----------GVYKACSE 107
+FE MPERN+ SW S++ ++ G+ +E N F +L+ E V C+
Sbjct: 157 KVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAG 216
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------ 161
+D G V+ + + V ++DM+ KC + A F++ D N+
Sbjct: 217 EEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSM 276
Query: 162 --------------------------------------------SLLKHGKEIHPHHLKK 177
S L+ KE+H + +
Sbjct: 277 IGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRH 336
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+S+ LV N+ + Y +C L + F + K + SWNA+L GYA
Sbjct: 337 -GLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYA----------- 384
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q D AL+ + +M + + P+ ++ +L AC+++K G+EIHG+ LR+ + +
Sbjct: 385 -QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDP 443
Query: 298 GVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG 327
+GI+L+S+ G+ S V WN +I Y + G
Sbjct: 444 FIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 488
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 47/268 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H +D ++N ++ Y+ C + F K+++K+L WNA+++ Y
Sbjct: 17 GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 76
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
R E+ E A+ FS +I T+ +P+ +L V+ ACA + LG+ IH
Sbjct: 77 ----RNELF--------EDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
G + L + FV N+LI MYG+CG ++ E + FE M
Sbjct: 125 GMATK----------------MDLVSDVFVGNALIAMYGKCGLVE--EAVKVFEHMP--- 163
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPL 405
E + + ++ + G ++ N ++M E PD+A L + P+
Sbjct: 164 --ERNLVSWNSIICGFSENGFLQESFNAFREMLV---GEESFVPDVAT-----LVTVLPV 213
Query: 406 SSGKVHSFIAGDTSHSLVHK--ISEKLM 431
+G+ G H L K ++E+LM
Sbjct: 214 CAGE-EDIEKGMAVHGLAVKLGLNEELM 240
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 182/665 (27%), Positives = 275/665 (41%), Gaps = 188/665 (28%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL---------------- 59
TN ++ I C L L ++H++ I G AF+
Sbjct: 253 TNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKD 312
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------YKACSELKD 110
+F M ++V SW +M+ Y G + LF + E + +
Sbjct: 313 AVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQ 372
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
G++ D + G+ ++ + C ++L L G E
Sbjct: 373 RGYGQEALDTFQQMILYGSEPNSVTIISLLSAC---------------ASLGALSQGMET 417
Query: 171 HPHHLKKDDLE-----------SDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVS 217
H + LKK L DL+V+N+L+D Y+KCR K A F+ I +++++V+
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVT 477
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQV 275
W M+ GYA QYGD AL+ FS MI + PN ++S +L ACA +
Sbjct: 478 WTVMIGGYA------------QYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHL 525
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIA--LISIQG----LGTGSFV-----------WNS 318
++GK+IH YV RHH S+ +A LI + + T V W S
Sbjct: 526 SSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585
Query: 319 LIDMYGRCG----------AIQK-----------------------NEGWRYFEMMKKEY 345
++ YG G +QK ++G YF++M+ +Y
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDY 645
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHA 395
+ + + Y C++DLLAR+G+ D +++MP EPS+A C N ++AE+A
Sbjct: 646 GVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYA 705
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
L ++ + G S
Sbjct: 706 LNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTAS 765
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F GD SH L +I L RL IK +GY+ K HSEKLALA
Sbjct: 766 FFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALA 825
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
+GL++TSPG P+R+ KNLR+CGDCHS Y+SK + EII+ D+ RFHHF +G+CS
Sbjct: 826 YGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIV----DHEIIVRDSSRFHHFKNGSCS 881
Query: 519 CGDYW 523
CG YW
Sbjct: 882 CGGYW 886
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 117/471 (24%), Positives = 199/471 (42%), Gaps = 84/471 (17%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
T PD T+ YAL + C +L + G H LI C F E NVF +
Sbjct: 145 TKPDHFTLPYAL--KACGELPSYRSGSAFHG-LICCN----GF--------ESNVFVCNA 189
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
++ MY+ G E+ +F + +G+ S ++ +++ +G+ R
Sbjct: 190 LVAMYSRSGSLEDASLVFDEITRKGIDDVIS-----------WNSIVAAHVKGSN--PRT 236
Query: 136 VLDMFIKCGRMEMASGEFEEKDF----------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
LD+F + + E D ++L L KEIH + ++ +D
Sbjct: 237 ALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTF-ADAF 295
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-----------FREE- 233
V N+L+D YAKC +K A F+ ++ K +VSWNAM+ GY G R+E
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN 355
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I G+ Q G G+ AL+ F +MI +PN++++ +L+ACA + G
Sbjct: 356 IPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGM 415
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
E H Y L+ + + L V N+LIDMY +C R F+ +
Sbjct: 416 ETHAYSLKKCLLSLDNDFGGDGDGEDL----VVHNALIDMYSKC---------RSFKAAR 462
Query: 343 KEYNMEPAMEQ----YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA--EHAA 396
+N P E+ + M+ A+ G +D L +M +P + P I+ A
Sbjct: 463 TIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMAC 522
Query: 397 RHLFELEPLSSGKVHSFIAGDTSH-SLVHKISEKLMRLYSEIKKIGYMKRI 446
HL L ++H+++ + S V+ ++ L+ +YS+ + + +
Sbjct: 523 AHLSSLR--MGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNV 571
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A+ RM++ +P+ +L L AC ++ ++ G HG
Sbjct: 128 GRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHG-------------- 173
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
LI G + FV N+L+ MY R G+++
Sbjct: 174 --LICCNGFESNVFVCNALVAMYSRSGSLE 201
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 266/643 (41%), Gaps = 213/643 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL-GMFEK-------------M 65
TY I + C + L+LG Q+H +I G V +C+ L M+ K +
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
E +V SWT+++ Y + E + F +++ G+ AC+ ++ G+
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGR 536
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----------------- 158
++ + + + ++ ++ +CGR++ A EFE+ D
Sbjct: 537 QIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSG 596
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+N++ +K GK+IH +K+ +SD+ V+
Sbjct: 597 YCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG-FDSDIEVS 655
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ FYAKC ++ A +F ++ +K+ VSWNAM ITG++Q+G G A+
Sbjct: 656 NALITFYAKCGSIEDARREFCEMPEKNDVSWNAM------------ITGYSQHGYGNEAV 703
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F +M Q PN ++ GVL+AC+ H+ L T +
Sbjct: 704 NLFEKMKQVGEMPNHVTFVGVLSACS------------------HVGLVT---------K 736
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GLG YFE M KE+ + P Y C+VDL++RAG
Sbjct: 737 GLG--------------------------YFESMSKEHGLVPKPAHYACVVDLISRAGFL 770
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
F+++MP EP + C N ++ E AA+HL ELEP S
Sbjct: 771 SRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMY 830
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F GD H L KI E L L
Sbjct: 831 AVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELN 890
Query: 435 SEIKKIGYM-------------KRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ +IGY ++ P HSEKLA+ FGL+S S P+ V+KNLR+C
Sbjct: 891 KKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCK 950
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VSK R II+ D YRFHHF G CSC DYW
Sbjct: 951 DCHSWIKFVSKISN----RAIIVRDAYRFHHFEGGICSCKDYW 989
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 144/346 (41%), Gaps = 101/346 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGI----QVHAHLIVCGVELCA------F 58
L M N +++A + + C + +GI Q+HA +I G+ LC+
Sbjct: 98 LFSCMIEENVSPTEISFASVLRAC---SGHRIGIRYAEQIHARIICHGL-LCSPIISNPL 153
Query: 59 LGMFEK----MPERNVF---------SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC 105
+G++ K + R VF SW +M+ ++ GY EE ++LF + G++
Sbjct: 154 IGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPT- 212
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
Y+ S G C K + D+
Sbjct: 213 -------------PYVFSSVLSG--CTKIKLFDV-------------------------- 231
Query: 166 HGKEIHPHHLK-KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G+++H K LE+ V N+L+ Y++ A FSK++ K VS+N++++G
Sbjct: 232 -GEQLHALVFKYGSSLET--YVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISG 288
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
A GF DG ALE F++M + ++P+ ++++ +L+ACA G+++
Sbjct: 289 LAQQGF----------SDG--ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQL 336
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
H YV++ G+ + V +L+D+Y C I+
Sbjct: 337 HSYVIK----------------AGISSDMIVEGALLDLYVNCSDIK 366
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 125/334 (37%), Gaps = 98/334 (29%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYK 103
+L + +FE MP R+V SW ++ + +++LF +I+E V +
Sbjct: 60 DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLR 119
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
ACS HR+G
Sbjct: 120 ACS---GHRIG------------------------------------------------- 127
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+++ ++IH + L S + ++N L+ YAK + A F + K VSW AM++
Sbjct: 128 IRYAEQIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMIS 186
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
G++ G+ EE A+ F M + P S VL+ C ++K F +G++
Sbjct: 187 GFSQNGYEEE------------AIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQ 234
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H V ++ L T +V N+L+ +Y R E + F M+
Sbjct: 235 LHALVFKYGSSLET----------------YVCNALVTLYSRMPNFVSAE--KVFSKMQS 276
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + + ++ LA+ G D L KM
Sbjct: 277 KDEV-----SFNSLISGLAQQGFSDGALELFTKM 305
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 175/635 (27%), Positives = 276/635 (43%), Gaps = 188/635 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + C L +L G Q H ++ G E F+ +F+++
Sbjct: 154 TFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 213
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
RN+ SWTSM + GY + ++ ++A K+ V + +
Sbjct: 214 SHRNIVSWTSM-----ITGYVQ----------NDDAHRALLLFKEFLVEES------GSE 252
Query: 126 FEGNACVKR-PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
+G CV ++ + C R+ S ++ HG L K E DL
Sbjct: 253 GDGEVCVDPIAMVSVLSACSRVSEKS----------ITEGVHG------FLIKRGFEGDL 296
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+LMD YAKC L V+ F + ++ ++SWN+++A YA G E
Sbjct: 297 GVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE----------- 345
Query: 245 TALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
++E F RM++ ++ N ++LS VL ACA +LGK IH V++ ++ + VG ++
Sbjct: 346 -SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSI 404
Query: 304 ISIQ------GLGTGSF---------VWNSLIDMYGRCG---------------AIQKN- 332
I + + +F W++++ YG G ++ N
Sbjct: 405 IDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNY 464
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EGW +F+ M E+++EP +E Y CMVDLL RAG + + +K
Sbjct: 465 ITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIK 524
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS---------- 407
M P C N D+ E +AR LFEL+P LS+
Sbjct: 525 GMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWED 584
Query: 408 -------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
G+VH F+ GD H KI E L +L +++++GY
Sbjct: 585 VERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGY 644
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + + HSEKLA+AFG+++T PG+ + +IKNLR+CGDCH+ K+
Sbjct: 645 VPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKF 704
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +REI++ D+ RFHHF DG CSCGDYW
Sbjct: 705 ISKIV----DREIVVRDSKRFHHFRDGLCSCGDYW 735
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 28/121 (23%)
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ + ++ SWN+++A A + GD AL FS M + ++PN + +
Sbjct: 112 VDKTNVFSWNSVIAELA------------RSGDSVEALRAFSSMRKLSLKPNRSTFPCAI 159
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+C+ + G++ H L I G FV ++L+DMY +CG +
Sbjct: 160 KSCSALLDLHSGRQAHQQAL----------------IFGFEPDLFVSSALVDMYSKCGEL 203
Query: 330 Q 330
+
Sbjct: 204 R 204
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FE 63
VT + + C + LG +H +I G+E F+G F+
Sbjct: 363 AVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFD 422
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+M E+NV SW++M+ Y + G+ +E + +FY + GV
Sbjct: 423 RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 460
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 174/646 (26%), Positives = 270/646 (41%), Gaps = 221/646 (34%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+TY+ + + C ++ G +VH H+ G E F+ +F+
Sbjct: 55 AITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFD 114
Query: 64 KMPERNVFSWTSMMGMY-NVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHR 112
+MPERNV SWT+M+ Y N L ++ + L+ EGV +AC L + R
Sbjct: 115 EMPERNVVSWTTMISAYSNKLN--DKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR 172
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF----------- 158
++ +I E + V+ ++D++ K ++ A G F+E +D
Sbjct: 173 ---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229
Query: 159 ----------------------------------SNLSLLKHGKEIHPHHLKKDDLESDL 184
+ L+LL+ G+++H H LK D DL
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFD---QDL 286
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
++NN+L+D Y KC L+ A+ FS++ +K ++SW+ M+AG A G+ +
Sbjct: 287 ILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQ----------- 335
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
ALE F M ++ +PN I++ GVL AC+
Sbjct: 336 -ALELFESMKESGSRPNYITVLGVLFACSHA----------------------------- 365
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
G ++K GW YF MKK + ++P E Y C++DLL RA
Sbjct: 366 ----------------------GLVEK--GWYYFRSMKKLFGVDPGREHYGCLIDLLGRA 401
Query: 365 GQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------ 408
G+ D+ + + +M EP S C N D+A +AA+ + ELEP +G
Sbjct: 402 GRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLS 461
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
++H FI GDTSH + +I ++L
Sbjct: 462 NIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLN 521
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L + +GY+ K HSEKLA+ FGL++ S +R+ KNLR
Sbjct: 522 DLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLR 581
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CGDCH K VS+ E R I++ D R+HHF DG CSCGDYW
Sbjct: 582 ICGDCHVFAKVVSRME----HRSIVIRDPIRYHHFQDGVCSCGDYW 623
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC---AFLGM-------------F 62
D+ T+T L + C L LELG QVH H++ +L A + M F
Sbjct: 252 DQATLTSVL--RACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAF 309
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
+M E++V SW++M+ GY + + LF + + G
Sbjct: 310 SRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347
>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
Length = 822
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 271/643 (42%), Gaps = 209/643 (32%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLGM-------------- 61
PD T++ + C +L ++ LG+Q+H+ + G + C G+
Sbjct: 252 PDRYTMSS--MISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMD 309
Query: 62 -----FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLIDEGV----------YKAC 105
FE+M + +V SWT+++ Y G E +++ LF +++E + KAC
Sbjct: 310 YANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKAC 369
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---------- 155
+ + DH G+ V+ ++I V ++ M+ + G ME A F +
Sbjct: 370 ANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCI 429
Query: 156 ---------------------KDFSNL-------SLLKHGKEIHPHHLKKDDLESDLLVN 187
F++L +L G+++H LK SD V+
Sbjct: 430 TEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAG-FGSDRFVS 488
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y++C YL+ A F+++K ++++SW +M I+G ++G E AL
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDRNVISWTSM------------ISGLAKHGYAERAL 536
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F MI T ++PN ++ VL+AC+ VG+
Sbjct: 537 SLFHDMILTGVKPNDVTYIAVLSACSH------------------------VGLV----- 567
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG YF M++++ + P ME Y CMVDLLAR+G
Sbjct: 568 ------------------------REGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLV 603
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS-- 407
+ L F+ +MP + + C N ++ E AA+++ ELEP LS+
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLY 663
Query: 408 ---------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLY 434
H F AGDTSH I KL L
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLV 723
Query: 435 SEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
EIK +GY +K HSEK+A+AFGLI+TS P+R+ KNLR+C
Sbjct: 724 GEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCA 783
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS KY+SKA + REII+ D+ RFH DG CSCG+YW
Sbjct: 784 DCHSAIKYMSKATR----REIILRDSNRFHRMKDGECSCGEYW 822
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 108/263 (41%), Gaps = 72/263 (27%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYK 103
+L + +F+ + E+ V WT ++ Y EE V +F +++G +
Sbjct: 203 DLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMIS 262
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
AC+EL R+G ++ + + F +ACV ++DM+ K SN+
Sbjct: 263 ACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK----------------SNI-- 304
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
MD+ K F ++++ ++SW A+++
Sbjct: 305 ------------------------EQAMDYANKV---------FERMRKNDVISWTALIS 331
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY G +E + F M+ ++PN I+ S +L ACA + G++
Sbjct: 332 GYVQSGVQE-----------NKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQ 380
Query: 284 IHGYVLRHHIQLSTGVGIALISI 306
+H +V++ + + VG AL+S+
Sbjct: 381 VHAHVIKSNQAAAHTVGNALVSM 403
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V ++L+D A+ L A F + +K +V W +++ Y G EE
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE-------- 237
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+E F ++ +P+ ++S +++AC ++ +LG ++H LR
Sbjct: 238 ----AVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR----------- 282
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-GWRYFEMMKK 343
G + + V L+DMY + Q + + FE M+K
Sbjct: 283 -----MGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRK 320
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAML 222
L+ G+ +H L+ D L+ D +V NSL+ Y++C + A F ++ + +VSW AM
Sbjct: 64 LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ A G E +L M+++ + PN +L V AC
Sbjct: 124 SCLARNGAERE------------SLLLIGEMLESGLLPNAYTLCAVAHAC 161
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 166/624 (26%), Positives = 257/624 (41%), Gaps = 166/624 (26%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
++F R N + H+ V+L L FE + ER++ SW SM+ N G+
Sbjct: 163 VVFDRMKLRNTSSWNAMISLHMNCGRVDLA--LAQFELLSERDIVSWNSMIAGCNQHGFD 220
Query: 87 EEIVNLFYLLIDEGVYK-----------ACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
E + F ++ + K AC+ L+ GK ++ Y++ F+ + V
Sbjct: 221 NEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNA 280
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
++ M+ K G +E+A E+ S+L D++ +L++ Y
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDL---------------------DVIAFTALLNGYV 319
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
K + A F+ +K +V+W AM+ GY G + A+E F M+
Sbjct: 320 KLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNND------------AIEVFKTMVS 367
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQG 308
+PN+ +L+ +L+A + V GK+IH +R LS VG AL SI G
Sbjct: 368 EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSING 427
Query: 309 L---------GTGSFVWNSLIDMYGRCG----AIQ------------------------- 330
+ W S+I + G AI+
Sbjct: 428 ARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACT 487
Query: 331 ----KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----- 381
+G YF++MK + ++P + Y CMVDL RAG + F++ MP EP
Sbjct: 488 HGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAW 547
Query: 382 -SSAEPC----NPDIAEHAARHLFELEPLSSG---------------------------- 408
S C N D+A+ AA L +EP +SG
Sbjct: 548 GSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKAR 607
Query: 409 ---------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC---- 449
K H F D H +I + + +++ EIKK+G+ +
Sbjct: 608 GVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDL 667
Query: 450 ----------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
HSEKLA+AFG+IST + LR++KNLR+C DCH+ K++SK +R
Sbjct: 668 EVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLV----DR 723
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF DG+CSC DYW
Sbjct: 724 EIIVRDATRFHHFKDGSCSCKDYW 747
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 65/328 (19%)
Query: 10 LQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPE 67
L + DL N P + T ++ I K LE QV F+ +P
Sbjct: 27 LDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQV-----------------FDLIPV 69
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGKDV 117
R+ SWT+++ YN +G +E+ + +F ++ + V +C+ +GK V
Sbjct: 70 RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKV 129
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ +++ + V +L+M+ K G ++MA F+ N S
Sbjct: 130 HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSW------------- 176
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
N+++ + C + +A +F + ++ +VSWN+M+AG GF E
Sbjct: 177 ----------NAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNE---- 222
Query: 238 TQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
AL+FFS +++ T ++P+ SL+ L+ACA ++ GK+IHGY++R S
Sbjct: 223 --------ALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDAS 274
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYG 324
VG ALIS+ G + +I+ G
Sbjct: 275 GAVGNALISMYAKSGGVEIARRIIEQSG 302
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 141/330 (42%), Gaps = 53/330 (16%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------- 233
N+LM+ YAK + AH F+++ K SWN +L+GYA G E+
Sbjct: 14 NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73
Query: 234 -----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
I G+ Q G E A++ F M++ + P +L+ VLA+CA +GK++H +V
Sbjct: 74 SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV 133
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQKN 332
++ + V +L+++ TG WN++I ++ CG + +
Sbjct: 134 VKLGLHACVPVANSLLNMYA-KTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRV--D 190
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
FE++ E + + M+ + G ++ L F + + +S +P +A
Sbjct: 191 LALAQFELLS-----ERDIVSWNSMIAGCNQHGFDNEALQFFSSI-LKDTSLKPDRFSLA 244
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR-IPACG 450
A LE LS GK +H +I T + L+ +Y++ + +R I G
Sbjct: 245 S-ALSACANLEKLSFGKQIHGYIV-RTMFDASGAVGNALISMYAKSGGVEIARRIIEQSG 302
Query: 451 HSEKLALAF-----GLISTSPGSPLRVIKN 475
S+ +AF G + +P R I N
Sbjct: 303 ISDLDVIAFTALLNGYVKLGDITPARQIFN 332
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 175/640 (27%), Positives = 262/640 (40%), Gaps = 197/640 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ +T+A + C LELG Q+H +I G++L LG
Sbjct: 585 PDK--ITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAY 642
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F + RNV SWT+M+G + G + LF+ + ++G
Sbjct: 643 EVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF------------------ 684
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+PV F + M+S +E GK++ H L
Sbjct: 685 --------------KPVKSTFSSILKACMSSACLDE-----------GKKVIAHILN-SG 718
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E D V N+L+ Y+K + A F K+ + ++SWN M+AGYA Q
Sbjct: 719 YELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYA------------Q 766
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G G TAL+F +M + + N S +L AC+ + GK +H +++ +Q V
Sbjct: 767 NGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRV 826
Query: 300 GIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQKN----------- 332
G ALIS+ GS WN++I+ Y + G K
Sbjct: 827 GAALISMYA-KCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEG 885
Query: 333 ----------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
EG R F ++ ++ + P +E Y C+V LL RAG+F +
Sbjct: 886 IKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEA 945
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL------------------ 402
+ +MPF P +A C N +AEHAA + +L
Sbjct: 946 ETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAA 1005
Query: 403 --------------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
EP S +H FIA D SH +I E+L RL E+
Sbjct: 1006 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEM 1065
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
++ GY + C HSE+LA+A+GL+ T PG+P+R+ KNLR+CGDCH
Sbjct: 1066 ERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCH 1125
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ +K++SK REII D+ RFH F +G CSC D+W
Sbjct: 1126 TASKFISKLVG----REIIARDSNRFHTFKNGKCSCEDFW 1161
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 154/405 (38%), Gaps = 111/405 (27%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------L 55
K L + M +TY I C LE G ++H+ +I G + L
Sbjct: 165 KKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSL 224
Query: 56 CAFLGMFEKMP----------ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---- 101
G E +P R+V S+ +M+G+Y Y EE + LF + EG+
Sbjct: 225 LNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDK 284
Query: 102 ---------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS-- 150
+ S L + GK ++ ++ + V + MF++CG + A
Sbjct: 285 VTYINLLDAFTTPSMLDE---GKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341
Query: 151 ----------------------GEFEE------------------------KDFSNLSLL 164
G +EE S L
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKAL 401
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G+ IH H + + SD+ + NSL+ YA+C L A F+ + ++ L+SWNA++AG
Sbjct: 402 GAGELIHSH-ISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAG 460
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
YA R E G A++ + +M ++P ++ +L+AC + GK I
Sbjct: 461 YA----RREDRG--------EAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
H +LR G+ + + N+L++MY RCG+I
Sbjct: 509 HEDILR----------------SGIKSNGHLANALMNMYRRCGSI 537
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 143/353 (40%), Gaps = 88/353 (24%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL 95
+++ +G + + CG ++ E +R+V + +++ G+YEE +Y
Sbjct: 317 SDIRVGTALATMFVRCG-DVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375
Query: 96 LIDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
+ +GV ACS K G+ ++ ++ + + + ++ M+ +CG
Sbjct: 376 MRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGD 435
Query: 146 MEMASGEFE---EKDF-------------------------------------------- 158
+ A F ++D
Sbjct: 436 LPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSA 495
Query: 159 -SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+N S GK IH L+ ++S+ + N+LM+ Y +C + A F + + ++S
Sbjct: 496 CTNSSAYSDGKMIHEDILR-SGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIIS 554
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN+M+AG+A Q+G E A + F M + ++P+ I+ + VL C +
Sbjct: 555 WNSMIAGHA------------QHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEA 602
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+LG++IH ++ +QL +G N+LI+MY RCG++Q
Sbjct: 603 LELGRQIHMLIIESGLQLDVNLG----------------NALINMYIRCGSLQ 639
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/358 (22%), Positives = 140/358 (39%), Gaps = 87/358 (24%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEK 64
TY + C L G +H+H+ G + + A G +F
Sbjct: 386 TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNT 445
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
MP+R++ SW +++ Y E + L+ + EGV AC+ + G
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG 505
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIH 171
K +++ ++ + N + +++M+ +CG + A FE +D + + + G H
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565
Query: 172 PHH---------LKKDDLESD---------------------------------LLVN-- 187
+ +KK+ LE D L VN
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L++ Y +C L+ A+ F ++ ++++SW AM I GF G+ A
Sbjct: 626 NALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAM------------IGGFADQGEDRKAF 673
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
E F +M +P + S +L AC GK++ ++L +L TGVG ALIS
Sbjct: 674 ELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALIS 731
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/400 (22%), Positives = 144/400 (36%), Gaps = 111/400 (27%)
Query: 14 DLTN-----PDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
DL+N P E Y + Q C + +L ++HA ++ GV FL
Sbjct: 68 DLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMY 127
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+F KMP R+V SW S++ Y G+ ++ LF + G
Sbjct: 128 VKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYI 187
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EK 156
+ AC + GK ++ +I ++ + V+ +L+M+ KC + A F +
Sbjct: 188 SILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRR 247
Query: 157 D---------------------------------------------FSNLSLLKHGKEIH 171
D F+ S+L GK IH
Sbjct: 248 DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIH 307
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + L SD+ V +L + +C + A + +V +NA++A A
Sbjct: 308 KLAV-NEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALA----- 361
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q+G E A E + +M + N + VL AC+ K G+ IH +
Sbjct: 362 -------QHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSH---- 410
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
IS G + + NSLI MY RCG + +
Sbjct: 411 ------------ISEVGHSSDVQIGNSLISMYARCGDLPR 438
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 273/637 (42%), Gaps = 191/637 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++M ER+V SW S++ Y G E+ +++F ++ G V+ C++ +
Sbjct: 101 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 160
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
+G+ V+ + F +LDM+ KCG ++ A
Sbjct: 161 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 220
Query: 150 ------SGE----FEEKDFSNLS-----------------LLKHGKEIHPHHLKKDDLES 182
+GE FEE + +S LL GK +H +K++DL
Sbjct: 221 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH-EWIKENDLGF 279
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V+N+LMD YAKC ++ A FS+++ K ++SWN ++ GY+ + E
Sbjct: 280 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------- 330
Query: 243 GETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F+ +++ P+ +++ VL ACA + F G+EIHGY++R+ V
Sbjct: 331 ---ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 387
Query: 302 ALISI--------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQK 331
+L+ + + + V W +I YG R I+
Sbjct: 388 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 447
Query: 332 NE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+E GWR+F +M+ E +EP +E Y C+VD+LAR G F
Sbjct: 448 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 507
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG--------------- 408
++ MP P + A C + +AE A +FELEP ++G
Sbjct: 508 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 567
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+V+ F+AGD+S+ I L ++ + + +
Sbjct: 568 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 627
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY K CGHSEKLA+A G+IS+ G +RV KNLR+CGDCH
Sbjct: 628 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 687
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK + REI++ D+ RFH F DG CSC +W
Sbjct: 688 KFMSKLTR----REIVLRDSNRFHQFKDGHCSCRGFW 720
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 43/248 (17%)
Query: 146 MEMASGEFE--EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+EM S F K FS+L + G+++H LK E + V NSL+ FY K + + A
Sbjct: 40 VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSA 98
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F ++ ++ ++SWN+++ GY G E L F +M+ + ++ +
Sbjct: 99 RKVFDEMTERDVISWNSIINGYVSNGL------------AEKGLSVFVQMLVSGIEIDLA 146
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
++ V A CA + LG+ +H S GV N+L+DMY
Sbjct: 147 TIVSVFAGCADSRLISLGRAVH----------SIGVKAC------FSREDRFCNTLLDMY 190
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
+CG + + F M + ++ Y M+ AR G + + FE
Sbjct: 191 SKCGDLDSAKA--VFREMS-----DRSVVSYTSMIAGYAREGLAGEAVKL-----FEEME 238
Query: 384 AEPCNPDI 391
E +PD+
Sbjct: 239 EEGISPDV 246
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 178/693 (25%), Positives = 282/693 (40%), Gaps = 210/693 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
+TY + L+ G VH+H++ G E +G +FEK
Sbjct: 346 ITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEK 405
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
+ R++ +W +M+G G +EE +++ + EG + AC G
Sbjct: 406 LVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWG 465
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF------------- 158
++++ ++ F + V+ ++ M+ +CG ++ A F + KD
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525
Query: 159 --------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLV 186
S+ + L G+ IH ++ L +D V
Sbjct: 526 GLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG-LATDAHV 584
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L++ Y+ C +K A F ++ Q+ +V++NAM+ GYA G+ A
Sbjct: 585 ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNL------------GKEA 632
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L+ F R+ + ++P+ ++ +L ACA + KEIH VL+ T +G AL+S
Sbjct: 633 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVST 692
Query: 307 QGLGTGSFV----------------WNSLIDMYGRCGAIQK------------------- 331
GSF WN++I + G Q
Sbjct: 693 YA-KCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVT 751
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG RYF M +++ + P +E Y CMVDLL RAGQ D+ +K M
Sbjct: 752 FVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM 811
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
PF+ ++ C N +AE AA +L+P ++
Sbjct: 812 PFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAA 871
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K+H F+A D SH KI +L +L +K GY+
Sbjct: 872 KLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVP 931
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K C HSE+LA+A+GLIST PG+P+R+ KNLR+C DCH+ TK+++
Sbjct: 932 DTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFIT 991
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +REI+ D RFHHF DG CSCGDYW
Sbjct: 992 KIV----DREIVARDVNRFHHFKDGVCSCGDYW 1020
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 168/431 (38%), Gaps = 114/431 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIV-CGV----ELCAFLGMFEK--------------- 64
Y + +RC ++ +L G +VH H+I C V + A + M+ +
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLN 203
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
ER V SW +M+ Y GY EE + L + G+ +C G
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD----------------- 157
++++ + + + V +L+M+ KCG + A F++ +
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323
Query: 158 -------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
FS + LK GK +H H L ESDL V
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGH-ESDLAV 382
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+ YAKC K F K+ + L++WN M+ G A GG EE A
Sbjct: 383 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEE------------A 430
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
E + +M + M PN I+ +L AC G+EIH V++ IS+
Sbjct: 431 SEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFD-------ISV 483
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
Q N+LI MY RCG+I K+ + +M++K+ + + M+ LA++G
Sbjct: 484 Q---------NALISMYARCGSI-KDARLLFNKMVRKD------IISWTAMIGGLAKSGL 527
Query: 367 FDDTLNFMKKM 377
+ L + M
Sbjct: 528 GAEALAVFQDM 538
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 39/204 (19%)
Query: 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
C M+M E KD L G+E+H H ++ + VN +L++ Y +C ++
Sbjct: 142 CDYMKMLKRCIEVKD------LVAGREVHEHIIQHCTVLDQYTVN-ALINMYIQCGSIEE 194
Query: 203 AHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
A ++K+ ++ + SWNAM+ GY QYG E AL+ M Q +
Sbjct: 195 ARQVWNKLNHTERTVHSWNAMVVGY------------VQYGYIEEALKLLREMQQHGLAL 242
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ +L++C + G+EIH ++ + V N ++
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVA----------------NCIL 286
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKE 344
+MY +CG+I +E F+ M+ +
Sbjct: 287 NMYAKCGSI--HEAREVFDKMETK 308
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 21/134 (15%)
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ A++ + Q + N+ +L C +VK G+E+H ++++H L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLD------- 175
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+ N+LI+MY +CG+I++ ++ K + E + + MV +
Sbjct: 176 ---------QYTVNALINMYIQCGSIEEAR-----QVWNKLNHTERTVHSWNAMVVGYVQ 221
Query: 364 AGQFDDTLNFMKKM 377
G ++ L +++M
Sbjct: 222 YGYIEEALKLLREM 235
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 187/700 (26%), Positives = 288/700 (41%), Gaps = 223/700 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM----------- 61
PD T+ + + C L +L G +VH H+I G E + A + M
Sbjct: 193 PD--VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYE-----EIVNLFYLLID----------EGVYKA 104
F++MP R+ SW +M+ GY+E E + LF+++ + V A
Sbjct: 251 LVFDRMPRRDRISWNAMIS-----GYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEKDF--- 158
C L D R+G++V+ Y+I F V ++ M G EM + E KD
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365
Query: 159 ------------------------------------------SNLSLLKHGKEIHPHHLK 176
+ L LL G +H
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLH-EFAD 424
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ L S ++V NSL+D Y+KCR + A F +I K+++SW +++ G L
Sbjct: 425 RTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRL--------- 475
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Y E AL FF +MI + ++PN+++L VL+ACA++ GKEIH + LR +
Sbjct: 476 --NYRSFE-ALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFD 531
Query: 297 TGVGIALISI---------------------------------QGLG------------- 310
+ AL+ + QG G
Sbjct: 532 GFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIES 591
Query: 311 ---TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+ SL+ R G + +G YFE M+ ++++ P ++ Y +VDLL RAG+
Sbjct: 592 DVNPDEITFTSLLCACSRSGMV--TDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRL 649
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS----------- 406
+D F+KKMP +P A C N ++ E AA+H+FE++ S
Sbjct: 650 EDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLY 709
Query: 407 --------------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLY 434
+G+VH+F+ GD H + +I+ L Y
Sbjct: 710 ADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFY 769
Query: 435 SEIKKIGYM-------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+++ G K CGHSE+LA+AFGLI+T PG+P+ V KNL MC +
Sbjct: 770 EKMEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPGTPIWVTKNLYMCEN 829
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
CH+ K++SK + R I + D +FHHF DG CSCGD
Sbjct: 830 CHNTVKFISKVVR----RGISVRDTEQFHHFKDGVCSCGD 865
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 87/329 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F KM ER++FSW ++G Y GY++E +NL++ ++ G V + C L D
Sbjct: 151 VFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD 210
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------RM---------EMASG 151
G++V+ ++I FE + V ++ M++KCG RM M SG
Sbjct: 211 LARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISG 270
Query: 152 EFE-------------------EKDFSNLSLL----------KHGKEIHPHHLKKDDLES 182
FE + D ++ + + G+E+H + +K +
Sbjct: 271 YFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKT-GFVA 329
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ VNNSL+ ++ A FSK++ K LVSW AM++GY G E+
Sbjct: 330 EVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEK--------- 380
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+E ++ M + P+ I+++ VL+ACA + G +H + R
Sbjct: 381 ---AVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR------------ 425
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
GL + V NSLIDMY +C I K
Sbjct: 426 ----TGLTSYVIVANSLIDMYSKCRCIDK 450
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 36/206 (17%)
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL-------KHGKEIHPHHLKKDDLESD 183
C+K + I M+ EE+ + L L G +H + + K
Sbjct: 70 CLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSY-VSKTVTRLG 128
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + N+L+ + + L A F K+ ++ L SWN ++ GYA G+ +E
Sbjct: 129 VRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDE---------- 178
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL + RM+ ++P+ + VL C + G+E+H +V+R+
Sbjct: 179 --ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRY------------ 224
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAI 329
G + V N+LI MY +CG I
Sbjct: 225 ----GFESDVDVVNALITMYVKCGDI 246
>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
Length = 1024
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 271/664 (40%), Gaps = 213/664 (32%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---- 58
++N + + M + TY I + C +L +LELG Q+H+ +I +L A+
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490
Query: 59 -LGMFEKMPE-------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+ M+ K+ + ++V SWT+M+ Y + ++ + F ++D G+
Sbjct: 491 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 550
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----- 149
AC+ L+ + G+ ++ F + + ++ ++ +CG++E +
Sbjct: 551 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 610
Query: 150 -------------------SGEFEE------------------------KDFSNLSLLKH 166
SG EE K S + +K
Sbjct: 611 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 670
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H + K +S+ V N+L+ YAKC + A +F ++ K+ VSWNA++ Y+
Sbjct: 671 GKQVHAV-ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 729
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF G AL+ F +MI ++++PN ++L GVL+AC+ +
Sbjct: 730 KHGF------------GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI----------- 766
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
L+D +G YFE M EY
Sbjct: 767 -------------------------------GLVD-----------KGIAYFESMNSEYG 784
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P E Y C+VD+L RAG F+++MP +P + C N +I E AA
Sbjct: 785 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 844
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL ELEP S +HSF
Sbjct: 845 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 904
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK-------------RIPACG-HSEKLALAF 459
GD +H L +I E L +IGY++ + P HSEKLA++F
Sbjct: 905 YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 964
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+S P+ V+KNLR+C DCH+ K+VSK REII+ D YRFHHF GACSC
Sbjct: 965 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN----REIIVRDAYRFHHFEGGACSC 1020
Query: 520 GDYW 523
DYW
Sbjct: 1021 KDYW 1024
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/430 (20%), Positives = 165/430 (38%), Gaps = 123/430 (28%)
Query: 24 TYALIFQRCPKLN-NLELGIQVHAHLIVCGVE------------------LCAFLGMFEK 64
T + + C K N +L+ G ++H+ ++ G++ L +F++
Sbjct: 46 TLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDE 105
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVG 114
MPER +F+W M+ E+ LF ++ E GV +AC + V
Sbjct: 106 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC---RGGSVA 162
Query: 115 KDVYDYM-ISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEE---KDFSN------- 160
DV + + I ++G + V P++D++ + G +++A F+ KD S+
Sbjct: 163 FDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISG 222
Query: 161 --------------------------------------LSLLKHGKEIHPHHLKKDDLES 182
+ L+ G+++H LK S
Sbjct: 223 LSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG-FSS 281
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D V N+L+ Y L A FS + Q+ V++N + I G +Q G
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTL------------INGLSQCGY 329
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE A+E F RM ++P++ +L+ ++ AC+ G+++H Y +
Sbjct: 330 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK------------ 377
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G + + + +L+++Y +C I+ +Y +E +E +L
Sbjct: 378 ----LGFASNNKIEGALLNLYAKCADIE----------TALDYFLETEVENVVLWNVMLV 423
Query: 363 RAGQFDDTLN 372
G DD N
Sbjct: 424 AYGLLDDLRN 433
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 127/321 (39%), Gaps = 75/321 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
++ + C K+ +LE+G Q+H ++ G V L LG +F M
Sbjct: 250 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 309
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
+R+ ++ +++ + GY E+ + LF + +G+ + L
Sbjct: 310 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS--------------- 354
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + C A G L G+++H + K S+
Sbjct: 355 -------------LVVACS----ADGT-----------LFRGQQLHAYTTKLG-FASNNK 385
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +L++ YAKC ++ A F + + +++V WN ML Y L D
Sbjct: 386 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL------------LDDLRN 433
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+ F +M ++ PN + +L C ++ +LG++IH +++ + QL+ V LI
Sbjct: 434 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 493
Query: 306 IQG-LGTGSFVWNSLIDMYGR 325
+ LG W+ LI G+
Sbjct: 494 MYAKLGKLDTAWDILIRFAGK 514
>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1064
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 271/664 (40%), Gaps = 213/664 (32%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---- 58
++N + + M + TY I + C +L +LELG Q+H+ +I +L A+
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530
Query: 59 -LGMFEKMPE-------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+ M+ K+ + ++V SWT+M+ Y + ++ + F ++D G+
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 590
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----- 149
AC+ L+ + G+ ++ F + + ++ ++ +CG++E +
Sbjct: 591 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 650
Query: 150 -------------------SGEFEE------------------------KDFSNLSLLKH 166
SG EE K S + +K
Sbjct: 651 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 710
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H + K +S+ V N+L+ YAKC + A +F ++ K+ VSWNA++ Y+
Sbjct: 711 GKQVHAV-ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF G AL+ F +MI ++++PN ++L GVL+AC+ +
Sbjct: 770 KHGF------------GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI----------- 806
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
L+D +G YFE M EY
Sbjct: 807 -------------------------------GLVD-----------KGIAYFESMNSEYG 824
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P E Y C+VD+L RAG F+++MP +P + C N +I E AA
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL ELEP S +HSF
Sbjct: 885 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK-------------RIPACG-HSEKLALAF 459
GD +H L +I E L +IGY++ + P HSEKLA++F
Sbjct: 945 YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 1004
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+S P+ V+KNLR+C DCH+ K+VSK REII+ D YRFHHF GACSC
Sbjct: 1005 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN----REIIVRDAYRFHHFEGGACSC 1060
Query: 520 GDYW 523
DYW
Sbjct: 1061 KDYW 1064
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/436 (20%), Positives = 169/436 (38%), Gaps = 125/436 (28%)
Query: 18 PDECTVTYALIFQRCPKLN-NLELGIQVHAHLIVCGVE------------------LCAF 58
P+ T+ + L + C K N +L+ G ++H+ ++ G++ L
Sbjct: 82 PNHQTLKWLL--EGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F++MPER +F+W M+ E+ LF ++ E GV +AC
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC--- 196
Query: 109 KDHRVGKDVYDYM-ISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEE---KDFSN- 160
+ V DV + + I ++G + V P++D++ + G +++A F+ KD S+
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 161 --------------------------------------------LSLLKHGKEIHPHHLK 176
+ L+ G+++H LK
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
SD V N+L+ Y L A FS + Q+ V++N + I G
Sbjct: 317 LG-FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTL------------ING 363
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+Q G GE A+E F RM ++P++ +L+ ++ AC+ G+++H Y +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK------ 417
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
G + + + +L+++Y +C I+ +Y +E +E
Sbjct: 418 ----------LGFASNNKIEGALLNLYAKCADIE----------TALDYFLETEVENVVL 457
Query: 357 MVDLLARAGQFDDTLN 372
+L G DD N
Sbjct: 458 WNVMLVAYGLLDDLRN 473
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 127/321 (39%), Gaps = 75/321 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
++ + C K+ +LE+G Q+H ++ G V L LG +F M
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
+R+ ++ +++ + GY E+ + LF + +G+ + L
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS--------------- 394
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + C A G L G+++H + K S+
Sbjct: 395 -------------LVVACS----ADGT-----------LFRGQQLHAYTTKLG-FASNNK 425
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +L++ YAKC ++ A F + + +++V WN ML Y L D
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL------------LDDLRN 473
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+ F +M ++ PN + +L C ++ +LG++IH +++ + QL+ V LI
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 306 IQG-LGTGSFVWNSLIDMYGR 325
+ LG W+ LI G+
Sbjct: 534 MYAKLGKLDTAWDILIRFAGK 554
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 182/637 (28%), Positives = 275/637 (43%), Gaps = 195/637 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY L+ C ++L G++VH H++ G + FL +F+K
Sbjct: 79 TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG--KDVYDYMIS 123
+R ++ W ++ + G+ EE++ L++ K +R+G D + Y
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYW--------------KMNRIGVESDRFTYTYV 184
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+K ACV +C L GKEIH H L + S
Sbjct: 185 LK----ACVAS-------EC----------------TADHLTKGKEIHAH-LTRRGYNSH 216
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + +L+D YA+ + A F+ + +++VSW+AM+A YA + G
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYA------------KNGKA 264
Query: 244 ETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M+ D PN++++ VL ACA + + G+ IHGY+LR + V
Sbjct: 265 FEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVIS 324
Query: 302 ALISIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQ------------ 330
AL+++ G L G V WNSLI YG G AIQ
Sbjct: 325 ALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASP 384
Query: 331 -----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG R FE M +++ ++P +E Y CMVDLL RA + D+
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKM 444
Query: 374 MKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------- 408
++ M EP S C N ++AE A+R LF LEP ++G
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
K++SF++ D + L+ +I L++L ++K+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEK 564
Query: 441 GYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + GHSEKLALAFGLI+TS G P+R+ KNLR+C DCH T
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFT 624
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E+EI++ D RFH F +G CSCGDYW
Sbjct: 625 KFISKF----MEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 19 DECTVTYAL---IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG---- 60
D T TY L + C ++L G ++HAHL G V++ A G
Sbjct: 177 DRFTYTYVLKACVASECTA-DHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDY 235
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------------GVYKAC 105
+F MP RNV SW++M+ Y G E + F ++ E V +AC
Sbjct: 236 ASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQAC 295
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLS 162
+ L G+ ++ Y++ + V ++ M+ +CG++++ F+ ++D + +
Sbjct: 296 ASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWN 355
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNS 189
L +H + K + ++L N +
Sbjct: 356 SLISSYGVHGYGRKAIQIFEEMLANGA 382
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FE 63
+VT + Q C L LE G +H +++ G++ + A + M F+
Sbjct: 285 SVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFD 344
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+M +R+V SW S++ Y V GY + + +F ++ G V ACS
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404
Query: 114 GKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMAS 150
GK +++ M I + E AC ++D+ + R++ A+
Sbjct: 405 GKRLFESMWRDHGIKPQVEHYAC----MVDLLGRANRLDEAA 442
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 218 bits (555), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 181/649 (27%), Positives = 271/649 (41%), Gaps = 215/649 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM---------------- 61
P T++ AL + C + ++LG Q+H+ L+ +E +F+G+
Sbjct: 287 PSMFTLSSAL--KACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+ MP ++V W S++ Y+ GY E ++LF + EG + K+ + +
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQ 404
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE--------------- 154
+ + V+ I ++ + V +LD + KC +E A+ FE
Sbjct: 405 ANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMIT 464
Query: 155 -------------------EKDF--------------SNLSLLKHGKEIHPHHLKKDDLE 181
++D +NLS + GK+IH H LK L
Sbjct: 465 AYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG-LL 523
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD+ NSL++ YAKC + A C F++I SW +++ A+ I G Q+G
Sbjct: 524 SDVFAGNSLVNMYAKCGSIDDASCIFNEI------SWRGIVSWSAM------IGGLAQHG 571
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G AL+ F +M++ + PN I+L VL+AC +H L T
Sbjct: 572 HGRKALQLFYQMLKNGILPNHITLVSVLSAC------------------NHAGLVT---- 609
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
E R+F +M+K + + P E Y CMVD+L
Sbjct: 610 -------------------------------EARRFFGLMEKLFGITPTQEHYACMVDIL 638
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG--- 408
R G+ D+ + +K+MPF+ S+A N ++ HAA L LEP SG
Sbjct: 639 GRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHI 698
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
KV++FI GD SH +I
Sbjct: 699 LLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYV 758
Query: 429 KLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIK 474
KL L + GY+ I HSEKLA+AFGLI+T PG+P+RV K
Sbjct: 759 KLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKK 818
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K++SK REII+ D RFHHF DG+CSCGDYW
Sbjct: 819 NLRVCIDCHTAFKFISKVA----SREIIVRDINRFHHFRDGSCSCGDYW 863
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 63/308 (20%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFY---LLIDEG-------VYKACSELKDHRVGKD 116
E ++ SW++++ Y G EE + +Y LL +G V K CS ++ +GK
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169
Query: 117 VYDY-----MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
++ MIS N VL+ A E++++ G ++H
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLN----------ACAGLEDENY--------GMKVH 211
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ L K +SD N+L+D YAK + A F +I + +VSWNA++AG L
Sbjct: 212 GY-LIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL---- 266
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
+ + AL+ +M + P+ +LS L ACA + KLG+++H +++
Sbjct: 267 --------HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKM 318
Query: 292 HIQLSTGVGIALISIQ---GLGTGS------------FVWNSLIDMYGRCGAIQKNEGWR 336
++ + VG+ LI + GL + VWNS+I Y CG E
Sbjct: 319 DMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCG--YDIEAMS 376
Query: 337 YFEMMKKE 344
F M KE
Sbjct: 377 LFTNMYKE 384
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L +Q D+ PD ++ +F C L+ E G Q+H H++ CG+ F G
Sbjct: 480 LRMQDRDI-KPD--AFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMY 536
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F ++ R + SW++M+G G+ + + LFY ++ G+
Sbjct: 537 AKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGI 588
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 182/637 (28%), Positives = 276/637 (43%), Gaps = 195/637 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY L+ C ++L ++VH H++ G + FL +F+K
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG--KDVYDYMIS 123
+R ++ W ++ + G+ EE++ L++ K +R+G D + Y
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYW--------------KMNRIGVESDRFTYTYV 184
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+K ACV +C ++ L GKEIH H L + S
Sbjct: 185 LK----ACVAS-------EC----------------TVNHLMKGKEIHAH-LTRRGYSSH 216
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + +L+D YA+ + A F + +++VSW+AM+A YA + G
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYA------------KNGKA 264
Query: 244 ETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M++ D PN++++ VL ACA + + GK IHGY+LR + V
Sbjct: 265 FEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVIS 324
Query: 302 ALISIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQ------------ 330
AL+++ G L G V WNSLI YG G AIQ
Sbjct: 325 ALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP 384
Query: 331 -----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG R FE M +++ ++P +E Y CMVDLL RA + D+
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM 444
Query: 374 MKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------- 408
++ M EP S C N ++AE A+R LF LEP ++G
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
K++SF++ D + L+ +I L++L ++K+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564
Query: 441 GYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + GHSEKLALAFGLI+TS G P+R+ KNLR+C DCH T
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFT 624
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E+EI++ D RFH F +G CSCGDYW
Sbjct: 625 KFISKF----MEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 37/162 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FE 63
+VT + Q C L LE G +H +++ G++ + A + M F+
Sbjct: 285 SVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD 344
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+M +R+V SW S++ Y V GY ++ + +F ++ G V ACS
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404
Query: 114 GKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMAS 150
GK +++ M I + E AC ++D+ + R++ A+
Sbjct: 405 GKRLFETMWRDHGIKPQIEHYAC----MVDLLGRANRLDEAA 442
>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
Length = 787
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 184/649 (28%), Positives = 277/649 (42%), Gaps = 181/649 (27%)
Query: 39 ELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMY 80
ELG +HA + G E AF+G +F+ + +++ SWT M+ +
Sbjct: 156 ELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCF 215
Query: 81 NVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
++E + LF + G V+KAC L+ VGK V+ + ++E +
Sbjct: 216 AENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDL 275
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEE---KD------------------------------ 157
V +LD++ K G ++ A FEE KD
Sbjct: 276 YVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA 335
Query: 158 ------FSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
F+ S+L+ G +IH H +K L SD+ V+N+LMD YAKC ++
Sbjct: 336 LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKCGRMEN 394
Query: 203 AHCKFSKIKQKHLVS-WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
+ F++ ++ V+ WN ++ G+ Q GDGE AL F M++ +Q
Sbjct: 395 SMXLFAESPHRNDVTPWNTVIVGH------------VQLGDGEKALRLFLNMLEYRVQAT 442
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-- 315
++ S L ACA + + G +IH ++ V ALI + + V
Sbjct: 443 EVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFD 502
Query: 316 ---------WNSLIDMYGRCGAIQKN-----EGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
WN++I Y G N +G YF M +++ +EP +E Y CMV LL
Sbjct: 503 LMNKQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 562
Query: 362 ARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPL------ 405
R G D + + ++PF+PS A + DI +A+H+ E+EP
Sbjct: 563 GRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHV 622
Query: 406 -------------------------------------SSGKVHSFIAGDTSHSLVHKISE 428
S G VHSF GDTSH V I+
Sbjct: 623 LLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVING 682
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L L+ + KK GY+ K HSE+LAL+FG+I T GSP+R++K
Sbjct: 683 MLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMK 742
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K +SK +REI++ D RFHHF +G CSCGDYW
Sbjct: 743 NLRICVDCHAAIKCISKV----VQREIVVRDINRFHHFQEGLCSCGDYW 787
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 138/336 (41%), Gaps = 87/336 (25%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKA 104
LC +F++MPERN S+ +++ Y + E + LF L EG + K
Sbjct: 89 LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKL 148
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------- 154
+ +G ++ + + E NA V ++D + CGR+++A F+
Sbjct: 149 LVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSW 208
Query: 155 -----------------------------EKDFSNLSLLKH---------GKEIHPHHLK 176
+F+ S+ K GK +H LK
Sbjct: 209 TGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALK 268
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
E DL V +L+D Y K + A F +I +K ++ W+ M+A YA
Sbjct: 269 S-RYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYA---------- 317
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q + A+E F +M Q + PN + + VL ACA ++G LG +IH +V++
Sbjct: 318 --QSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK------ 369
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
GL + FV N+L+D+Y +CG ++ +
Sbjct: 370 ----------IGLHSDVFVSNALMDVYAKCGRMENS 395
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 29/163 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H LK+ DL N L++ Y K +L A F ++ +++ +S+ ++ GYA
Sbjct: 57 GKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E F + A+E F R+ + + N + +L + +LG IH
Sbjct: 116 ------ESVRFLE------AIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHA 163
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ + G + +FV +LID Y CG +
Sbjct: 164 CIFK----------------LGHESNAFVGTALIDAYSVCGRV 190
>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 833
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 179/637 (28%), Positives = 271/637 (42%), Gaps = 163/637 (25%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD TV I C L G QVH + G+ F+G
Sbjct: 229 PD--TVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDAN 286
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE+M ++V +W +M+ Y+ G +E+ ++LF ++++ ++ DV
Sbjct: 287 KVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLF------------GKMREEKIESDVVT 334
Query: 120 YMISIKFEGNACVKRPVLDMFIK-CG---RMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
+ I +D+F + CG R + + +++ L HGKE H + +
Sbjct: 335 WSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSV 394
Query: 176 K------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAGYAL 227
K +D DL V N+L+D YAKC+ L+VA F +I K + +V+W M+ GYA
Sbjct: 395 KFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYA- 453
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIH 285
Q+GD AL+ FS M + D + PN ++S VL ACA++ K GK+IH
Sbjct: 454 -----------QHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIH 502
Query: 286 GYVLRHH----------------IQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGA 328
YVLR S V A + + + V W SL+ YG G
Sbjct: 503 AYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHG- 561
Query: 329 IQKNEGWRYFEMMKKE----------------------YNMEPAMEQYCCMVDLLARAGQ 366
+ + +R F+ M+KE + ++P +E Y CMVDLL RAG+
Sbjct: 562 -RSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGMDFGVDPGVEHYACMVDLLGRAGR 620
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------- 409
+ + + MP EP+ C N ++AE AA+ L EL+ + G
Sbjct: 621 LGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNI 680
Query: 410 ------------------------------------VHSFIAGDTSHSLVHKISEKLMRL 433
+ +F GD +H KI E L L
Sbjct: 681 YANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADL 740
Query: 434 YSEIKKIGYMKRI-------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
IK + + HSEKLALA+ +++ PG+P+R+ KNLR+CGD HS
Sbjct: 741 IKRIKANFSLHDVDDEEKGDQLSEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAI 800
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y+S E EII+ D+ RFH F +G+CSC YW
Sbjct: 801 TYISMIV----EHEIILRDSSRFHQFKNGSCSCKGYW 833
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 80/343 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LC-AFLGMFEK----MPERNVF--- 71
T+ +F+ C +++N ELG +H +I G E +C A + M+ K + R VF
Sbjct: 128 TFPFVFKACGEISNFELGASIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDEL 187
Query: 72 ---------SWTSMMGMYN-------VLGYYEEIVNLFYLLIDE----GVYKACSELKDH 111
+W S++ +Y+ + + E+ + +L D + C L
Sbjct: 188 CYRGICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLG 247
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
G+ V+ + + + V ++DM+ KCG+ME A+ FE F
Sbjct: 248 LCGRQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRF------------- 294
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL----VSWNAMLAGYAL 227
D++ N+++ Y++ + A F K++++ + V+W+++++GYA
Sbjct: 295 ----------KDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVISGYAQ 344
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
GF G A++ F +M +PN ++L +L+ACA V GKE H Y
Sbjct: 345 RGF------------GCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCY 392
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
++ ++ ++ V N+LIDMY +C +++
Sbjct: 393 SVKFILKGEHNDDTDDLA---------VINALIDMYAKCKSLE 426
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 17/151 (11%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGYALGGFREEITGFT 238
L ++N L++ Y L + + I L+ N + ++ + + I
Sbjct: 43 LHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIRHAL 102
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+ TAL F RM P+ + V AC ++ F+LG IHG V+R
Sbjct: 103 HFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIR-------- 154
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
G + FV N++I MYG+C A+
Sbjct: 155 --------LGFESNVFVCNAVISMYGKCKAV 177
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 174/656 (26%), Positives = 272/656 (41%), Gaps = 225/656 (34%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM----------- 61
PD T++ + C ++ L LG Q H ++ G++L C+ + M
Sbjct: 143 PDRFTLSG--VVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVD 200
Query: 62 -----FEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLID----------EGVYKAC 105
F++MP NV SWT+++ G G E + LF ++ V KAC
Sbjct: 201 DARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKAC 260
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---- 158
+ L D +G+ VY ++ ++ CV ++ M+ +CG ME A F+ EK+
Sbjct: 261 ANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYN 320
Query: 159 -----------------------------------------SNLSLLKHGKEIHPHHLKK 177
S++ + G++IH LK
Sbjct: 321 TIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS 380
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+S+L + N+L+ Y++C ++ A F+++ +++SW +M ITGF
Sbjct: 381 G-FKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSM------------ITGF 427
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
++G ALE F +M++ + PN ++ VL+AC+ V
Sbjct: 428 AKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHV---------------------- 465
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
LIS EG ++F+ MK E+ + P ME Y C+
Sbjct: 466 ----GLIS---------------------------EGLKHFKSMKVEHGIVPRMEHYACV 494
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--- 404
VDLL R+G ++ + + MPF+ + C N D+ +HAA + E +P
Sbjct: 495 VDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDP 554
Query: 405 ----------LSSG------------------------------KVHSFIAGDTSHSLVH 424
S+G KVH F GDTSH
Sbjct: 555 AAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQ 614
Query: 425 KISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPG 467
+I ++L +L +IK++GY IP+ HSEK+A+A+G ISTS
Sbjct: 615 EIYDELDQLALKIKELGY---IPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTS 671
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV KNLR+CGDCH+ KY S R +EI++ D RFHHF DG CSC DYW
Sbjct: 672 RPIRVFKNLRVCGDCHTAFKYFSIV----RRKEIVLRDANRFHHFKDGTCSCNDYW 723
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 141/329 (42%), Gaps = 93/329 (28%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKDHRVGKD 116
+R++ SW++++ Y E ++ F+ +++ GV++ACS ++ +GK
Sbjct: 4 KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63
Query: 117 VYDYMISIK-FEGNACVKRPVLDMFIKCGRMEMASG--------------------EFEE 155
++ +++ FE + CV ++DMF+K G ++ S F++
Sbjct: 64 IFGFLLKTGYFESDVCVGCALIDMFVK-GNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122
Query: 156 KDFSN------------------------------LSLLKHGKEIHPHHLKKDDLESDLL 185
FS + LL G++ H + K L+ D+
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCL-VMKSGLDLDVC 181
Query: 186 VNNSLMDFYAKCRY---LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
V SL+D YAKC + A F ++ +++SW A++ GY G G
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSG-----------GC 230
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+E F M+Q ++PN + S VL ACA + LG++++ V++ +
Sbjct: 231 DREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK----------MR 280
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
L SI +G NSLI MY RCG ++
Sbjct: 281 LASINCVG------NSLISMYSRCGNMEN 303
>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
Length = 822
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 275/643 (42%), Gaps = 209/643 (32%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLGM-------------- 61
PD T++ + C +L ++ LG+Q+H+ + G+ + C G+
Sbjct: 252 PDRYTMSS--MISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMD 309
Query: 62 -----FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLIDEGV----------YKAC 105
FE+MP+ +V SWT+++ Y G E +++ LF +++E + K+C
Sbjct: 310 YANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSC 369
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF------------ 153
+ + DH G+ V+ ++I V ++ M+ + G ME A F
Sbjct: 370 ASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCI 429
Query: 154 -EEKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
E +DF +++ +L G+++H LK SD V+
Sbjct: 430 TEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKA-GFGSDRFVS 488
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y++C YL+ A F+++K ++++SW +M I+G ++G E AL
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDRNVISWTSM------------ISGLAKHGYAERAL 536
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F MI T ++PN ++ VL+AC+ V + GKE
Sbjct: 537 SLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE------------------------ 572
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
Y R ++Q++ G + P ME Y CMVDLLAR+G
Sbjct: 573 ---------------YFR--SMQRDHG------------LIPRMEHYACMVDLLARSGIV 603
Query: 368 DDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEP--------LSS-- 407
+ L F+ +MP + + C N ++ E A+++ ELEP LS+
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLY 663
Query: 408 ---------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLY 434
H F AGDTSH I KL L
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLV 723
Query: 435 SEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IK +GY +K HSEK+A+AFGLI+TS P+R+ KNLR+C
Sbjct: 724 RQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCA 783
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS KY+SKA + REII+ D+ RFH DG CSCG+YW
Sbjct: 784 DCHSAIKYMSKATR----REIILRDSNRFHRMKDGECSCGEYW 822
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 29/163 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V ++L+D A+ L A F + +K +V W +++ Y G EE
Sbjct: 186 TDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEE-------- 237
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+E F ++ +P+ ++S +++AC ++ +LG ++H LR
Sbjct: 238 ----AVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALR----------- 282
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-GWRYFEMMKK 343
GL + + V L+DMY + Q + + FE M K
Sbjct: 283 -----MGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPK 320
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAML 222
L+ G+ +H L+ D L+ D +V NSL+ Y++C + A F ++ + +VSW AM
Sbjct: 64 LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ A G +L M+++ + PN +L AC
Sbjct: 124 SCLARNGAE------------RGSLLLIGEMLESGLLPNAYTLCAAAHAC 161
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 155/539 (28%), Positives = 240/539 (44%), Gaps = 156/539 (28%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V KAC+ + GK ++Y+I + FE + V+ ++ M+ +CG +E A F++
Sbjct: 16 VVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMS--- 72
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
E N+++ +A+ R +K A F ++ ++ +VSW A
Sbjct: 73 --------------------ERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTA 112
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
++AGYA G+ G+ +L F++M +T M+ + + VL+ACA + +L
Sbjct: 113 VIAGYAQNGY------------GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALEL 160
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLID--- 321
G++ H YV++ L VG AL+ + +GS WNS+I
Sbjct: 161 GRQFHAYVVQSGFALDIVVGSALVDMYA-KSGSMEDACQVFDKMPQRNEVSWNSIITGCA 219
Query: 322 MYGR-----------------------CGAIQK-------NEGWRYFEMMKKEYNMEPAM 351
+GR G + NEG YF +M + Y + P +
Sbjct: 220 QHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDV 279
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
Y CM+DLL RAG D+ NF+ MP EP + C N ++A+ A HL
Sbjct: 280 SHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLG 339
Query: 402 LEPLSSG-------------------KV------------------------HSFIAGDT 418
+E +G KV H+F+AG+T
Sbjct: 340 MEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGET 399
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
SH + +I E L L ++K GY+ K + HSEKLA+AFG+I+T
Sbjct: 400 SHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINT 459
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+PG+ +RV KNLR+CGDCH+ K++S R+I++ D RFHHF DG CSCGDYW
Sbjct: 460 NPGTTIRVAKNLRVCGDCHTVIKFIS----LNFTRKIVVRDANRFHHFKDGRCSCGDYW 514
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
L +F +M ER+V SWT+++ Y GY +E +N+F + G V AC++L
Sbjct: 96 LKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADL 155
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
+G+ + Y++ F + V ++DM+ K G ME A F++
Sbjct: 156 AALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDK 202
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M+ ++PN +LS V+ ACA + + GK+ H Y+++ G +
Sbjct: 1 MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK----------------MGFESD 44
Query: 313 SFVWNSLIDMYGRCGAIQ 330
V +L+ MY RCG+++
Sbjct: 45 VVVQTALVHMYARCGSLE 62
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERN 69
+ C L LELG Q HA+++ G L +G +F+KMP+RN
Sbjct: 148 VLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRN 207
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
SW S++ G + V LF ++ G+
Sbjct: 208 EVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 189/699 (27%), Positives = 284/699 (40%), Gaps = 213/699 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCAFLG--- 60
PD VT I C +++G+ +H + G+ C +L
Sbjct: 246 PD--VVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQ 303
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSE 107
F K +NV SW +M+ +++ G E NL + +G V AC +
Sbjct: 304 MSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLD 363
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF-------------- 153
R K+++ Y F+ + + + + KCG + A F
Sbjct: 364 KLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNAL 422
Query: 154 ------------------------EEKDF----------SNLSLLKHGKEIHPHHLKKDD 179
++ D+ ++L L++GKEIH + L+ +
Sbjct: 423 IGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLR-NG 481
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
LE+D V SL+ Y C A F ++K K+LVSWNAM++GY+ G E
Sbjct: 482 LETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYE------ 535
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+L F + + +Q + I++ V AC+Q+ +LGKE HGYVL+ V
Sbjct: 536 ------SLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFV 589
Query: 300 GIALISI--------------QGLGTGSFV-WNSLI-------------DMYGR------ 325
G ++I + GL + WN++I ++Y R
Sbjct: 590 GCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQ 649
Query: 326 -------------CG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
CG A EG +YF+ M+ +EP +E Y C++D+LARAG+ DD L
Sbjct: 650 MPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDAL 709
Query: 372 NFMKKMPFEP------SSAEPCNP----DIAEHAARHLFELEP--------LSS------ 407
+ +MP E S C +I E A+ L ELEP LS+
Sbjct: 710 RLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLG 769
Query: 408 -----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
G+V+SF+ GD+ +I RL I
Sbjct: 770 KWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERIS 829
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+IGY + GHSEKLA++FGL+ T+ G+ LR+ KNLR+C DCH+
Sbjct: 830 EIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHN 889
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SKA EREI++ DN RFHHF DG CSC DYW
Sbjct: 890 AAKLISKA----VEREIVVRDNKRFHHFRDGLCSCCDYW 924
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 157/381 (41%), Gaps = 92/381 (24%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V+K L+ D PD T+ + + C + ++ LG +H +I G+ L F+G
Sbjct: 129 VVKVFMDLVSDTDF-QPD--NFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGN 185
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDEG-- 100
+F+ MPE N+ SW SM+ ++ G+ + +L +L +EG
Sbjct: 186 ALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLL 245
Query: 101 --------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152
+ C+ + +G ++ + + V ++ M+ KCG + A
Sbjct: 246 PDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMS 305
Query: 153 FEEKDFSNL--------------------SLLK----HGKEIH----------PHHLKKD 178
F + + N+ +LL+ G+E+ P L K
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365
Query: 179 DLES--------------DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
L S + ++N+ + YAKC L A F I K + SWNA++ G
Sbjct: 366 QLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGG 425
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+A Q GD AL +M + QP+ ++S +L ACA +K + GKEI
Sbjct: 426 HA------------QNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEI 473
Query: 285 HGYVLRHHIQLSTGVGIALIS 305
HGYVLR+ ++ VG +L+S
Sbjct: 474 HGYVLRNGLETDFFVGTSLLS 494
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 38/228 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
++ G+ +H +D ++N L+ YA C + F ++ K+L+ WNA+++
Sbjct: 59 IETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVS 118
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY G YGD F + TD QP+ + V+ AC + +LG+
Sbjct: 119 GYTRNGL---------YGD--VVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEV 167
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
IHG V++ GL FV N+L+ MYG+CGA+ +E + F+ M
Sbjct: 168 IHGMVIK----------------MGLVLDVFVGNALVGMYGKCGAV--DEAMKVFDFMP- 208
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI 391
E + + M+ + G D+ + + +M E E PD+
Sbjct: 209 ----ETNLVSWNSMICAFSENGFSRDSFDLLMEMLGE----EGLLPDV 248
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/387 (18%), Positives = 140/387 (36%), Gaps = 122/387 (31%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHL--------------------IVCGVELCAFLGMFEKM 65
L+ Q C ++E G ++H + +CG L + L +F+ M
Sbjct: 47 GLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRL-VFDNM 105
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRVG 114
+N+ W +++ Y G Y ++V +F L+ + V KAC + D R+G
Sbjct: 106 ETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG 165
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
+ ++ +I + VLD+F
Sbjct: 166 EVIHGMVIKMGL---------VLDVF---------------------------------- 182
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
V N+L+ Y KC + A F + + +LVSWN+M+ ++ GF +
Sbjct: 183 -----------VGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRD- 230
Query: 235 TGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ + M+ + + P+ +++ +L CA +G IHG ++
Sbjct: 231 -----------SFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVK--- 276
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
GL V N+++ MY +CG + + + M N +
Sbjct: 277 -------------LGLSEEVMVNNAMVYMYSKCGYLNEAQ-------MSFVKNNNKNVVS 316
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ M+ + G ++ N +++M +
Sbjct: 317 WNTMISAFSLEGDVNEAFNLLQEMQIQ 343
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 168/603 (27%), Positives = 264/603 (43%), Gaps = 169/603 (28%)
Query: 51 CGVELCAFLGMFEKMP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
C E+ L EK E N+ SW ++ +N GY++E V +F + G
Sbjct: 197 CLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVS 256
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
V + + ++ +G+ ++ Y+I + CV +LDM+ K G + F+E
Sbjct: 257 SVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDE---- 312
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK----HL 215
+++ G V N+ + ++ + A F K++ ++
Sbjct: 313 -FEMMETG------------------VCNAYITGLSRNGLVDKALEMFGLFKEQKMELNV 353
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSW +++AG A Q G ALE F M ++PN +++ +L AC +
Sbjct: 354 VSWTSIIAGCA------------QNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNI 401
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLI 320
G+ HG+ +R H+ VG ALI + + T + V WNSL+
Sbjct: 402 AALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLM 461
Query: 321 D---MYGR-----------------------------CGAIQ-KNEGWRYFEMMKKEYNM 347
+ M+G+ CG + +EGW+YF MM +EY +
Sbjct: 462 NGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGI 521
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
+P +E Y CMV+LL RAG+ + + +K++PFEP S C N D+AE AA+
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQ 581
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
LF LEP + G KV++ +
Sbjct: 582 KLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLL 641
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
A D SH + +I+EK+ + E++K G+ + GHSEKLA+ FG
Sbjct: 642 ACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFG 701
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
L++T G+PL+VIKNLR+CGDCH+ K++S REI + D RFHHF DG CSCG
Sbjct: 702 LLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAG----REIFIRDTNRFHHFKDGICSCG 757
Query: 521 DYW 523
D+W
Sbjct: 758 DFW 760
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 29/159 (18%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
F I T+ ++ FSRM + P+T L + CA++ FK GK+IH
Sbjct: 84 FSSLIYALTKAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIH---- 139
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ + GL +FV SL MY RCG + + + F+ M ++
Sbjct: 140 ------------CVACVSGLDMDAFVQGSLFHMYMRCGRM--GDARKVFDRMSEK----- 180
Query: 350 AMEQYCCMVDL--LARAGQFDDTLNFMKKMPFEPSSAEP 386
+ C L AR G ++ + + +M E S EP
Sbjct: 181 --DVVTCSALLCGYARKGCLEEVVRILSEM--EKSGIEP 215
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 273/646 (42%), Gaps = 195/646 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG---------------- 60
PDE T++ L C L L G ++HA+ + G ++ +F+G
Sbjct: 300 PDEFTISSVL--PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+ M +R + W +M+ Y+ + +E + LF G+ ++ L + V
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI-----GMEESAGLLANSTTMAGVV 412
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
ACV+ SG F K+ + ++K G
Sbjct: 413 P----------ACVR----------------SGAFSRKEAIHGFVVKRG----------- 435
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V N+LMD Y++ + +A F K++ + LV+WN M+ GY E+
Sbjct: 436 -LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 239 QYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ R + + ++PN+I+L +L +CA + GKEIH Y +++++
Sbjct: 495 H------KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------- 331
VG AL+ + Q WN +I YG G Q+
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG R F +MK +Y +EP+ + Y C+VDLL RAG
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668
Query: 366 QFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEHAARHLFELEP---------- 404
+ + M MP F + A N +I E AA++L +LEP
Sbjct: 669 RIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLA 728
Query: 405 ---LSSG------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
S+G +VH F+AGD+SH K+S L
Sbjct: 729 NIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 788
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L+ ++K GY+ K I CGHSEKLA+AFG+++TSPG+ +RV KNLR
Sbjct: 789 TLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLR 848
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFH F +G CSCGDYW
Sbjct: 849 VCNDCHLATKFISKIV----DREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 152/392 (38%), Gaps = 110/392 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------------ELCAF 58
PD + + + L ++ELG Q+HAH+ G + A
Sbjct: 95 PD--NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F+++ ERN SW S++ +E + F ++DE V ACS L
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 109 ---KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF---- 158
+ +GK V+ Y + K E N+ + ++ M+ K G++ + G F +D
Sbjct: 213 PMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 159 -----------------------------------------SNLSLLKHGKEIHPHHLKK 177
S+L +L+ GKE+H + LK
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V ++L+D Y C+ + F + + + WNAM+AGY+
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS----------- 380
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
D E L F + N+ +++GV+ AC + F + IHG+V++
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK------- 433
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GL FV N+L+DMY R G I
Sbjct: 434 ---------RGLDRDRFVQNTLMDMYSRLGKI 456
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L ++ GK+IH H K + V N+L++ Y KC + F +I +++
Sbjct: 105 KAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 164
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+ + E ALE F M+ +++P++ +L V+ AC+ +
Sbjct: 165 VSWNSL------------ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+G +GK++H Y LR SF+ N+L+ MYG+ G + +
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-----------------ELNSFIINTLVAMYGKLGKLASS 255
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+++ + + + ++ L + Q + L ++++M E +
Sbjct: 256 ------KVLLGSFGGRD-LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH 451
A H LE L +GK +H++ + S + L+ +Y K++ +R+
Sbjct: 309 LPACSH---LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 452 SEKLALAFGLIS 463
K+ L +I+
Sbjct: 366 DRKIGLWNAMIA 377
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 273/646 (42%), Gaps = 195/646 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG---------------- 60
PDE T++ L C L L G ++HA+ + G ++ +F+G
Sbjct: 213 PDEFTISSVL--PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 270
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+ M +R + W +M+ Y+ + +E + LF G+ ++ L + V
Sbjct: 271 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI-----GMEESAGLLANSTTMAGVV 325
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
ACV+ SG F K+ + ++K G
Sbjct: 326 P----------ACVR----------------SGAFSRKEAIHGFVVKRG----------- 348
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V N+LMD Y++ + +A F K++ + LV+WN M+ GY E+
Sbjct: 349 -LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 407
Query: 239 QYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ R + + ++PN+I+L +L +CA + GKEIH Y +++++
Sbjct: 408 H------KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 461
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------- 331
VG AL+ + Q WN +I YG G Q+
Sbjct: 462 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 521
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG R F +MK +Y +EP+ + Y C+VDLL RAG
Sbjct: 522 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 581
Query: 366 QFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEHAARHLFELEP---------- 404
+ + M MP F + A N +I E AA++L +LEP
Sbjct: 582 RIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLA 641
Query: 405 ---LSSG------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
S+G +VH F+AGD+SH K+S L
Sbjct: 642 NIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 701
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L+ ++K GY+ K I CGHSEKLA+AFG+++TSPG+ +RV KNLR
Sbjct: 702 TLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLR 761
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFH F +G CSCGDYW
Sbjct: 762 VCNDCHLATKFISKI----VDREIILRDVRRFHRFKNGTCSCGDYW 803
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 152/392 (38%), Gaps = 110/392 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------------ELCAF 58
PD + + + L ++ELG Q+HAH+ G + A
Sbjct: 8 PD--NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F+++ ERN SW S++ +E + F ++DE V ACS L
Sbjct: 66 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125
Query: 109 ---KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF---- 158
+ +GK V+ Y + K E N+ + ++ M+ K G++ + G F +D
Sbjct: 126 PMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 184
Query: 159 -----------------------------------------SNLSLLKHGKEIHPHHLKK 177
S+L +L+ GKE+H + LK
Sbjct: 185 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 244
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V ++L+D Y C+ + F + + + WNAM+AGY+
Sbjct: 245 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS----------- 293
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
D E L F + N+ +++GV+ AC + F + IHG+V++
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK------- 346
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GL FV N+L+DMY R G I
Sbjct: 347 ---------RGLDRDRFVQNTLMDMYSRLGKI 369
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L ++ GK+IH H K + V N+L++ Y KC + F +I +++
Sbjct: 18 KAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 77
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+ + E ALE F M+ +++P++ +L V+ AC+ +
Sbjct: 78 VSWNSL------------ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+G +GK++H Y LR SF+ N+L+ MYG+ G + +
Sbjct: 126 PMPEGLMMGKQVHAYGLRKG-----------------ELNSFIINTLVAMYGKLGKLASS 168
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+++ + + + ++ L + Q + L ++++M E +
Sbjct: 169 ------KVLLGSFGGRD-LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 221
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH 451
A H LE L +GK +H++ + S + L+ +Y K++ +R+
Sbjct: 222 LPACSH---LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 278
Query: 452 SEKLALAFGLIS 463
K+ L +I+
Sbjct: 279 DRKIGLWNAMIA 290
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 149/486 (30%), Positives = 215/486 (44%), Gaps = 132/486 (27%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K + LS L+ GK IH HL +DL V+ +L+D YAKC ++ A F K+
Sbjct: 823 FALKSCAGLSDLQRGKVIH-QHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ LVSW +M++GYA G+ E GF F M + + PN +S+ VL AC
Sbjct: 882 RDLVSWTSMISGYAHNGYNSETLGF------------FDLMRSSGVIPNRVSILSVLLAC 929
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWN 317
+ + G+ H YV++ + V A++ + + G W+
Sbjct: 930 GNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWS 989
Query: 318 SLIDMYGRCGAIQK---------------------------------NEGWRYFEMMKKE 344
++I YG G +K EG YF++M +E
Sbjct: 990 AMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEE 1049
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEH 394
+ + + Y CMVDLL RAGQ + ++ ++ MP EP ++ C N D+AE
Sbjct: 1050 FVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEK 1109
Query: 395 AARHLFELEPLSSG-------------------------------------------KVH 411
A HLF L+P+ +G +VH
Sbjct: 1110 IADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVH 1169
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLAL 457
F GD SH K+ KL L + +K +GY+ K HSE+LA+
Sbjct: 1170 KFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAI 1229
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFGLI+TSPG+ LR+ KNLR+CGDCH+ K +SK R I++ D +RFH F DG C
Sbjct: 1230 AFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVN----RVILVRDMHRFHRFEDGVC 1285
Query: 518 SCGDYW 523
SCGDYW
Sbjct: 1286 SCGDYW 1291
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 144/624 (23%), Positives = 238/624 (38%), Gaps = 199/624 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVH----------AHLIV----------CGVELCA 57
PD T+ AL + C L LELG +H + + V CG ++
Sbjct: 101 PDNFTIPIAL--KACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCG-QMGE 157
Query: 58 FLGMFEKMPERNVFSWTSMMGMYN-------VLGYYEEIVNLFYLLIDE----GVYKACS 106
L +FE+ + WTSM+ Y L + ++V + +++D V AC+
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACA 217
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSL 163
+L + + G V+ +I +F+G+ + +L+++ K G ++A+ F EKD + S
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 277
Query: 164 ---------------------------------------------LKHGKEIHPHHLKKD 178
L+ GK+IH + K
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
E D V+ +L+D Y KC A F ++ +K +VSW A+L+GYA
Sbjct: 338 -FELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYA------------ 384
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q G ++ F M+ +QP+ +++ +LAA +++ F+ +HGYV+R +
Sbjct: 385 QNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVF 444
Query: 299 VGIALISI----QGLGTG-----------SFVWNSLIDMYGRCG---------------- 327
VG +LI + LG +W+S+I YG G
Sbjct: 445 VGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNS 504
Query: 328 AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ N EG + F+ M +Y + P E + MVDLL R GQ
Sbjct: 505 TVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGK 564
Query: 370 TLNFMKKMPFEPSSAE-------PC----NPDIAEHAARHLFELEP--------LSS--- 407
++ + +MP P+ C N ++ E AA++LF L+P LS+
Sbjct: 565 AMDIINRMPI-PAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYA 623
Query: 408 --------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYS 435
G VHSF+A D H KI E L +L +
Sbjct: 624 VDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEA 683
Query: 436 EIKKIGYMKRIPACGHSEKLALAF 459
++ K Y+ + H L F
Sbjct: 684 QMGKEVYIPDLDFLLHDTGAVLQF 707
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 84/312 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F++ P NV W S + Y +EE + LF+L+I KAC+ L+
Sbjct: 58 VFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLR 117
Query: 110 DHRVGKDVY------DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------ 157
+GK ++ D + S F G+A V +++ KCG+M A FEE
Sbjct: 118 MLELGKVIHGFAKKNDEIGSDMFVGSALV-----ELYSKCGQMGEALKVFEEFQRPDTVL 172
Query: 158 --------------------FSNLSLL-----------------------KHGKEIHPHH 174
FS + ++ K G +H
Sbjct: 173 WTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLV 232
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+++ + + DL + NSL++ YAK K+A FSK+ +K ++SW+ M+A YA E
Sbjct: 233 IRR-EFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANE- 290
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL F MI+ +PN++++ L ACA + + GK+IH + +
Sbjct: 291 -----------ALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFE 339
Query: 295 LSTGVGIALISI 306
L V ALI +
Sbjct: 340 LDFSVSTALIDM 351
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 33/194 (17%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG------ 60
PD+ +AL + C L++L+ G +H HL+ CG V++ A G
Sbjct: 816 PDKFAFPFAL--KSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAAR 873
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELK 109
+F+KM R++ SWTSM+ Y GY E + F L+ GV AC L
Sbjct: 874 LVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLG 933
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDFSNLSLLKH 166
R G+ + Y+I FE + V ++DM+ KCG +++A F+E KD S +
Sbjct: 934 ALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIA 993
Query: 167 GKEIHPHHLKKDDL 180
IH H K DL
Sbjct: 994 SYGIHGHGRKAIDL 1007
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 165 KHGKEIHPHHLK--KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+G+ + H + K + D L YAKC L+ A F + ++ WN+ L
Sbjct: 15 NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLG 281
Y RE+ E L F MI T + P+ ++ L ACA ++ +LG
Sbjct: 75 RSYC----REK--------QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
K IHG+ ++ +G+ FV ++L+++Y +CG Q E + FE
Sbjct: 123 KVIHGFAKKN---------------DEIGSDMFVGSALVELYSKCG--QMGEALKVFEEF 165
Query: 342 KK 343
++
Sbjct: 166 QR 167
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 30/150 (20%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+S +L ++M Y + A F I WN M I GF
Sbjct: 751 DSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVM------------IRGFATD 796
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G ++LE +S+M++ ++P+ + L +CA + + GK IH +++
Sbjct: 797 GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV----------- 845
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G FV +L+DMY +CG I+
Sbjct: 846 -----CCGCSNDLFVDAALVDMYAKCGDIE 870
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 194/706 (27%), Positives = 287/706 (40%), Gaps = 195/706 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKL-NNLELGIQVHAHLIVCG----------VELCA 57
L + M L N + T + C L N L LG QVHA ++ G V + A
Sbjct: 173 LFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYA 232
Query: 58 FLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
LG +F+ ++++ SW +++ + +EE + ++++ GV
Sbjct: 233 KLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLAS 292
Query: 102 -YKACSELKDHRVGKDVYDY------MISIKFEGNACV------KRP-----VLD-MF-- 140
ACS L+ GK+++ + +I F G A V K+P V D MF
Sbjct: 293 VLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRR 352
Query: 141 -IKCGRMEMASGEFEEKDFSNLSLLKH----------------------------GKEIH 171
I +A E D+ + L KE
Sbjct: 353 TIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGI 412
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K E D V N+LMD Y++ +++A F + +K +VSWN M+ GY + G
Sbjct: 413 HSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRH 472
Query: 232 EEITGF---TQYGDGETALEFFSRMIQTD---MQPNTISLSGVLAACAQVKGFKLGKEIH 285
++ Q G E + F ++PN+++L VL CA + GKEIH
Sbjct: 473 DDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIH 532
Query: 286 GYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQ 330
Y ++ + VG AL+ + Q WN LI YG G +
Sbjct: 533 AYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGE 592
Query: 331 K--------------------------------------NEGWRYFEMMKKEYNMEPAME 352
+ +EG F MK ++ +EP +
Sbjct: 593 EALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSD 652
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFE 401
Y C+VDLL R+GQ ++ N +K MP + N +I E AA++LF
Sbjct: 653 HYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFV 712
Query: 402 LEP--LSSG----------------------------KVHSFIAGDTSHSLVHKISEKLM 431
L+P L G +VH F+AGD SH ++ E L
Sbjct: 713 LDPNVLDYGTKQSMLGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLE 772
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L +KK GY+ K CGHSE+LA+AFGL++TSPG+ +RV KNLR
Sbjct: 773 TLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLR 832
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFHHF +G CSCGDYW
Sbjct: 833 VCNDCHVATKFISKI----VDREIILRDVRRFHHFRNGTCSCGDYW 874
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 46/255 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK++H H K V NSL++ Y KC + A F +I + VSWN+M
Sbjct: 101 LNLGKQLHAHVFKFGQ-ALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSM-- 157
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLGK 282
I ++ + E A+ F M+ ++ P + +L V AC+ + G LGK
Sbjct: 158 ----------INAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGK 207
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H +VLR+ +F N+L+ MY + G + E F++
Sbjct: 208 QVHAFVLRNG-----------------DWRTFTNNALVTMYAKLGRVY--EAKTLFDVFD 248
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE--HAARHLF 400
+ + + ++ L++ +F++ L ++ M S P +A A H
Sbjct: 249 -----DKDLVSWNTIISSLSQNDRFEEALLYLHVML--QSGVRPNGVTLASVLPACSH-- 299
Query: 401 ELEPLSSGK-VHSFI 414
LE L GK +H+F+
Sbjct: 300 -LEMLGCGKEIHAFV 313
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A+ ++ M+ + P+ + VL A A ++ LGK++H +V + L T V
Sbjct: 69 AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVP----- 123
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
NSL++MYG+CG I + R F+ + ++ + M++ R
Sbjct: 124 -----------NSLVNMYGKCGDI--DAARRVFDEITNRDDV-----SWNSMINAACRFE 165
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFI--AGD----T 418
+++ ++ + M E HA +L + L GK VH+F+ GD T
Sbjct: 166 EWELAVHLFRLMLLENVGPTSFTLVSVAHACSNL--INGLLLGKQVHAFVLRNGDWRTFT 223
Query: 419 SHSLVHKISEKLMRLY 434
+++LV + KL R+Y
Sbjct: 224 NNALV-TMYAKLGRVY 238
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 183/650 (28%), Positives = 266/650 (40%), Gaps = 217/650 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL--------------IVCGVELCAFL---- 59
PD + T++ + + C +LN LG+ +H+ + +VC C FL
Sbjct: 102 PD--SFTFSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAW 159
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F+ M +NV SWT M+ G + E V+LF L++ G V +AC+ L
Sbjct: 160 KVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLG 219
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
D G+ + + C++ +CG
Sbjct: 220 DLESGRWI-----------DRCMR--------ECG------------------------- 235
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
L ++ V SL+D Y KC ++ A F + +K +V W+AM+ GYA G
Sbjct: 236 ----------LSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNG 285
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
E A+E F M + +++P+ ++ G L++CA + +LG G +
Sbjct: 286 LPRE------------AIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMN 333
Query: 290 RHHIQLSTGVGIALISI--------QGLGT-------GSFVWNSLID---MYGRCGA--- 328
+ +G +LI + LG V+N++I MYG+ GA
Sbjct: 334 YEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFG 393
Query: 329 ---------IQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
I NE G YF M ++++ P +E Y CMVDLL
Sbjct: 394 VFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLL 453
Query: 362 ARAGQFDDTLNFMKKMPFEP------SSAEPCN----PDIAEHAARHLFELEPLSSGK-- 409
ARAG D+ N +K MP + S C +AEH + L ELEP +SG
Sbjct: 454 ARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYV 513
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
VH F+ GDTSH L KI E
Sbjct: 514 LLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYE 573
Query: 429 KLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFGLISTSPGSPLRVI 473
KL L+ ++K+ GY + C HSEKLA+AF LIST +RV+
Sbjct: 574 KLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGC-HSEKLAVAFALISTGAKYVIRVV 632
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH K++SK REI++ DN RFH F DGACSC DYW
Sbjct: 633 KNLRVCGDCHEAIKHISKVTG----REIVIRDNNRFHCFSDGACSCRDYW 678
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 39/188 (20%)
Query: 159 SNLSLLKHGKEIHPHHLK-----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
S L LKH K H L+ +DL S +L S ++F +Y + K
Sbjct: 12 SGLKCLKHAKLAHCRLLRLNLHHDNDLLSIIL--RSTINFSNNAQYPILVFHKTPTNSNT 69
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
L +N M I G A+ ++ M + + P++ + S VL ACA
Sbjct: 70 FL--YNTM------------IRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACA 115
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++ F LG IH V + G FV +++ Y +CG ++ +
Sbjct: 116 RLNLFHLGVMIHSLVFK----------------TGFDCDVFVKTNVVCFYSKCGFLR--D 157
Query: 334 GWRYFEMM 341
W+ F+ M
Sbjct: 158 AWKVFDDM 165
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 273/646 (42%), Gaps = 195/646 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG---------------- 60
PDE T++ L C L L G ++HA+ + G ++ +F+G
Sbjct: 300 PDEFTISSVL--PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+ M +R + W +M+ Y+ + +E + LF G+ ++ L + V
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI-----GMEESAGLLANSTTMAGVV 412
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
ACV+ SG F K+ + ++K G
Sbjct: 413 P----------ACVR----------------SGAFSRKEAIHGFVVKRG----------- 435
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V N+LMD Y++ + +A F K++ + LV+WN M+ GY E+
Sbjct: 436 -LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 239 QYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ R + + ++PN+I+L +L +CA + GKEIH Y +++++
Sbjct: 495 H------KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------- 331
VG AL+ + Q WN +I YG G Q+
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG R F +MK +Y +EP+ + Y C+VDLL RAG
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668
Query: 366 QFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEHAARHLFELEP---------- 404
+ + M MP F + A N +I E AA++L +LEP
Sbjct: 669 RIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLA 728
Query: 405 ---LSSG------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
S+G +VH F+AGD+SH K+S L
Sbjct: 729 NIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 788
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L+ ++K GY+ K I CGHSEKLA+AFG+++TSPG+ +RV KNLR
Sbjct: 789 TLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLR 848
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFH F +G CSCGDYW
Sbjct: 849 VCNDCHLATKFISKIV----DREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 152/392 (38%), Gaps = 110/392 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------------ELCAF 58
PD + + + L ++ELG Q+HAH+ G + A
Sbjct: 95 PD--NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F+++ ERN SW S++ +E + F ++DE V ACS L
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 109 ---KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF---- 158
+ +GK V+ Y + K E N+ + ++ M+ K G++ + G F +D
Sbjct: 213 PMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 159 -----------------------------------------SNLSLLKHGKEIHPHHLKK 177
S+L +L+ GKE+H + LK
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V ++L+D Y C+ + F + + + WNAM+AGY+
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS----------- 380
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
D E L F + N+ +++GV+ AC + F + IHG+V++
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK------- 433
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GL FV N+L+DMY R G I
Sbjct: 434 ---------RGLDRDRFVQNTLMDMYSRLGKI 456
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L ++ GK+IH H K + V N+L++ Y KC + F +I +++
Sbjct: 105 KAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 164
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+ + E ALE F M+ +++P++ +L V+ AC+ +
Sbjct: 165 VSWNSL------------ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+G +GK++H Y LR SF+ N+L+ MYG+ G + +
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-----------------ELNSFIINTLVAMYGKLGKLASS 255
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+++ + + + ++ L + Q + L ++++M E +
Sbjct: 256 ------KVLLGSFGGRD-LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH 451
A H LE L +GK +H++ + S + L+ +Y K++ +R+
Sbjct: 309 LPACSH---LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 452 SEKLALAFGLIS 463
K+ L +I+
Sbjct: 366 DRKIGLWNAMIA 377
>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
Length = 920
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 176/643 (27%), Positives = 256/643 (39%), Gaps = 213/643 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY I + C +ELG Q+H+ I G E ++ + E +
Sbjct: 348 TYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEML 407
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGK 115
+R+V SWTSM+ Y + EE + F + D GV+ AC+ +K R G
Sbjct: 408 EKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGL 467
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEKD--------------- 157
++ + + + + +++++ +CGR E A E E KD
Sbjct: 468 QIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSR 527
Query: 158 ------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+NL+ +K GK++H +K S+ V
Sbjct: 528 LYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGH-TSETEVA 586
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ Y KC ++ A FS++ ++ VSWN + IT +Q+G G AL
Sbjct: 587 NALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTI------------ITSCSQHGRGLEAL 634
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F +M Q ++PN ++ GVLAAC+ VG+
Sbjct: 635 DLFDQMKQEGLKPNDVTFIGVLAACSH------------------------VGLV----- 665
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG YF+ M Y + P + Y C+VD+L RAGQ
Sbjct: 666 ------------------------EEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQL 701
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
D F+ +MP ++ C N +I E AA+HL ELEP S
Sbjct: 702 DRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAY 761
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F GD H L +I + L L
Sbjct: 762 AVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELN 821
Query: 435 SEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ KIGY + P A HSEKLA+AFGL++ P PLRVIKNLR+C
Sbjct: 822 DRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCD 881
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K S+ + REI++ D YRFHHF G+CSCGDYW
Sbjct: 882 DCHSWMKCTSEVTR----REIVLRDVYRFHHFNSGSCSCGDYW 920
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH + + L +D L+ N L+D YAK + A F ++ + VSW AML+GYA
Sbjct: 64 EIHATSVVRG-LGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYA-- 120
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G G+ A +S+M T + P LS VL+AC + K F G+ IH V
Sbjct: 121 ----------QSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQV 170
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
+ T VG ALI++ LG GSF +N+LI + +CG
Sbjct: 171 YKQAFCSETFVGNALIALY-LGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 131/342 (38%), Gaps = 89/342 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKD 110
+F+++ R+ SW +M+ Y G +E L+ + + V AC++ K
Sbjct: 100 VFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKL 159
Query: 111 HRVGKDVY-----DYMISIKFEGNACV------------KRPVLDMFI------------ 141
G+ ++ S F GNA + +R DM
Sbjct: 160 FAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISG 219
Query: 142 --KCGRMEMASGEFEEKDFSNL--------SLL---------KHGKEIHPHHLKKDDLES 182
+CG E A F+E S L SLL + GK++H + LK +
Sbjct: 220 HAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAG-MSF 278
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + SL+D Y KC ++ AH F+ + ++V WN ML Y Q D
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG------------QISD 326
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ E F +M T + PN + +L C +LG++IH +++
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKN----------- 375
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
G + +V LIDMY + G + K + EM++K
Sbjct: 376 -----GFESDMYVSGVLIDMYSKYGCLDKAR--KILEMLEKR 410
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 179/677 (26%), Positives = 272/677 (40%), Gaps = 192/677 (28%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL----- 59
L + M + T T + Q C K+ L Q+H ++ G V LC L
Sbjct: 762 LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYS 821
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+ M RN SW SM+ Y LG+ + +LFY EL+
Sbjct: 822 KNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY------------ELES 869
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----RMEMASGEFEEKDFSNLSLLKH 166
+ D+ + + K VL++ + + +S + S L L
Sbjct: 870 SDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNM 929
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GKE H + L+ + + D+ V SL+D Y K L A F +K +++ +WN++++GY+
Sbjct: 930 GKETHGYVLR-NGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYS 988
Query: 227 LGGFREE-----------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
G E+ I+G+ +G A PN+
Sbjct: 989 FKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF-----------MPNSA 1037
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRH------------------------------HI 293
S++ +L ACA + + GKEIH +R+ I
Sbjct: 1038 SITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRI 1097
Query: 294 QLST--------------GVGIALISI------QGLGTGSFVWNSLIDMYGRCGAIQKNE 333
Q T G+G IS+ G+G + + +L+ G I E
Sbjct: 1098 QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI--GE 1155
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC 387
GW+YF+ M +Y + P +E YCCMVDLL RAG D+ + + MP +P + C
Sbjct: 1156 GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSC 1215
Query: 388 ----NPDIAEHAARHLFELEPLSSG----------------------------------- 408
N AE AA++LF+LEP +S
Sbjct: 1216 RIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQV 1275
Query: 409 --------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRI 446
+VH F + + H KI +L +L SE+KK+GY+ K+
Sbjct: 1276 WSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQK 1335
Query: 447 PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
H+EKLA+ +GLI G P+RVIKN R+C DCHS KY+S + RE+ + D
Sbjct: 1336 ILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLV----KARELFLRDG 1391
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF +G CSC D+W
Sbjct: 1392 VRFHHFREGKCSCNDFW 1408
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 160/389 (41%), Gaps = 85/389 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLG-------------MFEKM 65
Y++ + C ++ ++ LG+++H LI G +L CA + +F +M
Sbjct: 676 VYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEM 735
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDEG----VYKACSELKDHRVGK 115
P W + + ++ V LF +L + V +AC ++ K
Sbjct: 736 PNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAK 795
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++ Y+ + + + P++ M+ K G++E+A F+ + N S
Sbjct: 796 QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW----------- 844
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFR 231
NS++ YA +L A F +++ + +V+WN +L+G+ L G++
Sbjct: 845 ------------NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYK 892
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
EE+ Q GE +PN+ S++ VL A +++ +GKE HGYVLR+
Sbjct: 893 EEVLNILQRMQGE------------GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 940
Query: 292 HIQLSTGVGIALI----------SIQGL-----GTGSFVWNSLIDMYGRCGAIQKNEGWR 336
VG +LI S Q + F WNSL+ Y G + + R
Sbjct: 941 GFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE--DALR 998
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
M+KE ++P + + M+ A G
Sbjct: 999 LLNQMEKE-GIKPDLVTWNGMISGYAMWG 1026
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Glycine max]
Length = 1047
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 174/658 (26%), Positives = 267/658 (40%), Gaps = 213/658 (32%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---------- 58
+ M + + TY I + C L ++LG Q+H ++ G + +
Sbjct: 460 IFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA 519
Query: 59 --------LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------- 103
L +F ++ E++V SWT+M+ Y + E +NLF + D+G++
Sbjct: 520 KLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFAS 579
Query: 104 ---ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC+ ++ G+ ++ + + V ++ ++ +CG++ A F++ KD
Sbjct: 580 AISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKD 639
Query: 158 -----------------------FSNLS----------------------LLKHGKEIHP 172
FS +S +K GK+IH
Sbjct: 640 NISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHA 699
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+K +S+ V+N L+ YAKC + A +F ++ +K+ +SWNAML
Sbjct: 700 MIIKTGH-DSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAML---------- 748
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
TG++Q+G G AL F M Q + PN ++ GVL+AC+ V
Sbjct: 749 --TGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHV----------------- 789
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
L+D EG +YF+ M++ + + P E
Sbjct: 790 -------------------------GLVD-----------EGIKYFQSMREVHGLVPKPE 813
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y C+VDLL R+G F+++MP +P + C N DI E AA HL EL
Sbjct: 814 HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
EP S VH+F AGD
Sbjct: 874 EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLISTS 465
H V KI E L L + GY+ + + HSEKLA+AFGL+S S
Sbjct: 934 HPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLS 993
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+P+ V KNLR+CGDCH+ KYVSK +R I++ D+YRFHHF G CSC DYW
Sbjct: 994 SSTPIHVFKNLRVCGDCHNWIKYVSKIS----DRVIVVRDSYRFHHFKGGICSCKDYW 1047
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/375 (21%), Positives = 153/375 (40%), Gaps = 94/375 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F+ + +R+ SW +M+ + G EE V LF + GVY AC++++
Sbjct: 227 VFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF------EEKDFSNL--- 161
++VG+ ++ ++ F V ++ ++ + G A F +E +++L
Sbjct: 287 YKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISG 346
Query: 162 ------------------------------SLLKH---------GKEIHPHHLKKDDLES 182
SLL GK+ H + +K + S
Sbjct: 347 LSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAG-MSS 405
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+++ +L+D Y KC +K AH F + +++V WN ML Y L E
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNE--------- 456
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ + F++M ++PN + +L C+ ++ LG++IH VL+ Q +
Sbjct: 457 ---SFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNV----- 508
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+V + LIDMY + G + + + F +K E + + M+ A
Sbjct: 509 -----------YVSSVLIDMYAKLGKL--DHALKIFRRLK-----EKDVVSWTAMIAGYA 550
Query: 363 RAGQFDDTLNFMKKM 377
+ +F + LN K+M
Sbjct: 551 QHEKFAEALNLFKEM 565
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/429 (21%), Positives = 172/429 (40%), Gaps = 112/429 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLI---------VCG--VELCAFLG-------MFEKMP 66
++ + C K+ ++G Q+H ++ VC V L + LG +F M
Sbjct: 274 FSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAML 333
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLID---------EGVYKACSELKDHRVGKD 116
+R+ S+ S++ + GY ++ + LF + +D + ACS + VGK
Sbjct: 334 QRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ 393
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------------- 153
+ Y I + ++ +LD+++KC ++ A F
Sbjct: 394 FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN 453
Query: 154 ----------------EEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNN 188
E F+ S+L+ G++IH LK + ++ V++
Sbjct: 454 LNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSS 512
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D YAK L A F ++K+K +VSW AM+AGYA Q+ AL
Sbjct: 513 VLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYA------------QHEKFAEALN 560
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M + + I + ++ACA ++ G++IH A + G
Sbjct: 561 LFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH----------------AQACVSG 604
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
V N+L+ +Y RCG ++ + + F+ + + N+ + ++ A++G +
Sbjct: 605 YSDDLSVGNALVSLYARCGKVR--DAYFAFDKIFSKDNIS-----WNSLISGFAQSGHCE 657
Query: 369 DTLNFMKKM 377
+ L+ +M
Sbjct: 658 EALSLFSQM 666
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 35/197 (17%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E+ L V N L+D Y K +L A F ++++ VSW AML+G + G EE
Sbjct: 202 ENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEE------- 254
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ F +M + + P S VL+AC +V+ +K+G+++HG VL+
Sbjct: 255 -----AVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLK---------- 299
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
QG ++V N+L+ +Y R G E + F M + + Y ++
Sbjct: 300 ------QGFSLETYVCNALVTLYSRLGNFIPAE--QVFNAMLQRDEVS-----YNSLISG 346
Query: 361 LARAGQFDDTLNFMKKM 377
L++ G D L KKM
Sbjct: 347 LSQQGYSDKALELFKKM 363
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 31/164 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+++++ LMD Y L A F ++ + L WN +L + G + G
Sbjct: 101 AEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGL---- 156
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK-GFKLGKEIHGYVLRHHIQLSTGVG 300
F RM+Q ++P+ + +GVL C F ++IH + H
Sbjct: 157 --------FRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITH--------- 199
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
G FV N LID+Y + G + N + F+ ++K
Sbjct: 200 -------GYENSLFVCNPLIDLYFKNGFL--NSAKKVFDGLQKR 234
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 168/603 (27%), Positives = 265/603 (43%), Gaps = 170/603 (28%)
Query: 51 CGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY------ 102
CG A+L +FE + N + SW SM+ + GY ++ ++LF + +EGV+
Sbjct: 288 CGHLDLAYL-VFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTM 346
Query: 103 ----KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
AC++ + +G+ V DY+ + N V +DMF+KCG +E+A G F+ +
Sbjct: 347 VSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNME- 405
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ D++ +++D YAK +A F + +K + +W
Sbjct: 406 ----------------------KRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFS--RMIQTDMQPNTISLSGVLAACAQVK 276
N +++GY Q G + AL F ++ ++ +P+ ++L L+ACAQ+
Sbjct: 444 NVLISGY------------EQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLG 491
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGS-FVWNSLID 321
+G+ IHGY+ + IQL+ + +LI + +G FVW+++I
Sbjct: 492 AMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIA 551
Query: 322 ---MYGRCGA------------IQKN------------------EGWRYFEMMKKEYNME 348
M+GR A ++ N EG R F+ M++ Y +
Sbjct: 552 GLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVV 611
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P + Y CMVD+L RAG ++ L F++ MP PS++ C N ++AE A
Sbjct: 612 PKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSR 671
Query: 399 LFELEP--------LSS-----------------------------------GKVHSFIA 415
L E+EP LS+ G VH FI
Sbjct: 672 LLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIV 731
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFG 460
GD +H L I KL + + ++ GY MK HSEK+A+AFG
Sbjct: 732 GDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFG 791
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
LI +R++KNLR+C DCH+ K VSK R+I++ D YRFHHF G CSC
Sbjct: 792 LIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYG----RDIVLRDRYRFHHFSGGHCSCQ 847
Query: 521 DYW 523
DYW
Sbjct: 848 DYW 850
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 38/214 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAG 224
GK +H +K D+ V NSL+ FYA C +L +A+ F I+ K +VSWN+M
Sbjct: 259 GKAVHGMAIKTS-FGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSM--- 314
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+TGF Q G + AL+ F RM + PN +++ V++ACA+ LG+++
Sbjct: 315 ---------VTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKV 365
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
Y+ R+ + ++ V N+ IDM+ +CG ++ G F+ M+K
Sbjct: 366 CDYIDRNEMMMNLNVC----------------NATIDMFVKCGEVEIARG--LFDNMEKR 407
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+ + ++D A+ + + MP
Sbjct: 408 -----DVVSWTTIIDGYAKMSEHGIARDIFDSMP 436
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 41/228 (17%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLE-----SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F + K K+IH L+ + L S+L + F A L A F +I Q
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSA----LDYARKVFDQIPQ 201
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+L SWN ++ A T ++ L F + + PN + ++ A
Sbjct: 202 PNLYSWNILIRALA-----------TSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAV 250
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
A+ + F +GK +HG ++ G FV NSLI Y CG + +
Sbjct: 251 AERRCFLVGKAVHGMAIK----------------TSFGDDVFVLNSLIHFYASCGHL--D 292
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ FEM++ + + MV + G D L+ ++M E
Sbjct: 293 LAYLVFEMIEGN---NKDIVSWNSMVTGFVQGGYPDKALDLFERMRNE 337
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 167/636 (26%), Positives = 257/636 (40%), Gaps = 191/636 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ MP R+V SW SM+ G Y++ + LF + EG V AC+EL
Sbjct: 253 VFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHL 312
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC--------------------------- 143
+G+ V+ Y + F + +LDM+ C
Sbjct: 313 LFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITS 372
Query: 144 ----GRMEMASGEFEE-----------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
G + +G F+E F+ LLKHGK +H + ++ + +E
Sbjct: 373 YTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIR-NGMEK 431
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
L V N+LM+ Y KC ++ A F + K ++SWN ++ GY+ E
Sbjct: 432 VLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANE--------- 482
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A F+ M+ ++PN ++++ +L A A + + G+E+H Y LR V A
Sbjct: 483 ---AFSLFTEML-LQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANA 538
Query: 303 LISI--------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQ-- 330
LI + L + + W ++ YG R I
Sbjct: 539 LIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPD 598
Query: 331 ----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
++EGWR+F+ M+KE+ +EP ++ Y CMVDLL G + F+
Sbjct: 599 AASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFI 658
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------- 408
MP EP S+ C N +AE A +FELEP ++G
Sbjct: 659 DSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWE 718
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
KVH FIA + +H +I+E L + +++ G
Sbjct: 719 AVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEG 778
Query: 442 YMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ + CGHS KLA+AFG+++ S G +RV KN R+C CH K
Sbjct: 779 HDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAK 838
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK REII+ D+ RFHHF G CSC YW
Sbjct: 839 FISKMC----SREIILRDSNRFHHFEQGRCSCRGYW 870
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/447 (23%), Positives = 182/447 (40%), Gaps = 85/447 (19%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
+Y + Q C ++ +LE G + AH +V L GM + ++ V + + N
Sbjct: 93 SYGAVLQLCSEVRSLEGGKR--AHFLVRASSL-GRDGMDNVLGQKLVLMYLKCGDLENAR 149
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP---VLDMF 140
++E+ + + + + ++ D R G ++ M + C RP +
Sbjct: 150 RVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM-------HCCGVRPDAYTISCV 202
Query: 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
+KC + L ++ G+ +H L+K S V N+LM FYAK
Sbjct: 203 LKC--------------IAGLGSIEDGEVVHGL-LEKLGFGSQCAVGNALMAFYAKSNRT 247
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
K A F + + ++SWN+M I+G T G + A+E F RM +
Sbjct: 248 KDAILVFDGMPHRDVISWNSM------------ISGCTSNGLYDKAIELFVRMWLEGEEL 295
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
++ +L VL ACA++ LG+ +HGY ++ G + + + N L+
Sbjct: 296 DSATLLSVLPACAELHLLFLGRVVHGYSVK----------------TGFISQTSLANVLL 339
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
DMY C WR + + ++ + + M+ RAG +D ++M E
Sbjct: 340 DMYSNC------SDWRSTNKIFRNM-VQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLE 392
Query: 381 PSSAEPCNPDI-AEHAARHLFE-LEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+ PDI A +A H F E L GK VH + A V ++ LM +Y +
Sbjct: 393 GT-----RPDIFAITSALHAFAGNELLKHGKSVHGY-AIRNGMEKVLAVTNALMEMYVK- 445
Query: 438 KKIGYMKRIPACGHSEKLALAF-GLIS 463
CG+ E+ L F G++S
Sbjct: 446 -----------CGNMEEAKLIFDGVVS 461
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 161/607 (26%), Positives = 267/607 (43%), Gaps = 167/607 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+ ++MP ++ +WT+M V+GY D G ++ E D + V++
Sbjct: 219 VLDEMPNKDDLTWTTM-----VVGYVRRG--------DVGAARSVFEEVDGKFDV-VWNA 264
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIHPH 173
MIS V+ ++F RM + +E F+ N+ L HGK +H
Sbjct: 265 MISGYVHSGMAVE--AFELF---RRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQ 319
Query: 174 HLKKDD---LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY----- 225
++ E+ L VNN+L+ FY+KC + VA F + K +VSWN +L+GY
Sbjct: 320 IIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSC 379
Query: 226 ---ALGGFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
A+ F E ++G+ G E AL+ F++M +++P + +G +AA
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAA 439
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVW 316
C ++ K GK++HG++++ + S G ALI++ S W
Sbjct: 440 CGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSW 499
Query: 317 NSLIDMYGRCGAIQK---------------------------------NEGWRYFEMMKK 343
N++I G+ G ++ +EG+RYFE MK+
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKR 559
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAE 393
++ + P + Y ++DLL RAG+ + + +K MPFEP+ + + ++
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
HAA LF++ P G KV
Sbjct: 620 HAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKV 679
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLA 456
H F+ GDT H H++ + L + ++++K+GY+ HSE+LA
Sbjct: 680 HVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLA 739
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+ FGL++ PG+ + V+KNLR+C DCH+ ++SKA REI++ D RFHHF DG
Sbjct: 740 VGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVG----REIVVRDVRRFHHFKDGE 795
Query: 517 CSCGDYW 523
CSCG+YW
Sbjct: 796 CSCGNYW 802
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L M N C TYA C +L L+ G Q+H H++ G E G
Sbjct: 417 LFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYA 476
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
MF MP + SW +M+ G+ E + LF ++ EG+Y
Sbjct: 477 RCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 169/640 (26%), Positives = 270/640 (42%), Gaps = 197/640 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------L 59
P+ T+ + L + C + ++ LG+++H+ L+ G + F L
Sbjct: 112 PNNFTIPFVL--KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+ +P++NV SWT+++ Y G++ E + F L++ G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG------------------- 210
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
+K + + VK + C R+ + SGE+ ++ ++
Sbjct: 211 ----LKPDSFSLVK-----VLAACARLGDCTSGEWIDR-----------------YISDS 244
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ ++ V SL+D Y KC L+ A+ FS + +K +VSW+ M+ GYA G ++
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ----- 299
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
AL+ F +M +++P+ ++ GVL+ACA + LG + R+ +
Sbjct: 300 -------ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352
Query: 299 VGIALI----------------------------------SIQGLGTGSFVWNSLIDMYG 324
+G ALI S+ G F SL++ +G
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412
Query: 325 -----------RCGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG NEG ++F MK+ +++ P++E Y CMVDLL RAG ++
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------- 409
+ MP +P++ C + +AE + L ELEP +SG
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
VH F+ GD SH L KI KL L E+
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K +G++ HSEKLA+AFGLI++ P +RV+KNLR+CGDCH
Sbjct: 593 KAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCH 652
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK K REII+ D RFH F+DG+CSC DYW
Sbjct: 653 DAIKLISKITK----REIIIRDTNRFHTFIDGSCSCRDYW 688
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 37/172 (21%)
Query: 159 SNLSLLKHGKEIHPH----HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
+ L+ K IH HL +D+ +L++ +L DF Y K+ FS++K+ +
Sbjct: 24 NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-DF-GSTNYSKLV---FSQVKEPN 78
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ WN M I G + A+ + M PN ++ VL ACA+
Sbjct: 79 IFLWNTM------------IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+LG +IH +++ G FV SL+ +Y +C
Sbjct: 127 KLDVRLGLKIHSLLVK----------------AGYDHDVFVKTSLLSLYVKC 162
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 169/640 (26%), Positives = 270/640 (42%), Gaps = 197/640 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------L 59
P+ T+ + L + C + ++ LG+++H+ L+ G + F L
Sbjct: 112 PNNFTIPFVL--KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+ +P++NV SWT+++ Y G++ E + F L++ G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG------------------- 210
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
+K + + VK + C R+ + SGE+ ++ ++
Sbjct: 211 ----LKPDSFSLVK-----VLAACARLGDCTSGEWIDR-----------------YISDS 244
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ ++ V SL+D Y KC L+ A+ FS + +K +VSW+ M+ GYA G ++
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ----- 299
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
AL+ F +M +++P+ ++ GVL+ACA + LG + R+ +
Sbjct: 300 -------ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352
Query: 299 VGIALI----------------------------------SIQGLGTGSFVWNSLIDMYG 324
+G ALI S+ G F SL++ +G
Sbjct: 353 LGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHG 412
Query: 325 -----------RCGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG NEG ++F MK+ +++ P++E Y CMVDLL RAG ++
Sbjct: 413 IRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEA 472
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------- 409
+ MP +P++ C + +AE + L ELEP +SG
Sbjct: 473 HQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGN 532
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
VH F+ GD SH L KI KL L E+
Sbjct: 533 HRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGREL 592
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K +G++ HSEKLA+AFGLI++ P +RV+KNLR+CGDCH
Sbjct: 593 KAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCH 652
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK K REII+ D RFH F+DG+CSC DYW
Sbjct: 653 DAIKLISKITK----REIIIRDTNRFHTFIDGSCSCRDYW 688
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 37/172 (21%)
Query: 159 SNLSLLKHGKEIHPH----HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
+ L+ K IH HL +D+ +L++ +L DF Y K+ FS++K+ +
Sbjct: 24 NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-DF-GSTNYSKLV---FSQVKEPN 78
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ WN M I G + A+ + M PN ++ VL ACA+
Sbjct: 79 IFLWNTM------------IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+LG +IH +++ G FV SL+ +Y +C
Sbjct: 127 KLDVRLGLKIHSLLVK----------------AGYDHDVFVKTSLLSLYVKC 162
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 157/592 (26%), Positives = 250/592 (42%), Gaps = 164/592 (27%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYN-------VLGYYEEIVNLFYLLIDE----GVYKACSE 107
L MFE M ER++ SW +++ YN L ++ ++ + DE V AC+
Sbjct: 249 LSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACAN 308
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
L+ ++GK ++ Y++ ++ + ++ + K G +E A ++ ++L+++
Sbjct: 309 LRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISF- 367
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+L++ Y K K A F + + +++W AM+ GY
Sbjct: 368 --------------------TALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGY-- 405
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
Q G + A+E F MI++ +PN+ +L+ VL+ACA + GK+IH
Sbjct: 406 ----------EQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCR 455
Query: 288 VLRHHIQLSTGVGIALISIQGLGTG----------------SFVWNSLIDMYGRCGAIQK 331
+R + S V A+I++ + W S+I + G ++
Sbjct: 456 AIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQ 515
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
++G RY+E M E+ + P M Y CMV
Sbjct: 516 AIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMV 575
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLLARAG + F+++MP P + C N D+AE AA L ++P +SG
Sbjct: 576 DLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSG 635
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
KVH F A D H
Sbjct: 636 AYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDA 695
Query: 426 ISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLR 471
I +K ++ EIKK G++ + + HSEKLA+AFGLIST + LR
Sbjct: 696 ICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLR 755
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+C DCH+ K++SK +REII+ D RFHHF DG CSC DYW
Sbjct: 756 IMKNLRVCNDCHTAIKFISKVV----DREIIVRDATRFHHFRDGYCSCKDYW 803
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 62/281 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F +MPER+ SWT M+ N G + + V F ++ EG V +C+ +
Sbjct: 119 VFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEA 178
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ V+ ++I + V VL M+ KCG E A FE + S
Sbjct: 179 RGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSW------ 232
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N+++ Y + +A F ++++ +VSWNA++AGY
Sbjct: 233 -----------------NAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGY----- 270
Query: 231 REEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
Q G + AL+FFSRM+ + M+P+ +++ VL+ACA ++ K+GK++H Y+L
Sbjct: 271 -------NQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYIL 323
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
R G+ S + N+LI Y + G+++
Sbjct: 324 R----------------TGMPYSSQIMNALISTYAKSGSVE 348
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 35/190 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ YAK L A F+++ ++ VSW M + G + G A+
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVM------------VVGLNRAGRFWDAV 148
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F M+ + P+ L+ VL++CA + +G+++H +V++ + LS+ V +A
Sbjct: 149 KTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIK--LGLSSCVPVA----- 201
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
NS++ MYG+CG + FE MK + + MV L G+
Sbjct: 202 ---------NSVLYMYGKCGDAETARA--VFERMKVR-----SESSWNAMVSLYTHQGRM 245
Query: 368 DDTLNFMKKM 377
D L+ + M
Sbjct: 246 DLALSMFENM 255
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 178/696 (25%), Positives = 288/696 (41%), Gaps = 219/696 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL---C--------------AFLGMFEKMP 66
T + Q C +L L LG ++HA L+ CG EL C + L +F ++
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIA 328
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
E++ SW SM+ Y +Y E ++ F ++ G + A L G++
Sbjct: 329 EKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE 388
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN---------------- 160
+ Y I + + V ++DM+IKCG +E ++ FE +
Sbjct: 389 FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSR 448
Query: 161 --------LSLLKHG------------------------KEIHPHHLKKDDLESDLLVNN 188
L L K G K++H + ++ L DL++ N
Sbjct: 449 HSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLL--DLILEN 506
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y +C + F ++++K +VSW +M I T G A+
Sbjct: 507 RLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSM------------INCCTNNGRLNGAVF 554
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-Q 307
F+ M + ++QP++++L +L A A + GK++HG+++R + + V +L+ +
Sbjct: 555 LFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYS 614
Query: 308 GLGTGSF--------------VWNSLIDMYGRCGAIQK---------------------- 331
G G+ ++ +W ++I+ G G ++
Sbjct: 615 GCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLA 674
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
EG Y ++M +Y ++P E Y C+VD+L R+GQ ++ F+K MP +
Sbjct: 675 LLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMD 734
Query: 381 PSSAEPC----------NPDIAEHAARHLFELEPLSSGK--------------------- 409
P SA C N +A AA L ELEP + G
Sbjct: 735 PKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETR 794
Query: 410 ----------------------VHSFIAGDTSH---SLVH----KISEKLMRL------- 433
+H+F +GD H +H +I+E L R
Sbjct: 795 TRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDT 854
Query: 434 ------YSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
SE +KI + + HSE++A+AFGLIST PG P+R+ KNLR+CGDCH TK
Sbjct: 855 RFVLHDTSEEEKIDMLHK-----HSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTK 909
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VSK ER+I++ D RFHHF G+CSC D+W
Sbjct: 910 LVSKL----FERDIVVRDANRFHHFSGGSCSCEDFW 941
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 179/643 (27%), Positives = 278/643 (43%), Gaps = 180/643 (27%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLGM-------FEK 64
+T++ + C K ++LG Q++ ++ G V++ LG+ F++
Sbjct: 139 ITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDE 198
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
MPERNV +M+ G EE LF C LK+ +D + I I
Sbjct: 199 MPERNVVMCNTMITGLMRCGMIEESQRLF-----------CG-LKE----RDSISWTIMI 242
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN-------LSLLKHGKEIHPHHLKK 177
++R LDMF + M +A ++ F + L L GK+IH + ++
Sbjct: 243 TGLMQNGLEREALDMFRE---MRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
D + ++ V ++L+D Y+KCR +K A F ++ QK+++SW AML GY GF EE
Sbjct: 300 DH-KDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEE---- 354
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
A++ F M + ++P+ +L V+++CA + + G + H L +
Sbjct: 355 --------AVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFI 406
Query: 298 GVGIALISIQGLGTGS---------------FVWNSLIDMYG------------------ 324
V ALI++ G + W +L+ Y
Sbjct: 407 TVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAH 466
Query: 325 -----------------RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
R G ++K G +YFE M KE+ + P ++ C++DLL RAG+
Sbjct: 467 GLKPDGVTFIGVLSACSRAGLVEK--GLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRL 524
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS-- 407
++ NF+ MP P C + +I + AA L LEP LSS
Sbjct: 525 EEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLY 584
Query: 408 ---------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLY 434
GKVH F A D S + +I +L +L
Sbjct: 585 ASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLN 644
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
++ + GY+ + + HSEKLA+AFGLI PG P+RVIKNLR+CG
Sbjct: 645 YKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCG 704
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK++SK +REI++ D RFH F DG CSCGD+W
Sbjct: 705 DCHNATKFISKIT----QREILVRDAVRFHLFKDGTCSCGDFW 743
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 39/196 (19%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K++H LK L NN L+ Y K L AH F I Q +L SWN +L+ Y
Sbjct: 23 QAKKLHCLILKTIKQPETFLSNN-LITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVY 81
Query: 226 ALGG-------------FRE------EITGFTQYGDGETALEFFSRMIQ-TDMQPNTISL 265
+ G FR+ I+G+ YG A+ + M++ M N I+
Sbjct: 82 SKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITF 141
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
S +L C++ + LG++I+G +L+ G G+ FV + L+DMY +
Sbjct: 142 STMLILCSKFRCVDLGRQINGQILKF----------------GFGSDVFVGSPLVDMYTK 185
Query: 326 CGAIQKNEGWRYFEMM 341
G I + RYF+ M
Sbjct: 186 LGLIY--DAKRYFDEM 199
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 177/679 (26%), Positives = 270/679 (39%), Gaps = 211/679 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C LE G Q+HAH I + AF+ +FE
Sbjct: 140 TWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199
Query: 66 PE-RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
P+ RN WT+M+ Y+ G + + F + EG+ AC + G
Sbjct: 200 PDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFG 259
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------LSLLKH 166
V+ ++ F N V ++DM+ KCG + A E + + + ++
Sbjct: 260 AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQ 319
Query: 167 G---------KEIHPHHLKKDDL------------------------------ESDLLVN 187
G + +H H+K D+ E+ LVN
Sbjct: 320 GLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVN 379
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+D YAK Y A F K+ K ++SW ++ +TG G E AL
Sbjct: 380 NALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSL------------VTGCVHNGSYEEAL 427
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M + P+ I ++ VL+ACA++ + GK++H L+
Sbjct: 428 RLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLK----------------S 471
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQK------------------------------------ 331
GLG+ V NSL+ MY +CG I+
Sbjct: 472 GLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLV 531
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------E 385
G YF+ M++ Y ++P E Y CM+DLL R+G+ + + +M +P +
Sbjct: 532 EHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLA 591
Query: 386 PC----NPDIAEHAARHLFELEPLS----------------------------------- 406
C N ++ E AA +LFELEP +
Sbjct: 592 ACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKE 651
Query: 407 --------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------K 444
S KVH F++ D SH +I K+ + IK+ GY+ K
Sbjct: 652 PGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGK 711
Query: 445 RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
+ HSEKLA+AFGL++ PG+P+R+ KNLR+CGDCH+ KYVS R +I+
Sbjct: 712 ELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGV----FHRHVILR 767
Query: 505 DNYRFHHFVDGACSCGDYW 523
D+ FHHF +GACSC DYW
Sbjct: 768 DSNCFHHFREGACSCSDYW 786
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 124/327 (37%), Gaps = 98/327 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F + P R+ +W+S++ Y G E + LF+ + EG V + CS
Sbjct: 94 LFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVL 153
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK ++ + I +F+ NA V ++DM+ KC
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKC--------------------------- 186
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
K LE++ L + + K+ H++ W AM+ GY
Sbjct: 187 ------KCILEAEYLF-------------------ELAPDKRNHVL-WTAMVTGY----- 215
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+Q GDG A+E F M ++ N + +L AC + G ++HG ++R
Sbjct: 216 -------SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
G G FV ++L+DMY +CG + R E M+ + +P
Sbjct: 269 ----------------SGFGANVFVGSALVDMYSKCGDLSNAR--RMLETMEVD---DPV 307
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ M+ R G ++ L+ + M
Sbjct: 308 --SWNSMIVGCVRQGLGEEALSLFRIM 332
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 35/166 (21%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------------- 233
+N ++ +KC + A F + + SWN M+ YA G E
Sbjct: 44 SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103
Query: 234 ------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+G+ +YG ALE F M +PN + VL C+ + GK+IH +
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++ + +FV L+DMY +C I + E
Sbjct: 164 AIKTQFD----------------SNAFVVTGLVDMYAKCKCILEAE 193
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 181/666 (27%), Positives = 266/666 (39%), Gaps = 192/666 (28%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN ++ I C L + +VH + I G L F+G
Sbjct: 114 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 173
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F M ++V SW +M+ Y+ G ++ LF ++ + D+
Sbjct: 174 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELF------------KNMRKENIPLDM 221
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------KDFSNLSLLKHGKE 169
+ I L++F R + SG ++L G E
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVF----RQMIFSGSLPNCVTIISVLSACASLGAFSQGME 277
Query: 170 IHPHHLKK------DDL---ESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSW 218
IH + LK +D + DL+V N+L+D Y+KCR K A F I +++++V+W
Sbjct: 278 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 337
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVK 276
M+ G+A QYGD AL+ F MI + PN ++S +L ACA +
Sbjct: 338 TVMIGGHA------------QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 385
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIA--LISIQG----LGTGSFV-----------WNSL 319
++GK+IH YVLRHH S+ +A LI++ + T V W S+
Sbjct: 386 AIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 445
Query: 320 IDMYG-----------------------------------RCGAIQKNEGWRYFEMMKKE 344
+ YG CG + ++G YF+ M +
Sbjct: 446 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV--DQGLSYFDSMSAD 503
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEH 394
Y + P E Y +DLLAR G+ D +K MP EP++ C N ++AEH
Sbjct: 504 YGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 563
Query: 395 AARHLFELEPLSSGK-------------------------------------------VH 411
A L E+ + G
Sbjct: 564 ALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTA 623
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLAL 457
SF GD SH L +I L L IK +GY+ K HSEKLAL
Sbjct: 624 SFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLAL 683
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
A+GL++T PG P+R+ KNLR+CGDCHS Y+SK + EI++ D RFHHF +G+C
Sbjct: 684 AYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKI----VDHEIVVRDPSRFHHFKNGSC 739
Query: 518 SCGDYW 523
SCG YW
Sbjct: 740 SCGGYW 745
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 151/371 (40%), Gaps = 102/371 (27%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD--- 157
V KAC EL +R G + + FE N + ++ M+ +CG +E AS F+E
Sbjct: 16 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 75
Query: 158 --------------------------FSNLSLLKH------------------------- 166
FS ++L+ H
Sbjct: 76 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 135
Query: 167 ---GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
KE+H + ++ D+ V N+L+D YAKC ++ A F+ ++ K +VSWNAM+A
Sbjct: 136 VPQTKEVHGNAIRNGTFL-DVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 194
Query: 224 GYALGG-----------FREE------------ITGFTQYGDGETALEFFSRMIQTDMQP 260
GY+ G R+E I G++Q G AL F +MI + P
Sbjct: 195 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLP 254
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNSL 319
N +++ VL+ACA + F G EIH Y L++ + L G G V+N+L
Sbjct: 255 NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG-------GEDEDLMVYNAL 307
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ----YCCMVDLLARAGQFDDTLNFMK 375
IDMY +C R F+ + ++ P E+ + M+ A+ G +D L
Sbjct: 308 IDMYSKC---------RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 358
Query: 376 KMPFEPSSAEP 386
+M EP P
Sbjct: 359 EMISEPYGVAP 369
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M++ + + +L VL AC ++ ++ G HG LI G +
Sbjct: 1 MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHG----------------LICCNGFESN 44
Query: 313 SFVWNSLIDMYGRCGAIQK 331
F+ N+L+ MY RCG++++
Sbjct: 45 VFICNALVAMYSRCGSLEE 63
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 151/503 (30%), Positives = 227/503 (45%), Gaps = 140/503 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K SNLS L+ +IH + K E+D+ NSL++ YA K+AH F +I +
Sbjct: 152 KACSNLSALEETTQIHAQ-ITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDA 210
Query: 216 VSWNAMLAGYALGG--------FREE-----------ITGFTQYGDGETALEFFSRMIQT 256
VSWN+++ GYA G FR+ I+G+ Q G + AL+ F M +
Sbjct: 211 VSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNS 270
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTG 312
D++P+ +SL+ L+ACAQ+ + GK IH Y+ + I++ + +G LI + +G
Sbjct: 271 DVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEA 330
Query: 313 SFV-----------WNSLIDMYGRCG----AIQK-------------------------- 331
V W +LI Y G AI K
Sbjct: 331 LEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYT 390
Query: 332 ---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EG F M+++YN++P +E Y C+VDLL+RAG D+ F+++MP +P++
Sbjct: 391 GLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGA 450
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSGK----------------------------- 409
+ C N ++ E L ++P G+
Sbjct: 451 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGV 510
Query: 410 --------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
H F+AGD SH + KI K + ++++ GY+
Sbjct: 511 AKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVD 570
Query: 444 ---KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
+ HSEKLA+ +GLI T PG+ +R++KNLR+C DCH TK +SK K R+
Sbjct: 571 DDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYK----RD 626
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I+M D RFHHF DG CSCGDYW
Sbjct: 627 IVMRDRTRFHHFRDGKCSCGDYW 649
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 97/267 (36%), Gaps = 42/267 (15%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K+IH LK ++ + L + +L A F + WN M
Sbjct: 60 KQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM---- 115
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I GF+ + E +L + RM+ N + +L AC+ + + +IH
Sbjct: 116 --------IRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAI 329
+ + + +LI+ TG+F WNS+I Y + G +
Sbjct: 168 AQITKLGYENDVYAVNSLINSYA-ATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKM 226
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNP 389
+ F M +E + M+ +AG + L +M + S EP N
Sbjct: 227 --DIALTLFRKM-----VEKNAISWTTMISGYVQAGMHKEALQLFHEM--QNSDVEPDNV 277
Query: 390 DIAEHAARHLFELEPLSSGK-VHSFIA 415
+A +A +L L GK +HS++
Sbjct: 278 SLA-NALSACAQLGALEQGKWIHSYLT 303
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 184/692 (26%), Positives = 280/692 (40%), Gaps = 208/692 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELC-AFLGMFEK------------ 64
+VT+A + ++LG +VHA + G V +C + + M+ K
Sbjct: 205 SVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 264
Query: 65 -MPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVY----KACSELKDHRV 113
M R++ SW ++M + G+ E + LF+ ++ + Y K C+ +K +
Sbjct: 265 GMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGL 324
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------------------------- 146
+ ++ ++ F V ++D + K G++
Sbjct: 325 ARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384
Query: 147 -----EMASGEFEE--------KDFSNLSLLKHG-----KEIHPHHLKKDDLESDLLVNN 188
+A+ F DF+ ++L +IH +K + E +V
Sbjct: 385 QNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTN-YECTSIVGT 443
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y+K + A F I QK +VSW+AML YA Q GD + A
Sbjct: 444 ALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYA------------QAGDSDGATN 491
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F +M ++PN ++S V+ ACA G LG++ H ++H + V AL+S+
Sbjct: 492 IFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMY 551
Query: 308 GLGTGSF----------------VWNSLIDMYGRCGAIQK-------------------- 331
GS WNS++ Y + G QK
Sbjct: 552 AR-KGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTF 610
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EG RYF+ M ++Y + P ME Y CMVDL +RAG+ D+ ++ ++ M
Sbjct: 611 LSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMS 670
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------------- 408
F C N ++ + AA L LEP S
Sbjct: 671 FPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDE 730
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--- 442
KVHSFIA D SH L +I KL + +++K+ GY
Sbjct: 731 VRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPD 790
Query: 443 -----------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSE+LALAFGLI+T PG+PL + KNLR+CGDCH+ K VSK
Sbjct: 791 TSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSK 850
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
E +REI+M D RFHHF G CSCGD+W
Sbjct: 851 IE----DREIVMRDCSRFHHFNSGVCSCGDFW 878
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/287 (21%), Positives = 115/287 (40%), Gaps = 74/287 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE MP+RNV +WTS++ Y G +++ LF+ + EGV+
Sbjct: 161 VFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWP----------------- 203
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
N+ VL + G +++ G+ +H +K
Sbjct: 204 --------NSVTFASVLSVVASQGMVDL------------------GRRVHAQSVKFGCC 237
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ + V NSLM+ YAKC ++ A F ++ + +VSWN ++AG L G ++ +
Sbjct: 238 ST-VFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNG--HDLEALQLF 294
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
D +++ ++ + + V+ CA +K L +++H VL+
Sbjct: 295 HDSRSSITMLTQS----------TYATVIKLCANIKQLGLARQLHSSVLK---------- 334
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+G + V +L+D Y + G Q F +M N+
Sbjct: 335 ------RGFHSYGNVMTALMDAYSKAG--QLGNALDIFLLMSGSQNV 373
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H ++ D+ V SL+D Y K + F + ++++V+W ++L
Sbjct: 122 GKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLL---- 177
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
TG+ Q G +E F RM + PN+++ + VL+ A LG+ +H
Sbjct: 178 --------TGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHA 229
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
++ G + FV NSL++MY +CG +++
Sbjct: 230 QSVKF----------------GCCSTVFVCNSLMNMYAKCGLVEE 258
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 186/708 (26%), Positives = 283/708 (39%), Gaps = 212/708 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA---------HLIVCGVEL---- 55
LL+S D PD T + C N+++G+ +H L+VC +
Sbjct: 302 LLESGDGLIPD--VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359
Query: 56 -CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
C L +F K+ ++V SW SM+G Y+ G+ E +L + E
Sbjct: 360 KCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTI 419
Query: 100 -GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------ 146
+ AC E + + ++ Y + F+ + + + KCG +
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479
Query: 147 ---------------------------EMASGEFEEKDFS---------NLSLLKHGKEI 170
EM DFS L LL++GKEI
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L+ + LE + V SL+ Y C F ++ K+ V WNAML+GY+
Sbjct: 540 HGFVLR-NGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNEL 598
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E AL F +M+ ++P+ I+++ +L AC+Q+ LGKE+H + L+
Sbjct: 599 PNE------------ALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALK 646
Query: 291 HHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK---- 331
+ + V +L+ + LG + WN +I +G G K
Sbjct: 647 NSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVEL 706
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+EG Y M+ Y +EP +E Y C++D+L
Sbjct: 707 FEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766
Query: 363 RAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEP-------- 404
RAG+ ++ LNF+ +MP EP + + ++ E A L LE
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYIL 826
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ GKV+SFIAG+ S+ +I +
Sbjct: 827 LSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKM 886
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
RL +I +IGY KR GHSEK+A+ FG ++T G+ LR+ KN
Sbjct: 887 WNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKN 946
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ KY+SKA K REI++ DN RFHHF G CSCGDYW
Sbjct: 947 LRICRDCHNAAKYISKAAK----REIVIRDNKRFHHFKKGICSCGDYW 990
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 156/379 (41%), Gaps = 95/379 (25%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L L S+ PD T+ + + C ++ LG VH + G+ + F+G
Sbjct: 198 LELISVTEFQPD--NFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALY 255
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+F+KMPE+N+ SW S++ ++ G++ E F L++ G
Sbjct: 256 GKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVAT 315
Query: 101 ---VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG------------- 144
+ CS + VG ++ + + V ++DM+ KCG
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE 375
Query: 145 ----------------------------RMEMASGEFEEKDFSNLSLLKHGKE------- 169
+M M E + + L+LL E
Sbjct: 376 NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSL 435
Query: 170 --IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+H + L+ + L+NN+ + YAKC L A F + K + SWNA++ G+A
Sbjct: 436 RALHGYSLRH-SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA- 493
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
Q GD AL+F+ M + + P+ S+ +L AC ++ + GKEIHG+
Sbjct: 494 -----------QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542
Query: 288 VLRHHIQLSTGVGIALISI 306
VLR+ +++++ V ++L+S+
Sbjct: 543 VLRNGLEMNSFVAVSLLSL 561
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 86/413 (20%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY 85
++ Q+C + N+E+G ++ L V F G F V + T ++ MY++ GY
Sbjct: 111 GMLLQKCGQYKNVEIGRKLDEMLCVSS----QFSGDF-------VLN-TRLITMYSICGY 158
Query: 86 YEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
E +F L+++ +++ + L V ++YD I E
Sbjct: 159 PLESRLVFDRLLNKNLFQ-WNALVSGYVRNELYDEAIHTFLE------------------ 199
Query: 146 MEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
++ EF+ +F+ L+K GK +H +K L DL V N+++ Y K
Sbjct: 200 -LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMG-LIMDLFVGNAMIALYGK 257
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSR 252
C +L A F K+ +++L+SWN+++ G++ GF E + GDG
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG--------- 308
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
+ P+ ++ +L C+ +G IHG ++ GL
Sbjct: 309 -----LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK----------------LGLVHE 347
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
V N+LIDMY +CG + +E F ++ + ++ + M+ +R G +T +
Sbjct: 348 LMVCNALIDMYSKCGCL--SEAAILFRKIENK-----SVVSWNSMIGAYSREGFVFETFD 400
Query: 373 FMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHK 425
++KM E E I L E E LS +H + HS +K
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGY---SLRHSFQYK 450
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 188/699 (26%), Positives = 288/699 (41%), Gaps = 213/699 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAH---------LIVCGVELCAF-----LGM-- 61
PD +T A + + ++ QVH H L+VC L ++ LG+
Sbjct: 137 PDH--ITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLAC 194
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+ M E++ ++ +++ Y+ G+ + +NLF+ + D G V A ++
Sbjct: 195 HLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMD 254
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMF---------------------------IK 142
D G+ V+ +++ F N V +LD + I
Sbjct: 255 DIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLIT 314
Query: 143 C----GRMEMASGEFEEKDFSN-----------LSL------LKHGKEIHPHHLKKDDLE 181
C GR+E + F E F+ LS+ L+ G++IH + D +
Sbjct: 315 CCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAI- 373
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S++LV NSL+D YAKC A+ F+ + + V W A+++GY G E+
Sbjct: 374 SEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHED-------- 425
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
L+ F M + + ++ + + +L ACA + LGK++H ++R + G
Sbjct: 426 ----GLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGS 481
Query: 302 ALISIQG-LGT--------------GSFVWNSLIDMYGRCG---------------AIQK 331
AL+ + G+ S WN+LI Y + G +Q
Sbjct: 482 ALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQP 541
Query: 332 N------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
N EG +YF M + Y +EP E Y MVD+L R+G+FD+
Sbjct: 542 NSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKL 601
Query: 374 MKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPL------------------ 405
M +MPFEP S C N ++A AA LF ++ L
Sbjct: 602 MARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGE 661
Query: 406 --SSGKV------------------------HSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
S GKV H F A DTSH +I+ KL L ++++
Sbjct: 662 WDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEE 721
Query: 440 IGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY K C HSE++A+AF LIST GSP+ V+KNLR C DCH+
Sbjct: 722 QGY-KPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHA 780
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK REI + D+ RFHHF DG+CSC DYW
Sbjct: 781 AIKVISKIVN----REITVRDSSRFHHFTDGSCSCKDYW 815
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 49/223 (21%)
Query: 174 HLKKDDL-----------ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
HL++ DL +++ N+++ Y K L A F + Q+ +V+W ++
Sbjct: 52 HLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLI 111
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
GYA Q+ A F+ M + M P+ I+L+ +L+ + +
Sbjct: 112 GGYA------------QHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVA 159
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++HG+V++ G + V NSL+D Y C F+ M
Sbjct: 160 QVHGHVVK----------------VGYDSTLMVCNSLLDSY--CKTRSLGLACHLFKHMA 201
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNF---MKKMPFEPS 382
++ N+ + ++ ++ G D +N M+ + F PS
Sbjct: 202 EKDNV-----TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPS 239
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 158/617 (25%), Positives = 261/617 (42%), Gaps = 169/617 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ + C + +L G VH ++ G++ ++++ ++M MY+ L +
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDC-------------DLYTGNALMNMYSKLLGID 157
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
+ +F L+ KDV Y I + + L M + G +
Sbjct: 158 SVRKVFELMPR----------------KDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201
Query: 148 MASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+ F FS + GKEIH + ++K ++SD+ + +SL+D YAK ++ +
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDS 260
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
FS + ++ +SWN+++AGY Q G AL F +M+ ++P +
Sbjct: 261 ERVFSHLYRRDSISWNSLVAGY------------VQNGRYNEALRLFRQMVSAKVRPGAV 308
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI----------------- 306
+ S V+ ACA + LGK++HGYVLR + + AL+ +
Sbjct: 309 AFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRM 368
Query: 307 ---------------------------------QGLGTGSFVWNSLIDMYGRCGAIQKNE 333
QG+ + +++ G + +E
Sbjct: 369 NLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV--DE 426
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC 387
W YF M K Y + +E Y + DLL RAG+ ++ +F+ KM EP+ + C
Sbjct: 427 AWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSC 486
Query: 388 ----NPDIAEHAARHLFELEPLSSG----------------------------------- 408
N ++AE A +F ++ + G
Sbjct: 487 SVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPA 546
Query: 409 --------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRI 446
K H F++GD SH + +I+E L + +++K GY+ KR
Sbjct: 547 CSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRE 606
Query: 447 PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
GHSE+LA+AFG+I+T PG+ +RV KN+R+C DCH K++SK EREII+ DN
Sbjct: 607 LLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKIT----EREIIVRDN 662
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF G+CSCGDYW
Sbjct: 663 SRFHHFNRGSCSCGDYW 679
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 83/212 (39%), Gaps = 37/212 (17%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K++H ++ L + ++ Y + L A F ++ +++W ++
Sbjct: 23 QAKQLHAQFIRTQSLSHT--SASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSV---- 76
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I FT AL F M + P+ VL +C + + G+ +H
Sbjct: 77 --------IRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
G+++R G+ + N+L++MY + I + FE+M ++
Sbjct: 129 GFIVR----------------LGMDCDLYTGNALMNMYSKLLGIDSVR--KVFELMPRK- 169
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ Y ++ A++G ++D L +++M
Sbjct: 170 ----DVVSYNTVIAGYAQSGMYEDALRMVREM 197
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 181/666 (27%), Positives = 266/666 (39%), Gaps = 192/666 (28%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN ++ I C L + +VH + I G L F+G
Sbjct: 221 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMEN 280
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F M ++V SW +M+ Y+ G ++ LF ++ + D+
Sbjct: 281 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELF------------KNMRKENIPLDM 328
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------KDFSNLSLLKHGKE 169
+ I L++F R + SG ++L G E
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVF----RQMIFSGSLPNCVTIISVLSACASLGAFSQGME 384
Query: 170 IHPHHLKK------DDL---ESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSW 218
IH + LK +D + DL+V N+L+D Y+KCR K A F I +++++V+W
Sbjct: 385 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 444
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVK 276
M+ G+A QYGD AL+ F MI + PN ++S +L ACA +
Sbjct: 445 TVMIGGHA------------QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 492
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIA--LISIQG----LGTGSFV-----------WNSL 319
++GK+IH YVLRHH S+ +A LI++ + T V W S+
Sbjct: 493 AIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSM 552
Query: 320 IDMYG-----------------------------------RCGAIQKNEGWRYFEMMKKE 344
+ YG CG + ++G YF+ M +
Sbjct: 553 MTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMV--DQGLSYFDSMSAD 610
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEH 394
Y + P E Y +DLLAR G+ D +K MP EP++ C N ++AEH
Sbjct: 611 YGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 670
Query: 395 AARHLFELEPLSSGK-------------------------------------------VH 411
A L E+ + G
Sbjct: 671 ALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTA 730
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLAL 457
SF GD SH L +I L L IK +GY+ K HSEKLAL
Sbjct: 731 SFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLAL 790
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
A+GL++T PG P+R+ KNLR+CGDCHS Y+SK + EI++ D RFHHF +G+C
Sbjct: 791 AYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIV----DHEIVVRDPSRFHHFKNGSC 846
Query: 518 SCGDYW 523
SCG YW
Sbjct: 847 SCGGYW 852
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 179/449 (39%), Gaps = 113/449 (25%)
Query: 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL 92
P ++ LG V A + CG A L + P V+ W ++ + G + +N+
Sbjct: 46 PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINV 104
Query: 93 FYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
++ G V KAC EL +R G + + FE N + ++ M+ +
Sbjct: 105 SCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 164
Query: 143 CGRMEMASGEFEEKD-----------------------------FSNLSLLKH------- 166
CG +E AS F+E FS ++L+ H
Sbjct: 165 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 224
Query: 167 ---------------------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
KE+H + ++ D+ V N+L+D YAKC ++ A
Sbjct: 225 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL-DVFVGNALIDAYAKCGLMENAVK 283
Query: 206 KFSKIKQKHLVSWNAMLAGYALGG-----------FREE------------ITGFTQYGD 242
F+ ++ K +VSWNAM+AGY+ G R+E I G++Q G
Sbjct: 284 VFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGC 343
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGI 301
AL F +MI + PN +++ VL+ACA + F G EIH Y L++ + L G
Sbjct: 344 SHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG- 402
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ----YCCM 357
G V+N+LIDMY +C R F+ + ++ P E+ + M
Sbjct: 403 ------GEDEDLMVYNALIDMYSKC---------RSFKAARSIFDDIPLEERNVVTWTVM 447
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
+ A+ G +D L +M EP P
Sbjct: 448 IGGHAQYGDSNDALKLFVEMISEPYGVAP 476
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 166/590 (28%), Positives = 258/590 (43%), Gaps = 158/590 (26%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL--GYYEEIVNLFYLLIDEGVYKACSEL 108
CG + A L +F+KM ER+V SW++M+ Y L G+ + + + +I Y C++L
Sbjct: 157 CGSLVSARL-LFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMI--AGYIRCNDL 213
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
++ G+ ++ MI N +L + I CG + ++ GK
Sbjct: 214 EE---GERLFVRMIEENVFPNDIT---MLSLIISCGF---------------VGAVQLGK 252
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+H + L+ + L + +L+D Y KC ++ A F +K K +++W AM++ YA
Sbjct: 253 RLHAYILR-NGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYA-- 309
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q + A + F +M ++PN +++ +L+ CA +GK H Y+
Sbjct: 310 ----------QANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYI 359
Query: 289 LRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQKN- 332
+ +++ + ALI + + + WN ++ YG G +K
Sbjct: 360 DKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKAL 419
Query: 333 --------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
EG FE M ++ + P +E Y CMVDL
Sbjct: 420 KLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDL 479
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS---- 406
L RAG D+ ++ MP P+ A C N ++ E AAR L LEP +
Sbjct: 480 LGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYK 539
Query: 407 ---------------------------------------SGKVHSFIAGDTSHSLVHKIS 427
+G VH F GDT+H L+ KIS
Sbjct: 540 VLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKIS 599
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
E L + ++K+ GY+ K HSEKLA+AFGLIST+PG+P+RV+
Sbjct: 600 EMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVV 659
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ TK +SK K R II+ D RFHHF +G+CSCG YW
Sbjct: 660 KNLRICDDCHTVTKLLSKIYK----RVIIVRDRNRFHHFREGSCSCGGYW 705
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 34/232 (14%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K S +S+ + GKEIH +K + L SD+ V N+LM Y++C L A F K+ ++ +
Sbjct: 117 KACSQISVARMGKEIHGFSVK-NGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDV 175
Query: 216 VSWNAMLAGYA--LGGFREE--------ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
VSW+ M+ Y GF + I G+ + D E F RMI+ ++ PN I++
Sbjct: 176 VSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITM 235
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
++ +C V +LGK +H Y+LR+ G G + +L+DMYG+
Sbjct: 236 LSLIISCGFVGAVQLGKRLHAYILRN----------------GFGMSLALATALVDMYGK 279
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
CG I+ F+ MK + M + M+ A+A D +M
Sbjct: 280 CGEIRSARA--IFDSMKNKDVM-----TWTAMISAYAQANCIDYAFQLFVQM 324
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 16/84 (19%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL ++ M + D++ ++ + VL AC+Q+ ++GKEIHG+ +++
Sbjct: 93 ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKN-------------- 138
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
GL + FV N+L+ MY CG++
Sbjct: 139 --GLVSDVFVVNALMQMYSECGSL 160
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 164/602 (27%), Positives = 270/602 (44%), Gaps = 153/602 (25%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+ +F++ +N + + +++ +E ++ F L++ V K+ + L
Sbjct: 94 ISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAAL 153
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--KDFSNLSLLKH 166
+ VG+ ++ ++ E ++ V+ ++DM++K + A F+E + N S+L
Sbjct: 154 SNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIW 213
Query: 167 GKEIHPHHLKKDDLESDLLVN----------NSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
IH + D +++ L + NSL++ + K + A F K+ +K++V
Sbjct: 214 NVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVV 273
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SW M + GF+Q GD E ALE F M++ +PN ++ L+ACA++
Sbjct: 274 SWTTM------------VNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIG 321
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLID 321
G IH Y+ + +L+ +G AL+ + + G +W+ +I
Sbjct: 322 ALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIW 381
Query: 322 MYGRCGAIQK---------------------------------NEGWRYFEMMKKEYNME 348
+ G +K NEG ++F+ M++ Y +E
Sbjct: 382 GWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIE 441
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----SAEPC------NPDIAEHAARH 398
P+M+ Y +VD+L RAG+ D+ L F++ MP P A C N ++AE A++
Sbjct: 442 PSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKK 501
Query: 399 LFELEPLSSG-------------------------------------------KVHSFIA 415
L +LEP G K+H F+A
Sbjct: 502 LLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVA 561
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP-------------ACG-HSEKLALAFGL 461
GD +H+ +I KL + + ++ GY K I A G HSEKLALAFG+
Sbjct: 562 GDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGI 621
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
+ST PG+ +R++KNLR+C DCHS KY SK K REII+ D RFHHF DG CSCGD
Sbjct: 622 VSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSK----REIILRDMKRFHHFNDGVCSCGD 677
Query: 522 YW 523
YW
Sbjct: 678 YW 679
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 152/577 (26%), Positives = 256/577 (44%), Gaps = 160/577 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKD 110
+F+KM ER++ SWT+MM Y GYY E + LF ++ DE V AC L+D
Sbjct: 324 LFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLED 383
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ V+ ++++ + + +LD++ KCG+++ A FE+ + +
Sbjct: 384 FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASW------ 437
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
NS++D + + + A F+KI +K +VSWN M+ Y
Sbjct: 438 -----------------NSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDL 480
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E + E F +M ++++P+ +L +L++CA+V G ++ Y+ +
Sbjct: 481 FNE------------SFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEK 528
Query: 291 HHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK---- 331
+ I + +G ALI + G + FVW +++ Y G +
Sbjct: 529 NEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDL 588
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+EG++YF ++ YN+ P + Y CMVDLL
Sbjct: 589 YLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLG 648
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK--- 409
R G ++T+ F+++MP EP S C N ++AE A + L E++P ++G
Sbjct: 649 RVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVL 708
Query: 410 ----------------------------------------VHSFIAGDTSHSLVHKISEK 429
VH F+A + +S
Sbjct: 709 LSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNL-------VSAD 761
Query: 430 LMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
++ + +I++ +K+ HSE+LA+AFGLI+ SP+RV+ ++RMC DCHS
Sbjct: 762 ILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDCHSVM 821
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +S+A +REI++ DNYRFH F DG CSC DYW
Sbjct: 822 KLISQA----YDREIVIRDNYRFHRFTDGHCSCKDYW 854
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/386 (25%), Positives = 174/386 (45%), Gaps = 90/386 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV---------------------ELCAFLGMF 62
T+ + C K +++LG +VH ++ CG E+C +F
Sbjct: 135 TFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQ---LF 191
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHR 112
EKM R+V SW +M+ Y + G Y E ++LF ++ GV C++LKD
Sbjct: 192 EKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLE 251
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
+GK ++ Y++ K + ++DM+ KCG+M+ A G
Sbjct: 252 MGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLS------------------ 293
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ D+ E D+++ +L+ Y K + A F K+ ++ LVSW M++GY GG+
Sbjct: 294 ---RCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYC 350
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
E +LE F +M ++ P+ ++L VL+AC ++ F LG+ +H +++ +
Sbjct: 351 E------------SLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTY- 397
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G+ F+ N+L+D+Y +CG + +E R FE + + +
Sbjct: 398 ---------------GMLVDGFLGNALLDLYAKCGKL--DEALRTFEQLPCK-----SAA 435
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMP 378
+ M+D R+G D +F K+P
Sbjct: 436 SWNSMLDGFCRSGGVDKARDFFNKIP 461
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 66/168 (39%), Gaps = 30/168 (17%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
HL +L D + + ++ F L AH S + + WN +L G +E
Sbjct: 57 HLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQE 116
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ LE + M+ + + + ++ AC + KLG E+HG +L+
Sbjct: 117 V------------LECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILK--- 161
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G G + N+L+ +Y +CG ++ E + FE M
Sbjct: 162 -------------CGFGRNKSLNNNLMGLYSKCGKLK--EVCQLFEKM 194
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 162/607 (26%), Positives = 265/607 (43%), Gaps = 167/607 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+ ++MP+++ +WT+M V+GY D G ++ E D + V++
Sbjct: 219 VLDEMPDKDALTWTTM-----VVGYVRRG--------DVGAARSVFEEVDVKFDV-VWNA 264
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIHPH 173
MIS V++ F RM + +E F+ N HGK +H
Sbjct: 265 MISGYVHSGM-----VVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQ 319
Query: 174 --HLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY----- 225
L+ + + E+ L VNN+L+ Y+KC + VA F +K K +VSWN +L+GY
Sbjct: 320 ITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC 379
Query: 226 ---ALGGFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
A+ F E ++G+ G E AL+ F+RM D++P + +G ++A
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISA 439
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVW 316
C ++ K GK++HG++++ + S G ALI++ S W
Sbjct: 440 CGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSW 499
Query: 317 NSLIDMYGRCGAIQK---------------------------------NEGWRYFEMMKK 343
N++I G+ G ++ +EG++YFE MK+
Sbjct: 500 NAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKR 559
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAE 393
++ + P + Y ++DLL RAG+ + + +K MPFEP+ + + ++
Sbjct: 560 DFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGA 619
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
HAA LF++ P G KV
Sbjct: 620 HAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKV 679
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLA 456
H F+ GDT H HK+ + L + + ++K+GY+ HSE+LA
Sbjct: 680 HVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLA 739
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+ FGL+ PG+ + V+KNLR+C DCH+ ++SKA REI++ D RFHHF DG
Sbjct: 740 VGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVG----REIVVRDVRRFHHFKDGE 795
Query: 517 CSCGDYW 523
CSCG+YW
Sbjct: 796 CSCGNYW 802
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L M + C TYA C +L +L+ G Q+H HL+ G E G
Sbjct: 417 LFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYA 476
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
MF MP + SW +M+ G+ E + LF ++ EG+Y
Sbjct: 477 RCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIY 528
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 175/650 (26%), Positives = 266/650 (40%), Gaps = 215/650 (33%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM---------- 61
PD+ T++ L C +L + LG Q+H+ + G+E C + M
Sbjct: 252 QPDQYTLSSML--SACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSL 309
Query: 62 ------FEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLIDEGV----------YKA 104
F +MP+ NV +WT+++ Y G + +++ LF +++EG+ KA
Sbjct: 310 HNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKA 369
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------- 155
C+ L D G+ ++ + + V ++ M+ + G +E A F++
Sbjct: 370 CANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSF 429
Query: 156 -------------KDF---------------------SNLSLLKHGKEIHPHHLKKDDLE 181
+D+ +++ +L G+ +H LK
Sbjct: 430 SGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAG-FG 488
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD + NSL+ Y++C YL A F ++ +++SW +M I+G ++G
Sbjct: 489 SDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSM------------ISGLAKHG 536
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
ALE F MI ++PN ++ VL+AC+ K
Sbjct: 537 YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVK---------------------- 574
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
EG +F MM+K + + P ME Y CMVDLL
Sbjct: 575 -------------------------------EGKEHFRMMQKHHGLIPRMEHYACMVDLL 603
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------- 404
R+G +D L+F+ +MP + + C N DI E AA H+ +LEP
Sbjct: 604 GRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYV 663
Query: 405 -LSS-----------------------------------GKVHSFIAGDTSHSLVHKISE 428
LS+ +H F AGDTSH +I
Sbjct: 664 LLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYT 723
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLIS-TSPGSPLRVI 473
KL L EIK +GY +K + HSEK+A+AFGLIS TS P+R+
Sbjct: 724 KLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIF 783
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCHS KYVSKA REII+ D+ RFH DG CSCG+YW
Sbjct: 784 KNLRVCVDCHSALKYVSKATG----REIILRDSNRFHRMKDGECSCGEYW 829
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 58/256 (22%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A +F+ + ER V WT ++ Y GY +E V LF +++ G
Sbjct: 204 DLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPD--------- 254
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
Y +S M C + L + G+++H
Sbjct: 255 -----QYTLS--------------SMLSAC---------------TELGSFRLGQQLHSL 280
Query: 174 HLKKDDLESDLLVNNSLMDFYAKC---RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
L+ LESD V+ L+D YAK + L A F+++ + ++++W A+L+GY G
Sbjct: 281 ALRLG-LESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGS 339
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
++ + F +M+ ++PN I+ S +L ACA + G++IH + ++
Sbjct: 340 QDN-----------QVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVK 388
Query: 291 HHIQLSTGVGIALISI 306
++ VG AL+S+
Sbjct: 389 SNLADLNVVGNALVSM 404
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 28/144 (19%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V +L+D +AK L F + ++ +V W ++ YA G+ +E
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDE-------- 238
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+E F M++ QP+ +LS +L+AC ++ F+LG+++H LR
Sbjct: 239 ----AVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALR----------- 283
Query: 302 ALISIQGLGTGSFVWNSLIDMYGR 325
GL + S V L+DMY +
Sbjct: 284 -----LGLESDSCVSCGLVDMYAK 302
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 167 GKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFS--KIKQKHLVSWNAMLA 223
G+ + H L+ L E+D +V NSL+ Y+KC + A F + + LVSW AM +
Sbjct: 66 GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL-GK 282
+ G E AL F ++ + PN +L AC + F L G
Sbjct: 126 CLSRNGAEAE------------ALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGG 173
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ G V + + GT V +LIDM+ + G
Sbjct: 174 AVLGLVFK---------------LGFWGTDVSVGCALIDMFAKNG 203
>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 165/580 (28%), Positives = 250/580 (43%), Gaps = 145/580 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE+M ++V +W +M+ Y+ G +E+ ++LF ++++ ++ DV +
Sbjct: 96 VFERMRFKDVVTWNAMVTGYSQNGRFEDALSLF------------GKMREEKIELDVVTW 143
Query: 121 MISIKFEGNACVKRPVLDMFIK-CG---RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
I +D+F + CG R + + +++ L HGKE H + +K
Sbjct: 144 SSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVK 203
Query: 177 ------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAGYALG 228
+D DL V N+L+D YAKC+ L+VA F +I K + +V+W M+ GYA
Sbjct: 204 FILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYA-- 261
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q+GD AL+ FS M + D + PN ++S VL ACA++ K GK+IH
Sbjct: 262 ----------QHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHA 311
Query: 287 YVLRHH----------------IQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAI 329
YVLR S V A + + + V W SL+ YG GA
Sbjct: 312 YVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGAA 371
Query: 330 -------------------QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+ G F M K++ ++P +E Y CM DL RAG+ +
Sbjct: 372 LVLDGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEA 431
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------- 409
+ M EP+ C N ++AE AA+ L EL+ + G
Sbjct: 432 TRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANA 491
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+ +F GD +H KI E L L I
Sbjct: 492 RRWKDVARIRYLMKRTGIKKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRI 551
Query: 438 KKIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K IGY+ + HSEKLALA+ +++ PG+P+R+ KNLR+CGD H
Sbjct: 552 KAIGYVPQTNFSLHDVDDEEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDFH 611
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S Y+S E EII+ D+ RFH F +G+CSC YW
Sbjct: 612 SAITYISMIV----EHEIILRDSSRFHQFKNGSCSCKGYW 647
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 32/170 (18%)
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-----------LGGFRE 232
V N+L+D YAKC ++ A F +++ K +V+WNAM+ GY+ G RE
Sbjct: 74 FFVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMRE 133
Query: 233 E------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
E I+G+ Q G G A++ F +M +PN ++L +L+ACA V
Sbjct: 134 EKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 193
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GKE H Y ++ ++ ++ V N+LIDMY +C +++
Sbjct: 194 GKETHCYSVKFILKGEHNDDTDDLA---------VINALIDMYAKCKSLE 234
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 186/708 (26%), Positives = 282/708 (39%), Gaps = 212/708 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA---------HLIVCGVEL---- 55
LL+S D PD T + C N+++G+ +H L+VC +
Sbjct: 302 LLESGDGLIPD--VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359
Query: 56 -CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
C L +F K+ ++V SW SM+G Y+ G+ E +L + E
Sbjct: 360 KCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTI 419
Query: 100 -GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------ 146
+ AC E + + ++ Y + F+ + + + KCG +
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479
Query: 147 ---------------------------EMASGEFEEKDFS---------NLSLLKHGKEI 170
EM DFS L LL++GKEI
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L+ + LE + V SL+ Y C F + K+ V WNAML+GY+
Sbjct: 540 HGFVLR-NGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNEL 598
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E AL F +M+ ++P+ I+++ +L AC+Q+ LGKE+H + L+
Sbjct: 599 PNE------------ALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALK 646
Query: 291 HHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK---- 331
+ + V +L+ + LG + WN +I +G G K
Sbjct: 647 NSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVEL 706
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+EG Y M+ Y +EP +E Y C++D+L
Sbjct: 707 FEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG 766
Query: 363 RAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEP-------- 404
RAG+ ++ LNF+ +MP EP + + ++ E A L LE
Sbjct: 767 RAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYIL 826
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ GKV+SFIAG+ S+ +I +
Sbjct: 827 LSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIRKM 886
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
RL +I +IGY KR GHSEK+A+ FG ++T G+ LR+ KN
Sbjct: 887 WNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTTLRISKN 946
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ KY+SKA K REI++ DN RFHHF G CSCGDYW
Sbjct: 947 LRICRDCHNAAKYISKAAK----REIVIRDNKRFHHFKKGICSCGDYW 990
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 156/379 (41%), Gaps = 95/379 (25%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L L S+ PD T+ + + C ++ LG VH + G+ + F+G
Sbjct: 198 LELISVTEFQPD--NFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALY 255
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+F+KMPE+N+ SW S++ ++ G++ E F L++ G
Sbjct: 256 GKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVAT 315
Query: 101 ---VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG------------- 144
+ CS + VG ++ + + V ++DM+ KCG
Sbjct: 316 MVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE 375
Query: 145 ----------------------------RMEMASGEFEEKDFSNLSLLKHGKE------- 169
+M M E + + L+LL E
Sbjct: 376 NKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSL 435
Query: 170 --IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+H + L+ + L+NN+ + YAKC L A F + K + SWNA++ G+A
Sbjct: 436 RALHGYSLRH-SFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHA- 493
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
Q GD AL+F+ M + + P+ S+ +L AC ++ + GKEIHG+
Sbjct: 494 -----------QNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGF 542
Query: 288 VLRHHIQLSTGVGIALISI 306
VLR+ +++++ V ++L+S+
Sbjct: 543 VLRNGLEMNSFVAVSLLSL 561
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 95/413 (23%), Positives = 169/413 (40%), Gaps = 86/413 (20%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY 85
++ Q+C + N+E+G ++ L V F G F V + T ++ MY++ GY
Sbjct: 111 GMLLQKCGQYKNVEIGRKLDEMLCVSS----QFSGDF-------VLN-TRLITMYSICGY 158
Query: 86 YEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
E +F L+++ +++ + L V ++YD I E
Sbjct: 159 PLESRLVFDRLLNKNLFQ-WNALVSGYVRNELYDEAIHTFLE------------------ 199
Query: 146 MEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
++ EF+ +F+ L+K GK +H +K L DL V N+++ Y K
Sbjct: 200 -LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMG-LIMDLFVGNAMIALYGK 257
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSR 252
C +L A F K+ +++L+SWN+++ G++ GF E + GDG
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDG--------- 308
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
+ P+ ++ +L C+ +G IHG ++ GL
Sbjct: 309 -----LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK----------------LGLVHE 347
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
V N+LIDMY +CG + +E F ++ + ++ + M+ +R G +T +
Sbjct: 348 LMVCNALIDMYSKCGCL--SEAAILFRKIENK-----SVVSWNSMIGAYSREGFVFETFD 400
Query: 373 FMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHK 425
++KM E E I L E E LS +H + HS +K
Sbjct: 401 LLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGY---SLRHSFQYK 450
>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
Length = 637
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 172/653 (26%), Positives = 278/653 (42%), Gaps = 199/653 (30%)
Query: 8 LLLQSMDLTNPDECTVT---YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
++ ++D + E T Y + C + +L+ +HAHL FL
Sbjct: 47 IIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLI 106
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+ MP R++ SWTS++ Y A +
Sbjct: 107 HLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY-----------------------AQN 143
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
++ D +G + M+ +F+ N +L K +SG
Sbjct: 144 DMPDEALG--LLPGMLRGRFKPNGFTFASLL----KAAGASASSGI-------------- 183
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH +K D D+ V ++L+D YA+C + +A F +++ K+ VSWNA++AG+A
Sbjct: 184 GEQIHALTVKYD-WHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ GDGET L F+ M + + + S V +A A + + GK +H
Sbjct: 243 ------------RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHA 290
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQ 330
++++ +LS VG ++ + +GS + WNS++ + + G +
Sbjct: 291 HMIKSGERLSAFVGNTILDMYA-KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ EG +YF+MMK EYN+EP ++ Y +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTV 408
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS 407
VDLL RAG +D L F+ KMP +P++A C N I + AA H+FEL+P +
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G VH F+A D +H
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSE 528
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I +K + +I+K GY+ ++ HSEK+ALAF LI+ G+ +
Sbjct: 529 EIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATI 588
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R++KN+R+CGDCHS +Y+SK K REI++ D RFHHF G+CSCGDYW
Sbjct: 589 RIMKNIRICGDCHSAFRYISKVFK----REIVVRDTNRFHHFSSGSCSCGDYW 637
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 29/173 (16%)
Query: 6 VTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
TLL+ + N E T TY+ +F + LE G VHAH+I G L AF+G
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY---- 102
+F+++ +++V +W SM+ + G E V F + GV+
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368
Query: 103 ------KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + GK +D M E V+D+ + G + A
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 177/633 (27%), Positives = 251/633 (39%), Gaps = 193/633 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL--------------GMFEKM 65
TY I + C L L+LG Q+H +I G V +C+ L G+ +++
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
E +V SWT+M+ Y + E + LF E+++ + D + +I
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLF------------QEMENQGIRSDNIGFSSAI- 523
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC + + L G++IH E DL
Sbjct: 524 ---SAC---------------------------AGIQALNQGQQIHAQSYISGYSE-DLS 552
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+ YA+C + A+ F KI K +SWNA+ I+GF Q G E
Sbjct: 553 IGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNAL------------ISGFAQSGHCEE 600
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
AL+ FS+M Q ++ N + ++A A K GK+IH +++ T LI
Sbjct: 601 ALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLIT 660
Query: 305 ------SIQGLGTGSF--------VWNSLIDMYGRCGAIQK------------------- 331
SI+ F WN++I Y + G +
Sbjct: 661 LYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVT 720
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
NEG YF M KE+ + P E Y C+VDLL RA F+++M
Sbjct: 721 FVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEM 780
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P EP + C N +I E AARHL ELEP S
Sbjct: 781 PIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRD 840
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
+H+F GD H L +I E + L +IGY+
Sbjct: 841 RTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQ 900
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K A HSEKLA+AFGL+S + P+RVIKNLR+C DCH+ K+VS
Sbjct: 901 DRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVS 960
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K R I++ D YRFHHF G CSC DYW
Sbjct: 961 KISN----RAIVVRDAYRFHHFEGGVCSCKDYW 989
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 157/384 (40%), Gaps = 106/384 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY +F+ C +L ++HA + G + LG +F+ +
Sbjct: 12 TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK-DHRVG 114
P NV W ++ +++ LF L+I E V +ACS K +V
Sbjct: 72 PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD-------------- 157
+ ++ +I F + V P++D++ K G +++A FE KD
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191
Query: 158 ------------------------FSN-------LSLLKHGKEIHPHHLKKDDLESDLLV 186
FS+ + L K G+++H + K L S+ V
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF-IVKWGLSSETFV 250
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L+ Y++ L A FSK+ ++ +S+N++++G A GF + A
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR------------A 298
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L+ F +M M+P+ ++++ +L+ACA V GK++H YV++
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK---------------- 342
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQ 330
G+ + + SL+D+Y +C I+
Sbjct: 343 MGMSSDLIIEGSLLDLYVKCFDIE 366
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S LV N L+D Y+K ++ +A F ++ K VSW AM I+G +Q G
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM------------ISGLSQNG 192
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ A+ F +M ++ + P S VL+AC +++ FKLG+++HG++++
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK----------- 241
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
GL + +FV N+L+ +Y R G + E + F M + + Y ++ L
Sbjct: 242 -----WGLSSETFVCNALVTLYSRWGNLIAAE--QIFSKMHRRDRI-----SYNSLISGL 289
Query: 362 ARAGQFDDTLNFMKKMPFE 380
A+ G D L +KM +
Sbjct: 290 AQRGFSDRALQLFEKMQLD 308
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 107/554 (19%), Positives = 205/554 (37%), Gaps = 131/554 (23%)
Query: 16 TNPDECTVTYALIFQRCPKLNN-LELGIQVHAHLI---------VCG--VELCAFLG--- 60
PDE T +A + + C ++ Q+HA +I VC ++L + G
Sbjct: 107 VTPDEST--FASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVD 164
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACS 106
+FE++ ++ SW +M+ + G +E + LF + + V AC+
Sbjct: 165 LAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACT 224
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE------------ 154
+++ ++G+ ++ +++ V ++ ++ + G + A F
Sbjct: 225 KIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNS 284
Query: 155 ------EKDFSN---------------------LSLLK---------HGKEIHPHHLKKD 178
++ FS+ SLL GK++H + +K
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ SDL++ SL+D Y KC ++ AH F + +++V WN ML Y
Sbjct: 345 -MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYG------------ 391
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q G+ + F +M + PN + +L C + LG++IH V++ Q +
Sbjct: 392 QLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV- 450
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+V + LIDMY + G + G + +++E + + M+
Sbjct: 451 ---------------YVCSVLIDMYAKHGELDTARG--ILQRLREE-----DVVSWTAMI 488
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDT 418
+ F + L ++M + ++ A A + L S+I+G
Sbjct: 489 AGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG-- 546
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPG-SPLRVIKNLR 477
+S I L+ LY+ CG ++ LAF I S +I
Sbjct: 547 -YSEDLSIGNALVSLYAR------------CGRAQDAYLAFEKIDAKDNISWNALISGFA 593
Query: 478 MCGDCHSPTKYVSK 491
G C + S+
Sbjct: 594 QSGHCEEALQVFSQ 607
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 184/694 (26%), Positives = 289/694 (41%), Gaps = 199/694 (28%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL-----GMFEKMPE---------- 67
V+ AL P L +G QVHA+ + G EL +F+ M+ KM +
Sbjct: 199 VSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGS 257
Query: 68 ---RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
R++ +W +++ + E + ++ EGV ACS L+ R G
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317
Query: 115 KDVYDYMI-SIKFEGNACVKRPVLDMFIKCGRM-----------------------EMAS 150
K+++ Y + + + N+ V ++DM+ C ++ A
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQ 377
Query: 151 GEFEEKDF-------SNLSLLKHG------------------KEIHPHHLKKDDLESDLL 185
E++E+ + LL + KE + K L+ D
Sbjct: 378 NEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRF 437
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+LMD Y++ + +A F K++ + LV+WN ++ GY R E +
Sbjct: 438 VQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSE-RHEDALLMLHKMQIL 496
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+ R + ++PN+I+L +L +CA + GKEIH Y +++++ VG AL+
Sbjct: 497 ERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 556
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQK------------------- 331
+ Q WN ++ YG G Q
Sbjct: 557 MYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVT 616
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
NEG + F MKK+Y +EP+ + Y C+VDLL RAG+ + + +
Sbjct: 617 FISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLI 676
Query: 378 P--FEPSSAEPC---------NPDIAEHAARHLFELEP-------------LSSG----- 408
P F+ + A N +I E AA++L +LEP S+G
Sbjct: 677 PRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKA 736
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+VH F+AGD+SH K+ L L+ ++K GY+
Sbjct: 737 TEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYI 796
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K I CGHSEKLA+AFG+++TSPG+ +RV KNLR+C DCH TK++
Sbjct: 797 PDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFI 856
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK +REII+ D RFHHF +G CSCGDYW
Sbjct: 857 SKVV----DREIILRDVRRFHHFKNGTCSCGDYW 886
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 131/343 (38%), Gaps = 92/343 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------------ELCAF 58
PD + + + L +++LG Q+HAH+ G + A
Sbjct: 91 PD--NFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 148
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+++ ERN SW S++ +E + F ++DE V + L
Sbjct: 149 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTL---------- 198
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
+ + + C M G L GK++H + L+K
Sbjct: 199 ------------------VSVALACSNFPMPEG------------LLMGKQVHAYGLRKG 228
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+L S + N+L+ Y K L + + + LV+WN +L +
Sbjct: 229 ELNS--FIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVL------------SSLC 274
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q ALE+ M+ ++P+ ++S VL AC+ ++ + GKE+H Y L++
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKN------- 327
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
L SFV ++L+DMY C Q G R F+ M
Sbjct: 328 --------GSLDENSFVGSALVDMY--CNCKQVLSGCRVFDGM 360
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 125/289 (43%), Gaps = 43/289 (14%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L + GK+IH H K + V N+L++ Y KC + F +I +++
Sbjct: 101 KAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 160
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+ + E ALE F M+ D++P++ +L V AC+
Sbjct: 161 VSWNSL------------ISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNF 208
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+G +GK++H Y LR SF+ N+L+ MYG+ G + +
Sbjct: 209 PMPEGLLMGKQVHAYGLRKG-----------------ELNSFIINTLVAMYGKMGKLASS 251
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+++ + + + ++ L + QF + L ++++M E +
Sbjct: 252 ------KVLLGSFEGRD-LVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSV 304
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
A H LE L +GK +H++ + S + L+ +Y K++
Sbjct: 305 LPACSH---LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 182/695 (26%), Positives = 283/695 (40%), Gaps = 212/695 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------MFEKMPE------ 67
T T+A Q C + ++LG+Q+HA ++ G L ++ F KMPE
Sbjct: 160 TYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFG 219
Query: 68 ----RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRV 113
+++ +W SM+ + G Y E + FY L + + A L
Sbjct: 220 NLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLN 279
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF------------ 158
GK+++ Y I F+ N V ++DM+ KC M F+ KD
Sbjct: 280 GKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQ 339
Query: 159 ---------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
L+ L KEIH + ++ SD +
Sbjct: 340 NKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGG--LSDPV 397
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+++D Y +C + A F I+ K +VSW +M++ Y G +
Sbjct: 398 LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANK------------ 445
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
ALE FS M +T ++P+ ++L +L+A + K GKEIHG+++R L + L+
Sbjct: 446 ALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVD 505
Query: 306 IQGLGTGS----------------FVWNSLIDMYGRCG----AIQ--------------- 330
+ GS +W ++I YG G A++
Sbjct: 506 MYAR-CGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHI 564
Query: 331 --------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
NEG + E+MK EY +EP E Y C+VDLL R ++ +K
Sbjct: 565 TFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKS 624
Query: 377 MPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG------------------ 408
M EP+ C N +I E AA L EL+ + G
Sbjct: 625 MQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDV 684
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK---- 439
K+H+F++ D H KI +KL ++ ++K+
Sbjct: 685 EEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGY 744
Query: 440 ----------IGYMKRIPAC-GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+G +++ GHSE+LA+A+GL++T+ G+P+RV KNLR+CGDCHS
Sbjct: 745 VAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTL 804
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VS R ERE+I+ D RFHHF DG CSCGD+W
Sbjct: 805 VS----RFFERELIVRDASRFHHFKDGMCSCGDFW 835
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 111/257 (43%), Gaps = 58/257 (22%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG L A + +F+KM ER++F+W +MMG Y G E + G + E++
Sbjct: 5 CGSVLDAEM-IFDKMSERSIFTWNAMMGGYVSNG--EAL----------GALEMYREMRH 51
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
V D Y + + +K G V D+F G EI
Sbjct: 52 LGVSFDSYTFPVLLKACG------IVEDLFC-------------------------GAEI 80
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGG 229
H +K +S + V NSL+ YAKC + A F ++ ++ +VSWN++++ Y+ G
Sbjct: 81 HGLAIKYG-CDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNG 139
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
E AL FS M++ + NT + + L AC KLG +IH +L
Sbjct: 140 MCTE------------ALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAIL 187
Query: 290 RHHIQLSTGVGIALISI 306
+ L V AL+++
Sbjct: 188 KSGRVLDVYVANALVAM 204
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC + A F K+ ++ + +WNAM+ GY G+ ALE + M
Sbjct: 2 YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGY------------VSNGEALGALEMYREM 49
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
+ ++ + +L AC V+ G EIHG +++ G +
Sbjct: 50 RHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKY----------------GCDSFV 93
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
FV NSL+ +Y +C I N + F+ M
Sbjct: 94 FVVNSLVALYAKCNDI--NGARKLFDRM 119
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 184/707 (26%), Positives = 282/707 (39%), Gaps = 210/707 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ Q M+ +TY + L+ G VH+ ++ G E +G
Sbjct: 214 IFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYA 273
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+FEK+ R++ +W +M+G GY+EE ++ + EGV
Sbjct: 274 KCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVI 333
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
AC GK+++ + F + V+ ++ M+ +CG ++ A F++ KD
Sbjct: 334 LLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKD 393
Query: 158 F---------------------------------------------SNLSLLKHGKEIHP 172
S+ + L+ G+ IH
Sbjct: 394 VISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIH- 452
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ + L +D V N+L++ Y+ C +K A F ++ Q+ +V++NAM+ GYA
Sbjct: 453 QQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNL-- 510
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
G+ AL+ F R+ + ++P+ ++ +L ACA + +EIH V +
Sbjct: 511 ----------GKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGG 560
Query: 293 IQLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK----- 331
T VG AL+S GSF WN++I + G Q
Sbjct: 561 FFSDTSVGNALVSTYA-KCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLF 619
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
EG RYF M +++ + P +E Y CMVDLL R
Sbjct: 620 ERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGR 679
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL----------- 402
AGQ D+ +K MPF+ ++ C N +AE AA +L
Sbjct: 680 AGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVAL 739
Query: 403 ---------------------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKL 430
EP S K+H F+A D SH KI +L
Sbjct: 740 SHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDRSHPQSEKIYAEL 799
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
RL +K GY+ K C HSE+LA+A+GLIST PG+ + + KNL
Sbjct: 800 DRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTPPGTRIHIFKNL 859
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH+ TK++SK +REII D RFHHF DG CSCGDYW
Sbjct: 860 RVCPDCHTATKFISKIV----DREIIARDVNRFHHFKDGVCSCGDYW 902
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/440 (23%), Positives = 172/440 (39%), Gaps = 116/440 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGV-----ELCAFLGMF-------------EKMP 66
Y + +RC ++ +L G QVH H+I + A + M+ +K+
Sbjct: 26 YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85
Query: 67 --ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
ER V SW +M+ Y GY E+ + L + G+ +C G
Sbjct: 86 YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWG 145
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD----------------- 157
++++ + + V +L+M+ KCG +E A F++ +
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205
Query: 158 -------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
FS+ + LK GK +H L ESD V
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGH-ESDTAV 264
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+ YAKC K F K+ + L++WN M+ G A GG+ EE A
Sbjct: 265 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEE------------A 312
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
E +++M + + PN I+ +L AC GKEIH V +
Sbjct: 313 SEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK---------------- 356
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
G + V N+LI MY RCG+I K+ + +M++K+ + + M+ LA++G
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSI-KDARLVFDKMVRKD------VISWTAMIGGLAKSGF 409
Query: 367 FDDTLNFMKKMPFEPSSAEP 386
+ L ++M + + EP
Sbjct: 410 GAEALTVYQEM--QQAGVEP 427
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 21/134 (15%)
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ A++ + Q Q N+ +L C +VK G+++H ++++H
Sbjct: 5 DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTV--------- 55
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+ N+LI+MY +CG+I++ ++ KK ME + + MV +
Sbjct: 56 -------PDQYTVNALINMYIQCGSIEEAR-----QVWKKLSYMERTVHSWNAMVVGYIQ 103
Query: 364 AGQFDDTLNFMKKM 377
G + L +++M
Sbjct: 104 YGYIEKALKLLRQM 117
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 173/659 (26%), Positives = 278/659 (42%), Gaps = 174/659 (26%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-- 60
+K L+L++ N + T + LI K ++LG Q+H H++ G F+G
Sbjct: 126 VKAYNLMLKNDGSFNLNRITFSTLLIL--ASKRGCVKLGRQIHGHVVKFGFMSYVFVGSP 183
Query: 61 ----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA 104
+F+++PE+NV + +++ G E+ LF+ + +
Sbjct: 184 LVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISW 243
Query: 105 CSELK---DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
S + + + +D D +K E + + CG +
Sbjct: 244 TSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACG---------------GV 288
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
L+ GK++H + + + D + ++ V ++L+D Y KC+ +K A F K+ K++VSW AM
Sbjct: 289 MALQEGKQVHAY-IIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAM 347
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
L GY G+ EE A++ FS M + ++P+ +L V+++CA + + G
Sbjct: 348 LVGYGQNGYSEE------------AVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEG 395
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQG-----------LGTGSF----VWNSLIDMYG-- 324
+ H L + V AL+++ G SF W +L+ Y
Sbjct: 396 AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQF 455
Query: 325 ---------------------------------RCGAIQKNEGWRYFEMMKKEYNMEPAM 351
R G ++K G + FE M E+ + P
Sbjct: 456 GKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEK--GNQIFESMINEHGIVPIQ 513
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFE 401
+ Y CM+DL +RAG+ ++ NF+ KMPF P + C N DI + AA L E
Sbjct: 514 DHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLME 573
Query: 402 LEP--------LSS-----------------------------------GKVHSFIAGDT 418
L+P LSS +VH F A D
Sbjct: 574 LDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDK 633
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLIST 464
S+ +I +L +L ++ K GY+ + + HSEKLA+AFGL+
Sbjct: 634 SNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFI 693
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG P+RV+KNLR+C DCH+ TKY+SK REI++ D RFH F DG CSCGD+W
Sbjct: 694 PPGLPIRVVKNLRVCSDCHNATKYISKIT----NREILVRDTARFHLFKDGTCSCGDFW 748
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 144/341 (42%), Gaps = 66/341 (19%)
Query: 7 TLLLQSMDLTNPDECTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKM 65
T LL ++ + ++ YA +F + P N + A+ + V +L F+ M
Sbjct: 44 TFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYL--FDAM 101
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-DEGVYK-----------ACSELKDHRV 113
P R+ SW S++ Y G + V + L++ ++G + S+ ++
Sbjct: 102 PRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKL 161
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G+ ++ +++ F V P++DM+ K G + A F+E
Sbjct: 162 GRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELP---------------- 205
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
E ++++ N+L+ +C ++ + F +++++ +SW +M
Sbjct: 206 -------EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSM------------ 246
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
ITGFTQ G A++ F M ++Q + + VL AC V + GK++H Y++R
Sbjct: 247 ITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY 306
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+ + FV ++L+DMY +C I+ E
Sbjct: 307 KDNI----------------FVASALVDMYCKCKNIKSAEA 331
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
K +H H +K L+NN L+ YAK + A F ++ +L SWN +L+ Y+
Sbjct: 28 AKNLHSHIIKTLPYPETFLLNN-LISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYS 86
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTD--MQPNTISL 265
G E I+G+ G +++ ++ M++ D N I+
Sbjct: 87 KLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITF 146
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-QGLGTGS----------- 313
S +L ++ KLG++IHG+V++ VG L+ + +G S
Sbjct: 147 STLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPE 206
Query: 314 ---FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
++N+LI RCG ++ ++ +FEM +++ + M+ + G D
Sbjct: 207 KNVVMYNTLIMGLMRCGRVEDSKRL-FFEMRERD------SISWTSMITGFTQNGLDRDA 259
Query: 371 LNFMKKMPFE 380
++ ++M E
Sbjct: 260 IDIFREMKLE 269
>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Glycine max]
Length = 975
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 169/579 (29%), Positives = 249/579 (43%), Gaps = 177/579 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F M + V SW +++G + G+ + ++LF +++D G+ D +
Sbjct: 458 VFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGM--------------DPDRF 503
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
I + + C R L L+ GKEIH L+ + L
Sbjct: 504 TIG--------------SLLLACAR---------------LKFLRCGKEIHGFMLR-NGL 533
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E D + SLM Y +C + + F K++ K LV WN M ITGF+Q
Sbjct: 534 ELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVM------------ITGFSQN 581
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL+ F +M+ ++P I+++GVL AC+QV +LGKE+H + L+ H+ V
Sbjct: 582 ELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVT 641
Query: 301 IALISI----------QGL-----GTGSFVWNSLIDMYGRCG----AIQ----------- 330
ALI + Q + VWN +I YG G AI+
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGR 701
Query: 331 ------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG +Y M+ Y ++P +E Y C+VD+L RAGQ + L
Sbjct: 702 PDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALK 761
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
+ +MP EP S C + +I E ++ L ELEP LS+
Sbjct: 762 LVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGK 821
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
G V+ F+ D S S KI + ++L +I K
Sbjct: 822 WDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISK 881
Query: 440 IGYMKRIPAC---------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
IGY K +C HSEKLA++FGL++T+ G+ LRV KNLR+C DCH+
Sbjct: 882 IGY-KPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHN 940
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VSK K R+II+ DN RFHHF +G C+CGD+W
Sbjct: 941 AIKLVSKVVK----RDIIVRDNKRFHHFKNGLCTCGDFW 975
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 160/381 (41%), Gaps = 93/381 (24%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----- 60
++L L+ + T+ T + + C + ++ELG VHA + G AF+G
Sbjct: 179 ISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIA 238
Query: 61 -------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF-YLLIDE------- 99
+FE M RN+ SW S+M + G + E +F LLI E
Sbjct: 239 MYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPD 298
Query: 100 -----GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
V AC+ + + R+G V+ + V ++DM+ KCG + A F+
Sbjct: 299 VATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFD 358
Query: 155 -------------------EKDFSNL-SLLKHG--------------------------- 167
E DF + LL+
Sbjct: 359 MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLL 418
Query: 168 --KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
KEIH + + L+ D LV N+ + YAKC L A F ++ K + SWNA++ +
Sbjct: 419 SLKEIHGYAFRHGFLK-DELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAH 477
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
A GF + +L+ F M+ + M P+ ++ +L ACA++K + GKEIH
Sbjct: 478 AQNGFPGK------------SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525
Query: 286 GYVLRHHIQLSTGVGIALISI 306
G++LR+ ++L +GI+L+S+
Sbjct: 526 GFMLRNGLELDEFIGISLMSL 546
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H L +D++++ ++ Y+ C + F K+K L +NA+L+GY+
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170
Query: 227 LGG-FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
FR+ I+ F LE S TD+ P+ +L V ACA V +LG+ +H
Sbjct: 171 RNALFRDAISLF---------LELLS---ATDLAPDNFTLPCVAKACAGVADVELGEAVH 218
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
L+ G + +FV N+LI MYG+CG ++ + FE M+
Sbjct: 219 ALALK----------------AGGFSDAFVGNALIAMYGKCGFVE--SAVKVFETMRNRN 260
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ Y C + G F + K++ S E PD+A
Sbjct: 261 LVSWNSVMYAC-----SENGGFGECCGVFKRLLI--SEEEGLVPDVA 300
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 34/209 (16%)
Query: 4 KNVTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM- 61
K++ L L MD +PD T+ L+ C +L L G ++H ++ G+EL F+G+
Sbjct: 485 KSLDLFLVMMDSGMDPDRFTIGSLLL--ACARLKFLRCGKEIHGFMLRNGLELDEFIGIS 542
Query: 62 -----------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID------ 98
F+KM +++ W M+ ++ E ++ F ++
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQ 602
Query: 99 ----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
GV ACS++ R+GK+V+ + + +A V ++DM+ KCG ME + F+
Sbjct: 603 EIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFD 662
Query: 155 ---EKDFSNLSLLKHGKEIHPHHLKKDDL 180
EKD + +++ G IH H LK +L
Sbjct: 663 RVNEKDEAVWNVIIAGYGIHGHGLKAIEL 691
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL---------IVCGVELCAFL-- 59
Q+ +++ D ++ + C N+ +G +VHA + +V + A
Sbjct: 81 QNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSA 140
Query: 60 --------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------- 100
G+F+ E+++F + +++ Y+ + + ++LF L+
Sbjct: 141 CGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPC 200
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V KAC+ + D +G+ V+ + +A V ++ M+ KCG +E A FE N
Sbjct: 201 VAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRN 260
Query: 161 L 161
L
Sbjct: 261 L 261
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 180/646 (27%), Positives = 274/646 (42%), Gaps = 187/646 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
Y+ + Q C K L+ G +VH H+ + G F+ +F++M
Sbjct: 72 VYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEM 131
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PER++ SW ++ Y +G +E +LF D +D + + I
Sbjct: 132 PERDLCSWNILISGYAKMGLLQEAKSLF----------------DKMPERDNFSWTAMI- 174
Query: 126 FEGNACVKRP--VLDMFIKCGRMEMASGEFEEKDFSNLSL---------LKHGKEIHPHH 174
G RP L++F RM S + F+ S L+ GKEIH +
Sbjct: 175 -SGYVRHDRPNEALELF----RMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGY- 228
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+ + L+SD +V ++L D Y KC ++ A F K+ + +V+W AM+ Y G R+E
Sbjct: 229 IMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKE- 287
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
GF + F+ ++++ ++PN + SGVL ACA +LGK++HGY+ R
Sbjct: 288 -GF----------DLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFD 336
Query: 295 LSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+ AL+ + + F W SLI Y + G Q +E RYFE
Sbjct: 337 PFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNG--QPDEAIRYFE 394
Query: 340 MM-----------------------------------KKEYNMEPAMEQYCCMVDLLARA 364
++ K++Y + + Y C++DLLAR+
Sbjct: 395 LLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARS 454
Query: 365 GQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK----- 409
GQFD+ N + KM +P S C N +A+ AA LFE+EP +
Sbjct: 455 GQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLA 514
Query: 410 --------------------------------------VHSFIAGDTSHSLVHKISEKLM 431
VH F+ GD SH +I+E L
Sbjct: 515 NIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLG 574
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
+L +K+ G++ K HSEKLA+AFG+IST G+P++V KNLR
Sbjct: 575 KLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLR 634
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K++SK R+II+ D+ RFH F DG CSC DYW
Sbjct: 635 TCVDCHTAIKFISKIT----NRKIIVRDSNRFHFFEDGHCSCRDYW 676
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 174/618 (28%), Positives = 261/618 (42%), Gaps = 191/618 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----GMFEKMPERNVFSWTSMMGMYNVL 83
IF+ P+ N I V+ +I G+ C F+ +F+ MPE++ SWT+++
Sbjct: 195 IFEEIPEKN-----IVVYNTMIT-GLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G ++E V+ F + EG +D F
Sbjct: 249 GLFKEAVDKFKEMGIEGF----------------------------------CMDQF-TF 273
Query: 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
G + A G F D GK+IH + + + D + ++ V ++L+D Y KCR +K A
Sbjct: 274 GSVLTACGGFLALD--------EGKQIHAY-IIRTDYQDNIFVGSALLDMYCKCRNVKYA 324
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K++ K+++SW AML GY G+ EE A+ F M + ++ P+
Sbjct: 325 EAVFRKMRHKNVISWTAMLVGYGQNGYSEE------------AVRIFCDMQRNEIHPDDF 372
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF--------- 314
+L V+++CA + + G + HG L + V ALI++ G GS
Sbjct: 373 TLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYG-KCGSLEHAHQLFHE 431
Query: 315 -------VWNSLIDMYG-----------------------------------RCGAIQKN 332
W +L+ Y R G ++K
Sbjct: 432 MKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEK- 490
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EP 386
G+ YFE M KE+ + P + Y CM+DLL+RAG+ ++ NF+ +MPF P +
Sbjct: 491 -GYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSS 549
Query: 387 C----NPDIAEHAARHLFELEP--------LSS--------------------------- 407
C N +I + AA L +LEP LSS
Sbjct: 550 CRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEP 609
Query: 408 --------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC---------- 449
KVH F A D S +I KL LY ++ + GY+ +
Sbjct: 610 GHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEKI 669
Query: 450 ----GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLA+AFGL+ G +RV+KNLR+CGDCH+ TKY+S R +REI++ D
Sbjct: 670 KMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYIS----RITQREILVRD 725
Query: 506 NYRFHHFVDGACSCGDYW 523
RFH F DG CSCGD+W
Sbjct: 726 AVRFHLFKDGVCSCGDFW 743
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 129/297 (43%), Gaps = 55/297 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ +P+ N+FSW +++ Y+ LGY +++ +F + +H V ++
Sbjct: 62 VFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVF------------DSMPNHDVVS--WNS 107
Query: 121 MISIKFEGNACVKRP--VLDMFIKCGRMEMASGEFEEKDF--SNLSLLKHGKEIHPHHLK 176
++S + GN + V +M +K G + + F SN + G++IH +
Sbjct: 108 LLS-GYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHG-QIF 165
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--- 233
K +S L V + L+D YAK ++ A+ F +I +K++V +N M+ G F E
Sbjct: 166 KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQ 225
Query: 234 ----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
ITG TQ G + A++ F M + + VL AC
Sbjct: 226 LFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLA 285
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
GK+IH Y++R Q + FV ++L+DMY +C ++ E
Sbjct: 286 LDEGKQIHAYIIRTDYQDNI----------------FVGSALLDMYCKCRNVKYAEA 326
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 41/226 (18%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+ L LK+ + + H + +L N+L+ Y+K YL+ F + +VS
Sbjct: 50 YGKLGDLKNARNVFDH-----IPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVS 104
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVK 276
WN++L+GYA G E ++ ++ M++ + N I+ S +L +
Sbjct: 105 WNSLLSGYAGNGLISE------------SVRVYNMMLKDGSVNLNRITFSTMLILSSNRG 152
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
LG++IHG + + G + FV + L+DMY + G I N+ R
Sbjct: 153 FVDLGRQIHGQIFKF----------------GYQSYLFVGSPLVDMYAKTGFI--NDANR 194
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
FE + E + Y M+ L R + MP + S
Sbjct: 195 IFEEIP-----EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDS 235
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 177/610 (29%), Positives = 263/610 (43%), Gaps = 173/610 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMY---NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F++MP R+ SWT+++ Y N L +E +N G K ++G
Sbjct: 214 LFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLN--------GTSK--------KLGV-A 256
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEI 170
++ MIS + L+ F +M M+ + +E F+ N + GKE+
Sbjct: 257 WNAMIS-----GYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEM 311
Query: 171 HPHHLK---KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY-- 225
H + LK + + VNN+L+ FY KC + +A F+K+ ++ LVSWN +L+GY
Sbjct: 312 HAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVN 371
Query: 226 ------ALGGFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
A F E I+G Q G E AL+FF+RM +P + +G
Sbjct: 372 VRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGA 431
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------IQGLGTGS 313
+ +C+ + K G+++H V+R+ + S G ALI+ I +
Sbjct: 432 IISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDA 491
Query: 314 FVWNSLIDMYGRCG----AIQ-----------------------------KNEGWRYFEM 340
WN++I G+ G AI+ EG +YF+
Sbjct: 492 ISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDS 551
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPD 390
M Y + P E Y ++DLL RAG+F + M+ MPFEP + C N D
Sbjct: 552 MHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNID 611
Query: 391 IAEHAARHLFELEPLSSG------------------------------------------ 408
+ AA LFEL+P G
Sbjct: 612 LGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVE 671
Query: 409 -KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSE 453
KVHSF+ GD +H V +I L +L E++KIGY +K HSE
Sbjct: 672 NKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSE 731
Query: 454 KLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513
KLA+A+G + G+ +RV KNLR+CGDCH+ K++SK REI++ D RFHHF
Sbjct: 732 KLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVG----REIVVRDGKRFHHFR 787
Query: 514 DGACSCGDYW 523
DG CSCGDYW
Sbjct: 788 DGKCSCGDYW 797
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N L+D Y+K L A F +I Q +V+ ++A Y+ G
Sbjct: 52 NRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRD 111
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIH 285
+ IT ++ DG A+E F M + + +P+ + + VL A A V + K +++H
Sbjct: 112 SVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLH 171
Query: 286 GYVLRHHIQLSTGVGIALIS 305
V++ T V ALIS
Sbjct: 172 CAVVKSGTGFVTSVLNALIS 191
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIV-CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
IF + P+ + + I + ++ V C E +F F +MPE+N+ SW M+ +G+
Sbjct: 350 IFNKMPERDLVSWNIILSGYVNVRCMDEAKSF---FNEMPEKNILSWIIMISGLAQIGFA 406
Query: 87 EEIVNLFYLLIDE----------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPV 136
EE + F + + G +CS L + G+ ++ ++ +E + +
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNAL 466
Query: 137 LDMFIKCGRMEMA 149
+ M+ +CG ++ A
Sbjct: 467 ITMYARCGVVDAA 479
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 184/717 (25%), Positives = 293/717 (40%), Gaps = 218/717 (30%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--- 59
+K +L +M L + + + Q C +L +LE G +VHA ++ G++ +L
Sbjct: 77 LKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 136
Query: 60 ---------------GMFEKMPERNVFSWTSMM-----GMYNVLGYY-EEIVNLFYLLID 98
+F+ + +RN+ SWT+M+ G N+ Y E + L D
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196
Query: 99 EGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+ + A + + +VG+ V+ + E V ++ M+ KCG + A F+
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256
Query: 155 ---EKDFSNLSLL---------------------------------------------KH 166
EK+ +LL +H
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H ++ + ++ V N+L+ Y KC LK A F + + +V+W AM+ GYA
Sbjct: 317 GKKVH-RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYA 375
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF +E A++ F RM Q ++P+ ++ + L +C+ + GK IH
Sbjct: 376 QLGFHDE------------AIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQ 423
Query: 287 YVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLID---MYGRCGA 328
++ L + AL+S+ Q W ++I +GRC
Sbjct: 424 QLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRC-- 481
Query: 329 IQKNEGWRYFEMMKKE-----------------------------------YNMEPAMEQ 353
E YFE MKK+ Y ++P +E
Sbjct: 482 ---REALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 538
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELE 403
Y C VDLL RAG ++ N + MPF+P SA + D+ E AA ++ +L+
Sbjct: 539 YSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLD 598
Query: 404 P--------LSS-----------------------------------GKVHSFIAGDTSH 420
P LS+ GKVH F D SH
Sbjct: 599 PDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSH 658
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I +L +L +IK+ GY+ K C HSE+LA+ +GL+ T P
Sbjct: 659 PEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPP 718
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+P+R++KNLR+CGDCH+ +K++SK REII D +RFHHFVDG CSCGD+W
Sbjct: 719 GTPIRIVKNLRVCGDCHTASKFISKVVG----REIIARDAHRFHHFVDGVCSCGDFW 771
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 190/654 (29%), Positives = 279/654 (42%), Gaps = 192/654 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+ LQ + P+ TY L+ C + N+L GI +H HLI G + FL
Sbjct: 62 NLNQALQVLS-QEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLI 120
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+K +R ++ W ++ + GY E+++L+ + GV
Sbjct: 121 NMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGV----- 175
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
D + Y +K ACV AS F +SLL +
Sbjct: 176 -------PSDRFTYTYVLK----ACV----------------ASEAF-------VSLLLN 201
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+EIH H L+ E + + +L+D YA+ + A F ++ K++VSW+AM+A Y+
Sbjct: 202 GREIHGHILRHG-FEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYS 260
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
G E ALE F +M+ D+ PN++++ VL ACA + + GK +
Sbjct: 261 KNGKPLE------------ALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLM 308
Query: 285 HGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLIDMYGRCG-- 327
HGY+LR + V AL+++ LG F WNSLI YG G
Sbjct: 309 HGYILRRGLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFG 368
Query: 328 --AIQ-----------------------------KNEGWRYFEMMKKEYNMEPAMEQYCC 356
AIQ EG FE M + + + P++E Y C
Sbjct: 369 RKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYAC 428
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLS 406
MVDLL RA + D+ + M EP S CN ++AE A LFELEP +
Sbjct: 429 MVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTN 488
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
+G K++SF++ D + +
Sbjct: 489 AGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQI 548
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
++ L++L E+K+ GY+ K GHSEKLALAFGLI++ G
Sbjct: 549 EQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGET 608
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+ KNLR+C DCHS TK++SK REI++ D RFH F DG CSCGDYW
Sbjct: 609 IRITKNLRLCEDCHSVTKFISKFAN----REILVRDVNRFHLFQDGVCSCGDYW 658
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 170/628 (27%), Positives = 268/628 (42%), Gaps = 180/628 (28%)
Query: 38 LELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGM 79
+ LG+QVH H++ G + F+G F++MPE+NV + +++
Sbjct: 158 VHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAG 217
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139
E+ LFY + + KD + I + R +D+
Sbjct: 218 LMRCSRIEDSRQLFYDMQE----------------KDSISWTAMIAGFTQNGLDREAIDL 261
Query: 140 FIKCGRMEMASGEFEEKDFSNL-------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192
F M + + E ++ F ++ L+ GK++H + + + D + ++ V ++L+D
Sbjct: 262 F---REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAY-IIRTDYQDNIFVGSALVD 317
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y KC+ +K A F K+ K++VSW AML GY G+ EE A++ F
Sbjct: 318 MYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEE------------AVKIFCD 365
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---- 308
M ++P+ +L V+++CA + + G + H L + V AL+++ G
Sbjct: 366 MQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGS 425
Query: 309 -------LGTGSFV----WNSLIDMYG--------------------------------- 324
S+V W +L+ Y
Sbjct: 426 IEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSA 485
Query: 325 --RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP- 381
R G +QK G + FE M KE+ + P + Y CM+DL +RAG+ ++ F+ KMPF P
Sbjct: 486 CSRAGLVQK--GNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPD 543
Query: 382 -----SSAEPC----NPDIAEHAARHLFELEP--------LSS----------------- 407
S C N +I + AA L +LEP LSS
Sbjct: 544 AIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKG 603
Query: 408 ------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC 449
+VH F A D S+ +I +L +L ++ + GY+ + +
Sbjct: 604 MRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSV 663
Query: 450 --------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
HSEKLA+AFGLI PG P+RV+KNLR+CGDCH+ TKY+SK
Sbjct: 664 LHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKIT-- 721
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
+REI++ D RFH F DG CSCGD+W
Sbjct: 722 --QREILVRDAARFHLFKDGRCSCGDFW 747
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 120/284 (42%), Gaps = 62/284 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK-----------ACSELK 109
+F MP R++ SW S++ Y G+ + V + L++ G + S+
Sbjct: 97 VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQG 156
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+G V+ +++ F+ V P++DM+ K G + A F+E
Sbjct: 157 CVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMP------------ 204
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
E ++++ N+L+ +C ++ + F +++K +SW AM+A
Sbjct: 205 -----------EKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIA------ 247
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
GFTQ G A++ F M +++ + + VL AC V + GK++H Y++
Sbjct: 248 ------GFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYII 301
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
R Q FV ++L+DMY +C +I+ E
Sbjct: 302 RTDYQ----------------DNIFVGSALVDMYCKCKSIKSAE 329
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 149 ASGEFEEKDFSN--LSLLKH---GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
S +F SN LLKH K+IH H +K L+NN L+ YAK + A
Sbjct: 5 VSKQFNSMSLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNN-LVSAYAKFDRITYA 63
Query: 204 HCKFSKIKQKHLVSWNAMLAGYA-------------------LGGFREEITGFTQYGDGE 244
F ++ Q++L SWN +L+ Y+ + + I+ + G
Sbjct: 64 RRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLL 123
Query: 245 TALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+++ ++ M+ N I+LS +L ++ LG ++HG+V++
Sbjct: 124 QSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKF------------ 171
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAI 329
G + FV + L+DMY + G +
Sbjct: 172 ----GFQSYVFVGSPLVDMYSKTGLV 193
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Cucumis sativus]
Length = 1037
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 186/703 (26%), Positives = 287/703 (40%), Gaps = 214/703 (30%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEKMPE- 67
D PD +T A + C + L G+Q+H+H I G+ + L ++ K +
Sbjct: 356 DCLKPD--CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413
Query: 68 ------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
N+ W M+ Y L + +F + EG + + C
Sbjct: 414 ETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA---------------- 149
+ L +G+ ++ ++I F+ N V ++DM+ K G++ +A
Sbjct: 474 TSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWT 533
Query: 150 ---SGE------------FEEKDFSNLSL-----------------LKHGKEIHPHHLKK 177
+G FEE ++ + L+ G++IH
Sbjct: 534 AMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAA 593
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+DL +NN+L+ YA+C ++ A+ F KI K+ +SWN++++G A G+ EE
Sbjct: 594 G-FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE---- 648
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL+ F RM++T+ + N + ++A A + K G++IH VL+
Sbjct: 649 --------ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER 700
Query: 298 GVGIALISIQGLGTGSFV----------------WNSLIDMYGR---------------- 325
V +LIS+ +GS WN++I Y +
Sbjct: 701 EVSNSLISLYA-KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759
Query: 326 CGAIQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
CG + + EG YFE M K +++ P E Y C+VDLL RAGQ D
Sbjct: 760 CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819
Query: 369 DTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
+ ++K+MP P+ A C N +I E AA HL ELEP S
Sbjct: 820 RAMEYIKEMPI-PADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIY 878
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F AGD H L ++I E + L
Sbjct: 879 AVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLN 938
Query: 435 SEIKKIGYMK-------------RIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IGY++ + P HSEKLA+AFGL+S P+RV+KNLR+C
Sbjct: 939 RRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCN 998
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ KYVSK R II+ D +RFHHF G CSC D+W
Sbjct: 999 DCHNWIKYVSKISN----RSIIVRDAHRFHHFDGGVCSCKDFW 1037
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 147/382 (38%), Gaps = 101/382 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----YKACSELKDHRVGKD 116
+F++ R+VFSW M+ ++ ++ LF ++ EG+ Y LK G
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174
Query: 117 VYDYMISIK-------FEGNACVKRPVLDMFIKCGRMEMASGEF---------------- 153
++Y+ + F+ + V ++D++ K G +E A F
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234
Query: 154 -------EEKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
EE+ + + L + G+++H +K
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG-FH 293
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S+ V N L+ Y++ R L A FS + + VS+N++ I+G Q G
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSL------------ISGLVQQG 341
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ ALE F++M + ++P+ I+++ +L+ACA V G ++H + ++
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK----------- 390
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G+ + SL+D+Y +C ++ ++ + E +L
Sbjct: 391 -----AGMSADIILEGSLLDLYSKCADVET----------AHKFFLTTETENIVLWNVML 435
Query: 362 ARAGQFD---DTLNFMKKMPFE 380
GQ D D+ ++M E
Sbjct: 436 VAYGQLDNLSDSFEIFRQMQME 457
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 186/703 (26%), Positives = 287/703 (40%), Gaps = 214/703 (30%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEKMPE- 67
D PD +T A + C + L G+Q+H+H I G+ + L ++ K +
Sbjct: 356 DCLKPD--CITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADV 413
Query: 68 ------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
N+ W M+ Y L + +F + EG + + C
Sbjct: 414 ETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTC 473
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA---------------- 149
+ L +G+ ++ ++I F+ N V ++DM+ K G++ +A
Sbjct: 474 TSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWT 533
Query: 150 ---SGE------------FEEKDFSNLSL-----------------LKHGKEIHPHHLKK 177
+G FEE ++ + L+ G++IH
Sbjct: 534 AMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAA 593
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+DL +NN+L+ YA+C ++ A+ F KI K+ +SWN++++G A G+ EE
Sbjct: 594 G-FGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEE---- 648
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL+ F RM++T+ + N + ++A A + K G++IH VL+
Sbjct: 649 --------ALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER 700
Query: 298 GVGIALISIQGLGTGSFV----------------WNSLIDMYGR---------------- 325
V +LIS+ +GS WN++I Y +
Sbjct: 701 EVSNSLISLYA-KSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759
Query: 326 CGAIQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
CG + + EG YFE M K +++ P E Y C+VDLL RAGQ D
Sbjct: 760 CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819
Query: 369 DTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
+ ++K+MP P+ A C N +I E AA HL ELEP S
Sbjct: 820 RAMEYIKEMPI-PADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIY 878
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F AGD H L ++I E + L
Sbjct: 879 AVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLN 938
Query: 435 SEIKKIGYMK-------------RIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IGY++ + P HSEKLA+AFGL+S P+RV+KNLR+C
Sbjct: 939 RRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCN 998
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ KYVSK R II+ D +RFHHF G CSC D+W
Sbjct: 999 DCHNWIKYVSKISN----RSIIVRDAHRFHHFDGGVCSCKDFW 1037
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/382 (19%), Positives = 147/382 (38%), Gaps = 101/382 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----YKACSELKDHRVGKD 116
+F++ R+VFSW M+ ++ ++ LF ++ EG+ Y LK G
Sbjct: 115 VFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDI 174
Query: 117 VYDYMISIK-------FEGNACVKRPVLDMFIKCGRMEMASGEF---------------- 153
++Y+ + F+ + V ++D++ K G +E A F
Sbjct: 175 AFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMIS 234
Query: 154 -------EEKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
EE+ + + L + G+++H +K
Sbjct: 235 GLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG-FH 293
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S+ V N L+ Y++ R L A FS + + VS+N++ I+G Q G
Sbjct: 294 SETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSL------------ISGLVQQG 341
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ ALE F++M + ++P+ I+++ +L+ACA V G ++H + ++
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIK----------- 390
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G+ + SL+D+Y +C ++ ++ + E +L
Sbjct: 391 -----AGMSADIILEGSLLDLYSKCADVET----------AHKFFLXTETENIVLWNVML 435
Query: 362 ARAGQFD---DTLNFMKKMPFE 380
GQ D D+ ++M E
Sbjct: 436 VAYGQLDNLSDSFEIFRQMQME 457
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 169/594 (28%), Positives = 244/594 (41%), Gaps = 166/594 (27%)
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
F M + + N+ SW M+ +N G Y E V +F + G V A +
Sbjct: 203 FSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGD 262
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEKDFSNLSLL 164
L+D +G ++ Y+I + CV ++DM+ KC M + + D + +
Sbjct: 263 LEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAF 322
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G + +ES L + L D + + ++VSW +M+A
Sbjct: 323 IFGLS------RNGQVESSLRLFRQLKD----------------QGMELNVVSWTSMIAC 360
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+Q G ALE F M ++PN++++ +L AC + GK
Sbjct: 361 C------------SQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAA 408
Query: 285 HGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAI 329
H + LR I VG ALI + G+ T + V WN++I Y G
Sbjct: 409 HCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKA 468
Query: 330 QK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
++ EG YF M +Y +E +E Y C
Sbjct: 469 KEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYAC 528
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS 406
MV LL+RAG+ + +++MP P + C N + E AA LFELEP +
Sbjct: 529 MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSN 588
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
G KVH +AGD SH +
Sbjct: 589 PGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQM 648
Query: 424 HKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSP 469
+I EKL +L E+KK+GY I CGHSEKLA+ FGL++T PG P
Sbjct: 649 TQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYP 708
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
L+VIKNLR+CGDCH K++S E+ REI + D RFHHF +GACSCGDYW
Sbjct: 709 LQVIKNLRICGDCHVVIKFISSFER----REIFVRDTNRFHHFKEGACSCGDYW 758
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 51/247 (20%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K + LS LK +++H +SD V +SL+ Y KC ++ AH F ++ + +
Sbjct: 122 KACAGLSALKPARQVHGI-ASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDV 180
Query: 216 VSWNAMLAGYALGGFREE-----------------------ITGFTQYGDGETALEFFSR 252
VSW+A++A YA G +E I GF G A+ F
Sbjct: 181 VSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLD 240
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M +P+ ++S VL A ++ +G IHGYV++ QGL +
Sbjct: 241 MHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIK----------------QGLVSD 284
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL--LARAGQFDDT 370
V ++LIDMYG+C + M + ++ M+ C + L+R GQ + +
Sbjct: 285 KCVSSALIDMYGKCSCTSE---------MSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335
Query: 371 LNFMKKM 377
L +++
Sbjct: 336 LRLFRQL 342
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 36/219 (16%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S + L ++ H H LK L +D + L+ YA A + + ++ S+
Sbjct: 24 STTASLSQTRQAHAHILKTG-LFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
+ + I F+++ AL FS+M+ + P+ L + ACA +
Sbjct: 83 STL------------IYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSAL 130
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
K +++HG + S+ G + SFV +SL+ MY +C I+ + R F
Sbjct: 131 KPARQVHG----------------IASVSGFDSDSFVQSSLVHMYIKCNQIR--DAHRVF 172
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ M EP + + +V AR G D+ +M
Sbjct: 173 DRM-----FEPDVVSWSALVAAYARQGCVDEAKRLFSEM 206
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 168/692 (24%), Positives = 289/692 (41%), Gaps = 209/692 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY + + C L +L G +VH +I G++L ++G +F +M
Sbjct: 128 TYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREM 187
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRVGK 115
P R++ SW SM+ Y +G ++ F + +D G+ ACS R GK
Sbjct: 188 PVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGK 247
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------------- 155
+++ M+ + E + V+ ++DM+ KCGRM+ A F++
Sbjct: 248 EIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNA 307
Query: 156 ---KDFSNLSLLKHGKEIHPHHLK-------------------------KDDLESDLLVN 187
+ F+ + ++ G ++HP + ++ L++
Sbjct: 308 QSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLE 367
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D Y +C LK A C F ++ +++L+SWNAM+A Y T+ G+ A+
Sbjct: 368 TALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASY------------TKNGENRKAM 415
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F + ++P+ +++ +L A A++ + ++IHGYV + + +T V +++ +
Sbjct: 416 TLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMY 475
Query: 308 GLGTGSFV----------------WNSLIDMYGRCG------------------------ 327
G G+ + WN++I Y G
Sbjct: 476 G-KCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTF 534
Query: 328 ---------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
A NEGW YF MK++YN+ P +E Y C++DL+ R G D NF+++MP
Sbjct: 535 VSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMP 594
Query: 379 FEPS----------SAEPCNPDIAEHAARHLFELEPLSSG-------------------- 408
P+ S + ++AE AA H+ LE ++G
Sbjct: 595 LAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVER 654
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K F+ D S + ++ + + L + +I + Y+
Sbjct: 655 IKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHS 714
Query: 446 I--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ A HS +LA+ FGLIST+ G+P+ V KN+R+C CH K +S+
Sbjct: 715 LTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISE 774
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REII+ D+ FHHF G CSCGDYW
Sbjct: 775 TTK----REIIVRDSKIFHHFNGGHCSCGDYW 802
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 86/369 (23%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-------LCAFLGMFEKMPER 68
TNPD + IF+ N ++ ++ + + + L +FE M +
Sbjct: 30 TNPDTDLILKPRIFKTARSKRNQSFLVERNSVSLTRALSSYVERGYMKNALDLFENMRQC 89
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG 128
+ F W M+ + G + + V+ ++ + GV D + Y IK
Sbjct: 90 DTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRG------------DNFTYPFVIK--- 134
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
AC G ++A GE HGK I K L+ D+ + N
Sbjct: 135 -AC-----------GGLYDLAEGE-----------RVHGKVI------KSGLDLDIYIGN 165
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+ YAK ++ A F ++ + LVSWN+M++GY GDG +L
Sbjct: 166 SLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGY------------VSVGDGWRSLS 213
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M + ++ + S+ G+L AC+ + GKEIH ++R ++L
Sbjct: 214 CFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDV----------- 262
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
V SL+DMY +CG + E R F+ + + ++ + M+ + Q
Sbjct: 263 -----MVQTSLVDMYAKCGRMDYAE--RLFDQIT-----DKSIVAWNAMIGGYSLNAQSF 310
Query: 369 DTLNFMKKM 377
++ +++KM
Sbjct: 311 ESFAYVRKM 319
>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
Length = 624
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 251/584 (42%), Gaps = 183/584 (31%)
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM----------------- 146
AC++ K+ + ++ ++ S +FEG+A + ++ ++ KCG +
Sbjct: 60 ACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVS 119
Query: 147 ----------------------EMASGEFEEKDFSNLSLLKH---------GKEIHPHHL 175
M G F+ F+ SLLK G +IH +
Sbjct: 120 WTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAV 179
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K D D+ V ++L+D YA+C + +A F K+ K+ VSWNA+ I+
Sbjct: 180 KCD-WHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL------------IS 226
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
GF + GDGETAL F+ M + + + S + + A + + GK +H ++++ +L
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286
Query: 296 STGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK-------- 331
+ VG ++ + +GS + WNS++ + + G ++
Sbjct: 287 TAFVGNTMLDMYA-KSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEM 345
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
EG YF+M+K EYN+EP +E Y +VDLL RAG
Sbjct: 346 RKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAGL 404
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------- 408
+ L F+ KMP EP++A C N + + AA H+F+L+P SG
Sbjct: 405 LNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNI 464
Query: 409 -----------------------------------KVHSFIAGDTSHSLVHKISEKLMRL 433
VH F+A D +H +I + +
Sbjct: 465 YASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEI 524
Query: 434 YSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+I+K GY+ + HSEK+ALAF LI G+ +R++KN+R+C
Sbjct: 525 SMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRIC 584
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCHS KY+SK EREI++ D RFHHF +G+CSCGDYW
Sbjct: 585 GDCHSAFKYISKV----FEREIVVRDTNRFHHFSNGSCSCGDYW 624
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 28/170 (16%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
++ M + TY+ IF + LE G VHAH++ +L AF+G
Sbjct: 239 MVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMY 298
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY------- 102
+FE++ +++ +W SM+ + G +E V+ F + G+Y
Sbjct: 299 AKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFL 358
Query: 103 ---KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + GK +D + E V+D+ + G + A
Sbjct: 359 CILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 184/695 (26%), Positives = 284/695 (40%), Gaps = 214/695 (30%)
Query: 24 TYALI--FQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
TY L+ Q C + +LG+++HA ++ L ++ +F+
Sbjct: 112 TYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFD 171
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRV 113
++ E++ +W SM+ + G Y E + F L D + A L
Sbjct: 172 ELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLN 231
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF------------ 158
GK+++ Y + + N + ++DM+ KC + A F++ KD
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQ 291
Query: 159 ---------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
S L L H KE+H + LK+ SDL+
Sbjct: 292 NNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG--LSDLM 349
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N ++D YA C + A F IK K +VSW +M++ Y G E
Sbjct: 350 MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANE------------ 397
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F M +T ++P++I+L +L+A A + GKEIHG++ R L +L+
Sbjct: 398 ALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVD 457
Query: 306 IQGLGTGSF----------------VWNSLIDMYGRCGAIQK------------------ 331
+ GS +W ++I+ YG G +
Sbjct: 458 MYAC-CGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHI 516
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
NEG R E MK +Y +EP E Y C+VDLL RA ++ +F+K
Sbjct: 517 TFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKS 576
Query: 377 MPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG------------------ 408
M EP++ C N + E AA+ L +L+P S G
Sbjct: 577 MQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDV 636
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG-Y 442
KVH+F+ D SH +KI +KL ++ +++K G Y
Sbjct: 637 EEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGY 696
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + GHSE+LA+A+GL+STS G+P+R+ KNLR+C DCH+ K
Sbjct: 697 VPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKL 756
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VSK ERE+I+ D RFHHF DG CSCGD+W
Sbjct: 757 VSKF----FERELIVRDASRFHHFEDGVCSCGDFW 787
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 138/324 (42%), Gaps = 91/324 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
+ T+ + + C + ++ G ++H +I CG + F+ +F+
Sbjct: 10 SFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFD 69
Query: 64 KMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
+M ERN V SW S++ Y++ G E + LF E++ VG + Y +
Sbjct: 70 RMNERNDVVSWNSIISAYSLNGQCMEALGLF------------REMQKAGVGANTYTLVA 117
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+++ AC E+ F L G EIH LK + +
Sbjct: 118 ALQ----AC----------------------EDSSFKKL-----GMEIHAAILKSNQV-L 145
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V N+L+ + + + A F ++ +K ++WN+M+AG FTQ G
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAG------------FTQNGL 193
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+FF + +++P+ +SL +LAA ++ GKEIH Y +++ + + +G
Sbjct: 194 YNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIG-- 251
Query: 303 LISIQGLGTGSFVWNSLIDMYGRC 326
N+LIDMY +C
Sbjct: 252 --------------NTLIDMYSKC 261
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 191/716 (26%), Positives = 288/716 (40%), Gaps = 233/716 (32%)
Query: 1 WVIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG 60
+V + LL SMDL D C +A +++ + + +G + VCG + A
Sbjct: 105 FVFTTLLKLLVSMDLA--DTCLSVHAYVYKLGHQADAF-VGTALIDAYSVCG-NVDAARQ 160
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ + +++ SWT M+ Y +E+ + LF + G K+C+ L+
Sbjct: 161 VFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEA 220
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
+VGK V+ + + ++ + V +L+++ K G + A FEE
Sbjct: 221 FKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISR 280
Query: 156 -------------------------KDFS---------NLSLLKHGKEIHPHHLKKDDLE 181
+F+ +L LL G +IH LK L+
Sbjct: 281 YAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV-GLD 339
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S++ V+N+LMD YAKC ++ + F+ +K+ V+WN ++ GY Q G
Sbjct: 340 SNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGY------------VQLG 387
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
DGE AL FS M+ D+QP ++ S VL A A + + G++IH ++
Sbjct: 388 DGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIK----------- 436
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAI------------QKNEGW-------------- 335
S V NSLIDMY +CG I Q W
Sbjct: 437 -----TMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGM 491
Query: 336 ---RYFEMMK-----------------------------------KEYNMEPAMEQYCCM 357
F+MM+ ++Y +EP +E Y CM
Sbjct: 492 EALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCM 551
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL-- 405
V LL R+GQFD+ + + ++PF+PS C N D+ + A+ + E+EP
Sbjct: 552 VWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDD 611
Query: 406 -----------------------------------------SSGKVHSFIAGDTSHSLVH 424
+ G VH F GDTSH +
Sbjct: 612 ATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIK 671
Query: 425 KISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPG 467
I L LY + + GY +P C HSE+LALAFGLI G
Sbjct: 672 LIFAMLEWLYKKTRDAGY---VPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSG 728
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+IKNLR+C DCH+ K VSK +REI++ D RFHHF G CSCGDYW
Sbjct: 729 CSIRIIKNLRICVDCHAVIKLVSKI----VQREIVIRDINRFHHFRQGVCSCGDYW 780
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 163/625 (26%), Positives = 262/625 (41%), Gaps = 168/625 (26%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
++F R + + H+ V ++L + FE+M ER++ +W SM+ YN GY
Sbjct: 202 VVFDRMVVKDISSWNAMIALHMQVGQMDLA--MAQFEQMAERDIVTWNSMISGYNQRGYD 259
Query: 87 EEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
+++F ++ + V AC+ L+ +G+ ++ ++++ F+ + V
Sbjct: 260 LRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNA 319
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
++ M+ +CG +E A E++ +L + +L+D Y
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGF---------------------TALLDGYI 358
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
K + A F +K + +V+W AM+ GY G YG+ A+ F M+
Sbjct: 359 KLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGL---------YGE---AINLFRSMVG 406
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ +PN+ +L+ +L+ + + GK+IHG ++ S V ALI++ GS
Sbjct: 407 EEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYA-KAGSIT 465
Query: 316 -----------------WNSLIDMYGRCGAIQK--------------------------- 331
W S+I + G ++
Sbjct: 466 SASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSAC 525
Query: 332 ------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP---- 381
N+G +YF+MMK + P + Y CMVDL RAG + F++KMP EP
Sbjct: 526 THAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVT 585
Query: 382 --SSAEPC----NPDIAEHAARHLFELEPLSSG--------------------------- 408
S C N D+ + AA L LEP +SG
Sbjct: 586 WGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKD 645
Query: 409 ----------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--- 449
KVH+F D H ++I + +++ EIKK+GY+ +
Sbjct: 646 GRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHD 705
Query: 450 -----------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERE 498
HSEKLA+AFGLIST + LR++KNLR+C DCH+ K++SK
Sbjct: 706 LEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVG---- 761
Query: 499 REIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSC DYW
Sbjct: 762 REIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 153/336 (45%), Gaps = 76/336 (22%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
C F F+++P+R+ SWT+M+ Y +G Y + + + ++ EG V +
Sbjct: 100 CEF---FDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASV 156
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDFSNLS 162
+ + GK V+ +++ + GN V +L+M+ KCG MA F+ KD S+
Sbjct: 157 AATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW- 215
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
N+++ + + + +A +F ++ ++ +V+WN+M+
Sbjct: 216 -------------------------NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMI 250
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLG 281
+GY Q G AL+ FS+M++ M P+ +L+ VL+ACA ++ +G
Sbjct: 251 SGY------------NQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIG 298
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
++IH ++ ++TG I+ I V N+LI MY RCG ++ ++
Sbjct: 299 EQIHSHI------VTTGFDISGI----------VLNALISMYSRCGGVETAR-----RLI 337
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
++ + +E + ++D + G ++ N +
Sbjct: 338 EQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSL 373
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H +K + S L+NN LM+ Y+K Y A F ++ + SWN +L+ YA G
Sbjct: 36 VHCRVIKSGLVFSVYLMNN-LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRG 94
Query: 230 -------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ I G+ G A+ M++ ++P+ +L+ VLA
Sbjct: 95 DMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLA 154
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ A + + GK++H ++++ GL V NSL++MY +CG
Sbjct: 155 SVAATRCLETGKKVHSFIVK----------------LGLRGNVSVSNSLLNMYAKCG 195
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 173/637 (27%), Positives = 262/637 (41%), Gaps = 211/637 (33%)
Query: 28 IFQRCPKLNNLELGIQVHA----------HLIVCG-VELCAFLGM----------FEKMP 66
+ C +L ++ LG Q+H+ + CG V++ A L M F+ MP
Sbjct: 252 MISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMP 311
Query: 67 ERNVFSWTSMMGMYNVLGYYEE-IVNLFYLLIDEGV----------YKACSELKDHRVGK 115
NV SWT+++ Y G E ++ LF +++E + KAC+ L D G+
Sbjct: 312 RHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGR 371
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE--------------EKDFSNL 161
++ +++ V ++ M+ + G ME A F+ E + +N
Sbjct: 372 QIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNA 431
Query: 162 S----------------------------LLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
S LL G+++H +K SD ++NSL+
Sbjct: 432 SCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAG-FRSDQGISNSLVSM 490
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
YA+C YL+ A F ++K +++SW ++ I+G ++G + AL F M
Sbjct: 491 YARCGYLEDACRAFDEMKDHNVISWTSI------------ISGLAKHGYAKQALSMFHDM 538
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
I ++PN ++ VL+AC+ V K
Sbjct: 539 ILAGVKPNDVTYIAVLSACSHVGLVK---------------------------------- 564
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG +F M+K++ + P ME Y C+VDLLAR+G ++ F
Sbjct: 565 -------------------EGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQF 605
Query: 374 MKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS-------- 407
+ +MP + + C N +I E AA H+ LEP LS+
Sbjct: 606 INEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLW 665
Query: 408 ---------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+H F AGDTSH L I KL+ L EIK I
Sbjct: 666 DEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDI 725
Query: 441 GY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY +K HSEK+A+AFGLI+TS P+R+ KNLR+C DCHS
Sbjct: 726 GYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAI 785
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+SK+ REII+ D+ RFH DG CSCG+YW
Sbjct: 786 KYISKSTG----REIILRDSNRFHRMKDGICSCGEYW 818
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 108/256 (42%), Gaps = 58/256 (22%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A +F+ + ER WT ++ Y G ++V LF ++D+G
Sbjct: 195 DLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDG------------- 241
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
FE + + M C + L ++ G+++H
Sbjct: 242 ------------FEPDG---YSMSSMISAC---------------TELGSVRLGQQLHSV 271
Query: 174 HLKKDDLESDLLVNNSLMDFYAKC---RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
L+ L SD V+ L+D YAK R ++ A F + + +++SW A+++GY G
Sbjct: 272 ALRLG-LVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGV 330
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+E + F M+ ++PN I+ S +L ACA + G++IH +VL+
Sbjct: 331 QEN-----------NVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLK 379
Query: 291 HHIQLSTGVGIALISI 306
I VG AL+S+
Sbjct: 380 TSIAHVNVVGNALVSM 395
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAML 222
L+ G+ +H L+ + L++D +V NSL+ Y+KC ++ A F ++ + LVSW AM
Sbjct: 56 LRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMA 115
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL-G 281
+ A G E +L M++ ++PN +L AC + F+L G
Sbjct: 116 SCLARNGAERE------------SLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAG 163
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ G+VL+ TG GT V +LIDM+ R G
Sbjct: 164 GVVLGFVLK------TGF---------WGTDVSVGCALIDMFARNG 194
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V +L+D +A+ L A F + ++ V W + IT + Q G
Sbjct: 178 TDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLL------------ITRYVQAG 225
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+E F M+ +P+ S+S +++AC ++ +LG+++H LR
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALR----------- 274
Query: 302 ALISIQGLGTGSFVWNSLIDMYGR 325
GL + S V L+DMY +
Sbjct: 275 -----LGLVSDSCVSCGLVDMYAK 293
>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
Length = 624
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 181/643 (28%), Positives = 271/643 (42%), Gaps = 181/643 (28%)
Query: 9 LLQSMDLTNPDECTVT---YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKM 65
+L+ +DL + E T Y C + NLE ++HAHL AFL
Sbjct: 35 VLRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLD----- 89
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
S++ MY + N+F D KD+ + I
Sbjct: 90 --------NSLIHMYCKCRSVLDARNVF----------------DQMRRKDMVSWTSLI- 124
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLK 176
G A PV + + G M G F+ F+ SLLK G++IH +K
Sbjct: 125 -AGYAQNDMPVEAIGLLPG---MLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVK 180
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
D+ V ++L+D YA+C + +A F K+ K+ VSWNA+ I+G
Sbjct: 181 CG-WHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNAL------------ISG 227
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
F + GDGE+AL F+ M++ + + S V ++ A++ + GK +H +V++ +L+
Sbjct: 228 FARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLT 287
Query: 297 TGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK--------- 331
VG L+ + +GS + WNS++ + + G ++
Sbjct: 288 AFVGNTLLDMYA-KSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG RYFEMMK EY++EP ++ Y +V LL RAG
Sbjct: 347 KSGVYLNQITFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHYVTVVALLGRAGLL 405
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
+ L F+ KMP EP++A C N + + AA H+FEL+P SG
Sbjct: 406 NYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIY 465
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
VH F+A D +H +I + +
Sbjct: 466 ASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEIS 525
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+I+K GY+ K HSEKLALAF LI G+ +R++KN+R+CG
Sbjct: 526 KKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICG 585
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS KY+SK REI++ D RFHHF G+CSCGDYW
Sbjct: 586 DCHSAFKYISKVFG----REIVVRDTNRFHHFSSGSCSCGDYW 624
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 178/629 (28%), Positives = 265/629 (42%), Gaps = 174/629 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP----ERNVFSWTSMMGMYNVL 83
+F R P+ N + + + E A G+ E+M E NV +W ++ N
Sbjct: 74 VFDRMPEKNVVGWSALIAGYSARGDAE--AAWGLLEQMRSAGVEPNVITWNGLVSGLNRS 131
Query: 84 GYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVK 133
G + V + EG + A ++K+ VGK V+ Y++ +ACV
Sbjct: 132 GRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVV 191
Query: 134 RPVLDMFIKCGRMEMASGEFEEK---DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
++DM+ KCGR + F E D ++ + L G L + V+ +L
Sbjct: 192 TALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAG------------LSRNAQVSEAL 239
Query: 191 MDFYA-KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
+ F CR +++ ++VSW +++A Q G A++
Sbjct: 240 LLFREFICRGVEL-----------NVVSWTSIVAC------------CVQNGRDLEAVDL 276
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--- 306
F M ++PN++++ VL A A V G+ H + LR VG AL+ +
Sbjct: 277 FRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAK 336
Query: 307 -----------QGLGTGSFV-WNSLIDMYGRCG----AIQ-------------------- 330
+ + + V WN++I Y G A+Q
Sbjct: 337 CGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCV 396
Query: 331 ---------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
EG RYF M++ + + P ME Y CMV LL R+G+ D+ + + +MPFEP
Sbjct: 397 LGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEP 456
Query: 382 SSA------EPC----NPDIAEHAARHLFELEPLSSG----------------------- 408
S C N +AE AA LF+LEP ++G
Sbjct: 457 DSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRD 516
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
KVH +AGD SH ++ I+EKL +L E+ ++G+
Sbjct: 517 EMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDF 576
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSEKLA+A GLIST PG+PLRVIKNLR+CGDCH K++S E
Sbjct: 577 VLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFE- 635
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
+REI + D RFHHF DG CSCGDYW
Sbjct: 636 ---QREISVRDTNRFHHFKDGKCSCGDYW 661
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 39/171 (22%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------ 233
L D V +SL+ Y + A F ++ +K++V W+A++AGY+ G E
Sbjct: 48 LAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLE 107
Query: 234 -----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
++G + G A+ RM P+ +S L+A VK
Sbjct: 108 QMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVK 167
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+GK++HGYV++ +L + V +LIDMYG+CG
Sbjct: 168 EVSVGKQVHGYVVKAGCRLD----------------ACVVTALIDMYGKCG 202
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 170/634 (26%), Positives = 271/634 (42%), Gaps = 195/634 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------LCAFLG---------MFEKM 65
T+ L+ + C + +N +LGI +H+ ++ CG L + G +FE++
Sbjct: 113 TFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEI 172
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PER+V +WT++ Y G + E ++LF +++ GV D Y +++ +
Sbjct: 173 PERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRP------------DSY-FIVQVL 219
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ACV LD SGE+ ++KH +E+ +++ +
Sbjct: 220 ---SACVHVGDLD-----------SGEW---------IVKHMEEM--------EMQKNSF 248
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L++ YAKC ++ A F + +K +V+W+ M+ GYA F +E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKE------------ 296
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
+EFF +M+Q +++P+ S+ G L++CA + LG+ + RH + + ALI
Sbjct: 297 GIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 305 ----------------------------SIQGLGTGSFVWNSLIDMYGR----------- 325
+I GL V S ++G+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFA-VFGQTEKLGISPDGS 415
Query: 326 ------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
CG + +G R+F + Y ++ +E Y CMVDL RAG DD +
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------------- 409
MP P++ C + +AE + L LEP ++G
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEA 535
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
VH F+A D SH L KI KL L +E++ +G++
Sbjct: 536 AEVRDMMNRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSEKLA+AFGLIST G +RV+KNLR+CGDCH K +
Sbjct: 596 PTTEFVFFDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK + REI++ DN RFH F +G+CSC DYW
Sbjct: 656 SKITR----REIVVRDNNRFHCFTNGSCSCNDYW 685
>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 839
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 178/652 (27%), Positives = 263/652 (40%), Gaps = 218/652 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEK-------- 64
PD T+T + C ++ L LG ++H+ +I G+ L C+ + M+ K
Sbjct: 260 PDRFTLTG--LISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEAR 317
Query: 65 -----MPERNVFSWTSMMGMY--NVLGYYEEIVNLFYLLIDEG-----------VYKACS 106
M E NV SWT+++ Y GY E + +F ++ +G V KAC+
Sbjct: 318 KVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE------------ 154
L D G+ V+ I + CV ++ ++ K GRME A F+
Sbjct: 378 SLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETV 437
Query: 155 -------------EKD--------------FSNLSLLK---------HGKEIHPHHLKKD 178
E+D F+ SLL G++IH + K
Sbjct: 438 VDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAM-VVKI 496
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+DL VNN+L+ Y+KC + A F+ ++ ++++W ++ I GF
Sbjct: 497 GFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSI------------INGFA 544
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
++G ALE F M++T ++PN ++ VL+AC+ V
Sbjct: 545 KHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHV----------------------- 581
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
LID E W++F M+ + + P ME Y CMV
Sbjct: 582 -------------------GLID-----------EAWKHFTSMRDNHGIVPRMEHYACMV 611
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP---- 404
DLL R+G + + F+ MPF+ + C N + EHAA+ + E EP
Sbjct: 612 DLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPA 671
Query: 405 ----LSS-----------------------------------GKVHSFIAGDTSHSLVHK 425
LS+ +VH F GDT H +
Sbjct: 672 TYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQ 731
Query: 426 ISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLR 471
I EKL L +IK +GY+ HSEKLA+AF LIST P+R
Sbjct: 732 IYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIR 791
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V KNLR+CGDCH+ KY+S REI++ D RFHH DG CSC DYW
Sbjct: 792 VFKNLRVCGDCHTAIKYISMVSG----REIVVRDANRFHHMKDGTCSCNDYW 839
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 54/247 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KM E+NV +WT M+ GY +E ++LF ++ Y
Sbjct: 217 VFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGY------------------ 258
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
V D F G + + + + L GKE+H ++ L
Sbjct: 259 ---------------VPDRFTLTGLISVCA---------EIQFLSLGKELHSWVIRSG-L 293
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
DL V SL+D YAKC ++ A F +++ +++SW A++ GY GG E
Sbjct: 294 VLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYE------- 346
Query: 241 GDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
A+ FS M +Q + PN + SGVL ACA + F G+++HG ++ + V
Sbjct: 347 ---REAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCV 403
Query: 300 GIALISI 306
G L+S+
Sbjct: 404 GNGLVSV 410
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 35/177 (19%)
Query: 175 LKKDDLESDLLVNNSLMDFYAK-CRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
LK +S + V L+D + K C L+ A F K+++K++V+W M
Sbjct: 183 LKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLM---------- 232
Query: 232 EEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
IT QYG + A++ F M + + P+ +L+G+++ CA+++ LGKE+H +V+R
Sbjct: 233 --ITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIR 290
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+ L VG SL+DMY +CG +Q E + F+ M +E+N+
Sbjct: 291 SGLVLDLCVGC----------------SLVDMYAKCGLVQ--EARKVFDGM-REHNV 328
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 47/220 (21%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAG 224
GK +H H L +L D L+ NSL+ Y+K A F ++ ++ +VS++++
Sbjct: 71 GKLLH-HKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSI--- 126
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKE 283
I+ F + A+E F +++ D + PN + V+ AC + FK G
Sbjct: 127 ---------ISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLC 177
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF-----VWNSLIDMYGR-CGAIQKNEGWRY 337
+ G+VL+ TG F V LIDM+ + C +
Sbjct: 178 LFGFVLK--------------------TGYFDSHVCVGCELIDMFVKGCSLADLESARKV 217
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
F+ M+ E + + M+ LA+ G D+ ++ +M
Sbjct: 218 FDKMR-----EKNVVTWTLMITRLAQYGYNDEAIDLFLEM 252
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 162/585 (27%), Positives = 249/585 (42%), Gaps = 164/585 (28%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH------RV 113
G+F++MPER+ SW +M+ Y G E LF V+ + + +
Sbjct: 225 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 284
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
+ V+D M E N+ ++ +++C RM+ A FE N+S
Sbjct: 285 ARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW--------- 331
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
N+++ YA+ + A F ++ Q+ +SW A++AGYA G+
Sbjct: 332 --------------NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGY--- 374
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
GE AL F M + + N + + L+ CA++ +LGK++HG V++ +
Sbjct: 375 ---------GEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL 425
Query: 294 QLSTGVGIAL--------------ISIQGLGTGSFV-WNSLIDMYGRCG----------A 328
+ VG AL I +G+ V WN++I Y R G +
Sbjct: 426 ESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 485
Query: 329 IQK-----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
++K ++G YF M ++Y + + Y CM+DLL RAG
Sbjct: 486 MKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAG 545
Query: 366 QFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG------- 408
+ DD N MK MPFEP +A N ++ E AA+ +FE+EP +SG
Sbjct: 546 RLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSN 605
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
K+H+F GD+ H +I L
Sbjct: 606 LYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEE 665
Query: 433 LYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L ++KK GY+ HSEKLA+AFG+++ G P+RVIKNLR+
Sbjct: 666 LDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRV 725
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K++SK R II+ D++RFHHF G CSCGDYW
Sbjct: 726 CEDCHNAMKHISKIVG----RLIILRDSHRFHHFNGGQCSCGDYW 766
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 81/246 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPER+V SW +M+ Y GY +E K+++D
Sbjct: 133 LFDQMPERDVVSWNAMLSGYAQNGYVKE-------------------------AKEIFDE 167
Query: 121 MI---SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
M SI + G +L +++ GR+E A FE K
Sbjct: 168 MPCKNSISWNG-------MLAAYVQNGRIEDARRLFESK--------------------- 199
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------- 229
+ +L+ N +M Y K L A F ++ ++ VSWN M++GYA G
Sbjct: 200 --ADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 257
Query: 230 FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
F E ++G+ Q G + A F M + N++S + ++A Q K
Sbjct: 258 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP----EKNSVSWNAIIAGYVQCKRM 313
Query: 279 KLGKEI 284
+E+
Sbjct: 314 DQAREL 319
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 99/249 (39%), Gaps = 61/249 (24%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL+ N ++ + R L+ A F ++ ++ +VSWNAML+GYA G+ +E
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE--------- 160
Query: 243 GETALEFFSRMIQTDMQP--NTISLSGVLAACAQVKGFKLGKEIH--------------- 285
A E F M P N+IS +G+LAA Q + + +
Sbjct: 161 ---AKEIFDEM------PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMM 211
Query: 286 -GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
GYV R+ + + G+ + + WN++I Y + G + E R FE
Sbjct: 212 GGYVKRNRLVDARGIFDRMPERDEVS-----WNTMISGYAQNGELL--EAQRLFE----- 259
Query: 345 YNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHA------- 395
P + + MV + G D+ MP + S + N IA +
Sbjct: 260 --ESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS--WNAIIAGYVQCKRMDQ 315
Query: 396 ARHLFELEP 404
AR LFE P
Sbjct: 316 ARELFEAMP 324
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ C ++ LELG QVH ++ G+E ++G +FE +
Sbjct: 396 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 455
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRVGK 115
E+ V SW +M+ Y G+ +E + LF +L D+ GV ACS G
Sbjct: 456 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT 515
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----EKDFSNLSLLKH 166
+ + DY I+ + C ++D+ + GR++ A + E D + L
Sbjct: 516 EYFYSMTQDYGITANSKHYTC----MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 571
Query: 167 GKEIH 171
IH
Sbjct: 572 ASRIH 576
>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
Length = 832
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 172/635 (27%), Positives = 259/635 (40%), Gaps = 193/635 (30%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVEL------C 56
+S D PD+ T T L C N G Q+HAHLI + EL C
Sbjct: 269 ESEDGIQPDQFTFTTLLTL--CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSEC 326
Query: 57 AFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------Y 102
L +F +M ERN +SW SM+ Y G +E + LF + G+
Sbjct: 327 GRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSML 386
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--KDFSN 160
+C L D + G++++++++ E ++ ++DM+ KCG M+ A +++ K N
Sbjct: 387 SSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRN 446
Query: 161 LSLLKH----------GKEIHPHHLK--KDDLESD----------LLVNNSLMDFYAKCR 198
+L KE H L+ + D+E D L++ +L+D Y+KC
Sbjct: 447 TALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCG 506
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
+ A F + K++VSWNAM++GY +++G + AL + M + M
Sbjct: 507 AITKARTVFDNMNGKNIVSWNAMISGY------------SKHGCSKEALILYEEMPKKGM 554
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
PN ++ +L+AC+ + G I
Sbjct: 555 YPNEVTFLAILSACSHTGLVEEGLRI---------------------------------- 580
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
F M+++YN+E E Y CMVDLL RAG+ +D F++KMP
Sbjct: 581 -------------------FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMP 621
Query: 379 FEPSSAE------PC----NPDIAEHAARHLFELEPLSSG-------------------- 408
EP + C + D+ AA+ LFEL+P + G
Sbjct: 622 IEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVED 681
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
++ F AG +H +I L L + K +GY+
Sbjct: 682 IRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPD 741
Query: 446 IP-----------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
HSE+LAL+ GLIS S +RV KNLR+CGDCH+ TK+
Sbjct: 742 TSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKF 801
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK R II D RFHHF +G CSCGDYW
Sbjct: 802 ISKITG----RRIIARDTNRFHHFENGKCSCGDYW 832
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/410 (22%), Positives = 172/410 (41%), Gaps = 113/410 (27%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV---------------------ELCA 57
D + Y+ + Q C N+ + G +H +I G +LC
Sbjct: 68 DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+FE+MPERN+ +W +M+ Y + Y E +F ++ GV + C
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------------------- 144
L+ GK V+ +I+ F+G+ V ++DM+ KC
Sbjct: 188 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 247
Query: 145 ------------------RMEMASGEFEEKDFSNLSLL---------KHGKEIHPHHLKK 177
RM+ + + F+ +LL G++IH HL +
Sbjct: 248 ISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHA-HLIR 306
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
++ +++V L+ Y++C L A F+++ +++ SWN+M+ GY
Sbjct: 307 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ----------- 355
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G+ + AL F +M ++P+ SLS +L++C + + G+E+H +++R+ ++
Sbjct: 356 -QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEE- 413
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR-YFEMMKKEYN 346
GI + L+DMY +CG++ + W+ Y + +KK+ N
Sbjct: 414 --GILQV-------------VLVDMYAKCGSM--DYAWKVYDQTIKKDRN 446
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 113/287 (39%), Gaps = 42/287 (14%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK---VAHCKFSKIKQKHLVSWNA 220
+ GK IH + + D + ++ YA+ L A F ++ +++L +WN
Sbjct: 87 FQRGKSIHTQMIS-NGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNT 145
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ YA + D A F RM++ + P+ + + L C ++
Sbjct: 146 MILAYA------------RVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 193
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340
GK++H LI+ G +FV N+LIDMY +C + + F+
Sbjct: 194 GKQVHS---------------KLIAC-GFKGDTFVGNALIDMYAKCD--DEESCLKVFDE 235
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLF 400
M + + + ++ A+ G F+D L +M +P
Sbjct: 236 MGERNQV-----TWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290
Query: 401 ELEPLSSGKVHS-FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+ ++H+ I + + +++ + +L+ +YSE ++ Y K I
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNII--VETELVHMYSECGRLNYAKEI 335
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 171/641 (26%), Positives = 271/641 (42%), Gaps = 195/641 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLGM------------ 61
T P+ T++ AL + C + ELG Q+H+ LI +L A +G+
Sbjct: 280 TRPNMFTLSSAL--KACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDD 337
Query: 62 ----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
++ MP++++ +W +++ Y+ G + + V+LF + E +
Sbjct: 338 ARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDI---------------- 381
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ N VL K ++L +K K+IH +K
Sbjct: 382 ---------DFNQTTLSTVL------------------KSVASLQAIKVCKQIHTISIKS 414
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ SD V NSL+D Y KC ++ A F + + LV++ +M IT +
Sbjct: 415 G-IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSM------------ITAY 461
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
+QYGDGE AL+ + +M D++P+ S +L ACA + ++ GK++H + ++
Sbjct: 462 SQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDI 521
Query: 298 GVGIALISIQGL---------------GTGSFVWNSLIDMYGRCG--------------- 327
+L+++ G W+++I Y + G
Sbjct: 522 FASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRD 581
Query: 328 ------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
A NEG +YFE M+ + ++P E Y CM+DLL R+G+ ++
Sbjct: 582 GVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNE 641
Query: 370 TLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLSSG----------- 408
+ + +PFE ++ N ++ + AA+ LF+LEP SG
Sbjct: 642 AVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYAS 701
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
KV++FI GD SHS +I KL +L
Sbjct: 702 AGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDL 761
Query: 437 IKKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+ K GY + HSEKLA+AFGLI+T PG P+RV KNLR+C DC
Sbjct: 762 LSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDC 821
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K+V K REII+ D RFHHF DG+CSCGDYW
Sbjct: 822 HTFFKFVCKI----VSREIIVRDINRFHHFKDGSCSCGDYW 858
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 96/439 (21%), Positives = 175/439 (39%), Gaps = 112/439 (25%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C +L +G +VH +V G E F+ +F +
Sbjct: 84 TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGI 143
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
ERNV SW ++ Y E V LF ++ G+ AC+ L++ +G+
Sbjct: 144 VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGR 203
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------------KD 157
++ M+ + + + ++DM+ K G +E A F++ D
Sbjct: 204 KIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHD 263
Query: 158 FSNLSLL------------------------------KHGKEIHPHHLKKDDLESDLLVN 187
++L+L+ + G+++H L K D SDL
Sbjct: 264 CNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSS-LIKMDAHSDLFAA 322
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
L+D Y+KC + A + + +K +++WNA+++GY +Q GD A+
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGY------------SQCGDHLDAV 370
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
FS+M D+ N +LS VL + A ++ K+ K+IH ++
Sbjct: 371 SLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIK----------------S 414
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
G+ + +V NSL+D YG+C I +E + FE E + Y M+ ++ G
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHI--DEASKIFEERTWE-----DLVAYTSMITAYSQYGDG 467
Query: 368 DDTLNFMKKMPFEPSSAEP 386
++ L +M +P
Sbjct: 468 EEALKLYLQMQDADIKPDP 486
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/377 (25%), Positives = 148/377 (39%), Gaps = 102/377 (27%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKM----PERNVFSWTSMMGMYNVLG 84
F R P L N HL+ C G K+ E +V SW+S++ Y G
Sbjct: 12 FSRDPSLRN---------HLVTL-YSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61
Query: 85 YYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ EE + +F + GV KACS +D +G+ V+ + FE + V
Sbjct: 62 FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121
Query: 135 PVLDMFIKCGRME-------------------------------MASGEFEE-------- 155
++ M+ KCG ++ A G F+E
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181
Query: 156 KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
+FS +L G++IH LK L+ D N+L+D Y+K ++ A
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMG-LDLDQFSANALVDMYSKAGEIEGAVAV 240
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F I +VSWNA++AG L + + AL M + +PN +LS
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVL------------HDCNDLALMLLDEMKGSGTRPNMFTLS 288
Query: 267 GVLAACAQVKGFK-LGKEIHGYVLR--HHIQLSTGVGI------------ALISIQGLGT 311
L ACA + GFK LG+++H +++ H L VG+ A + +
Sbjct: 289 SALKACAAM-GFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK 347
Query: 312 GSFV-WNSLIDMYGRCG 327
+ WN+LI Y +CG
Sbjct: 348 KDIIAWNALISGYSQCG 364
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 29/164 (17%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H H L K D + N L+ Y+KCR A + + +VSW+++L+GY
Sbjct: 2 ELHAH-LIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
GF EE AL F+ M ++ N + VL AC+ + +G+++HG
Sbjct: 61 GFVEE------------ALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMA 108
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+ + G + FV N+L+ MY +CG + +
Sbjct: 109 V----------------VTGFESDGFVANTLVVMYAKCGLLDDS 136
>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 158/584 (27%), Positives = 254/584 (43%), Gaps = 183/584 (31%)
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG-------------RMEMAS 150
AC++ K+ + V+ ++ S +F G+A + ++ ++ KCG R +M S
Sbjct: 60 ACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVS 119
Query: 151 --------------------------GEFEEKDFSNLSLLKH---------GKEIHPHHL 175
G F+ F+ SLLK G++IH +
Sbjct: 120 WTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAV 179
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K D D+ V ++L+D YA+C + +A F K+ K+ VSWNA+ I+
Sbjct: 180 KCD-WHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNAL------------IS 226
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
GF + GDGETAL F+ M++ + + S V ++ A++ + GK +H ++++ ++
Sbjct: 227 GFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM 286
Query: 296 STGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK-------- 331
+ G L+ + +GS + WN+++ + + G ++
Sbjct: 287 TAFAGNTLLDMYA-KSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEM 345
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
EG RYFEMMK EY++EP ++ + +V LL RAG
Sbjct: 346 RKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAGL 404
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------- 408
+ L F+ KMP EP++A C N + + AA H+FEL+P SG
Sbjct: 405 LNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNI 464
Query: 409 -----------------------------------KVHSFIAGDTSHSLVHKISEKLMRL 433
VH F+A D +H +I + ++
Sbjct: 465 YASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQI 524
Query: 434 YSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+I+K GY+ + HSEKLALAF LI G+ +R++KN+R+C
Sbjct: 525 SKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRIC 584
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCHS KY+SK REI++ D RFHHF +G+CSC DYW
Sbjct: 585 GDCHSAFKYISKVFG----REIVVRDTNRFHHFSNGSCSCADYW 624
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 36/156 (23%)
Query: 15 LTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------- 60
L N E T TY+ +F +L LE G VHAH+I ++ AF G
Sbjct: 245 LRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSM 304
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KAC 105
+F+++ ++++ +W +M+ + G +E V+ F + G+Y AC
Sbjct: 305 IDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTAC 364
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
S + GK ++ M E P +D F+
Sbjct: 365 SHGGLVKEGKRYFEMMKEYDLE-------PEIDHFV 393
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 180/676 (26%), Positives = 271/676 (40%), Gaps = 222/676 (32%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-----------CGVELCAFLGM----- 61
PD+ +T + C + LG Q H + C V++ A GM
Sbjct: 227 PDD--ITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEAN 284
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
F MP ++V SW +M+ Y+ +G +E+ V LF ++++ ++ DV
Sbjct: 285 TVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLF------------EQMQEEKIKMDVVT 332
Query: 120 YMISIK--------FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ +I +E V R +L IK + + S +++ L HGKEIH
Sbjct: 333 WSAAISGYAQRGLGYEALG-VCRQMLSSGIKPNEVTLIS---VLSGCASVGALMHGKEIH 388
Query: 172 ------PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLA 223
P L+K+ + +V N L+D YAKC+ + +A F + K++ +V+W M+
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ--PNTISLSGVLAACAQVKGFKLG 281
GY +Q+GD ALE S M + D Q PN ++S L ACA + +G
Sbjct: 449 GY------------SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIG 496
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI-----------Q 330
K+IH Y LR+ Q FV N LIDMY +CG I +
Sbjct: 497 KQIHAYALRN---------------QQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMME 541
Query: 331 KNE-GWR-----------------YFEMMKK----------------------------- 343
KNE W FE M++
Sbjct: 542 KNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEY 601
Query: 344 ------EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE-----PC----- 387
++ + P E Y C+VDLL RAG+ + L +++MP EP C
Sbjct: 602 FNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHG 661
Query: 388 NPDIAEHAARHLFELEPLSSGK-------------------------------------- 409
++ E+AA+ + EL + G
Sbjct: 662 KVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWV 721
Query: 410 -----VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-------------- 450
+F GD +H +I + L IK IGY +P G
Sbjct: 722 EGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGY---VPETGFALHDVDDEEKDDL 778
Query: 451 ---HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
HSEKLALA+G+++T G+ +R+ KNLR+CGDCH+ Y+S R + EII+ D+
Sbjct: 779 LFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMS----RIIDHEIILRDSS 834
Query: 508 RFHHFVDGACSCGDYW 523
RFHHF +G CSC YW
Sbjct: 835 RFHHFKNGLCSCKGYW 850
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 105/467 (22%), Positives = 195/467 (41%), Gaps = 87/467 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L+ S+ T PD T+ +F+ C +++++ G HA V G F+G
Sbjct: 117 LMHSLSWT-PDN--YTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYS 173
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
+F++MP +V SW S++ Y LG + + +F + +E
Sbjct: 174 RCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLV 233
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
V C+ + +GK + + ++ + N V ++DM+ K G M+ A+ FS
Sbjct: 234 NVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEAN-----TVFS 288
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---- 215
N+ + D++ N+++ Y++ + A F +++++ +
Sbjct: 289 NMPV------------------KDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W+A ++GYA Q G G AL +M+ + ++PN ++L VL+ CA V
Sbjct: 331 VTWSAAISGYA------------QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASV 378
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
GKEIH Y +++ + L G G + V N LIDMY +C +
Sbjct: 379 GALMHGKEIHCYAIKYPMDLRK---------NGHGDENMVINQLIDMYAKCKKVDIARA- 428
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHA 395
M E + + M+ ++ G + L + +M E P N A
Sbjct: 429 ----MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP-NAFTISCA 483
Query: 396 ARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
L LS GK +H++ + +++ +S L+ +Y++ IG
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIG 530
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 40/174 (22%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELCAFLG--- 60
T P+ T++ AL+ C L L +G Q+HA+ + C +++ A G
Sbjct: 473 TRPNAFTISCALV--ACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIG 530
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACS 106
+F+ M E+N +WTS+M Y + GY EE + +F + G V ACS
Sbjct: 531 DARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACS 590
Query: 107 ELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
G + + D+ +S E AC ++D+ + GR+ A EE
Sbjct: 591 HSGMIDQGMEYFNRMKTDFGVSPGPEHYAC----LVDLLGRAGRLNAALRLIEE 640
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 162/585 (27%), Positives = 249/585 (42%), Gaps = 164/585 (28%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH------RV 113
G+F++MPER+ SW +M+ Y G E LF V+ + + +
Sbjct: 144 GIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDE 203
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
+ V+D M E N+ ++ +++C RM+ A FE N+S
Sbjct: 204 ARRVFDGMP----EKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSW--------- 250
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
N+++ YA+ + A F ++ Q+ +SW A++AGYA G+
Sbjct: 251 --------------NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGY--- 293
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
GE AL F M + + N + + L+ CA++ +LGK++HG V++ +
Sbjct: 294 ---------GEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL 344
Query: 294 QLSTGVGIAL--------------ISIQGLGTGSFV-WNSLIDMYGRCG----------A 328
+ VG AL I +G+ V WN++I Y R G +
Sbjct: 345 ESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 404
Query: 329 IQK-----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
++K ++G YF M ++Y + + Y CM+DLL RAG
Sbjct: 405 MKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAG 464
Query: 366 QFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG------- 408
+ DD N MK MPFEP +A N ++ E AA+ +FE+EP +SG
Sbjct: 465 RLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSN 524
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
K+H+F GD+ H +I L
Sbjct: 525 LYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEE 584
Query: 433 LYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L ++KK GY+ HSEKLA+AFG+++ G P+RVIKNLR+
Sbjct: 585 LDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRV 644
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K++SK R II+ D++RFHHF G CSCGDYW
Sbjct: 645 CEDCHNAMKHISKIVG----RLIILRDSHRFHHFNGGQCSCGDYW 685
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/339 (20%), Positives = 130/339 (38%), Gaps = 108/339 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPER+V SW +M+ Y GY +E K+++D
Sbjct: 52 LFDQMPERDVVSWNAMLSGYAQNGYVKE-------------------------AKEIFDE 86
Query: 121 MI---SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
M SI + G +L +++ GR+E A FE K
Sbjct: 87 MPCKNSISWNG-------MLAAYVQNGRIEDARRLFESK--------------------- 118
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------- 229
+ +L+ N +M Y K L A F ++ ++ VSWN M++GYA G
Sbjct: 119 --ADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRL 176
Query: 230 FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
F E ++G+ Q G + A F M + N++S + ++A Q K
Sbjct: 177 FEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRM 232
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
+E+ + Q + + WN++I Y + G I + +F
Sbjct: 233 DQAREL----------------FEAMPCQNVSS----WNTMITGYAQNGDIAQARN--FF 270
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ M + ++ + ++ A++G ++ L+ +M
Sbjct: 271 DRMPQRDSI-----SWAAIIAGYAQSGYGEEALHLFVEM 304
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 61/236 (25%)
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
+ R L+ A F ++ ++ +VSWNAML+GYA G+ +E A E F M
Sbjct: 42 RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKE------------AKEIFDEM-- 87
Query: 256 TDMQP--NTISLSGVLAACAQVKGFKLGKEIH----------------GYVLRHHIQLST 297
P N+IS +G+LAA Q + + + GYV R+ + +
Sbjct: 88 ----PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDAR 143
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYC 355
G+ + WN++I Y + G + E R FE P + +
Sbjct: 144 GIFDRMPE-----RDEVSWNTMISGYAQNGELL--EAQRLFE-------ESPVRDVFTWT 189
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHA-------ARHLFELEP 404
MV + G D+ MP + S + N IA + AR LFE P
Sbjct: 190 AMVSGYVQNGMLDEARRVFDGMPEKNSVS--WNAIIAGYVQCKRMDQARELFEAMP 243
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 41/185 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ C ++ LELG QVH ++ G+E ++G +FE +
Sbjct: 315 TFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI 374
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRVGK 115
E+ V SW +M+ Y G+ +E + LF +L D+ GV ACS G
Sbjct: 375 EEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGT 434
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----EKDFSNLSLLKH 166
+ + DY I+ + C ++D+ + GR++ A + E D + L
Sbjct: 435 EYFYSMTQDYGITANSKHYTC----MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLG 490
Query: 167 GKEIH 171
IH
Sbjct: 491 ASRIH 495
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 183/643 (28%), Positives = 267/643 (41%), Gaps = 175/643 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
+YA IFQ + N ++LG Q HA +++ G++ AFL M+ MY
Sbjct: 79 SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLA-------------AKMVAMYASS 125
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI-SIKFEGNACVKRPVLDMFIK 142
G + V +F + + +Y+ +I + G L+ + +
Sbjct: 126 GDLDSAVVVFDRIDNPSSL--------------LYNSIIRAYTRHGXXXXXXXXLEAYAR 171
Query: 143 CGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
+ + F K ++LS + G+ +H L+ LE D V SL+D Y KC
Sbjct: 172 MHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVG-LEGDFYVGASLIDMYVKCG 230
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------------FREEITGFTQ 239
+ A F K+ + + SWNA++AGY G + I+G+TQ
Sbjct: 231 VIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQ 290
Query: 240 YGDGETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
G E AL F M+Q ++M+PN +++ VL ACAQ + G+ IH + + L++
Sbjct: 291 NGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNS 350
Query: 298 GVGIALIS-----------------IQGLGTGSFVWNSLIDMYGR--CG----------- 327
V AL I G WN++I Y CG
Sbjct: 351 SVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENML 410
Query: 328 --AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+Q + G +F M +++EP +E Y C+VDLL RAG+
Sbjct: 411 RAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRL 470
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
+ + +MP + + C N +IAE AAR LF LEP +SG
Sbjct: 471 VEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLY 530
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
K H F+ D SH +I + L L
Sbjct: 531 AEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALP 590
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IK GY+ K HSEKLA+AFGL++T PG LRV KNLR+CG
Sbjct: 591 EKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICG 650
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK++SK EREII+ D RFH F DG+CSCGDYW
Sbjct: 651 DCHAATKFISKI----YEREIIVRDLNRFHCFKDGSCSCGDYW 689
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 175/635 (27%), Positives = 266/635 (41%), Gaps = 194/635 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEK 64
TY I C LE G +H+H+ G + + A G +F
Sbjct: 331 TTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYT 390
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
MP+R++ SW +++ Y E + L+ + EGV + G+ + +++S
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGV----------KPGRVTFLHLLS- 439
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
AC +N S GK IH L+ ++S+
Sbjct: 440 -----AC---------------------------ANSSAYADGKMIHEDILRSG-IKSNG 466
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+ N+LM+ Y +C L A F + + ++SWN+M+AG+A Q+G E
Sbjct: 467 HLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA------------QHGSYE 514
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
TA + F M +++P+ I+ + VL+ C + +LGK+IHG + +QL +G ALI
Sbjct: 515 TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574
Query: 305 SI----QGLGTGSFVWNSL--------IDMYGRCG-------AIQ-----KNEGWR---- 336
++ L V++SL M G C AI+ +NEG+R
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDG 634
Query: 337 ---------------------YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
F M+ EY + P +E Y C+V LL RA +F + +
Sbjct: 635 STFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLIN 694
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFEL----------------------- 402
+MPF P +A C N +AEHAA + +L
Sbjct: 695 QMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDD 754
Query: 403 ---------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
EP S +H FIA D SH +I +L RL E+++ GY
Sbjct: 755 VAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 814
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ C HSE+LA+A+GLI T PG+P+R+ KNLR+CGDCH+ +K+
Sbjct: 815 FPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKF 874
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK REII D+ RFH F +G CSC DYW
Sbjct: 875 ISKLVG----REIIARDSNRFHSFKNGKCSCEDYW 905
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 144/385 (37%), Gaps = 105/385 (27%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
TY + Q C + L ++HA ++ GV FL +F++
Sbjct: 28 ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
MP R+V SW S++ Y G+ ++ LF + + G + AC + G
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS------------------GEFEEK 156
K ++ +I ++ + V+ +L M+ KCG + A G + +K
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207
Query: 157 D------------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
F+ S+L GK IH ++ + L SD+ V
Sbjct: 208 AYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVE-EGLNSDIRV 266
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+ +C + A F I + +V +NA++A A Q+G A
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALA------------QHGHNVEA 314
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
E + RM + N + +L AC+ K + GK IH + IS
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSH----------------ISE 358
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQK 331
G + + N+LI MY RCG + K
Sbjct: 359 DGHSSDVQIGNALISMYARCGDLPK 383
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M + +T+A + C LELG Q+H + G++L LG
Sbjct: 519 LFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYI 578
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
+F + R+V SWT+M+G G + + LF+ + +EG
Sbjct: 579 RCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 186/708 (26%), Positives = 283/708 (39%), Gaps = 212/708 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL-------------------I 49
+ + M L+ VT A + C + +L G Q+H++L +
Sbjct: 231 IFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYV 290
Query: 50 VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------- 101
CGV + A L +F+ NV W M+ Y + + +LF ++ GV
Sbjct: 291 KCGVIVEA-LEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYP 349
Query: 102 --YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEK 156
+ C+ + +G+ ++ I FE + V ++DM+ K G ++ A E K
Sbjct: 350 CLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK 409
Query: 157 D-----------------------FSNLSL----------------------LKHGKEIH 171
D F ++ L ++ G++IH
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIH 469
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ +D+ + N+L++ YA+C K A F I+ K ++WN M++G+A G
Sbjct: 470 SR-VYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLY 528
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
EE ALE F +M Q ++ N + ++A A + K GK+IH V++
Sbjct: 529 EE------------ALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT 576
Query: 292 HIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG-------- 327
T V ALIS+ G GS WN++I + G
Sbjct: 577 GCTSETEVANALISLYG-KCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDL 635
Query: 328 -------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
++ N EG YF+ M E+ + P + Y C+VD+L
Sbjct: 636 FDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILG 695
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK--- 409
RAGQ D F+++MP ++ C N +I E AA++L ELEP S
Sbjct: 696 RAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVL 755
Query: 410 ----------------------------------------VHSFIAGDTSHSLVHKISEK 429
VH+F GD H L H+I +
Sbjct: 756 LSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKY 815
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L + KIGY+ K A HSEKLA+AFGL+S P PLRVIKN
Sbjct: 816 LADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKN 875
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K+ S+ REI++ D YRFHHF +G CSCGD+W
Sbjct: 876 LRVCNDCHTWMKFTSEV----MGREIVLRDVYRFHHFNNGNCSCGDFW 919
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 133/327 (40%), Gaps = 91/327 (27%)
Query: 22 TVTYALIFQRCP-KLNNLELGIQVHAHLIVCG-----------VELCAFLGM-------F 62
+V +A + C + + L +HA I CG ++L A G+ F
Sbjct: 41 SVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVF 100
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
E++ R+ SW +M+ Y G EE V L++ + GV Y++
Sbjct: 101 EQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPT--------------PYVL 146
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
S +AC K +L + G+ +H K+ S
Sbjct: 147 SSVL--SACTKA---------------------------ALFEQGRLVHAQVYKQGSC-S 176
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ +V N+L+ Y + L +A FS++ V++N +++ +A Q G+
Sbjct: 177 ETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHA------------QCGN 224
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE+ALE F M + P+ ++++ +LAACA + GK++H Y+L+
Sbjct: 225 GESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLK------------ 272
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAI 329
G+ + SL+D+Y +CG I
Sbjct: 273 ----AGMSPDYIIEGSLLDLYVKCGVI 295
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 164/611 (26%), Positives = 263/611 (43%), Gaps = 185/611 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ +++ I + +L GVE A L F KMP +++ SW +++ + G +
Sbjct: 127 LFDKIPEPDSVSYNIMLVCYLRSYGVE--AALAFFNKMPVKDIASWNTLISGFAQNGQMQ 184
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
+ +LF S+ E N ++ +++ G +E
Sbjct: 185 KAFDLF-----------------------------SVMPEKNGVSWSAMISGYVEHGDLE 215
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
A E+ + N+ + ++V +++ Y K +++A F
Sbjct: 216 AA-----EELYKNVGM------------------KSVVVETAMLTGYMKFGKVELAERIF 252
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K+LV+WN+M+AGY + E L+ F MI++ ++PN +SLS
Sbjct: 253 QRMAVKNLVTWNSMIAGY------------VENCRAEDGLKVFKTMIESRVRPNPLSLSS 300
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------IQGLGTG 312
VL C+ + LG+++H V + + T +LIS ++
Sbjct: 301 VLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKD 360
Query: 313 SFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYFE 339
WN++I Y + GA +K + G +YF+
Sbjct: 361 VISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFK 420
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
MKKE+ +E Y C++DLL RAG+ D+ ++ +K+MPF+P +A C N
Sbjct: 421 SMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNL 480
Query: 390 DIAEHAARHLFELEPLSS-------------------GKV-------------------- 410
D+AE AAR+L L+P S+ KV
Sbjct: 481 DLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEI 540
Query: 411 ----HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
H F + D H + I +KL L ++K GY+ K HS
Sbjct: 541 KSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHS 600
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGL+ T+PG+P+RV KNLR+CGDCH K++S EK REII+ D RFHHF
Sbjct: 601 EKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEK----REIIVRDTTRFHHF 656
Query: 513 VDGACSCGDYW 523
+G CSCGDYW
Sbjct: 657 RNGFCSCGDYW 667
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 171/647 (26%), Positives = 274/647 (42%), Gaps = 187/647 (28%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSEL 108
L +F+ MPER+V SW M+ + G E +++ + +GV AC+ L
Sbjct: 224 LELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARL 283
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLS----- 162
R GK ++ +I + V +++++ KCG + A G F D +N++
Sbjct: 284 SSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLI 343
Query: 163 --LLKHG----------------------------------------KEIHPHHLKKDDL 180
L+HG +++H LK +
Sbjct: 344 AGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQI 403
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----FREEITG 236
++ ++V+NSL+ YAKC L+ A F + +K +VSW +M+ ++ G RE G
Sbjct: 404 QA-VVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDG 462
Query: 237 ---------------FTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKL 280
+ Q+G E L ++ M+ + D++P+ ++ + CA + KL
Sbjct: 463 MSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKL 522
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYGR 325
G +I G ++ + L T V A+I++ L V WN++I Y +
Sbjct: 523 GDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G ++ EG YF+MMK+ +N+ P +E
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLE 642
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
+ CMVDLL RAG + + + +MP +P++ C N ++AE AA+H+FEL
Sbjct: 643 HFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFEL 702
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
+ SG KVH F A D S
Sbjct: 703 DSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVS 762
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACG---HSEKLALAFGLISTSPGSPLRVIKNL 476
H V I +KL L +I ++GY++ HSEKLA+AFGL+S P+ ++KNL
Sbjct: 763 HPQVIAIRKKLDELMEKIARLGYVRTDSPRSEIHHSEKLAVAFGLMSLPAWMPIHIMKNL 822
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH+ K +S RE ++ D RFHHF G+CSCGDYW
Sbjct: 823 RICGDCHTVIKLISSVTG----REFVIRDAVRFHHFNGGSCSCGDYW 865
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 115/293 (39%), Gaps = 78/293 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F +MP R+V SW ++M GY++ L L S + HR G D
Sbjct: 93 LFGRMPARDVASWNTLMS-----GYFQSQQYLASLE---------SFVSMHRSG-DSSPN 137
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ + +C G E+ + L LL ++K
Sbjct: 138 AFTFAYAMKSC-------------------GALGERSLA-LQLLGM--------VQKFGS 169
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-------------- 226
+ D V +L+D + +C + +A F +IK+ + N+ML GY
Sbjct: 170 QDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDS 229
Query: 227 -----LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+ + ++ +Q G AL+ M ++ ++ + + L ACA++ + G
Sbjct: 230 MPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWG 289
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
K++H V+R+ L I +V ++L+++Y +CG ++ +G
Sbjct: 290 KQLHAQVIRN-----------LPCID-----PYVASALVELYAKCGCFKEAKG 326
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 57/230 (24%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L D +++ +N +++ Y K L A F ++ + + SWN +++GY F+ +
Sbjct: 62 LLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGY----FQSQ- 116
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
QY +LE F M ++ D PN + + + +C + L ++ G V +
Sbjct: 117 ----QY---LASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGS 169
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK----------- 342
Q + V A L+DM+ RCG + + R F +K
Sbjct: 170 QDDSDVAAA----------------LVDMFVRCGTV--DLASRLFVRIKEPTIFCRNSML 211
Query: 343 ----KEYNMEPAME-----------QYCCMVDLLARAGQFDDTLNFMKKM 377
K Y ++ A+E + MV L+++G+ + L+ + M
Sbjct: 212 VGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDM 261
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 178/643 (27%), Positives = 268/643 (41%), Gaps = 193/643 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+NP + T L+ + N+L + VH L+ G + FL
Sbjct: 65 SNPTQQTCE--LLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDN 122
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F+K +R ++ W ++ + G +++ L+ + GV D
Sbjct: 123 ARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGV------------SSDR 170
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ Y +K ACV L +S L+ GKEIH H L+
Sbjct: 171 FTYTYLLK----ACVASECL-----------------------VSFLQKGKEIHAHILRH 203
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ + V +LMD YA+ + A F ++ K++VSW+AM+A YA G E
Sbjct: 204 G-YGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYE---- 258
Query: 238 TQYGDGETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
ALE F M+ D PN++++ VL ACA + GK IH Y+LR +
Sbjct: 259 --------ALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDS 310
Query: 296 STGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK--------- 331
V ALI++ L +G + WNSLI YG G +K
Sbjct: 311 ILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMI 370
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG + FE M KE+ ++P++E Y CMVDLL RA +
Sbjct: 371 DHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRL 430
Query: 368 DDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG--------- 408
D+ ++ + EP C+ ++AE A++ LF+LEP ++G
Sbjct: 431 DEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIY 490
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
K++SF + D + ++ L+ L
Sbjct: 491 AEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLS 550
Query: 435 SEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+E+K+ GY + GHSEKLA+AFGLI+TS G +R+ KNLR+C
Sbjct: 551 NEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCE 610
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS TK++SK +REI++ D RFHHF DG CSCGDYW
Sbjct: 611 DCHSVTKFISKFA----DREIMVRDLNRFHHFKDGVCSCGDYW 649
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 9 LLQSMDLTNPDEC--TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM 61
L + M L D +VT + Q C LE G +HA+++ G++ + A + M
Sbjct: 262 LFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITM 321
Query: 62 -------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------- 100
F++M +++V W S++ Y + GY + + +F +ID G
Sbjct: 322 YARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISF 381
Query: 101 --VYKACSELKDHRVGKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
V ACS GK +++ M I E AC ++D+ + R++ A+
Sbjct: 382 ISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYAC----MVDLLGRANRLDEAAKII 437
Query: 154 EE 155
E+
Sbjct: 438 ED 439
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 160/617 (25%), Positives = 261/617 (42%), Gaps = 182/617 (29%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
NPD T+ + + C L+NL +G+QVH ++ G++ F+G
Sbjct: 134 NPDH--YTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREA 191
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL------FYLLIDEGVYKACS------ 106
+ ++MP R+V SW SM+ Y G +++ + + L D G + S
Sbjct: 192 RKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYT 251
Query: 107 ---------ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
+ + K++ + + I N + + +F++ M
Sbjct: 252 SLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311
Query: 158 F----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
+LS L G+ +H +++K +L+ +LL+ N+L+D YAKC L+ A F K++ +
Sbjct: 312 LLPACGDLSALFLGRRLH-KYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLR 370
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+VSW +M++ Y + G G A+ F++M+ + P++I+ VL+AC+
Sbjct: 371 DVVSWTSMMSAYG------------RSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
TG L+D +
Sbjct: 419 H------------------------------------TG------LLD-----------Q 425
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC 387
G YF MM ++Y + P +E + CMVDL RAG+ ++ +F+K+MP EP+ C
Sbjct: 426 GRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485
Query: 388 NP----DIAEHAARHLFELEPLSSG----------------------------------- 408
DI AA LF+L P SG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545
Query: 409 --------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC----------- 449
+VH+F+AGD H I +L L ++K++GY+ + +
Sbjct: 546 ISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKEC 605
Query: 450 ---GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
HSEKLA+ F +++T G+P+R+ KNLR+CGDCH K +SK R II+ D
Sbjct: 606 HLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIV----SRNIIVRDC 661
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF +G CSCGDYW
Sbjct: 662 NRFHHFSNGICSCGDYW 678
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 148/344 (43%), Gaps = 65/344 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++ E+NV + M+ Y Y E +++F +++ V KACS L +
Sbjct: 93 IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
RVG V+D ++ + + N + ++ M+ KCG + A ++ + ++
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212
Query: 162 --------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
L+ KE+ +L D + + + S + Y ++ H F ++ +K
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHD---AGTMASLSPVVCYTSLENVQYIHNMFERMTKK 269
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+L+SWN M+A Y E A+ F +M + M+P+ ++++ +L AC
Sbjct: 270 NLISWNVMIAIYVNNSMPNE------------AVSLFLQMEECGMKPDAVTIASLLPACG 317
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ LG+ +H Y+ + ++Q + + N+L+DMY +CG ++ E
Sbjct: 318 DLSALFLGRRLHKYIEKGNLQPNL----------------LLENALLDMYAKCGCLE--E 359
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
F+ M+ + + M+ R+GQ D + KM
Sbjct: 360 ARDVFDKMRLR-----DVVSWTSMMSAYGRSGQGYDAVALFAKM 398
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 40/178 (22%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----- 59
V+L LQ + PD VT A + C L+ L LG ++H ++ ++ L
Sbjct: 291 VSLFLQMEECGMKPD--AVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALL 348
Query: 60 -------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
+F+KM R+V SWTSMM Y G + V LF ++D G
Sbjct: 349 DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408
Query: 101 ----VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G+ + Y I + E AC ++D+F + G +E A
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFAC----MVDLFGRAGEVEEA 462
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 165/634 (26%), Positives = 267/634 (42%), Gaps = 187/634 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL--IDE----GVYKACSELKDHRVG 114
+F++MP R++ SW +M+ Y G +E + L L +D + AC+E D G
Sbjct: 207 LFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRG 266
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF------------- 158
++ Y I E V ++D++ + G ++ F+ +D
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 159 --------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLV 186
S L ++ + + L+K D+ +
Sbjct: 327 EQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITI 386
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+++ YAK + A F+ + K ++SWN +++GYA GF E A
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASE------------A 434
Query: 247 LEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+E ++ M + ++ N + VL AC+Q + G ++HG +L++ + L VG +L
Sbjct: 435 IEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLA 494
Query: 305 SIQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------------ 331
+ G S WN+LI +G G +K
Sbjct: 495 DMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 554
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
+EG FEMM+ +Y + P+++ Y CMVDL RAGQ + LNF+K
Sbjct: 555 TFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKS 614
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEP---------------------- 404
MP +P ++ C N D+ + A+ HLFE+EP
Sbjct: 615 MPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 674
Query: 405 -----LSSGK----------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
++SGK V F G+ +H + ++ +L L+ ++K +GY+
Sbjct: 675 DEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYV 734
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSE+LA+AF LI+T + +R+ KNLR+CGDCHS TK++
Sbjct: 735 PDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFI 794
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK EREII+ D+ RFHHF +G CSCGDYW
Sbjct: 795 SKIT----EREIIVRDSNRFHHFKNGVCSCGDYW 824
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 47/229 (20%)
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK---- 165
DH +DVY + + I G A V I+C + M S + + S+LK
Sbjct: 110 DHIHNRDVYAWNLMISGYGRAGYSSEV----IRCFSLFMLSSGLQPDYRTFPSVLKACRN 165
Query: 166 --HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAM 221
G +IH LK + D+ V SL+ Y CRY V + + F ++ + + SWNAM
Sbjct: 166 VTDGNKIHCLALKFGFMW-DVYVAASLIHLY--CRYGAVVNARILFDEMPTRDMGSWNAM 222
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++GY G +E + DG A++ ++++ +L+AC + F G
Sbjct: 223 ISGYCQSGNAKEALTLS---DGLRAMD-------------SVTVVSLLSACTEAGDFNRG 266
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
IH Y ++H GL + FV N LID+Y G+++
Sbjct: 267 VTIHSYSIKH----------------GLESELFVSNKLIDLYAEFGSLK 299
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 84/215 (39%), Gaps = 34/215 (15%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ K +H + + ++ ++ ++ L++ Y + +A F I + + +WN M++
Sbjct: 67 LQSAKCLHARLVVSNAIQ-NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSR-MIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
GY G+ E+ + FS M+ + +QP+ + VL AC V G
Sbjct: 126 GYGRAGYSSEV------------IRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GN 170
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+IH L+ G +V SLI +Y R GA+ N + EM
Sbjct: 171 KIHCLALKF----------------GFMWDVYVAASLIHLYCRYGAV-VNARILFDEMPT 213
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
++ AM C A D L M +
Sbjct: 214 RDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSV 248
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + C + L G+++H L+ G+ L F+G +F ++
Sbjct: 454 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQI 513
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
P N W +++ + G+ E+ V LF ++DEGV ACS G+
Sbjct: 514 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGE 573
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ DY I+ + C ++D++ + G++E+A
Sbjct: 574 WCFEMMQTDYGITPSLKHYGC----MVDLYGRAGQLEIA 608
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 177/676 (26%), Positives = 274/676 (40%), Gaps = 195/676 (28%)
Query: 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79
EC + + + N + + A+ GVE + +F+++ E +V SW SM+
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE--SAHNLFDELSEPDVVSWNSMING 270
Query: 80 YNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGN 129
V G+ + +F ++ GV AC+ + + +G+ ++ + + F
Sbjct: 271 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE 330
Query: 130 ACVKRPVLDMFIKCGRMEMAS-------------------------------GEFEEKDF 158
+LDM+ KCG + A+ G F+E
Sbjct: 331 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQS 390
Query: 159 SNL-----------------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ S L G+++H + +K + + S+L V N+L++ YAKC ++
Sbjct: 391 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVE 449
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A FSKI K +VSWN M+ GY+ E ALE F M Q +P+
Sbjct: 450 EARLVFSKIPVKDIVSWNTMIGGYSQNLLPNE------------ALELFLDM-QKQFKPD 496
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV------ 315
I+++ VL ACA + G+EIHG++LR V AL+ + G V
Sbjct: 497 DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYA-KCGLLVLAQLLF 555
Query: 316 ----------WNSLIDMYG---------------RCGAIQK------------------N 332
W +I YG R I+ N
Sbjct: 556 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLN 615
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EP 386
EGW++F M+ E +EP +E Y C+VDLLAR G F++ MP +P +
Sbjct: 616 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675
Query: 387 C----NPDIAEHAARHLFELEPLSS----------------------------------- 407
C + +AE A H+FELEP ++
Sbjct: 676 CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 735
Query: 408 --------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
GK + F+AG++ H KI L +L +++ Y K
Sbjct: 736 GCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKE 795
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
+ CGHSEK A+AFG+++ PG +RV KN R+CGDCH K++SK K EI++ D
Sbjct: 796 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTK----MEIVLRD 851
Query: 506 NYRFHHFVDGACSCGD 521
+ RFHHF DG CSC D
Sbjct: 852 SNRFHHFKDGLCSCRD 867
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 92/386 (23%), Positives = 156/386 (40%), Gaps = 102/386 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+Y + Q C + +LE G +VH+ +I G+ + LG +F+K+
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
VF W +M Y +G + E V+LF + GV C Y +
Sbjct: 156 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC------------YTF----- 198
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
CV +KC F+ L +K K +H + LK S+
Sbjct: 199 ----TCV--------LKC--------------FAALGKVKECKRVHGYVLKLG-FGSNTA 231
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V NSL+ Y K ++ AH F ++ + +VSWN+M+ G + GF G+G
Sbjct: 232 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS---------GNG-- 280
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
LE F +M+ ++ + +L VL ACA + LG+ +HG+ ++ A S
Sbjct: 281 -LEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVK-----------ACFS 328
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+ + + N+L+DMY +CG + N F M + + + ++ R G
Sbjct: 329 EEVVFS-----NTLLDMYSKCGNL--NGATEVFVKMG-----DTTIVSWTSIIAAYVREG 376
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDI 391
+ D + F+ ++ PDI
Sbjct: 377 LYSDAIGL-----FDEMQSKGVRPDI 397
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI------------------ 49
L L PD+ +T A + C L L+ G ++H H++
Sbjct: 485 LFLDMQKQFKPDD--ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 542
Query: 50 -VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
CG+ + A L +F+ +P++++ SWT M+ Y + G+ E ++ F
Sbjct: 543 AKCGLLVLAQL-LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTF 586
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 167/587 (28%), Positives = 257/587 (43%), Gaps = 185/587 (31%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------- 155
K C+ L GK ++ +++ +F + ++ +L+++ KCG + A F+E
Sbjct: 23 KRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVV 82
Query: 156 --------------------------------KDFSNLSLLK-----------HGKEIHP 172
F+ SLLK G+++H
Sbjct: 83 TWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHG 142
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
L+ +S++ V+ +++D YA+C +L+ A F + K+ VSWNA++AGYA
Sbjct: 143 LCLRYG-YDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYA------ 195
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+ G G+ A FS M++ +++P + S VL ACA + + GK +H +++
Sbjct: 196 ------RKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWG 249
Query: 293 IQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG----AIQK- 331
+L VG L+ + +GS WNS++ Y + G A+Q+
Sbjct: 250 EKLVAFVGNTLLDMYA-KSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRF 308
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+EG YF+MMKK YN+EP + Y MVDLL R
Sbjct: 309 EEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGR 367
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL----------- 402
AG D + F+ +MP +P++A C N ++ +AA +FEL
Sbjct: 368 AGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLL 427
Query: 403 ---------------------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKL 430
EP S +VH F+A D +H +I
Sbjct: 428 YNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMW 487
Query: 431 MRLYSEIKKIGYM---KRIPACG-----------HSEKLALAFGLISTSPGSPLRVIKNL 476
++ +IK+IGY+ + C HSEKLALAF L++T PGS +R+ KN+
Sbjct: 488 EQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNI 547
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCHS K+VSK EREII+ D RFHHF DGACSC DYW
Sbjct: 548 RICGDCHSAFKFVSKLV----EREIIVRDTNRFHHFCDGACSCEDYW 590
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 28/169 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L +M N TY+ + C + +LE G VHA +I G +L AF+G
Sbjct: 206 LFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYA 265
Query: 61 ----------MFEKMPERNVFSWTSMMGMYN-------VLGYYEEIVNLFYLLIDEG--- 100
+F+++ +R+V SW SM+ Y+ L +EE++ D
Sbjct: 266 KSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLC 325
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G+ +D M E ++D+ + G ++ A
Sbjct: 326 VLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRA 374
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 172/705 (24%), Positives = 287/705 (40%), Gaps = 206/705 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGMFE 63
L +SM L T + + C L ++ G +H ++ G E + + M+
Sbjct: 149 LFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 208
Query: 64 K---------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------- 101
K +N WT+M+ Y G + V F + +GV
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268
Query: 102 ---YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
ACS + G+ V+ +++ F N V+ ++DM+ KCG ++ A E +
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMED 328
Query: 159 SNL--------SLLKHG---------KEIHPHHLKKDD---------------------- 179
++ ++HG K +H ++K DD
Sbjct: 329 DDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHG 388
Query: 180 ------LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
E+ LV+N+L+D YAK + A+ F K+ +K ++SW +++ GYA
Sbjct: 389 LIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA------- 441
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q E +L+ F M T + P+ ++ +L+ACA++ + GK++H ++ +
Sbjct: 442 -----QNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGL 496
Query: 294 QLSTGVGIALISIQGL------GTGSFV---------WNSLIDMYGRCGAIQK------- 331
+ S V +L+++ FV W ++I Y + G +
Sbjct: 497 RWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDA 556
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG +YF+ M K Y ++P E Y CM+DL R+G
Sbjct: 557 MVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSG 616
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS-------- 407
+ D+ + +M +P + C N ++AE AA +LFELEP+++
Sbjct: 617 KLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSN 676
Query: 408 -----------------------------------GKVHSFIAGDTSHSLVHKISEKLMR 432
+V++FI+ D H +I K+
Sbjct: 677 MYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDE 736
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
+ IK+ GY+ K + HSEKLA+AFGL++ P +P+R+ KNLR+
Sbjct: 737 IILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRV 796
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCHS KY+S R R II+ D+ FHHF +G CSCGDYW
Sbjct: 797 CGDCHSAMKYIS----RVFTRHIILRDSNCFHHFREGECSCGDYW 837
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 36/185 (19%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------------- 233
N L++ +K + A F K+ QK SWN M++ Y G E
Sbjct: 68 TNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127
Query: 234 ------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+G+ ++G A + F M + + +L VL C+ + + G+ IHG+
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG-WRYFEMMKKEYN 346
V+++ G FV L+DMY +C + + E ++ E +K +
Sbjct: 188 VVKN----------------GFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHV 231
Query: 347 MEPAM 351
+ AM
Sbjct: 232 LWTAM 236
>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
Length = 677
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 170/626 (27%), Positives = 267/626 (42%), Gaps = 157/626 (25%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
N LGI++ CG E C +F+++ ++NV + M+ Y G Y++ + +F +
Sbjct: 70 NPSLGIKLMRAYAACG-EPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTM 128
Query: 97 IDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146
++G Y KACS + VG ++ ++ + + N + ++ M+ KC +
Sbjct: 129 ANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWL 188
Query: 147 EMASGEFEE---KDFSNLSLLKHGKEIHPH---------HLKKDDLESDLLVNNSLMDFY 194
+ A +E +D + + + G + ++ L+ D SL+
Sbjct: 189 DAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAV 248
Query: 195 AKCRYLKVAHCK--FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
V + K F K+K+K L+SWN M+A Y E A++ + +
Sbjct: 249 TNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNE------------AVDLYLQ 296
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI------ 306
M ++P+ +S+S VL AC + LG+ IH YV R ++ + + ALI +
Sbjct: 297 MQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGC 356
Query: 307 ---------QGLGTGSFVWNSLIDMYGRCGAIQK-------------------------- 331
Q + W S+I YG G +
Sbjct: 357 LKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAA 416
Query: 332 -------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP--- 381
+EG F +M EY + P +E Y CMVDLL RAG+ D+ + ++MP EP
Sbjct: 417 CSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNER 475
Query: 382 ---SSAEPC----NPDIAEHAARHLFELEPLSSG-------------------------- 408
S C + +IA AA HLF+L P SG
Sbjct: 476 VWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMN 535
Query: 409 -----------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC-- 449
V++F+AGD SH+ +I + L L +K++GYM +
Sbjct: 536 SKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALH 595
Query: 450 ------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRER 497
HSEKLA+ F +++T PGS +R+ KN+R+CGDCH TK +SK
Sbjct: 596 DVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIA---- 651
Query: 498 EREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D +RFHHF DG CSCGDYW
Sbjct: 652 EREIIIRDTHRFHHFRDGVCSCGDYW 677
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 39/212 (18%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K++H L +L + + LM YA C F +I K++V +N M+ Y
Sbjct: 55 KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G ++ AL F M P+ + VL AC+ +G +IHG
Sbjct: 115 NGLYQD------------ALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGA 162
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
V++ GL ++ N L+ MYG+C ++ + ++ +
Sbjct: 163 VVK----------------LGLDMNLYIGNGLVSMYGKC---------KWLDAARRVLDE 197
Query: 348 EPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377
P M + MV A+ G+F+D L ++M
Sbjct: 198 MPGRDMVSWNSMVAGYAQNGRFNDALKLCREM 229
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 188/726 (25%), Positives = 294/726 (40%), Gaps = 208/726 (28%)
Query: 1 WVIKNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCG----VEL 55
W + L M+ P T V+ AL K + L LG Q+H G
Sbjct: 94 WEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN 153
Query: 56 CAFLGMFEKM-------------PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV- 101
A + M+ K+ +R++ +W SM+ ++ + E + L++ EGV
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVK 213
Query: 102 ---------YKACSELKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRME---- 147
ACS L R GK+++ Y + N+ V ++DM+ CG++E
Sbjct: 214 PDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRL 273
Query: 148 -------------------MASGEFEEKD-------------FSNLSLLK---------- 165
A E +EK +SN + +
Sbjct: 274 VFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCE 333
Query: 166 ---HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+ IH + +K+ LE++ + N+L+D Y++ +K + F ++ + +VSWN ++
Sbjct: 334 GISRKEGIHGYVIKRG-LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTII 392
Query: 223 AGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
Y + G + + + + T ++ Q +PN+I+L VL CA +
Sbjct: 393 TSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSAL 452
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLIDMY 323
GKEIH Y +R+ + VG AL+ + L F WN +I Y
Sbjct: 453 AKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAY 512
Query: 324 GRCGAIQK--------------------------------------NEGWRYFEMMKKEY 345
G G ++ +EG F MK E+
Sbjct: 513 GMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEH 572
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEH 394
+EPA + Y C+VDL+ RAG+ ++ + MP F+ A N +I E
Sbjct: 573 GIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEI 632
Query: 395 AARHLFELEP-------------LSSG------------------------------KVH 411
AA +L +L+P S+G +VH
Sbjct: 633 AAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVH 692
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLAL 457
F+AGD SH K+ + L L +KK GY+ K CGHSEKLA+
Sbjct: 693 KFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAI 752
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFG+++T PG+ +RV KNLR+C DCH+ +K++SK E +REII+ D RFHHF DG C
Sbjct: 753 AFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIE----DREIILRDARRFHHFKDGTC 808
Query: 518 SCGDYW 523
SCGDYW
Sbjct: 809 SCGDYW 814
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 130/334 (38%), Gaps = 91/334 (27%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-------------VEL---CAFLG 60
+PD + + + + L LG Q+HAH+ G V + C LG
Sbjct: 7 SPD--NFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD 116
+F+++ ER+ SW S++ +E + F L++ EG
Sbjct: 65 DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEG---------------- 108
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
FE ++ ++ M + C + G L GK+IH +
Sbjct: 109 ---------FEPSSFT---LVSMALACSNLRKRDG------------LWLGKQIHGCCFR 144
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K + NN+LM YAK L A + + LV+WN+M I+
Sbjct: 145 KGHWRT--FSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSM------------ISS 190
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
F+Q AL F M+ ++P+ ++ + VL AC+ + + GKEIH Y LR +
Sbjct: 191 FSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIE 250
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
SFV ++L+DMY CG ++
Sbjct: 251 N---------------SFVGSALVDMYCNCGQVE 269
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 32/138 (23%)
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
MI + P+ + VL A A ++ LGK+IH +V + G G
Sbjct: 1 MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFK------------------FGYG 42
Query: 313 SF----VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
SF + N+L++MYG+CG + + ++ F+ + + + + ++ L R +++
Sbjct: 43 SFSSVTIDNTLVNMYGKCGGL--GDAYKVFDRITERDQV-----SWNSIISALCRFEEWE 95
Query: 369 DTLNFMKKM---PFEPSS 383
+ + M FEPSS
Sbjct: 96 VAIKAFRLMLMEGFEPSS 113
>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
Length = 744
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 177/628 (28%), Positives = 268/628 (42%), Gaps = 182/628 (28%)
Query: 39 ELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMY 80
ELG +HA + G E AF+G +F+ + +++ SWT M+ +
Sbjct: 156 ELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCF 215
Query: 81 NVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
++E + LF + G V+KAC L+ VGK V+ + ++E +
Sbjct: 216 AENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDL 275
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEE---KD------------------------------ 157
V +LD++ K G ++ A FEE KD
Sbjct: 276 YVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQA 335
Query: 158 ------FSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
F+ S+L+ G +IH H +K L SD+ V+N+LMD YAKC ++
Sbjct: 336 LVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG-LHSDVFVSNALMDVYAKCGRMEN 394
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ F++ ++ V+WN ++ G+ Q GDGE AL F M++ +Q
Sbjct: 395 SMELFAESPHRNDVTWNTVIVGH------------VQLGDGEKALRLFLNMLEYRVQATE 442
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
++ S L ACA + + G +IH ++ GV A + L+D
Sbjct: 443 VTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANA-----------GLLD- 490
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
+G YF M +++ +EP +E Y CMV LL R G D + + ++PF+PS
Sbjct: 491 ----------QGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPS 540
Query: 383 --------SAEPCNPDI--AEHAARHLFELEPL--------------------------- 405
A + DI +A+ + E+EP
Sbjct: 541 VMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKN 600
Query: 406 ----------------SSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------ 443
S G VHSF GDTSH V I+ L L+ + KK GY+
Sbjct: 601 MKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVV 660
Query: 444 --------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
K HSE+LAL+FG+I T GSP+R++KNLR+C DCH+ K +SK
Sbjct: 661 LLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKV--- 717
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
+REI++ D RFHHF +G CSCGDYW
Sbjct: 718 -VQREIVVRDINRFHHFQEGLCSCGDYW 744
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/341 (24%), Positives = 138/341 (40%), Gaps = 97/341 (28%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------------- 100
LC +F++MPERN S+ +++ Y + E + LF L EG
Sbjct: 89 LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKL 148
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----- 154
V C EL G ++ + + E NA V ++D + CGR+++A F+
Sbjct: 149 LVSTDCGEL-----GWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYK 203
Query: 155 ----------------------------------EKDFSNLSLLKH---------GKEIH 171
+F+ S+ K GK +H
Sbjct: 204 DMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVH 263
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
LK E DL V +L+D Y K + A F +I +K ++ W+ M+A YA
Sbjct: 264 GCALKS-RYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYA----- 317
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q + A+E F +M Q + PN + + VL ACA ++G LG +IH +V++
Sbjct: 318 -------QSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK- 369
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
GL + FV N+L+D+Y +CG ++ +
Sbjct: 370 ---------------IGLHSDVFVSNALMDVYAKCGRMENS 395
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 29/163 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H LK+ DL N L++ Y K +L A F ++ +++ +S+ ++ GYA
Sbjct: 57 GKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E F + A+E F R+ + + N + +L +LG IH
Sbjct: 116 ------ESVRFLE------AIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHA 163
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ + G + +FV +LID Y CG +
Sbjct: 164 CIFK----------------LGHESNAFVGTALIDAYSVCGRV 190
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 168/587 (28%), Positives = 247/587 (42%), Gaps = 182/587 (31%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE +R++ SW +M+ ++ + E + F L++ EGV EL
Sbjct: 169 ALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGV-----ELDG--------- 214
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
++I AC S+L L GKEIH + L+ +D
Sbjct: 215 --VTIASVLPAC---------------------------SHLERLDVGKEIHAYVLRNND 245
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L + V ++L+D Y CR ++ F I + + WNAM++GYA G E+
Sbjct: 246 LIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK------ 299
Query: 240 YGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQ-VKGFKLGKEIHGYVLRHHIQLST 297
AL F MI+ + PNT +++ V+ AC + GKEIH Y +R+ +
Sbjct: 300 ------ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353
Query: 298 GVGIALISI---------------QGLGTGSFVWNSLI-------------DMY------ 323
VG AL+ + + WN LI +++
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAE 413
Query: 324 -GRCGAIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
GR G + NE G F MK ++ +EP + Y C+VDLL RA
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRA 473
Query: 365 GQFDDTLNFMKKMPFE-------PSSAEPC----NPDIAEHAARHLFELEP--------- 404
GQ ++ + MP E S C N ++ E AA++L LEP
Sbjct: 474 GQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLL 533
Query: 405 ----LSSG------------------------------KVHSFIAGDTSHSLVHKISEKL 430
S+G +VH F+AGD SH ++ L
Sbjct: 534 SNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFL 593
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
L +++K GY+ K CGHSEKLA+AFG+++T PG+ +RV KNL
Sbjct: 594 ETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNL 653
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH+ TK++SK EREII+ D RFHHF +G CSCGDYW
Sbjct: 654 RVCNDCHAATKFISKI----MEREIIVRDVRRFHHFKEGTCSCGDYW 696
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 79/311 (25%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
P R+ SW + + E ++ + + G V KA S L+D + G+
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112
Query: 116 DVYDYMISIKF-EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++ + + + V +++M+ KCG + +K F+N
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIG-------DKTFTN-------------- 151
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
N+LM YAK + + F + +VSWN M I
Sbjct: 152 -------------NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTM------------I 186
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+ F+Q AL FF M+ ++ + ++++ VL AC+ ++ +GKEIH YVLR++
Sbjct: 187 SSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN-- 244
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
L SFV ++L+DMY C Q G R F+ + + +E +
Sbjct: 245 -------------DLIENSFVGSALVDMY--CNCRQVESGRRVFDHI-----LGRRIELW 284
Query: 355 CCMVDLLARAG 365
M+ AR G
Sbjct: 285 NAMISGYARNG 295
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 31/170 (18%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-CAFLG------------------MFE 63
VT A + C L L++G ++HA+++ + +F+G +F+
Sbjct: 215 VTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFD 274
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID-----------EGVYKAC-SELKDH 111
+ R + W +M+ Y G E+ + LF +I V AC L
Sbjct: 275 HILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAI 334
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
GK+++ Y I + V ++DM+ KCG + ++ F E N+
Sbjct: 335 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNV 384
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/635 (25%), Positives = 266/635 (41%), Gaps = 189/635 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDH 111
F + N+ SW +++ ++ + +++ LF ++ EG KAC L
Sbjct: 70 FNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF 129
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL------- 164
+ K + I ++ EG+ V +++++ + G +E A FEE N +
Sbjct: 130 QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGH 189
Query: 165 -----------------------------------------KHGKEIHPHHLKKDDLESD 183
K GK H +KK+ ++S+
Sbjct: 190 LNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSN 249
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ SL+D Y KC +L A F +I + +V W+A++AG+A G E
Sbjct: 250 FFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALE---------- 299
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
++ F +M+ + PN+++ + ++ AC+ + K G+ +HGY++R+ ++L +
Sbjct: 300 --SISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSF 357
Query: 304 ISI---------------QGLGTGSFVWNSLID---MYGRCGAI---------------- 329
I + Q F W+++I+ M+G C
Sbjct: 358 IDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNS 417
Query: 330 --------------QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+ EGW +F+ M ++Y + P E Y CMVDLL RAG+ D+ L+F+
Sbjct: 418 VTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFIN 477
Query: 376 KMPFEPSSAE------PCN----PDIAEHAARHLFELEPLSSGK--VHSFIAGDTS---- 419
MP EP ++ C ++AE A+ L LE SG + S I D
Sbjct: 478 NMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEM 537
Query: 420 -------------HSLVH----KISEKLMRLYSE--------------------IKKIGY 442
H +V +I EKL SE ++++GY
Sbjct: 538 VKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGY 597
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ K+ CGHSEKLA+ FGL+++ G P+R+ KN+R+CGDCH+ +K+
Sbjct: 598 VPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKF 657
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S + R+IIM D RFHH DG CSCGDYW
Sbjct: 658 ISLITR----RKIIMRDVKRFHHVQDGVCSCGDYW 688
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 21/111 (18%)
Query: 3 IKNVTLLLQSM-DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----C 56
++++++ Q + D P+ +VT+A I C L +L+ G VH ++I GVEL
Sbjct: 298 LESISMFRQMLADSVTPN--SVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYT 355
Query: 57 AFLGMFEK-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFY 94
+F+ M+ K +PE+NVFSW++M+ + + G E +NLFY
Sbjct: 356 SFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFY 406
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 102/250 (40%), Gaps = 26/250 (10%)
Query: 56 CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK-------- 103
C FL +FE++ R+V W++++ + G E +++F ++ + V
Sbjct: 263 CGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASI 322
Query: 104 --ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF 158
ACS L + G+ V+ YMI E + +DM+ KCG + A F EK+
Sbjct: 323 VLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNV 382
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ S + +G +H + +L ++ N L + L C S ++ +
Sbjct: 383 FSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSA--CSHSGRIEEGWSHF 440
Query: 219 NAMLAGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+M Y + E + + G + AL F + M +P + +L AC
Sbjct: 441 KSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNM---PTEPGASAWGALLGACRI 497
Query: 275 VKGFKLGKEI 284
+ +L +E+
Sbjct: 498 HRRAELAEEV 507
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 166/611 (27%), Positives = 263/611 (43%), Gaps = 177/611 (28%)
Query: 59 LGMFEKMPERNVFSWTSMMG-------MYNVLGYYEEIV-----NLFYLLIDEGVYKACS 106
L +F +P NVF W ++ ++ + +Y +V N F ++KACS
Sbjct: 87 LKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTY---PTLFKACS 143
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+ + G+ ++ +++ + +K + M+ GR+E A F
Sbjct: 144 VAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSG---------- 193
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
ESD++ N+++D Y KC L+ A F+++ K++ SWN M+ G A
Sbjct: 194 --------------ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239
Query: 227 LGGF-------------REEIT------GFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
GG R+EI+ G+ G + ALE F +M + + +P LS
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTG----------- 312
VLAAC+ + G+ +H Y+ R+ I+L +G AL+ + L G
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359
Query: 313 SFVWNSLID---MYGRC------------GAIQKN------------------EGWRYFE 339
F WN++I ++GR G ++ N +G R F+
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
M++ Y ++P +E Y CMVDLL R+G F + + + MP +P++A C N
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479
Query: 390 DIAEHAARHLFELEPLSSGK---------------------------------------- 409
D+AE + L ELEP +SG+
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDL 539
Query: 410 ---VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
VH F GD SH + +I KL + ++ G+ K HS
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI+T PG + ++KNLR+C DCHS TK +S+ +REII+ D R+HHF
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQI----FDREIIVRDRVRYHHF 655
Query: 513 VDGACSCGDYW 523
+G CSC D+W
Sbjct: 656 KNGTCSCKDFW 666
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 102/237 (43%), Gaps = 37/237 (15%)
Query: 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKH 214
D +++ L++ ++H L+ + D V+ +L+ YA + A FS I +
Sbjct: 39 DSKSITSLQYLTQLHALVLRSGHFQ-DHYVSGALLKCYANPHFSNFDFALKVFSSIPNPN 97
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ WN + I G + A+ F+ RM+ D +PN + + AC+
Sbjct: 98 VFIWNIV------------IKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSV 144
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGV---GIALISIQGL----------GTGSFV-WNSLI 320
+ + G++IHG+V++H I + GI + + G G V WN++I
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMI 204
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
D Y +CG ++ +G + +M K + + M++ LA+ G D +M
Sbjct: 205 DGYLKCGVLEAAKGL-FAQMPVKN------IGSWNVMINGLAKGGNLGDARKLFDEM 254
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/675 (24%), Positives = 275/675 (40%), Gaps = 213/675 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G++ FL +F+ +P VF W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98
Query: 85 YYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++++ + ++ + V KAC L ++G+ V+ + + FE + V+
Sbjct: 99 HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQN 158
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KC R+ A FE
Sbjct: 159 GLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDV 218
Query: 156 -----------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVA 203
F+ L L+ G+ IH +K + E DLL+ SL YAKC + A
Sbjct: 219 KPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLI--SLNTMYAKCGQVATA 276
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K+K +L+ WNAM++GYA GF ++ A++ F MI D++P+TI
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGFAKD------------AIDLFHEMINKDVRPDTI 324
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QG 308
S++ ++ACAQV + + + YV R + + ALI + +
Sbjct: 325 SITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRT 384
Query: 309 LGTGSFVWNSLIDMYGRCG----------AIQKN-----------------------EGW 335
L VW+++I YG G A++++ EGW
Sbjct: 385 LDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGW 444
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP 389
+F M ++ + P + Y C++DLL RAG D +K MP +P C
Sbjct: 445 WFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503
Query: 390 ----DIAEHAARHLFELEPLSSG------------------------------------- 408
++ ++AA+ LF ++P ++G
Sbjct: 504 HRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-------------- 448
++ F GD SH +I ++ + S +K+ G++ A
Sbjct: 564 WVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
C HSE++ +A+GLIST G+ LR+ KNLR C +CH+ TK +SK REI++ D R
Sbjct: 624 CSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVG----REIVVRDTNR 679
Query: 509 FHHFVDGACSCGDYW 523
FHHF DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 176/657 (26%), Positives = 274/657 (41%), Gaps = 184/657 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD +T I C + L+ G QVH + G+ F+G
Sbjct: 232 PD--AITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEAN 289
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE + +++V SW +M+ Y+ +G ++ ++LF ++ +E + DV
Sbjct: 290 KVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDI------------KLDVIT 337
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------SLLKHGKEIHP 172
+ I LD+F +M++ E ++L L +GK+ H
Sbjct: 338 WSAVIAGYAQKGHGFEALDVF---RQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHA 394
Query: 173 HHLKK------DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAG 224
+ +K +D E DLLV N L+D YAKC+ +VA F I K K++V+W M+ G
Sbjct: 395 YVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGG 454
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGK 282
YA Q+G+ AL+ F+++ + T ++PN +LS L ACA++ +LG+
Sbjct: 455 YA------------QHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502
Query: 283 EIHGYVLRHHIQLST-GVGIALISIQGLG---------------TGSFVWNSLIDMYGRC 326
++H Y LR+ + VG LI + W SL+ YG
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMH 562
Query: 327 G----------AIQK-----------------------NEGWRYFEMMKKEYNMEPAMEQ 353
G +QK ++G YF M K + + P E
Sbjct: 563 GRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEH 622
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELE 403
Y CMVDLL RAG+ ++ + +K M EP+ S N ++ E+AA L EL
Sbjct: 623 YACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELG 682
Query: 404 PLSSGK-------------------------------------------VHSFIAGDTSH 420
+ G +F GD SH
Sbjct: 683 AENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSH 742
Query: 421 SLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSP 466
+I L+ L IK +GY+ + HSEKLA+A+G+++T+P
Sbjct: 743 PESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAP 802
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+R+ KNLR+CGDCHS Y+S + EI++ D+ RFHHF G+CSC YW
Sbjct: 803 GQPIRIHKNLRICGDCHSALTYISMI----IDHEIVLRDSSRFHHFKKGSCSCRSYW 855
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 105/223 (47%), Gaps = 42/223 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI---KQKHLVSWNA 220
L+HG +H + + L S++ + NS++ Y +C L AH F ++ K + +VSWN+
Sbjct: 143 LRHGASVHAI-VCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNS 201
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRM---IQTDMQPNTISLSGVLAACAQVKG 277
+LA Y GG TAL RM ++P+ I+L +L ACA V
Sbjct: 202 ILAAYVQGG------------QSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFA 249
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
+ GK++HG+ +R+ GL FV N+L+ MY +C + NE +
Sbjct: 250 LQHGKQVHGFSVRN----------------GLVDDVFVGNALVSMYAKCSKM--NEANKV 291
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
FE +KK+ + + MV ++ G FD L+ K M E
Sbjct: 292 FEGIKKK-----DVVSWNAMVTGYSQIGSFDSALSLFKMMQEE 329
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 16/86 (18%)
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ L F+ +M + P+ + VL AC ++ + G +H A+
Sbjct: 109 DDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVH----------------AI 152
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ GLG+ F+ NS++ MYGRCGA+
Sbjct: 153 VCANGLGSNVFICNSIVAMYGRCGAL 178
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 176/676 (26%), Positives = 274/676 (40%), Gaps = 195/676 (28%)
Query: 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79
EC + + + N + + A+ GVE + +F+++ E +V SW SM+
Sbjct: 488 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVE--SAHNLFDELSEPDVVSWNSMING 545
Query: 80 YNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGN 129
V G+ + +F ++ GV A + + + +G+ ++ + + F
Sbjct: 546 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE 605
Query: 130 ACVKRPVLDMFIKCGRMEMAS-------------------------------GEFEEKDF 158
+LDM+ KCG + A+ G F+E
Sbjct: 606 VVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQS 665
Query: 159 SNL-----------------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ S L G+++H + +K + + S+L V N+L++ YAKC ++
Sbjct: 666 KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIK-NGMGSNLPVTNALINMYAKCGSVE 724
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A FSKI K +VSWN M+ GY+ E ALE F M Q +P+
Sbjct: 725 EARLVFSKIPVKDIVSWNTMIGGYSQNSLPNE------------ALELFLDM-QKQFKPD 771
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV------ 315
I+++ VL ACA + G+EIHG++LR V AL+ + G V
Sbjct: 772 DITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYA-KCGLLVLAQLLF 830
Query: 316 ----------WNSLIDMYG---------------RCGAIQK------------------N 332
W +I YG R I+ N
Sbjct: 831 DMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLN 890
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EP 386
EGW++F M+ E +EP +E Y C+VDLLAR G F++ MP +P +
Sbjct: 891 EGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950
Query: 387 C----NPDIAEHAARHLFELEPLSS----------------------------------- 407
C + +AE A H+FELEP ++
Sbjct: 951 CRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNP 1010
Query: 408 --------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
GK + F+AG++ H +I L +L +++ Y K
Sbjct: 1011 GCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKE 1070
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
+ CGHSEK A+AFG+++ PG +RV KN R+CGDCH K++SK K REI++ D
Sbjct: 1071 MIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTK----REIVLRD 1126
Query: 506 NYRFHHFVDGACSCGD 521
+ RFHHF DG CSC D
Sbjct: 1127 SNRFHHFKDGLCSCRD 1142
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 154/386 (39%), Gaps = 102/386 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+Y + Q C + +LE G +VH+ +I G+ + LG +F+K+
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
VF W +M Y +G + E V+LF + GV C Y +
Sbjct: 431 MNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNC------------YTF----- 473
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
CV +KC F+ L +K K +H + LK S+
Sbjct: 474 ----TCV--------LKC--------------FAALGKVKECKRVHGYVLKLG-FGSNTA 506
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V NSL+ Y K ++ AH F ++ + +VSWN+M+ G + GF G+G
Sbjct: 507 VVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS---------GNG-- 555
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
LE F +M+ ++ + +L VL A A + LG+ +HG+ ++ A S
Sbjct: 556 -LEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVK-----------ACFS 603
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+ + + N+L+DMY +CG + N F M + + + + R G
Sbjct: 604 EEVVFS-----NTLLDMYSKCGNL--NGATEVFVKMG-----DTTIVSWTSTIAAYVREG 651
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDI 391
+ D + +M ++ PDI
Sbjct: 652 LYSDAIGLFDEM-----QSKGVRPDI 672
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI------------------ 49
L L PD+ +T A + C L L+ G ++H H++
Sbjct: 760 LFLDMQKQFKPDD--ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMY 817
Query: 50 -VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
CG+ + A L +F+ +P++++ SWT M+ Y + G+ E ++ F
Sbjct: 818 AKCGLLVLAQL-LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTF 861
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 182/653 (27%), Positives = 273/653 (41%), Gaps = 173/653 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----VELCAFLGM-------------FEKMPERN 69
+ + C L+ L+ G Q+H +V G V L + L M F+K+P+
Sbjct: 80 VIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPG 139
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
V + ++++ + G +E LFY D GV + ++ MIS F +
Sbjct: 140 VVTSSALISRFARKGRVKETKELFYQTRDLGV----------ELNLVSWNGMIS-GFNRS 188
Query: 130 ACVKRPVL---DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
VL +M ++ + + S +L + G +IH + +K+ L D V
Sbjct: 189 GSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG-LGPDKFV 247
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------------- 233
++L+D Y KC F+++ + + + NA++ G + G +
Sbjct: 248 VSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDL 307
Query: 234 --------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I +Q G ALE F M ++PN++++ +L AC + GK H
Sbjct: 308 NVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAH 367
Query: 286 GYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYG------ 324
+ LR+ I VG ALI + + + V WNSL+ Y
Sbjct: 368 CFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTF 427
Query: 325 ----------RCGAIQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCM 357
RCG + EGW YF+ M + + +E ME Y CM
Sbjct: 428 EAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCM 487
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSS 407
V LL R+G+ ++ +K+MPFEP S C D+ E AA+ +FELEP +
Sbjct: 488 VTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNP 547
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G KVH +AGD+SH +
Sbjct: 548 GNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMP 607
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I EKL +L E+KK GY+ K CGHSEKLA+ GL++T PG PL
Sbjct: 608 QIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPL 667
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+VIKNLR+C DCH+ K++S EK REI + D RFH F G CSCGDYW
Sbjct: 668 QVIKNLRICRDCHAVIKFISDFEK----REIFVRDTNRFHQFKGGVCSCGDYW 716
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 168/633 (26%), Positives = 263/633 (41%), Gaps = 165/633 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVE------------LCAFLGMFEKMPERNVF---- 71
+ + C + +L G VH ++ G++ LGM K+ NVF
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMP 170
Query: 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
TS G +V E + F + V++ KDV Y I +
Sbjct: 171 QRTSNSGDEDVKA--ETCIMPFGIDSVRRVFEVMPR-------KDVVSYNTIIAGYAQSG 221
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+ L M + G ++ F FS + GKEIH + ++K ++SD+ +
Sbjct: 222 MYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG-IDSDVYIG 280
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+SL+D YAK ++ + FS++ + +SWN+++AGY Q G AL
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY------------VQNGRYNEAL 328
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
F +M+ ++P ++ S V+ ACA + LGK++HGYVLR + + AL+ +
Sbjct: 329 RLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY 388
Query: 307 -------------------------------------------------QGLGTGSFVWN 317
QG+ +
Sbjct: 389 SKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFV 448
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+++ G + +E W YF M K Y + +E Y + DLL RAG+ ++ NF+ KM
Sbjct: 449 AVLTACSHVGLV--DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
EP+ + C N ++AE A +F ++ + G
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMA 566
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K H F++GD SH + KI+E L + +++K GY+
Sbjct: 567 KLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVA 626
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
KR GHSE+LA+AFG+I+T PG+ +RV KN+R+C DCH K++S
Sbjct: 627 DTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFIS 686
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ DN RFHHF G CSCGDYW
Sbjct: 687 KIT----EREIIVRDNSRFHHFNRGNCSCGDYW 715
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/659 (25%), Positives = 271/659 (41%), Gaps = 187/659 (28%)
Query: 13 MDLTNPDEC---TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
+D+ + +C T+ + + ++++L LG +H + V F+
Sbjct: 119 LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFS 178
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
+F + E++V SW SM+ + G ++ + LF + E GV
Sbjct: 179 CGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
AC+++++ G+ V Y+ + N + +LDM+ KCG +E A F+ +
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME---- 294
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E D + +++D YA + A + + QK +V+WNA+
Sbjct: 295 -------------------EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++ Y G E + F +Q +M+ N I+L L+ACAQV +LG
Sbjct: 336 ISAYEQNG-----------KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MY 323
+ IH Y+ +H I+++ V ALI + FVW+++I M+
Sbjct: 385 RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 324 GRCGA-------------IQKN------------------EGWRYFEMMKKEYNMEPAME 352
G CG ++ N E F M+ Y + P +
Sbjct: 445 G-CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFEL 402
Y C+VD+L R+G + + F++ MP PS++ N ++AE A L EL
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
EP + G +H F++GD +
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 623
Query: 420 HSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFGLIST 464
H + K+ KL + ++K GY MK HSEKLA+ +GLIST
Sbjct: 624 HPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLIST 683
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RVIKNLR+CGDCHS K +S+ +REII+ D YRFHHF +G CSC D+W
Sbjct: 684 EAPKVIRVIKNLRVCGDCHSVAKLISQL----YDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 43/226 (19%)
Query: 164 LKHGKEIHPHHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
L+ K+ H H ++ D + L + + +A Y + F +I + + +WN
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKV---FDEIPKPNSFAWN 99
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGF 278
++ YA G D ++ F M+ ++ PN + ++ A A+V
Sbjct: 100 TLIRAYASGP------------DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
LG+ +HG ++ +G+ FV NSLI Y CG + + + F
Sbjct: 148 SLGQSLHGMAVK----------------SAVGSDVFVANSLIHCYFSCGDL--DSACKVF 189
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+K E + + M++ + G D L KKM E A
Sbjct: 190 TTIK-----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 230
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 167/683 (24%), Positives = 280/683 (40%), Gaps = 198/683 (28%)
Query: 35 LNNLELGIQVHAHLI------VCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYY 86
L+ LE Q+HAH+I + L F + N + S+T N L Y
Sbjct: 53 LSTLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVY 112
Query: 87 EEIVNLFYLL---IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
++ + + + + V KAC ++ ++GK+++ +++ + + V ++ M+ +C
Sbjct: 113 AQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC 172
Query: 144 GRMEMASGEFE---EKD------------------------------------------- 157
+E A F+ E+D
Sbjct: 173 ACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 232
Query: 158 --FSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
F++ + ++ GK +H + ++ + E + +L+D YAKC +L +A F+ + QK
Sbjct: 233 NLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKT 292
Query: 215 LVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQ 255
+VSW AM+AG EE ++ + Q + A F +M
Sbjct: 293 VVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT 352
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------- 305
+ ++P +++ +L+ CA LGK +H Y+ + +++ + AL+
Sbjct: 353 SGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINA 412
Query: 306 -----IQGLGTGSFVWNSLIDMYGRCG---------------AIQKN------------- 332
I+ + +WN++I + G ++ N
Sbjct: 413 AGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 472
Query: 333 -----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS---- 383
EG + FE M + + P +E Y CMVDLL RAG D+ +K MP +P++
Sbjct: 473 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWG 532
Query: 384 --AEPC----NPDIAEHAARHLFELEPLS------------------------------- 406
C NP + E AA L E+EP +
Sbjct: 533 ALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVG 592
Query: 407 ------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----------- 443
+G VH F+ GD SH + +I+E L + ++ + GY+
Sbjct: 593 MKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNID 652
Query: 444 ---KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
K HSEKLA+AFGLIST+P +P+R++KNLR+C DCH+ TK +SK R
Sbjct: 653 EEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYG----RV 708
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
II+ D RFHHF +G CSCGDYW
Sbjct: 709 IIVRDRNRFHHFREGYCSCGDYW 731
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 179/715 (25%), Positives = 283/715 (39%), Gaps = 214/715 (29%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI------------- 49
+K L + M + +T+ ++ C L+LG + HA +I
Sbjct: 143 VKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTA 202
Query: 50 -----VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---- 100
V G + +F+ + +R+V ++ M+G Y G E+ LFY + EG
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPN 262
Query: 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+ CS + GK V+ ++ + V ++ M++ CG +E A F+
Sbjct: 263 RISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFD 322
Query: 155 E---KDFSNLSLLKHG-------------------------------------------- 167
+ +D + +++ G
Sbjct: 323 KMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSL 382
Query: 168 -KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+EIH ++ +DLLV+ +L+ YAKC +K A F + ++ +VSW+AM+ Y
Sbjct: 383 AREIHSQVVRAG-FGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAY- 440
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G GE A E F M + +++P+ ++ +L AC + LG EI+
Sbjct: 441 -----------VENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYT 489
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYG------ 324
++ + VG ALI++ + GS WN +I Y
Sbjct: 490 QAIKADLVSHIPVGNALINMN-VKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAR 548
Query: 325 -----------------------------RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355
R G ++ EG R+F + + P ME Y
Sbjct: 549 EALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVE--EGRRFFSYLLDGRGIVPTMELYG 606
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG+ D+ + +MP +P+S+ C N D+AE AA EP
Sbjct: 607 CMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPY 666
Query: 406 SS-------------------------------------------GKVHSFIAGDTSHSL 422
GK+H+F+ D SH
Sbjct: 667 DGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQ 726
Query: 423 VHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGS 468
+I +L RL + IK+ GY+ K HSEKLA+A+G++S G+
Sbjct: 727 AGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGA 786
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R+ KNLR+CGDCHS +K++SK REII D RFHHF +G CSCGDYW
Sbjct: 787 PIRIFKNLRVCGDCHSASKFISKVTG----REIIARDASRFHHFKNGVCSCGDYW 837
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 99/437 (22%), Positives = 170/437 (38%), Gaps = 115/437 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
TY +FQRC L + LG QV H+I G +L + F+ +
Sbjct: 63 TYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSV 122
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+ V +W +++ Y LG+ +E LF ++DE V ACS ++GK
Sbjct: 123 ENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGK 182
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSL--------- 163
+ + +I + F + + ++ M++K G M+ A F+ ++D S ++
Sbjct: 183 EFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSG 242
Query: 164 ------------------------------------LKHGKEIHPHHLKKDDLESDLLVN 187
L GK +H + L D+ V
Sbjct: 243 DGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNT-GLVDDVRVA 301
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+ Y C ++ A F K+K + +VSW M+ GYA + + E A
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYA------------ENSNIEDAF 349
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F+ M + +QP+ I+ ++ ACA L +EIH V+R
Sbjct: 350 GLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR----------------A 393
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG-- 365
G GT V +L+ MY +CGAI+ + + F+ M + + + M+ G
Sbjct: 394 GFGTDLLVDTALVHMYAKCGAIK--DARQVFDAMSRR-----DVVSWSAMIGAYVENGCG 446
Query: 366 -QFDDTLNFMKKMPFEP 381
+ +T + MK+ EP
Sbjct: 447 EEAFETFHLMKRNNVEP 463
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 191/729 (26%), Positives = 294/729 (40%), Gaps = 229/729 (31%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKL---NNLELGIQVHAHLIVCG----------VELC 56
++M + N + + T + C L + L LG Q+H + + G + +
Sbjct: 182 FRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMAMY 241
Query: 57 AFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------- 101
A LG +FE +R++ SW +M+ ++ + E + F L++ EGV
Sbjct: 242 AKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIA 301
Query: 102 --YKACSELKDHRVGKDVYDYMI-SIKFEGNACVKRPVLDMFIKCGRME----------- 147
ACS L+ VGK+++ Y++ + N+ V ++DM+ C ++E
Sbjct: 302 SVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILG 361
Query: 148 --------MASG----EFEEKDF-------------SNLSLL-------------KHGKE 169
M SG +EK N + + + +
Sbjct: 362 RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKES 421
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
IH + +K + D V N+LMD Y++ + ++ F ++ + VSWN M+ GY L G
Sbjct: 422 IHGYAVKLG-FKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSG 480
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDM--------------QPNTISLSGVLAACAQV 275
+Y + L RM T +PN I+L VL CA +
Sbjct: 481 ---------RYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAAL 531
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI 320
GKEIH Y +R+ + VG AL+ + + WN LI
Sbjct: 532 AAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLI 591
Query: 321 -------------DMY-------GRCGAIQKNE------------------GWRYFEMMK 342
+++ GR G + NE G F MK
Sbjct: 592 MACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMK 651
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE-------PSSAEPC----NPDI 391
++ +EP + Y C+VDLL RAGQ ++ + MP E S C N ++
Sbjct: 652 HDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVEL 711
Query: 392 AEHAARHLFELEP-------------LSSG------------------------------ 408
E AA++L LEP S+G
Sbjct: 712 GEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRD 771
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
+VH F+AGD SH ++ L L +++K GY+ K CGHSEK
Sbjct: 772 EVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEK 831
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+AFG+++T PG+ +RV KNLR+C DCH+ TK++SK EREII+ D RFHHF +
Sbjct: 832 LAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKI----MEREIIVRDVRRFHHFKE 887
Query: 515 GACSCGDYW 523
G CSCGDYW
Sbjct: 888 GTCSCGDYW 896
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 125/295 (42%), Gaps = 43/295 (14%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K S L LK G++IH +K S + V N+L++ Y KC + F +I +
Sbjct: 100 KAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQ 159
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN+ +A ++ E ALE F M +M+ ++ +L V AC+ +
Sbjct: 160 VSWNSFIA------------ALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNL 207
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
G +LGK++HGY LR Q +F N+L+ MY + G + +
Sbjct: 208 GVMHGLRLGKQLHGYSLRVGDQ-----------------KTFTNNALMAMYAKLGRVDDS 250
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ FE ++ M + M+ +++ +F + L F + M E +
Sbjct: 251 KA--LFESF-----VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASV 303
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
A H LE L GK +H+++ + + L+ +Y +++ +R+
Sbjct: 304 LPACSH---LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRV 355
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/617 (25%), Positives = 260/617 (42%), Gaps = 182/617 (29%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
NPD T+ + + C L+NL +G+QVH ++ G++ F+G
Sbjct: 134 NPDH--YTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREA 191
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL------FYLLIDEGVYKACS------ 106
+ ++MP R+V SW SM+ Y G +++ + + L D G + S
Sbjct: 192 RKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYT 251
Query: 107 ---------ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
+ + K++ + + I N + + +F++ M
Sbjct: 252 SLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311
Query: 158 F----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
+LS L G+ +H +++K +L +LL+ N+L+D YAKC L+ A F K++ +
Sbjct: 312 LLPACGDLSALFLGRRLH-KYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLR 370
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+VSW +M++ Y + G G A+ F++M+ + P++I+ VL+AC+
Sbjct: 371 DVVSWTSMMSAYG------------RSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACS 418
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
TG L+D +
Sbjct: 419 H------------------------------------TG------LLD-----------Q 425
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC 387
G YF MM ++Y + P +E + CMVDL RAG+ ++ +F+K+MP EP+ C
Sbjct: 426 GRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSAC 485
Query: 388 NP----DIAEHAARHLFELEPLSSG----------------------------------- 408
DI AA LF+L P SG
Sbjct: 486 RVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPG 545
Query: 409 --------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC----------- 449
+VH+F+AGD H I +L L ++K++GY+ + +
Sbjct: 546 ISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKEC 605
Query: 450 ---GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
HSEKLA+ F +++T G+P+R+ KNLR+CGDCH K +SK R II+ D
Sbjct: 606 HLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIV----SRNIIVRDC 661
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF +G CSCGDYW
Sbjct: 662 NRFHHFSNGICSCGDYW 678
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 65/344 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++ E+NV + M+ Y Y E +++F +++ V KACS L +
Sbjct: 93 IFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDN 152
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
RVG V+D ++ + + N + ++ M+ KCG + A ++ + ++
Sbjct: 153 LRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAG 212
Query: 162 --------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
L+ KE+ +L D + + + S + Y ++ H F ++ +K
Sbjct: 213 YAQSGQFDDALEICKEMDSLNLNHD---AGTMASLSPVVCYTSLENVQYIHNMFERMTKK 269
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+L+SWN M+A Y E A+ F +M + M+P+ ++++ +L AC
Sbjct: 270 NLISWNVMIAIYVNNSMPNE------------AVSLFLQMEECGMKPDAVTIASLLPACG 317
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ LG+ +H Y+ + +++ + + N+L+DMY +CG ++ E
Sbjct: 318 DLSALFLGRRLHKYIEKGNLRPNL----------------LLENALLDMYAKCGCLE--E 359
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
F+ M+ + + M+ R+GQ D + KM
Sbjct: 360 ARDVFDKMRLR-----DVVSWTSMMSAYGRSGQGYDAVALFAKM 398
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 73/179 (40%), Gaps = 42/179 (23%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHL---------------- 48
V+L LQ + PD VT A + C L+ L LG ++H ++
Sbjct: 291 VSLFLQMEECGMKPD--AVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALL 348
Query: 49 ---IVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----- 100
CG L +F+KM R+V SWTSMM Y G + V LF ++D G
Sbjct: 349 DMYAKCGC-LEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407
Query: 101 -----VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G+ + Y I + E AC ++D+F + G +E A
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFAC----MVDLFGRAGEVEEA 462
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 165/588 (28%), Positives = 239/588 (40%), Gaps = 202/588 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
YA + Q C ++ G Q+HA + + G + +F+++
Sbjct: 77 NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ N+F W ++ Y G YE V L+Y + D G+
Sbjct: 137 PKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGL------------------------ 172
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
V D F + F K + LS ++HG+EIH H+ + E D+
Sbjct: 173 ----------VPDNF---------TFPFVLKACAALSAIEHGREIH-EHVVQTGWEKDVF 212
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKH---LVSWNAMLAGYALGGFREEITGFTQYGD 242
V +L+D YAKC + A F KI + +VSWNAM ITG+ +G
Sbjct: 213 VGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAM------------ITGYAMHGH 260
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F M + +P+ I+ GVL+AC+ HG +L
Sbjct: 261 ATEALDLFEEMNRV-AKPDHITFVGVLSACS-----------HGGLLE------------ 296
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
EGW +FE M ++Y ++P ++ Y CMVDLL
Sbjct: 297 ------------------------------EGWMFFETMIRDYKIDPTVQHYTCMVDLLG 326
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
+G+ D+ N + +M P S C N ++ E A L ELEP +G
Sbjct: 327 HSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVI 386
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
KVH+F++GDTSH L +I +
Sbjct: 387 LSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSE 446
Query: 430 LMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIKN 475
L R+ +K+ GY + C HSE+LA+AFGLIST PG+ L + KN
Sbjct: 447 LERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKN 506
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH K++SK EREI + D R+HHF DG CSCGDYW
Sbjct: 507 LRICEDCHVAIKFISKIT----EREITVRDVNRYHHFKDGVCSCGDYW 550
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/611 (27%), Positives = 263/611 (43%), Gaps = 177/611 (28%)
Query: 59 LGMFEKMPERNVFSWTSMMG-------MYNVLGYYEEIV-----NLFYLLIDEGVYKACS 106
L +F +P NVF W ++ ++ + +Y +V N F ++KACS
Sbjct: 87 LKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTY---PTLFKACS 143
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+ + G+ ++ +++ + +K + M+ GR+E A F
Sbjct: 144 VAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSG---------- 193
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
ESD++ N+++D Y KC L+ A F+++ K++ SWN M+ G A
Sbjct: 194 --------------ESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA 239
Query: 227 LGGF-------------REEIT------GFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
GG R+EI+ G+ G + ALE F +M + + +P LS
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTG----------- 312
VLAAC+ + G+ +H Y+ R+ I+L +G AL+ + L G
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359
Query: 313 SFVWNSLID---MYGRC------------GAIQKN------------------EGWRYFE 339
F WN++I ++GR G ++ N +G R F+
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
M++ Y ++P +E Y CMVDLL R+G F + + + MP +P++A C N
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479
Query: 390 DIAEHAARHLFELEPLSSGK---------------------------------------- 409
D+AE + L ELEP +SG+
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDL 539
Query: 410 ---VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
VH F GD SH + +I KL + ++ G+ K HS
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI+T PG + ++KNLR+C DCHS TK +S+ +REII+ D R+HHF
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQI----FDREIIVRDRVRYHHF 655
Query: 513 VDGACSCGDYW 523
+G CSC D+W
Sbjct: 656 KNGTCSCKDFW 666
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 44/243 (18%)
Query: 153 FEEKDFSNLSLLK--HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFS 208
F+ K ++L L HG + H + D V+ +L+ YA + A FS
Sbjct: 38 FDSKSITSLQYLTQLHGLVLRSGHFQ------DHYVSGALLKCYANPHFSNFDFALKVFS 91
Query: 209 KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
I ++ WN + I G + A+ F+ RM+ D +PN + +
Sbjct: 92 SIPNPNVFIWNIV------------IKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTL 138
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGV---GIALISIQGL----------GTGSFV 315
AC+ + + G++IHG+V++H I + GI + + G G V
Sbjct: 139 FKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVV 198
Query: 316 -WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
WN++ID Y +CG ++ +G + +M K + + M++ LA+ G D
Sbjct: 199 CWNTMIDGYLKCGVLEAAKGL-FAQMPVKN------IGSWNVMINGLAKGGNLGDARKLF 251
Query: 375 KKM 377
+M
Sbjct: 252 DEM 254
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 163/611 (26%), Positives = 262/611 (42%), Gaps = 185/611 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ +++ I + +L GV+ A L F KMP +++ SW +++ + G +
Sbjct: 127 LFDKIPEPDSVSYNIMLVCYLRSYGVK--AALAFFNKMPVKDIASWNTLISGFAQNGQMQ 184
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
+ +LF S+ E N ++ +++ G +E
Sbjct: 185 KAFDLF-----------------------------SVMPEKNGVSWSAMISGYVEHGDLE 215
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
A E+ + N+ + ++V +++ Y K +++A F
Sbjct: 216 AA-----EELYKNVGM------------------KSVVVETAMLTGYMKFGKVELAERIF 252
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K+LV+WN+M+AGY + E L+ F MI++ ++PN +SLS
Sbjct: 253 QRMAVKNLVTWNSMIAGY------------VENCRAEDGLKVFKTMIESRVRPNPLSLSS 300
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------IQGLGTG 312
VL C+ + LG+++H V + + T +LIS ++
Sbjct: 301 VLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKD 360
Query: 313 SFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYFE 339
WN++I Y + GA +K + G +YF+
Sbjct: 361 VITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFK 420
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
MKKE+ +E Y C++DLL RAG+ D+ ++ +K+MPF P +A C N
Sbjct: 421 SMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNL 480
Query: 390 DIAEHAARHLFELEPLSS-------------------GKV-------------------- 410
D+AE AAR+L L+P S+ KV
Sbjct: 481 DLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEI 540
Query: 411 ----HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
H F + D H + I +KL L ++K GY+ K HS
Sbjct: 541 KSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHS 600
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGL+ T+PG+P+RV KNLR+CGDCH K++S EK REII+ D RFHHF
Sbjct: 601 EKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEK----REIIVRDTTRFHHF 656
Query: 513 VDGACSCGDYW 523
+G CSCGDYW
Sbjct: 657 RNGFCSCGDYW 667
>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 882
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 175/636 (27%), Positives = 261/636 (41%), Gaps = 190/636 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY---------LLIDEGVYKACSELKDH 111
+F++M R+ S+ +M+ Y L EE V +F LL V +AC L+D
Sbjct: 264 VFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDL 323
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA-------------------SGE 152
+ K +Y+YM+ F + V+ ++D++ KCG M A SG
Sbjct: 324 SLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Query: 153 FEEKDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+ D + L+ LK GK +H + +K + D
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG-ICID 442
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L V+N+L+D YAKC + + FS + V+WN + I+ ++GD
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTV------------ISACVRFGDF 490
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
T L+ ++M ++++ P+ + L CA + +LGKEIH +LR + +G AL
Sbjct: 491 ATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNAL 550
Query: 304 ISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK----------------- 331
I + L S V W +I YG G +K
Sbjct: 551 IEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDS 610
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+EG FE MK Y ++P +E Y C+VDLL+R+ + F++
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQ 670
Query: 376 KMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG----------------- 408
MP +P ++ C + AE +R + EL P G
Sbjct: 671 AMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
VH F +GD S I + L LYS + K GY
Sbjct: 731 VSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGY 790
Query: 443 M---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ KR CGHSE+LA+AFGL++T PG+PL+V+KNLR+CGDCH TK
Sbjct: 791 IPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTK 850
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK REI++ D RFH F DG CSC D W
Sbjct: 851 LISKIVG----REILVRDANRFHLFKDGTCSCKDRW 882
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 152/390 (38%), Gaps = 108/390 (27%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+PD+ T+ + + C L + E+G V+ ++ G E F+G
Sbjct: 102 VSPDK--YTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSE 107
+F++MP R++ SW S++ Y+ GYYEE + +++ L + V A
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------- 160
L + G+ ++ + + V ++ M++K R A F+E D +
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279
Query: 161 ------LSLLKHGKEIHPHHLKKDDLESDLL----------------------------- 185
L +++ + +L D + DLL
Sbjct: 280 ICGYLKLEMVEESVRMFLENL--DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAG 337
Query: 186 ------VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
V N L+D YAKC + A F+ ++ K VSWN++++GY Q
Sbjct: 338 FVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY------------IQ 385
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GD A++ F M+ + Q + I+ +++ ++ K GK +H ++ I + V
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSV 445
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
N+LIDMY +CG +
Sbjct: 446 S----------------NALIDMYAKCGEV 459
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 57/238 (23%)
Query: 54 ELCAFLGMFEKM-PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
E + L +F ++ P +NV+ W S++ ++ G + E + + +L++ +
Sbjct: 54 EPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFY------------GKLRESK 101
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
V D Y + IK AC + D EM +E+ +L G
Sbjct: 102 VSPDKYTFPSVIK----ACAG--LFDA-------EMGDLVYEQ-------ILDMG----- 136
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
ESDL V N+L+D Y++ L A F ++ + LVSWN++++GY+ G+ E
Sbjct: 137 -------FESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E ALE + + + + P++ ++S VL A + K G+ +HG+ L+
Sbjct: 190 E------------ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK 235
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
S F + S+ S L + IH + L+S + L+D Y+ R + F
Sbjct: 5 VSSPFISRALSSSSNLNELRRIHALVISLG-LDSSDFFSGKLIDKYSHFREPASSLSVFR 63
Query: 209 KIK-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K++ WN+++ ++ G E ALEF+ ++ ++ + P+ +
Sbjct: 64 RVSPAKNVYLWNSIIRAFSKNGLFPE------------ALEFYGKLRESKVSPDKYTFPS 111
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
V+ ACA + ++G ++ +L G + FV N+L+DMY R G
Sbjct: 112 VIKACAGLFDAEMGDLVYEQILD----------------MGFESDLFVGNALVDMYSRMG 155
Query: 328 AIQK 331
+ +
Sbjct: 156 LLTR 159
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/503 (29%), Positives = 229/503 (45%), Gaps = 140/503 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K S L L G++ H L E DL V+++L+D Y+KC L+ A F +I +++
Sbjct: 84 KSCSALLDLHSGRQAHQQALIFG-FEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNI 142
Query: 216 VSWNAMLAGYA-----------LGGFREE--------ITGFTQYGDGETALEFFSRMIQT 256
VSW +M+ GY G E I + Q G ++E F RM++
Sbjct: 143 VSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 202
Query: 257 -DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------GL 309
++ N ++LS VL ACA +LGK IH V++ ++ + VG ++I + +
Sbjct: 203 GEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 262
Query: 310 GTGSF---------VWNSLIDMYGRCG---------------AIQKN------------- 332
+F W++++ YG G ++ N
Sbjct: 263 ARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSH 322
Query: 333 -----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA--- 384
EGW +F+ M E+++EP +E Y CMVDLL RAG + + +K M P
Sbjct: 323 AGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWG 382
Query: 385 ---EPC----NPDIAEHAARHLFELEP--------LSS---------------------- 407
C N D+ E +AR LFEL+P LS+
Sbjct: 383 ALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSG 442
Query: 408 -------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC----- 449
G+VH F+ GD H KI E L +L +++++GY+ + +
Sbjct: 443 LVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVG 502
Query: 450 ---------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEKLA+AFG+++T PG+ + +IKNLR+CGDCH+ K++SK +RE
Sbjct: 503 HEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIV----DRE 558
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I++ D+ RFHHF DG CSCGDYW
Sbjct: 559 IVVRDSKRFHHFRDGLCSCGDYW 581
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FE 63
VT + + C + LG +H +I G+E F+G F+
Sbjct: 209 AVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFD 268
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+M E+NV SW++M+ Y + G+ +E + +FY + GV
Sbjct: 269 RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 306
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 163/600 (27%), Positives = 253/600 (42%), Gaps = 172/600 (28%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVY 102
EL A FEKMP+R++ SW SM+ Y+ GY E + +F +++E +
Sbjct: 225 ELAA--SQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASIL 282
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
AC+ L+ +GK ++ Y++ + E + V ++ M+ K G +E+A E SNL+
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
++ SL+D Y K +K A F+K++ + +V+W AM+
Sbjct: 343 IIAF---------------------TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMI 381
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
GY G + ALE F M+ +PN+ +L+ +L+ + + + GK
Sbjct: 382 VGYVQNGLWND------------ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-----------------VWNSLIDMYGR 325
+IH ++ + V ALI++ TG+ W S+I +
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYA-KTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488
Query: 326 CGAIQKNEGWRYFEMM----------------------------KKEYNM-------EPA 350
G E FE M +K YNM EP
Sbjct: 489 HGL--GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLF 400
+ Y CM+DL RAG + F++ MP EP S C N D+A+ AA L
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
++P +SG +VH+F D
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLIS 463
H +I + + ++ EIKK+G++ + HSEKLA+AFGL++
Sbjct: 667 VIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLN 726
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T + LR++KNLR+C DCHS K++SK REII+ D RFHHF DG+CSC DYW
Sbjct: 727 TPENTALRIMKNLRVCNDCHSAIKFISKLVG----REIIVRDATRFHHFKDGSCSCRDYW 782
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 178/410 (43%), Gaps = 65/410 (15%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+ +MP+ + SWT+++ YN G ++ + +F +I E V +C+ +
Sbjct: 98 LLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQT 157
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ ++ +++ + V +L+M+ KCG +A F+ N+S
Sbjct: 158 LDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTW------ 211
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N+L+ Y + ++A +F K+ + +VSWN+M++GY+ G+
Sbjct: 212 -----------------NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254
Query: 231 REEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
E AL FS+M+ + ++P+ +L+ +L+ACA ++ +GK+IH Y+L
Sbjct: 255 NLE------------ALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
R + S VG ALIS+ G + LI + R + + K N++P
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEI-ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361
Query: 350 AME-----------QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE--HAA 396
A E + M+ + G ++D L + M E EP + +A +
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE--GPEPNSYTLAAMLSVS 419
Query: 397 RHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
L LE + AG++S ++ L+ +Y++ I KR+
Sbjct: 420 SSLTILEHGKQIHASAIKAGESS---TPSVTNALIAMYAKTGNINVAKRV 466
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 47/233 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H +KK L + + N+LM FYAK L+ AH F ++ K SWN +++GYA
Sbjct: 29 GRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYA 87
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G E I G+ Q+G + A+ F++MI + P+ ++S
Sbjct: 88 KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSN 147
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VL++CA + +G++IH +V++ GLG+ V SL++MY +CG
Sbjct: 148 VLSSCAANQTLDIGRKIHSFVVK----------------LGLGSCVPVATSLLNMYAKCG 191
Query: 328 --AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
I K F+ M + + + ++ L ++GQF+ + +KMP
Sbjct: 192 DPVIAK----VVFDRMTVK-----NISTWNALISLYMQSGQFELAASQFEKMP 235
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 171/691 (24%), Positives = 284/691 (41%), Gaps = 214/691 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERN 69
+ + C +++ +LG ++H ++ G++ F+G +F+KM ER+
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLF----YLLIDEGVYKACS------ELKDHRVGKDVYD 119
V SW++M+ + ++ + L ++ + S + + R+GK ++
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219
Query: 120 YMISIKFEGNACVKRP----VLDMFIKCGRMEMASGEF---------------------- 153
Y+I + N + P +LDM+ KCG + +A F
Sbjct: 220 YVI--RNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSN 277
Query: 154 -------------EEKDFSN----LSL---------LKHGKEIHPHHLKKDDLESDLLVN 187
EE F N LSL L+ GK++H + L+ + L +
Sbjct: 278 RLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILR-NGFSVSLALA 336
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D Y KC ++ A F + + ++ W AML+ YA Q + A
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYA------------QANCIDQAF 384
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS-- 305
F +M + ++P +++ +L+ CA LGK +H Y+ + +++ + AL+
Sbjct: 385 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMY 444
Query: 306 -------------IQGLGTGSFVWNSLIDMYGRCG---------------AIQKN----- 332
I+ + +WN++I + G ++ N
Sbjct: 445 AKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFI 504
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG + FE M + + P +E Y CMVDLL RAG D+ +K MP
Sbjct: 505 GLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPI 564
Query: 380 EPSS------AEPC----NPDIAEHAARHLFELEPLS----------------------- 406
+P++ C NP + E AA L E+EP +
Sbjct: 565 KPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGV 624
Query: 407 --------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+G VH F+ GD SH + +I+E L + ++ + GY+
Sbjct: 625 RKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDT 684
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K HSEKLA+AFGLIST+P +P+R++KNLR+C DCH+ TK +SK
Sbjct: 685 STVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKI 744
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R II+ D RFHHF +G CSCGDYW
Sbjct: 745 YG----RVIIVRDRNRFHHFREGYCSCGDYW 771
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 257/643 (39%), Gaps = 171/643 (26%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMF 62
++N + + M + TY I + C +L +LELG Q+H+ +I +L
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQL------- 506
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
N + + ++ MY LG + ++ GKDV +
Sbjct: 507 ------NAYVCSVLIDMYAKLGKLDTAWDILIRF----------------AGKDVVSWTT 544
Query: 123 SI------KFEGNACVK-RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
I F+ A R +LD I+ + + + + L LK G++IH
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV---SACAGLQALKEGQQIHAQAC 601
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
SDL N+L+ Y+KC ++ A+ F + + ++WNA+ ++
Sbjct: 602 VSG-FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNAL------------VS 648
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
GF Q G+ E AL F+RM + + N + + A ++ K GK++H + +
Sbjct: 649 GFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDS 708
Query: 296 STGVGIALISIQG-LGTGS--------------FVWNSLIDMYGRCG-----------AI 329
T V A+IS+ G+ S WN++I+ Y + G I
Sbjct: 709 ETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMI 768
Query: 330 QKN----------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
N +G YFE M EY + P E Y C+VD+L RAG
Sbjct: 769 HSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLL 828
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
+F+ +MP EP + C N +I E AA HL ELEP S
Sbjct: 829 SRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLY 888
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+HSF GD +H L +I E L
Sbjct: 889 AVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLT 948
Query: 435 SEIKKIGYMK-------------RIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+IGY++ + P HSEKLA++FGL+S P+ V+KNLR+C
Sbjct: 949 KRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCN 1008
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K+VSK REII+ D YRFHHF GACSC DYW
Sbjct: 1009 DCHDWIKFVSKVSN----REIIVRDAYRFHHFEGGACSCKDYW 1047
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 104/501 (20%), Positives = 193/501 (38%), Gaps = 129/501 (25%)
Query: 24 TYALIFQRCPKLN-NLELGIQVHAHLIVCGVE------------------LCAFLGMFEK 64
T + + C K N +L+ G ++H+ ++ G + L L +F++
Sbjct: 69 TLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDE 128
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVG 114
MPER +F+W M+ ++ LF +++E GV +AC + V
Sbjct: 129 MPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC---RGGSVA 185
Query: 115 KDVYDYM-ISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEE---KDFSN------- 160
DV + + I ++G + V P++D++ + G ++ A F+ KD S+
Sbjct: 186 FDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISG 245
Query: 161 --------------------------------------LSLLKHGKEIHPHHLKKDDLES 182
+ L+ G+++H LK S
Sbjct: 246 LSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG-FSS 304
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D V N+L+ Y L A FS + Q+ V++N + I G +Q G
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTL------------INGLSQCGY 352
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE A+E F RM ++P++ +L+ ++ AC+ G+++H Y +
Sbjct: 353 GEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTK------------ 400
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G + + +L+++Y +C I+ YF +E +E +L
Sbjct: 401 ----LGFASNDKIEGALLNLYAKCSDIET--ALNYF--------LETEVENVVLWNVMLV 446
Query: 363 RAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA--RHLFELEPLSSG-KVHSFIAGDTS 419
G DD N + F E P+ + + + L L G ++HS I TS
Sbjct: 447 AYGLLDDLRNSFR--IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII-KTS 503
Query: 420 HSLVHKISEKLMRLYSEIKKI 440
L + L+ +Y+++ K+
Sbjct: 504 FQLNAYVCSVLIDMYAKLGKL 524
>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 840
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/673 (25%), Positives = 283/673 (42%), Gaps = 206/673 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T + + C L+ L G +H + I +E F+ +F +
Sbjct: 136 TLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195
Query: 66 PER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
P+R N WT+M+ Y G + + F + ++G + AC+ + + G
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFG 255
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCG-----RMEMASGEFEE-------------- 155
+ V+ +I F N V+ ++DM+ KCG RM + + E ++
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315
Query: 156 --------------------KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLV 186
DF+ S+LK G+ +H +K ++ V
Sbjct: 316 GYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTV 374
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+N+L+D YAK L A F+KI K ++SW +++ GY GF E+ A
Sbjct: 375 SNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK------------A 422
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L+ F M + + ++ V +ACA++ + G+++H + I+ S G +L+S
Sbjct: 423 LQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHA----NFIKSSAG---SLLSA 475
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQK-----------------------------NEGWRY 337
+ NSLI MY +CG ++ G Y
Sbjct: 476 E---------NSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSY 526
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
FE M+K Y ++PA ++Y CM+DLL RAG+ ++ + + +M EP + C
Sbjct: 527 FESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHG 586
Query: 388 NPDIAEHAARHLFELEPLSS---------------------------------------- 407
N ++ E A ++L +LEP +S
Sbjct: 587 NLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWI 646
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACG 450
+VH+FI+ D SH L +I K+ + IK+ G++ K
Sbjct: 647 EMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAY 706
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFGL++ + G+P+R+ KNLR+CGDCHS KY+S K R II+ D FH
Sbjct: 707 HSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFK----RHIILRDLNCFH 762
Query: 511 HFVDGACSCGDYW 523
HF++G CSCGD+W
Sbjct: 763 HFIEGKCSCGDFW 775
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 101/277 (36%), Gaps = 91/277 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F + P N +W+S++ Y G E + F + +G V +ACS L
Sbjct: 90 LFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSL 149
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK ++ Y I I+ E N V ++DM+ KC
Sbjct: 150 LHTGKMIHCYAIKIQLEANIFVATGLVDMYSKC--------------------------- 182
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
KC L+ + FS +K+ V W AML GYA
Sbjct: 183 -------------------------KC-LLEAEYLFFSLPDRKNYVQWTAMLTGYA---- 212
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G+ A++ F M M+ N + +L AC + + G+++HG ++
Sbjct: 213 --------QNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCII- 263
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G G +V ++L+DMY +CG
Sbjct: 264 ---------------WSGFGPNVYVQSALVDMYAKCG 285
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 34/216 (15%)
Query: 139 MFIKC--GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
+FI+C G +S + S LS K+G+ L D N ++ YA
Sbjct: 23 LFIRCIHGIAHYSSNLDSNQLLSELS--KNGRVDEARKLFDQMPYRDKYTWNIMISAYAN 80
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
L A F++ + ++W+++++GY G E+ G Q FS+M
Sbjct: 81 LGNLVEARKLFNETPIXNSITWSSLVSGYCKNGC--EVEGLRQ----------FSQMWSD 128
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
+P+ +L VL AC+ + GK IH Y ++ IQL + FV
Sbjct: 129 GQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIK--IQLEANI--------------FVA 172
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMM-KKEYNMEPAM 351
L+DMY +C + + E + +F + +K Y AM
Sbjct: 173 TGLVDMYSKCKCLLEAE-YLFFSLPDRKNYVQWTAM 207
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 173/644 (26%), Positives = 274/644 (42%), Gaps = 190/644 (29%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLI-----------VCGVELCAFLG-------MFE 63
+ TY C KL++L G Q+HA +I VEL A G +F
Sbjct: 294 STTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFS 353
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+ +RN SWT ++G + G + E + LF ++++ + D +
Sbjct: 354 SLRDRNTVSWTVLIGGFLQYGCFSESLELF------------NQMRAELMTVDQFALATI 401
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
I + C R +DM + +++H LK +
Sbjct: 402 I----SGCSNR--MDMCL-------------------------ARQLHSLSLKSGHTRA- 429
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFREEITG--- 236
++++NSL+ YAKC L+ A FS ++++ +VSW ML Y+ +G RE G
Sbjct: 430 VVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMST 489
Query: 237 ------------FTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ Q+G E L+ +S M+ + D+ P+ ++ + CA + KLG +
Sbjct: 490 RNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQ 549
Query: 284 IHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYGRCGA 328
I G+ ++ + L T V A+I++ L V WN++I Y + G
Sbjct: 550 ITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGM 609
Query: 329 IQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
++ EG YF+M+K+++N+ P +E +
Sbjct: 610 GKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFS 669
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLLARAG + N + +MP +P++ C N ++AE AA+HLF+L+
Sbjct: 670 CMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSP 729
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
SG KVH F A D SH
Sbjct: 730 DSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQ 789
Query: 423 VHKISEKLMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
V I EKL L +I ++GY++ HSEKLA+AFG+++ P+ ++KNLR+C
Sbjct: 790 VIAIREKLDELMEKIAQLGYVRTESLRSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRIC 849
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ K +S RE ++ D RFHHF G+CSCGDYW
Sbjct: 850 GDCHTVIKLISTVTG----REFVIRDAVRFHHFKGGSCSCGDYW 889
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 133/331 (40%), Gaps = 69/331 (20%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F +MP R+V SW ++M Y G + + + F + G K+C L
Sbjct: 117 LFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALG 176
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
H V + + F+G+ V ++DMF++CG ++ AS +F + +
Sbjct: 177 WHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIE------------ 224
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ NS++ YAK + A F + ++ +VSWN M
Sbjct: 225 -----------RPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMM-------- 265
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
++ +Q G AL M ++ ++ + + L ACA++ GK++H V+
Sbjct: 266 ----VSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVI 321
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
R +L I +V ++++++Y +CG + E R F ++ +
Sbjct: 322 R-----------SLPCID-----PYVASAMVELYAKCGCFK--EARRVFSSLRDRNTVS- 362
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ ++ + G F ++L +M E
Sbjct: 363 ----WTVLIGGFLQYGCFSESLELFNQMRAE 389
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 40/207 (19%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L+ D E +++ +N +M+ YAK L A F ++ ++ + SWN +++GY
Sbjct: 86 LRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGY--------- 136
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q G A+E F M ++ D PN + + +C + ++ ++ G + +
Sbjct: 137 ---YQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGF 193
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
Q V TG ++DM+ RCGA+ + K+++
Sbjct: 194 QGDPDV----------ATG------IVDMFVRCGAV---------DFASKQFSQIERPTV 228
Query: 354 YC--CMVDLLARAGQFDDTLNFMKKMP 378
+C M+ A++ D L + MP
Sbjct: 229 FCRNSMLAGYAKSYGVDHALELFESMP 255
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 172/644 (26%), Positives = 268/644 (41%), Gaps = 209/644 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KM R+VFSW +M+ Y+ G E++ +F + V+ A S Y+
Sbjct: 80 LFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM---SVHDAVS-----------YNT 125
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL---------KHGKEIH 171
+I+ F GN C + L+ F++ M FE D++++S+L K GK+IH
Sbjct: 126 VIA-GFSGNGCSSQ-ALEFFVR-----MQEEGFESTDYTHVSVLHACSQLLDIKRGKQIH 178
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-- 229
+ L + V N+L + YAKC L A F ++ K++VSWN+M++GY G
Sbjct: 179 GR-IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQP 237
Query: 230 -----------------------------------------FRE-----------EITGF 237
FRE + G
Sbjct: 238 ETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC 297
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G E AL F M+ +++P+ ++S V+++CA++ G+ +HG + +
Sbjct: 298 AQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDL 357
Query: 298 GVGIALISI---------------QGLGTGSFVWNSLIDMYGR----------------- 325
V AL+ + + L WNS+I Y +
Sbjct: 358 LVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHE 417
Query: 326 ------------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
G +++ +G YF + K + M P + Y CM++LL RAG
Sbjct: 418 NLKPDNITFVGVLSACMHAGLVERGQG--YFYSISKIHGMNPTFDHYSCMINLLGRAGYM 475
Query: 368 DDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEPLSSG--------- 408
D ++ +K M FEP+ C+ + E AARHLFEL+P ++G
Sbjct: 476 DKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIY 535
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+VH F+A D +HS +I E+L RL
Sbjct: 536 AACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLI 595
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG-SPLRVIKNLRMC 479
++++ G+ K C HSEKLALAF LI G +P+R++KN+R+C
Sbjct: 596 KKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVC 655
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH K+VSK + R II+ D RFHHF++G CSC D W
Sbjct: 656 GDCHVFMKFVSKIIR----RPIILRDINRFHHFIEGRCSCKDSW 695
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 36/181 (19%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------- 233
+D + N L+ YAK L A F K+ ++ + SWNAML+ Y+ G E+
Sbjct: 56 TDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQM 115
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I GF+ G ALEFF RM + + + VL AC+Q+ K GK
Sbjct: 116 SVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGK 175
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+IHG ++ LG FVWN+L +MY +CGA+ + W + M+
Sbjct: 176 QIHGRIV----------------ATSLGESVFVWNALTNMYAKCGALDQAR-WLFDRMVN 218
Query: 343 K 343
K
Sbjct: 219 K 219
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 154/514 (29%), Positives = 219/514 (42%), Gaps = 161/514 (31%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HGK +H ++ E DL V N+L+D YAKC + A F +IK+K +VSWNAM+ GY
Sbjct: 31 HGKAVHGIAVRSGSFE-DLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGY 89
Query: 226 --------ALGGF---REE------------ITGFTQ---------------YGDGETAL 247
ALG F REE I F Q +G+ AL
Sbjct: 90 SQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDAL 149
Query: 248 EFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL---------- 295
E FS M + D ++PN ++S L ACA++ +LG++IH Y+LR+H
Sbjct: 150 ELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLI 209
Query: 296 -----STGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK------------------ 331
S + +A L +FV W SL+ YG G ++
Sbjct: 210 DMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGV 269
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
++G +F M KE+ + P E Y CMVDLL RAG+ ++ + ++
Sbjct: 270 TLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEG 329
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------------- 409
M EPSS C N ++ EHAA+ L EL + G
Sbjct: 330 MQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDV 389
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+F D +H +I E L L IK +GY+
Sbjct: 390 ARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYV 449
Query: 444 KRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
HSEKLALA+G++ ++PG+P+R+ KNLR+CGDCH+ Y+
Sbjct: 450 PETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYI 509
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S + EII+ D+ RFHHF G+CSC YW
Sbjct: 510 SMI----IDHEIILRDSSRFHHFKKGSCSCSGYW 539
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 23/124 (18%)
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
DM+P+ +SL VL ACA + + GK +HG +R G FV
Sbjct: 8 DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVR----------------SGSFEDLFVG 51
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
N+L+DMY +CG + +E + F+ +K E + + MV+ ++ G+F+D L +K
Sbjct: 52 NALVDMYAKCGMV--DEASKVFDRIK-----EKDVVSWNAMVNGYSQIGRFEDALGLFEK 104
Query: 377 MPFE 380
M E
Sbjct: 105 MREE 108
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 21/98 (21%)
Query: 15 LTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELCAFLG-- 60
L P+ T++ ALI C +L L LG Q+HA+++ C +++ A G
Sbjct: 161 LVKPNCFTISCALI--ACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDI 218
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ + ++N SWTS+M Y + G +E + +F
Sbjct: 219 DVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVF 256
>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
Length = 513
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 146/496 (29%), Positives = 229/496 (46%), Gaps = 144/496 (29%)
Query: 153 FEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
F+ F+ SLLK G++IH +K D D+ V ++L+D YA+C + +A
Sbjct: 37 FKPNGFTFASLLKAAGASASSGIGEQIHALTVKYD-WHDDVYVGSALLDMYARCGRMDMA 95
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F +++ K+ VSWNA++AG+A + GDGET L F+ M + +
Sbjct: 96 IAVFDQLESKNGVSWNALIAGFA------------RKGDGETTLLMFAEMQRNGFEATHF 143
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV-------- 315
+ S V +A A + + GK +H ++++ +LS VG ++ + +GS +
Sbjct: 144 TYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYA-KSGSMIDARKVFDH 202
Query: 316 --------WNSLIDMYGRCGAIQK---------------------------------NEG 334
WNS++ + + G ++ EG
Sbjct: 203 VDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEG 262
Query: 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC- 387
+YF+MMK E+N+EP ++ Y +VDLL RAG +D L F+ KMP +P++A C
Sbjct: 263 KQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCR 321
Query: 388 ---NPDIAEHAARHLFELEPLSSG------------------------------------ 408
N I + AA H+FEL+P +G
Sbjct: 322 MHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPAC 381
Query: 409 -------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIP 447
VH F+A D +H +I +K + +I+K GY+ ++
Sbjct: 382 SWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAK 441
Query: 448 ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
HSEK+ALAF LI+ G+ +R++KN+R+CGDCHS +Y+SK EREI++ D
Sbjct: 442 LQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKV----FEREIVVRDTN 497
Query: 508 RFHHFVDGACSCGDYW 523
RFHHF G+CSCGDYW
Sbjct: 498 RFHHFSSGSCSCGDYW 513
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 29/173 (16%)
Query: 6 VTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
TLL+ + N E T TY+ +F + LE G VHAH+I G L AF+G
Sbjct: 125 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 184
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY---- 102
+F+ + ++++ +W SM+ + G E V F + GV+
Sbjct: 185 DMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 244
Query: 103 ------KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + GK +D M E V+D+ + G + A
Sbjct: 245 TFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDA 297
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 163/600 (27%), Positives = 253/600 (42%), Gaps = 172/600 (28%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVY 102
EL A FEKMP+R++ SW SM+ Y+ GY E + +F +++E +
Sbjct: 225 ELAA--SQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASIL 282
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
AC+ L+ +GK ++ Y++ + E + V ++ M+ K G +E+A E SNL+
Sbjct: 283 SACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLN 342
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
++ SL+D Y K +K A F+K++ + +V+W AM+
Sbjct: 343 IIAF---------------------TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMI 381
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
GY G + ALE F M+ +PN+ +L+ +L+ + + + GK
Sbjct: 382 VGYVQNGLWND------------ALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-----------------VWNSLIDMYGR 325
+IH ++ + V ALI++ TG+ W S+I +
Sbjct: 430 QIHASAIKAGESSTPSVTNALIAMYA-KTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQ 488
Query: 326 CGAIQKNEGWRYFEMM----------------------------KKEYNM-------EPA 350
G E FE M +K YNM EP
Sbjct: 489 HGL--GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPT 546
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLF 400
+ Y CM+DL RAG + F++ MP EP S C N D+A+ AA L
Sbjct: 547 LSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLL 606
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
++P +SG +VH+F D
Sbjct: 607 LIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVED 666
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLIS 463
H +I + + ++ EIKK+G++ + HSEKLA+AFGL++
Sbjct: 667 VIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLN 726
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T + LR++KNLR+C DCHS K++SK REII+ D RFHHF DG+CSC DYW
Sbjct: 727 TPENTALRIMKNLRVCNDCHSAIKFISKLVG----REIIVRDATRFHHFKDGSCSCRDYW 782
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 178/410 (43%), Gaps = 65/410 (15%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+ +MP+ + SWT+++ YN G ++ + +F +I E V +C+ +
Sbjct: 98 LLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQT 157
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ ++ +++ + V +L+M+ KCG +A F+ N+S
Sbjct: 158 LDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTW------ 211
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N+L+ Y + ++A +F K+ + +VSWN+M++GY+ G+
Sbjct: 212 -----------------NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254
Query: 231 REEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
E AL FS+M+ + ++P+ +L+ +L+ACA ++ +GK+IH Y+L
Sbjct: 255 NLE------------ALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
R + S VG ALIS+ G + LI + R + + K N++P
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEI-ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKP 361
Query: 350 AME-----------QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE--HAA 396
A E + M+ + G ++D L + M E EP + +A +
Sbjct: 362 AREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE--GPEPNSYTLAAMLSVS 419
Query: 397 RHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
L LE + AG++S ++ L+ +Y++ I KR+
Sbjct: 420 SSLTILEHGKQIHASAIKAGESS---TPSVTNALIAMYAKTGNINVAKRV 466
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 110/233 (47%), Gaps = 47/233 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H +KK L + + N+LM FYAK L+ AH F ++ K SWN +++GYA
Sbjct: 29 GRSVHCQIIKKG-LHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYA 87
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G E I G+ Q+G + A+ F++MI + P+ ++S
Sbjct: 88 KQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSN 147
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VL++CA + +G++IH +V++ GLG+ V SL++MY +CG
Sbjct: 148 VLSSCAANQTLDIGRKIHSFVVK----------------LGLGSCVPVATSLLNMYAKCG 191
Query: 328 --AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
I K F+ M + + + ++ L ++GQF+ + +KMP
Sbjct: 192 DPVIAK----VVFDRMTVK-----NISTWNALISLYMQSGQFELAASQFEKMP 235
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 169/585 (28%), Positives = 260/585 (44%), Gaps = 183/585 (31%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------- 155
K C++L + GK V+ ++++ F+ + ++ +L M+ +CG +E A F+E
Sbjct: 82 KRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMV 141
Query: 156 --------------------------------KDFSNLSLLKH---------GKEIHPHH 174
+F+ SL+K G++IH
Sbjct: 142 SWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACC 201
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
K S++ V +SL+D YA+C YL A F K+ K+ VSWNA++AGYA
Sbjct: 202 WKYG-CHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA-------- 252
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+ G+GE AL F RM + +P + S +L++C+ + + GK +H ++++ +
Sbjct: 253 ----RKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQK 308
Query: 295 LSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG----AIQK--- 331
L VG L+ + +GS NS++ Y + G A Q+
Sbjct: 309 LVGYVGNTLLHMYA-KSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDE 367
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG YF +M+K YN+EP + Y +VDLL RAG
Sbjct: 368 MIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHYATIVDLLGRAG 426
Query: 366 QFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELEP----------- 404
D +F+++MP EP+ S N ++ +AA+ +FEL+P
Sbjct: 427 LLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLAN 486
Query: 405 --LSSGK------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
S+G+ VH F+A D +H KI + +
Sbjct: 487 IYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEK 546
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L +IK+IGY+ K + HSEKLAL+F L++T PGS +R++KN+R+
Sbjct: 547 LNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRV 606
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCHS KYVS K REII+ D RFHHF DG CSCGDYW
Sbjct: 607 CGDCHSAIKYVSLVVK----REIIVRDTNRFHHFCDGFCSCGDYW 647
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 43/249 (17%)
Query: 136 VLDMFIKCGRMEMASGEFEE--KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
VLD+ I CG +E + K + L LK GK +H H L + + DL++ NSL+
Sbjct: 61 VLDL-IDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLN-SNFKHDLVIQNSLLFM 118
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
YA+C L+ A F ++ + +VSW +M ITG+ Q AL F RM
Sbjct: 119 YARCGSLEGARRLFDEMPHRDMVSWTSM------------ITGYAQNDRASDALLLFPRM 166
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
+ +PN +LS ++ C + + G++IH ++ G +
Sbjct: 167 LSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKY----------------GCHSNV 210
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMM--KKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
FV +SL+DMY RCG + E F+ + K E + + Y AR G+ ++ L
Sbjct: 211 FVGSSLVDMYARCGYL--GEAMLVFDKLGCKNEVSWNALIAGY-------ARKGEGEEAL 261
Query: 372 NFMKKMPFE 380
+M E
Sbjct: 262 ALFVRMQRE 270
>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 697
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 171/652 (26%), Positives = 277/652 (42%), Gaps = 199/652 (30%)
Query: 8 LLLQSMDLTNPDECTVT---YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
++ ++D + E T Y + C + +L+ +HAHL FL
Sbjct: 47 IIRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLI 106
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+ MP R++ SWTS++ Y A +
Sbjct: 107 HLYCKCGAVADARRVFDGMPARDMCSWTSLIAGY-----------------------AQN 143
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
++ D +G + M+ +F+ N +L K +SG
Sbjct: 144 DMPDEALG--LLPGMLRGRFKPNGFTFASLL----KAAGASASSGI-------------- 183
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH +K D D+ V ++L+D YA+C + +A F +++ K+ VSWNA++AG+A
Sbjct: 184 GEQIHALTVKYD-WHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFA 242
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ GDGET L F+ M + + + S V +A A + + GK +H
Sbjct: 243 ------------RKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHA 290
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQ 330
++++ +LS VG ++ + +GS + WNS++ + + G +
Sbjct: 291 HMIKSGERLSAFVGNTILDMYA-KSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ EG +YF+MMK EYN+EP ++ Y +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTV 408
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS 407
VDLL RAG +D L F+ KMP +P++A C N I + AA H+FEL+P +
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G VH F+A D +H
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSE 528
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I +K + +I+K GY+ ++ HSEK+ALAF LI+ G+ +
Sbjct: 529 EIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATI 588
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
R++KN+R+CGDCHS +Y+SK K REI++ D RFHHF G+CSCGDY
Sbjct: 589 RIMKNIRICGDCHSAFRYISKVFK----REIVVRDTNRFHHFSSGSCSCGDY 636
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 29/173 (16%)
Query: 6 VTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
TLL+ + N E T TY+ +F + LE G VHAH+I G L AF+G
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY---- 102
+F+++ +++V +W SM+ + G E V F + GV+
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368
Query: 103 ------KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + GK +D M E V+D+ + G + A
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDA 421
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 173/607 (28%), Positives = 265/607 (43%), Gaps = 180/607 (29%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGM---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNL 92
N L+ +QV L+ + C+ M F+KMP+++V SWT+++ + G + + L
Sbjct: 448 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 507
Query: 93 FYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152
F + EG+ D+ MIS + + C
Sbjct: 508 FREVQLEGI--------------DLDVMMIS--------------SILLAC--------- 530
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
S L L+ KEIH + ++K SDL++ N ++D Y +C + A F I+
Sbjct: 531 ------SGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEF 582
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K +VSW +M++ Y G E ALE F M +T ++P++ISL +L+A
Sbjct: 583 KDVVSWTSMISCYVHNGLANE------------ALELFHLMKETGVEPDSISLVSILSAA 630
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------QGLGTGSFV-------WN 317
A + K GKEIHG+++R L + L+ + + +F+ W
Sbjct: 631 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 690
Query: 318 SLIDMYGR--CG--AIQ-----------------------------KNEGWRYFEMMKKE 344
S+I+ YG CG AI NEG R+ E MK E
Sbjct: 691 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 750
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEH 394
Y +EP E Y C+VDLL RA ++ F+K M EP++ C N ++ E
Sbjct: 751 YQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 810
Query: 395 AARHLFELEPLSSG-------------------------------------------KVH 411
AA+ L E++P + G KVH
Sbjct: 811 AAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVH 870
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEI-KKIGYMKRIPAC--------------GHSEKLA 456
+F+A D SH ++I KL ++ ++ K+ GY+ + GHSE+LA
Sbjct: 871 TFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLA 930
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+A+G+++T G+ LR+ KNLR+CGDCH+ K +SK ERE++M D RFHHF G
Sbjct: 931 IAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKF----FERELVMRDANRFHHFKGGV 986
Query: 517 CSCGDYW 523
CSCGD W
Sbjct: 987 CSCGDVW 993
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 152/365 (41%), Gaps = 65/365 (17%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T T+ Q C + ++ G+ +HA ++ + NVF +++ MY
Sbjct: 318 TYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-------------NVFVANALIAMYA 364
Query: 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
G E N+FY + D S L V +Y + E ++P L I
Sbjct: 365 RFGKMGEAANIFYNMDDWDTISWNSMLSGF-VQNGLYHEALQFYHEMRDAGQKPDLVAVI 423
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
SG +G +IH + +K + L+SDL V NSL+D YAK +K
Sbjct: 424 SIIAASARSGN-----------TLNGMQIHAYAMK-NGLDSDLQVGNSLVDMYAKFCSMK 471
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
C F K+ K +VSW ++AG+A Q G ALE F + + +
Sbjct: 472 YMDCIFDKMPDKDVVSWTTIIAGHA------------QNGSHSRALELFREVQLEGIDLD 519
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
+ +S +L AC+ +K KEIH Y++R G++ + +Q N ++D
Sbjct: 520 VMMISSILLACSGLKLISSVKEIHSYIIRK--------GLSDLVLQ---------NGIVD 562
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL---NFMKKMP 378
+YG CG + + R FE+++ + + + M+ G ++ L + MK+
Sbjct: 563 VYGECGNV--DYAARMFELIEFK-----DVVSWTSMISCYVHNGLANEALELFHLMKETG 615
Query: 379 FEPSS 383
EP S
Sbjct: 616 VEPDS 620
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/388 (23%), Positives = 153/388 (39%), Gaps = 99/388 (25%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV--------------------CGVELCAFLGMFE 63
Y+ + + C L G QVHAH+I CG L +F+
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGC-LVDAEKLFD 174
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
MP + +F+W +M+G Y G E + +L ++Y M
Sbjct: 175 GMPHKTIFTWNAMIGAYVTNG--EPLGSL-----------------------ELYREMRV 209
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+AC +L CG + KD + G E+H +K+ + S
Sbjct: 210 SGIPLDACTFPCILK---ACGLL---------KD------RRCGAEVHGLAIKEGYV-SI 250
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V NS++ Y KC L A F ++ +K +VSWN+M++ Y+ G E
Sbjct: 251 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE--------- 301
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M + + PNT + L AC K G IH VL+ ++ V A
Sbjct: 302 ---ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANA 358
Query: 303 LISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
LI++ +G + + WNS++ + + G +E +++ M ++
Sbjct: 359 LIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLY--HEALQFYHEM-RDAGQ 415
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+P + ++ AR+G +TLN M+
Sbjct: 416 KPDLVAVISIIAASARSG---NTLNGMQ 440
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 37/223 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+++H H + + L + + ++ L+ Y KC L A F + K + +WNAM+
Sbjct: 130 LSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIG 189
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y G E G +LE + M + + + + +L AC +K + G E
Sbjct: 190 AYVTNG---EPLG---------SLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAE 237
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+HG ++ +G + FV NS++ MY +C + N + F+ M +
Sbjct: 238 VHGLAIK----------------EGYVSIVFVANSIVGMYTKCNDL--NGARQLFDRMPE 279
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNF---MKKMPFEPSS 383
+ + + + M+ + GQ + L M+K P++
Sbjct: 280 KED----VVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNT 318
>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 840
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 173/673 (25%), Positives = 282/673 (41%), Gaps = 206/673 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T + + C L+ L G +H + I +E F+ +F +
Sbjct: 136 TLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSL 195
Query: 66 PER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
P+R N WT+M+ Y G + + F + ++G + AC+ + + G
Sbjct: 196 PDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFG 255
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCG-----RMEMASGEFEE-------------- 155
+ V+ +I F N V+ ++DM+ KCG RM + + E ++
Sbjct: 256 RQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTH 315
Query: 156 --------------------KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLV 186
DF+ S+LK G+ +H +K ++ V
Sbjct: 316 GYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTG-FDACKTV 374
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+N+L+D YAK L A F+KI K ++SW +++ GY GF E+ A
Sbjct: 375 SNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK------------A 422
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L+ F M + + ++ V +ACA++ + G+++H + I+ S G +L+S
Sbjct: 423 LQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHA----NFIKSSAG---SLLSA 475
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQK-----------------------------NEGWRY 337
+ NSLI MY +CG ++ G Y
Sbjct: 476 E---------NSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSY 526
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
FE M+K Y ++PA + Y CM+DLL RAG+ ++ + + +M EP + C
Sbjct: 527 FESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHG 586
Query: 388 NPDIAEHAARHLFELEPLSS---------------------------------------- 407
N ++ E A ++L +LEP +S
Sbjct: 587 NLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWI 646
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACG 450
+VH+FI+ D SH L +I K+ + IK+ G++ K
Sbjct: 647 EMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAY 706
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFGL++ + G+P+R+ KNLR+CGDCHS KY+S K R II+ D FH
Sbjct: 707 HSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFK----RHIILRDLNCFH 762
Query: 511 HFVDGACSCGDYW 523
HF++G CSCGD+W
Sbjct: 763 HFIEGKCSCGDFW 775
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 102/277 (36%), Gaps = 91/277 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F + P +N +W+S++ Y G E + F + +G V +ACS L
Sbjct: 90 LFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSL 149
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK ++ Y I I+ E N V ++DM+ KC
Sbjct: 150 LHTGKMIHCYAIKIQLEANIFVATGLVDMYSKC--------------------------- 182
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
KC L+ + FS +K+ V W AML GYA
Sbjct: 183 -------------------------KC-LLEAEYLFFSLPDRKNYVQWTAMLTGYA---- 212
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G+ A++ F M M+ N + +L AC + + G+++HG ++
Sbjct: 213 --------QNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCII- 263
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G G +V ++L+DMY +CG
Sbjct: 264 ---------------WSGFGPNVYVQSALVDMYAKCG 285
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 34/216 (15%)
Query: 139 MFIKC--GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
+FI+C G +S + S LS K+G+ L D N ++ YA
Sbjct: 23 LFIRCIHGIAHYSSNLDSNQLLSELS--KNGRVDEARKLFDQMPYRDKYTWNIMISAYAN 80
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
L A F++ K+ ++W+++++GY G E+ G Q FS+M
Sbjct: 81 LGNLVEARKLFNETPIKNSITWSSLVSGYCKNGC--EVEGLRQ----------FSQMWSD 128
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
+P+ +L VL AC+ + GK IH Y ++ IQL + FV
Sbjct: 129 GQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIK--IQLEANI--------------FVA 172
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMM-KKEYNMEPAM 351
L+DMY +C + + E + +F + +K Y AM
Sbjct: 173 TGLVDMYSKCKCLLEAE-YLFFSLPDRKNYVQWTAM 207
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 174/661 (26%), Positives = 268/661 (40%), Gaps = 192/661 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-----------CGVELCAFLGM----- 61
PD +T + C L LG Q+H + C V++ A GM
Sbjct: 227 PDN--ITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEAN 284
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
F M ++V SW +M+ Y+ +G +E+ V LF ++++ ++ DV
Sbjct: 285 TVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLF------------EKMQEEKIKMDVVT 332
Query: 120 YMISIK--------FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ +I +E V R +L IK + + S +++ L HGKEIH
Sbjct: 333 WSAAISGYAQRGLGYEALG-VCRQMLSSGIKPNEVTLIS---VLSGCASVGALMHGKEIH 388
Query: 172 ------PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLA 223
P L+K+ + +V N L+D YAKC+ + A F + K++ +V+W M+
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ--PNTISLSGVLAACAQVKGFKLG 281
GY +Q+GD ALE S M + D Q PN ++S L ACA + ++G
Sbjct: 449 GY------------SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 282 KEIHGYVLRHH------------IQLSTGVG----IALISIQGLGTGSFVWNSLIDMYGR 325
K+IH Y LR+ I + G L+ + W SL+ YG
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G ++ ++G YF MK + + P E
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE-----PC-----NPDIAEHAARHLFEL 402
Y C+VDLL RAG+ + L +++MP EP C ++ E+AA + EL
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL 676
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
G +F GD +
Sbjct: 677 ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKT 736
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLI 462
H +I + L+ IK IGY +P G HSEKLALA+G++
Sbjct: 737 HPHAKEIYQVLLDHMQRIKDIGY---VPETGFALHDVDDEEKDDLLFEHSEKLALAYGIL 793
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
+T G+ +R+ KNLR+CGDCH+ Y+S R + +II+ D+ RFHHF +G+CSC Y
Sbjct: 794 TTPQGAAIRITKNLRVCGDCHTAFTYMS----RIIDHDIILRDSSRFHHFKNGSCSCKGY 849
Query: 523 W 523
W
Sbjct: 850 W 850
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 197/466 (42%), Gaps = 87/466 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L+ S+ T PD T+ +F+ C +++++ G HA +V G F+G
Sbjct: 117 LMHSLSWT-PDN--YTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYS 173
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
+F++M +V SW S++ Y LG + + +F + +E
Sbjct: 174 RCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLV 233
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
V C+ L H +GK ++ + ++ + N V ++DM+ KCG M+ A+ FS
Sbjct: 234 NVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEAN-----TVFS 288
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---- 215
N+S+ D++ N+++ Y++ + A F K++++ +
Sbjct: 289 NMSV------------------KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W+A ++GYA Q G G AL +M+ + ++PN ++L VL+ CA V
Sbjct: 331 VTWSAAISGYA------------QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASV 378
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
GKEIH Y +++ I L G G + V N LIDMY +C +
Sbjct: 379 GALMHGKEIHCYAIKYPIDLRK---------NGHGDENMVINQLIDMYAKCKKVDTARA- 428
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHA 395
M E + + M+ ++ G + L + +M E P N A
Sbjct: 429 ----MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP-NAFTISCA 483
Query: 396 ARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
L L GK +H++ + +++ +S L+ +Y++ I
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 21/97 (21%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELCAFLG--- 60
T P+ T++ AL+ C L L +G Q+HA+ + C +++ A G
Sbjct: 473 TRPNAFTISCALV--ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSIS 530
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ M +N +WTS+M Y + GY EE + +F
Sbjct: 531 DARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIF 567
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 161/594 (27%), Positives = 247/594 (41%), Gaps = 185/594 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLGM-------FEKM 65
T+ L+ + C ++ +L LG +H+H+ G V++ A G+ F++
Sbjct: 138 TFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------YKACSELKDHRVGKD 116
PE + SW M+G Y G ++ +F + D V Y S K+ G
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKE---GLG 254
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ M+ K E N V L G ME G++ E+ +++
Sbjct: 255 LFQDMMGEKIEPNESVLVNALSACAHLGAME--QGQWIER-----------------YME 295
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ ++ + + +L+D Y+KC ++ A F K+K+K++++W+AM+ G A+ G
Sbjct: 296 RKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAING------- 348
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
G+ AL FS+M ++PN ++ G+L AC+ K
Sbjct: 349 -----QGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSK-------------------- 383
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
L+D EG +F M Y ++P +CC
Sbjct: 384 ----------------------LVD-----------EGCSFFHSMTSIYGLKPNAHHHCC 410
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS 406
MVDL RAG D +K MPF+P+SA C + ++ E + L EL+P
Sbjct: 411 MVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNH 470
Query: 407 SGK-------------------------------------------VHSFIAGDTSHSLV 423
G+ +H F+AGD+SH +
Sbjct: 471 GGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQL 530
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
I KL + E+K GY K C HSEKLA+AFGLI T PG+
Sbjct: 531 EMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTT 590
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+ KNLR+C DCHS TK +SK REII+ D RFHHF DG+CSC D+W
Sbjct: 591 IRITKNLRVCADCHSATKLISKI----YNREIIVRDRCRFHHFRDGSCSCMDFW 640
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 223/503 (44%), Gaps = 140/503 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K SNLS + +IH + K E+D+ NSL++ YA K+AH F +I +
Sbjct: 123 KACSNLSAFEETTQIHAQ-ITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Query: 216 VSWNAMLAGYALGG--------FREE-----------ITGFTQYGDGETALEFFSRMIQT 256
VSWN+++ GY G FR+ I+G+ Q + AL+ F M +
Sbjct: 182 VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------- 306
D++P+ +SL+ L+ACAQ+ + GK IH Y+ + I++ + +G LI +
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 307 ----QGLGTGSF-VWNSLIDMYGRCG----AIQK-------------------------- 331
+ + S W +LI Y G AI K
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 332 ---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EG F M+++YN++P +E Y C+VDLL RAG D+ F+++MP +P++
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSGK----------------------------- 409
+ C N ++ E L ++P G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 410 --------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------ 449
H F+AGD SH + KI K + ++++ GY+ +
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVD 541
Query: 450 ---------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEKLA+ +GLI T PG+ +R++KNLR+C DCH TK +SK K R+
Sbjct: 542 DDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYK----RD 597
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I+M D RFHHF DG CSCGDYW
Sbjct: 598 IVMRDRTRFHHFRDGKCSCGDYW 620
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 177/663 (26%), Positives = 274/663 (41%), Gaps = 189/663 (28%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LLQ + P ++YA +FQ LN L+LG QVHAH+++ G++ A +G
Sbjct: 58 LLQPLSAPGPPP-ILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYA 116
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+F + E + + SM+ Y G+ E V ++ + G
Sbjct: 117 SSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPF 176
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V K+ EL +GK V+ ++ I + + V ++ ++ KCG + A K F N
Sbjct: 177 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAG-----KVFDN 231
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
+++ D+ N+L+ Y K + A F ++ +++VSW
Sbjct: 232 MTI------------------RDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTT 273
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGF 278
M++GY +Q G + AL F M++ D ++PN +++ VL ACAQ+
Sbjct: 274 MISGY------------SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTL 321
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV------------------WNSLI 320
+ G++IH R + + V IAL ++ GS V WN++I
Sbjct: 322 ERGRQIHELACRMGLNSNASVLIALTAMYA-KCGSLVDARNCFDKLNRNEKNLIAWNTMI 380
Query: 321 DMYGRCG---------------AIQKNE------------------GWRYFEMMKKEYNM 347
Y G IQ ++ G +YF M Y++
Sbjct: 381 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSI 440
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
P +E Y C+ DLL RAG+ + + +MP + C N ++AE AAR
Sbjct: 441 NPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAAR 500
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
LF LEP ++G K H F+
Sbjct: 501 KLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFL 560
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFG 460
GDTSH +I L L ++K GY K HSEKLA+AFG
Sbjct: 561 GGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFG 620
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
+++T + LRV KNLR+CGDCH+ ++S+ RE+I+ D RFHHF G CSCG
Sbjct: 621 ILNTPAETVLRVTKNLRICGDCHTAMVFISEIYG----REVIVRDINRFHHFKGGCCSCG 676
Query: 521 DYW 523
DYW
Sbjct: 677 DYW 679
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 173/607 (28%), Positives = 265/607 (43%), Gaps = 180/607 (29%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGM---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNL 92
N L+ +QV L+ + C+ M F+KMP+++V SWT+++ + G + + L
Sbjct: 412 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 471
Query: 93 FYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152
F + EG+ D+ MIS + + C
Sbjct: 472 FREVQLEGI--------------DLDVMMIS--------------SILLAC--------- 494
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
S L L+ KEIH + ++K SDL++ N ++D Y +C + A F I+
Sbjct: 495 ------SGLKLISSVKEIHSYIIRKG--LSDLVLQNGIVDVYGECGNVDYAARMFELIEF 546
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K +VSW +M++ Y G E ALE F M +T ++P++ISL +L+A
Sbjct: 547 KDVVSWTSMISCYVHNGLANE------------ALELFHLMKETGVEPDSISLVSILSAA 594
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------QGLGTGSFV-------WN 317
A + K GKEIHG+++R L + L+ + + +F+ W
Sbjct: 595 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 654
Query: 318 SLIDMYGR--CG--AIQ-----------------------------KNEGWRYFEMMKKE 344
S+I+ YG CG AI NEG R+ E MK E
Sbjct: 655 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 714
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEH 394
Y +EP E Y C+VDLL RA ++ F+K M EP++ C N ++ E
Sbjct: 715 YQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 774
Query: 395 AARHLFELEPLSSG-------------------------------------------KVH 411
AA+ L E++P + G KVH
Sbjct: 775 AAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVH 834
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEI-KKIGYMKRIPAC--------------GHSEKLA 456
+F+A D SH ++I KL ++ ++ K+ GY+ + GHSE+LA
Sbjct: 835 TFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLA 894
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+A+G+++T G+ LR+ KNLR+CGDCH+ K +SK ERE++M D RFHHF G
Sbjct: 895 IAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKF----FERELVMRDANRFHHFKGGV 950
Query: 517 CSCGDYW 523
CSCGD W
Sbjct: 951 CSCGDVW 957
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 152/365 (41%), Gaps = 65/365 (17%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T T+ Q C + ++ G+ +HA ++ + NVF +++ MY
Sbjct: 282 TYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI-------------NVFVANALIAMYA 328
Query: 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
G E N+FY + D S L V +Y + E ++P L I
Sbjct: 329 RFGKMGEAANIFYNMDDWDTISWNSMLSGF-VQNGLYHEALQFYHEMRDAGQKPDLVAVI 387
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
SG HG +IH + +K + L+SDL V NSL+D YAK +K
Sbjct: 388 SIIAASARSGN-----------TLHGMQIHAYAMK-NGLDSDLQVGNSLVDMYAKFCSMK 435
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
C F K+ K +VSW ++AG+A Q G ALE F + + +
Sbjct: 436 YMDCIFDKMPDKDVVSWTTIIAGHA------------QNGSHSRALELFREVQLEGIDLD 483
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
+ +S +L AC+ +K KEIH Y++R G++ + +Q N ++D
Sbjct: 484 VMMISSILLACSGLKLISSVKEIHSYIIRK--------GLSDLVLQ---------NGIVD 526
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL---NFMKKMP 378
+YG CG + + R FE+++ + + + M+ G ++ L + MK+
Sbjct: 527 VYGECGNV--DYAARMFELIEFK-----DVVSWTSMISCYVHNGLANEALELFHLMKETG 579
Query: 379 FEPSS 383
EP S
Sbjct: 580 VEPDS 584
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 141/376 (37%), Gaps = 103/376 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV--------------------CGVELCAFLGMFE 63
Y+ + + C L G QVHAH+I CG L +F+
Sbjct: 80 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGC-LVDAEKLFD 138
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
MP + +F+W +M+G Y G E + +L ++Y M
Sbjct: 139 GMPHKTIFTWNAMIGAYVTNG--EPLGSL-----------------------ELYREMRV 173
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+AC +L CG + KD ++G E+H +K+ + S
Sbjct: 174 SGIPLDACTFPCILK---ACGLL---------KD------RRYGAEVHGLAIKEGYV-SI 214
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V NS++ Y KC L A F ++ +K +VSWN+M++ Y+ G E
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIE--------- 265
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M + + PNT + L AC K G IH VL+ ++
Sbjct: 266 ---ALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINV----- 317
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLL 361
FV N+LI MY R G + E F YNM+ + M+
Sbjct: 318 -----------FVANALIAMYARFGKM--GEAANIF------YNMDDWDTISWNSMLSGF 358
Query: 362 ARAGQFDDTLNFMKKM 377
+ G + + L F +M
Sbjct: 359 VQNGLYHEALQFYHEM 374
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 181/640 (28%), Positives = 269/640 (42%), Gaps = 184/640 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLI--------------VCGVELCAFLG----MFEKM 65
Y I C G +VHAH+I + C LG +F++M
Sbjct: 245 NYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEM 304
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID---EGVYKACSELKDHRVGKDVYDYMI 122
PERNV SWT+M+ Y+ GY + +NLF+ + GVY A +LK +
Sbjct: 305 PERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVY-AIDKLKLSNPNRPW----- 358
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ E N VL C S+L + G++IH +K + E
Sbjct: 359 -VCTEPNEFTFATVL---TSCT--------------SSLGFIL-GRQIHSLIIKLN-YED 398
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V +SL+D YAK + A F + ++ +VS A+++GYA Q G
Sbjct: 399 HVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYA------------QLGL 446
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E ALE F R+ M+ N ++ +GVL A + + LGK++H +VLR I + +
Sbjct: 447 DEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNS 506
Query: 303 LISI-QGLGTGSFV--------------WNSLIDMYGRCGAIQKNEGWRYFEMMKKE--- 344
LI + G ++ WN+++ Y + G + E + F +M++E
Sbjct: 507 LIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHG--EGREVLKLFTLMREETKV 564
Query: 345 ----------------------------------YNMEPAMEQYCCMVDLLARAGQFDDT 370
+EP ME Y C+VDLL R+G+ ++
Sbjct: 565 KPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEA 624
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------- 409
F+KKMPFEP++A C N DI E A + L E+EP ++G
Sbjct: 625 FEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASA 684
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+H+F A D SH +I K+ L +
Sbjct: 685 GRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSF 744
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K++GY+ + GHSEKLAL+FGLI++ P+RVIKNLR+C DCH
Sbjct: 745 KEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCH 804
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KY+SK RE+ + D RFH V G CSC DYW
Sbjct: 805 NFAKYISKVYG----REVSLRDKNRFHRIVGGKCSCEDYW 840
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 140/333 (42%), Gaps = 42/333 (12%)
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
F + +++P+L M + M+ + + N + G+ +H H +K L S +
Sbjct: 221 FTTHIHLQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPS-VF 279
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG--FTQYGDG 243
+ L+ Y KC L AH F ++ ++++VSW AM++ Y+ G+ + F
Sbjct: 280 LRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKIS 339
Query: 244 ETALEFFSRMIQTD-------MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
T + ++ ++ +PN + + VL +C GF LG++IH +++ + +
Sbjct: 340 LTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYE-- 397
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
FV +SL+DMY + G I +E FE + P + C
Sbjct: 398 --------------DHVFVGSSLLDMYAKDGKI--HEARTVFECL-------PERDVVSC 434
Query: 357 --MVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSF 413
++ A+ G ++ L +++ E + N L L L GK VH+
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKS---NYVTYTGVLTALSGLAALDLGKQVHNH 491
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+ S V + L+ +YS+ + Y +RI
Sbjct: 492 VLRSEIPSFV-VLQNSLIDMYSKCGNLTYSRRI 523
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 164/611 (26%), Positives = 248/611 (40%), Gaps = 185/611 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F++ P+ N + I + H GV G F+ MP ++V SW +M+ +G
Sbjct: 95 LFEKIPQPNTVSYNIMLACHWHHLGVHDAR--GFFDSMPLKDVASWNTMISALAQVGLMG 152
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E LF S E N ++ ++ CG ++
Sbjct: 153 EARRLF-----------------------------SAMPEKNCVSWSAMVSGYVACGDLD 183
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
A F ++ + +++ Y K +++A F
Sbjct: 184 AAVECFYAAPMRSV-----------------------ITWTAMITGYMKFGRVELAERLF 220
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ + LV+WNAM+AGY + G E L F M++T ++PN +SL+
Sbjct: 221 QEMSMRTLVTWNAMIAGY------------VENGRAEDGLRLFRTMLETGVKPNALSLTS 268
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------IQGLGTG 312
VL C+ + +LGK++H V + + T G +L+S IQ
Sbjct: 269 VLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKD 328
Query: 313 SFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYFE 339
WN++I Y + GA +K + G +YF
Sbjct: 329 VVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFN 388
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
M++++ +E E Y CMVDLL RAG+ + ++ +K MPF+P A C N
Sbjct: 389 TMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNL 448
Query: 390 DIAEHAARHLFELEP-LSSG---------------------------------------- 408
++AE AA++L EL+P +++G
Sbjct: 449 NLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEI 508
Query: 409 --KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHS 452
VH F + D H + I EKL L ++K GY +K HS
Sbjct: 509 NSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHS 568
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGL+ G P+RV KNLR+CGDCHS TKY+S E REII+ D RFHHF
Sbjct: 569 EKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEG----REIIVRDTTRFHHF 624
Query: 513 VDGACSCGDYW 523
DG CSC DYW
Sbjct: 625 KDGFCSCRDYW 635
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 171/636 (26%), Positives = 264/636 (41%), Gaps = 190/636 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKD 110
+F+++ +++ SWT M+ Y + E + F + GV KAC L++
Sbjct: 103 VFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQN 162
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
GK V+ ++ +E + V +L+++ +CG + A
Sbjct: 163 FDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISR 222
Query: 150 ---SGEFEE---------------KDFSNLSLLKHG---------KEIHPHHLKKDDLES 182
SG+ E+ F+ S+L+ K IH H LK L +
Sbjct: 223 FAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAG-LST 281
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V+N+LM YAKC ++ + F + ++ VSWN ++ Y Q GD
Sbjct: 282 DVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSY------------VQLGD 329
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE AL FS M++ +Q ++ S +L ACA + +LG ++H + VG A
Sbjct: 330 GERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNA 389
Query: 303 LISIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQK------------ 331
LI + + F+ WN++I Y G AI+
Sbjct: 390 LIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPD 449
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+EG +YF MK++Y +EP ME Y CMV L+ R+G D + F+
Sbjct: 450 ELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFI 509
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL------------------- 405
+ +PFEPS C + ++ +A+ + ELEP
Sbjct: 510 EDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWG 569
Query: 406 ------------------------SSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+ G VH F DTSH+ + I+ L L + +K G
Sbjct: 570 NVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAG 629
Query: 442 YMKRIPACG--------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y ++ A HSE+LALAFGL+ G P+R+IKNLR+C DCHS K
Sbjct: 630 YSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIK 689
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK R+II+ D RFHHF +G+CSC DYW
Sbjct: 690 LISKIVG----RDIIVRDMNRFHHFENGSCSCADYW 721
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 131/317 (41%), Gaps = 79/317 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPERN S+ +++ Y + E LF L EG
Sbjct: 2 VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEG-------------------- 41
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
E N V VL + + ME A + G+ +H LK
Sbjct: 42 -----HELNPFVFTTVLKLLVS---MEWA---------------ELGRIVHGCVLKVG-Y 77
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S+ + +L+D Y+ + +A F +I K +VSW M+A YA E F++
Sbjct: 78 GSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYA------ENDCFSE- 130
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
ALEFFS+M +PN + +GVL AC ++ F GK +H VL+ + + VG
Sbjct: 131 -----ALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVG 185
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ L+++Y RCG ++ WR F M K ++ P + M+
Sbjct: 186 VG----------------LLELYTRCG--DNDDAWRAFGDMPKN-DVIP----WSFMISR 222
Query: 361 LARAGQFDDTLNFMKKM 377
A++GQ + L +M
Sbjct: 223 FAQSGQSEKALEIFCQM 239
>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 823
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 259/643 (40%), Gaps = 213/643 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLGM-------------------F 62
T + + C + + LG Q+H+ ++ G+ + C G+ F
Sbjct: 251 TMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVF 310
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEE-IVNLFYLLIDEGV----------YKACSELKDH 111
++MP NV SWT+++ Y G E V L +++E + KAC+ L D
Sbjct: 311 KRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQ 370
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---------------- 155
G+ ++ ++ V ++ M+ + G ME A F++
Sbjct: 371 DSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGET 430
Query: 156 ------------------KDFSNLSLLK---------HGKEIHPHHLKKDDLESDLLVNN 188
F+ SLL G+++H +K ESD ++N
Sbjct: 431 GRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTG-FESDKGISN 489
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
SL+ Y++C YL A F +++ H ++SW ++ I+ ++G E AL
Sbjct: 490 SLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSI------------ISALAKHGHAERAL 537
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F MI + ++PN ++ VL+AC+ V K
Sbjct: 538 SLFHDMILSGVKPNDVTYIAVLSACSHVGLVK---------------------------- 569
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG YF M+K++ + P ME Y CMVDLLAR+G
Sbjct: 570 -------------------------EGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLV 604
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS-- 407
+ L F+ +MP + + C N +I E AARH+ +LEP LS+
Sbjct: 605 QEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLY 664
Query: 408 ---------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLY 434
+H F AGDTSH +I KL L
Sbjct: 665 AHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLI 724
Query: 435 SEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
EIK IGY +K HSEK+A+AFGLI+T P P+R+ KNLR+C
Sbjct: 725 REIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCA 784
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS KY+SK+ REII+ D+ RFH DG CSCG+YW
Sbjct: 785 DCHSAIKYISKSTG----REIILRDSNRFHRMKDGKCSCGEYW 823
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V +L+D +A+ L A F+ + ++ +V W M IT + Q G
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLM------------ITRYVQGG 228
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+E F M++ +P+ ++S +++ACA+ LG+++H VLR + T V
Sbjct: 229 CAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSC 288
Query: 302 ALISI-------QGLGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
L+ + Q + V W +LI Y +CG + N EM+ +
Sbjct: 289 GLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNE 348
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFD 368
++EP Y ++ A D
Sbjct: 349 --SIEPNHLTYSSLLKACANLSDQD 371
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 29/163 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGY 225
G+ +H L + L++D LV NSL+ Y+KC +++ A F ++ + LVSW AM +
Sbjct: 62 GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAM--AF 119
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK-LGKEI 284
L T+ G + AL M+++ ++PN +L AC + F+ G +
Sbjct: 120 CL----------TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTV 169
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G+ ++ TG GT V +LIDM+ R G
Sbjct: 170 LGFAIK------TGF---------WGTDVSVGCALIDMFARNG 197
>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 882
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 174/681 (25%), Positives = 277/681 (40%), Gaps = 188/681 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + C +LE G QVH ++ G E F +FEKMP
Sbjct: 208 FSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMP 267
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+V SW + + G+ + L + G V KAC+ +G+
Sbjct: 268 AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQ 327
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL-----------K 165
++ +M+ + + V ++DM+ K G ++ A F+ +L L +
Sbjct: 328 IHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGR 387
Query: 166 HGKEIHP-HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC----------KFSKIKQKH 214
HG+ + H ++K+ L DL VN + + K A C K + H
Sbjct: 388 HGEVLSLFHRMRKEGL--DLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSH 445
Query: 215 LVS------WNAMLAGYALGGFREE-----------ITGFTQYGDGETALEFFSRMIQTD 257
+++ W YA+ F+E +T +Q GE A++ F +M++
Sbjct: 446 VINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKG 505
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI------------- 304
++P++ LS +L AC + ++ GK++H ++++ G AL+
Sbjct: 506 LEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDAD 565
Query: 305 -SIQGLGTGSFV-WNSLI-------------DMYGR-------------------CG-AI 329
+ GL V W+++I D++ R C A
Sbjct: 566 MAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAG 625
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE---- 385
++ +YFE MK+ + ++ E Y CM+D+L RAG+ +D + + MPF+ ++A
Sbjct: 626 LVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGAL 685
Query: 386 ------PCNPDIAEHAARHLFELEPLSSG------------------------------- 408
+P++ AA LF LEP SG
Sbjct: 686 LGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVK 745
Query: 409 ------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------- 443
KVH+FI GD SH + I KL L + K GY+
Sbjct: 746 KEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRS 805
Query: 444 -KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
K + HSE+LA+AF LIST G+P+RV KNLR+C DCH KY+SK REII
Sbjct: 806 EKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIV----SREII 861
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFHHF +G CSCGDYW
Sbjct: 862 IRDINRFHHFTNGTCSCGDYW 882
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 48/248 (19%)
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL---------- 163
+ ++D + + E NA ++ ++K + A G F E +S
Sbjct: 154 ARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVN 213
Query: 164 -------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
L+ G+++H + + E D+ N+L+D Y+K +++A F K+ +V
Sbjct: 214 ACTGSRDLEAGRQVHGA-VVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVV 272
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWNA I+G +G ALE +M + + PN +LS VL ACA
Sbjct: 273 SWNAF------------ISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAG 320
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
F LG++IHG++++ FV L+DMY + G + ++ +
Sbjct: 321 AFNLGRQIHGFMVKAVADFD----------------EFVAVGLVDMYAKHGFL--DDARK 362
Query: 337 YFEMMKKE 344
F+ M +
Sbjct: 363 VFDFMPRR 370
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/324 (22%), Positives = 125/324 (38%), Gaps = 89/324 (27%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
ERN SW +M+ Y + + +F ++ G V AC+ +D G+
Sbjct: 167 ERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQ 226
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------------- 161
V+ ++ +E + ++DM+ K G +EMA+ FE+ +++
Sbjct: 227 VHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGH 286
Query: 162 ------------------------SLLKH---------GKEIHPHHLKKDDLESDLLVNN 188
S+LK G++IH +K + D V
Sbjct: 287 DHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKA-VADFDEFVAV 345
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D YAK +L A F + ++ L+ WNA+++G + G E+ L
Sbjct: 346 GLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEV------------LS 393
Query: 249 FFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
F RM + D+ N +L+ VL + A + +++H AL
Sbjct: 394 LFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH----------------ALAEK 437
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQ 330
GL + S V N LID Y +CG +
Sbjct: 438 IGLLSDSHVINGLIDSYWKCGQLD 461
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 37/176 (21%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +H H LK L +N L+ Y++CR A F +I VSW++++ Y+
Sbjct: 23 GAHLHSHLLKSGLLAG---FSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYS 79
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G + AL F M + N +L VL V + G ++H
Sbjct: 80 NNGMPRD------------ALLAFRAMRGRGVPCNEFALPVVLKCAPDV---RFGAQVHA 124
Query: 287 YVLRHHIQLSTGVGIALISIQG---------------LGTG----SFVWNSLIDMY 323
+ + V AL+++ G +G G + WN++I Y
Sbjct: 125 LAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 160/608 (26%), Positives = 254/608 (41%), Gaps = 178/608 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQ-RCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L + M + T T + Q +L L +G + H +++ G + ++G
Sbjct: 611 LFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 670
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ 103
+F+ M RN+F+W S++ Y+ G +E+ + L + EG+
Sbjct: 671 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 730
Query: 104 -ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
S GK+ + ++ EG + + C ++LS
Sbjct: 731 GMISGYAMWGCGKEALAFFAQMQQEGVMPNSASITCLLRAC---------------ASLS 775
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL+ GKEIH ++ +E D+ V +L+D Y+K LK AH F +I+ K L SWN M+
Sbjct: 776 LLQKGKEIHCLSIRNGFIE-DVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 834
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
G+A+ +G G+ A+ F+ M + + P+ I+ + +L+AC
Sbjct: 835 MGFAI------------FGLGKEAISVFNEMQKVGVGPDAITFTALLSACK--------- 873
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++G+ +G G W+YF+ M
Sbjct: 874 -------------NSGL---------IGEG----------------------WKYFDSMI 889
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIA 392
+Y + P +E YCCMVDLL RAG D+ + + MP +P + C N A
Sbjct: 890 TDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFA 949
Query: 393 EHAARHLFELEPLSSG-------------------------------------------K 409
E AA++LF+LEP +S +
Sbjct: 950 ETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQR 1009
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKL 455
VH F + + H KI +L +L SE+KK+GY+ K+ H+EKL
Sbjct: 1010 VHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKL 1069
Query: 456 ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
A+ +GLI G P+RVIKN R+C DCHS KY+S + RE+ + D RFHHF +G
Sbjct: 1070 AITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLV----KARELFLRDGVRFHHFREG 1125
Query: 516 ACSCGDYW 523
CSC D+W
Sbjct: 1126 KCSCNDFW 1133
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 35/237 (14%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G EIH +K+ + D+ + +LM+FY +C L+ A+ F ++ + WN
Sbjct: 542 GMEIHGCLIKRG-FDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWN------- 593
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-KLGKEIH 285
E I Q + +E F +M + ++ T ++ VL A GF +GKE H
Sbjct: 594 -----EAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETH 648
Query: 286 GYVLRHHIQLSTGVGIALI----------SIQGL-----GTGSFVWNSLIDMYGRCGAIQ 330
GYVLR+ VG +LI S Q + F WNSL+ Y G +
Sbjct: 649 GYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 708
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSA 384
+ R M+KE ++P + + M+ A G + L F +M E P+SA
Sbjct: 709 --DALRLLNQMEKE-GIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGVMPNSA 762
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 200/453 (44%), Gaps = 131/453 (28%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V+ +L Y++ + +A F + +K + +WNAM++GYA Q G E
Sbjct: 342 VSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYA------------QSGLTEM 389
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A+ F M+ T+ PN ++++ +L+ACAQ+ GK +H + +++ + V ALI
Sbjct: 390 AISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALID 449
Query: 306 IQG---------------LGTGSFVWNSLIDMYGRCG----------------------- 327
+ + WN++I YG G
Sbjct: 450 MYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVT 509
Query: 328 ----------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
A EG F M +Y +EP E Y CMVD+L RAGQ + L F++KM
Sbjct: 510 FLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKM 569
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEP----------------------- 404
P EP A C + ++A A+ LFEL+P
Sbjct: 570 PVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAA 629
Query: 405 ----------LS----------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
LS +G H F+ GD SHS I KL L +++++GY
Sbjct: 630 SVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQS 689
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K + HSEKLA+AFGLI+T PG+ +R+IKNLR+C DCH+ TK++S
Sbjct: 690 ETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFIS 749
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K ER I++ D RFHHF DG CSCGDYW
Sbjct: 750 KIT----ERVIVVRDANRFHHFKDGICSCGDYW 778
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/391 (20%), Positives = 145/391 (37%), Gaps = 123/391 (31%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
++KN TL +PD TYA P N LG+ +HAH +V G + F+
Sbjct: 96 LLKNTTL--------SPDN--FTYAFAISASPDDN---LGMCLHAHAVVDGFDSNLFVAS 142
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-- 101
+F+KMP+R+ W +M+ Y++ V +F ++ +GV
Sbjct: 143 ALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRL 202
Query: 102 --------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
A +E+++ +VG M I+C +++ F
Sbjct: 203 DSTTVATVLPAVAEMQEVKVG------------------------MGIQCLALKLG---F 235
Query: 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
D+ V L+ ++KC + A F I++
Sbjct: 236 HFDDY---------------------------VLTGLISVFSKCEDVDTARLLFGMIRKP 268
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
LVS+NA+ I+GF+ G+ E A+++F ++ + + ++ ++ G++ +
Sbjct: 269 DLVSYNAL------------ISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSS 316
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNS 318
L I G+ ++ L V AL +I L F WN+
Sbjct: 317 PFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNA 376
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+I Y + G + + EMM E+ P
Sbjct: 377 MISGYAQSGLTEMAISL-FQEMMTTEFTPNP 406
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 180/718 (25%), Positives = 289/718 (40%), Gaps = 219/718 (30%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--- 59
+K ++ +M L + + + Q C +L +LE G +VHA ++ G++ +L
Sbjct: 28 LKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87
Query: 60 ---------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---- 100
+F+ + +RN+ SWT+M+ + E + + G
Sbjct: 88 LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147
Query: 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+ A + + ++G+ V+ ++ E V ++ M+ KCG + A F+
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207
Query: 155 ---EKDFSNLSLL---------------------------------------------KH 166
EK+ +LL +H
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H ++ + +L V NSL+ Y KC L+ A FS + + +V+W AM+ GYA
Sbjct: 268 GKKVH-RYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF +E A+ F RM Q ++P+ ++ + VL +C+ + GK IH
Sbjct: 327 QLGFHDE------------AINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQ 374
Query: 287 YVLRHHIQLSTGVGIALISIQG----LGTGSFVWNSLID---------------MYGRCG 327
++ L + AL+S+ + S V+N + + +GRC
Sbjct: 375 QLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRC- 433
Query: 328 AIQKNEGWRYFEMMKKE-----------------------------------YNMEPAME 352
E YF+ MKK+ Y ++P +E
Sbjct: 434 ----REALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVE 489
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFEL 402
Y C VDLL RAG ++ N + MPF P SA + D+ E AA ++ +L
Sbjct: 490 HYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKL 549
Query: 403 EP--------LSS-----------------------------------GKVHSFIAGDTS 419
+P LSS GKVH F D S
Sbjct: 550 DPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKS 609
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H +I +L +L +IK++GY+ K HSE+LA+ +GL+ T
Sbjct: 610 HPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTP 669
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG P+R++KNLR+CGDCH+ TK++SK REII D RFHHF DG CSCGD+W
Sbjct: 670 PGMPIRIVKNLRVCGDCHTATKFISKVVG----REIIARDAQRFHHFADGVCSCGDFW 723
>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
Length = 635
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 172/659 (26%), Positives = 264/659 (40%), Gaps = 202/659 (30%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LCAF 58
+++ LL+ ++ E Y +RC + G ++H H+++CG + LC
Sbjct: 41 LRDAVQLLEDRSVSPSAEVLAWY---LRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNL 97
Query: 59 L--------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA 104
L +F P RNVFSWT M+ + G+Y + +NL ++ EG+
Sbjct: 98 LVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPN 157
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
SI F +E+ + LS L
Sbjct: 158 ------------------SITF-------------------IELLGA------VAALSWL 174
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G+ +H + +D+ V N L++ YAKCR L A F + + +++W A++A
Sbjct: 175 DRGRALH-RRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAA 233
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
YAL GF + AL+ F M ++P ++ V+ CA + F +G+E+
Sbjct: 234 YALNGFFRD------------ALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREV 281
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGS---------------FVWNSLIDMYGRCG-- 327
HG V+ + + VG ALI++ G WNS+I +YG+ G
Sbjct: 282 HG-VIDARSEANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYG 340
Query: 328 ------------------------------------AIQKNEGWRYFEMMKKEYNMEPAM 351
A + + + M +Y +P
Sbjct: 341 FQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTS 400
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFE 401
Q C++DLL RAG D+ F+ MP+ P A + D+ A AA +
Sbjct: 401 LQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMA 460
Query: 402 LEPLSSGK-------------------------------------------VHSFIAGDT 418
L P SG +H FIAGDT
Sbjct: 461 LRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDT 520
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLIST 464
SH +I E+L R+ I++ GY+ I A C HSE+LA+AFG+IS+
Sbjct: 521 SHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISS 580
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ LR++KNLR+C DCHS TK +SK R+II+ D RFH F +G+CSC DYW
Sbjct: 581 PGGTELRIMKNLRVCPDCHSATKIISKFSG----RKIIVRDANRFHEFRNGSCSCEDYW 635
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 162/596 (27%), Positives = 259/596 (43%), Gaps = 163/596 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEE-------IVNLFY-LLIDE----------GVY 102
+F +MP+RN FSW ++ + G+ E + LFY ++ DE V
Sbjct: 81 IFNQMPQRNCFSWNTI-----IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVL 135
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
KAC++ + GK ++ + F G+ V ++ M++ CG M+ A F + +
Sbjct: 136 KACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYK------N 189
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+++ + K+D ++++ N ++D Y + K A F K++Q+ +VSWN M+
Sbjct: 190 IIEKDMVVMTDRRKRD---GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GY+L GF ++ A+E F M + D++PN ++L VL A +++ +LG+
Sbjct: 247 SGYSLNGFFKD------------AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGE 294
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MYG 324
+H Y I++ +G ALI + W+++I+ ++G
Sbjct: 295 WLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHG 354
Query: 325 RCG-AIQ-----------------------------KNEGWRYFEMMKKEYNMEPAMEQY 354
+ G AI EG RYF M +EP +E Y
Sbjct: 355 QAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHY 414
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL R+G D+ F+ MP +P C N ++ + A L ++ P
Sbjct: 415 GCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVP 474
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
SG +H F+ D SH
Sbjct: 475 HDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHP 534
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+I+ L+ + +++ GY K HSEK+A AFGLISTSPG
Sbjct: 535 KAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPG 594
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R++KNLR+C DCHS K +SK K R+I + D RFHHF DG+CSC DYW
Sbjct: 595 KPIRIVKNLRICEDCHSSIKLISKVYK----RKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC----RYLKVAHCKFSKIKQK 213
+N ++ +IH +K + D L ++ F A R L AH F+++ Q+
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMR-DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+ SWN ++ G++ + + T F+ M ++PN + VL ACA
Sbjct: 89 NCFSWNTIIRGFSESDEDKALIAITL---------FYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ + GK+IHG L++ G G FV ++L+ MY CG ++
Sbjct: 140 KTGKIQEGKQIHGLALKY----------------GFGGDEFVMSNLVRMYVMCGFMKDAR 183
Query: 334 GWRYFEMMKKE 344
Y +++K+
Sbjct: 184 VLFYKNIIEKD 194
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 183/669 (27%), Positives = 274/669 (40%), Gaps = 203/669 (30%)
Query: 38 LELGIQVHAHLIVCGVELCAFLG---------MFEKMPERNVFSWTSMMGMYNVLGYYEE 88
L+LG+ +H++++VC L A+ +F++MP R+ ++ +MM + G + E
Sbjct: 166 LKLGL-LHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAE 224
Query: 89 IVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138
++LF + +G V + + D +G+ V+ +++ N V +LD
Sbjct: 225 ALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLD 283
Query: 139 MFIKCGRM---------------------------------------EMASGEFEEKDFS 159
+ KC + EM S F+ +
Sbjct: 284 FYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALP 343
Query: 160 NLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210
SLL GK+IH L L S+ LV N+L+D Y+KC L A F
Sbjct: 344 YASLLSVAGSVPHIGIGKQIHAQ-LVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINK 402
Query: 211 KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
K VSW AM ITG Q G E AL+ F M + + P+ + S +
Sbjct: 403 NDKTGVSWTAM------------ITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIK 450
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------QGLGT-------GSFV 315
A + + LG+++H Y++R S G AL+ + + L T S
Sbjct: 451 ASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSIS 510
Query: 316 WNSLIDMYGRCG----AIQKNEGW-----------------------------RYFEMMK 342
WN++I Y G AI+ EG +YFE+M+
Sbjct: 511 WNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELME 570
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE------PSSAEPC----NPDIA 392
EY + P E Y C++D L R G+FD + +MPFE S C N D+A
Sbjct: 571 YEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLA 630
Query: 393 EHAARHLFELEPLSSG-------------------------------------------K 409
AA LF + + K
Sbjct: 631 RVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHK 690
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---------------HSEK 454
V+SF + D ++ ++ +I ++L RLY E+ K GY K +C HSE+
Sbjct: 691 VYSFSSNDQTNPMITEIKDELERLYKEMDKQGY-KPDTSCTLQQVDDDIKLESLKYHSER 749
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+AF LI+T PG+P+RV+KNL C DCHS K +SK R+II+ D+ RFHHF D
Sbjct: 750 LAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIV----NRDIIVRDSSRFHHFKD 805
Query: 515 GACSCGDYW 523
G CSCGDYW
Sbjct: 806 GFCSCGDYW 814
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 116/306 (37%), Gaps = 50/306 (16%)
Query: 47 HLIVCGVELCAFLGMFEKMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC 105
H ++ L +F++MP RN FS M+ Y+ G +LF +
Sbjct: 42 HSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFL--------SSP 93
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
L+D + MI + +F R +A NL
Sbjct: 94 PHLRD----AVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPAS 149
Query: 166 HGK-------EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
G +HP LK L S+++V N+L+D Y K L A F ++ + V++
Sbjct: 150 GGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTY 209
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
NAM+ G + G E AL+ F+ M + + + S VL V
Sbjct: 210 NAMMMGCSKEGSHAE------------ALDLFAAMRRKGLAATRFTFSTVLTVATGVGDL 257
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
LG+++HG V R + FV NSL+D Y +C + + + +
Sbjct: 258 CLGRQVHGLVAR-----------------ATSSNVFVNNSLLDFYSKCDCLDEMKKL-FH 299
Query: 339 EMMKKE 344
EM++++
Sbjct: 300 EMIERD 305
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 161/590 (27%), Positives = 243/590 (41%), Gaps = 178/590 (30%)
Query: 52 GVELCAFLGM---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108
G+E A+ M F++M ER+ SW ++ +LG C+E
Sbjct: 114 GLESAAYESMRKVFDEMLERDAVSWNTL-----ILG--------------------CAEH 148
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K H+ + M F + VL +F +C +K G
Sbjct: 149 KRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECAD------------------IKRGM 190
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+H + +K + ++D+ V +SL+D YA C + + F V WN+MLAGYA
Sbjct: 191 VVHGYAIK-NGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYA-- 247
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G E AL F RM+Q ++P ++ S ++ A + +LGK++H Y+
Sbjct: 248 ----------QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYL 297
Query: 289 LRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYG--------- 324
+R + + +LI + G+ + V W ++I Y
Sbjct: 298 IRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAF 357
Query: 325 ------RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G ++ N GW+YF M +Y P++E + D
Sbjct: 358 VLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADT 417
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAG D+ NF+ +M +P+S+ C N +AE A+ +FELEP S G
Sbjct: 418 LGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSH 477
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
K+H FIA D SH +I
Sbjct: 478 VILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRII 537
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+ L ++ + GY+ KR CGHSEKLA+ FG+IST PG+ +RV+
Sbjct: 538 DALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVM 597
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH TK++SK REI++ D RFH F DG CSCGD+W
Sbjct: 598 KNLRVCVDCHIATKFISKIVA----REIVVRDVNRFHRFKDGNCSCGDFW 643
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 164/570 (28%), Positives = 236/570 (41%), Gaps = 165/570 (28%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F R P+ N + + ++ VE+ L F+ MP RNV +W +M+ Y G
Sbjct: 298 LFDRMPERNEVSWNAMLAGYVQGERVEMAKEL--FDVMPCRNVSTWNTMITGYAQCGKIS 355
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E NLF D +D + I + L +F+ ME
Sbjct: 356 EAKNLF----------------DKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVL---ME 396
Query: 148 MASGEFEEKDFS-------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
G FS ++ L+ GK++H L K E+ V N+L+ Y KC +
Sbjct: 397 REGGRLNRSSFSSALSTCADVVALELGKQLHGR-LVKGGYETGCFVGNALLLMYCKCGSI 455
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
+ A+ F ++ K +VSWN M+AGY+ GF GE AL FF M + ++P
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGF------------GEEALRFFESMKREGLKP 503
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ ++ VL+AC+ TG L+
Sbjct: 504 DDATMVAVLSACSH----------------------TG--------------------LV 521
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
D +G +YF M ++Y + P + Y CMVDLL RAG ++ N MK MPFE
Sbjct: 522 D-----------KGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFE 570
Query: 381 PSSA----------EPCNPDIAEHAARHLFELEPLSSG---------------------- 408
P +A N ++AE AA +F +EP +SG
Sbjct: 571 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 630
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
K H+F GD H +I L L +KK GY+ +
Sbjct: 631 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTS 690
Query: 448 AC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
HSE+LA+A+G++ S G P+RVIKNLR+C DCH+ KY++K
Sbjct: 691 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVT 750
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
R II+ DN RFHHF DG+CSCGDYW
Sbjct: 751 G----RLIILRDNNRFHHFKDGSCSCGDYW 776
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 133/341 (39%), Gaps = 80/341 (23%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F+R P+ +++ + +L EL L F++MPER++ SW M+ Y
Sbjct: 81 VFKRMPRWSSVSYNAMISGYLRNGEFELARML--FDEMPERDLVSWNVMIKGYVRNRNLG 138
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYMISIKFEGNACVKRPVLDMFI 141
+ LF + + V + L + + V+D M E N +L ++
Sbjct: 139 KARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMP----EKNDVSWNALLSAYV 194
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ ++E A F ++ N +L+ N L+ + K + +
Sbjct: 195 QNSKLEEACVLFGSRE--NWALVSW---------------------NCLLGGFVKKKKIV 231
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGD 242
A F +K + +VSWN ++ GYA G +E ++G+ Q
Sbjct: 232 EARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRM 291
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A E F RM + N +S + +LA Q + ++ KE+
Sbjct: 292 VEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKEL----------------FD 331
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
++ + + T WN++I Y +CG I +E F+ M K
Sbjct: 332 VMPCRNVST----WNTMITGYAQCGKI--SEAKNLFDKMPK 366
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+++ C + LELG Q+H L+ G E F+G +F++M
Sbjct: 406 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 465
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+++ SW +M+ Y+ G+ EE + F + EG V ACS G+
Sbjct: 466 AGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGR 525
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ DY + + AC ++D+ + G +E A
Sbjct: 526 QYFHTMTQDYGVRPNSQHYAC----MVDLLGRAGLLEEA 560
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 178/656 (27%), Positives = 259/656 (39%), Gaps = 222/656 (33%)
Query: 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVEL----------------CAFL 59
PDE +V LI C ++LELG QVH + G++ CA+
Sbjct: 282 PDEFSVQ--LILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 339
Query: 60 G--MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------------Y 102
+F M ++ SW SM+ EE VNLF L+ EG+
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAA 399
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------- 153
KAC L GK ++ + I F+ + V +LDM+IKCG M A F
Sbjct: 400 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 459
Query: 154 --------------------------------EEKDFSNL-------SLLKHGKEIHPHH 174
+E F+ L + L+ G+++H +
Sbjct: 460 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 519
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K D + SD V SL+D YAKC ++ A+ F K+ +++ WNAML G A
Sbjct: 520 IKLDCV-SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLA-------- 570
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q+G+ E A+ F M ++P+ +S G+L+AC+ H
Sbjct: 571 ----QHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS------------------HAG 608
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
L++ E + Y M +Y +EP +E Y
Sbjct: 609 LTS-----------------------------------EAYEYLHSMPNDYGIEPEIEHY 633
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
C+VD L RAG + ++ MPF+ S++ C + + + A LF LEP
Sbjct: 634 SCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEP 693
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
S +H F+ D SH
Sbjct: 694 FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHP 753
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
I +K+ + I++ GY+ K HSEKLA+A+GLIST
Sbjct: 754 QADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPAS 813
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ +RVIKNLR+CGDCH+ KY+SK EREI++ D RFHHF DG CSCGDYW
Sbjct: 814 TTIRVIKNLRVCGDCHNAIKYISKV----FEREIVLRDANRFHHFRDGVCSCGDYW 865
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 124/317 (39%), Gaps = 97/317 (30%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMM 77
+NL LG HA ++V G FL +F+ PER++ +W +++
Sbjct: 91 HNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAIL 150
Query: 78 GMYNVL-----GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACV 132
G Y G +E ++LF LL R M
Sbjct: 151 GAYAASVDSNDGNAQEGLHLFRLL---------------RASLGSTTRM----------T 185
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192
PVL + + G + A G HG I K LE D+ V+ +L++
Sbjct: 186 LAPVLKLCLNSGCLWAAEG-------------VHGYAI------KIGLEWDVFVSGALVN 226
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y+KC ++ A F ++++ +V WN ML GY G +E A + FS
Sbjct: 227 IYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKE------------AFQLFSE 274
Query: 253 MIQTDMQPNTISLSGVLAAC--AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
++ ++P+ S+ +L C A +LGK++HG ++ GL
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVK----------------SGLD 318
Query: 311 TGSFVWNSLIDMYGRCG 327
+ V NSL++MY + G
Sbjct: 319 SDVSVANSLVNMYSKMG 335
>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 216/471 (45%), Gaps = 133/471 (28%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H +K++ ++S V +L+D Y K + A F +I++K +V+W+AM+ GYA
Sbjct: 27 EMHAQAIKRNYVKSPS-VGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYA-- 83
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLGKEIHGY 287
Q GD E A+ F +M + ++PN + SG++ ACA G + GK++H +
Sbjct: 84 ----------QIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAW 133
Query: 288 VLRHHIQLSTGVGIALISI---QGLGTGSF------------VWNSLIDMYGRCGAIQK- 331
++ + V AL+++ +G +F WNS+I Y + G +K
Sbjct: 134 SIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKA 193
Query: 332 --------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
NEG RYF++M K++++EP ME Y CMVD
Sbjct: 194 LEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVD 253
Query: 360 LLARAGQFDDTLNFMKKMPFEPSS-------AEPC---NPDIAEHAARHLFELEPLSSG- 408
L RAG + + +MPF S+ A C N ++ + AA L L+P +
Sbjct: 254 LYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQPQNPAS 313
Query: 409 ------------------------------------------KVHSFIAGDTSHSLVHKI 426
K ++F+AGD SH L ++I
Sbjct: 314 YVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSHPLSNQI 373
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
KL L ++K GY K HSE+LA+AFGLI T PG+PL++
Sbjct: 374 YAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPPGTPLQI 433
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLR+CGDCHS K +S E R+I++ D+ RFHHF G CSCGDYW
Sbjct: 434 VKNLRVCGDCHSVIKLISILEG----RDIVVRDSNRFHHFKGGLCSCGDYW 480
>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 176/718 (24%), Positives = 285/718 (39%), Gaps = 221/718 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD T+ + C K+ G+QVH ++ G+ F+
Sbjct: 120 PD--NFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGR 177
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F++M ERNV SWTS++ Y+V+ +E V LF+ +++ GV AC++LK
Sbjct: 178 KVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLK 237
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------ 163
D +GK V + M + + N V +LDM++KCG M F+E NL +
Sbjct: 238 DLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMS 297
Query: 164 ------------------------------------------LKHGKEIHPHHLKKDDLE 181
L GK H + + ++ LE
Sbjct: 298 NYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAY-VFRNGLE 356
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------ 229
++N+++D Y KC + A F + K +V+WN+++AG G
Sbjct: 357 RLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEM 416
Query: 230 -------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ I Q E A++ M ++ + +++ G+ +AC + L K
Sbjct: 417 PESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAK 476
Query: 283 EIHGYVLRHHIQLSTGVGIALI----------------------------------SIQG 308
I+ Y+ ++ I + +G AL+ +++G
Sbjct: 477 WIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEG 536
Query: 309 LGTGS----------------FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G+ FV+ +L+ + G + ++G + F M+K + + P +
Sbjct: 537 NAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYV--DQGRQLFWAMEKIHGVSPQIV 594
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG ++ + MK MP +P+ C N + A +A + +L
Sbjct: 595 HYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQL 654
Query: 403 EP-------------LSSGK------------------------------VHSFIAGDTS 419
P S+GK + F +GD S
Sbjct: 655 APEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDES 714
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H+ +I L + I ++GY+ K HSEKLA+A+GLI+T
Sbjct: 715 HTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTG 774
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+RV+KNLRMC DCHS K VSK REI + DN R+H F +G CSC D+W
Sbjct: 775 KGIPIRVVKNLRMCSDCHSFAKLVSKLYG----REITVRDNNRYHFFKEGFCSCRDFW 828
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 46/167 (27%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAG-----------YALGGFREE-------------IT 235
LK HC K K + + N ++A YAL F+E+ I
Sbjct: 38 LKQLHCNMLK---KGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIR 94
Query: 236 GFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
G+ G + A+ + MI + P+ + +L+AC+++ F G ++HG V++
Sbjct: 95 GYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVK---- 150
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
GL FV NSLI Y CG + + G + F+ M
Sbjct: 151 ------------MGLVKDLFVANSLIHFYAACGKV--DLGRKVFDEM 183
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 163/628 (25%), Positives = 258/628 (41%), Gaps = 166/628 (26%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82
VT ++F R + + +H+ V+L FE+M ER+V SW +M+ YN
Sbjct: 197 VTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQV--QFEQMIERDVVSWNAMISGYNQ 254
Query: 83 LGYYEEIVNLFY-LLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
G+ E +++F +L+D AC+ L++ ++GK ++ ++I +F+
Sbjct: 255 HGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGA 314
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191
V ++ M+ K G +E+A E+ SNL D++ +L+
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNL---------------------DVIAFTALL 353
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
D Y K + A F ++ + +V+W AM+ GY GF ++ A+E F
Sbjct: 354 DGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQD------------AMELFR 401
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311
MI+ +PN +L+ +L+ + + G++IH R S V ALI++
Sbjct: 402 SMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSG 461
Query: 312 G----------------SFVWNSLIDMYGRCGAIQK------------------------ 331
+ W S+I + G ++
Sbjct: 462 SINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVL 521
Query: 332 ---------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP- 381
+G Y+ +M+ + + P Y CM+DL RAG + F++ MP EP
Sbjct: 522 SACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPD 581
Query: 382 -----SSAEPC----NPDIAEHAARHLFELEPLSSG------------------------ 408
S C N ++AE AA L +EP +SG
Sbjct: 582 VIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKS 641
Query: 409 -------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY------- 442
KVH F D H I E + +++ EIKK+G+
Sbjct: 642 MKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESV 701
Query: 443 -------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
+K HSEKLA+AFGLI T + LR++KNLR+C DCHS K++SK
Sbjct: 702 LHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVG- 760
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF +G CSC DYW
Sbjct: 761 ---REIIVRDATRFHHFKNGLCSCRDYW 785
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 127/272 (46%), Gaps = 46/272 (16%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+FE+MPE + SWT+M+ YN +G +E + +F ++ + V +C+ ++
Sbjct: 101 VFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVEC 160
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ V+ +++ V +L+M+ K G A F+ + S
Sbjct: 161 LGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSW------ 214
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N+++ + + + +A +F ++ ++ +VSWNAM++GY GF
Sbjct: 215 -----------------NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGF 257
Query: 231 REEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
E AL+ FS+M+ + +P+ +L+ L+ACA ++ KLGK+IH +++
Sbjct: 258 DRE------------ALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHII 305
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
R VG ALIS+ G + +I+
Sbjct: 306 RTEFDTFGAVGNALISMYSKSGGVEIAQKIIE 337
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK IH +K L + + N+LM+FYAK ++ AH F ++ K + SWN +L+GYA
Sbjct: 32 GKSIHARIIKAG-LHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
GG EE I G+ Q G E A+ F M+ D+ P +L+
Sbjct: 91 KGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTN 150
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VLA+CA V+ +G+++H +V++H GL + V NSL++MY + G
Sbjct: 151 VLASCAAVECLGIGRKVHSFVVKH----------------GLSSYISVANSLLNMYAKSG 194
>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
Length = 633
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 180/652 (27%), Positives = 274/652 (42%), Gaps = 201/652 (30%)
Query: 10 LQSMDLTNPDECTVT---YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------- 59
L+ +DL + E T Y I C + NL +HAHL + AFL
Sbjct: 45 LRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM 104
Query: 60 -----------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108
+F+KMP R+V SWT Y + GY + + +A L
Sbjct: 105 YCKCGAVSDARHVFDKMPSRDVVSWT-----YLIAGYAQNYMPA----------EAIGLL 149
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
D M+ +F N +L CG + G+
Sbjct: 150 PD----------MLRARFRPNGFTFTSLLKATGACGGCSI------------------GE 181
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H +K + + D+ V ++L+D YA+C + +A F ++ K+ VSWNA++AG+A
Sbjct: 182 QMHALAVKYN-WDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFA-- 238
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ DGET L F+ M + + S + +A A++ + G+ +H ++
Sbjct: 239 ----------RKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHL 288
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFV----------------WNSLID---MYG----- 324
++ +L+ VG ++ + +GS V WN+++ YG
Sbjct: 289 IKSGQKLTAFVGNTMLGMYA-KSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEA 347
Query: 325 --------RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMV 358
+CG IQ N EG YF+MMK +YN++P ++ Y V
Sbjct: 348 VAHFEEIRKCG-IQLNQITFLSVLTACSHGGLVKEGKHYFDMMK-DYNVQPEIDHYVSFV 405
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP---- 404
DLL RAG + L F+ KMP EP++A C N + ++AA H+FEL+P
Sbjct: 406 DLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTG 465
Query: 405 ---------LSSGK------------------------------VHSFIAGDTSHSLVHK 425
S+GK VH F+A D +H
Sbjct: 466 PPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGD 525
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I + IKK GY+ + HSEK+ALAF LI+ G+ +R
Sbjct: 526 IYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIR 585
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KN+R+CGDCHS KYVSK K REI++ D RFHHF +G+CSCGDYW
Sbjct: 586 IMKNIRICGDCHSAFKYVSKVFK----REIVVRDTNRFHHFSEGSCSCGDYW 633
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 163/639 (25%), Positives = 258/639 (40%), Gaps = 193/639 (30%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
L +F++MP+R++ SW S++G G Y++ V LF + EG V AC +
Sbjct: 39 LMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQS 98
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC------------------------- 143
+G V+ Y + + +LDM+ C
Sbjct: 99 HYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMI 158
Query: 144 ------GRMEMASGEFEE-----------------KDFSNLSLLKHGKEIHPHHLKKDDL 180
G + +G F+E F+ LKHGK +H + ++ + +
Sbjct: 159 TSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIR-NGI 217
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E L V N+LM+ Y KC Y++ A F + +K +SWN ++ GY+ E
Sbjct: 218 EEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANE------- 270
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A F+ M+ ++PN ++++ +L A A + + G+E+H Y +R V
Sbjct: 271 -----AFTLFNEML-LQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVA 324
Query: 301 IALISIQGLGTGSFV----------------WNSLIDMYGRCG---------------AI 329
AL+ + + G+ + W +I YG G I
Sbjct: 325 NALVDMY-VKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGI 383
Query: 330 Q------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
Q ++EGWR+F M+ E+ +EP ++ Y CMVDLL G +
Sbjct: 384 QPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAY 443
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------- 408
F++ MP EP S+ C N +AE A +FELEP ++G
Sbjct: 444 EFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAE 503
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F A + +H +I+E L + ++
Sbjct: 504 RWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQ 563
Query: 439 KIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+ G+ + CGHS KLA+AFG+++ S G P+RV KN R+C CH
Sbjct: 564 EEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHE 623
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK REII+ D+ RFHHF +G CSC YW
Sbjct: 624 AAKFISKMCG----REIILRDSNRFHHFEEGRCSCRGYW 658
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 121/275 (44%), Gaps = 49/275 (17%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+L K + V N+L+ FYAK ++ A F ++ Q+ ++SWN+++ G A G ++
Sbjct: 9 YLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDK 68
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
A+E F RM + ++ +L V+ AC Q +G +HGY +R
Sbjct: 69 ------------AVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVR--- 113
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-ME 352
TG LIS LG N+L+DMY C WR + + NME +
Sbjct: 114 ---TG----LISETSLG------NALLDMYSNC------SDWRSTNKIFR--NMEQKNVV 152
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI-AEHAARHLFE-LEPLSSGK- 409
+ M+ RAG FD ++M E PD+ A +A F E L GK
Sbjct: 153 SWTAMITSYTRAGHFDKVAGLFQEMGL-----EGIRPDVFAITSALDAFAGNESLKHGKS 207
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMK 444
VH + + ++ ++ LM +Y K GYM+
Sbjct: 208 VHGYAIRNGIEEVL-PVANALMEMYV---KCGYME 238
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 183/696 (26%), Positives = 285/696 (40%), Gaps = 208/696 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------L 59
P+E +++ + C L + G +H +LI G + F +
Sbjct: 256 PNEFSLSS--MVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+FEK+ + ++ SW +++ + ++E+ + L + G+ KAC+ +
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME---MASGEFEEKD--------- 157
+G+ ++ ++ + E + V ++DM+ KC +E MA EKD
Sbjct: 374 LKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIIS 433
Query: 158 -----FSNLSLLKHGKEIHP-----------------------------HHLK-KDDLES 182
+ ++ L E+H H L K S
Sbjct: 434 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHS 493
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NSL+D Y KC +++ A F + LVS+ +M+ YA QYG
Sbjct: 494 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA------------QYGQ 541
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE AL+ F M +++P+ S +L ACA + F+ GK++H ++L++ L G +
Sbjct: 542 GEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNS 601
Query: 303 LI-------SIQGLGT--------GSFVWN------------------------------ 317
L+ SI G G W+
Sbjct: 602 LVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPN 661
Query: 318 --SLIDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+L+ + G C A E YFE M++ + +P E Y CM+DLL RAG+ ++ + +
Sbjct: 662 HITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELV 721
Query: 375 KKMPFEPSS--------AEPCNPDI--AEHAARHLFELEPLSSG---------------- 408
KMPFE ++ A + D+ AA LF LEP SG
Sbjct: 722 NKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWE 781
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
KV++F+ GD SH +I KL L + K G
Sbjct: 782 NVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAG 841
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K + HSEKLA+AFGLI+T G+P+RV KNLR+C DCH+ K
Sbjct: 842 YVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFK 901
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y+ K REII+ D RFHHF DG+CSCGDYW
Sbjct: 902 YICKI----VSREIIVRDINRFHHFKDGSCSCGDYW 933
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 101/404 (25%), Positives = 167/404 (41%), Gaps = 109/404 (26%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------- 54
T +L +D N +V+Y+ + +C +L G+Q+HAH+ G+
Sbjct: 39 QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98
Query: 55 ----LCAFLGMFEKM----PERNVFSWTSMMGMY--NVLG------YYEEIVNLFYLLID 98
C G K+ E ++ SW++++ Y N LG ++E ++L + +
Sbjct: 99 NLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHE--MHLLGVKCN 156
Query: 99 E----GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM-------- 146
E V KACS +KD R+GK V+ ++ FEG+ V ++ M+ KC
Sbjct: 157 EFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFD 216
Query: 147 -------------------------------EMASGEFEEKDFSNLSLLK---------H 166
EM + +FS S++
Sbjct: 217 EIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSR 276
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK IH + L K + D N+L+D YAK L A F KIKQ +VSWNA++AG
Sbjct: 277 GKIIHGY-LIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCV 335
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
L E+ ALE +M ++ + PN +LS L ACA + +LG+++H
Sbjct: 336 LHEHHEQ------------ALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHS 383
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+++ ++ + FV L+DMY +C ++
Sbjct: 384 SLMKMDME----------------SDLFVSVGLVDMYSKCDLLE 411
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L +Q M+L PD + L C L+ E G Q+H H++ G L F G
Sbjct: 550 LEMQDMEL-KPDRFVCSSLL--NACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMY 606
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
F ++ ER + SW++M+G G+ + + LF ++ EGV
Sbjct: 607 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 658
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 160/633 (25%), Positives = 272/633 (42%), Gaps = 176/633 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ + C L +L LG +H ++I G++ ++++ ++M MY+ L + E
Sbjct: 112 VLKSCALLMDLNLGESLHGYIIRVGLDF-------------DLYTGNALMNMYSKLRFLE 158
Query: 88 EI--------------------VNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
E V +L ++ V K + + KD+ + I
Sbjct: 159 ESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPE----KDLVSWNTIIAGN 214
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL---------KHGKEIHPHHLKKD 178
+ L M EM + F+ S+L GKEIH +++
Sbjct: 215 ARNGLYEETLRMI-----REMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG 269
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L++D+ V +SL+D YAKC + + F+ + ++ +SWN+++AG G +E
Sbjct: 270 -LDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDE----- 323
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
L FF +M+ ++P + S S ++ ACA + LGK++HGY+ R+ +
Sbjct: 324 -------GLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 376
Query: 299 VGIALISIQG----LGTGSFV-----------WNSLI---DMYGRC-GAIQ--------- 330
+ +L+ + + T + W ++I ++G+ AI+
Sbjct: 377 IASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEG 436
Query: 331 -------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+E W+YF M +++ + P +E Y + DLL RAG+ ++ +F+ M
Sbjct: 437 IKAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGM 496
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P+ + C N D+AE A + E++P ++G
Sbjct: 497 HIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAA 556
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
KV++F+AGD SH KI E + L ++K GY+
Sbjct: 557 KWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVP 616
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K+ C HSE+LA+ FG+I+T G +RV KNLR+C DCH+ TK++S
Sbjct: 617 DTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFIS 676
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI++ DN RFHHF +G CSCGDYW
Sbjct: 677 KIVG----REIVVRDNSRFHHFKNGTCSCGDYW 705
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
++ I +T +G +L F M+ + + P+ VL +CA + LG+ +HGY+
Sbjct: 73 AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYI 132
Query: 289 LRHHIQLSTGVGIALISI------------QGLGTGSFVWNSLIDM---YGRCGAIQKNE 333
+R + G AL+++ Q LG G V++ + + + ++
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE-VFDEMTERTRSVRTVSVLSEDS 191
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ FEMM E + + ++ AR G +++TL +++M
Sbjct: 192 VRKIFEMMP-----EKDLVSWNTIIAGNARNGLYEETLRMIREM 230
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 166/634 (26%), Positives = 269/634 (42%), Gaps = 164/634 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
+L M L VT I CP+L ++ + +H ++I G+E
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF------------- 349
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD---VYDYMISIK 125
++F +++ MY G E+ F + V S + + D + + + ++
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G +P L + +AS + +D K+ + +H +++ L D++
Sbjct: 410 LNG----FQPDLLTLV-----SLASIVAQSRD------CKNSRSVHGFIMRRGWLMEDVV 454
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+++D YAK L AH F I K ++SWN ++ GYA G E
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASE------------ 502
Query: 246 ALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+E + M + ++ PN + +L A A V + G +IHG V++ ++ L V LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLI 562
Query: 305 SIQG---------------LGTGSFVWNSLIDMYGRCGAIQKN----------------- 332
+ G S WN++I +G G +K
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG F +M+ EY ++P+++ Y CMVDLL RAG + +F+K
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKD 681
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MP +P ++ C N ++ + A+ LFE++ + G
Sbjct: 682 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 741
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
KV F G+ SH +I E+L L +++K +GY+
Sbjct: 742 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSE+LA+AFG+IST P SP+R+ KNLR+CGDCH+ TK++
Sbjct: 802 PDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFI 861
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S R +REI++ D+ RFHHF DG CSCGDYW
Sbjct: 862 S----RITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 108/374 (28%)
Query: 44 VHAHLIVCG-----------VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGY 85
+HA L+V G V L A LG F+++P+++V++W SM+ Y G+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197
Query: 86 YEEIVNLFY--LLIDE---------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ E + FY LL+ E V KAC L D G+ ++ + + F+ N V
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 254
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKHGK------------------ 168
++ M+ + G +A F++ F ++ L+++G
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314
Query: 169 ---------EIHPH------------HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
+ P ++ K LE DL V+N+L++ YAK L+ A F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ +VSWN+++A Y Q D TA FF +M QP+ ++L
Sbjct: 375 QQMFITDVVSWNSIIAAY------------EQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ + AQ + K + +HG+++R + V + N+++DMY + G
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV---------------IGNAVVDMYAKLG 467
Query: 328 AIQKNEGWRYFEMM 341
+ + + FE++
Sbjct: 468 LL--DSAHKVFEII 479
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ ++ L++ YA + ++ C F +I QK + +WN+M++ Y G E G
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGC------ 204
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
F+ ++ ++++P+ + VL AC + G++IH + + Q + V +L
Sbjct: 205 -----FYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASL 256
Query: 304 I------SIQGLGTGSF---------VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
I G+ F WN++I G IQ + +++ E +E
Sbjct: 257 IHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS-----GLIQNGNAAQALDVL-DEMRLE 310
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFM 374
+ +V +L Q D M
Sbjct: 311 GIKMNFVTVVSILPVCPQLGDISTAM 336
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 180/676 (26%), Positives = 272/676 (40%), Gaps = 208/676 (30%)
Query: 39 ELGIQVHAHLIVCGVELCAFLGM------------------FEKMPERNVFSWTSMMGMY 80
EL +HA + G E AF+G F+ + +++ SWT M+ Y
Sbjct: 58 ELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACY 117
Query: 81 NVLGYYEEIVNLFYLL----------IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA 130
+++ + LF + GV KAC L+ VGK V+ ++ +E +
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEE----------------------------------- 155
V +LD++ K G FEE
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237
Query: 156 ----KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
F+ S+L+ GK++H H LK L+ ++ V+N+LMD YAKC L
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVG-LDGNVFVSNALMDVYAKCGRLDN 296
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ F ++ ++ V+WN M+ GY Q GDG+ AL + M++ +Q +
Sbjct: 297 SMKLFMELPNRNEVTWNTMIVGY------------VQSGDGDKALSLYKNMLECQVQASE 344
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV--- 315
++ S VL ACA + +LG +IH L+ VG ALI + + V
Sbjct: 345 VTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDM 404
Query: 316 --------WNSLIDMYGRCGAI----------QKNE-----------------------G 334
WN++I Y G + Q+ E G
Sbjct: 405 LSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIG 464
Query: 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC- 387
YF+ M ++Y +EP ME Y CMV LL R+G D + ++++P EP+ C
Sbjct: 465 QNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACV 524
Query: 388 ---NPDIAEHAARHLFELEPL--------------------------------------- 405
+ D+ +A+ + +++P
Sbjct: 525 IHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGL 584
Query: 406 ----SSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------------ 449
+ G VH F GDTSH + IS L L + +K GY+ + A
Sbjct: 585 SWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRH 644
Query: 450 --GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
HSE+LALAFGLI T +R++KNLR+C DCHS K +SK +R+II+ D
Sbjct: 645 LWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKI----VQRDIIIRDMN 700
Query: 508 RFHHFVDGACSCGDYW 523
RFHHF DG CSCGDYW
Sbjct: 701 RFHHFQDGICSCGDYW 716
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 177/635 (27%), Positives = 274/635 (43%), Gaps = 188/635 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
++ + C L +L G H V G E F+ +F+++
Sbjct: 1144 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 1203
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-YDYMISI 124
P RNV SWTSM + GY + LL+ + + +E++D G +V D ++
Sbjct: 1204 PLRNVVSWTSM-----ITGYVQNEQADNALLLFKDFLEEETEVED---GNNVPLDSVV-- 1253
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
++ + C R+ SG+ ++ HG + K + +
Sbjct: 1254 -----------MVSVLSACSRV---SGK-------GITEGVHG------FVVKKGFDGSI 1286
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+LMD YAKC V+ F +++K +SWN+M+A YA G E
Sbjct: 1287 GVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE----------- 1335
Query: 245 TALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
ALE F M++ ++ N ++LS VL ACA + GK IH V++ ++ + VG ++
Sbjct: 1336 -ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394
Query: 304 ISIQ------GLGTGSF---------VWNSLIDMYGRCG---------------AIQKN- 332
I + + +F W +++ YG G ++ N
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 1454
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EGW +F MK +Y++EP +E Y CMVDL RAG ++ N +K
Sbjct: 1455 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 1514
Query: 376 KMPFEP------SSAEPC----NPDIAEHAARHLFELEP--------LSS---------- 407
+M +P S C N D+ E AA+ LFEL+P LS+
Sbjct: 1515 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 1574
Query: 408 -------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
G+VH F+ GD H I + L +L E++KIGY
Sbjct: 1575 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 1634
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ K I HSEKLA+AFG+++++PG+ + +IKNLR+CGDCH+ K
Sbjct: 1635 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 1694
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK R+ ++ D+ RFHHF DG CSCGDYW
Sbjct: 1695 ISKLV----HRDFVVRDSKRFHHFKDGVCSCGDYW 1725
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 124/311 (39%), Gaps = 70/311 (22%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K +N + GK +H L K D+ V N+L+DFY KC + + A F K++
Sbjct: 130 FVIKACTNFLSIDLGKVVH-GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRV 188
Query: 213 KHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRM 253
+++VSW +++G G +E I G+ + E ALE F RM
Sbjct: 189 RNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRM 248
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++ PN ++ ++ AC ++ LG+ IH Y +++ I++ +G ALI + GS
Sbjct: 249 QAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS-KCGS 307
Query: 314 F----------------VWNSLIDMYGRCGAIQK-------------------------- 331
WNS+I G G Q+
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367
Query: 332 -------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
EG YF M + Y + P E Y CM +L AR+ D+ K++ +S
Sbjct: 368 CVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSP 427
Query: 385 EPCNPDIAEHA 395
C A+ A
Sbjct: 428 SICFDARAKQA 438
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
T+ + + C +++LG VH LI G F L +FEKM
Sbjct: 127 TFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
RNV SWT+++ G +E +F D K+V + I
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIF----------------DEIPSKNVVSWTAMIN 230
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDLE 181
L++F + + E+ K + + +L G+ IH + +K + +E
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIE 289
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ + +L+D Y+KC +K A F + +K L +WN+M IT +G
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM------------ITSLGVHG 337
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
G+ AL FS M + +++P+ I+ GVL AC +K K G
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 31/185 (16%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
N KH ++IH + + L +D L+ L+ Y+ + A F +I+ +
Sbjct: 34 LQNCKNFKHLRQIHAK-IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN ++ + G E+ AL + M+ + + + V+ AC
Sbjct: 93 WNLIIRANTINGLSEQ------------ALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
LGK +HG ++++ G FV N+LID Y +CG +
Sbjct: 141 IDLGKVVHGSLIKY----------------GFSGDVFVQNNLIDFYFKCG--HTRFALKV 182
Query: 338 FEMMK 342
FE M+
Sbjct: 183 FEKMR 187
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 174/639 (27%), Positives = 268/639 (41%), Gaps = 178/639 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
LLQ + P ++YA +FQ LN L+LG QVHAH+++ G++ A +G
Sbjct: 58 LLQPLSAPGPPP-ILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVG-------- 108
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLID----EGVYKACSELKDHRVGKDVYDYMISI 124
+ M+ Y G + V++F + D V K+ EL +GK V+ ++ I
Sbjct: 109 -----SKMVAFYASSGDIDSSVSVFNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRI 163
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
+ + V ++ ++ KCG + A K F N+++ D+
Sbjct: 164 GLQFDLYVATSLIILYGKCGEINDAG-----KVFDNMTI------------------RDV 200
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
N+L+ Y K + A F ++ +++VSW M++GY +Q G +
Sbjct: 201 SSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY------------SQSGLAQ 248
Query: 245 TALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M++ D ++PN +++ VL ACAQ+ + G++IH R + + V IA
Sbjct: 249 QALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIA 308
Query: 303 LISIQGLGTGSFV------------------WNSLIDMYGRCG---------------AI 329
L ++ GS V WN++I Y G I
Sbjct: 309 LTAMYA-KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 367
Query: 330 QKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
Q ++ G +YF M Y++ P +E Y C+ DLL RAG+ +
Sbjct: 368 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 427
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------- 408
+ +MP + C N ++AE AAR LF LEP ++G
Sbjct: 428 KLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAG 487
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F+ GDTSH +I L L ++K
Sbjct: 488 RWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMK 547
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY K HSEKLA+AFG+++T + LRV KNLR+CGDCH+
Sbjct: 548 AAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHT 607
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++S+ RE+I+ D RFHHF G CSCGDYW
Sbjct: 608 AMVFISEIYG----REVIVRDINRFHHFKGGCCSCGDYW 642
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 158/604 (26%), Positives = 253/604 (41%), Gaps = 166/604 (27%)
Query: 47 HLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
H+ V ++L + FE+M ER++ +W SM+ +N GY +++F ++ +
Sbjct: 222 HMQVGQMDLA--MAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279
Query: 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
V AC+ L+ +GK ++ ++++ F+ + V ++ M+ +CG +E A E+
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
+ +L + +L+D Y K + A F +K + +
Sbjct: 340 RGTKDLKIEGF---------------------TALLDGYIKLGDMNQAKNIFVSLKDRDV 378
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W AM+ GY Q+G A+ F M+ +PN+ +L+ +L+ + +
Sbjct: 379 VAWTAMIVGYE------------QHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSL 426
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG----------------SFVWNSL 319
GK+IHG ++ S V ALI++ + W S+
Sbjct: 427 ASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSM 486
Query: 320 IDMYGRCGAIQK---------------------------------NEGWRYFEMMKKEYN 346
I + G ++ N+G +YF+MMK
Sbjct: 487 IIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDK 546
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAA 396
+ P + Y CMVDL RAG + F++KMP EP S C N D+ + AA
Sbjct: 547 IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAA 606
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
L LEP +SG KVH F
Sbjct: 607 ERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVF 666
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAF 459
D +H ++I + +++ EIKK+GY+ + HSEKLA+AF
Sbjct: 667 GVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAF 726
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLIST + LR++KNLR+C DCH+ K++SK REII+ D RFHHF DG CSC
Sbjct: 727 GLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVG----REIIVRDTTRFHHFKDGFCSC 782
Query: 520 GDYW 523
DYW
Sbjct: 783 RDYW 786
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 70/329 (21%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
C F F+++P+R+ SWT+M+ Y +G Y + + + ++ EG V +
Sbjct: 100 CEF---FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASV 156
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
+ + GK V+ +++ + GN V +L+M+ KCG MA F+ ++S
Sbjct: 157 AATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW- 215
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
N+++ + + + +A +F ++ ++ +V+WN+M
Sbjct: 216 ----------------------NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM---- 249
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEI 284
I+GF Q G AL+ FS+M++ + P+ +L+ VL+ACA ++ +GK+I
Sbjct: 250 --------ISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI 301
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
H ++ ++TG I+ I V N+LI MY RCG ++ ++++
Sbjct: 302 HSHI------VTTGFDISGI----------VLNALISMYSRCGGVETAR-----RLIEQR 340
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+ +E + ++D + G + N
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNI 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H +K + S L+NN LM+ Y+K Y A F ++ + SWN +L+ Y+ G
Sbjct: 36 VHCRVIKSGLMFSVYLMNN-LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94
Query: 230 -------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ I G+ G A+ M++ ++P +L+ VLA
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ A + + GK++H ++++ GL V NSL++MY +CG
Sbjct: 155 SVAATRCMETGKKVHSFIVK----------------LGLRGNVSVSNSLLNMYAKCG 195
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 183/709 (25%), Positives = 276/709 (38%), Gaps = 213/709 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ +S T PD VT+ + C QVHA + G + FL
Sbjct: 136 MCRSSSCTLPDH--VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193
Query: 61 ------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------- 100
+FE++PE++ ++ +++ Y G Y E ++LF + G
Sbjct: 194 YCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253
Query: 101 --VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------ 146
V KA L D +G+ ++ ++ F +A V +LD + K R+
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 147 ---------------------------EMASGEFEEKDF---------SNLSLLKHGKEI 170
EM F+ ++F +NLS L+ G+++
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L +S L V NSL+D YAKC + A F + Q+ VSW A+++GY G
Sbjct: 374 HCQALLAT-ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGL 432
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+G G L+ F++M ++++ + + + VL A A LGK++H +++R
Sbjct: 433 ---------HGAG---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI-------DMYGRCGA 328
+ G L+ + + + WN+LI D GA
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540
Query: 329 IQK--------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
K +G YF+ M Y + P + Y CM+DLL
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---- 408
R G+F + M +MPFEP S C N +AE AA LF +E L
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+H F + D +H +I
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ L +EI++ GY MK HSE+LA+AF LIST G P+ V+K
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMK 780
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR C DCH+ K +SK K REI + D RFHHF +G CSCGDYW
Sbjct: 781 NLRACRDCHAAIKLISKIVK----REITVRDTSRFHHFSEGVCSCGDYW 825
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/368 (19%), Positives = 132/368 (35%), Gaps = 93/368 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
++ P N + + H+ V + +F+ MP+R V +WT +MG Y +++
Sbjct: 70 VYDEMPHKNTVSTNTMISGHVKTGDVS--SARDLFDAMPDRTVVTWTILMGWYARNSHFD 127
Query: 88 EIVNLFY--------LLIDEGVYKA----CSELKDHRVGKDVYDYMISIKFEGNA--CVK 133
E LF L D + C++ V+ + + + F+ N V
Sbjct: 128 EAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVS 187
Query: 134 RPVLDMFIKCGRMEMASGEFEE-------------------------------------- 155
+L + + R+++A FEE
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247
Query: 156 -KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
DF+ +LK G+++H + D V N ++DFY+K +
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTT-GFSRDASVGNQILDFYSKHDRVLETRM 306
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F ++ + VS+N +++ Y +Q E +L FF M
Sbjct: 307 LFDEMPELDFVSYNVVISSY------------SQADQYEASLHFFREMQCMGFDRRNFPF 354
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+ +L+ A + ++G+++H L L+T I V NSL+DMY +
Sbjct: 355 ATMLSIAANLSSLQMGRQLHCQAL-----LATADSIL-----------HVGNSLVDMYAK 398
Query: 326 CGAIQKNE 333
C ++ E
Sbjct: 399 CEMFEEAE 406
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 176/635 (27%), Positives = 273/635 (42%), Gaps = 188/635 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
++ + C L +L G H V G E F+ +F+++
Sbjct: 2017 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 2076
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-YDYMISI 124
P RNV SWTSM + GY + LL+ + + +E++D G +V D ++
Sbjct: 2077 PLRNVVSWTSM-----ITGYVQNEQADNALLLFKDFLEEETEVED---GNNVPLDSVV-- 2126
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
++ + C R+ SG+ ++ HG + K + +
Sbjct: 2127 -----------MVSVLSACSRV---SGK-------GITEGVHG------FVVKKGFDGSI 2159
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+LMD YAKC V+ F +++K +SWN+M+A YA G E
Sbjct: 2160 GVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGE----------- 2208
Query: 245 TALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
ALE F M++ ++ N ++LS VL ACA + GK IH V++ ++ + VG ++
Sbjct: 2209 -ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267
Query: 304 ISIQ------GLGTGSF---------VWNSLIDMYGRCGAIQK----------------- 331
I + + +F W +++ YG G ++
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EGW +F MK +Y++EP +E Y CMVDL RAG ++ N +K
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387
Query: 376 KMPFEP------SSAEPC----NPDIAEHAARHLFELEP--------LSS---------- 407
+M +P S C N D+ E AA+ LFEL+P LS+
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 2447
Query: 408 -------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
G+VH F+ GD H I + L +L E++KIGY
Sbjct: 2448 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 2507
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ K I HSEKLA+AFG+++++PG+ + +IKNLR+CGDCH+ K
Sbjct: 2508 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 2567
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK R+ ++ D+ RFHHF DG CSCGDYW
Sbjct: 2568 ISKLV----HRDFVVRDSKRFHHFKDGVCSCGDYW 2598
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 70/306 (22%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+N + GK +H L K D+ V N+L+DFY KC + + A F K++ +++VSW
Sbjct: 136 TNFLSIDLGKVVH-GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSW 194
Query: 219 NAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQ 259
+++G G +E I G+ + E ALE F RM ++
Sbjct: 195 TTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIF 254
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----- 314
PN ++ ++ AC ++ LG+ IH Y +++ I++ +G ALI + GS
Sbjct: 255 PNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS-KCGSIKDAIE 313
Query: 315 -----------VWNSLIDMYGRCGAIQK-------------------------------- 331
WNS+I G G Q+
Sbjct: 314 VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKN 373
Query: 332 -NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
EG YF M + Y + P E Y CM +L AR+ D+ K++ +S C
Sbjct: 374 VKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDA 433
Query: 391 IAEHAA 396
A+ A
Sbjct: 434 RAKQVA 439
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 51/280 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
T+ + + C +++LG VH LI G F L +FEKM
Sbjct: 127 TFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKM 186
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
RNV SWT+++ G +E +F D K+V + I
Sbjct: 187 RVRNVVSWTTVISGLISCGDLQEARRIF----------------DEIPSKNVVSWTAMIN 230
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDLE 181
L++F + + E+ K + + +L G+ IH + +K + +E
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIE 289
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ + +L+D Y+KC +K A F + +K L +WN+M IT +G
Sbjct: 290 IGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSM------------ITSLGVHG 337
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
G+ AL FS M + +++P+ I+ GVL AC +K K G
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 29/170 (17%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
N KH ++IH + + L +D L+ L+ Y+ + A F +I+ +
Sbjct: 34 LQNCKNFKHLRQIHAK-IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFT 92
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN ++ + G E+ AL + M+ + + + V+ AC
Sbjct: 93 WNLIIRANTINGLSEQ------------ALMLYKNMVCQGIAADKFTFPFVIKACTNFLS 140
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
LGK +HG ++++ G FV N+LID Y +CG
Sbjct: 141 IDLGKVVHGSLIKY----------------GFSGDVFVQNNLIDFYFKCG 174
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 174/652 (26%), Positives = 270/652 (41%), Gaps = 199/652 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKM 65
TY + Q C + LE G +VH H+ G L +F++M
Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P R++ SW M+ Y +G EE LF + ++ Y + + + V KD + + +
Sbjct: 147 PNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGY-VKKDQPEEALVLY 205
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
L + R + + + + ++ GKEIH H + + L+SD +
Sbjct: 206 ----------SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH-IVRAGLDSDEV 254
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +SLMD Y KC + A F KI +K +VSW +M+ Y E GF+
Sbjct: 255 LWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE--GFS------- 305
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
FS ++ + +PN + +GVL ACA + +LGK++HGY+ R
Sbjct: 306 ---LFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR--------------- 347
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI-----------------------------QKNEGWR 336
G SF +SL+DMY +CG I Q +E +
Sbjct: 348 -VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALK 406
Query: 337 YFEMMKK-----------------------------------EYNMEPAMEQYCCMVDLL 361
YF+++ K ++ + + Y C+VDLL
Sbjct: 407 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLL 466
Query: 362 ARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP------- 404
AR+G+F+ + + +MP +PS + N D+AE AA+ LF++EP
Sbjct: 467 ARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYV 526
Query: 405 ------LSSGK------------------------------VHSFIAGDTSHSLVHKISE 428
++GK H FIA DTSH + ++I E
Sbjct: 527 TMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVE 586
Query: 429 KLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLR 471
L L ++K+ GY +PA HSEKLA+AF ++ST G+ ++
Sbjct: 587 FLRELRKKMKEEGY---VPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 643
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V KNLR C DCH K++S K R+I + D+ RFH F +G CSCGDYW
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITK----RKITVRDSTRFHCFENGQCSCGDYW 691
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 169/613 (27%), Positives = 257/613 (41%), Gaps = 146/613 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C LE G Q+HAH I + AF+ +FE
Sbjct: 140 TWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELA 199
Query: 66 PE-RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
P+ RN WT+M+ Y+ G + + F + EG+ AC + G
Sbjct: 200 PDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFG 259
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------LSLLKH 166
V+ ++ F N V ++DM+ KCG + A E + + + ++
Sbjct: 260 AQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQ 319
Query: 167 G---------KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
G + +H H+K D+ LVNN+L+D YAK Y A F K+ K ++S
Sbjct: 320 GLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS 379
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W ++ +TG G E AL F M + P+ I ++ VL+A
Sbjct: 380 WTSL------------VTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDN--- 424
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
+ Y I+ + V + IQ + T W +LI G Q G Y
Sbjct: 425 ----SLVSMYAKCGCIEDANKV-FDSMEIQDVIT----WTALI-----VGYAQNGRGRDY 470
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F+ M++ Y ++P E Y CM+DLL R+G+ + + +M +P + C
Sbjct: 471 FQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHG 530
Query: 388 NPDIAEHAARHLFELEPLS----------------------------------------- 406
N ++ E AA +LFELEP +
Sbjct: 531 NVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWI 590
Query: 407 --SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACG 450
S KVH F++ D SH +I K+ + IK+ GY+ K +
Sbjct: 591 EMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAY 650
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFGL++ PG+P+R+ KNLR+CGDCH+ KYVS R +I+ D+ FH
Sbjct: 651 HSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGV----FHRHVILRDSNCFH 706
Query: 511 HFVDGACSCGDYW 523
HF +GACSC DYW
Sbjct: 707 HFREGACSCSDYW 719
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 155/406 (38%), Gaps = 117/406 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F + P R+ +W+S++ Y G E + LF+ + EG V + CS
Sbjct: 94 LFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVL 153
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK ++ + I +F+ NA V ++DM+ KC
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKC--------------------------- 186
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
K LE++ L + + K+ H++ W AM+ GY
Sbjct: 187 ------KCILEAEYLF-------------------ELAPDKRNHVL-WTAMVTGY----- 215
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+Q GDG A+E F M ++ N + +L AC + G ++HG ++R
Sbjct: 216 -------SQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVR 268
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
G G FV ++L+DMY +CG + R E M+ + +P
Sbjct: 269 ----------------SGFGANVFVGSALVDMYSKCGDLSNAR--RMLETMEVD---DPV 307
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFE---------PSSAEPCNPDIAEHAARHLFE 401
+ M+ R G ++ L+ + M PS N + +A R F+
Sbjct: 308 --SWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVN--NALVDMYAKRGYFD 363
Query: 402 -----LEPLSSGKVHSFIAGDTSHSLVHKIS-EKLMRLYSEIKKIG 441
E ++ V S+ + T VH S E+ +RL+ E++ +G
Sbjct: 364 YAFDVFEKMTDKDVISWTSLVT--GCVHNGSYEEALRLFCEMRIMG 407
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 35/166 (21%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------------- 233
+N ++ +KC + A F + + SWN M+ YA G E
Sbjct: 44 SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103
Query: 234 ------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+G+ +YG ALE F M +PN + VL C+ + GK+IH +
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++ + +FV L+DMY +C I + E
Sbjct: 164 AIKTQFD----------------SNAFVVTGLVDMYAKCKCILEAE 193
>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
Length = 877
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 176/690 (25%), Positives = 278/690 (40%), Gaps = 208/690 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + C N+E G QVHA ++ G + F +FEKMP
Sbjct: 205 FSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP 264
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+ +V SW +++ + G+ + L + G + KACS +G+
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQ 324
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIK----------------------------C---GR 145
++ +MI + + + ++DM+ K C GR
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384
Query: 146 MEMASGEFEE-----------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
+ A F E K ++L +++H +K + D V N
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI-FDAHVVN 443
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y KC L A+ F + +++ +M IT +Q GE A++
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSM------------ITALSQCDHGEGAIK 491
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F M++ ++P+ LS +L ACA + ++ GK++H ++++ G AL+
Sbjct: 492 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 551
Query: 305 ---SIQGLG--------TGSFVWNSLI-------------DMYGR--------------- 325
SI+ G W+++I +++GR
Sbjct: 552 KCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611
Query: 326 --CG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
C A +E RYF MK+ + ++ E Y CM+DLL RAG+ DD + + MPF+
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671
Query: 381 P----------SSAEPCNPDIAEHAARHLFELEPLSSG---------------------- 408
+S +P++ + AA LF LEP SG
Sbjct: 672 ANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVR 731
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH+FI GD SH + +I KL+ L + K G++
Sbjct: 732 KLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVD 791
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K + HSE+LA+AF L+ST PG+P+RV KNLR+C DCH K++SK
Sbjct: 792 VDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIV 851
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSCGDYW
Sbjct: 852 ----SREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 152/397 (38%), Gaps = 111/397 (27%)
Query: 21 CTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLGMF--------- 62
C +AL + +C + + LG QVHA + G L A G F
Sbjct: 100 CCNEFALPVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157
Query: 63 --EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
E ERN SW +M Y + + +F ++ G V AC+ ++
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
G+ V+ ++ + ++ + ++DM++K GR+++AS FE+ S++
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277
Query: 162 ------------------------------SLLKH---------GKEIHPHHLKKDDLES 182
S+LK G++IH +K + +S
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA-NADS 336
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + L+D YAK +L A F + + L+ NA+++G + GG +E
Sbjct: 337 DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDE--------- 387
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F + + + N +L+ VL + A ++ +++H ++
Sbjct: 388 ---ALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK------------ 432
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
G + V N LID Y +C + ++ R FE
Sbjct: 433 ----IGFIFDAHVVNGLIDSYWKCSCL--SDANRVFE 463
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 76/276 (27%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
C +F+++P+ SW+S++ Y+ G + F+ + EGV C+E V K
Sbjct: 54 CCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV--CCNEFALPVVLK 111
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V D + + M MA+G
Sbjct: 112 CVPDARLGAQVHA-----------------MAMATG------------------------ 130
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEI 234
SD+ V N+L+ Y ++ A F++ +++ VSWN +++ Y
Sbjct: 131 ----FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN------ 180
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q GD A++ F M+ + +QP S V+ AC + + G+++H V+R
Sbjct: 181 ---DQCGD---AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR---- 230
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G F N+L+DMY + G +
Sbjct: 231 ------------MGYDKDVFTANALVDMYMKMGRVD 254
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +H LK L S N L+ FY+KCR A F +I VSW+++
Sbjct: 23 GAHLHASLLKSGSLAS---FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSL----- 74
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+T ++ G +A++ F M + N +L VL V +LG ++H
Sbjct: 75 -------VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVH- 123
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
A+ G G+ FV N+L+ MYG G + ++ R F E N
Sbjct: 124 ---------------AMAMATGFGSDVFVANALVAMYGGFGFM--DDARRVFNEADSERN 166
>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Vitis vinifera]
Length = 681
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 182/694 (26%), Positives = 269/694 (38%), Gaps = 209/694 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
T A + Q K L G Q+HA LI G C FL +F+
Sbjct: 5 TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLF----------YLLIDEGVYKACSELKDHRV 113
MP+RN+ SWT+M+ + + E + F +AC+ L +
Sbjct: 65 TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMAS--------------- 150
GK ++ + V + DM+ KCG M EM
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184
Query: 151 -GEFEEKDFS------------------------NLSLLKHGKEIHPHHLKKDDLESDLL 185
GEFEE + L K G+ +H +K ESD+
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG-FESDIF 243
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+L D Y+K ++ A F + +++VS+ ++ GY E+I E
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE---TEQI---------E 291
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
L F + + ++PN + S ++ ACA + G ++H V++ + V L+
Sbjct: 292 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILV 351
Query: 305 SIQG--------------LGTGS-FVWNSLIDMYGRCG---------------AIQKN-- 332
+ G +G + WNSL+ ++G+ G ++ N
Sbjct: 352 DMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAI 411
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG YF M K Y + P E Y C++DLL RAG+ + F+ +
Sbjct: 412 TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471
Query: 377 MPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG------------------ 408
MPFEP++ C + ++ + AA L +LEP +SG
Sbjct: 472 MPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDV 531
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
K H F A D SH I EKL L +IK GY+
Sbjct: 532 RSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV 591
Query: 444 KRIPACG--------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
R + HSE++A+AF LIS G P+ V KNLR+C DCHS K++
Sbjct: 592 PRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFI 651
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK R+II+ DN RFHHF DG+CSCGDYW
Sbjct: 652 SKVTG----RKIIVRDNSRFHHFTDGSCSCGDYW 681
>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
Length = 877
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 176/690 (25%), Positives = 278/690 (40%), Gaps = 208/690 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + C N+E G QVHA ++ G + F +FEKMP
Sbjct: 205 FSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP 264
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+ +V SW +++ + G+ + L + G + KACS +G+
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQ 324
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIK----------------------------C---GR 145
++ +MI + + + ++DM+ K C GR
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGR 384
Query: 146 MEMASGEFEE-----------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
+ A F E K ++L +++H +K + D V N
Sbjct: 385 HDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFI-FDAHVVN 443
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y KC L A+ F + +++ +M IT +Q GE A++
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSM------------ITALSQCDHGEGAIK 491
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F M++ ++P+ LS +L ACA + ++ GK++H ++++ G AL+
Sbjct: 492 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 551
Query: 305 ---SIQGLG--------TGSFVWNSLI-------------DMYGR--------------- 325
SI+ G W+++I +++GR
Sbjct: 552 KCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611
Query: 326 --CG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
C A +E RYF MK+ + ++ E Y CM+DLL RAG+ DD + + MPF+
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671
Query: 381 P----------SSAEPCNPDIAEHAARHLFELEPLSSG---------------------- 408
+S +P++ + AA LF LEP SG
Sbjct: 672 ANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVR 731
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH+FI GD SH + +I KL+ L + K G++
Sbjct: 732 KLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVD 791
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K + HSE+LA+AF L+ST PG+P+RV KNLR+C DCH K++SK
Sbjct: 792 VDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIV 851
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSCGDYW
Sbjct: 852 ----SREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 84/397 (21%), Positives = 152/397 (38%), Gaps = 111/397 (27%)
Query: 21 CTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLGMF--------- 62
C +AL + +C + + LG QVHA + G L A G F
Sbjct: 100 CCNEFALPVVLKC--VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157
Query: 63 --EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
E ERN SW +M Y + + +F ++ G V AC+ ++
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
G+ V+ ++ + ++ + ++DM++K GR+++AS FE+ S++
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277
Query: 162 ------------------------------SLLKH---------GKEIHPHHLKKDDLES 182
S+LK G++IH +K + +S
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKA-NADS 336
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + L+D YAK +L A F + + L+ NA+++G + GG +E
Sbjct: 337 DDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDE--------- 387
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F + + + N +L+ VL + A ++ +++H ++
Sbjct: 388 ---ALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVK------------ 432
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
G + V N LID Y +C + ++ R FE
Sbjct: 433 ----IGFIFDAHVVNGLIDSYWKCSCL--SDANRVFE 463
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 103/276 (37%), Gaps = 76/276 (27%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
C F+++P+ SW+S++ Y+ G + F+ + EGV C+E V K
Sbjct: 54 CCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV--CCNEFALPVVLK 111
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V D + + M MA+G
Sbjct: 112 CVPDARLGAQVHA-----------------MAMATG------------------------ 130
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEI 234
SD+ V N+L+ Y ++ A F++ +++ VSWN +++ Y
Sbjct: 131 ----FGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN------ 180
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q GD A++ F M+ + +QP S V+ AC + + G+++H V+R
Sbjct: 181 ---DQCGD---AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVR---- 230
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G F N+L+DMY + G +
Sbjct: 231 ------------MGYDKDVFTANALVDMYMKMGRVD 254
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +H LK L S N L+ FY+KCR A F +I VSW+++
Sbjct: 23 GAHLHASLLKSGSLAS---FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSL----- 74
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+T ++ G +A++ F M + N +L VL V +LG ++H
Sbjct: 75 -------VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVH- 123
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
A+ G G+ FV N+L+ MYG G + ++ R F E N
Sbjct: 124 ---------------AMAMATGFGSDVFVANALVAMYGGFGFM--DDARRVFNEADSERN 166
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 178/633 (28%), Positives = 268/633 (42%), Gaps = 168/633 (26%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL 95
+N LGI++ VCG E + +F+++P++NV + M+ Y Y + + +F
Sbjct: 1058 SNPSLGIKLMRAYAVCG-EPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKN 1116
Query: 96 LIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
+ G V KA S +D VG ++ ++ + + N V ++ M+ KCG
Sbjct: 1117 MAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 1176
Query: 146 MEMASGEFEE---KDFSNLSLLKHG--------------KEIHPHHLKKD-DLESDLL-- 185
+ A +Z +D + + L G KE+ LK D + LL
Sbjct: 1177 LVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 1236
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+ +D + + + F K+ K LVSWN M+A Y E
Sbjct: 1237 VTNTCLDNVSFVKEM------FMKLANKSLVSWNVMIAVYMNNSMPAE------------ 1278
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F +M + P+ IS++ VL AC + LG+ IH YV+R +Q + + ALI
Sbjct: 1279 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALID 1338
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQK------------------- 331
+ Q W S+I YG G +
Sbjct: 1339 MYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIA 1398
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+EG YF++M +E + P +E + CMVDLL RAGQ D+ F+K+M
Sbjct: 1399 FVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM 1458
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P EP+ C N I AA LF+L P SG
Sbjct: 1459 PMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVT 1518
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMK 444
+VH+F+AGD SH +I E+L L ++K+ GY+
Sbjct: 1519 TVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVP 1578
Query: 445 RIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
+ HSEKLA+AF +++T+PGSP+R+ KNLR+CGDCH K +S
Sbjct: 1579 ETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLIS 1638
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI + D RFHHF +G CSCGDYW
Sbjct: 1639 KIVG----REITIRDTNRFHHFYNGVCSCGDYW 1667
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 87/216 (40%), Gaps = 39/216 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+K+ K++H DL S+ + LM YA C F +I +K++V +N M+
Sbjct: 1040 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 1099
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y Y D AL F M + P+ + VL A + + +G +
Sbjct: 1100 SYVNNHL---------YSD---ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQ 1147
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
IH V+R GL FV N LI MYG+CG + E R + M
Sbjct: 1148 IHAAVVR----------------VGLDLNVFVGNGLISMYGKCGCLV--EACRVLDZM-- 1187
Query: 344 EYNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKM 377
P + + +V AR GQFDD L K+M
Sbjct: 1188 -----PCRDVVSWNSLVAGCARNGQFDDALEVCKEM 1218
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 176/658 (26%), Positives = 271/658 (41%), Gaps = 171/658 (25%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--- 60
K V ++ + T+ Y+ + C + LELG +VHAH F+
Sbjct: 69 KRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRL 128
Query: 61 ---------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC 105
+F++M R++ SW +M+ Y LG E+ LF
Sbjct: 129 LDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLF------------ 176
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE-----FEEKDFSN 160
D +D + + +I R L++F R E +S +
Sbjct: 177 ----DEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAA 232
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
+ L+ GKEIH + L + +L D +V ++L+D Y KC L A F ++K + +VSW
Sbjct: 233 IPCLRLGKEIHGY-LIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTT 291
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ G REE GF + D ++Q+ ++PN + +GVL ACA L
Sbjct: 292 MIHRCFEDGRREE--GFLLFRD----------LMQSGVRPNEYTFAGVLNACADHAAEHL 339
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV---------------WNSLIDMYGR 325
GKE+HGY++ + AL+ + + V W SLI Y +
Sbjct: 340 GKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQ 399
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G + ++G YF +K+++ + +
Sbjct: 400 NGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTAD 459
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFEL 402
Y C++DLLAR+G+F + N + MP +P S C N ++A+ AA+ L+E+
Sbjct: 460 HYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEI 519
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
EP + +VH F+ GDTS
Sbjct: 520 EPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTS 579
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H I E L L +IK+ GY+ K HSEKLA+ FG+IST
Sbjct: 580 HPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTP 639
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG+P++V KNLR C DCH+ KY+SK +R+I + D+ RFH F DG+CSC DYW
Sbjct: 640 PGTPIKVFKNLRTCVDCHTAIKYISKIV----QRKITVRDSNRFHCFEDGSCSCKDYW 693
>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 684
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 169/659 (25%), Positives = 278/659 (42%), Gaps = 199/659 (30%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSEL 108
L +F+K+PE ++ +WT ++ + G+ ++ ++++ L+ V KAC+
Sbjct: 31 LYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAAS 90
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD-------- 157
D V K ++D I F + + ++DMF KC + A F++ KD
Sbjct: 91 GDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMT 150
Query: 158 ---------------FSNLSL--------------------LKHGKEIHPHHLKKDDLES 182
F + L +K G+E+H L+ +++E
Sbjct: 151 YCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILR-NEMEG 209
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY--------ALGGF---R 231
++ V+++L++ YA LK A F + + +VSWN ML Y LG F R
Sbjct: 210 NVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMR 269
Query: 232 EE------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
+E I+G Q G E AL +M + ++PN I++ L C ++ +
Sbjct: 270 KEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLR 329
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLI---D 321
GKEIHGYV RH + AL+ + L F WN++I
Sbjct: 330 GGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANS 389
Query: 322 MYGRCG------------AIQKN------------------EGWRYFEMMKKEYNMEPAM 351
M+G+ G ++ N EG F M E+++ P
Sbjct: 390 MHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDA 449
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFE 401
+ Y CMVD+L+RAG+ ++ +F++KMP EP++A N ++ AA LFE
Sbjct: 450 DHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFE 509
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
+EP ++G KV+SF+ GD
Sbjct: 510 IEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDK 569
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
S+ I L + +++ GY + C HSE+LA+AFG++++
Sbjct: 570 SNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNS 629
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S + +RV KNLR+CGDCH+ K ++K +II+ D+ RFHHF DG C+C D+W
Sbjct: 630 SGKTTVRVFKNLRICGDCHNAIKLIAKIVG----MQIIVRDSLRFHHFRDGYCTCNDFW 684
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 28/127 (22%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
LK A F KI + L +W +++G+ TQ+G + A++ +S ++ +++
Sbjct: 27 LKRALYLFDKIPEPDLRTWTILISGH------------TQHGFPKKAIDIYSTLLSRNVR 74
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
P+ L V ACA + K+IH ++ G + N+L
Sbjct: 75 PDKFVLLSVAKACAASGDLVVAKKIHDDAIQF----------------GFNKDLVLGNAL 118
Query: 320 IDMYGRC 326
IDM+G+C
Sbjct: 119 IDMFGKC 125
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 176/708 (24%), Positives = 290/708 (40%), Gaps = 198/708 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLN-NLELGIQVHAHLIVCGVELCA---------- 57
++Q D + E +F RC ++ L +++ + C + A
Sbjct: 163 MVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDH 222
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
L +F+ MPER+V SW M+ + G E +++ + +GV AC+
Sbjct: 223 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 282
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLS---- 162
L R GK ++ +I + V +++++ K G + A G F D +N++
Sbjct: 283 LSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVL 342
Query: 163 ---LLKHG----------------------------------------KEIHPHHLKKDD 179
L++G +++H LK
Sbjct: 343 ISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQ 402
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----FREEIT 235
+++ ++V+NSL+ YAKC L+ A F + +K +VSW +M+ Y+ G RE
Sbjct: 403 IQA-VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 461
Query: 236 G---------------FTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFK 279
G + Q+G E L + M+ + ++P+ ++ + CA + K
Sbjct: 462 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 521
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYG 324
LG +I G ++ + + T V A+I++ L V WN++I Y
Sbjct: 522 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 581
Query: 325 RCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAM 351
+ G ++ EG YF+MMK+ +N+ P +
Sbjct: 582 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 641
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E + CMVDLL RAG + + + MP +P++ C N ++AE AA+H+FE
Sbjct: 642 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 701
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
L+ SG KVH F A D
Sbjct: 702 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 761
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---HSEKLALAFGLISTSPGSPLRVIKN 475
SH V I +KL L +I ++GY++ HSEKLA+AFGL++ P+ ++KN
Sbjct: 762 SHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKN 821
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ K +S RE ++ D RFHHF G+CSCGDYW
Sbjct: 822 LRICGDCHTVIKLISTVTG----REFVIRDAVRFHHFNGGSCSCGDYW 865
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 128/325 (39%), Gaps = 71/325 (21%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS 72
MD+ +P+ +T+ ++ KL L ++ +F +MP R+V S
Sbjct: 64 MDIAHPN--VITHNVMLNGYAKLGRLSDAVE-----------------LFGRMPARDVAS 104
Query: 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYM 121
W ++M Y Y + F + G K+C L H + + +
Sbjct: 105 WNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMV 164
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+ ++ V ++DMF++CG +++AS F E
Sbjct: 165 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK-----------------------E 201
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ NS++ Y K + A F + ++ +VSWN M ++ +Q G
Sbjct: 202 PTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM------------VSALSQSG 249
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ M ++ ++ + + L ACA++ + GK++H V+R+ + V
Sbjct: 250 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 309
Query: 302 ALISIQGLGTGSF-----VWNSLID 321
AL+ + +G F V+NSL D
Sbjct: 310 ALVELYA-KSGCFKEAKGVFNSLHD 333
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 36/205 (17%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L D +++ +N +++ YAK L A F ++ + + SWN +++GY F+
Sbjct: 62 LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGY----FQSR- 116
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
QY +LE F M ++ D PN +L+ + +C + L ++ V +
Sbjct: 117 ----QY---LVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDS 169
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
Q + V A L+DM+ RCGA+ R F +K EP M
Sbjct: 170 QDDSEVAAA----------------LVDMFVRCGAVDLAS--RLFVRIK-----EPTMFC 206
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMP 378
M+ + D L MP
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMP 231
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 244/592 (41%), Gaps = 164/592 (27%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID-----------EGVYKACSE 107
+ MFE M ER++ SW +++ YN G + F ++ V AC+
Sbjct: 433 VSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACAN 492
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
L+ ++GK ++ Y++ ++ + ++ + K G +E A ++ ++L+++
Sbjct: 493 LRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISF- 551
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+L++ Y K K A F + + +++W AM+ GY
Sbjct: 552 --------------------TALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGY-- 589
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
Q G + A+E F MI +PN+ +L+ VL+ACA + GK+IH
Sbjct: 590 ----------HQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCK 639
Query: 288 VLRHHIQLSTGVGIALISIQGLGTG----------------SFVWNSLIDMYGRCGAIQK 331
+R + S V A+I++ + W S+I + G ++
Sbjct: 640 AIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQ 699
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
++G RY+E M+ E+ + P M Y CMV
Sbjct: 700 AVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMV 759
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DL ARAG + F+++MP P + C N D+AE AA L ++P +SG
Sbjct: 760 DLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSG 819
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
KVH F A D H
Sbjct: 820 AYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDS 879
Query: 426 ISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLR 471
I K ++ EIKK G++ + + HSEKLA+AFGLIST + LR
Sbjct: 880 IYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLR 939
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+C DCH+ K++SK +REII+ D RFHHF DG CSC DYW
Sbjct: 940 IMKNLRVCNDCHTAIKFISKFV----DREIIVRDATRFHHFRDGYCSCKDYW 987
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 62/281 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F +MP+R+ SWT M+ N G + + V F ++ EG V +C+ ++
Sbjct: 303 VFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEA 362
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
VG+ V+ +++ + V VL M+ KCG E A FE ++S
Sbjct: 363 CGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSW------ 416
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N ++ Y +++A F + ++ +VSWN ++AGY G
Sbjct: 417 -----------------NVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGL 459
Query: 231 REEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
DG AL+FFSRM+ + M+P+ +++ VL+ACA ++ K+GK++H Y+L
Sbjct: 460 -----------DG-MALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYIL 507
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
R G+ S + N+LI Y + G+++
Sbjct: 508 R----------------TGMPCSSQIMNALISTYAKSGSVE 532
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 35/190 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ YAK L AH F+++ + VSW M I G + G A+
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIM------------IVGLNRSGRFWDAV 332
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F M+ P+ +L+ VL++CA ++ +G+++H +V++ + LS+ V +A
Sbjct: 333 KTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVK--LGLSSCVPVA----- 385
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
NS++ MYG+CG + FE M+ ++ + MV L G+
Sbjct: 386 ---------NSVLYMYGKCGDAETARA--VFERMQVR-----SVSSWNVMVSLYTHQGRM 429
Query: 368 DDTLNFMKKM 377
+ ++ + M
Sbjct: 430 ELAVSMFENM 439
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 181/678 (26%), Positives = 261/678 (38%), Gaps = 216/678 (31%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN ++ I C L + +VH + I G F+G
Sbjct: 259 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 318
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F M ++V SW +M+ Y+ G +E LF ++ + DV
Sbjct: 319 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF------------KNMRKENIPLDV 366
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------KDFSNLSLLKHGKE 169
+ I L++F R + SG ++L G E
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLF----RQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 422
Query: 170 IHPHHLKK------DDL---ESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSW 218
IH + LK +D + DL+V N+L+D Y+KCR K A F I +++++V+W
Sbjct: 423 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 482
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVK 276
M+ G+A QYGD AL+ F MI + PN ++S +L ACA +
Sbjct: 483 TVMIGGHA------------QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 530
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI------- 329
++GK+IH YVLRHH S+ FV N LIDMY +CG +
Sbjct: 531 AIRIGKQIHAYVLRHHRYESSAY--------------FVANCLIDMYSKCGDVDTARHVF 576
Query: 330 ----------------------QKNEGWRYFEMMKKEYNMEPAME--------QYCCMVD 359
+ +E F+ M+K + + +C MVD
Sbjct: 577 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 636
Query: 360 ---------------------------LLARAGQFDDTLNFMKKMPFEPSSA------EP 386
LLAR+G+ D +K MP EP++
Sbjct: 637 QGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696
Query: 387 C----NPDIAEHAARHLFELEPLSSGK--------------------------------- 409
C N ++AEHA L E+ + G
Sbjct: 697 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 756
Query: 410 ----------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
SF GD SH L +I L L IK +GY+ K
Sbjct: 757 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 816
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLALA+GL++TSPG P+R+ KNLR+CGDCHS Y+SK + EI++ D
Sbjct: 817 NLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIV----DHEIVVRD 872
Query: 506 NYRFHHFVDGACSCGDYW 523
RFHHF +G+CSCG YW
Sbjct: 873 PSRFHHFKNGSCSCGGYW 890
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 179/449 (39%), Gaps = 113/449 (25%)
Query: 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL 92
P ++ LG V A + CG A L + P V+ W ++ + G + +N+
Sbjct: 84 PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINV 142
Query: 93 FYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
++ G V KAC EL +R G + + FE N + ++ M+ +
Sbjct: 143 SCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 202
Query: 143 CGRMEMASGEFEEKD-----------------------------FSNLSLLKH------- 166
CG +E AS F+E FS ++L+ H
Sbjct: 203 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 262
Query: 167 ---------------------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
KE+H + ++ D+ V N+L+D YAKC ++ A
Sbjct: 263 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP-DVFVGNALIDAYAKCGLMENAVK 321
Query: 206 KFSKIKQKHLVSWNAMLAGYALGG-----------FREE------------ITGFTQYGD 242
F+ ++ K +VSWNAM+AGY+ G R+E I G++Q G
Sbjct: 322 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 381
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGI 301
AL F +MI + PN +++ VL+ACA + F G EIH Y L++ + L G
Sbjct: 382 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG- 440
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ----YCCM 357
G V+N+LIDMY +C R F+ + ++ P E+ + M
Sbjct: 441 ------GEDEDLMVYNALIDMYSKC---------RSFKAARSIFDDIPLEERNVVTWTVM 485
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
+ A+ G +D L +M EP P
Sbjct: 486 IGGHAQYGDSNDALKLFVEMISEPYGVAP 514
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 184/696 (26%), Positives = 283/696 (40%), Gaps = 197/696 (28%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
PD T+ + + + C L NL++ + V ++ +E FL F+KM ER++ +WT
Sbjct: 175 ARPDNYTLPF--VIRACRDLKNLQMAL-VDMYVKCREIEDARFL--FDKMQERDLVTWTV 229
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHRVGKDVYDYMISIK 125
M+G Y G E + LF + +EGV AC++L + + DY+ K
Sbjct: 230 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 289
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHGKEIHPHHLKKDDL-- 180
F+ + + ++DM+ KCG +E A F EEK+ + S + H K DL
Sbjct: 290 FQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 349
Query: 181 ------------------------------------------ESDLLVNNSLMDFYAKCR 198
+L+V N L+ FY+ R
Sbjct: 350 MMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYR 409
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYA--------LGGFREEITGFTQ--------YGD 242
L A+ F + + VSW+ M+ G+A G FRE I + G+
Sbjct: 410 ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGN 469
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+L F +M + + P+ +++ V+ ACA++ + I Y+ R QL +G A
Sbjct: 470 ANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA 529
Query: 303 LISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK---------------- 331
+I + W+++I YG G +K
Sbjct: 530 MIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPN 589
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG R+F +M ++Y++ ++ Y C+VDLL RAG+ D+ L +
Sbjct: 590 KITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLI 649
Query: 375 KKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG---------------- 408
+ M E A + D+ AE AA L EL+P + G
Sbjct: 650 ESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWE 709
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
K H F GDT+H +I E L L ++++ +G
Sbjct: 710 DVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVG 769
Query: 442 Y--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y +K HSEKLA+AFGLI+T +P+R+IKNLR+CGDCH+ K
Sbjct: 770 YVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCK 829
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VS R II+ D RFHHF +GACSCGDYW
Sbjct: 830 LVSAITG----RVIIVRDANRFHHFKEGACSCGDYW 861
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 23/186 (12%)
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
N L +++H LE +++V N L+ FY+ R L A+ F + + VSW+
Sbjct: 90 NCRNLTQVRQVHAQASVHGMLE-NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWS 148
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
M+ G+A + GD F +I+ +P+ +L V+ AC +K +
Sbjct: 149 VMVGGFA------------KVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ 196
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQKNEGWRYF 338
+ + YV I+ A + V W +I Y CG + NE F
Sbjct: 197 MAL-VDMYVKCREIE------DARFLFDKMQERDLVTWTVMIGGYAECG--KANESLVLF 247
Query: 339 EMMKKE 344
E M++E
Sbjct: 248 EKMREE 253
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 182/634 (28%), Positives = 267/634 (42%), Gaps = 177/634 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM 77
P+ T+ L+ C + N+L G+ VH L+ G++ +L T ++
Sbjct: 70 PNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLA-------------TKLI 116
Query: 78 GMYNVLGYYEEIVNLF------YLLIDEGVYKACSELKDHRVGKDV---YDYMISIKFEG 128
MY LG + +F + + +++A L G+D+ Y M I
Sbjct: 117 NMYCDLGSVDHACKVFDETREKTIFVWNAIFRA---LAMASRGEDLLVLYGQMNWIGIPS 173
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL--LKHGKEIHPHHLKKDDLESDLLV 186
N VL + S LS+ L+ GKEIH H L+ E + V
Sbjct: 174 NRFTYTYVLKACV----------------VSELSICPLRKGKEIHAHILRHG-YEGHVHV 216
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D YA+ Y+ A F + K++VSW+AM+A YA + E+ A
Sbjct: 217 MTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYA----KNEMP--------MKA 264
Query: 247 LEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
LE F M+ D PN I++ VL ACA + + GK +H YVLR + + V LI
Sbjct: 265 LELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLI 324
Query: 305 SIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQ--------------- 330
++ G + TG V WNSLI +YG G AIQ
Sbjct: 325 TMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYI 384
Query: 331 --------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
E FE M +Y + P ME Y CMVD+L RA + D+ + ++
Sbjct: 385 TFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQN 444
Query: 377 MPFEP----------SSAEPCNPDIAEHAARHLFELEPLSSG------------------ 408
M F+P S CN ++AE A+ LFELEP ++G
Sbjct: 445 MDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDV 504
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
K++S ++ + + + ++ L+ L +EIK GY+
Sbjct: 505 RRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYV 564
Query: 444 KRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+ GHS KLA+AFGLI+TS G +R+ NLR+C DCH+ K+V
Sbjct: 565 PQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFV 624
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK REI++ D RFH F DG CSCGDYW
Sbjct: 625 SKFTN----REILLRDVNRFHCFKDGVCSCGDYW 654
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 42/185 (22%)
Query: 8 LLLQSMD-LTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------- 53
++L++ D + NP +T + Q C L LE G VHA+++ G+
Sbjct: 271 MMLEACDTVPNP----ITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITM 326
Query: 54 -----ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----- 103
E+ +F+ M +R+V SW S++ +Y + G ++ + +F +I+ GV
Sbjct: 327 YGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITF 386
Query: 104 -----ACSELKDHRVGKDVYD-----YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
ACS K +++ Y I + E AC ++D+ + R++ A
Sbjct: 387 ITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYAC----MVDILGRANRLDEAIELI 442
Query: 154 EEKDF 158
+ DF
Sbjct: 443 QNMDF 447
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 175/704 (24%), Positives = 280/704 (39%), Gaps = 209/704 (29%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL---------------- 55
+M+ N D VT ++ ++LELG QVH + G++
Sbjct: 894 NMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 953
Query: 56 CAFLG--MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYK 103
CA+ +F M ++ SW SM+ EE VNLF L+ EG V +
Sbjct: 954 CAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLR 1013
Query: 104 ACSELKDH-RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
ACS L D + + ++ + + ++ V ++D++ K G+ME A F+ KD +L+
Sbjct: 1014 ACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLA 1073
Query: 163 ------------------------------------------------LLKHGKEIHPHH 174
LL GK+IH H
Sbjct: 1074 CWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHA 1133
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K +SDL VN+ ++D Y KC + A F+ I V+W +M I
Sbjct: 1134 IKAG-FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSM------------I 1180
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+G G+ + AL + RM Q+ + P+ + + ++ A + V + G+++H V++
Sbjct: 1181 SGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV 1240
Query: 295 LSTGVGIALISI--------------QGLGTGSF-VWNSLIDMYGRCGAIQK-------- 331
VG +L+ + + + + +WN+++ + G ++
Sbjct: 1241 SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM 1300
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
+E + Y M +Y +EP +E Y C+VD L RAG
Sbjct: 1301 KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 1360
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------- 409
+ ++ MPF+ S++ C + + + A LF LEP S
Sbjct: 1361 VQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNI 1420
Query: 410 ------------------------------------VHSFIAGDTSHSLVHKISEKLMRL 433
+H F+ D SH I +K+ +
Sbjct: 1421 YAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEM 1480
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
I++ GY+ K HSEKLA+A+GLIST + +RVIKNLR+C
Sbjct: 1481 MKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVC 1540
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ KY+SK EREI++ D RFHHF DG CSCGDYW
Sbjct: 1541 GDCHNAIKYISKV----FEREIVLRDANRFHHFRDGVCSCGDYW 1580
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 134/346 (38%), Gaps = 83/346 (23%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMG 78
NL LG HA ++V G FL +F+ PER++ +W +++G
Sbjct: 636 NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695
Query: 79 MYNVL-----GYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGKDVYDYMIS 123
Y G +E ++LF LL V K C + V+ Y I
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD----------FSNLSLLKHG--- 167
I E + V +++++ KCGRM A F+ E+D + L L K
Sbjct: 756 IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 815
Query: 168 -KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL----KVAHCKFS-KIKQKHLVSWNAM 221
E H L+ D+ L++N + + ++L + K S + WN
Sbjct: 816 FSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWN-- 873
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++++ GD A+E F M ++ + ++L VLAA A +LG
Sbjct: 874 ----------KKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELG 923
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
K++HG ++ GL + V NSL++MY + G
Sbjct: 924 KQVHGIAVK----------------SGLDSDVSVANSLVNMYSKMG 953
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D ++N+L+ Y+KC L A F ++ LV+WNA+L YA + + G+
Sbjct: 655 DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA-------ASVDSNDGN 707
Query: 243 GETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ L F R+++ + T ++L+ VL C + +HGY ++
Sbjct: 708 AQEGLHLF-RLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK----------- 755
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GL FV +L+++Y +CG ++
Sbjct: 756 -----IGLEWDVFVSGALVNIYSKCGRMR 779
>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
Length = 977
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 147/473 (31%), Positives = 216/473 (45%), Gaps = 134/473 (28%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
LS G+ +H +K + D+ V +S++D YAKC + A F ++ +++VSW+
Sbjct: 23 LSRCDIGQSVHSFAVKTG-YDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSG 81
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ GY +Q G+ E AL F + + D+ N + S V+ C +L
Sbjct: 82 MIYGY------------SQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLEL 129
Query: 281 GKEIHGYVLRHHIQLSTGVGIALIS-------------------IQGLGTGSFVWNSLI- 320
GK+IHG L+ S+ VG +LIS I+ LG +WN+++
Sbjct: 130 GKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLG----MWNAMLI 185
Query: 321 ------------DMYGR----------------------CGAIQKNEGWRYFEMMKKEYN 346
D++ + G ++K G YFE+MK EY
Sbjct: 186 ACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEK--GQFYFELMK-EYG 242
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+EP + Y MVDLL RAG+ D ++ +KKMP EP+ + C + ++A A
Sbjct: 243 IEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELASFVA 302
Query: 397 RHLFELEPLSSG--------------------------------KVHSFIAGDTSHSLVH 424
+FEL P+SS ++H+F AGD SH
Sbjct: 303 DRVFELGPVSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPYTK 362
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
I +KL L E+++ GY+ K HSE+LA+AFGLIS P P+
Sbjct: 363 DIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPERPI 422
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR+CGDCH+ K++SK R II+ DN RFH F DG CSC DYW
Sbjct: 423 RVMKNLRVCGDCHTAIKFMSKCCG----RTIIVRDNNRFHRFEDGNCSCRDYW 471
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 28/162 (17%)
Query: 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVF 71
+ C L+ ++G VH+ + G + F+G MF++MP+RNV
Sbjct: 18 KACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVV 77
Query: 72 SWTSMMGMYNVLGYYEEIVNLF-YLLIDE---------GVYKACSELKDHRVGKDVYDYM 121
SW+ M+ Y+ +G EE + LF LI++ V + C +GK ++
Sbjct: 78 SWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLC 137
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+ ++ ++ V ++ ++ KCG +E A F E NL +
Sbjct: 138 LKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGM 179
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 176/708 (24%), Positives = 290/708 (40%), Gaps = 198/708 (27%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLN-NLELGIQVHAHLIVCGVELCA---------- 57
++Q D + E +F RC ++ L +++ + C + A
Sbjct: 183 MVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDH 242
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
L +F+ MPER+V SW M+ + G E +++ + +GV AC+
Sbjct: 243 ALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACAR 302
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLS---- 162
L R GK ++ +I + V +++++ K G + A G F D +N++
Sbjct: 303 LSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVL 362
Query: 163 ---LLKHG----------------------------------------KEIHPHHLKKDD 179
L++G +++H LK
Sbjct: 363 ISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQ 422
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----FREEIT 235
+++ ++V+NSL+ YAKC L+ A F + +K +VSW +M+ Y+ G RE
Sbjct: 423 IQA-VVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFD 481
Query: 236 G---------------FTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFK 279
G + Q+G E L + M+ + ++P+ ++ + CA + K
Sbjct: 482 GMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANK 541
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYG 324
LG +I G ++ + + T V A+I++ L V WN++I Y
Sbjct: 542 LGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYS 601
Query: 325 RCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAM 351
+ G ++ EG YF+MMK+ +N+ P +
Sbjct: 602 QHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGL 661
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E + CMVDLL RAG + + + MP +P++ C N ++AE AA+H+FE
Sbjct: 662 EHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFE 721
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
L+ SG KVH F A D
Sbjct: 722 LDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDV 781
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---HSEKLALAFGLISTSPGSPLRVIKN 475
SH V I +KL L +I ++GY++ HSEKLA+AFGL++ P+ ++KN
Sbjct: 782 SHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKN 841
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ K +S RE ++ D RFHHF G+CSCGDYW
Sbjct: 842 LRICGDCHTVIKLISTVTG----REFVIRDAVRFHHFNGGSCSCGDYW 885
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 128/325 (39%), Gaps = 71/325 (21%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS 72
MD+ +P+ +T+ ++ KL L ++ +F +MP R+V S
Sbjct: 84 MDIAHPN--VITHNVMLNGYAKLGRLSDAVE-----------------LFGRMPARDVAS 124
Query: 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYM 121
W ++M Y Y + F + G K+C L H + + +
Sbjct: 125 WNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMV 184
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+ ++ V ++DMF++CG +++AS F E
Sbjct: 185 QKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIK-----------------------E 221
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ NS++ Y K + A F + ++ +VSWN M ++ +Q G
Sbjct: 222 PTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMM------------VSALSQSG 269
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ M ++ ++ + + L ACA++ + GK++H V+R+ + V
Sbjct: 270 RVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVAS 329
Query: 302 ALISIQGLGTGSF-----VWNSLID 321
AL+ + +G F V+NSL D
Sbjct: 330 ALVELYA-KSGCFKEAKGVFNSLHD 353
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 36/205 (17%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L D +++ +N +++ YAK L A F ++ + + SWN +++GY F+
Sbjct: 82 LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGY----FQSR- 136
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
QY +LE F M ++ D PN +L+ + +C + L ++ V +
Sbjct: 137 ----QY---LVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDS 189
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
Q + V A L+DM+ RCGA+ R F +K EP M
Sbjct: 190 QDDSEVAAA----------------LVDMFVRCGAVDLAS--RLFVRIK-----EPTMFC 226
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMP 378
M+ + D L MP
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMP 251
>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
Length = 485
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 144/483 (29%), Positives = 211/483 (43%), Gaps = 134/483 (27%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F+ L+ G+ +H + LE D++V +L++ Y KC+ ++ A F KI + ++VS
Sbjct: 20 FTTPGSLEEGRRVH-SRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVS 78
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM--IQTDMQPNTISLSGVLAACAQV 275
W+AMLA YA Q G ALE + M + M PN ++ +L AC+ +
Sbjct: 79 WSAMLAAYA------------QNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFL 126
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLI 320
G++IH V V AL++ G LG V W+S+I
Sbjct: 127 GALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMI 186
Query: 321 DMYGRCGAIQK---------NEGW------------------------RYFEMMKKEYNM 347
+ + G + + +EG +F + + +
Sbjct: 187 SAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQV 246
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAAR 397
EP +E Y CMVD+L RAG+ D + ++ MPF P SA D+ E AA
Sbjct: 247 EPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAE 306
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
+FEL+P +S +VH FI
Sbjct: 307 VVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFI 366
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
AGD H +I ++ RL ++K+ GY + HSEKLA+AFG
Sbjct: 367 AGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFG 426
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
LIST PG+PLR++KNLR+C DCH+ TK +SK REI++ D RFHHF+DG CSC
Sbjct: 427 LISTPPGAPLRIVKNLRVCSDCHAATKVISKVTG----REILVRDTNRFHHFLDGMCSCN 482
Query: 521 DYW 523
DYW
Sbjct: 483 DYW 485
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHA---------HLIVCGVEL-----CAFLG----MFEK 64
VT+ + C L L G ++HA L+VC + C LG +F+
Sbjct: 114 VTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDG 173
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
M R+V SW+SM+ + G +E + L++ ++ EG
Sbjct: 174 MRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGT 210
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 160/581 (27%), Positives = 243/581 (41%), Gaps = 159/581 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R+ SW M+ Y G E LF L V+ A + + V + D
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVF-AWTAMVSGFVQNGMLDE 295
Query: 121 MISI---KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
I E N ++ +++ ++E A F++ N S
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW------------- 342
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
N+++ YA+C + A F ++ Q+ +SW AM++GYA
Sbjct: 343 ----------NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA----------- 381
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G E AL F +M + N +L+ L++CA++ +LGK++HG +++ Q
Sbjct: 382 -QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGY 440
Query: 298 GVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK---------- 331
G AL+++ G GS WN++I Y R G ++
Sbjct: 441 IAGNALLAMYG-KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM 499
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++G YF M + Y + + Y CM+DLL RAG+ D+
Sbjct: 500 TIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDE 559
Query: 370 TLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG----------- 408
LN MK MPF P +A + ++ E AA +FE+EP +SG
Sbjct: 560 ALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAA 619
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
K H F GD SH +I L L E
Sbjct: 620 SGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLE 679
Query: 437 IKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+KK G++ HSEKLA+AFG++S PG P+RVIKNLR+C DC
Sbjct: 680 LKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDC 739
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K++SK +R+II+ D+ RFHHF +G+CSCGDYW
Sbjct: 740 HNAIKHISKIT----QRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/371 (19%), Positives = 138/371 (37%), Gaps = 108/371 (29%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F++ P + + + + + V L A +F +MPE++V SW +M+ + G+ E
Sbjct: 113 VFEKMPDRDLISWNVMLSGY--VKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E + ++D M+ +K N +L +++ GR+E
Sbjct: 171 E-------------------------ARKIFDQML-VK---NEISWNGLLSAYVQNGRIE 201
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
A F+ K ++ +++ N LM Y + + L A F
Sbjct: 202 DARRLFDSK-----------------------MDWEIVSWNCLMGGYVRKKRLDDARSLF 238
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALE 248
++ + +SWN M+ GYA G E ++GF Q G + A
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M + N +S + ++A Q + + +E+ Q
Sbjct: 299 IFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFD--------------------QM 334
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQ 366
+ WN+++ Y +CG I + K ++ P + + M+ A++GQ
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNI---------DQAKILFDEMPQRDCISWAAMISGYAQSGQ 385
Query: 367 FDDTLNFMKKM 377
++ L+ KM
Sbjct: 386 SEEALHLFIKM 396
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 160/570 (28%), Positives = 235/570 (41%), Gaps = 165/570 (28%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ N + + ++ +E+ L F+ MP RNV +W +M+ Y G
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKEL--FDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E NLF D +D + I + L +F++ ME
Sbjct: 361 EAKNLF----------------DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ---ME 401
Query: 148 MASGEFEEKDFS-------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
G FS ++ L+ GK++H L K E+ V N+L+ Y KC +
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGR-LVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
+ A+ F ++ K +VSWN M+AGY+ GF GE AL FF M + ++P
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGF------------GEVALRFFESMKREGLKP 508
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ ++ VL+AC+ L+
Sbjct: 509 DDATMVAVLSACSHT------------------------------------------GLV 526
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
D +G +YF M ++Y + P + Y CMVDLL RAG +D N MK MPFE
Sbjct: 527 D-----------KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 381 PSSA----------EPCNPDIAEHAARHLFELEPLSSG---------------------- 408
P +A N ++AE AA +F +EP +SG
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 635
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
K H+F GD H +I L L +KK GY+ +
Sbjct: 636 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
Query: 448 AC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
HSE+LA+A+G++ S G P+RVIKNLR+C DCH+ KY+++
Sbjct: 696 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARIT 755
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
R II+ DN RFHHF DG+CSCGDYW
Sbjct: 756 G----RLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 149/378 (39%), Gaps = 85/378 (22%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F+R P+ +++ + +L EL L F++MPER++ SW M+ Y
Sbjct: 86 VFKRMPRWSSVSYNGMISGYLRNGEFELARKL--FDEMPERDLVSWNVMIKGYVRNRNLG 143
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVK--RPVLDMFIKCGR 145
+ LF ++ + V CS ++ M+S + N CV R V D R
Sbjct: 144 KARELFEIMPERDV---CS-----------WNTMLS-GYAQNGCVDDARSVFD------R 182
Query: 146 MEMASGEFEEKDFSNLSLL----KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
M E+ D S +LL ++ K L K L+ N L+ + K + +
Sbjct: 183 MP------EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGD 242
A F + + +VSWN ++ GYA G +E ++G+ Q
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A E F +M + N +S + +LA Q + ++ KE+ + ++
Sbjct: 297 VEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS-------- 344
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
WN++I Y +CG I +E F+ M K +P + M+ +
Sbjct: 345 ------------TWNTMITGYAQCGKI--SEAKNLFDKMPKR---DPV--SWAAMIAGYS 385
Query: 363 RAGQFDDTLNFMKKMPFE 380
++G + L +M E
Sbjct: 386 QSGHSFEALRLFVQMERE 403
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 181/678 (26%), Positives = 261/678 (38%), Gaps = 216/678 (31%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
TN ++ I C L + +VH + I G F+G
Sbjct: 266 TNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMEN 325
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F M ++V SW +M+ Y+ G +E LF ++ + DV
Sbjct: 326 AVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELF------------KNMRKENIPLDV 373
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------KDFSNLSLLKHGKE 169
+ I L++F R + SG ++L G E
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLF----RQMIFSGSLPNCVTIISVLSACASLGAFSQGTE 429
Query: 170 IHPHHLKK------DDL---ESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSW 218
IH + LK +D + DL+V N+L+D Y+KCR K A F I +++++V+W
Sbjct: 430 IHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTW 489
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVK 276
M+ G+A QYGD AL+ F MI + PN ++S +L ACA +
Sbjct: 490 TVMIGGHA------------QYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLA 537
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI------- 329
++GK+IH YVLRHH S+ FV N LIDMY +CG +
Sbjct: 538 AIRIGKQIHAYVLRHHRYESSAY--------------FVANCLIDMYSKCGDVDTARHVF 583
Query: 330 ----------------------QKNEGWRYFEMMKKEYNMEPAME--------QYCCMVD 359
+ +E F+ M+K + + +C MVD
Sbjct: 584 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 643
Query: 360 ---------------------------LLARAGQFDDTLNFMKKMPFEPSSA------EP 386
LLAR+G+ D +K MP EP++
Sbjct: 644 QGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703
Query: 387 C----NPDIAEHAARHLFELEPLSSGK--------------------------------- 409
C N ++AEHA L E+ + G
Sbjct: 704 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 763
Query: 410 ----------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
SF GD SH L +I L L IK +GY+ K
Sbjct: 764 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 823
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLALA+GL++TSPG P+R+ KNLR+CGDCHS Y+SK + EI++ D
Sbjct: 824 NLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIV----DHEIVVRD 879
Query: 506 NYRFHHFVDGACSCGDYW 523
RFHHF +G+CSCG YW
Sbjct: 880 PSRFHHFKNGSCSCGGYW 897
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/449 (24%), Positives = 179/449 (39%), Gaps = 113/449 (25%)
Query: 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL 92
P ++ LG V A + CG A L + P V+ W ++ + G + +N+
Sbjct: 91 PFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINV 149
Query: 93 FYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
++ G V KAC EL +R G + + FE N + ++ M+ +
Sbjct: 150 SCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSR 209
Query: 143 CGRMEMASGEFEEKD-----------------------------FSNLSLLKH------- 166
CG +E AS F+E FS ++L+ H
Sbjct: 210 CGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNER 269
Query: 167 ---------------------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
KE+H + ++ D+ V N+L+D YAKC ++ A
Sbjct: 270 SDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP-DVFVGNALIDAYAKCGLMENAVK 328
Query: 206 KFSKIKQKHLVSWNAMLAGYALGG-----------FREE------------ITGFTQYGD 242
F+ ++ K +VSWNAM+AGY+ G R+E I G++Q G
Sbjct: 329 VFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGC 388
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGI 301
AL F +MI + PN +++ VL+ACA + F G EIH Y L++ + L G
Sbjct: 389 SHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFG- 447
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ----YCCM 357
G V+N+LIDMY +C R F+ + ++ P E+ + M
Sbjct: 448 ------GEDEDLMVYNALIDMYSKC---------RSFKAARSIFDDIPLEERNVVTWTVM 492
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
+ A+ G +D L +M EP P
Sbjct: 493 IGGHAQYGDSNDALKLFVEMISEPYGVAP 521
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 267/643 (41%), Gaps = 213/643 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHA--------HLIVCGVELCAF----------LGMFEKM 65
T+A + + C L +G VH + GVEL L +FE+M
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDE----GVYKACSELKDHRVGK 115
P+ +V W+ M+ Y EE + +F +L ++ + +AC+ L D ++G
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGN 367
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------------- 155
++ +++ + + N V ++DM+ KCGRME + F E
Sbjct: 368 QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAG 427
Query: 156 ---------KDF-------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
KD + ++ L+ G +IH +K + + +V
Sbjct: 428 NGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKT-IYDKNTVVG 486
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+D YAKC +K A F +++ VSWNAM++GY++ G YG+ AL
Sbjct: 487 NALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGL---------YGE---AL 534
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F M++T+ +P+ ++ G+L+AC+
Sbjct: 535 KTFESMLETECKPDKVTFVGILSACSNA-------------------------------- 562
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
L+D G YF+ M +EY++EP E Y CMV LL R+G
Sbjct: 563 ----------GLLD-----------RGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHL 601
Query: 368 DDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEP--------LSS-- 407
D + ++PFEPS SA + D+ +A+ + E+EP LS+
Sbjct: 602 DKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIY 661
Query: 408 ---------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLY 434
G+VH F GDTSH I+ L L
Sbjct: 662 ANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLN 721
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ + GY+ + HSE+LALA+GLI T SPLR+IKNLR+C
Sbjct: 722 MKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICA 781
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K +SK +R+II+ D RFHHF +G CSCGDYW
Sbjct: 782 DCHAAIKLISKI----VQRDIIIRDMNRFHHFHEGICSCGDYW 820
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/399 (22%), Positives = 149/399 (37%), Gaps = 107/399 (26%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
+I + L Q ++P+ T Y + Q C + + G +H +I G L F
Sbjct: 24 IITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANN 83
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103
+F++MP+RN S+ +++ Y+ + E + LF L EG
Sbjct: 84 ILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEG--- 140
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
H + V+ ++ + + S E+ + FS
Sbjct: 141 -------HELNPFVFSTVLKL-----------------------LVSAEWAKLGFS---- 166
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+H + K +SD V +L+D Y+ C Y + A F I+ K +VSW M+A
Sbjct: 167 ------VHAC-VYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVA 219
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y EE +L+ FSRM +PN + + VL AC ++ F +GK
Sbjct: 220 CYVENECFEE------------SLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKA 267
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+HG + VG+ LID+Y + G + ++ + FE M K
Sbjct: 268 VHGCAFKTSYLEELFVGV----------------ELIDLYIKSGDV--DDALQVFEEMPK 309
Query: 344 E---------------YNMEPAMEQYCCMVDLLARAGQF 367
+ E A+E +C M L QF
Sbjct: 310 DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQF 348
>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
Length = 645
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 174/646 (26%), Positives = 258/646 (39%), Gaps = 216/646 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
YA I + C + G Q+HA L+V G L A L +F++M
Sbjct: 70 NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129
Query: 66 PER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRV 113
P + NVF W ++ Y G E + L+ ++ G V KAC+ L D
Sbjct: 130 PNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSA 189
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL---------- 163
G++V+D ++ + + V ++DM+ KCG M+ A F + + ++
Sbjct: 190 GREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQ 249
Query: 164 --------------------------------------LKHGKEIHPHHLKKDDLESDLL 185
L G+E+H + ++ D L
Sbjct: 250 NGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKL 309
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
SL+D YAK ++ VAH F ++ + L+SWNAM I GF +G +
Sbjct: 310 -KTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAM------------ICGFGMHGHADH 356
Query: 246 ALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A E FSRM + + P+ I+ GVL+AC HG
Sbjct: 357 AFELFSRMRSEAQVMPDHITFVGVLSACN-----------HG------------------ 387
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
G +Q E F++M Y+++P ++ Y C+VD+L +
Sbjct: 388 ----------------------GMVQ--EAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHS 423
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS------- 407
G+F + + +K M +P S C N ++AE A + L ELEP +
Sbjct: 424 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLS 483
Query: 408 ------------------------------------GKVHSFIAGDTSHSLVHKISEKLM 431
GK H F+ GD SH I E+L
Sbjct: 484 NIYAESGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELE 543
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
RL I + GY+ KR GHSE+LA+AFGLIST P + L V KNLR
Sbjct: 544 RLEGLISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLR 603
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH K +S+ E +REII+ D R+HHFV+G CSC D+W
Sbjct: 604 VCEDCHVVIKLISQIE----QREIIIRDVNRYHHFVNGECSCKDHW 645
>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
Length = 781
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 176/696 (25%), Positives = 271/696 (38%), Gaps = 215/696 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FEK 64
VTY I C +L+ G+++H ++ G E F+G F++
Sbjct: 106 VTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR 165
Query: 65 MPERNVFSWTSMMG-------------MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+ R+V SWT+M+ +Y + + N L Y + L +
Sbjct: 166 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSE- 224
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD----------- 157
GK VY + S E + V ++MF G + A FE+ +D
Sbjct: 225 --GKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLY 282
Query: 158 ----------------------------------FSNLSLLKHGKEIHPHHLKKDDLESD 183
+++L+ L GK IH +K+ + D
Sbjct: 283 VQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIH-ELVKEAGYDRD 341
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+V +LM Y +C A F + K +++W M YA GFR+E
Sbjct: 342 AVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKE---------- 391
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ F M +P + +L VL CA + + G++IH +++ + ++ V AL
Sbjct: 392 --ALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETAL 449
Query: 304 ISIQG---------------LGTGSFVWNSLIDMYGRCGAIQKN---------------- 332
I++ G VWNS++ Y + G +
Sbjct: 450 INMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADA 509
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+G++YF M +++++ P E Y C+VDLL RAG+ + ++ +
Sbjct: 510 VSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVL 569
Query: 376 K-----------MPFEPSSAEPCNPDIAEHAARHLFELEPLSSG---------------- 408
K M + D A+ AA + E +P SG
Sbjct: 570 KLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWD 629
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+VH F+ GD SH H I +L L SE++ G
Sbjct: 630 GVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAG 689
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K HSE+LA+AFGLIST PG+PLRVIKNLR+C DCH+ TK
Sbjct: 690 YIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATK 749
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y+SK R REI++ D +RFH+F DG CSC DYW
Sbjct: 750 YISKL----RGREILVRDTHRFHNFKDGRCSCKDYW 781
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 96/446 (21%), Positives = 175/446 (39%), Gaps = 117/446 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL---------IVCG--VELCAFLG------ 60
PD T + + QRC N++ G +VH H+ +VCG +++ A G
Sbjct: 2 PD--TAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 59
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+FE + ++VF+WT M+G+Y G Y+ + +FY + +E + AC+ +
Sbjct: 60 QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 119
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKH 166
+ G +++ ++ FEG+ V +++M+ KCG + A F E +D + + +
Sbjct: 120 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 179
Query: 167 GKEIH----------------------------------PHHLKKDD----------LES 182
H P++L + +ES
Sbjct: 180 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMES 239
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NS ++ + L A F + + +V+WN + IT + Q +
Sbjct: 240 DVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIV------------ITLYVQNEN 287
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+ F R+ Q ++ N I+ +L + GK IH
Sbjct: 288 FGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIH----------------E 331
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF-EMMKKEYNMEPAMEQYCCMVDLL 361
L+ G + V +L+ +YGRC A + W+ F +M K+ + + M
Sbjct: 332 LVKEAGYDRDAVVATALMSLYGRCEA--PGQAWKIFVDMGSKD------VITWTVMCVAY 383
Query: 362 ARAGQFDDTLNFMKKMPFE---PSSA 384
A+ G + L ++M E P+SA
Sbjct: 384 AQNGFRKEALQLFQEMQLEGRRPTSA 409
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI-------------- 49
K L Q M L + T + C L L+ G Q+H+H+I
Sbjct: 390 KEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETAL 449
Query: 50 -----VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
CG ++ + +FEKM +R++ W SM+G Y GYY+E + LF + +GV
Sbjct: 450 INMYGKCG-KMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKAD 508
Query: 102 ----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRP-----VLDMFIKCGRMEMA 149
S L D Y Y +++ + + P V+D+ + GR++ A
Sbjct: 509 AVSFVSVLSALSHSGSVTDGYQYFVAM-LQDFSITPTPELYGCVVDLLGRAGRIQEA 564
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 172/652 (26%), Positives = 264/652 (40%), Gaps = 198/652 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L M L T+A + +E G+QVH +I G++ F+G
Sbjct: 180 LFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYS 239
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+ M RN SW SM+ + G E LFY + EGV
Sbjct: 240 KSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV--------- 290
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
++ + ++ +I + C +N+ + K++
Sbjct: 291 -KLTQTIFATVIKL------------------C---------------ANIKEMSFAKQL 316
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGG 229
H +K + DL + +LM Y+KC + A F + +++VSW A+++GY
Sbjct: 317 HCQVIKNGS-DFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGY---- 371
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQ-VKGFKLGKEIHGY 287
Q G + A+ F +M + + ++PN + S VL ACA + GK+ H
Sbjct: 372 --------VQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 423
Query: 288 VLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK- 331
++ + V AL+++ + + WNS+I Y + G +K
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKS 483
Query: 332 --------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
NEG RYF++M K+Y++ P ME Y CMVD
Sbjct: 484 LKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVD 543
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSAE-------PC----NPDIAEHAARHLFELEPLSSG 408
L +RAG + ++ + KMPF P+ A C N + E AA L L+P S
Sbjct: 544 LYSRAGMLEKAMDLINKMPF-PAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSA 602
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
K SF+AGD SH +
Sbjct: 603 AYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDR 662
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I KL L +K GY K + HSE+LA+AFGLI+T PG+P++
Sbjct: 663 IYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQ 722
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+CGDCH+ K +SK E R+I++ D+ RFHHF G+CSCGDYW
Sbjct: 723 IVKNLRVCGDCHTVIKLISKIEG----RDIVVRDSNRFHHFKGGSCSCGDYW 770
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 29/159 (18%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H +K +E D+ V SL+D Y K ++ F +++ K++VSW ++LAGY
Sbjct: 111 GKQVHCQCIKCGFVE-DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYR 169
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G E+ AL+ FS+M ++PN + + VL A + G ++H
Sbjct: 170 QNGLNEQ------------ALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
V++ GL + FV NS+++MY +
Sbjct: 218 MVIK----------------SGLDSTIFVGNSMVNMYSK 240
>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 155/587 (26%), Positives = 251/587 (42%), Gaps = 147/587 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ M ER+ W +M+ ++E + +F ++ G V +EL+D
Sbjct: 163 VFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQD 222
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLKHG 167
+G + + + F +A V + ++ KCG +E A G+ + D + + + G
Sbjct: 223 LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISG 282
Query: 168 KEIHPHHLKKDDLESDLLVN---------------------------------------- 187
+ L +LLV+
Sbjct: 283 YTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSN 342
Query: 188 ----NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+L Y++ ++ A F + +K L SWNAM++GYA Q G
Sbjct: 343 SSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYA------------QNGLT 390
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E A+ F M + +++PN ++++ +L+ACAQ+ LGK +H + R + + + +
Sbjct: 391 EKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFMLHSR 450
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+S G+ + S++ G ++ EG F M ++ EP E Y CMVDLL R
Sbjct: 451 VSPTGV-----TFLSVLYACSHAGLVR--EGDEIFRSMVHDHGFEPLPEHYACMVDLLGR 503
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
AG D L+F++KMP EP C + ++A A+ LFEL+P + G
Sbjct: 504 AGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLL 563
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
+H F +GD SH I L
Sbjct: 564 SNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAML 623
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
+L ++++ G+ K + HSEKLA+AFGLI++ PG+ +R+IKNL
Sbjct: 624 EKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNL 683
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH+ TK++SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 684 RVCLDCHNATKFISKIT----ERVIVVRDANRFHHFKDGICSCGDYW 726
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 170/638 (26%), Positives = 263/638 (41%), Gaps = 171/638 (26%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
VT + + ++ LG Q+H +I G E +G +F
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC--SELKDHRVGKDVYDYMI 122
+ +RN + S+MG G E+ + LF + + V A L + + K+ +
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+K +G + P + CG L + GK+IH + + + +
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACG---------------GLGAINEGKQIHAC-IIRTNFQD 303
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V ++L+D Y KC+ L A F ++KQK++VSW AM+ GY Q G
Sbjct: 304 HIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG------------QTGR 351
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV----LRHHIQLSTG 298
E A++ F M ++ + P+ +L ++ACA V + G + HG L H++ +S
Sbjct: 352 AEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 411
Query: 299 V--------------------------------------GIALISIQ--------GLGTG 312
+ G A+ +IQ GL
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+I R G ++K G RYF++M EY + P++ Y CM+DL +R+G+ ++ +
Sbjct: 472 GVTLTGVISACSRAGLVEK--GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
F+ MPF P + C N +I + AA L EL+P LSS
Sbjct: 530 FINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 589
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
GK+HSF A D S + +I KL L ++I
Sbjct: 590 WDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIID 649
Query: 440 IGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY +K HSE+LA+AFGLI G P+RV KNLR+C DCH+
Sbjct: 650 NGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNA 709
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++S REI++ D RFH F DG CSCGD+W
Sbjct: 710 TKHISSVTG----REILVRDAVRFHRFKDGTCSCGDFW 743
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 47/256 (18%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKD 110
FEK+P+R+ +W ++ Y++ G V + ++ + + K S
Sbjct: 95 FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+GK ++ +I + FE V P+L M+ G + A F D
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD------------- 201
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ + ++ NSLM C ++ A F + +K VSW AM+ G A G
Sbjct: 202 ----------DRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGL 250
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+E A+E F M ++ + VL AC + GK+IH ++R
Sbjct: 251 AKE------------AIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR 298
Query: 291 HHIQLSTGVGIALISI 306
+ Q VG ALI +
Sbjct: 299 TNFQDHIYVGSALIDM 314
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 39/166 (23%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG-------- 60
+PD T+ A+ C +++LE G Q H I G+ L G
Sbjct: 368 DPDHYTLGQAI--SACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F +M R+ SWT+M+ Y G E + LF ++ GV ACS
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485
Query: 109 KDHRVGKDVYDYMIS----IKFEGN-ACVKRPVLDMFIKCGRMEMA 149
G+ + M S + G+ +C ++D+F + GR+E A
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSC----MIDLFSRSGRLEEA 527
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 161/614 (26%), Positives = 255/614 (41%), Gaps = 148/614 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
I Q+ K +NL QVHA ++ G+ F+ ++ + +S +
Sbjct: 8 ILQKLQKCHNLNTLKQVHAQMLTTGLS-------FQTYYLSHLLNTSSKFASTYAFTIFN 60
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
I N L + + + +Y+++++ K P L F C
Sbjct: 61 HIPNPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSL--FKACASHP 118
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
L+HG +H H LK D V NSL++FYAK L V+ F
Sbjct: 119 W---------------LQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLF 163
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE---FFSRMIQTDMQPNTIS 264
+I + L +WN MLA YA ++ T + D + +LE F M + ++PN ++
Sbjct: 164 DQISEPDLATWNTMLAAYAQSA--SHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVT 221
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------L 309
L +++AC+ + G HGYVLR++++L+ VG AL+ +
Sbjct: 222 LVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELS 281
Query: 310 GTGSFVWNSLIDMYGRCG------AIQKN---------------------------EGWR 336
+F +N++I + G + +N EG
Sbjct: 282 DRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLE 341
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEP 386
FE MK + MEP +E Y C++DLL RAG+ + ++ MP +P ++
Sbjct: 342 IFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLH 401
Query: 387 CNPDIAEHAARHLFELEPLSSGK------------------------------------- 409
N ++ E A +HL ELEP +SG
Sbjct: 402 GNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSL 461
Query: 410 ------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC-------------- 449
+H F+ GD +H +I K+ + + + G+ R
Sbjct: 462 VEINGAMHEFLTGDKAHPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLS 521
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSE+LA+AF LI++S P+R+IKNLR+CGDCH+ TK +S A +R+II+ D RF
Sbjct: 522 YHSERLAIAFALIASSSSMPIRIIKNLRVCGDCHAITKLISAA----YQRDIIVRDRNRF 577
Query: 510 HHFVDGACSCGDYW 523
HHF DG+CSC DYW
Sbjct: 578 HHFKDGSCSCLDYW 591
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 165/645 (25%), Positives = 264/645 (40%), Gaps = 184/645 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + ++++L LG +H I V F+ +F +
Sbjct: 135 TFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 194
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
E++V SW SM+ + G ++ + LF + E GV AC++++D G+
Sbjct: 195 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGR 254
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V Y+ + N + +LDM+ KCG +E A F+ +
Sbjct: 255 RVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME------------------ 296
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
E D + +++D YA + A + + +K +V+WNA+++ Y G
Sbjct: 297 -----EKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNG------ 345
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
E L F +Q +++ N I+L L+ACAQV +LG+ IH Y+ ++ I++
Sbjct: 346 -----KPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKM 400
Query: 296 STGVGIALISIQGL---------------GTGSFVWNSLID---MYGRCGA--------- 328
+ V ALI + FVW+++I M+G CG+
Sbjct: 401 NFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHG-CGSEAVDMFYKM 459
Query: 329 ----IQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ N E F M+ Y + P + Y C+VD+L R+G
Sbjct: 460 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGY 519
Query: 367 FDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSGK------- 409
+ + F++ MP PS++ N +AE A L ELEP + G
Sbjct: 520 LEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNI 579
Query: 410 ------------------------------------VHSFIAGDTSHSLVHKISEKLMRL 433
+H F++GD +H + K+ KL +
Sbjct: 580 YAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEV 639
Query: 434 YSEIKKIGY---------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
++K GY MK HSEKLA+ +GLIST +RVIKNLRM
Sbjct: 640 MEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRM 699
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCH+ K +S+ REII+ D YRFHHF +G CSC D+W
Sbjct: 700 CGDCHAVAKLISQL----YNREIIVRDRYRFHHFRNGQCSCNDFW 740
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 44/229 (19%)
Query: 162 SLLKHGKEIHPHHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
S L+ K+ H H ++ D + L + + +A Y + F +I Q + +
Sbjct: 42 SSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKV---FDEIPQPNSFT 98
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ--PNTISLSGVLAACAQV 275
WN ++ YA G D ++ F M+ ++ Q PN + ++ A A+V
Sbjct: 99 WNTLIRAYASGP------------DPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEV 146
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
LG+ +HG ++ +G+ FV NSLI Y CG + +
Sbjct: 147 SSLSLGQSLHGMAIK----------------SAVGSDVFVANSLIHCYFSCGDL--DSAC 188
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ F +K E + + M++ + G D L KKM E A
Sbjct: 189 KVFTTIK-----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 232
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 177/659 (26%), Positives = 267/659 (40%), Gaps = 196/659 (29%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
PD T T+ + C L + E+ +H ++ G ++G
Sbjct: 112 QPD--TYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKA 169
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+FE+MP R+V SW S++ YN GY+ E + ++Y I ++
Sbjct: 170 RKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQSIK------------------LF 211
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
M++ +F+ + +L CG +L L+ GK +H + +
Sbjct: 212 MEMVN-QFKPDLLTITSILQ---ACG---------------HLGDLEFGKYVHDYMITSG 252
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------- 229
E D +N L++ YAKC L + FS +K K VSWN+M+ Y G
Sbjct: 253 -YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311
Query: 230 ----FREEITGFTQYG------DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
R+ IT T D L SRM + P+ ++ +L C+ + +
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYG 324
GKEIHG + + ++ VG LI + G SF W +LI G
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 431
Query: 325 RCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAM 351
G +K EG YF MKK+Y +EP +
Sbjct: 432 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 491
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E Y C+VDLL+R+ D +F+ MP +P S+ C + +IAE + + E
Sbjct: 492 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 551
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
L P +G KV+ F G
Sbjct: 552 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTK 611
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
++++ L L + K GY+ KR CGHSE+LA+AFGL++T
Sbjct: 612 FFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNT 671
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG+PL+V+KNLR+C DCH+ TKY+SK +RE+++ D RFH F DGACSCGDYW
Sbjct: 672 KPGTPLQVMKNLRVCEDCHTVTKYISKIV----QRELLVRDANRFHVFKDGACSCGDYW 726
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 75/313 (23%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P NV+ W S++ G + E ++L+ SE + R+ D Y + I
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLY------------SETQRIRLQPDTYTFPSVI- 122
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
NAC +LD EMA K IH L SDL
Sbjct: 123 ---NACAG--LLDF-------EMA------------------KSIHDRVLDMG-FGSDLY 151
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF-REEITGFTQYGDGE 244
+ N+L+D Y + L A F ++ + +VSWN++++GY G+ E + + Q
Sbjct: 152 IGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYQ----- 206
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+++ F M+ +P+ ++++ +L AC + + GK +H Y++ + T
Sbjct: 207 -SIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS---- 260
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
N LI+MY +CG + ++ F MK + ++ + M+++ +
Sbjct: 261 ------------NILINMYAKCGNLLASQ--EVFSGMKCKDSV-----SWNSMINVYIQN 301
Query: 365 GQFDDTLNFMKKM 377
G+ D+L + M
Sbjct: 302 GKMGDSLKVFENM 314
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 160/581 (27%), Positives = 243/581 (41%), Gaps = 159/581 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R+ SW M+ Y G E LF L V+ A + + V + D
Sbjct: 237 LFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVF-AWTAMVSGFVQNGMLDE 295
Query: 121 MISI---KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
I E N ++ +++ ++E A F++ N S
Sbjct: 296 ATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW------------- 342
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
N+++ YA+C + A F ++ Q+ +SW AM++GYA
Sbjct: 343 ----------NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA----------- 381
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G E AL F +M + N +L+ L++CA++ +LGK++HG +++ Q
Sbjct: 382 -QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGY 440
Query: 298 GVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK---------- 331
G AL+++ G GS WN++I Y R G ++
Sbjct: 441 IAGNALLAMYG-KCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKM 499
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++G YF M + Y + + Y CM+DLL RAG+ D+
Sbjct: 500 TIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDE 559
Query: 370 TLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG----------- 408
LN MK MPF P +A + ++ E AA +FE+EP +SG
Sbjct: 560 ALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAA 619
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
K H F GD SH +I L L E
Sbjct: 620 SGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLE 679
Query: 437 IKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+KK G++ HSEKLA+AFG++S PG P+RVIKNLR+C DC
Sbjct: 680 LKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDC 739
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K++SK +R+II+ D+ RFHHF +G+CSCGDYW
Sbjct: 740 HNAIKHISKIT----QRQIIVRDSNRFHHFSEGSCSCGDYW 776
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/371 (19%), Positives = 138/371 (37%), Gaps = 108/371 (29%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F++ P + + + + + V L A +F +MPE++V SW +M+ + G+ E
Sbjct: 113 VFEKMPDRDLISWNVMLSGY--VKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E + ++D M+ +K N +L +++ GR+E
Sbjct: 171 E-------------------------ARKIFDQML-VK---NEISWNGLLSAYVQNGRIE 201
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
A F+ K ++ +++ N LM Y + + L A F
Sbjct: 202 DARRLFDSK-----------------------MDWEIVSWNCLMGGYVRKKRLDDARSLF 238
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALE 248
++ + +SWN M+ GYA G E ++GF Q G + A
Sbjct: 239 DRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATR 298
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M + N +S + ++A Q + + +E+ Q
Sbjct: 299 IFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFD--------------------QM 334
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQ 366
+ WN+++ Y +CG I + K ++ P + + M+ A++GQ
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNI---------DQAKILFDEMPQRDCISWAAMISGYAQSGQ 385
Query: 367 FDDTLNFMKKM 377
++ L+ KM
Sbjct: 386 SEEALHLFIKM 396
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 165/632 (26%), Positives = 258/632 (40%), Gaps = 191/632 (30%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRVG 114
P R+ S+ ++ + G+ E+ ++LF ++D+ K+CS + D VG
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---------------------------- 146
+ V Y F + V ++ M+ CG +
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250
Query: 147 -------EMASGEFEEK-DFSNLSLL------------KHGKEIHPHHLKKDDLESDLLV 186
EM G E + F ++LL G+ I + +K L S L
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLA 310
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D YAKC L A F ++ + +V+W+AM++GY TQ A
Sbjct: 311 T-ALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGY------------TQSDRCREA 357
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-- 304
L F+ M T++ PN +++ VL+ACA + + GK +H Y+ R + L+ +G AL+
Sbjct: 358 LAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDF 417
Query: 305 ---------SIQGLGT----GSFVWNSLIDMYGRCGAIQK-------------------- 331
+++ + ++ W +LI G ++
Sbjct: 418 YAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTF 477
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EG R+F M ++Y + P +E Y CMVDLL RAG D+ F++ MP
Sbjct: 478 IGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP 537
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------------- 409
EP++ C N +I E A + + L+P SG
Sbjct: 538 IEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAM 597
Query: 410 ------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
+ F A D+ H + +I EK+ + IK +GY+
Sbjct: 598 VRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPN 657
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K++ HSEKLA+AFGL+ + PG+ +R+ KNLR+C DCHS TK +SK
Sbjct: 658 TADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISK 717
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSC DYW
Sbjct: 718 VYN----REIIVRDRNRFHHFKDGLCSCNDYW 745
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 164/652 (25%), Positives = 265/652 (40%), Gaps = 200/652 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ +F+ + LE G Q+H H++ G++ F+ G+F+
Sbjct: 141 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 200
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ +V +W ++ YN +G +EE LF ++ D K V +++
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMED----------------KQVLPTTVTLV 244
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC S L L+ GK++H + +K +ES+L+
Sbjct: 245 LVLSAC---------------------------SKLKDLRTGKKVHSY-VKNCKVESNLV 276
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---------------- 229
+ N+++D YA C + A F + + ++SW +++G+ G
Sbjct: 277 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ I G+ + + ALE F M T+++P+ ++ VL ACA + +LG+ I
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 396
Query: 287 YVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI----------- 320
Y+ R+ I+ V ALI + + F W ++I
Sbjct: 397 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 456
Query: 321 --DMYGR-------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
DM+ G + ++G +YF M ++ +EP + Y C+V
Sbjct: 457 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 516
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLS-- 406
DLLARAG+ + ++ MP + +S C D+AE + + ELEP +
Sbjct: 517 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 576
Query: 407 -----------------------------------------SGKVHSFIAGDTSHSLVHK 425
+G+VH F+AGD SH
Sbjct: 577 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKN 636
Query: 426 ISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLR 471
I KL ++ ++K GY I HSEKLA+AFGLI++ PG +R
Sbjct: 637 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIR 696
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KNLRMC DCH+ K VSK RE+I+ D RFHHF G CSC DYW
Sbjct: 697 ITKNLRMCMDCHNMAKLVSKV----YNREVIVRDRTRFHHFKHGLCSCKDYW 744
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 94/351 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+++PE N+F W +M+ Y+ L + + V+L+ ++ GV +K +
Sbjct: 95 LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 154
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
G+ ++ +++ + N V ++ M++ CG+++ A G F
Sbjct: 155 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 214
Query: 154 -----------------EEKDF--------------SNLSLLKHGKEIHPHHLKKDDLES 182
E+K S L L+ GK++H ++K +ES
Sbjct: 215 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS-YVKNCKVES 273
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------- 229
+L++ N+++D YA C + A F + + ++SW +++G+ G
Sbjct: 274 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 333
Query: 230 ------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ I G+ + + ALE F M T+++P+ ++ VL ACA + +LG+
Sbjct: 334 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 393
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
I Y+ R+ I+ FV N+LIDMY +CG + K E
Sbjct: 394 IRTYIDRNKIK----------------NDLFVRNALIDMYFKCGDVDKAES 428
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGY 225
+++H +KK L ++ ++ N +M F Y + A F +I + +L WN M+ GY
Sbjct: 56 QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGY 114
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ F Q G + + M++ ++P+ + + + + G+++H
Sbjct: 115 SR-------LDFPQLG-----VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLH 162
Query: 286 GYVLRHHIQLSTGVGIALISIQGL------GTGSF---------VWNSLIDMYGRCGAIQ 330
G+VL+H +Q + V AL+ + L G F WN +I Y + G +
Sbjct: 163 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 222
Query: 331 KNEGWRYFEMMKKE 344
E R F +M+ +
Sbjct: 223 --ESRRLFLVMEDK 234
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 181/720 (25%), Positives = 285/720 (39%), Gaps = 209/720 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNN-LELGIQVHAHLIVCG----------VELCA 57
L + M N D + T + C + + LG QVHA+ + G V + A
Sbjct: 420 LFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYA 479
Query: 58 FLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
LG +F +++ SW +++ + +EE + YL+I +G
Sbjct: 480 RLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLAS 539
Query: 101 VYKACSELKDHRVGKDVYDYMI-SIKFEGNACVKRPVLDMFIKC-----GRMEM------ 148
V ACS+L+ R+G++++ Y + + N+ V ++DM+ C GR+
Sbjct: 540 VLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRR 599
Query: 149 ------------ASGEFEEKDFSNLSLLKHGKEIHPH----------------------- 173
A EF+++ + E P+
Sbjct: 600 TVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGI 659
Query: 174 --HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
++ K D V N+LMD Y++ ++++ F ++ ++ +VSWN M+ G + G
Sbjct: 660 HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRY 719
Query: 232 EEITGF------TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
++ Q DG + +PN+++L VL CA + GKEIH
Sbjct: 720 DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779
Query: 286 GYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLIDMYGRCG--- 327
Y ++ + + VG AL+ + L + F WN LI YG G
Sbjct: 780 AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGE 839
Query: 328 ------------------AIQKN------------------EGWRYFEMMKKEYNMEPAM 351
I+ N EG F MK + +EP
Sbjct: 840 EALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRG 899
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNP-----------DIAEHAARHLF 400
+ Y C+VDLL R+G+ + + MP + + + + E AA+HLF
Sbjct: 900 DHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLF 959
Query: 401 ELEP-------------LSSG------------------------------KVHSFIAGD 417
LEP S+G +VH F++GD
Sbjct: 960 VLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGD 1019
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLIS 463
SH ++ E L L ++K GY+ I CGHSE+LA+AFGL++
Sbjct: 1020 ASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLN 1079
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T PG+ +RV KNLR+C DCH TK +SK +REII+ D RFHHF +G CSCGDYW
Sbjct: 1080 TPPGTTIRVAKNLRVCNDCHVATKIISKIV----DREIILRDVRRFHHFANGTCSCGDYW 1135
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 106/439 (24%), Positives = 176/439 (40%), Gaps = 126/439 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV---------------------CGVELCAFLGMF 62
+ + + +++L LG Q+HAH+ CG +L A +F
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCG-DLTAARQVF 390
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDH- 111
+ +P+R+ SW SM+ +E ++LF L++ E V ACS ++
Sbjct: 391 DDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGV 450
Query: 112 RVGKDVYDYMIS----IKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF------ 158
R+GK V+ Y + + NA V M+ + GR+ A G F+ KD
Sbjct: 451 RLGKQVHAYTLRNGDLRTYTNNALVT-----MYARLGRVNDAKALFGVFDGKDLVSWNTV 505
Query: 159 ---------------------------------------SNLSLLKHGKEIHPHHLKKDD 179
S L L+ G+EIH + L+ D
Sbjct: 506 ISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGD 565
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L + V +L+D Y C+ K F + ++ + WNA+LAGYA F ++
Sbjct: 566 LIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQ------ 619
Query: 240 YGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
AL F MI +++ PN + + VL AC + K F + IHGY+++
Sbjct: 620 ------ALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVK-------- 665
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+G G +V N+L+DMY R G ++ ++ F M K + + M+
Sbjct: 666 --------RGFGKDKYVQNALMDMYSRMGRVEISK--TIFGRMNKR-----DIVSWNTMI 710
Query: 359 DLLARAGQFDDTLNFMKKM 377
G++DD LN + +M
Sbjct: 711 TGCIVCGRYDDALNLLHEM 729
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 164/595 (27%), Positives = 247/595 (41%), Gaps = 207/595 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG----VYKACSELKD 110
MF+++P ++V SW +M+ Y G Y+E + LF ++ DEG V AC++ +
Sbjct: 154 MFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRS 213
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
+G+ V+ ++ F N + ++D++ KCG++E A G FE KD
Sbjct: 214 VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGG 273
Query: 158 FSNLSLLKH-----------------------------------GKEIHPHHLKK-DDLE 181
+++++L K G+ IH + KK D+
Sbjct: 274 YTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVT 333
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ + SL+D YAKC ++ AH F+ + K L SWNAM+ G+A+ +G
Sbjct: 334 NAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAM------------HG 381
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ FSRM + ++P+ I+ G+L+AC+ LG+ HI
Sbjct: 382 RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR---------HI-------- 424
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
F+ M ++Y++ P +E Y CM+DLL
Sbjct: 425 ------------------------------------FKSMTQDYDITPKLEHYGCMIDLL 448
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG--- 408
+G F + +K MP EP C N ++AE AR+L ++EP + G
Sbjct: 449 GHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYV 508
Query: 409 ----------------------------------------KVHSFIAGDTSH-------- 420
+VH FI GD H
Sbjct: 509 LLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYG 568
Query: 421 ------------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGS 468
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+
Sbjct: 569 MLEEMEALLEEAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTKPGT 622
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
L ++KNLR+C +CH TK VSK K REII D RFHHF DG CSC D+W
Sbjct: 623 KLTIVKNLRVCRNCHEATKLVSKIYK----REIIARDRTRFHHFRDGVCSCNDFW 673
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 129/282 (45%), Gaps = 61/282 (21%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSEL 108
+ +F + E N W +M+ Y + + L+ ++I G+ K+C++
Sbjct: 20 ISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKS 79
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K G+ ++ +++ + +E + V ++ M+ + GR+E A F+
Sbjct: 80 KAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSS----------- 128
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
D++ +L+ YA ++ A F +I K +VSWNAM++GYA
Sbjct: 129 ------------HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAET 176
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G +E ALE F M++T+++P+ ++ VL+ACAQ + +LG+++H ++
Sbjct: 177 GSYKE------------ALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWI 224
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
H G G+ + N+LID+Y +CG ++
Sbjct: 225 DDH----------------GFGSNLKIVNALIDLYSKCGQVE 250
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 183/654 (27%), Positives = 277/654 (42%), Gaps = 193/654 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL--------IV-----------CGVELCAF 58
P Y+ + C + LELG +VHAH IV CG + A
Sbjct: 59 PQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQ 118
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+ +F+++P++++ SW +M+ Y +G E+ LF D +D +
Sbjct: 119 M-LFDEIPQKDLCSWNTMISGYANVGRIEQARKLF----------------DEMPHRDNF 161
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL-------------- 164
+ I + LD+F RM +E + SN ++
Sbjct: 162 SWNAVISGYVSQGWYMEALDLF----RM------MQENESSNCNMFTLSSALAAAAAISS 211
Query: 165 -KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+ GKEIH + L + LE D +V +L+D Y KC L A F ++ K +VSW M+
Sbjct: 212 LRRGKEIHGY-LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIH 270
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
G ++E GF+ + D ++ + ++PN + +GVL ACA + ++GKE
Sbjct: 271 RCFEDGRKKE--GFSLFRD----------LMGSGVRPNEYTFAGVLNACADLAAEQMGKE 318
Query: 284 IHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG- 327
+HGY+ R + AL+ + Q W SLI Y + G
Sbjct: 319 VHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQ 378
Query: 328 ---AIQKNE-----------------------------GWRYFEMMKKEYNMEPAMEQYC 355
A+Q E G YF +K+++ + + Y
Sbjct: 379 PDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYA 438
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPL 405
C++DLLAR+G+F + N + MP +P S C N ++AE AA+ LFELEP
Sbjct: 439 CVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPE 498
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
+ +VH F+ GDTSH
Sbjct: 499 NPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPK 558
Query: 423 VHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGS 468
+ I E L L ++K+ GY+ K HSEKLA+AFG+ISTSPG+
Sbjct: 559 ISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGT 618
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
P++V KNLR C DCH+ KY+SK +R+II+ D+ RFH FVDG+CSC DY
Sbjct: 619 PIKVFKNLRTCVDCHNAMKYISKIV----QRKIIVRDSNRFHCFVDGSCSCKDY 668
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 164/652 (25%), Positives = 265/652 (40%), Gaps = 200/652 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ +F+ + LE G Q+H H++ G++ F+ G+F+
Sbjct: 120 TFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVC 179
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ +V +W ++ YN +G +EE LF ++ D K V +++
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMED----------------KQVLPTTVTLV 223
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC S L L+ GK++H + +K +ES+L+
Sbjct: 224 LVLSAC---------------------------SKLKDLRTGKKVHSY-VKNCKVESNLV 255
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---------------- 229
+ N+++D YA C + A F + + ++SW +++G+ G
Sbjct: 256 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ I G+ + + ALE F M T+++P+ ++ VL ACA + +LG+ I
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRT 375
Query: 287 YVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI----------- 320
Y+ R+ I+ V ALI + + F W ++I
Sbjct: 376 YIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEK 435
Query: 321 --DMYGR-------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
DM+ G + ++G +YF M ++ +EP + Y C+V
Sbjct: 436 ALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLV 495
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLS-- 406
DLLARAG+ + ++ MP + +S C D+AE + + ELEP +
Sbjct: 496 DLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGA 555
Query: 407 -----------------------------------------SGKVHSFIAGDTSHSLVHK 425
+G+VH F+AGD SH
Sbjct: 556 VYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKN 615
Query: 426 ISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLR 471
I KL ++ ++K GY I HSEKLA+AFGLI++ PG +R
Sbjct: 616 IDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIR 675
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KNLRMC DCH+ K VSK RE+I+ D RFHHF G CSC DYW
Sbjct: 676 ITKNLRMCMDCHNMAKLVSKV----YNREVIVRDRTRFHHFKHGLCSCKDYW 723
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 94/351 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+++PE N+F W +M+ Y+ L + + V+L+ ++ GV +K +
Sbjct: 74 LFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIA 133
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
G+ ++ +++ + N V ++ M++ CG+++ A G F
Sbjct: 134 LEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISA 193
Query: 154 -----------------EEKDF--------------SNLSLLKHGKEIHPHHLKKDDLES 182
E+K S L L+ GK++H ++K +ES
Sbjct: 194 YNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHS-YVKNCKVES 252
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------- 229
+L++ N+++D YA C + A F + + ++SW +++G+ G
Sbjct: 253 NLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMP 312
Query: 230 ------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ I G+ + + ALE F M T+++P+ ++ VL ACA + +LG+
Sbjct: 313 EKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEW 372
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
I Y+ R+ I+ FV N+LIDMY +CG + K E
Sbjct: 373 IRTYIDRNKIK----------------NDLFVRNALIDMYFKCGDVDKAES 407
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGY 225
+++H +KK L ++ ++ N +M F Y + A F +I + +L WN M+ GY
Sbjct: 35 QQVHCQAIKKG-LNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGY 93
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ F Q G + + M++ ++P+ + + + + G+++H
Sbjct: 94 SR-------LDFPQLG-----VSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLH 141
Query: 286 GYVLRHHIQLSTGVGIALISIQGL------GTGSF---------VWNSLIDMYGRCGAIQ 330
G+VL+H +Q + V AL+ + L G F WN +I Y + G +
Sbjct: 142 GHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 201
Query: 331 KNEGWRYFEMMKKE 344
E R F +M+ +
Sbjct: 202 --ESRRLFLVMEDK 213
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 166/634 (26%), Positives = 267/634 (42%), Gaps = 164/634 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
+L M L VT I CP+L ++ + +H ++I G+E
Sbjct: 303 VLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF------------- 349
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD---VYDYMISIK 125
++F +++ MY G E+ F + V S + + D + + + ++
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G +P L + +AS + +D K+ + +H +++ L D++
Sbjct: 410 LNG----FQPDLLTLV-----SLASIVAQSRD------CKNSRSVHGFIMRRGWLMEDVV 454
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+++D YAK L AH F I K ++SWN ++ GYA G E
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASE------------ 502
Query: 246 ALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+E + M + ++ PN + +L A A V + G IHG V++ ++ L V LI
Sbjct: 503 AIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLI 562
Query: 305 SIQG---------------LGTGSFVWNSLIDMYGRCGAIQKN----------------- 332
+ G S WN++I +G G +K
Sbjct: 563 DVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHV 622
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG F +M+ EY ++P+++ Y CMVDLL RAG + F+K
Sbjct: 623 TFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKD 681
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MP +P ++ C N ++ + A+ LFE++ + G
Sbjct: 682 MPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGV 741
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
KV F G+ SH +I E+L L +++K +GY+
Sbjct: 742 DKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYI 801
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSE+LA+AFG+IST P SP+R+ KNLR+CGDCH+ TK++
Sbjct: 802 PDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFI 861
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S R +REI++ D+ RFHHF DG CSCGDYW
Sbjct: 862 S----RITQREIVVRDSNRFHHFKDGICSCGDYW 891
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 112/517 (21%), Positives = 201/517 (38%), Gaps = 128/517 (24%)
Query: 44 VHAHLIVCG-----------VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGY 85
+HA L+V G V L A LG F+++P+++V++W SM+ Y G+
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197
Query: 86 YEEIVNLFY--LLIDE---------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ E + FY LL+ E V KAC L D G+ ++ + + F+ N V
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAA 254
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKHGKEIH--------------- 171
++ M+ + G +A F++ F ++ L+++G
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314
Query: 172 ------------PH------------HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
P ++ K LE DL V+N+L++ YAK L+ A F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ +VSWN+++A Y Q D TA FF +M QP+ ++L
Sbjct: 375 QQMFITDVVSWNSIIAAY------------EQNDDPVTAHGFFVKMQLNGFQPDLLTLVS 422
Query: 268 VLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQG---------------LGT 311
+ + AQ + K + +HG+++R + +G A++ + L
Sbjct: 423 LASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482
Query: 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
WN+LI Y + G +E ++MM++ + P + ++ A G +
Sbjct: 483 DVISWNTLITGYAQNGL--ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGM 540
Query: 372 NF----MKKMPFEPSSAEPCNPDIAEHAAR-----HLFELEPLSSGKVHSFIAGDTSHSL 422
+K C D+ R LF P S + I + H
Sbjct: 541 RIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAII--SCHG- 597
Query: 423 VHKISEKLMRLYSEI-------KKIGYMKRIPACGHS 452
+H +EK ++L+ E+ + ++ + AC HS
Sbjct: 598 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 185/701 (26%), Positives = 280/701 (39%), Gaps = 224/701 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLI----VCGVELCAFL--------------GMFEKM 65
T + Q C KL L G Q+H ++I V +C + +F+
Sbjct: 234 TIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDST 293
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----IDEGVYKACSELKDHRVGKDVYDYM 121
+ N+ SW S++ Y V G +LF + I + S L H + + +
Sbjct: 294 EDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVL 353
Query: 122 ISIK------FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
+I+ F+ ++C L I+ G + GKEIH + +
Sbjct: 354 TNIRSLQSAGFKPDSCSITSALQAVIELGYFNL------------------GKEIHGY-I 394
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH--------------------- 214
+ LE D+ V SL+D Y K L+ A F K K+
Sbjct: 395 MRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAE 454
Query: 215 --------------LVSWNAMLAGYALGGFREE-----------------------ITGF 237
LV+WN++++GY++ G EE I+G
Sbjct: 455 KLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGC 514
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q + AL+FFS+M + +++PN+ ++S +L ACA K G+EIH + ++H
Sbjct: 515 CQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDI 574
Query: 298 GVGIALISIQGLGTGSFV---------------WNSLI---DMYG--------------- 324
+ ALI + G V WN ++ +YG
Sbjct: 575 YIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKT 634
Query: 325 --RCGAIQ--------KN-----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
R AI KN +GW+YF+ MK +Y++ P +E Y CMVDLL +AG D+
Sbjct: 635 GIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDE 694
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK---------- 409
L+F+ MP + ++ C + IAE AAR+LF LEP +S
Sbjct: 695 ALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYST 754
Query: 410 ---------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSE 436
+H F SH +I L +L SE
Sbjct: 755 FERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISE 814
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
IKK+GY+ K H+EKLA+ +GL+ G+P+RV+KN R+C DC
Sbjct: 815 IKKLGYVPDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDC 874
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ KY+S A R REI + D RFHHF++G CSC D W
Sbjct: 875 HTAAKYISLA----RNREIFLRDGGRFHHFMNGECSCNDRW 911
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 141/337 (41%), Gaps = 77/337 (22%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEK-------------MPE 67
++ + C L L LG++VHA L+ G ++ CA + ++EK P
Sbjct: 135 TVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPL 194
Query: 68 RNVFSWTSMMGMYNVLG-YYEEIVNLFYLL-------IDEGVYK---ACSELKDHRVGKD 116
+ F W +++ M N+ +E+ + L + D + K AC +L+ GK
Sbjct: 195 QEDFLWNTIV-MANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ 253
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ Y+I N + ++ M+ + R+E+A F+ + NL+
Sbjct: 254 IHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLA-------------S 300
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ + S VN L + R ++ + K +++WN++L+G+ L G E +
Sbjct: 301 WNSIISSYAVNGCLNGAWDLFREMESSSIK------PDIITWNSLLSGHLLQGSYENV-- 352
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
L + +P++ S++ L A ++ F LGKEIHGY++R ++
Sbjct: 353 ----------LTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYD 402
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+V SL+DMY + ++K E
Sbjct: 403 V----------------YVCTSLVDMYIKNDCLEKAE 423
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 112/264 (42%), Gaps = 35/264 (13%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G E+H LK+ + D+ ++ +L++ Y KC + A+ F + + WN ++
Sbjct: 150 GMEVHACLLKRG-FQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIV---- 204
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ R E E ALE RM + ++ +L AC +++ GK+IHG
Sbjct: 205 MANLRSE--------RWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHG 256
Query: 287 YVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLIDMYGRCGAIQK 331
YV+R +T + +++S+ L F WNS+I Y G +
Sbjct: 257 YVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCL-- 314
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI 391
N W F M+ +++P + + ++ G +++ L ++ + + C+
Sbjct: 315 NGAWDLFREMESS-SIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITS 373
Query: 392 AEHAARHLFELEPLSSGK-VHSFI 414
A A + EL + GK +H +I
Sbjct: 374 ALQA---VIELGYFNLGKEIHGYI 394
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 63/329 (19%), Positives = 133/329 (40%), Gaps = 54/329 (16%)
Query: 148 MASGEFEEKDFS-------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
++S +F FS + L +E+H +K + + ++ S+M Y +
Sbjct: 21 VSSPQFSSPKFSPFFHPLGGIRTLNSVRELHAQMIKMPKKGNLVTMDGSMMRNYLEFGDF 80
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
+ A F ++ + WN+ L +A G GD LE F + ++
Sbjct: 81 ESATKVFFVGFARNYLLWNSFLEEFASFG-----------GDSHEILEVFKELHDKGVKF 129
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
++ +L+ VL C + LG E+H +L+ Q+ + A LI
Sbjct: 130 DSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCA----------------LI 173
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA--RAGQFDDTLNFMKKMP 378
++Y +C I + + ++ P E + ++A R+ +++D L ++M
Sbjct: 174 NLYEKCLGIDR---------ANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRM- 223
Query: 379 FEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFIA--GDTSHSLVHKISEKLMRLYS 435
+ +SA+ + I + + +L L+ GK +H ++ G S++ I ++ +YS
Sbjct: 224 -QSASAKATDGTIVK-LLQACGKLRALNEGKQIHGYVIRFGRVSNT---SICNSIVSMYS 278
Query: 436 EIKKIGYMKRIPACGHSEKLALAFGLIST 464
++ + + LA +IS+
Sbjct: 279 RNNRLELARAVFDSTEDHNLASWNSIISS 307
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 210/502 (41%), Gaps = 142/502 (28%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F + +L GK++H H K SD + N+LM+ Y+ C L A F K+ K +VS
Sbjct: 85 FKSCGVLCEGKQLHCHSTKLG-FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVS 143
Query: 218 WNAMLAGYALGGFREE--------------------ITGFTQYGDGETALEFFSRMIQTD 257
W M+ YA E I G + D E AL F+ M +
Sbjct: 144 WATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG 203
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF--- 314
++ + ++++ +L AC + +LGK +H Y+ + I++ +G AL+ + GS
Sbjct: 204 VKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYA-KCGSIESA 262
Query: 315 -------------VWNSLIDMYGRCGAIQK------------------------------ 331
W +LI CG K
Sbjct: 263 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 322
Query: 332 ---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS----- 383
NEG YF M +Y ++P++E Y CMVD+L RAG+ + + ++ MP P
Sbjct: 323 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 382
Query: 384 -AEPC----NPDIAEHAARHLFELEPLSSGK----------------------------- 409
C N +AE AA+ L EL+P + G
Sbjct: 383 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNI 442
Query: 410 --------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
VH F+ GD SH +I E L + +K GY+
Sbjct: 443 KKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDE 502
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
K HSEKLA+AFGL+ST+PG+P+RV+KNLR+C DCHS K++S+ REI
Sbjct: 503 KEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEV----YNREI 558
Query: 502 IMIDNYRFHHFVDGACSCGDYW 523
I+ D RFHHF G+CSC D+W
Sbjct: 559 IVRDRNRFHHFTKGSCSCRDFW 580
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 181/689 (26%), Positives = 278/689 (40%), Gaps = 206/689 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+A + L+LG +VHA + G F+ +F M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKDHRVGK 115
R++ SW ++M + E + LF+ V K C+ LK + +
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------SGEFEE 155
++ ++ F V + D + KCG + A SG +
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382
Query: 156 KD--------------------FSNLSLLKHGKEIHPHHLKKDDLESDL----LVNNSLM 191
D F+ ++LK I P + ++++ V +L+
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALL 442
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
Y+K + A F I+QK +V+W+AML+ +A Q GD E A F+
Sbjct: 443 ASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHA------------QAGDCEGATYLFN 490
Query: 252 RMIQTDMQPNTISLSGVLAACA-QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-- 308
+M ++PN ++S V+ ACA G G++ H +++ + V AL+S+
Sbjct: 491 KMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550
Query: 309 --LGTGSFV-----------WNSLIDMYGRCG---------------AIQKN-------- 332
+ + V WNS+I Y + G IQ +
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610
Query: 333 ----------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
EG +YF+ M +++ + P ME Y CMVDL +RAG+ D+T++ ++ MPF P+
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPF-PA 669
Query: 383 SA-------EPC----NPDIAEHAARHLFELEPLSSG----------------------- 408
A C N ++ + +A L LEP S
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRK 729
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY------ 442
KVHSFIA D SH + +I +KL + + +K+ GY
Sbjct: 730 LMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSF 789
Query: 443 --------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSE+LALAFGLI+T PG+PL+++KNLR+CGDCH K VS E
Sbjct: 790 VLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIE- 848
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
+REIIM D RFHHF GACSCGD+W
Sbjct: 849 ---DREIIMRDCSRFHHFNGGACSCGDFW 874
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 142/361 (39%), Gaps = 93/361 (25%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-------------------LCAFLGMF 62
+ T + + + C + + LG Q+H + CG + +C + +F
Sbjct: 99 SATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVF 158
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHR 112
E MP++NV +WTS++ + E++ LF+ + EG++ A +
Sbjct: 159 EGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALD 218
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHGKE 169
+G+ V+ + + V +++M+ KCG +E A F E +D + + L G +
Sbjct: 219 LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278
Query: 170 IHPHHLK-----------------------------------KDDLESDLL--------- 185
++ L+ L S +L
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338
Query: 186 VNNSLMDFYAKCRYLKVAHCKFS-KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V +L D Y+KC L A FS +++VSW A+ I+G Q GD
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI------------ISGCIQNGDIP 386
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ FSRM + + PN + S +L A + L +IH V++ + Q VG AL+
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALL 442
Query: 305 S 305
+
Sbjct: 443 A 443
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H +K ++ SL+D Y KC + F + +K++V+W ++L G A
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E+ + F RM + PN + + VL+A A LG+ +H
Sbjct: 178 HAQMHSEV------------MALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHA 225
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
++ G + FV NSL++MY +CG ++
Sbjct: 226 QSVKF----------------GCRSSVFVCNSLMNMYAKCGLVE 253
>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 952
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 181/725 (24%), Positives = 286/725 (39%), Gaps = 221/725 (30%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------- 59
+D PD VT + I C L +L+ G +H + G+ F+
Sbjct: 235 LDGVKPDP--VTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLC 292
Query: 60 -----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKA 104
+F+ MP RNV +W S+ Y G+ ++ +N+F + GV A
Sbjct: 293 VREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPA 352
Query: 105 CSELKDHRVGKDVYDYMIS-------------IKFEGNA-CVK--RPVLDM--------- 139
CS+LKD + GK ++ + + + N CV+ + V D+
Sbjct: 353 CSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTW 412
Query: 140 ------FIKCGRMEMASGEFEEKDF-----------------SNLSLLKHGKEIHPHHLK 176
++ CG + F E S+L LK GK IH ++
Sbjct: 413 NSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVR 472
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--- 233
+E D+ V N+L+ YAKC ++ A F I + + SWN +L Y E+
Sbjct: 473 HGMVE-DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLY 531
Query: 234 --------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
I G + E A+E F +M +P+ ++ +L AC+
Sbjct: 532 MFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACS 591
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG---------------SFVWNS 318
+ ++GKEIH YV RH AL+ + G F WN+
Sbjct: 592 LSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNT 651
Query: 319 LIDMYGRCG---------------------------------AIQKNEGWRYFEMMKKEY 345
+I G G ++ EG + F M +++
Sbjct: 652 MIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDH 711
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHA 395
+EP E Y C+VD+ +RAG ++ F+++MP EP++ C N ++A+ +
Sbjct: 712 LVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKIS 771
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
A+ LFE++P S +VH+
Sbjct: 772 AKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHT 831
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F+AGD S+ KI L L+++IK GY K C HSEKLA+A
Sbjct: 832 FVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVA 891
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
FG+++ + S +RV KNLR+CGDCH+ KY+S I++ D+ RFHHF +G CS
Sbjct: 892 FGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVG----VTIVVRDSLRFHHFKNGNCS 947
Query: 519 CGDYW 523
C D+W
Sbjct: 948 CKDFW 952
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/401 (22%), Positives = 167/401 (41%), Gaps = 105/401 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ + M L +T + I C L +L+ G ++H ++ G+ F+
Sbjct: 128 VFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYA 187
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ MP R+V +W S+ Y G+ ++ +N+F ++ +GV
Sbjct: 188 KCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSC 247
Query: 102 -YKACSELKDHRVGKDVYDY-----MISIKFEGNA---------CVK--RPVLDM----- 139
ACS+L+D + GK ++ + M+ F NA CV+ + V D+
Sbjct: 248 ILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRN 307
Query: 140 ----------FIKCGRMEMASGEFEEKDF-----------------SNLSLLKHGKEIHP 172
++ CG + F E S L LK GK IH
Sbjct: 308 VITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHG 367
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+K +E D+ V +L++ YA C ++ A F + +++V+WN++ + Y GF +
Sbjct: 368 FAVKHGMVE-DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQ 426
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+ L F M+ ++P+ +++ +L AC+ ++ K GK IHG+ +RH
Sbjct: 427 K------------GLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRH- 473
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G+ FV N+L+ +Y +C +++ +
Sbjct: 474 ---------------GMVEDVFVCNALLSLYAKCVCVREAQ 499
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 109/256 (42%), Gaps = 44/256 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD+ + N+ + Y KC+ ++ A F + + +V+WN++ A Y GF ++
Sbjct: 73 SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQ-------- 124
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
L F +M ++ N +++S +L C+ ++ K GKEIHG+V+RH
Sbjct: 125 ----GLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRH---------- 170
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G+ FV ++ ++ Y +C ++ E F++M + + +
Sbjct: 171 ------GMVEDVFVSSAFVNFYAKCLCVR--EAQTVFDLMPHR-----DVVTWNSLSSCY 217
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFIAGDTSH 420
G LN ++M + +P A +L+ L SGK +H F H
Sbjct: 218 VNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS---DLQDLKSGKAIHGFA---LKH 271
Query: 421 SLVHK--ISEKLMRLY 434
+V +S L+ LY
Sbjct: 272 GMVENVFVSNALVNLY 287
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 157/538 (29%), Positives = 235/538 (43%), Gaps = 139/538 (25%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V+KAC + R G+ V+ + + + V V+ M++ CG ME A F + F +
Sbjct: 118 VFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVD 177
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
KK ++ D+++ N ++D Y + L+VA F ++ Q+ +VSWN
Sbjct: 178 --------GCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNV 229
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+AGYA Q G + A+E F M ++ PN ++L VL A +++ +L
Sbjct: 230 MIAGYA------------QSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALEL 277
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLID---M 322
GK +H Y +R++I + +G ALI + +GL + V W+++I M
Sbjct: 278 GKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAM 337
Query: 323 YGRC-------------GAIQK-----------------NEGWRYFEMMKKEYNMEPAME 352
+GR G + NEG +F+ M + +EP +E
Sbjct: 338 HGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIE 397
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG +++ + MP +P C N ++ + A HL EL
Sbjct: 398 HYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMEL 457
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
P SG +H F+ D S
Sbjct: 458 APHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDS 517
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H KI L + + +GY K HSEK+A+AFGLIST
Sbjct: 518 HPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQ 577
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P +PLR+ KNLR+C DCHS K +SK K R+II+ D RFHHFV+G+CSC DYW
Sbjct: 578 PQTPLRITKNLRICEDCHSSIKLISKIYK----RKIIVRDRKRFHHFVNGSCSCMDYW 631
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF-----------YLLIDEGVY 102
EL +F++MP+R+V SW M+ Y G+++E V +F Y+ + V
Sbjct: 208 ELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTL-VSVL 266
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
A S L +GK V+ Y + + + ++DM+ KCG +E A FE
Sbjct: 267 PAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE 318
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 219/509 (43%), Gaps = 143/509 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K ++LS + G+ +H L+ LE D V SL+D Y KC + A F K+
Sbjct: 112 FVLKSCADLSRVCMGRCVHGQGLRVG-LEGDFYVGASLIDMYVKCGVIGDARKLFDKMIV 170
Query: 213 KHLVSWNAMLAGYALGG-------------------FREEITGFTQYGDGETALEFFSRM 253
+ + SWNA++AGY G + I+G+TQ G E AL F M
Sbjct: 171 RDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEM 230
Query: 254 IQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS------ 305
+Q ++M+PN +++ VL ACAQ + G+ IH + + L++ V AL
Sbjct: 231 LQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCY 290
Query: 306 -----------IQGLGTGSFVWNSLIDMYGR--CG-------------AIQKNE------ 333
I G WN++I Y CG +Q +
Sbjct: 291 SLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGL 350
Query: 334 ------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
G +F M +++EP +E Y C+VDLL RAG+ + + +MP +
Sbjct: 351 LSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQA 410
Query: 382 SSA------EPC----NPDIAEHAARHLFELEPLSSG----------------------- 408
+ C N +IAE AAR LF LEP +SG
Sbjct: 411 GPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRA 470
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
K H F+ D SH +I + L L +IK GY+
Sbjct: 471 LLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSF 530
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSEKLA+AFGL++T PG LRV KNLR+CGDCH+ TK++SK
Sbjct: 531 VLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKI-- 588
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D RFH F DG+CSCGDYW
Sbjct: 589 --YEREIIVRDLNRFHCFKDGSCSCGDYW 615
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 165/651 (25%), Positives = 271/651 (41%), Gaps = 197/651 (30%)
Query: 8 LLLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------ 53
L ++ +D+ + PD+ TV AL + C ++ L++G + A+ + G+
Sbjct: 105 LFVEMLDVASVCPDQHTVACAL--KSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIH 162
Query: 54 ------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107
++ A +F+ + E V W +++ Y G + E+V +F +++ GV
Sbjct: 163 MYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGV------ 216
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
+D + ++ + CGR+ A K G
Sbjct: 217 ---------AFDEIT-------------LVSVVTACGRIGDA---------------KLG 239
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K + ++ + L + + +L+D YAKC L A F ++ + +V+W+AM++GY
Sbjct: 240 KWV-AEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGY-- 296
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
TQ AL FS M +++PN +++ VL+ACA + + GK +H Y
Sbjct: 297 ----------TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSY 346
Query: 288 VLRHHIQLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMYG-------- 324
+ R + L+ +G AL+ +++ + S+ W +LI
Sbjct: 347 IRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREA 406
Query: 325 -------RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVD 359
R +I+ EG R+F+ M ++Y ++P E Y C+VD
Sbjct: 407 LELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVD 466
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK 409
LL RAG D+ F++ MP EP++ C N +I E A + + L P SG
Sbjct: 467 LLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGD 526
Query: 410 -------------------------------------------VHSFIAGDTSHSLVHKI 426
V F A D+ H + +I
Sbjct: 527 YILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEI 586
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
+K+ + IK GY+ K + HSEKLA+AFGL+ PG+ +R+
Sbjct: 587 YQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRL 646
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCHS TK +SK REI++ D RFHHF DG CSC DYW
Sbjct: 647 SKNLRVCTDCHSATKLISKV----YNREIVVRDRNRFHHFKDGTCSCNDYW 693
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 175/713 (24%), Positives = 279/713 (39%), Gaps = 210/713 (29%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-- 60
+K L + M + +T+ + C L G +VHA ++ G +G
Sbjct: 139 VKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTA 198
Query: 61 ----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---- 100
+F+ + R+V ++ M+G Y G +E+ LFY + G
Sbjct: 199 LVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258
Query: 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+ C + GK V+ ++ + V ++ M+ CG +E A F+
Sbjct: 259 KISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFD 318
Query: 155 E---KDFSNLSL---------------------------------------------LKH 166
+D + ++ L H
Sbjct: 319 NMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNH 378
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+EIH + +DLLV+ +L+ YAKC +K A F + ++ +VSW+AM+ Y
Sbjct: 379 AREIHSQ-VDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYV 437
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G+ G A E F M +++++P+ ++ +L AC + +G EI+
Sbjct: 438 ENGY------------GTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYT 485
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGRCGAIQ 330
++ + +G ALI I GS WN++I Y G +
Sbjct: 486 QAIKADLVSHVPLGNALI-IMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAR 544
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ +EG R+F + + + P ++ Y CM
Sbjct: 545 EALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCM 604
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS- 406
VDLL RAG+ D+ +K MP +P+S+ C N D+AE AA ++P
Sbjct: 605 VDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDG 664
Query: 407 ------------------------------------------SGKVHSFIAGDTSHSLVH 424
+GKVH+F+ D SH LV
Sbjct: 665 AVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVG 724
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I +L RL + IK+ GY+ K HSEKLA+A+G++S G+P+
Sbjct: 725 EIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPI 784
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+ KNLR+C DCHS +K++SK REII D RFHHF DG CSCGDYW
Sbjct: 785 RIYKNLRVCSDCHSASKFISKVTG----REIIARDASRFHHFKDGVCSCGDYW 833
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 104/444 (23%), Positives = 175/444 (39%), Gaps = 115/444 (25%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
TY +FQRC +L + LG QV H+I G ++L + G +F+ +
Sbjct: 59 TYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSV 118
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+ V +W +++ Y +G+ +E LF ++DEG V ACS GK
Sbjct: 119 ENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGK 178
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------SG 151
+V+ +++ F + + ++ M++K G M+ A SG
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238
Query: 152 EFEE---------------KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVN 187
++E+ S LS+L GK +H + L D+ V
Sbjct: 239 DWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNA-GLVDDIRVA 297
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
SL+ Y C ++ A F +K + +VSW M+ GYA + G+ E A
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYA------------ENGNIEDAF 345
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F+ M + +QP+ I+ ++ ACA +EIH V I
Sbjct: 346 GLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQV----------------DIA 389
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG-- 365
G GT V +L+ MY +CGAI+ + + F+ M + + + M+ G
Sbjct: 390 GFGTDLLVSTALVHMYAKCGAIK--DARQVFDAMPRR-----DVVSWSAMIGAYVENGYG 442
Query: 366 -QFDDTLNFMKKMPFEPSSAEPCN 388
+ +T + MK+ EP N
Sbjct: 443 TEAFETFHLMKRSNIEPDGVTYIN 466
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 30/196 (15%)
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RVG + D + + GN R + +F +C + A+ + +D +++ G+++
Sbjct: 37 RRVGAN--DVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDH----IIQGGRQL 90
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ + L N+L+ Y+ C + A F ++ K +V+WNA++AGYA
Sbjct: 91 NIYEL------------NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYA---- 134
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G + A F +M+ ++P+ I+ VL AC+ G GKE+H V+
Sbjct: 135 --------QVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVT 186
Query: 291 HHIQLSTGVGIALISI 306
+G AL+S+
Sbjct: 187 AGFVSDFRIGTALVSM 202
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 170/662 (25%), Positives = 275/662 (41%), Gaps = 206/662 (31%)
Query: 60 GMFEKMPERNVFSWTSMMGMY--------------NVLGYYEEIVNLFYLLIDEGVYKAC 105
+F+++P+ N+++W +++ Y ++L E++ N F V KA
Sbjct: 80 NLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPF---VIKAA 136
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----------- 154
SELK RVG V+ I + F + + ++ + CG + MA F+
Sbjct: 137 SELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWN 196
Query: 155 -----------EKDFSNLSLLKHGKEIHPHHL----------KKDDLE------------ 181
+D L L + + P+ + KK DLE
Sbjct: 197 SMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERK 256
Query: 182 ---SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA------------ 226
DL + N+++D Y KC + A F ++ ++ + SW ML GYA
Sbjct: 257 GIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVF 316
Query: 227 -------LGGFREEITGFTQYGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGF 278
+ + I+ + Q G + AL F+ + + + +P+ ++L L+ACAQ+
Sbjct: 317 NAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAI 376
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS----------------FVWNSLI-- 320
LG IH Y+ R I L+ + +L+ + GS +VW+++I
Sbjct: 377 DLGGWIHVYIKREGIVLNCHLISSLVDMYA-KCGSLEKALEVFYSVEERDVYVWSAMIAG 435
Query: 321 -DMYGRCGA------------IQKN------------------EGWRYFEMMKKEYNMEP 349
M+GR A ++ N EG +F M+ Y + P
Sbjct: 436 LGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVP 495
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHL 399
M+ Y CMVD+L RAG ++ + + +M PS++ C N ++ E A+ L
Sbjct: 496 EMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQL 555
Query: 400 FELEPL-------------------------------------------SSGKVHSFIAG 416
+LEP ++G VH F+ G
Sbjct: 556 LKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVG 615
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFGL 461
D +H L I KL + +++K +GY +K HSEKLA+AFGL
Sbjct: 616 DNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGL 675
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
++ +P P+RV+KNLR+CGDCH+ K VS R +R+I++ D YRFHHF DG CSC D
Sbjct: 676 VTLAPSQPIRVVKNLRICGDCHAFAKLVS----RVYDRDILLRDRYRFHHFRDGHCSCMD 731
Query: 522 YW 523
YW
Sbjct: 732 YW 733
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 60/343 (17%)
Query: 43 QVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
+VHA ++ G+ F+ +F+ S + ++ L Y NLF + +Y
Sbjct: 43 EVHARMLRTGL-------FFDPFSASKLFT-ASALSSFSTLDYAR---NLFDQIPQPNLY 91
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA-SGEFEEKDFSNL 161
+ ++ + D + + LD+ KC + + F K S L
Sbjct: 92 TWNTLIRAYASSSDPFQSFVIF------------LDLLDKCEDLPNKFTFPFVIKAASEL 139
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
+ G +H +K DL + NSL+ FY C L +A F I K +VSWN+M
Sbjct: 140 KASRVGTAVHGMAIKLS-FGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSM 198
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++ +A G E+ ALE F +M + ++ PN++++ GVL+ACA+ + G
Sbjct: 199 ISAFAQGNCPED------------ALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFG 246
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+ + Y+ R +G+ + N+++DMY +CG++ ++ + F+ M
Sbjct: 247 RWVCSYIER----------------KGIKVDLTLCNAMLDMYTKCGSV--DDAQKLFDEM 288
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
E + + M+D A+ G +D MP + +A
Sbjct: 289 P-----ERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAA 326
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 178/633 (28%), Positives = 267/633 (42%), Gaps = 168/633 (26%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL 95
+N LGI++ VCG E + +F+++P++NV + M+ Y Y + + +F
Sbjct: 69 SNPSLGIKLMRAYAVCG-EPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKN 127
Query: 96 LIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
+ G V KA S +D VG ++ ++ + + N V ++ M+ KCG
Sbjct: 128 MAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 187
Query: 146 MEMASGEFEE---KDFSNLSLLKHG--------------KEIHPHHLKKD-DLESDLL-- 185
+ A ++ +D + + L G KE+ LK D + LL
Sbjct: 188 LVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPA 247
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+ +D + + + F K+ K LVSWN M+A Y E
Sbjct: 248 VTNTCLDNVSFVKEM------FMKLANKSLVSWNVMIAVYMNNSMPAE------------ 289
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F +M + P+ IS++ VL AC + LG+ IH YV+R +Q + + ALI
Sbjct: 290 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALID 349
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQK------------------- 331
+ Q W S+I YG G +
Sbjct: 350 MYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIA 409
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+EG YF++M +E + P +E + CMVDLL RAGQ D+ F+K+M
Sbjct: 410 FVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQM 469
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P EP+ C N I AA LF+L P SG
Sbjct: 470 PMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVT 529
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
+VH+F+AGD SH +I E+L ++K+ GY+
Sbjct: 530 TVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVP 589
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSEKLA+AF +++T+PGSP+R+ KNLR+CGDCH K +S
Sbjct: 590 ETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLIS 649
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI + D RFHHF +G CSCGDYW
Sbjct: 650 KIVG----REITIRDTNRFHHFYNGVCSCGDYW 678
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 86/214 (40%), Gaps = 35/214 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+K+ K++H DL S+ + LM YA C F +I +K++V +N M+
Sbjct: 51 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y Y D AL F M + P+ + VL A + + +G +
Sbjct: 111 SYVNNHL---------YSD---ALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQ 158
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
IH V+R GL FV N LI MYG+CG + E R + M
Sbjct: 159 IHAAVVR----------------VGLDLNVFVGNGLISMYGKCGCLV--EACRVLDQMPC 200
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + +V AR GQFDD L K+M
Sbjct: 201 R-----DVVSWNSLVAGCARNGQFDDALEVCKEM 229
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 170/624 (27%), Positives = 264/624 (42%), Gaps = 178/624 (28%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84
Y+ + +C L L+ G +HAH+ E L F ++ MY G
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNF-------------ILNMYAKCG 154
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144
EE +LF D KD+ + + I + L +F K
Sbjct: 155 SLEEAQDLF----------------DKMPTKDMVSWTVLISGYSQSGQASEALALFPK-- 196
Query: 145 RMEMASGEFEEKDFSNLSLLK---------HGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
M F+ +F+ SLLK HG+++H LK + ++ V +SL+D YA
Sbjct: 197 ---MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYG-YDMNVHVGSSLLDMYA 252
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
+ +++ A F+ + K++VSWNA++AG+A + G+GE + F +M++
Sbjct: 253 RWAHMREAKVIFNSLAAKNVVSWNALIAGHA------------RKGEGEHVMRLFLQMLR 300
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF- 314
+P + S V ACA + GK +H +V++ Q +G LI + +GS
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYA-KSGSIK 359
Query: 315 ---------------VWNSLIDMYGRCG---------------AIQKNE----------- 333
WNS+I Y + G +Q NE
Sbjct: 360 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 419
Query: 334 -------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-- 384
G YFE+MKK + +E + + +VDLL RAG+ ++ F+++MP +P++A
Sbjct: 420 HSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVW 478
Query: 385 ----EPC----NPDIAEHAARHLFELEPLSSG---------------------------- 408
C N D+ +AA +FEL+P SG
Sbjct: 479 GALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKES 538
Query: 409 ---------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------- 443
+VH F+A D SH + +I ++ +IK+IGY+
Sbjct: 539 GVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFM 598
Query: 444 ----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
+ + HSEKLALAF ++ T PG +R+ KN+R+CGDCHS K+ S R R
Sbjct: 599 NQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFAS----RVLGR 654
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF+ G CSC DYW
Sbjct: 655 EIIVRDTNRFHHFLHGMCSCRDYW 678
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 151/350 (43%), Gaps = 53/350 (15%)
Query: 136 VLDMFIKCGRMEMASGEFEE--KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
VLD+ I CG +E + + + L LK G+ IH H ++ E DL++ N +++
Sbjct: 92 VLDL-INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAH-IQSSTFEDDLVLLNFILNM 149
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
YAKC L+ A F K+ K +VSW +++GY +Q G AL F +M
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGY------------SQSGQASEALALFPKM 197
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI------- 306
+ QPN +LS +L A G+++H + L++ ++ VG +L+ +
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHM 257
Query: 307 -------QGLGTGSFV-WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
L + V WN+LI + R G + R F M ++ EP Y +
Sbjct: 258 REAKVIFNSLAAKNVVSWNALIAGHARKG--EGEHVMRLFLQMLRQ-GFEPTHFTYSSVF 314
Query: 359 DLLARAGQFDD---TLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEPL 405
A +G + + K +P + A+ + A+ R L + + +
Sbjct: 315 TACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIV 374
Query: 406 SSGKVHSFIAGDTSHSL---VHKISEKLMRLYSEIKKIGYMKRIPACGHS 452
S +S I+G H L ++ E++++ + +I ++ + AC HS
Sbjct: 375 S---WNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 421
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY+ +F C +LE G VHAH+I G + A++G +F ++
Sbjct: 309 TYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 368
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
++++ SW S++ Y G E + LF ++ V ACS G+
Sbjct: 369 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 428
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
++ M K E V+D+ + GR+ A+ EE
Sbjct: 429 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEE 468
>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Vitis vinifera]
Length = 719
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 163/589 (27%), Positives = 241/589 (40%), Gaps = 205/589 (34%)
Query: 68 RNVFSWTSMMGMYN-------VLGYYEEIV------NLFYLLIDEGVYKACSELKDHRVG 114
R+ SW SM+ Y LG ++E+V ++F L V A + L+D G
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL---ASVLTAFTCLEDLSGG 259
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGR--------------------MEMASGEFE 154
+ +I F N+ V ++D++ KCG M SG +
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319
Query: 155 EKDF------------------------------SNLSLLKHGKEIHPHHLKKDDLESDL 184
++F SNLS GK+IH LK D + +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V+N+L+ Y+KC L+ A F ++ + + VS N+M+AGYA Q+G
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA------------QHGIEM 427
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+L F M++ + P +I+ VL+ACA
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHT----------------------------- 458
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
GR EGW YF MMK+++N+EP E Y CM+DLL RA
Sbjct: 459 -------------------GRV-----EEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRA 494
Query: 365 GQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------ 408
G+ + N + +MPF P S C N ++A AA + +LEP ++
Sbjct: 495 GKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLS 554
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
++H F+A D+SH ++ +I E L
Sbjct: 555 NMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLE 614
Query: 432 RLYSEIKKIGYM-----------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+ ++K+ GY+ K I HSEKLA+AFGLIST G P+ V+K
Sbjct: 615 EMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVK 674
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K++S REI + D +RFH F +G CSCGDYW
Sbjct: 675 NLRICGDCHNAIKFISAIAG----REITVRDAHRFHCFKEGQCSCGDYW 719
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 106/283 (37%), Gaps = 67/283 (23%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
K C +D GK ++ I + + ++ KCGR+ A F+
Sbjct: 16 KTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ-------- 67
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
D + ++ N+++ YAK +AH F +I + LVS+N ++
Sbjct: 68 ---------------DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ YA G+ AL FS M + + + +LS V+ AC G L
Sbjct: 113 SAYA------------DCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVG--LIG 158
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG------------LGTGSF----VWNSLIDMYGRC 326
++H + V AL++ G G G WNS+I YG
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG-- 216
Query: 327 GAIQKNEGWR----YFEMMKKEYNME-----PAMEQYCCMVDL 360
Q EG + + EM+++ N++ + + C+ DL
Sbjct: 217 ---QHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256
>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
Length = 782
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 174/696 (25%), Positives = 272/696 (39%), Gaps = 215/696 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FEK 64
VTY I C +L+ G+++H ++ G E F+G F++
Sbjct: 107 VTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR 166
Query: 65 MPERNVFSWTSMMG-------------MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+ R+V SWT+M+ +Y + + N L V+ A +
Sbjct: 167 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT---VFNAYGDPHYL 223
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD----------- 157
GK +Y + S E + V ++MF G + A FE+ +D
Sbjct: 224 SEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFY 283
Query: 158 ----------------------------------FSNLSLLKHGKEIHPHHLKKDDLESD 183
+++L+ L GK IH +K+ + D
Sbjct: 284 VQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIH-ELVKEAGYDRD 342
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V +LM Y +C A F + K +++W M YA GFR+E
Sbjct: 343 VVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKE---------- 392
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ F M +P + +L VL CA + + G++IH +++ + ++ V AL
Sbjct: 393 --ALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETAL 450
Query: 304 ISIQG---------------LGTGSFVWNSLIDMYGRCGAIQKN---------------- 332
I++ G VWNS++ Y + G +
Sbjct: 451 INMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADA 510
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+G++YF M +++++ P E Y C+VDLL RAG+ + ++ +
Sbjct: 511 VSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVL 570
Query: 376 K-----------MPFEPSSAEPCNPDIAEHAARHLFELEPLSSG---------------- 408
K M + D A+ AA + E +P SG
Sbjct: 571 KLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWD 630
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+VH F+ GD SH H I +L L SE++ G
Sbjct: 631 GVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAG 690
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K HSE+LA+AFGL+ST PG+PLRVIKNLR+C DCH+ TK
Sbjct: 691 YIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATK 750
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y+SK R REI++ D +RFH+F DG CSC DYW
Sbjct: 751 YISKL----RGREILVRDTHRFHNFKDGRCSCKDYW 782
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/446 (21%), Positives = 174/446 (39%), Gaps = 117/446 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL---------IVCG--VELCAFLG------ 60
PD T + + QRC N++ G +VH H+ +VCG +++ A G
Sbjct: 3 PD--TAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+FE + ++VF+WT M+G+Y G Y+ + +FY + +E + AC+ +
Sbjct: 61 QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKH 166
+ G +++ ++ FEG+ V +++M+ KCG + A F E +D + + +
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180
Query: 167 GKEIH----------------------------------PHHLKKDD----------LES 182
H PH+L + +ES
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NS M+ + L A F + + +V+WN + IT + Q +
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIV------------ITFYVQNEN 288
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+ F R+ Q ++ N I+ +L + GK IH
Sbjct: 289 FGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIH----------------E 332
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF-EMMKKEYNMEPAMEQYCCMVDLL 361
L+ G V +L+ +YGRC A + W+ F +M K+ + + M
Sbjct: 333 LVKEAGYDRDVVVATALMSLYGRCEA--PGQAWKIFVDMGSKD------VITWTVMCVAY 384
Query: 362 ARAGQFDDTLNFMKKMPFE---PSSA 384
A+ G + L ++M E P+SA
Sbjct: 385 AQNGFRKEALQLFQEMQLEGRRPTSA 410
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 31/176 (17%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAF 58
K L Q M L + T + C L L+ G Q+H+H+I G + A
Sbjct: 391 KEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETAL 450
Query: 59 LGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----- 100
+ M FEKM +R++ W SM+G Y GYY+E + LF + +G
Sbjct: 451 INMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADA 510
Query: 101 --VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP-----VLDMFIKCGRMEMA 149
S L D Y Y +++ + + P V+D+ + GR++ A
Sbjct: 511 VSFVSVLSALSHSGSVTDGYQYFVAM-LQDFSITPTPELYGCVVDLLGRAGRIQEA 565
>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
Length = 719
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 163/589 (27%), Positives = 241/589 (40%), Gaps = 205/589 (34%)
Query: 68 RNVFSWTSMMGMYN-------VLGYYEEIV------NLFYLLIDEGVYKACSELKDHRVG 114
R+ SW SM+ Y LG ++E+V ++F L V A + L+D G
Sbjct: 203 RDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL---ASVLTAFTCLEDLSGG 259
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGR--------------------MEMASGEFE 154
+ +I F N+ V ++D++ KCG M SG +
Sbjct: 260 LQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQ 319
Query: 155 EKDF------------------------------SNLSLLKHGKEIHPHHLKKDDLESDL 184
++F SNLS GK+IH LK D + +
Sbjct: 320 NEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRI 379
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V+N+L+ Y+KC L+ A F ++ + + VS N+M+AGYA Q+G
Sbjct: 380 SVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYA------------QHGIEM 427
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+L F M++ + P +I+ VL+ACA
Sbjct: 428 ESLHLFQWMLERQIAPTSITFISVLSACAHT----------------------------- 458
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
GR EGW YF MMK+++N+EP E Y CM+DLL RA
Sbjct: 459 -------------------GRV-----EEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRA 494
Query: 365 GQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------ 408
G+ + N + +MPF P S C N ++A AA + +LEP ++
Sbjct: 495 GKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLS 554
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
++H F+A D+SH ++ +I E L
Sbjct: 555 NMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLE 614
Query: 432 RLYSEIKKIGYM-----------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+ ++K+ GY+ K I HSEKLA+AFGLIST G P+ V+K
Sbjct: 615 EMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVK 674
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K++S REI + D +RFH F +G CSCGDYW
Sbjct: 675 NLRICGDCHNAIKFISAIAG----REITVRDAHRFHCFKEGQCSCGDYW 719
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 106/283 (37%), Gaps = 67/283 (23%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
K C +D GK ++ I + + ++ KCGR+ A F+
Sbjct: 16 KTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ-------- 67
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
D + ++ N+++ YAK +AH F +I + LVS+N ++
Sbjct: 68 ---------------DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ YA G+ AL FS M + + + +LS V+ AC G L
Sbjct: 113 SAYA------------DCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVG--LIG 158
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG------------LGTGSF----VWNSLIDMYGRC 326
++H + V AL++ G G G WNS+I YG
Sbjct: 159 QLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG-- 216
Query: 327 GAIQKNEGWR----YFEMMKKEYNME-----PAMEQYCCMVDL 360
Q EG + + EM+++ N++ + + C+ DL
Sbjct: 217 ---QHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDL 256
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 254/646 (39%), Gaps = 199/646 (30%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------- 60
D P++ T+ F+ L + +G QVHA + G F+G
Sbjct: 102 DSIQPND--FTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLT 159
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
MF++MPERN+ +W + + + G Y++ + F
Sbjct: 160 EEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAF---------------------- 197
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
I + EG P L F C + +G S L+ G+++H L
Sbjct: 198 ------IEFRHEG----WEPNLITF--CAFLNACAGA---------SYLRLGRQLHGFVL 236
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
+ E+D+ V N L+DFY KC + + FS I + + VSW +M+ Y
Sbjct: 237 QSG-FEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSY---------- 285
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Q + E A F R + ++P +S VL+ACA + ++GK +H ++ +
Sbjct: 286 --VQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVG 343
Query: 296 STGVGIALISIQGLGTGSF----------------VWNSLIDMYGR-------------- 325
+ VG AL+ + G GS WN++I Y
Sbjct: 344 NIFVGSALVDMYG-KCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEM 402
Query: 326 -CG--------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
CG A N G FE M+ Y +EP E Y C+VDLL RA
Sbjct: 403 TCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRA 462
Query: 365 GQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELEPLSSGK----- 409
G + F+KKMP P+ S ++ + AA +LFEL+PL SG
Sbjct: 463 GMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLS 522
Query: 410 --------------------------------------VHSFIAGDTSHSLVHKISEKLM 431
VH F A DTSH +I L
Sbjct: 523 NMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLA 582
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
+L E++ GY+ K + HSEK+ALAFGLIS G P+R+ KNLR
Sbjct: 583 KLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLR 642
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CGDCHS K++S REII+ DN FH F D CSC DYW
Sbjct: 643 ICGDCHSAIKFISGIVG----REIIVRDNNLFHRFRDNQCSCRDYW 684
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 35/206 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ H +K D + N L++ Y+K A S + +V+W A++AG
Sbjct: 25 GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS- 83
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q G +AL FS M + +QPN + A ++ +GK++H
Sbjct: 84 -----------VQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHA 132
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
++ G + FV S DMY + G + E + F+ M
Sbjct: 133 LAVK----------------AGQISDVFVGCSAFDMYSKAGLTE--EARKMFDEMP---- 170
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLN 372
E + + + G++DD L
Sbjct: 171 -ERNIATWNAYLSNSVLEGRYDDALT 195
>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 882
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 173/636 (27%), Positives = 258/636 (40%), Gaps = 190/636 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDH 111
+F++M R+ ++ +M+ Y L EE V +F +D+ V AC L+D
Sbjct: 264 VFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDL 323
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA-------------------SGE 152
+ K +Y+YM+ F + VK ++D++ KCG M A SG
Sbjct: 324 SLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Query: 153 FEEKDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+ D + L+ LK GK +H + +K + D
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSG-IYID 442
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L V+N+L+D YAKC + + F+ + V+WN + I+ ++GD
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTV------------ISACVRFGDF 490
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
T L+ ++M + + P+ + L CA + +LGKEIH +LR + +G AL
Sbjct: 491 ATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNAL 550
Query: 304 ISIQ---GLGTGSF------------VWNSLIDMYGRCGAIQK----------------- 331
I + G SF W +I YG G +K
Sbjct: 551 IEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDS 610
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+G FE MK Y ++P +E Y C+VDLL+R+ + F++
Sbjct: 611 VVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQ 670
Query: 376 KMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG----------------- 408
MP EP ++ C + AE +R + EL P G
Sbjct: 671 AMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KVH F +GD S I + L LYS + K GY
Sbjct: 731 VSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGY 790
Query: 443 M---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ KR CGHSE+LA+AFGL++T PG+PL+V+KNLR+C DCH TK
Sbjct: 791 IPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTK 850
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK REI++ D RFH F DG CSC D W
Sbjct: 851 LISKIVG----REILVRDANRFHLFKDGICSCKDRW 882
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 135/323 (41%), Gaps = 91/323 (28%)
Query: 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGM 61
+ V+ A I + +NL ++HA +I G++ F L +
Sbjct: 2 QTRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSV 61
Query: 62 FEKM-PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
F ++ P +NV+ W S++ ++ G++ + + + +L++ +V D Y +
Sbjct: 62 FRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFY------------GKLRESKVSPDKYTF 109
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
IK AC G + G+ K +L+ G
Sbjct: 110 PSVIK----AC-----------AGLFDAEMGDLVYKQ-----ILEMG------------F 137
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
ESDL V N+L+D Y++ L A F ++ + LVSWN++++GY+ G+ EE
Sbjct: 138 ESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE------- 190
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
ALE + + + + P++ ++S VL A A + K G+ +HG+ L+
Sbjct: 191 -----ALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLK---------- 235
Query: 301 IALISIQGLGTGSFVWNSLIDMY 323
G+ + S V N L+ MY
Sbjct: 236 ------SGVNSVSVVNNGLLAMY 252
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 30/184 (16%)
Query: 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
S F + S+ S L + IH + SD + L+D Y+ R + F
Sbjct: 5 VSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFF-SGKLIDKYSHFRAPASSLSVFR 63
Query: 209 KIK-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K++ WN++ I F++ G ALEF+ ++ ++ + P+ +
Sbjct: 64 RVSPAKNVYIWNSI------------IRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPS 111
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
V+ ACA + ++G ++ +L G + +V N+L+DMY R G
Sbjct: 112 VIKACAGLFDAEMGDLVYKQILE----------------MGFESDLYVGNALVDMYSRMG 155
Query: 328 AIQK 331
+ +
Sbjct: 156 LLSR 159
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 161/598 (26%), Positives = 255/598 (42%), Gaps = 161/598 (26%)
Query: 59 LGMFEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACS 106
L +F+++PERN F+W +++ + + + + +F ++ E V KAC+
Sbjct: 69 LSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACA 128
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK-----DFSNL 161
+ GK V+ ++ + V +L M++ CG ME A+ F D NL
Sbjct: 129 VMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNL 188
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
+ G+E ++++ N ++D YA+ LK A F ++ Q+ +VSWN M
Sbjct: 189 VRDERGREF------------NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVM 236
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKL 280
++GYA GF +E A+E F RM+Q D+ PN ++L VL A +++ +L
Sbjct: 237 ISGYAQNGFYKE------------AIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLEL 284
Query: 281 GKEIHGYVLRHHIQLSTGVGIALI-----------SIQGL----GTGSFVWNSLI----- 320
GK +H Y ++ I++ +G AL+ +IQ WN++I
Sbjct: 285 GKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAM 344
Query: 321 -----DMYGRCGAIQK-----------------------NEGWRYFEMMKKEYNMEPAME 352
D++ ++K +EG +F M ++P +E
Sbjct: 345 HGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIE 404
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFEL 402
Y CMVDLL RAG ++ + MP +P +S N I AA L ++
Sbjct: 405 HYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQM 464
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
P SG +H F+ D S
Sbjct: 465 APHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDS 524
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTS 465
HS I L + +++ G+M HSEK+A+AFGLIST
Sbjct: 525 HSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTP 584
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P +PL ++KNLR+C DCHS K +SK ER+I++ D RFHHF G+CSC DYW
Sbjct: 585 PKTPLCIVKNLRICEDCHSSMKLISKM----YERKIVIRDRKRFHHFEHGSCSCMDYW 638
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 178/638 (27%), Positives = 273/638 (42%), Gaps = 171/638 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----VELCAFLGM-------------FEKM 65
TY + Q C + LE G +VH H+ G V LGM F++M
Sbjct: 89 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEM 148
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PER+V SW M+ Y +G EE NLF + + Y + + + V KD + + +
Sbjct: 149 PERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGY-VKKDQPEEALVLY 207
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
L + + + + + + ++ GKEIH H + + L+SD +
Sbjct: 208 ----------SLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGH-IVRAGLDSDEV 256
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +SLMD Y KC + A F KI K +VSW +M+ Y E GF+
Sbjct: 257 LWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWRE--GFS------- 307
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
FS +I + +PN + SGVL ACA + +LG+++HGY+ R + +LI
Sbjct: 308 ---LFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLID 364
Query: 306 --------------IQGLGTGSFV-WNSLIDMYGRCGAIQKNEGWRYFEMMKK------- 343
+ G V SLI Y + G + +E +YF+++ K
Sbjct: 365 MYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNG--KPDEALKYFDLLLKSGTKPDH 422
Query: 344 ----------------------------EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
++++ + Y C+VDLLAR+G+F+ + +
Sbjct: 423 VTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLS 482
Query: 376 KMPFEPSS----------AEPCNPDIAEHAARHLFELEP-------------LSSGK--- 409
+MP +PS + N D+AE AA+ LF++EP ++GK
Sbjct: 483 EMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEE 542
Query: 410 ---------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
H FIA DTSH + ++I E L L ++K+ GY
Sbjct: 543 EGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGY 602
Query: 443 MKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+PA HSEKLA+AF ++ST G+ ++V KNLR C DCHS
Sbjct: 603 ---VPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSA 659
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK K R+I + D+ RFH F +G CSC DYW
Sbjct: 660 IKFISKITK----RKITIRDSTRFHCFENGQCSCRDYW 693
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 23/136 (16%)
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G+ L +++ +P + ++ C+Q + + GK++H HI+ S
Sbjct: 68 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVH-----EHIRTS------ 116
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G G +WN ++ MY +CG++ + + F+ M E + + MV+ A
Sbjct: 117 -----GFVPGIVIWNRILGMYAKCGSLV--DARKVFDEMP-----ERDVCSWNVMVNGYA 164
Query: 363 RAGQFDDTLNFMKKMP 378
G ++ N +MP
Sbjct: 165 EVGLLEEARNLFDEMP 180
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 168/629 (26%), Positives = 268/629 (42%), Gaps = 173/629 (27%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76
+PD + T+ + + C ++ + ELG+++H+ ++ G E AF+ + S+
Sbjct: 105 SPD--SFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKI-------------SL 149
Query: 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGKDVYDYMISIKFEGNACVKRP 135
+ +Y G+ + +F + D+ + + + VGK C R
Sbjct: 150 INLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK---------------C--RE 192
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP-----HHLKKDDLESDLLVNNSL 190
+DMF + M + F + LS K ++ ++ ++ + ++ V +L
Sbjct: 193 AIDMFRRLLEMGLRPDSFSLVEV--LSACKRTGDLRSGEWIDEYITENGMVRNVFVATAL 250
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
+DFY KC ++ A F + +K++VSW++M+ GYA G +E AL+ F
Sbjct: 251 VDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKE------------ALDLF 298
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---- 306
+M+ ++P+ ++ GVL +CA++ +LG + + ++ +G ALI +
Sbjct: 299 FKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKC 358
Query: 307 ----------QGL-GTGSFVWNSLI----------DMYGRCGAIQKN------------- 332
+G+ VWN+ I D G G ++K+
Sbjct: 359 GRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLL 418
Query: 333 ----------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
EG RYF M+ + + P +E Y CMVDLL RAG D+ +K MP E +
Sbjct: 419 CACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEAN 478
Query: 383 SA------EPC----NPDIAEHAARHLFELEPLSSGK----------------------- 409
+ C + + E + L LEP SG
Sbjct: 479 AIVWGALLGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSI 538
Query: 410 --------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------ 443
VH F+ GDTSH L KI KL L ++K GY+
Sbjct: 539 MSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHV 598
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
+ C HSEKLA+AFGLIST+P + V+KNLR+CGDCH K++S
Sbjct: 599 LFDIEEEEKEHFIGC-HSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHIS---- 653
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
R REII+ DN RFH F DG CSC DYW
Sbjct: 654 RIAGREIIVRDNNRFHCFTDGLCSCKDYW 682
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209
S + + S LKH K IH L+ L+ D + N ++ F + +
Sbjct: 9 SAGIKNRLIQGFSCLKHLKHIHAALLRLG-LDEDTYLLNKVLRFSFNFGNTNYSFRILDQ 67
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
K+ ++ +N M+ G L +E ++E + M + + P++ + VL
Sbjct: 68 TKEPNIFLFNTMIRGLVLNDCFQE------------SIEIYHSMRKEGLSPDSFTFPFVL 115
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
ACA+V +LG ++H V++ G +FV SLI++Y +CG I
Sbjct: 116 KACARVLDSELGVKMHSLVVK----------------AGCEADAFVKISLINLYTKCGFI 159
Query: 330 Q 330
Sbjct: 160 D 160
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 160/640 (25%), Positives = 271/640 (42%), Gaps = 183/640 (28%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ + C L +L LG +H ++I G++ ++++ ++M MY+ L + E
Sbjct: 112 VLKSCALLMDLNLGESLHGYIIRVGLDF-------------DLYTGNALMNMYSKLRFLE 158
Query: 88 EI--------------------VNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
E V +L ++ V K + + KD+ + I
Sbjct: 159 ESGRQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPE----KDLVSWNTIIAGN 214
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL---------KHGKEIHPHHLKKD 178
+ L M EM + F+ S+L GKEIH +++
Sbjct: 215 ARNGLYEETLRMI-----REMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQG 269
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L++D+ V +SL+D YAKC + + F+ + ++ +SWN+++AG G +E
Sbjct: 270 -LDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDE----- 323
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
L FF +M+ ++P + S S ++ ACA + LGK++HGY+ R+ +
Sbjct: 324 -------GLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIF 376
Query: 299 VGIALISIQG----LGTGSFV-----------WNSLI---DMYGRCG------------A 328
+ +L+ + + T + W ++I ++G+
Sbjct: 377 IASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEG 436
Query: 329 IQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
I+ N E W+YF M +++ + P +E Y + DLL RAG+ ++
Sbjct: 437 IKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEA 496
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------ 408
+F+ M P+ + C N D+AE A + E++P ++G
Sbjct: 497 YDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIYSAA 556
Query: 409 -------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
KV++F+AGD SH KI E + L +
Sbjct: 557 RRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELM 616
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+K GY+ K+ C HSE+LA+ FG+I+T G +RV KNLR+C DCH
Sbjct: 617 EKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCH 676
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ TK++SK REI++ DN RFHHF +G CSCGDYW
Sbjct: 677 TATKFISKIVG----REIVVRDNSRFHHFKNGTCSCGDYW 712
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
++ I +T +G +L F M+ + + P+ VL +CA + LG+ +HGY+
Sbjct: 73 AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYI 132
Query: 289 LRHHIQLSTGVGIALISI------------QGLGTGSFVWNSLIDM---YGRCGAIQKNE 333
+R + G AL+++ Q LG G V++ + + + ++
Sbjct: 133 IRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGE-VFDEMTERTRSVRTVSVLSEDS 191
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ FEMM E + + ++ AR G +++TL +++M
Sbjct: 192 VRKIFEMMP-----EKDLVSWNTIIAGNARNGLYEETLRMIREM 230
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 221/484 (45%), Gaps = 134/484 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L L+HG+ IH H L + SD+ V +LM FY KC L A F K++ + +
Sbjct: 119 KSCADLVALRHGRIIHGHVLV-NGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSV 177
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN+M++GY GF +E A+ F RM + ++PN+ + VL+ACA +
Sbjct: 178 VTWNSMISGYEQNGFAKE------------AIRLFDRMKEIGVEPNSATFVSVLSACAHL 225
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI-QGLGTGS--------------FVWNSLI 320
F LG +H Y + + + L+ +G +LI++ G S W ++I
Sbjct: 226 GAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMI 285
Query: 321 DMYGRCG---------------------------------AIQKNEGWRYFEMMKKEYNM 347
YG G A NEG R FE M++EY +
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRL 345
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------------------- 384
P +E + C+VD+L RAG D+ NF+K++ EP+ A
Sbjct: 346 VPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAE 405
Query: 385 -----EPCNP-------DIAEHAARHLFELEPLSSG-------------------KVHSF 413
EP NP +I A R + ++E + K + F
Sbjct: 406 HRLASEPGNPAHYVILSNIYALAGR-MDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLF 464
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK-------------RIPACG-HSEKLALAF 459
GD SH+ ++I L +L + ++ GY+ R A G HSEKLA+AF
Sbjct: 465 SMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAF 524
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+ TS G+ +R++KNLRMC DCHS KY+S REII+ D RFHHF +G+CSC
Sbjct: 525 GLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVIS----NREIIVRDKLRFHHFKNGSCSC 580
Query: 520 GDYW 523
DYW
Sbjct: 581 LDYW 584
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 26/142 (18%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+L F++RM+ +++ P+ + + V+ +CA + + G+ IHG+VL
Sbjct: 95 SLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVL---------------- 138
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+ G G+ +V +L+ YG+CG + + F+ M+ + ++ + M+ + G
Sbjct: 139 VNGFGSDVYVQTALMSFYGKCGVLCNAR--KVFDKMR-----DRSVVTWNSMISGYEQNG 191
Query: 366 QFDDTLNF---MKKMPFEPSSA 384
+ + MK++ EP+SA
Sbjct: 192 FAKEAIRLFDRMKEIGVEPNSA 213
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 168/691 (24%), Positives = 281/691 (40%), Gaps = 208/691 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T + + + C +L G +HA + G E+ FLG +F K+
Sbjct: 53 TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+V +W++M+ + G+ +E LF+L+ +G + + + D R G+
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIK--------------------------------- 142
++ + FE + V P++ M++K
Sbjct: 173 SIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQ 232
Query: 143 -CGR-----MEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVN 187
CGR +M F+ F+ +S+L+ GK++H H +K + D V
Sbjct: 233 TCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF-VG 291
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D YAK R L+ A F ++ + + SW +++GYA Q E A+
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYA------------QTDQAEKAV 339
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
++F +M + ++PN +L+ L+ C+ + + G+++H ++ VG AL+ +
Sbjct: 340 KYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLY 399
Query: 307 -------------QGLGTGSFV-WNSLIDMYGRCGAIQK--------------------- 331
+GL + V WN++I Y + G +K
Sbjct: 400 GKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFI 459
Query: 332 ------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG + F+ M K Y + P++E Y CMVD+L RAG+F++ F+++M
Sbjct: 460 GVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNL 519
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPL------------------------ 405
P S C N D E AA+ LFE+EP+
Sbjct: 520 TPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNI 579
Query: 406 -------------------SSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
G+VH F++ D SH + +I KL +L + IGY+ +
Sbjct: 580 RALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKT 639
Query: 447 PAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
HSE+LAL+F L+ST+ P+R+ KNLR+C DCH K +S
Sbjct: 640 EVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLISDI 699
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+EI++ D RFHHF G CSC D W
Sbjct: 700 TN----QEIVVRDIRRFHHFKRGTCSCQDRW 726
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 116/281 (41%), Gaps = 74/281 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F MPE+N SW +++ Y LG ++++ LF + K C E K + +
Sbjct: 7 LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKM------KEC-ETKFSK-------F 52
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+S +G A N L+ GK +H L+
Sbjct: 53 TLSTVLKGCA-----------------------------NTGSLREGKVLHALALRSG-C 82
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E D + SL+D Y+KC + A F+KI+ +V+W+AM ITG Q
Sbjct: 83 EIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM------------ITGLDQQ 130
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ A E F M + +PN +LS +++ + + G+ IHG + ++
Sbjct: 131 GHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY--------- 181
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G + + V N LI MY + ++ +G + FE M
Sbjct: 182 -------GFESDNLVSNPLIMMYMKSRCVE--DGNKVFEAM 213
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 28/130 (21%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
+++A F + +K+ VSWNA+L GYA Q GDG+ L+ F +M + + +
Sbjct: 1 MELAERLFFGMPEKNGVSWNALLNGYA------------QLGDGKKVLKLFCKMKECETK 48
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
+ +LS VL CA + GK +H LR G F+ SL
Sbjct: 49 FSKFTLSTVLKGCANTGSLREGKVLHALALR----------------SGCEIDEFLGCSL 92
Query: 320 IDMYGRCGAI 329
+DMY +CG +
Sbjct: 93 VDMYSKCGTV 102
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 181/689 (26%), Positives = 278/689 (40%), Gaps = 206/689 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+A + L+LG +VHA + G F+ +F M
Sbjct: 203 TFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWM 262
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKDHRVGK 115
R++ SW ++M + E + LF+ V K C+ LK + +
Sbjct: 263 ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALAR 322
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------SGEFEE 155
++ ++ F V + D + KCG + A SG +
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382
Query: 156 KD--------------------FSNLSLLKHGKEIHPHHLKKDDLESDLL----VNNSLM 191
D F+ ++LK I P + ++++ V +L+
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALL 442
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
Y+K + A F I+QK +V+W+AML+ +A Q GD E A F+
Sbjct: 443 ASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHA------------QAGDCEGATYLFN 490
Query: 252 RMIQTDMQPNTISLSGVLAACA-QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-- 308
+M ++PN ++S V+ ACA G G++ H +++ + V AL+S+
Sbjct: 491 KMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550
Query: 309 --LGTGSFV-----------WNSLIDMYGRCG---------------AIQKN-------- 332
+ + V WNS+I Y + G IQ +
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610
Query: 333 ----------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
EG +YF+ M +++ + P ME Y CMVDL +RAG+ D+T++ ++ MPF P+
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPF-PA 669
Query: 383 SA-------EPC----NPDIAEHAARHLFELEPLSSG----------------------- 408
A C N ++ + +A L LEP S
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRK 729
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY------ 442
KVHSFIA D SH + +I +KL + + +K+ GY
Sbjct: 730 LMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSF 789
Query: 443 --------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSE+LALAFGLI+T PG+PL+++KNLR+CGDCH K VS E
Sbjct: 790 VLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIE- 848
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
+REIIM D RFHHF GACSCGD+W
Sbjct: 849 ---DREIIMRDCSRFHHFNGGACSCGDFW 874
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 142/361 (39%), Gaps = 93/361 (25%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-------------------LCAFLGMF 62
+ T + + + C + + LG Q+H + CG + +C + +F
Sbjct: 99 SATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVF 158
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHR 112
E MP++NV +WTS++ + E++ LF+ + EG++ A +
Sbjct: 159 EGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALD 218
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHGKE 169
+G+ V+ + + V +++M+ KCG +E A F E +D + + L G +
Sbjct: 219 LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQ 278
Query: 170 IHPHHLK-----------------------------------KDDLESDLL--------- 185
++ L+ L S +L
Sbjct: 279 LNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGN 338
Query: 186 VNNSLMDFYAKCRYLKVAHCKFS-KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V +L D Y+KC L A FS +++VSW A+ I+G Q GD
Sbjct: 339 VMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI------------ISGCIQNGDIP 386
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ FSRM + + PN + S +L A + L +IH V++ + Q VG AL+
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALL 442
Query: 305 S 305
+
Sbjct: 443 A 443
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H +K ++ SL+D Y KC + F + +K++V+W ++L G A
Sbjct: 118 GEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E+ + F RM + PN + + VL+A A LG+ +H
Sbjct: 178 HAQMHSEV------------MALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHA 225
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
++ G + FV NSL++MY +CG ++
Sbjct: 226 QSVKF----------------GCRSSVFVCNSLMNMYAKCGLVE 253
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 173/645 (26%), Positives = 261/645 (40%), Gaps = 204/645 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD TY + + C L E+G +VHA ++V G+E ++G
Sbjct: 122 PDN--FTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAAR 179
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++M R++ SW +MM + + G + R +V+
Sbjct: 180 VVFDRMLVRDLTSWNTMMSGF----------------VKNG---------EARGAFEVFG 214
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
M F G+ + +L + CG ++ LK GKEIH + ++
Sbjct: 215 DMRRDGFVGD---RTTLLALLSACG---------------DVMDLKVGKEIHGYVVRNG- 255
Query: 180 LESDLLVN----NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
ES + N NS++D Y C + A F ++ K +VSWN++++GY
Sbjct: 256 -ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYE--------- 305
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
+ GD ALE F RM+ P+ +++ VLAAC Q+ +LG + YV++ +
Sbjct: 306 ---KCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVV 362
Query: 296 STGVGIALISI------------------------------------------------- 306
+ VG ALI +
Sbjct: 363 NVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEML 422
Query: 307 -QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+G+ ++ +++ G + +EG F M ++Y++EP Y C+VDLL RAG
Sbjct: 423 GKGVTPDEGIFTAVLSACSHSGLV--DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAG 480
Query: 366 QFDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEP--------LSS 407
D+ ++ M +P+ C N +A +A+ LFEL P LS+
Sbjct: 481 YLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSN 540
Query: 408 -----------------------------------GKVHSFIAGDTSHSLVHKISEKLMR 432
VH F GDTSH I KL
Sbjct: 541 IYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKD 600
Query: 433 LYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L ++KK GY +K HSE+LALAF LI+T PG+ +R+ KNLR+
Sbjct: 601 LNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRV 660
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCH+ K +SK REIIM D RFHHF DG CSCG YW
Sbjct: 661 CGDCHTVIKMISKLTN----REIIMRDICRFHHFRDGLCSCGGYW 701
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 123/309 (39%), Gaps = 62/309 (20%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ Q +L +Q+HAH+ G RN + T + Y V G+
Sbjct: 28 LLQSLTNSKSLTQALQLHAHVTTGGT------------LRRNTYLATKLAACYAVCGHMP 75
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
++F D V K+ + + I+ G AC P +F+ +
Sbjct: 76 YAQHIF----------------DQIVLKNSFLWNSMIR--GYACNNSPSRALFLYLKMLH 117
Query: 148 MA------SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ F K +L L + G+++H + LE D+ V NS++ Y K ++
Sbjct: 118 FGQKPDNFTYPFVLKACGDLLLREMGRKVHAL-VVVGGLEEDVYVGNSILSMYFKFGDVE 176
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A F ++ + L SWN M+ +GF + G+ A E F M + +
Sbjct: 177 AARVVFDRMLVRDLTSWNTMM------------SGFVKNGEARGAFEVFGDMRRDGFVGD 224
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
+L +L+AC V K+GKEIHGYV+R+ G F+ NS+ID
Sbjct: 225 RTTLLALLSACGDVMDLKVGKEIHGYVVRN-------------GESGRVCNGFLMNSIID 271
Query: 322 MYGRCGAIQ 330
MY C ++
Sbjct: 272 MYCNCESVS 280
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 170/648 (26%), Positives = 258/648 (39%), Gaps = 213/648 (32%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
PD+ T+T L C +L LG Q+H+ +I G+ F+G
Sbjct: 245 TPDKFTLTSLL--SACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENS 302
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSEL 108
+F M NV SWT+++ Y +E + LF ++ V KAC+ L
Sbjct: 303 RKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASL 362
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD-------- 157
D +GK ++ I + CV +++M+ + G ME A F EK+
Sbjct: 363 PDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAA 422
Query: 158 --------------------------FSNLSLLK---------HGKEIHPHHLKKDDLES 182
F+ LL G++IH + K +
Sbjct: 423 DANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHAL-IVKSGFGT 481
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L +NN+L+ Y+KC + A F+ + +++++W ++++G+A GF +
Sbjct: 482 NLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATK--------- 532
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
ALE F M++ ++PN ++ VL+AC+ V
Sbjct: 533 ---ALELFYEMLEIGVKPNEVTYIAVLSACSHV--------------------------- 562
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
LID E W++F M +++ P ME Y CMVDLL
Sbjct: 563 ---------------GLID-----------EAWKHFNSMHYNHSISPRMEHYACMVDLLG 596
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEP-------- 404
R+G + + F+ MPF+ + C N + EHAA+ + E EP
Sbjct: 597 RSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYIL 656
Query: 405 -----LSSGK------------------------------VHSFIAGDTSHSLVHKISEK 429
S G+ VH F GDTSH KI ++
Sbjct: 657 LSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDE 716
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L +IK +GY+ K HSEK+A+A+ LIST P+RV KN
Sbjct: 717 LDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKN 776
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH+ KY+S REI++ D RFHH DG CSC DYW
Sbjct: 777 LRVCGDCHTAIKYISIVTG----REIVVRDANRFHHIKDGKCSCNDYW 820
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 62/331 (18%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN 69
+ +DLT + +L+ + C + NLELG +H LI G+ L + L
Sbjct: 28 ISRLDLTTTSP-LIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVL---------- 76
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
S++ +Y+ G +E +++F + H+ + +IS F N
Sbjct: 77 ---LNSLITLYSKCGDWENALSIF------------RNMGHHKRDLVSWSAIISC-FANN 120
Query: 130 ACVKRPVLDMF--IKCGRMEMASGEF----EEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ R +L ++C R + E+ + SN G I LK +S
Sbjct: 121 SMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSH 180
Query: 184 LLVNNSLMDFYAKCRY-LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V +L+D + K ++ A F K++ K+LV+W M IT ++Q G
Sbjct: 181 VCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLM------------ITRYSQLGL 228
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A++ F R++ ++ P+ +L+ +L+AC +++ F LGK++H +V+R
Sbjct: 229 LDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIR------------ 276
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
GL + FV +L+DMY + A++ +
Sbjct: 277 ----SGLASDVFVGCTLVDMYAKSAAVENSR 303
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 154/538 (28%), Positives = 223/538 (41%), Gaps = 165/538 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP RNV SW +M+ Y G +E +F ++ KD +
Sbjct: 377 LFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ----------------KDAVSW 420
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF--------SNLSLLKHGKEIHP 172
+ L +F + GR GE+ + ++++ L+ G ++H
Sbjct: 421 AAMLAAYSQIGFSEETLQLFKEMGR----CGEWVNRSAFACVLSTCADIAALECGMQLH- 475
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
L K V N+L+ Y KC ++ AH F +++++ +VSWN M+AGYA GF
Sbjct: 476 SRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGF-- 533
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
G+ ALE F M +T +P+ I+L GVLAAC+
Sbjct: 534 ----------GKEALEVFDTMRKTSTKPDDITLVGVLAACSH------------------ 565
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G ++K G YF M +++ + E
Sbjct: 566 ---------------------------------SGLVEK--GISYFYSMHRDFGVATKPE 590
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFEL 402
Y CM+DLL RAG+ D+ +N MK MPFEP S N ++ +AA +FEL
Sbjct: 591 HYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFEL 650
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
EP ++G KVH+F GD+
Sbjct: 651 EPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSV 710
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTS 465
H I L L +KK GY+ HSEKLA+A+G++
Sbjct: 711 HPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIP 770
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG P+RVIKNLR+C DCH+ K +S E R II+ D+ RFHHF DG+CSCGDYW
Sbjct: 771 PGRPIRVIKNLRVCRDCHTAFKCISAIEG----RLIILRDSNRFHHFRDGSCSCGDYW 824
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 63/289 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH------RVG 114
MF KMP+R+V SW +M+ Y G E LF + V+ + + +
Sbjct: 284 MFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEA 343
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
K V+D M + NA ++ +++ ME A F+ N++
Sbjct: 344 KRVFDAMP----DKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW---------- 389
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
N+++ YA+ L A F + QK VSW AMLA Y+ GF EE
Sbjct: 390 -------------NTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEET 436
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
L+ F M + N + + VL+ CA + + G ++H +++
Sbjct: 437 ------------LQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIK---- 480
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
G G G FV N+L+ MY +CG+++ E FE M++
Sbjct: 481 ------------AGYGVGCFVGNALLAMYFKCGSME--EAHSAFEEMEE 515
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 138/359 (38%), Gaps = 86/359 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF------------YLLIDEGVYKACSEL 108
+F MP R+ ++ +M+ Y G + ++ F LL GV + +++
Sbjct: 129 LFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADV 188
Query: 109 K---DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSN-- 160
+ D KD Y + I N G + +A F+ EKD +
Sbjct: 189 RALFDEMPVKDSVSYNVMISSHANH-------------GLVSLARHYFDLAPEKDAVSWN 235
Query: 161 ---LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+ +++G+ L E D + N+LM Y + ++ A F+K+ Q+ +VS
Sbjct: 236 GMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS 295
Query: 218 WNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDM 258
WN M++GYA G E ++G+ Q G E A F M
Sbjct: 296 WNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK-- 353
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
N +S + ++AA Q + + KE+ + ++ WN+
Sbjct: 354 --NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA--------------------SWNT 391
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
++ Y + G + +E F MM ++ + + M+ ++ G ++TL K+M
Sbjct: 392 MLTGYAQAGML--DEARAIFGMMPQKDAV-----SWAAMLAAYSQIGFSEETLQLFKEM 443
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+A + C + LE G+Q+H+ LI G + F+G FE+M
Sbjct: 454 AFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEM 513
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
ER+V SW +M+ Y G+ +E + +F + GV ACS G
Sbjct: 514 EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGI 573
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
+ D+ ++ K E C ++D+ + GR++ A ++ F S +
Sbjct: 574 SYFYSMHRDFGVATKPEHYTC----MIDLLGRAGRLDEAVNLMKDMPFEPDSTM 623
>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
Length = 627
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 148/472 (31%), Positives = 215/472 (45%), Gaps = 133/472 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H +K + D+ V +SL+D YAKC +K A F ++ +++VSW+ M+ GY
Sbjct: 174 GKSVHCLVIKTG-YDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGY- 231
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
TQ G+ E A+ F + + N +LS V+ C +LGK+IHG
Sbjct: 232 -----------TQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHG 280
Query: 287 YVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLI----------- 320
+ LS VG +LIS+ GL G++ +WN+++
Sbjct: 281 LCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKE 340
Query: 321 --DMYGRC--GAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMV 358
D++ + ++ N EG +YF +MKK Y +EP + Y MV
Sbjct: 341 AFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKK-YEIEPGTQHYASMV 399
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLL RAG+ + L+ +K MP EP+ + C N D+A AA +FEL +SSG
Sbjct: 400 DLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKVFELGAVSSG 459
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
+VH F AGD H + +
Sbjct: 460 LHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKE 519
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I +KL L E+++ GY+ K HSE+LA+AFGLIS G P+R
Sbjct: 520 IYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLISIPLGRPIR 579
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+CGDCH+ K++SK R II+ DN RFH F DG CSC DYW
Sbjct: 580 IMKNLRVCGDCHNAIKFISKLSG----RVIIVRDNNRFHRFEDGKCSCADYW 627
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 30/170 (17%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
SLLK G++IH H + K L+ LV + L++FY+K + ++ F + ++K +W+++
Sbjct: 69 SLLK-GQQIHAH-IIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSV 126
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+ F Q + A+++F RMI ++ P+ ACA + +G
Sbjct: 127 ------------ISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVG 174
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
K +H V++ G FV +SL+DMY +CG I++
Sbjct: 175 KSVHCLVIK----------------TGYDVDVFVGSSLVDMYAKCGDIKE 208
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 28/160 (17%)
Query: 32 CPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSW 73
C L ++G VH +I G ++ F+G +F++MP RNV SW
Sbjct: 165 CAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSW 224
Query: 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMIS 123
+ M+ Y LG +EE + LF + EG V + C +GK ++
Sbjct: 225 SGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFK 284
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
++ + V ++ ++ KCG +E A F+E NL +
Sbjct: 285 TSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGM 324
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 180/705 (25%), Positives = 272/705 (38%), Gaps = 206/705 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---------- 58
+ M L+ +VT A + C + +L G Q+H++L+ G+ L
Sbjct: 231 IFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYV 290
Query: 59 --------LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
L +F+ NV W M+ Y + + ++FY ++ GV
Sbjct: 291 KSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPC 350
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKD 157
+ C+ + +G+ ++ I F+ + V ++DM+ K G ++ A EEKD
Sbjct: 351 MLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKD 410
Query: 158 FSNLSLLKHG--------------KEIHPHHLKKDDL----------------------- 180
+ + + G KE+ + D++
Sbjct: 411 VVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHA 470
Query: 181 -------ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+D+ + N L+ YA+C K A F I+ K ++WN +++G+A G EE
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEE 530
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
AL+ F +M Q + N + ++A A + K GK+IH V++
Sbjct: 531 ------------ALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGY 578
Query: 294 QLSTGVGIALISIQG---------------LGTGSFVWNSLI---DMYGR---------- 325
T + ALIS+ G WN++I +GR
Sbjct: 579 TSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQ 638
Query: 326 -------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G + EG YF+ M E+ + P + Y C+VD+L RAG
Sbjct: 639 MKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAG 698
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------ 409
Q D F+++MP S C N +I E AA+HL ELEP S
Sbjct: 699 QLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSN 758
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
VH+F GD H L +I L
Sbjct: 759 AYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSH 818
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L + KIGY K A HSEKLA+AFGL+S PLRVIKNLR+
Sbjct: 819 LNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRV 878
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K+ S REI++ D YRFHHF +G+CSCGDYW
Sbjct: 879 CNDCHTWMKFTSGVMG----REIVLRDVYRFHHFNNGSCSCGDYW 919
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 144/378 (38%), Gaps = 107/378 (28%)
Query: 43 QVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMYNVLG 84
++HA I+CG+ +G +FE++ R+ SW +++ Y G
Sbjct: 63 EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122
Query: 85 YYEEIVNLFYLLIDEGVY----------KACSELKDHRVGK----DVYDY-MISIKFEGN 129
EE V L+ + GV AC++ + ++G+ VY S F GN
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182
Query: 130 ACVK------------RPVLDMF--------------IKCGRMEMASGEFEEKDFSNLSL 163
A + R DM +CG + A G F+E S LS
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242
Query: 164 -----------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
L+ GK++H + LK + D ++ SL+D Y K ++ A
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAG-MSLDYIMEGSLLDLYVKSGDIEEALQI 301
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F + ++V WN ML Y Q D + + F RM+ ++PN +
Sbjct: 302 FDSGDRTNVVLWNLMLVAYG------------QIDDLAKSFDIFYRMLAAGVRPNKFTYP 349
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+L C LG++IH +++ G + +V LIDMY +
Sbjct: 350 CMLRTCTHTGEIGLGEQIHSLTIKN----------------GFQSDMYVSGVLIDMYSKY 393
Query: 327 GAIQKNEGWRYFEMMKKE 344
G + K + R +M++++
Sbjct: 394 GWLDKAQ--RILDMIEEK 409
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 162/633 (25%), Positives = 258/633 (40%), Gaps = 193/633 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKM 65
T A + C ++ L++G V A+ + G+ ++ A +F+
Sbjct: 122 TAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAA 181
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
E V W +++ Y G + E+V +F +++ GV +D +
Sbjct: 182 EESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGV---------------AFDEVT--- 223
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
++ + CGR+ A K GK + H+ ++ L +
Sbjct: 224 ----------LVSVVTACGRIGDA---------------KLGKWV-AGHVDEEGLARNPK 257
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +LMD YAKC + A F ++ + +V+W+AM++GY TQ
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGY------------TQADQCRE 305
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
AL FS M ++PN +++ VL+ACA + + GK +H YV R + L+T +G AL+
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVD 365
Query: 305 ----------SIQGLGT----GSFVWNSLIDMYGRCGAIQK------------------- 331
+++ + S+ W +LI G ++
Sbjct: 366 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVT 425
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG R+F+ M ++Y ++P +E Y CMVDLL RAG D+ F++ M
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTM 485
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------------ 409
P EP++ C N I E A + + L P SG
Sbjct: 486 PIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAA 545
Query: 410 -------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
V F A D+ H + +I +K+ + IK GY+
Sbjct: 546 MVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVP 605
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K + HSEKLA+AFGL+ PG+ +R+ KNLR+C DCHS TK +S
Sbjct: 606 NTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLIS 665
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +REI++ D FHHF DG CSC DYW
Sbjct: 666 KV----YDREIVVRDRNIFHHFKDGTCSCNDYW 694
>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
Length = 681
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 183/694 (26%), Positives = 268/694 (38%), Gaps = 209/694 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
T A + Q K L G Q+HA LI G C FL +F+
Sbjct: 5 TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLF----------YLLIDEGVYKACSELKDHRV 113
MP+RN+ SWT+M+ + + E + F +AC+ L +
Sbjct: 65 TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMAS--------------- 150
GK ++ + V + DM+ KCG M EM
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184
Query: 151 -GEFEEKDFS------------------------NLSLLKHGKEIHPHHLKKDDLESDLL 185
GEFEE + L K G+ +H +K ESD+
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLG-FESDIF 243
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+L D Y+K ++ A F + +++VS+ ++ GY E+I E
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE---TEQI---------E 291
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
L F + + ++PN + S ++ ACA + G ++H V++ + V L+
Sbjct: 292 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILV 351
Query: 305 SIQG--------------LGTGS-FVWNSLIDMYGRCG---------------AIQKN-- 332
+ G +G + WNSL+ ++G+ G ++ N
Sbjct: 352 DMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAI 411
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG YF M K Y + P E Y C++DLL RAG+ + F+ +
Sbjct: 412 TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 471
Query: 377 MPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG------------------ 408
MPFEP++ C + ++ + AA L +LEP +SG
Sbjct: 472 MPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDV 531
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY- 442
K H F A D SH I EKL L +IK GY
Sbjct: 532 RSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYV 591
Query: 443 -------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
MK HSE++A+AF LIS G P+ V KNLR+C DCHS K++
Sbjct: 592 PXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFI 651
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK R+II+ DN RFHHF DG+CSCGDYW
Sbjct: 652 SKVTG----RKIIVRDNSRFHHFTDGSCSCGDYW 681
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 156/553 (28%), Positives = 226/553 (40%), Gaps = 164/553 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL---------------IDEGVYKAC 105
+F+ MPERN SW +M+ Y +E LF ++ G+ +
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 336
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------- 158
+ D KD + + L +FI+ GR GE+ +
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR----CGEWVNRSAFACVLST 392
Query: 159 -SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
++++ L+ G ++H L + V N+L+ Y KC ++ A F +++++ +VS
Sbjct: 393 CADIAALECGMQLH-GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVS 451
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN M+AGYA GF G+ ALE F M T +P+ I+L GVLAAC+
Sbjct: 452 WNTMIAGYARHGF------------GKEALEIFDMMRTTSTKPDDITLVGVLAACSH--- 496
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G ++K G Y
Sbjct: 497 ------------------------------------------------SGLVEK--GISY 506
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC---------- 387
F M ++ + E Y CM+DLL RAG+ + + MK MPFEP S
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566
Query: 388 NPDIAEHAARHLFELEPLSSG--------------------------------------- 408
NP++ AA +FELEP ++G
Sbjct: 567 NPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
KVH+F AGD H KI L L +KK GY+
Sbjct: 627 EVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKY 686
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+G+++ PG P+RVIKNLR+CGDCH+ KY+S E R I++ D+ RFH
Sbjct: 687 HSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG----RLILLRDSNRFH 742
Query: 511 HFVDGACSCGDYW 523
HF G+CSCGDYW
Sbjct: 743 HFRGGSCSCGDYW 755
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 139/380 (36%), Gaps = 108/380 (28%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKM-------------------- 65
A +F+ P+ +N +HA + L G+F++M
Sbjct: 89 ASLFRAIPRPDNYSYNTLLHA--LAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL 146
Query: 66 -----------PERNVFSWTSMMGMYNVLGYYEEIVNLFYL---------------LIDE 99
PE++ SW M+ Y G EE LF +
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQW 206
Query: 100 GVYKACSELKDHRVGKDVYDYMISIK---FEGNACVKR------PVLDMFIKCGRMEMAS 150
G EL D G+DV + I + G+ R PV D+F + S
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTA---VVS 263
Query: 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209
G ++ +L+ + + D + E + + N+++ Y + R + A F+
Sbjct: 264 G------YAQNGMLEEARRVF------DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311
Query: 210 IKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFF 250
+ +++ SWN ML GYA G EE + ++Q G E L+ F
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
M + N + + VL+ CA + + G ++HG ++R G G
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR----------------AGYG 415
Query: 311 TGSFVWNSLIDMYGRCGAIQ 330
G FV N+L+ MY +CG ++
Sbjct: 416 VGCFVGNALLAMYFKCGNME 435
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+A + C + LE G+Q+H LI G + F+G FE+M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
ER+V SW +M+ Y G+ +E + +F ++ GV ACS G
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ D+ ++ K E C ++D+ + GR+ A
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTC----MIDLLGRAGRLAEA 539
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 47/229 (20%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------- 233
D + N ++ +A + +A F +K VSWN MLA Y G EE
Sbjct: 130 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189
Query: 234 ----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV-----------LAAC 272
++G+ Q+G A E F RM D+ I +SG L
Sbjct: 190 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 249
Query: 273 AQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
A V+ F + GY ++ + V A+ + WN+++ Y IQ+
Sbjct: 250 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAY-----IQR 299
Query: 332 NEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKMP 378
R + K+ +NM P + + M+ A+AG ++ MP
Sbjct: 300 ----RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 169/604 (27%), Positives = 244/604 (40%), Gaps = 161/604 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ER+ SWT+M+ Y + G A + D K V +
Sbjct: 216 LFDEMTERDELSWTTMIAGY----------------VRNGELDAARQFLDGMTEKLVVAW 259
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLK 176
I + L+MF K + + EF +N HGK++H + L+
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319
Query: 177 ---KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---- 229
+ L+ L VNN+L Y KC + A F+++ K LVSWNA+L+GY G
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379
Query: 230 ---FREE------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
F EE I+G Q G GE +L+ F+RM +P + +G + ACA
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-LGT--------------GSFVWNSL 319
+ G+++H ++R S G ALI++ G S WN++
Sbjct: 440 LAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAM 499
Query: 320 IDMYGRCG---------------------------------AIQKNEGWRYFEMMKKEYN 346
I G+ G A EG RYF+ M Y
Sbjct: 500 IAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYG 559
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P + Y M+DLL RAG+F + + ++ MP EP C N D+ AA
Sbjct: 560 ICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAA 619
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
LFEL P G KVH F
Sbjct: 620 ERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVF 679
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
+ D H V + L L +++K+GY+ K HSEKLA+ F
Sbjct: 680 LVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGF 739
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+ G+ +RV KNLR+CGDCH+ K++SK EREI++ D RFHHF +G CSC
Sbjct: 740 GLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVV----EREIVVRDGKRFHHFKNGECSC 795
Query: 520 GDYW 523
G+YW
Sbjct: 796 GNYW 799
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 22/141 (15%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N L+D Y K L AH F +I+Q +V+ ++A ++ G
Sbjct: 54 NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRD 113
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLGKEIH 285
+ ITG++ DG A+E F +++ +P+ + + VL A A V+ K ++IH
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIH 173
Query: 286 GYVLRHHIQLSTGVGIALISI 306
V++ T V AL+S+
Sbjct: 174 CAVVKSGSGFVTSVLNALLSV 194
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 156/553 (28%), Positives = 226/553 (40%), Gaps = 164/553 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL---------------IDEGVYKAC 105
+F+ MPERN SW +M+ Y +E LF ++ G+ +
Sbjct: 152 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 211
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------- 158
+ D KD + + L +FI+ GR GE+ +
Sbjct: 212 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR----CGEWVNRSAFACVLST 267
Query: 159 -SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
++++ L+ G ++H L + V N+L+ Y KC ++ A F +++++ +VS
Sbjct: 268 CADIAALECGMQLHGR-LIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVS 326
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN M+AGYA GF G+ ALE F M T +P+ I+L GVLAAC+
Sbjct: 327 WNTMIAGYARHGF------------GKEALEIFDMMRTTSTKPDDITLVGVLAACSH--- 371
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G ++K G Y
Sbjct: 372 ------------------------------------------------SGLVEK--GISY 381
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC---------- 387
F M ++ + E Y CM+DLL RAG+ + + MK MPFEP S
Sbjct: 382 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 441
Query: 388 NPDIAEHAARHLFELEPLSSG--------------------------------------- 408
NP++ AA +FELEP ++G
Sbjct: 442 NPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWI 501
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
KVH+F AGD H KI L L +KK GY+
Sbjct: 502 EVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKY 561
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+G+++ PG P+RVIKNLR+CGDCH+ KY+S E R I++ D+ RFH
Sbjct: 562 HSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG----RLILLRDSNRFH 617
Query: 511 HFVDGACSCGDYW 523
HF G+CSCGDYW
Sbjct: 618 HFRGGSCSCGDYW 630
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+A + C + LE G+Q+H LI G + F+G FE+M
Sbjct: 260 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 319
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
ER+V SW +M+ Y G+ +E + +F ++ GV ACS G
Sbjct: 320 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 379
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ D+ ++ K E C ++D+ + GR+ A
Sbjct: 380 SYFYSMHHDFGVTAKPEHYTC----MIDLLGRAGRLAEA 414
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 47/229 (20%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------- 233
D + N ++ +A + +A F +K VSWN MLA Y G EE
Sbjct: 5 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64
Query: 234 ----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV-----------LAAC 272
++G+ Q+G A E F RM D+ I +SG L
Sbjct: 65 EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 124
Query: 273 AQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
A V+ F + GY ++ + V A+ + WN+++ Y IQ+
Sbjct: 125 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAY-----IQR 174
Query: 332 NEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKMP 378
R + K+ +NM P + + M+ A+AG ++ MP
Sbjct: 175 ----RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 219
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 46/177 (25%)
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
E +A +L +++ GR+E A G F + E D++
Sbjct: 34 EKDAVSWNGMLAAYVRNGRVEEARGLFNSR-----------------------TEWDVIS 70
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----------------- 229
N+LM Y + + A F ++ + +VSWN M++GYA G
Sbjct: 71 WNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV 130
Query: 230 --FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+ ++G+ Q G E A F M + N +S + ++AA Q + KE+
Sbjct: 131 FTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKEL 183
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 171/654 (26%), Positives = 269/654 (41%), Gaps = 202/654 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEKM 65
T+ +F+ +L L LG +H +I + L F G +F M
Sbjct: 175 TFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNM 234
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P ++V SW +M+ + + G ++ + LF E++ KDV +I++
Sbjct: 235 PGKDVVSWNAMINAFALGGLPDKALLLF------------QEME----MKDVKPNVITMV 278
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC K+ L+ GR + +++ + L+
Sbjct: 279 SVLSACAKKIDLEF----GRWICS------------------------YIENNGFTEHLI 310
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREE----------- 233
+NN+++D Y KC + A F+K+ +K +VSW ML G+A LG + E
Sbjct: 311 LNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKW 370
Query: 234 -------ITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I+ + Q G AL F M + D +P+ ++L L A AQ+ G IH
Sbjct: 371 TAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIH 430
Query: 286 GYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MYGRCG 327
Y+ +H I L+ + +L+ + +VW+++I MYG+
Sbjct: 431 VYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGK 490
Query: 328 AIQK------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
A NEG + FE M+ Y + P ++ Y C+
Sbjct: 491 AALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCV 550
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS- 406
VD+ RAG + +F++KMP P++A C N ++AE A ++L ELEP +
Sbjct: 551 VDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNH 610
Query: 407 ------------------------------------------SGKVHSFIAGDTSHSLVH 424
+G VH F+ GD SH
Sbjct: 611 GAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQ 670
Query: 425 KISEKLMRLYSEIKKIGYMKRIPAC---------------GHSEKLALAFGLISTSPGSP 469
KI KL + + K IGY + HSEKLA+AFGLIST+ P
Sbjct: 671 KIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQP 730
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R++KN+R+CGDCH+ K VS+ +R+I++ D YRFHHF G CSC DYW
Sbjct: 731 IRIVKNIRICGDCHAFAKLVSQL----YDRDILLRDRYRFHHFRGGKCSCLDYW 780
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 84/213 (39%), Gaps = 39/213 (18%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYA--KCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K+IH H L+ D + L+ YA C L A F++I Q +L WN ++ GY
Sbjct: 89 KQIHAHMLRTSRF-CDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGY 147
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEI 284
A D + F M+ + + PN + + A +++K LG +
Sbjct: 148 A------------SSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVL 195
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
HG V++ L + F+ NSLI+ YG GA + R F M +
Sbjct: 196 HGMVIK----------------ASLSSDLFILNSLINFYGSSGA--PDLAHRVFTNMPGK 237
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + M++ A G D L ++M
Sbjct: 238 -----DVVSWNAMINAFALGGLPDKALLLFQEM 265
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 252/578 (43%), Gaps = 175/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE MPE+++ SW +++ G Y E + +
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTM---------------------------- 287
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++ G A +K D F + + + E D S GKEIH +++ L
Sbjct: 288 ---VREMGGANLKP---DSFTLSSVLPLIA---ENVDISK------GKEIHGCSIRQG-L 331
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
++++ V +SL+D YAKC + ++ F+ + ++ +SWN+++AG G +E
Sbjct: 332 DAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDE------- 384
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L+FF +M+ ++P + S S ++ ACA + LGK++HGY+ R+ + +
Sbjct: 385 -----GLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIA 439
Query: 301 IALISIQG----LGTGSFV-----------WNSLI---DMYG------------RCGAIQ 330
+L+ + + T + W ++I ++G + I+
Sbjct: 440 SSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIE 499
Query: 331 KN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
N E W+YF M ++ + P +E Y + DLL RAG+ ++ +
Sbjct: 500 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYD 559
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
F+ MP P+ + C N D+AE A + E++P ++G
Sbjct: 560 FICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARR 619
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
KV++F+AGD SH KI E + L ++K
Sbjct: 620 WKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEK 679
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ K+ C HSE+LA+ FG+I+T G+ +RV KNLR+C DCH+
Sbjct: 680 EGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTA 739
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK REI++ DN RFHHF +G CSCGDYW
Sbjct: 740 TKFISKIVG----REIVVRDNSRFHHFKNGTCSCGDYW 773
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%)
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
++ I +T +G +L F M+ + + P+ VL ACA + LG+ +HGY+
Sbjct: 75 AWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYI 134
Query: 289 LRHHIQLSTGVGIALISI 306
+R + G AL+++
Sbjct: 135 IRVGLDFDLYTGNALMNM 152
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 164/633 (25%), Positives = 262/633 (41%), Gaps = 186/633 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL--IDE----GVYKACSELKDHRVG 114
+F++MP R++ SW +M+ Y G +E + L L +D + AC+E D G
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG 266
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--------------------MASGEFE 154
++ Y I E V ++D++ + GR+ + + E
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 155 EKDFSNLSLLKHGK--EIHPHHLKKDDLES--------------------------DLLV 186
E+ +SL + + I P L L S D+ +
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+++ YAK + A F+ + ++SWN +++GYA GF E A
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE------------A 434
Query: 247 LEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+E ++ M + ++ N + VL AC+Q + G ++HG +L++ + L V +L
Sbjct: 435 IEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLAD 494
Query: 306 IQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------------- 331
+ G S WN+LI +G G +K
Sbjct: 495 MYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHIT 554
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+EG FEMM+ +Y + P+++ Y CMVD+ RAGQ + L F+K M
Sbjct: 555 FVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM 614
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
+P ++ C N D+ + A+ HLFE+EP G
Sbjct: 615 SLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVD 674
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
KV F G+ +H + ++ +L L +++K IGY+
Sbjct: 675 EIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVP 734
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSE+LA+AF LI+T + +R+ KNLR+CGDCHS TK++S
Sbjct: 735 DHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFIS 794
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ D+ RFHHF +G CSCGDYW
Sbjct: 795 KIT----EREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 43/227 (18%)
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK---- 165
DH +DVY + + I G A V I+C + M S + S+LK
Sbjct: 110 DHIQNRDVYAWNLMISGYGRAGNSSEV----IRCFSLFMLSSGLTPDYRTFPSVLKACRT 165
Query: 166 --HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
G +IH LK + D+ V SL+ Y++ + + A F ++ + + SWNAM++
Sbjct: 166 VIDGNKIHCLALKFGFMW-DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY Q G+ + AL + + D ++++ +L+AC + F G
Sbjct: 225 GYC------------QSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFNRGVT 268
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
IH Y ++H GL + FV N LID+Y G ++
Sbjct: 269 IHSYSIKH----------------GLESELFVSNKLIDLYAEFGRLR 299
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
T+ + C + L G+++H L+ G+ L F L +F ++
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
P N W +++ + G+ E+ V LF ++DEGV ACS G+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ DY I+ + C ++DM+ + G++E A
Sbjct: 573 WCFEMMQTDYGITPSLKHYGC----MVDMYGRAGQLETA 607
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 182/654 (27%), Positives = 284/654 (43%), Gaps = 192/654 (29%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---- 60
N+T L+ + L P+ TY L+ C N+L +VH HL+ G + FL
Sbjct: 54 NLTQALELLSL-EPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLI 112
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F+K R ++ + ++ ++ G+ EE++N++ + G+
Sbjct: 113 NMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGI----- 167
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
D + Y +K ACV AS F +SLL
Sbjct: 168 -------PSDRFTYTYVLK----ACV----------------ASECF-------VSLLNK 193
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+EIH H L+ + + + +L+D YAK + A C F+++ K++VSW+AM+A YA
Sbjct: 194 GREIHAHILRHG-YDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYA 252
Query: 227 LGGFREEITGFTQYGDGETALEFFSR-MIQT-DMQPNTISLSGVLAACAQVKGFKLGKEI 284
+ G ALE F M++T D+ PN++++ VL ACA + + G+ I
Sbjct: 253 ------------KNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLI 300
Query: 285 HGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLIDMYGRCGAI 329
HGY+LR + V AL+++ LG F WNSLI YG G
Sbjct: 301 HGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFG 360
Query: 330 QK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
+K +EG F M + + P++E Y C
Sbjct: 361 KKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYAC 420
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLS 406
MVDLL RA + ++ ++ M EP S CN ++AE A+ LF+LEP +
Sbjct: 421 MVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTN 480
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
+G K++SF++ D + +
Sbjct: 481 AGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRM 540
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSP 469
++ L++L E+K+ GY+ + GHSEKLA+AFGLI++S G
Sbjct: 541 EQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEV 600
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+ K+LR+C DCHS TK++SK +EI++ D RFHHF DG CSCGDYW
Sbjct: 601 IRITKSLRLCEDCHSFTKFISKFAN----KEILVRDVNRFHHFRDGVCSCGDYW 650
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 156/553 (28%), Positives = 226/553 (40%), Gaps = 164/553 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL---------------IDEGVYKAC 105
+F+ MPERN SW +M+ Y +E LF ++ G+ +
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 336
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------- 158
+ D KD + + L +FI+ GR GE+ +
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGR----CGEWVNRSAFACVLST 392
Query: 159 -SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
++++ L+ G ++H L + V N+L+ Y KC ++ A F +++++ +VS
Sbjct: 393 CADIAALECGMQLH-GRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVS 451
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN M+AGYA GF G+ ALE F M T +P+ I+L GVLAAC+
Sbjct: 452 WNTMIAGYARHGF------------GKEALEIFDMMRTTSTKPDDITLVGVLAACSH--- 496
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G ++K G Y
Sbjct: 497 ------------------------------------------------SGLVEK--GISY 506
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC---------- 387
F M ++ + E Y CM+DLL RAG+ + + MK MPFEP S
Sbjct: 507 FYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHR 566
Query: 388 NPDIAEHAARHLFELEPLSSG--------------------------------------- 408
NP++ AA +FELEP ++G
Sbjct: 567 NPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWI 626
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
KVH+F AGD H KI L L +KK GY+
Sbjct: 627 EVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKY 686
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+G+++ PG P+RVIKNLR+CGDCH+ KY+S E R I++ D+ RFH
Sbjct: 687 HSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEG----RLILLRDSNRFH 742
Query: 511 HFVDGACSCGDYW 523
HF G+CSCGDYW
Sbjct: 743 HFRGGSCSCGDYW 755
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 82/380 (21%), Positives = 139/380 (36%), Gaps = 108/380 (28%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKM-------------------- 65
A +F+ P+ +N +HA + L G+F++M
Sbjct: 89 ASLFRAIPRPDNYSYNTLLHA--LAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGL 146
Query: 66 -----------PERNVFSWTSMMGMYNVLGYYEEIVNLFYL---------------LIDE 99
PE++ SW M+ Y G EE LF +
Sbjct: 147 VSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQW 206
Query: 100 GVYKACSELKDHRVGKDVYDYMISIK---FEGNACVKR------PVLDMFIKCGRMEMAS 150
G EL D G+DV + I + G+ R PV D+F + S
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTA---VVS 263
Query: 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209
G ++ +L+ + + D + E + + N+++ Y + R + A F+
Sbjct: 264 G------YAQNGMLEEARRVF------DAMPERNAVSWNAMVAAYIQRRMMDEAKELFNM 311
Query: 210 IKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFF 250
+ +++ SWN ML GYA G EE + ++Q G E L+ F
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLF 371
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
M + N + + VL+ CA + + G ++HG ++R G G
Sbjct: 372 IEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIR----------------AGYG 415
Query: 311 TGSFVWNSLIDMYGRCGAIQ 330
G FV N+L+ MY +CG ++
Sbjct: 416 VGCFVGNALLAMYFKCGNME 435
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+A + C + LE G+Q+H LI G + F+G FE+M
Sbjct: 385 AFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEM 444
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
ER+V SW +M+ Y G+ +E + +F ++ GV ACS G
Sbjct: 445 EERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGI 504
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ D+ ++ K E C ++D+ + GR+ A
Sbjct: 505 SYFYSMHHDFGVTAKPEHYTC----MIDLLGRAGRLAEA 539
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 47/229 (20%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------- 233
D + N ++ +A + +A F +K VSWN MLA Y G EE
Sbjct: 130 DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 189
Query: 234 ----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV-----------LAAC 272
++G+ Q+G A E F RM D+ I +SG L
Sbjct: 190 EWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDA 249
Query: 273 AQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
A V+ F + GY ++ + V A+ + WN+++ Y IQ+
Sbjct: 250 APVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAY-----IQR 299
Query: 332 NEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKMP 378
R + K+ +NM P + + M+ A+AG ++ MP
Sbjct: 300 ----RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344
>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
Length = 635
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/502 (28%), Positives = 228/502 (45%), Gaps = 144/502 (28%)
Query: 147 EMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+M F F+ S LK G+++H +K + L+ D+ V ++L+D YA+C
Sbjct: 153 DMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYN-LDEDVYVGSALLDMYARC 211
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ + +A F + K+ VSWNA++AG+A + GDGET L F+ M +
Sbjct: 212 QQMDMAIRVFDWLDSKNEVSWNALIAGFA------------RKGDGETTLMKFAEMQRNG 259
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV-- 315
+ S V +A A++ + G+ +H ++++ +L+ V ++ + +GS V
Sbjct: 260 FGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYA-KSGSMVDA 318
Query: 316 --------------WNSLIDMYGRCG---------------AIQKN-------------- 332
WN+++ + + G IQ N
Sbjct: 319 RKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHG 378
Query: 333 ----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EG +YF+MMK +YN+EP ++ Y VDLL RAG + L F+ KMP EP++A
Sbjct: 379 GLVKEGKQYFDMMK-DYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGA 437
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSG------------------------------ 408
C N I ++AA H+FEL+P +G
Sbjct: 438 LLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGV 497
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
VH F+A D++H +I + + IKK GY+
Sbjct: 498 KKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKE 557
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
+ HSEK+ALAF LI+ G+ +R++KN+R+CGDCHS +YVS+ K REI
Sbjct: 558 QERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFK----REI 613
Query: 502 IMIDNYRFHHFVDGACSCGDYW 523
++ D RFHHF +G+CSCGDYW
Sbjct: 614 VVRDTNRFHHFSNGSCSCGDYW 635
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 36/208 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L + IH H L + L D + NSL+ Y KC + A F I + +VSW ++
Sbjct: 78 LAGARAIHSH-LSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLIT 136
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL M++ +P+ + + L A G +G++
Sbjct: 137 GYAQNDMPAE------------ALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H +++++ VG ++L+DMY RC Q + R F+ +
Sbjct: 185 MHALAVKYNLDEDVYVG----------------SALLDMYARCQ--QMDMAIRVFDWLDS 226
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+ + + ++ AR G + TL
Sbjct: 227 KNEV-----SWNALIAGFARKGDGETTL 249
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF-----LGM-------------FEKM 65
TY+ +F ++ LE G VHAH+I G +L AF LGM F+++
Sbjct: 266 TYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRV 325
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+R++ +W +M+ + G +E V F + G V ACS + GK
Sbjct: 326 DQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGK 385
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+D M E +D+ + G ++ A
Sbjct: 386 QYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEA 419
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 164/635 (25%), Positives = 256/635 (40%), Gaps = 188/635 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ M ER+ W +M+ ++E + +F ++ G V +EL+D
Sbjct: 163 VFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQD 222
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLKHG 167
+G + + + F +A V + ++ KCG +E A G+ + D + + + G
Sbjct: 223 LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISG 282
Query: 168 KEIHPHHLKKDDLESDLLVN---------------------------------------- 187
+ L +LLV+
Sbjct: 283 YTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSN 342
Query: 188 ----NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+L Y++ ++ A F + +K L SWNAM++GYA Q G
Sbjct: 343 SSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYA------------QNGLT 390
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E A+ F M + +++PN ++++ +L+ACAQ+ LGK +H + R + + V AL
Sbjct: 391 EKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTAL 450
Query: 304 ISI----------QGLGT-----GSFVWNSLIDMYGRCG--------------------- 327
I + Q L + + WN++I YG G
Sbjct: 451 IDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTG 510
Query: 328 ------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
A EG F M ++ EP E Y CMVDLL RAG D L+F++
Sbjct: 511 VTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIR 570
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------------- 408
KMP EP C + ++A A+ LFEL+P + G
Sbjct: 571 KMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPE 630
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
+H F +GD SH I L +L ++++ G+
Sbjct: 631 AASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGF 690
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K + HSEKLA+AFGLI++ PG+ +R+IKNLR+C DCH+ TK+
Sbjct: 691 QTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKF 750
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 751 ISKIT----ERVIVVRDANRFHHFKDGICSCGDYW 781
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 30/133 (22%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIVCG--VELCAFLG------ 60
P+ TVT I C +L L LG VH +++ V +++ A G
Sbjct: 407 PNPVTVTS--ILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQ 464
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+F MPE+N +W +M+ Y + GY E +NLF ++ V ACS
Sbjct: 465 RLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAG 524
Query: 110 DHRVGKDVYDYMI 122
R G +++ M+
Sbjct: 525 LVREGDEIFRSMV 537
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 170/647 (26%), Positives = 267/647 (41%), Gaps = 210/647 (32%)
Query: 18 PDECTVTYALIFQRCPKLNN-LELGIQVHAHLIVCGVELCAFLG---------------- 60
PD T+ + + C +L + +G+ +H+ +I G + F+
Sbjct: 99 PD--NFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDA 156
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+++PE+NV SWT+++ Y G + E + LF L++ G+
Sbjct: 157 RKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGL----------------- 199
Query: 119 DYMISIKFEGNACVKRP----VLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPH 173
RP ++ + C R+ ++ASG + +
Sbjct: 200 ---------------RPDSFTLVRILYACSRVGDLASGRWIDG----------------- 227
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
++++ ++ V SL+D YAKC ++ A F + +K +V W+A++ GYA G +E
Sbjct: 228 YMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKE 287
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
AL+ F M + +++P+ ++ GV +AC+++ +LG G +
Sbjct: 288 ------------ALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEF 335
Query: 294 QLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK------ 331
+ +G ALI GS V+N++I CG +
Sbjct: 336 LSNPVLGTALIDFYA-KCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
++G RYF M +++ P +E Y CMVDL ARA
Sbjct: 395 QMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARA 454
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----- 409
G + + ++ MP E +S C + +AEH + L ELEP +SG
Sbjct: 455 GLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLS 514
Query: 410 --------------------------------------VHSFIAGDTSHSLVHKISEKLM 431
VH F+ GDTSH L HKI EKL
Sbjct: 515 NIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLE 574
Query: 432 RLYSEIKKIGYMKRIP---------------ACGHSEKLALAFGLISTSPGSPLRVIKNL 476
L+ ++++ GY C HSEKLA+AF LIST +RV+KNL
Sbjct: 575 SLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGC-HSEKLAVAFALISTGAKDVIRVVKNL 633
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH K VSK REII+ DN RFHHF +G+CSC DYW
Sbjct: 634 RVCGDCHEAIKLVSKVTG----REIIVRDNNRFHHFTEGSCSCRDYW 676
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 167/631 (26%), Positives = 253/631 (40%), Gaps = 192/631 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + Q C +E G Q+HA + G+ L +F+++
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+RN+F W M+ Y G YE ++L+Y +++D+ + D + + +K
Sbjct: 64 KRNLFLWNVMIRGYAWNGPYELAISLYY------------QMRDYGLVPDKFTFPFVLK- 110
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
AC S LS ++ GK+IH ++ LESD+ V
Sbjct: 111 ---AC---------------------------SALSAMEEGKKIHKDVIRSG-LESDVFV 139
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D YAKC ++ A F KI ++ +V WN+MLA Y +Q G + +
Sbjct: 140 GAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATY------------SQNGQPDES 187
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L M ++P + +AA A GKE+HGY RH + + V AL+ +
Sbjct: 188 LALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDM 247
Query: 307 QGLGTGSFV---------------WNSLIDMYGRCGAIQK-------------------- 331
V WN++I Y G +
Sbjct: 248 YAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDHITFV 307
Query: 332 ------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
NEG +F M ++N+ P ++ Y CM+DLL G+ ++ + +M
Sbjct: 308 GVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRV 367
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
EP + C N ++ E A L ELEP G
Sbjct: 368 EPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARL 427
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
KVH+F++ DTSH I +L R +K+ GY ++
Sbjct: 428 RDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQV 487
Query: 447 PAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
+ HSE+LA+AFGLISTS G+ L +IKNLR+C DCH K++SK
Sbjct: 488 GSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKI 547
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EREI + D R+HHF DG CSCGD+W
Sbjct: 548 T----EREITIRDVNRYHHFKDGVCSCGDFW 574
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 169/644 (26%), Positives = 265/644 (41%), Gaps = 187/644 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
FE M ER+V SW M+ + G E + L + +GV AC+ L
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLSL------- 163
GK ++ +I + + V +++++ KCG + A F +D +++S
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346
Query: 164 ----------------------------------------LKHGKEIHPHHLKKDDLESD 183
L G+++H LK +
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRA- 405
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------F 230
++V+NSL+ YAKC L+ A FS + ++ +VSW +M+ Y+ G
Sbjct: 406 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDT 465
Query: 231 REEIT------GFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKE 283
R IT + Q+G E L+ +S M+ Q D+ P+ ++ + CA + KLG +
Sbjct: 466 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 525
Query: 284 IHGYVLRHHIQLSTGVGIALISI----------QGL-----GTGSFVWNSLIDMYGRCGA 328
I G+ ++ + L+ V A I++ Q L G WN++I Y + G
Sbjct: 526 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGM 585
Query: 329 IQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
++ EG YF+MM + + + P +E +
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG + + + KMP +P++ C N ++AE AA+H+FEL+
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
SG KVH F A D SH
Sbjct: 706 DSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765
Query: 423 VHKISEKLMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
V I KL L +I +GY++ HSEKLA+AFG++S P+ ++KNLR+C
Sbjct: 766 VIAIRNKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRIC 825
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ K +S +RE ++ D RFHHF G+CSCGDYW
Sbjct: 826 GDCHTVIKLISSVT----DREFVIRDGVRFHHFKSGSCSCGDYW 865
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 64/293 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F++MP R+V SW ++M Y + + + F + G V K+C L
Sbjct: 93 LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+ + F G+ V+ ++DMF++CG ++ AS F + +
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE------------ 200
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ NS++ YAK + A F + ++ +VSWN M+A
Sbjct: 201 -----------RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA------ 243
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+Q G AL M + ++ ++ + + L ACA++ GK++H V+
Sbjct: 244 ------ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI 297
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
R Q+ +V ++LI++Y +CG+ + E R F ++
Sbjct: 298 RSLPQIDP----------------YVASALIELYAKCGSFK--EAKRVFNSLQ 332
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L+ D E +++ +N +M+ YAK L A F ++ ++ + SWN +++GY F+
Sbjct: 62 LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGY----FQAR- 116
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ DG LE F M ++ D PN + V+ +C + +L ++ G +
Sbjct: 117 ----RFLDG---LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDF 169
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
V A L+DM+ RCG +
Sbjct: 170 WGDPDVETA----------------LVDMFVRCGYV 189
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 170/639 (26%), Positives = 262/639 (41%), Gaps = 173/639 (27%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
VT + + ++ LG Q+H +I G E +G +F
Sbjct: 137 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYG 196
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC--SELKDHRVGKDVYDYMI 122
+ +RN + ++MG G E+ + LF + + V + L + + K+ +
Sbjct: 197 LDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFR 256
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+K EG + P + CG L + G++IH + + +L+
Sbjct: 257 EMKIEGLKMDQYPFGSVLPACG---------------GLGAINDGRQIHAC-IIRTNLQD 300
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V ++L+D Y KC+ L A F ++KQK++VSW AM+ GY Q G
Sbjct: 301 HIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG------------QTGR 348
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV----LRHHIQLSTG 298
A++ F M ++ + P+ +L ++ACA + + G + HG L H+I +S
Sbjct: 349 AGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNS 408
Query: 299 V--------------------------------------GIALISIQ--------GLGTG 312
+ G A+ +IQ GL
Sbjct: 409 LVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPD 468
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+I R G ++K G RYFE+M EY + P+ Y CM+DL +R+G+ ++ +
Sbjct: 469 GVTLTGVISACSRAGLVEK--GQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMG 526
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
F+ MPF P + C N +I + AA L EL+P LSS
Sbjct: 527 FINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 586
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
GK+HSF A D S +I KL LY +I
Sbjct: 587 WDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIID 646
Query: 440 IGYMK---------------RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY ++ C HSE+LA+AFGLI G P+RV KNLR+C DCH+
Sbjct: 647 NGYKPDTSFVHHDVEEAVKIKMLNC-HSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHN 705
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++S REI++ D RFH F DG CSCGD+W
Sbjct: 706 ATKHISSVTG----REILVRDAVRFHRFKDGTCSCGDFW 740
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 47/256 (18%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKD 110
FEK+P+R+ +W ++ Y++ G V + ++ + + K S
Sbjct: 92 FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGH 151
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+GK ++ +I + FE V P+LDM+ K G + A F D
Sbjct: 152 VSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLD------------- 198
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ + ++ N+LM C ++ A F + +K VSW+AM+ G A G
Sbjct: 199 ----------DRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGM 247
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+E A+E F M ++ + VL AC + G++IH ++R
Sbjct: 248 EKE------------AIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR 295
Query: 291 HHIQLSTGVGIALISI 306
++Q VG ALI +
Sbjct: 296 TNLQDHIYVGSALIDM 311
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 89/236 (37%), Gaps = 60/236 (25%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG-------- 60
+PD T+ A+ C +++LE G Q H I G+ L G
Sbjct: 365 DPDHYTLGQAI--SACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDS 422
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSEL 108
+F +M R+ SWT+M+ Y G E + LF ++ GV ACS
Sbjct: 423 TRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRA 482
Query: 109 KDHRVGKDVYDYMIS----IKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDF----- 158
G+ ++ MI+ + G+ +C ++D+F + GR+E A G F
Sbjct: 483 GLVEKGQRYFELMINEYGIVPSNGHYSC----MIDLFSRSGRIEEAMGFINGMPFRPDAI 538
Query: 159 ---------SNLSLLKHGK-------EIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
N L+ GK E+ PHH L S + + D A+ R
Sbjct: 539 GWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLR 594
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 35/153 (22%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ +L N+L+ Y+K +L F K+ + V+WN ++ GY+L G
Sbjct: 66 QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLV--------- 116
Query: 241 GDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A++ ++ M++ D N ++L +L + LGK+IHG V++
Sbjct: 117 ---GAAVKAYNTMMK-DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK-------- 164
Query: 299 VGIALISIQGLGTGSF--VWNSLIDMYGRCGAI 329
LG S+ V + L+DMY + G I
Sbjct: 165 ----------LGFESYLLVGSPLLDMYSKVGCI 187
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 173/649 (26%), Positives = 255/649 (39%), Gaps = 215/649 (33%)
Query: 18 PDECTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMF-------------- 62
PD T+T L P+ L L Q+H H I +F+
Sbjct: 421 PDHYTMTSVLKAASSLPE--GLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEA 478
Query: 63 EKMPERNVF---SWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
E + RN F +W +MM Y + + LF L+ +G V K C L
Sbjct: 479 EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLF 538
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
GK V+ Y I ++ + V +LDM++KCG M A F+
Sbjct: 539 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLIS 598
Query: 156 ----------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLE 181
K S L+ L+ G++IH + LK +
Sbjct: 599 GCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN-CT 657
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD V SL+D YAKC + A+C F +I+ ++ +WNAML G A Q+G
Sbjct: 658 SDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLA------------QHG 705
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+G+ AL+ F +M ++P+ ++ GVL+AC+
Sbjct: 706 EGKEALQLFKQMESLGIKPDKVTFIGVLSACSH--------------------------- 738
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
GL + ++ +Y M ++Y ++P +E Y C+ D L
Sbjct: 739 -----SGLVSEAY---------------------KYIRSMHRDYGIKPEIEHYSCLADAL 772
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG + N + M E S++ C + + + A L ELEPL S
Sbjct: 773 GRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 832
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+H F+ D S+ I +
Sbjct: 833 LLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYK 892
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ + +IK+ GY+ K HSEKLA+AFGL+ST P +P+RVIK
Sbjct: 893 KVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIK 952
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ KY+SK +REI++ D RFH F DG CSCGDYW
Sbjct: 953 NLRVCGDCHNAMKYISKV----YDREIVLRDANRFHRFKDGICSCGDYW 997
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 131/335 (39%), Gaps = 92/335 (27%)
Query: 13 MDLTNPD-EC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------- 60
MD+ D EC VT+ L+ +L++L LG QVH + G++L +
Sbjct: 311 MDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKL 370
Query: 61 --------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
+F M ER++ SW S++ E V LF L+ C DH
Sbjct: 371 RKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLL------RCGLKPDHY 424
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
V S+ EG L K+IH
Sbjct: 425 TMTSVLKAASSLP-EG-----------------------------------LSLSKQIHV 448
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
H +K +++ +D V+ +L+D Y++ R +K A F + LV+WNAM++GY
Sbjct: 449 HAIKTNNV-ADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGY------- 499
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
TQ DG LE F+ M + + + +L+ VL C + GK++H Y ++
Sbjct: 500 -----TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIK-- 552
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G +V + ++DMY +CG
Sbjct: 553 --------------SGYDLDLWVSSGILDMYVKCG 573
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 134/300 (44%), Gaps = 56/300 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD-HRVGKDVYD 119
+FE+MP R+V W M+ Y +G+ EE ++L G++ L+ R+ D +
Sbjct: 209 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSE 268
Query: 120 YMISIKFE-GNACV-------KRPVLDMFIKCGR--------MEMASGEFEEKDFS---- 159
FE GN + +L ++ G+ M+M + E +
Sbjct: 269 AGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILV 328
Query: 160 -----NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
L L G+++H LK L+ L V+NSL++ Y K R + +A F+ + ++
Sbjct: 329 LATAVRLDSLALGQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERD 387
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
L+SWN+++AG A E A+ F ++++ ++P+ +++ VL A +
Sbjct: 388 LISWNSVIAGIAQSDLEVE------------AVCLFMQLLRCGLKPDHYTMTSVLKAASS 435
Query: 275 V-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ +G L K+IH + ++ + +A SFV +LID Y R +++ E
Sbjct: 436 LPEGLSLSKQIHVHAIKTN-------NVA---------DSFVSTALIDAYSRNRCMKEAE 479
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
+D + S L GK H L ++ LVNN L+ Y+KC L A F K+ ++ L
Sbjct: 54 RDAISTSDLMLGKCTHARILALEENPERFLVNN-LISMYSKCGSLTYARRVFDKMPERDL 112
Query: 216 VSWNAMLAGYALG--GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
VSWN++LA YA G E + + A F + Q + + ++LS +L C
Sbjct: 113 VSWNSILAAYAQSSEGVVENV---------KEAFLLFRILRQDVVYTSRMTLSPMLKLCL 163
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ HGY + GL FV +L+++Y + G ++ E
Sbjct: 164 HSGYVCASESFHGYACK----------------IGLDGDDFVAGALVNIYLKFGKVK--E 205
Query: 334 GWRYFEMM 341
G FE M
Sbjct: 206 GRVLFEEM 213
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 67/234 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMY-----NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
+F+KMPER++ SW S++ Y V+ +E LF +L + VY + L
Sbjct: 103 VFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLS------ 156
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
P+L + + G + AS F HG +
Sbjct: 157 -------------------PMLKLCLHSGYV-CASESF------------HG------YA 178
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K L+ D V +L++ Y K +K F ++ + +V WN ML Y GF+EE
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEE-- 236
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISL------SGVLAACAQVKGFKLGKE 283
A++ S + + PN I+L SG + QVK F+ G +
Sbjct: 237 ----------AIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGND 280
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 165/634 (26%), Positives = 270/634 (42%), Gaps = 195/634 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------LCAFLG---------MFEKM 65
T+ L+ + C + ++ +LGI +H+ ++ CG L + G +F+++
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+R+V +WT++ Y G + E ++LF +++ GV D Y +++ +
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGV------------KPDSY-FIVQVL 219
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ACV LD SGE+ ++K+ +E+ +++ +
Sbjct: 220 ---SACVHVGDLD-----------SGEW---------IVKYMEEM--------EMQKNSF 248
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L++ YAKC ++ A F + +K +V+W+ M+ GYA F +E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE------------ 296
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
+E F +M+Q +++P+ S+ G L++CA + LG+ + RH + + ALI
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 305 ----------------------------SIQGLGTGSFVWNSLIDMYGR----------- 325
+I GL V S ++G+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFA-VFGQTEKLGISPDGS 415
Query: 326 ------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
CG + +G R+F + Y ++ +E Y CMVDL RAG DD +
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MP P++ C + +AE + L LEP ++G
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
KVH F+A D SH L KI KL L +E++ +G++
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSEKLA+A GLIST G +RV+KNLR+CGDCH K +
Sbjct: 596 PTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK + REI++ DN RFH F +G+CSC DYW
Sbjct: 656 SKITR----REIVVRDNNRFHCFTNGSCSCNDYW 685
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 174/648 (26%), Positives = 271/648 (41%), Gaps = 192/648 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLI-----------VCGVELCAFLG------ 60
PD T T +L C +L++LE G Q+H +I VEL A G
Sbjct: 289 PDSTTYTSSL--TACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAK 346
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F + +RN SWT ++G + G + E V LF ++++ + D +
Sbjct: 347 RVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELF------------NQMRAELMAVDQFA 394
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
I + C C M++ G ++H LK
Sbjct: 395 LATLI----SGC-----------CNTMDICLGS----------------QLHSLCLKSGH 423
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---------- 229
+ ++V+NSL+ YAKC L+ A F+ + ++ +VSW M+ Y+ G
Sbjct: 424 TRA-VVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFD 482
Query: 230 ---FREEIT------GFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFK 279
R IT + Q+G E L+ +S M+ + D+ P+ ++ + CA + K
Sbjct: 483 DMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANK 542
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYG 324
LG +I G+ ++ + L T V A+I++ L V WN++I Y
Sbjct: 543 LGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYS 602
Query: 325 RCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAM 351
+ G ++ EG YF+MMK+++N+ P +
Sbjct: 603 QHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGL 662
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E + CMVDLL RAG + N + +MP +P++ C N D+AE AA+HLF+
Sbjct: 663 EHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFD 722
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
L+ SG +VH F A D
Sbjct: 723 LDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDV 782
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKN 475
SH V I EKL L +I +GY++ HSEKLA+AFG++S P+ ++KN
Sbjct: 783 SHPQVIAIREKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKN 842
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K +S +RE ++ D RFHHF G+CSC DYW
Sbjct: 843 LRICDDCHTVIKLISTVT----DREFVIRDGVRFHHFKGGSCSCMDYW 886
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 140/333 (42%), Gaps = 73/333 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F +MP R+V SW ++M Y G + +++F + G V K+C L
Sbjct: 114 LFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALG 173
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
H V + + + + V+ ++DM ++CG M+ AS +F S +K+
Sbjct: 174 WHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQF--------SRIKN--- 222
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
++ NS++ YAK + A F + ++ +VSWN +
Sbjct: 223 ------------PTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMV-------- 262
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
I+ ++ G AL+ M ++P++ + + L ACA++ + GK++H V+
Sbjct: 263 ----ISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVI 318
Query: 290 RH--HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
R+ HI +V ++++++Y +CG + E R F ++ ++
Sbjct: 319 RNLPHID------------------PYVASAMVELYAKCGCFK--EAKRVFSSLRDRNSV 358
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ ++ + G F +++ +M E
Sbjct: 359 -----SWTVLIGGFLQYGCFSESVELFNQMRAE 386
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 36/205 (17%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L+ + E +++ +N +M+ YAK L A F ++ + + SWN +++GY
Sbjct: 83 LRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGY--------- 133
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q G AL+ F M QT D PN + V+ +C + ++ ++ G + +
Sbjct: 134 ---YQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDS 190
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
Q V A L+DM RCGA+ + + F +K P +
Sbjct: 191 QDDPDVQTA----------------LVDMLVRCGAM--DFASKQFSRIKN-----PTIIC 227
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMP 378
M+ A++ D L K MP
Sbjct: 228 RNSMLVGYAKSHGVDHALEIFKSMP 252
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 222/529 (41%), Gaps = 179/529 (33%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
FE MP RN+ SW +++ Y + ++ + LF ++ E
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA--------------------- 235
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+ NA VL + C SNLS L GK+IH +K L
Sbjct: 236 ---NVQPNASTLSSVL---LGC---------------SNLSALGFGKQIHQWCMKLP-LS 273
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+L V SL+ Y KC L A F ++ + +V+WNAM++GYA Q+G
Sbjct: 274 RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA------------QHG 321
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
DG+ A+ F RM ++PN I+ VL AC IH TG
Sbjct: 322 DGKEAINLFERMKDEGVEPNWITFVAVLTAC-----------IH-----------TG--- 356
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
L D RC FE M++ Y +EP ++ Y CMVDLL
Sbjct: 357 -----------------LCDFGIRC-----------FEGMQELYGIEPRVDHYSCMVDLL 388
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ + ++ ++ MPFEP + C N + AE AA L E +P S+G
Sbjct: 389 CRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYV 448
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F + D H ++ I E
Sbjct: 449 QLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHE 508
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
KL +L +K +GY+ + HSEKLA++FGLIST+PG LR+ K
Sbjct: 509 KLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFK 568
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K +SK E +REII+ D RFHHF G CSCGDYW
Sbjct: 569 NLRVCGDCHNAAKVISKIE----DREIILRDTTRFHHFRGGHCSCGDYW 613
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 28 IFQRCPKL---NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84
I Q C KL NL +G + + CG +L + +F +M R+V +W +M+ Y G
Sbjct: 263 IHQWCMKLPLSRNLTVGTSLVSMYCKCG-DLSSACKLFGEMHTRDVVAWNAMISGYAQHG 321
Query: 85 YYEEIVNLFYLLIDEGV 101
+E +NLF + DEGV
Sbjct: 322 DGKEAINLFERMKDEGV 338
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 195/703 (27%), Positives = 281/703 (39%), Gaps = 221/703 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHA---HLIVCGVEL---CAFLGMFEK------- 64
PD T + C + + LG+ H L +CG EL + L M+ K
Sbjct: 297 PD--VATMVTVIPLCARQGEVRLGMVFHGLALKLGLCG-ELKVNSSLLDMYSKCGYLCEA 353
Query: 65 -----MPERNVFSWTSMMGMY----NVLGYYEEI----------VNLFYLLIDEGVYKAC 105
E+NV SW SM+G Y + G +E + VN LL V C
Sbjct: 354 RVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLL---NVLPVC 410
Query: 106 SELKDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGRMEMASGEF----------- 153
E K+++ Y + F + + V + + KCG + A G F
Sbjct: 411 EEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSW 470
Query: 154 ----------------------------EEKDFSNLSLLKH---------GKEIHPHHLK 176
E F+ SLL GKEIH L+
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLR 530
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ E D + SL+ Y +C + +A F +++K+LV WN M I G
Sbjct: 531 -NGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTM------------ING 577
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
F+Q AL+ F +M+ + + P+ IS+ G L AC+QV +LGKE+H + ++ H+
Sbjct: 578 FSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEH 637
Query: 297 TGVGIALISIQGLG---------------TGSFVWNSLIDMYGRCG----AIQ-----KN 332
+ V +LI + G WN LI YG G AI+ +N
Sbjct: 638 SFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQN 697
Query: 333 EGWR------------------------YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
G+R Y M+ + ++P +E Y C+VD+L RAG+ +
Sbjct: 698 AGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLN 757
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----------- 407
+ L + ++P +P S C + DI E A L EL P +
Sbjct: 758 EALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYA 817
Query: 408 --------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYS 435
GKV F+ GD S KI + + L
Sbjct: 818 RLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEK 877
Query: 436 EIKKIGYMKRIPAC---------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+I KIGY K +C HSEKLA++FGL++T+ G+ LRV KNLR+C
Sbjct: 878 KINKIGY-KPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICV 936
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K VSK +K REII+ DN RFHHF +G CSCGDYW
Sbjct: 937 DCHNAIKLVSKIDK----REIIVRDNKRFHHFKNGFCSCGDYW 975
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 161/379 (42%), Gaps = 90/379 (23%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----- 60
V + ++ + LT T + + C + ++ LG VH + V F+G
Sbjct: 180 VFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIA 239
Query: 61 -------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI--DEG----- 100
+F+KMP+RN+ SW S+M G +EE LF L+ DEG
Sbjct: 240 MYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDV 299
Query: 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------- 146
V C+ + R+G + + + G V +LDM+ KCG +
Sbjct: 300 ATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT 359
Query: 147 ---------EMASGEFEEKDF------------------SNLSLLK------------HG 167
M G +++DF + ++LL
Sbjct: 360 NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL 419
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
KEIH + L+ ++SD LV N+ + YAKC L A F ++ K + SWNA++ G+
Sbjct: 420 KEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQ 479
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
GF + AL+ + M + ++P+ +++ +L+ACA++K GKEIHG
Sbjct: 480 NGFPRK------------ALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGS 527
Query: 288 VLRHHIQLSTGVGIALISI 306
+LR+ +L + I+L+S+
Sbjct: 528 MLRNGFELDEFICISLVSL 546
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 147/389 (37%), Gaps = 108/389 (27%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHL---------IVCGVELCAFLGM----------FEKMP 66
L+ Q C + N+E+G ++H + +V L + F
Sbjct: 97 GLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASR 156
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID-----------EGVYKACSELKDHRVGK 115
+N+F W +++ Y + + V +F +I V KAC + D R+G+
Sbjct: 157 RKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGE 216
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKHG 167
V+ + + K + V ++ M+ K G +E A F++ NL + L++G
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276
Query: 168 KEIHPHHLKKDDLESD-----------------------------------------LLV 186
+ L K L D L V
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKV 336
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+SL+D Y+KC YL A F +K+++SWN+M+ GY ++ D A
Sbjct: 337 NSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGY------------SKDRDFRGA 383
Query: 247 LEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
E +M D ++ N ++L VL C + F KEIHGY LRH
Sbjct: 384 FELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGF------------ 431
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+ + V N+ + Y +CG++ EG
Sbjct: 432 ---IQSDELVANAFVAGYAKCGSLHYAEG 457
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 41/228 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH ++D+++ L+ Y+ C + F+ ++K+L WNA+L+GY
Sbjct: 112 GRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYL 171
Query: 227 LGG-FREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEI 284
FR+ A+ F MI T+ P+ +L V+ AC V +LG+ +
Sbjct: 172 RNSLFRD-------------AVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAV 218
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
HG+ L+ + + FV N+LI MYG+ G ++ + F+ M +
Sbjct: 219 HGFALKTKVL----------------SDVFVGNALIAMYGKFGFVE--SAVKVFDKMPQR 260
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ Y C+ + G F+++ K + + E PD+A
Sbjct: 261 NLVSWNSVMYACLEN-----GVFEESYGLFKGL---LNGDEGLMPDVA 300
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 167/643 (25%), Positives = 257/643 (39%), Gaps = 213/643 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMP 66
Y I C + G +VH H+I +L GMF++MP
Sbjct: 65 YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMP 124
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+RNV SWT+M+ Y+ G+ E +NLF ++ + +C G+
Sbjct: 125 QRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 184
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD---------------- 157
++ I +E + V +LDM+ K GR+ A G F E+D
Sbjct: 185 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 244
Query: 158 -----------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
S L+ L HGK++H H L+ +L+N
Sbjct: 245 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLN- 303
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D Y+KC + A F + ++ +SWNAML G++++G LE
Sbjct: 304 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAML------------VGYSKHGMAREVLE 351
Query: 249 FFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M + + ++P++I+ VL+ C+ + +G EI
Sbjct: 352 LFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI----------------------- 388
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
++ M+ + +EP + Y C+VDLL RAG+
Sbjct: 389 -----------------------------FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRV 419
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
++ +F+KKMPF P++A C + +I + L ELEP ++G
Sbjct: 420 EEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLY 479
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F A D +H +++ K+ L
Sbjct: 480 ASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELS 539
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ K+ GY+ + GHSEKLALAFGLI+T G+ +RVIKNLR+C
Sbjct: 540 IKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICV 599
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VS R R +I+ D RFH+ V G CSCGDYW
Sbjct: 600 DCHSFAKFVS----RLYARTVILRDKNRFHNIVGGVCSCGDYW 638
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 31/172 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------------- 53
L + + + + +VTYA + L L G QVH+H++ G
Sbjct: 251 LFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYS 310
Query: 54 ---ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
+C +F+ MPER SW +M+ Y+ G E++ LF L+ +E
Sbjct: 311 KCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYL 370
Query: 100 GVYKACSELKDHRVGKDVYDYMISIK--FEGNACVKRPVLDMFIKCGRMEMA 149
V CS + +G +++ M++ K E + V+D+ + GR+E A
Sbjct: 371 AVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 422
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 175/650 (26%), Positives = 256/650 (39%), Gaps = 216/650 (33%)
Query: 18 PDECTVTYALIFQRCPKLNN-LELGIQVHAHLIVCGVELCAFLG---------------- 60
PD+ TV A + + C L L Q+HA + GV L +F+
Sbjct: 1034 PDQFTV--ASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F ++ SW ++M Y V G + + + L+ L+ + G KA L
Sbjct: 1092 EFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGL 1151
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------- 155
+ GK ++ ++ F + V VLDM++KCG ME A F E
Sbjct: 1152 VGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMI 1211
Query: 156 -----------------------------------KDFSNLSLLKHGKEIHPHHLKKDDL 180
K S L+ L+ G++IH ++ K +
Sbjct: 1212 SGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHA-NIVKLNC 1270
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D V SL+D YAKC ++ A F + + + SWNAM I G Q+
Sbjct: 1271 AFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAM------------IVGLAQH 1318
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G+ + AL+FF M + P+ ++ GVL+AC+
Sbjct: 1319 GNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHS------------------------- 1353
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+S + Y ++QKN Y +EP +E Y C+VD
Sbjct: 1354 -GLVS---------------EAYENFYSMQKN------------YGIEPEIEHYSCLVDA 1385
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
L+RAG+ ++ + MPFE S++ C + + + A L LEP S
Sbjct: 1386 LSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAY 1445
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
KVH F+AGD SH I
Sbjct: 1446 VLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIY 1505
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
K+ + I++ GY+ K HSEKLA+A+GL+ T P + LRVI
Sbjct: 1506 NKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVI 1565
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS KY+SK K REI++ D RFHHF +G CSCGDYW
Sbjct: 1566 KNLRVCGDCHSAIKYISKVFK----REIVLRDANRFHHFRNGICSCGDYW 1611
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 30/176 (17%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L+ L+ GK+IH + + L+ + V N L++ Y K + A F ++ + L+SW
Sbjct: 946 AGLNCLELGKQIHGI-VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISW 1004
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG- 277
N M++G L G E G F +++ + P+ +++ VL AC+ ++G
Sbjct: 1005 NTMISGCTLSGLEECSVGM------------FVHLLRDSLLPDQFTVASVLRACSSLEGG 1052
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ L +IH ++ + L SFV +LID+Y + G +++ E
Sbjct: 1053 YYLATQIHACAMKAGVVLD----------------SFVSTALIDVYSKRGKMEEAE 1092
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGG-----FREEITGFTQYGDGETALEFFSRMIQ 255
+V CK + ++ K ++ L Y G + + ++ F Q G+ A++ F MI
Sbjct: 869 RVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMIN 928
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ + + ++ +L A + +LGK+IHG V+R + VG
Sbjct: 929 SRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVG--------------- 973
Query: 316 WNSLIDMYGRCGAIQK 331
N LI+MY + G++ +
Sbjct: 974 -NCLINMYVKAGSVSR 988
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLV 216
S+LSL GK H L D V N+L+ YAKC L A F + LV
Sbjct: 670 SDLSL---GKRAHARILTSGH-HPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLV 725
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
+WNA+L+ A + DG F + ++ + +L+ V C
Sbjct: 726 TWNAILSALAAHADKSH--------DG---FHLFRLLRRSVVSTTRHTLAPVFKMCLLSA 774
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ +HGY ++ +Q V AL++I
Sbjct: 775 SPSASESLHGYAVKIGLQWDVFVAGALVNI 804
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 174/639 (27%), Positives = 261/639 (40%), Gaps = 206/639 (32%)
Query: 43 QVHAHLIVCGVELCAF--------------------LGMFEKMPERNVFSWTSMMGMYNV 82
QVHAH+I G+ C++ L +F ++ N F WT+M+ Y +
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 83 LGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
G E N + + +GV +S F +F
Sbjct: 120 QGLLSESTNFYTRMRRDGVGP------------------VSFTFSA----------LFKA 151
Query: 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
CG N+ L GK++H + SDL V NS++D Y KC +L
Sbjct: 152 CGAA------------LNMDL---GKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGC 196
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDG 243
A F ++ ++ +VSW ++ YA G E +TG+ Q G
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRP 256
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV--GI 301
+ ALE+F +M M+ + ++L+GV++ACAQ+ K I R S V G
Sbjct: 257 KEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGS 316
Query: 302 ALISIQGLGTGS----------------FVWNSLI---DMYGRCGA------------IQ 330
ALI + GS F ++S+I M+GR + I+
Sbjct: 317 ALIDMYS-KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375
Query: 331 KN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
N +G + F M+K + + P+ + Y CMVDLL RAG ++ L+
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
+K MP EP+ C NPDIA+ AA LF+LEP LS+
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGR 495
Query: 408 -----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
G++H F AGDT+H +I + L +L ++
Sbjct: 496 WEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY + + HSEKLALA+GL+ T G ++++KN+R+C DCH+
Sbjct: 556 SHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHN 615
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V A REII+ DN RFHHF +G CSCG++W
Sbjct: 616 ----VMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 163/580 (28%), Positives = 247/580 (42%), Gaps = 178/580 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE++P R+ SW +M+ Y G +EE + F E+K V +
Sbjct: 220 LFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFF------------QEMKRANVAPN-EST 266
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+++ +AC + SG E ++ + HG L
Sbjct: 267 MVTVL---SACAQ----------------SGSLELGNWVRSWIEDHG------------L 295
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREEITGFTQ 239
S+L + N+L+D Y+KC L A F I +K ++SWN M+ GY+ + ++E
Sbjct: 296 GSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKE------- 348
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS-TG 298
AL F +M Q++++PN ++ +L ACA + LGK IH Y+ + + L+ T
Sbjct: 349 ------ALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTS 402
Query: 299 VGIALISI--------------QGLGTGSF-VWNSLID---MYGRCGAI------QKNEG 334
+ +LI + G+ S WN++I M+G ++EG
Sbjct: 403 LWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEG 462
Query: 335 W------------------------RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+ + F M ++Y++ P ++ Y CM+DLL RAG FD+
Sbjct: 463 FEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEA 522
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------- 409
MK M +P A C N ++ E AA+HLFELEP + G
Sbjct: 523 EALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATA 582
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
VH F+ GD H I + L + +
Sbjct: 583 GRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLL 642
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+K G++ K HSEKLA+AFGLIST P + +R++KNLR+CG+CH
Sbjct: 643 EKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCH 702
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S K +SK REII D RFHHF DG+CSC DYW
Sbjct: 703 SAIKLISKI----FNREIIARDRNRFHHFKDGSCSCMDYW 738
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 109/237 (45%), Gaps = 42/237 (17%)
Query: 120 YMISIKFEGNACVKRPV--LDMFIK---CG-RMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
++ + GN+ PV +D +++ CG + F K + + + GK+IH H
Sbjct: 98 FIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGH 157
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
LK LESD V+ SL++ YA+ L A FSK + VS+ A++ GY L G ++
Sbjct: 158 VLKLG-LESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDD 216
Query: 234 -------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
I G+ Q G E AL FF M + ++ PN ++ VL+ACAQ
Sbjct: 217 ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQ 276
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
+LG + ++ H GLG+ + N+LIDMY +CG + K
Sbjct: 277 SGSLELGNWVRSWIEDH----------------GLGSNLRLVNALIDMYSKCGDLDK 317
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 46/248 (18%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQK 213
K F NL K+IH + K L + + L++F A + L A F I+Q
Sbjct: 43 KSFQNL------KQIHSQ-IIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQP 95
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+ WN M+ G +L + G A++F+ RM+ ++PN+ + +L +CA
Sbjct: 96 NQFIWNTMIRGNSLSS--------SPVG----AIDFYVRMLLCGVEPNSYTFPFLLKSCA 143
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+V + GK+IHG+VL+ GL + FV SLI+MY + G +
Sbjct: 144 KVGATQEGKQIHGHVLK----------------LGLESDPFVHTSLINMYAQNGELG--- 184
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE 393
Y E++ + ++ A+ + ++ G DD +++P A N IA
Sbjct: 185 ---YAELVFSKSSLRDAV-SFTALITGYTLRGCLDDARRLFEEIPVR--DAVSWNAMIAG 238
Query: 394 HAARHLFE 401
+A FE
Sbjct: 239 YAQSGRFE 246
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 38/180 (21%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAH------------LIVC 51
K L + M +N + VT+ I C L L+LG +HA+ L
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTS 406
Query: 52 GVELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----- 99
+++ A G +F M +++ SW +M+ + G+ + LF + DE
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPD 466
Query: 100 -----GVYKACSELKDHRVGKD-----VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
GV ACS +G+ V DY IS K + C ++D+ + G + A
Sbjct: 467 DITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGC----MIDLLGRAGLFDEA 522
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 222/529 (41%), Gaps = 179/529 (33%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
FE MP RN+ SW +++ Y + ++ + LF ++ E
Sbjct: 246 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA--------------------- 284
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+ NA VL + C SNLS L GK+IH +K L
Sbjct: 285 ---NVQPNASTLSSVL---LGC---------------SNLSALGFGKQIHQWCMKLP-LS 322
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+L V SL+ Y KC L A F ++ + +V+WNAM++GYA Q+G
Sbjct: 323 RNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA------------QHG 370
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
DG+ A+ F RM ++PN I+ VL AC IH TG
Sbjct: 371 DGKEAINLFERMKDEGVEPNWITFVAVLTAC-----------IH-----------TG--- 405
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
L D RC FE M++ Y +EP ++ Y CMVDLL
Sbjct: 406 -----------------LCDFGIRC-----------FEGMQELYGIEPRVDHYSCMVDLL 437
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ + ++ ++ MPFEP + C N + AE AA L E +P S+G
Sbjct: 438 CRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYV 497
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F + D H ++ I E
Sbjct: 498 QLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHE 557
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
KL +L +K +GY+ + HSEKLA++FGLIST+PG LR+ K
Sbjct: 558 KLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFK 617
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K +SK E +REII+ D RFHHF G CSCGDYW
Sbjct: 618 NLRVCGDCHNAAKVISKIE----DREIILRDTTRFHHFRGGHCSCGDYW 662
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 28 IFQRCPKL---NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84
I Q C KL NL +G + + CG +L + +F +M R+V +W +M+ Y G
Sbjct: 312 IHQWCMKLPLSRNLTVGTSLVSMYCKCG-DLSSACKLFGEMHTRDVVAWNAMISGYAQHG 370
Query: 85 YYEEIVNLFYLLIDEGV 101
+E +NLF + DEGV
Sbjct: 371 DGKEAINLFERMKDEGV 387
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 151/588 (25%), Positives = 250/588 (42%), Gaps = 163/588 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+ P RNV SWT ++ Y+ G E V+ F ++ +G+ AC++LKD
Sbjct: 193 LLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKD 252
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
G+ ++ + + + ++DM+ KCG + A F+ G+
Sbjct: 253 LVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDAL----------GRGR 302
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
P N+++D Y K ++ VA F +++ + LV++N+++ GY GG
Sbjct: 303 RPQSW------------NAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGR 350
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E AL F +M + D++ + ++ +L ACA + G+ +H + +
Sbjct: 351 LRE------------ALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQ 398
Query: 291 HHIQLSTGVGIALI----------------------------------SIQGLGTGS--- 313
+++ +G AL+ + G+G +
Sbjct: 399 RLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458
Query: 314 FVW--------NSL--IDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
F W NS+ I + C + +EG YFE M+ +N+ P +E Y CM+DLL
Sbjct: 459 FFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLG 518
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
R+G D+ ++ ++ MP +P++ C + ++A +AA HL +LEP
Sbjct: 519 RSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQ 578
Query: 405 -----------------------------------LSSGKVHSFIAGDTSHSLVHKISEK 429
+G+VH FI D +H + +I+
Sbjct: 579 LYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAM 638
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
+ + +K +GY K HSEK+A+AFGLIS +P PL +IKN
Sbjct: 639 MEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKN 698
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCHS K +S R REII+ D RFHHF DG CSC D+W
Sbjct: 699 LRVCEDCHSAIKLIS----RIWNREIIVRDRSRFHHFRDGTCSCNDFW 742
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 40/193 (20%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----------- 233
LV+N ++ Y + A F I K V+W +++G A G ++
Sbjct: 141 LVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPAR 200
Query: 234 --------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I+G+++ G A++ F+ M+ ++P+ +++ G+L+ACAQ+K G+ +H
Sbjct: 201 NVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLH 260
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM---K 342
V + +S + +A LIDMY +CG I + W F+ + +
Sbjct: 261 KLVGEKGMLMSGKLVVA----------------LIDMYAKCGDIGR--AWEVFDALGRGR 302
Query: 343 KEYNMEPAMEQYC 355
+ + ++ YC
Sbjct: 303 RPQSWNAMIDGYC 315
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 166/637 (26%), Positives = 261/637 (40%), Gaps = 168/637 (26%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
+T++ + ++LG Q+H ++ G F+G +F++
Sbjct: 139 ITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDE 198
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---ACSELKDHRVGKDVYDYM 121
+ ERNV + +M+ G ++ LF+ + + + L + + + D
Sbjct: 199 VQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLF 258
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
++ EG A + + CG L LK GKEIH + +
Sbjct: 259 RDMRQEGMAMDQYTFGSVLTACG---------------GLRALKEGKEIHTL-IIRSGYN 302
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
++ V ++L+D Y KCR ++ A F ++ K++VSW AML GY GF EE
Sbjct: 303 HNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEE-------- 354
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+ F M + ++P+ +L V+++CA + + G + H L + V
Sbjct: 355 ----AVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSN 410
Query: 302 ALISIQG-----------LGTGSF----VWNSLIDMYGRCGAIQKN-------------- 332
ALI++ G SF W +L+ Y + G +
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKP 470
Query: 333 -------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
G +YFE M K++ + P + Y CM+DL RAG+ ++ NF
Sbjct: 471 DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNF 530
Query: 374 MKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS-------- 407
+ KMPF P S C N +I + AA L EL+P LSS
Sbjct: 531 INKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKW 590
Query: 408 ---------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
KV+ F A D S +I +L +L ++ +
Sbjct: 591 SNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEE 650
Query: 441 GYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + HSEKLA+AFGL+ G P+RV+KNLR+CGDCH+ T
Sbjct: 651 GYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNAT 710
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+SK +REI++ D RFH F DG CSCGD+W
Sbjct: 711 KYISKIS----QREILVRDAVRFHLFKDGTCSCGDFW 743
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 75/330 (22%)
Query: 22 TVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80
+TYA +F + P+ N+ + A+ +L +F MP R+ SW S++ Y
Sbjct: 55 NITYARHVFDKMPQPNSFSWNTMLSAY--SKSGDLSTMQEIFSIMPNRDGVSWNSLISGY 112
Query: 81 NVLGYYEEIVNLFYLLIDEGVY----------------KACSELKDHRVGKDVYDYMISI 124
G E V + ++ +GV + C +L G+ ++ ++
Sbjct: 113 VCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDL-----GRQIHGQIVKF 167
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
F V ++DM+ K G + +AS F+E E ++
Sbjct: 168 GFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQ-----------------------ERNV 204
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
++ N+++ + +K + F +K++ +SW M ITG Q G
Sbjct: 205 VMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTM------------ITGLIQNGLEA 252
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A++ F M Q M + + VL AC ++ K GKEIH ++R
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR-------------- 298
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
G FV ++L+DMY +C +++ E
Sbjct: 299 --SGYNHNVFVGSALVDMYCKCRSVRYAEA 326
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 43/203 (21%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N+L++ Y+K + A F K+ Q + SWN ML+ Y+ G
Sbjct: 44 NNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGV 103
Query: 230 -FREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
+ I+G+ YG A++ ++ M++ + N I+ S +L + LG++IHG
Sbjct: 104 SWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQ 163
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+++ G G FV +SL+DMY + G + + F+ ++
Sbjct: 164 IVKF----------------GFGAYVFVGSSLVDMYAKMGLVSVAS--QVFDEVQ----- 200
Query: 348 EPAMEQYCCMVDLLARAGQFDDT 370
E + Y M+ L R+G D+
Sbjct: 201 ERNVVMYNTMITGLLRSGMVKDS 223
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 71/174 (40%), Gaps = 37/174 (21%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG--------- 60
PD+ T+ + C L +LE G Q H +V G+ L G
Sbjct: 369 PDDFTL--GSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSN 426
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F++M R+ SWT+++ Y G E ++LF ++ +G V ACS
Sbjct: 427 QLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAG 486
Query: 110 DHRVGKDVYDYMIS----IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
G+ ++ M+ I F + ++D+F + GR+E A + FS
Sbjct: 487 LVERGQQYFESMLKDHGIIPFSDHYTC---MIDLFGRAGRLEEAKNFINKMPFS 537
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 168/644 (26%), Positives = 265/644 (41%), Gaps = 187/644 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
FE M ER+V SW M+ + G E + L + +GV AC+ L
Sbjct: 217 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 276
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLSL------- 163
GK ++ +I + + V +++++ KCG + A F +D +++S
Sbjct: 277 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 336
Query: 164 ----------------------------------------LKHGKEIHPHHLKKDDLESD 183
L G+++H LK +
Sbjct: 337 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRA- 395
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------F 230
++V+NSL+ YAKC L+ A FS + ++ +VSW +M+ Y+ G
Sbjct: 396 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT 455
Query: 231 REEIT------GFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKE 283
R IT + Q+G E L+ +S M+ Q D+ P+ ++ + CA + KLG +
Sbjct: 456 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 515
Query: 284 IHGYVLRHHIQLSTGVGIALISI----------QGL-----GTGSFVWNSLIDMYGRCGA 328
I G+ ++ + L+ V A I++ Q L G WN++I Y + G
Sbjct: 516 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGM 575
Query: 329 IQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
++ EG YF+MM + + + P +E +
Sbjct: 576 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 635
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG + + + KMP +P++ C N ++AE AA+H+FEL+
Sbjct: 636 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 695
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
SG KVH F A D SH
Sbjct: 696 DSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 755
Query: 423 VHKISEKLMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
V I K+ L +I +GY++ HSEKLA+AFG++S P+ ++KNLR+C
Sbjct: 756 VIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRIC 815
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ K +S +RE ++ D RFHHF G+CSCGDYW
Sbjct: 816 GDCHTVIKLISSVT----DREFVIRDGVRFHHFKSGSCSCGDYW 855
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 113/282 (40%), Gaps = 68/282 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R+V SW ++M + G + +C L + +
Sbjct: 109 LFDRMPRRDVASWNTLMSDTSR---------------PAGSWMSCGALGCRELAPQLLGL 153
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
F G+ V+ ++DMF++CG ++ AS F + +
Sbjct: 154 FWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE----------------------- 190
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ NS++ YAK + A F + ++ +VSWN M+A +Q
Sbjct: 191 RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA------------ALSQS 238
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G AL M + ++ ++ + + L ACA++ GK++H V+R Q+
Sbjct: 239 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDP--- 295
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+V ++LI++Y +CG+ + E R F ++
Sbjct: 296 -------------YVASALIELYAKCGSFK--EAKRVFNSLQ 322
>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 877
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 173/690 (25%), Positives = 276/690 (40%), Gaps = 208/690 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKMP 66
++ + C +LE G +VHA +I G V++ + LG +F K+P
Sbjct: 205 FSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVP 264
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
E +V SW + + + G+ + + L + G + KAC+ +G+
Sbjct: 265 ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQ 324
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF--------------- 158
++ +M+ + + + ++DM+ K G ++ A F+ ++D
Sbjct: 325 IHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQ 384
Query: 159 ------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
++L + +++H +K SD V N
Sbjct: 385 HAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHAL-AEKLGFLSDSHVVN 443
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y KC L A+ ++ +KH Y + F IT +Q GE A++
Sbjct: 444 GLIDSYWKCDCLNYAY----RVFEKH--------GSYDIIAFTSMITALSQCDHGEDAIK 491
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F M++ + P+ LS +L ACA + ++ GK++H ++++ G AL+
Sbjct: 492 LFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYA 551
Query: 305 ----------SIQGLG-TGSFVWNSLIDMYGRCGAIQK---------------------- 331
+ GL G W+++I + G ++
Sbjct: 552 KCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTS 611
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+E RYF MK+ + +E E Y CM+DLL RAG+ DD + + MPF+
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQ 671
Query: 381 PSSAE----------PCNPDIAEHAARHLFELEPLSSG---------------------- 408
++A +P++ AA LF LEP SG
Sbjct: 672 TNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVR 731
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH+FI GD SH I KL L + K GY+
Sbjct: 732 KLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVE 791
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K + HSE+LA+AF LIST G+P+RV KNLR+C DCH+ K++S
Sbjct: 792 VDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIV 851
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DGACSC DYW
Sbjct: 852 ----SREIIIRDINRFHHFRDGACSCRDYW 877
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 125/331 (37%), Gaps = 89/331 (26%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKD 116
ERN SW +M Y V +F ++ GV AC+ +D G+
Sbjct: 164 ERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRK 223
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKD---------------- 157
V+ +I ++ + ++DM+ K G + MA+ G+ E D
Sbjct: 224 VHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGH 283
Query: 158 --------------------FSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNN 188
F+ S+LK G++IH +K + +SD +
Sbjct: 284 DQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKA-NADSDNYIAF 342
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D YAK L A F I Q+ LV WNA+++G + G E AL
Sbjct: 343 GLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAE------------ALS 390
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F RM + N +L+ VL + A ++ +++H AL G
Sbjct: 391 LFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVH----------------ALAEKLG 434
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+ S V N LID Y +C + N +R FE
Sbjct: 435 FLSDSHVVNGLIDSYWKCDCL--NYAYRVFE 463
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 29/152 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEITGFT 238
L D+ V N+L+ Y ++ A F + +++ VSWN +++ Y
Sbjct: 131 LGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAY------------V 178
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+ A++ F M+ +QPN S V+ AC + + G+++H V+R
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIR-------- 230
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G F N+L+DMY + G I+
Sbjct: 231 --------TGYDKDVFTANALVDMYSKLGDIR 254
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 66/168 (39%), Gaps = 34/168 (20%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G IH H LK + N L+ FY+KCR A F +I VSW+++
Sbjct: 20 LLQGAHIHAHLLKSGLFA---VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSL-- 74
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+T ++ AL F M ++ N L VL CA GF G +
Sbjct: 75 ----------VTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVL-KCAPDAGF--GTQ 121
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
+H AL GLG FV N+L+ MYG G + +
Sbjct: 122 LH----------------ALAMATGLGGDIFVANALVAMYGGFGFVDE 153
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 171/624 (27%), Positives = 265/624 (42%), Gaps = 179/624 (28%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84
Y+ + +C L L+ G +HAH+ E L F ++ MY G
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNF-------------ILNMYAKCG 154
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144
EE +LF D KD+ + + I + L +F K
Sbjct: 155 SLEEAQDLF----------------DKMPTKDMVSWTVLISGYSQSGQASEALALFPK-- 196
Query: 145 RMEMASGEFEEKDFSNLSLLK---------HGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
M F+ +F+ SLLK HG+++H LK + ++ V +SL+D YA
Sbjct: 197 ---MLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYG-YDMNVHVGSSLLDMYA 252
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
+ +++ A F+ + K++VSWNA++AG+A + G+GE + F +M++
Sbjct: 253 RWAHMREAKVIFNSLAAKNVVSWNALIAGHA------------RKGEGEHVMRLFXQMLR 300
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF- 314
+P + S VLA CA + GK +H +V++ Q +G LI + +GS
Sbjct: 301 QGFEPTHFTYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYA-KSGSIK 358
Query: 315 ---------------VWNSLIDMYGRCG---------------AIQKNE----------- 333
WNS+I Y + G +Q NE
Sbjct: 359 DAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACS 418
Query: 334 -------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-- 384
G YFE+MKK + +E + + +VDLL RAG+ ++ F+++MP +P++A
Sbjct: 419 HSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVW 477
Query: 385 ----EPC----NPDIAEHAARHLFELEPLSSG---------------------------- 408
C N D+ +AA +FEL+P SG
Sbjct: 478 GALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKES 537
Query: 409 ---------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------- 443
+VH F+A D SH + +I ++ +IK+IGY+
Sbjct: 538 GVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFFM 597
Query: 444 ----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
+ + HSEKLALAF ++ T PG +R+ KN+R+CGDCHS K+ S R R
Sbjct: 598 NQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFAS----RVLGR 653
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF+ G CSC DYW
Sbjct: 654 EIIVRDTNRFHHFLHGMCSCRDYW 677
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 46/254 (18%)
Query: 136 VLDMFIKCGRMEMASGEFEE--KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
VLD+ I CG +E + + + L LK G+ IH H ++ E DL++ N +++
Sbjct: 92 VLDL-INCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAH-IQSSTFEDDLVLLNFILNM 149
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
YAKC L+ A F K+ K +VSW +++GY +Q G AL F +M
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGY------------SQSGQASEALALFPKM 197
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
+ QPN +LS +L A G+++H + L++ ++ VG
Sbjct: 198 LHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVG------------- 244
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTL 371
+SL+DMY R W + K +N A + + ++ AR G+ + +
Sbjct: 245 ---SSLLDMYAR---------WAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVM 292
Query: 372 NFMKKM---PFEPS 382
+M FEP+
Sbjct: 293 RLFXQMLRQGFEPT 306
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 29/160 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY+ + C +LE G VHAH+I G + A++G +F ++
Sbjct: 309 TYSSVLA-CASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 367
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
++++ SW S++ Y G E + LF ++ V ACS G+
Sbjct: 368 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 427
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
++ M K E V+D+ + GR+ A+ EE
Sbjct: 428 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEE 467
>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 161/588 (27%), Positives = 236/588 (40%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+FE +P +++ W +++ + G + E ++LF + EG V K+ + L+
Sbjct: 362 VFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEA 421
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN---------- 160
V+ I F ++ V ++D + KC + A+ FEE N
Sbjct: 422 ISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITA 481
Query: 161 --------------------------------------LSLLKHGKEIHPHHLKKDDLES 182
LS + GK++H H +K+ +
Sbjct: 482 LSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK-FMT 540
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ N+L+ YAKC ++ A FS + K +VSW+AM I G Q+G
Sbjct: 541 DVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM------------IGGLAQHGH 588
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G+ AL+ F RM+ + PN I+L+ VL AC
Sbjct: 589 GKRALDVFRRMVDERIAPNHITLTSVLCAC------------------------------ 618
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G + + +G YF MK+ + ++ E Y CM+DLL
Sbjct: 619 ---------------------NHAGLVDEAKG--YFSSMKEMFGIDRTEEHYSCMIDLLG 655
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG---- 408
RAG+ DD + + MPFE ++A +P++ + AA LF LEP SG
Sbjct: 656 RAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVL 715
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
+VH+FI GD SH I K
Sbjct: 716 LANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIYAK 775
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L + K GY+ K + HSE+LA+AF LIST G+P+RV KN
Sbjct: 776 LEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIRVKKN 835
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH K++SK REII+ D RFHHF DGACSCGDYW
Sbjct: 836 LRICRDCHVAFKFISKIV----SREIIIRDINRFHHFSDGACSCGDYW 879
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 140/355 (39%), Gaps = 91/355 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV------------ELCAFLG----MFEKMPERNVF 71
+ R +L LG +HAHL+ G+ C G +F++ P+
Sbjct: 10 LLTRYAATQSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDETPDPCHV 69
Query: 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK---------DHRVGKDVYDYMI 122
SW+S++ Y+ E + F + GV C+E D +G V+ +
Sbjct: 70 SWSSLVTAYSNNALPREALAAFRAMRARGVR--CNEFALPIVLKCAPDAGLGVQVHAVAV 127
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--KDFSNLSL----------------- 163
S G+ V ++ M+ G ++ A F+E +D + +S
Sbjct: 128 STGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAV 187
Query: 164 ------------------------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193
L+ G+++H + + + D+ N+L+D
Sbjct: 188 ELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAM-VVRTGYDKDVFTANALVDM 246
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y+K + +A F K+ + +VSWNA ++G L +G + ALE +M
Sbjct: 247 YSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL------------HGHDQHALELLLQM 294
Query: 254 IQTDMQPNTISLSGVL--AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ + PN +LS +L A A F LG++IHG++++ +G+AL+ +
Sbjct: 295 KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDM 349
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G IH H LK L + N L+ FY+KCR A F + VSW++++ Y+
Sbjct: 23 GAHIHAHLLKSGLLHA---FRNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYS 79
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E AL F M ++ N +L VL CA G LG ++H
Sbjct: 80 NNALPRE------------ALAAFRAMRARGVRCNEFALPIVL-KCAPDAG--LGVQVHA 124
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+ +ST GL FV N+L+ MYG G + +E R F+ ++ N
Sbjct: 125 ------VAVST----------GLSGDIFVANALVAMYGGFGFV--DEARRVFDEAARDRN 166
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 180/657 (27%), Positives = 274/657 (41%), Gaps = 194/657 (29%)
Query: 24 TYALIFQRCP-KLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
T +++ + C +N+ +G +H ++ G++L A L +F
Sbjct: 389 TLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGL 448
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
M E++ SW MM Y +G ++ V+LF L GKD + I
Sbjct: 449 MAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL----------------PGKDAASWNTMI 492
Query: 125 K-FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIHPHHLK 176
N C +R L++ K M A F + FS +LS+L GK+IH LK
Sbjct: 493 DGLMRNGC-ERVALELLYK---MVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLK 548
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK---------------HLVSWNAM 221
L+ D V NSL+D Y KC ++ A F + Q+ VSW++M
Sbjct: 549 VGVLD-DGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSM 607
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++GY Q G E AL+ FS MI + ++ + +L+ V++ACA +LG
Sbjct: 608 VSGY------------VQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655
Query: 282 KEIHGYVLR--HHIQLSTGVGIA-------------LISIQGLGTGSFVWNSLID---MY 323
+++HGY+ + H + + G I LI Q +W S+I ++
Sbjct: 656 RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALH 715
Query: 324 GR-----------------------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQ 353
G+ G + EG +YF +M++ Y + P E
Sbjct: 716 GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEH 775
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
+ CMVDL RAG+ ++ F+ S+ C N ++ + L ELE
Sbjct: 776 FTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELE 835
Query: 404 PLSSG-------------------------------------------KVHSFIAGDTSH 420
P +G +VHSF+ GD SH
Sbjct: 836 PFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSH 895
Query: 421 SLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSP 466
KI L L +K+IGY +++ HSEKLA+A+G+IST+P
Sbjct: 896 PQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAP 955
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+P+RV+KNLR+C DCH+ KY S+ REII+ D +RFHHF G CSC DYW
Sbjct: 956 GTPIRVMKNLRVCIDCHNFIKYASEL----LGREIIIRDIHRFHHFKHGHCSCADYW 1008
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 144/332 (43%), Gaps = 74/332 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE-LK 109
MFE++P+ +VFSWT ++ + +G +++ LF + D+G V K+CS +
Sbjct: 343 MFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVN 402
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
D R+GK ++ +++ + +A + +LD ++KC A EK F ++
Sbjct: 403 DSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYA-----EKLFGLMA------- 450
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
E D + N +M Y + ++ + F ++ K SWN M
Sbjct: 451 -----------EKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTM-------- 491
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
I G + G ALE +M+ N ++ S L + + LGK+IH VL
Sbjct: 492 ----IDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVL 547
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ VG+ L G FV NSLIDMY +CG ++K F+ + +E +M
Sbjct: 548 K--------VGV-------LDDG-FVRNSLIDMYCKCGEMEKAS--VIFKHLPQESSMMN 589
Query: 350 AME----------QYCCMVDLLARAGQFDDTL 371
+ E + MV + G+F+D L
Sbjct: 590 SEESCDDAVVESVSWSSMVSGYVQNGRFEDAL 621
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 91/198 (45%), Gaps = 36/198 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ YAK + L+ AH F +I Q + SW +++G+A G ++ G
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLG----------- 373
Query: 248 EFFSRMIQTDMQPNTISLSGVLAAC-AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
F++M + PN +LS VL +C + V ++GK IHG++LR+
Sbjct: 374 -LFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRN--------------- 417
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
GL + + NS++D Y +C E + F +M E + M+ + G
Sbjct: 418 -GLDLDAVLNNSILDYYVKCRCFGYAE--KLFGLMA-----EKDTVSWNIMMSSYLQIGD 469
Query: 367 FDDTLNFMKKMPFEPSSA 384
+++ +++P + +++
Sbjct: 470 MQKSVDLFRQLPGKDAAS 487
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 168/644 (26%), Positives = 265/644 (41%), Gaps = 187/644 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
FE M ER+V SW M+ + G E + L + +GV AC+ L
Sbjct: 227 FEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSL 286
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-KDFSNLSL------- 163
GK ++ +I + + V +++++ KCG + A F +D +++S
Sbjct: 287 GWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGS 346
Query: 164 ----------------------------------------LKHGKEIHPHHLKKDDLESD 183
L G+++H LK +
Sbjct: 347 LQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRA- 405
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------F 230
++V+NSL+ YAKC L+ A FS + ++ +VSW +M+ Y+ G
Sbjct: 406 IVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMAT 465
Query: 231 REEIT------GFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKE 283
R IT + Q+G E L+ +S M+ Q D+ P+ ++ + CA + KLG +
Sbjct: 466 RNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQ 525
Query: 284 IHGYVLRHHIQLSTGVGIALISI----------QGL-----GTGSFVWNSLIDMYGRCGA 328
I G+ ++ + L+ V A I++ Q L G WN++I Y + G
Sbjct: 526 IIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGM 585
Query: 329 IQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
++ EG YF+MM + + + P +E +
Sbjct: 586 GKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFS 645
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG + + + KMP +P++ C N ++AE AA+H+FEL+
Sbjct: 646 CMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSP 705
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
SG KVH F A D SH
Sbjct: 706 DSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQ 765
Query: 423 VHKISEKLMRLYSEIKKIGYMKR---IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
V I K+ L +I +GY++ HSEKLA+AFG++S P+ ++KNLR+C
Sbjct: 766 VIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRIC 825
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GDCH+ K +S +RE ++ D RFHHF G+CSCGDYW
Sbjct: 826 GDCHTVIKLISSVT----DREFVIRDGVRFHHFKSGSCSCGDYW 865
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 119/293 (40%), Gaps = 64/293 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F++MP R+V SW ++M Y + + + F + G V K+C L
Sbjct: 93 LFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALG 152
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+ + F G+ V+ ++DMF++CG ++ AS F + +
Sbjct: 153 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIE------------ 200
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ NS++ YAK + A F + ++ +VSWN M+A
Sbjct: 201 -----------RPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA------ 243
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+Q G AL M + ++ ++ + + L ACA++ GK++H V+
Sbjct: 244 ------ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVI 297
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
R Q+ +V ++LI++Y +CG+ + E R F ++
Sbjct: 298 RSLPQIDP----------------YVASALIELYAKCGSFK--EAKRVFNSLQ 332
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L+ D E +++ +N +M+ YAK L A F ++ ++ + SWN +++GY F+
Sbjct: 62 LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGY----FQAR- 116
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ DG LE F M ++ D PN + V+ +C + +L ++ G +
Sbjct: 117 ----RFLDG---LETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDF 169
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
V A L+DM+ RCG +
Sbjct: 170 WGDPDVETA----------------LVDMFVRCGYV 189
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 174/639 (27%), Positives = 261/639 (40%), Gaps = 206/639 (32%)
Query: 43 QVHAHLIVCGVELCAF--------------------LGMFEKMPERNVFSWTSMMGMYNV 82
QVHAH+I G+ C++ L +F ++ N F WT+M+ Y +
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYAL 119
Query: 83 LGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
G E N + + +GV +S F +F
Sbjct: 120 QGLLSESTNFYTRMRRDGVGP------------------VSFTFSA----------LFKA 151
Query: 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
CG N+ L GK++H + SDL V NS++D Y KC +L
Sbjct: 152 CGAA------------LNMDL---GKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGC 196
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDG 243
A F ++ ++ +VSW ++ YA G E +TG+ Q G
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRP 256
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV--GI 301
+ ALE+F +M M+ + ++L+GV++ACAQ+ K I R S V G
Sbjct: 257 KEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGS 316
Query: 302 ALISIQGLGTGS----------------FVWNSLI---DMYGRCGA------------IQ 330
ALI + GS F ++S+I M+GR + I+
Sbjct: 317 ALIDMYS-KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375
Query: 331 KN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
N +G + F M+K + + P+ + Y CMVDLL RAG ++ L+
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
+K MP EP+ C NPDIA+ AA LF+LEP LS+
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGR 495
Query: 408 -----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
G++H F AGDT+H +I + L +L ++
Sbjct: 496 WEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLR 555
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY + + HSEKLALA+GL+ T G ++++KN+R+C DCH+
Sbjct: 556 SHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHN 615
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V A REII+ DN RFHHF +G CSCG++W
Sbjct: 616 ----VMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 167/643 (25%), Positives = 259/643 (40%), Gaps = 213/643 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLI--------------VCGVELCAFLG----MFEKMP 66
Y I C + G +VH H+I + C LG MF++MP
Sbjct: 93 YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
++NV SWT+M+ Y+ G+ E +NLF ++ + +C G+
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD---------------- 157
++ I +E + V +LDM+ K GR+ A G F E+D
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272
Query: 158 -----------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
S L+ L HGK++H H L+ +L+N
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLN- 331
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D Y+KC + A F + ++ +SWNAML G++++G LE
Sbjct: 332 SLIDMYSKCGNVCYARRIFDSMPERTCISWNAML------------VGYSKHGMAREVLE 379
Query: 249 FFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M + + ++P++I+ VL+ C+ + +G EI
Sbjct: 380 LFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEI----------------------- 416
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
++ M+ + +EP + Y C+VDLL RAG+
Sbjct: 417 -----------------------------FYNMVNGKDGIEPDIGHYGCVVDLLGRAGRV 447
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-------- 409
++ +F+KKMPF P++A C + +I + L ELEP ++G
Sbjct: 448 EEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLY 507
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH+F A D +H ++++K+ L
Sbjct: 508 ASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELS 567
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ K+ GY+ + GHSEKLALAFGLI+T G+ +RVIKNLR+C
Sbjct: 568 IKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICV 627
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VS R R +I+ D RFH+ V G CSCGDYW
Sbjct: 628 DCHSFAKFVS----RLYARTVILRDKNRFHNIVGGVCSCGDYW 666
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 31/172 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------------- 53
L + + + + +VTYA + L L G QVH+H++ G
Sbjct: 279 LFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYS 338
Query: 54 ---ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
+C +F+ MPER SW +M+ Y+ G E++ LF L+ +E
Sbjct: 339 KCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYL 398
Query: 100 GVYKACSELKDHRVGKDVYDYMISIK--FEGNACVKRPVLDMFIKCGRMEMA 149
V CS + +G +++ M++ K E + V+D+ + GR+E A
Sbjct: 399 AVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA 450
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 167/596 (28%), Positives = 261/596 (43%), Gaps = 157/596 (26%)
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVY 118
++ +W S++ + + G YE ++ F L G +A L +GK+++
Sbjct: 332 DIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIH 391
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL----SLLK--------H 166
Y++ K E + V ++D +IK ++ A F N+ SL+
Sbjct: 392 GYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFD 451
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHLVSWNAML 222
E + +K++ ++ DL+ NSL+ Y+ + A ++IK ++VSW AM
Sbjct: 452 NAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAM- 510
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I+G Q + AL+FFS+M + +++PN+ ++ +L ACA K+G+
Sbjct: 511 -----------ISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGE 559
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV---------------WNSLI---DMYG 324
EIH + +RH + ALI + G G V WN ++ +YG
Sbjct: 560 EIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYG 619
Query: 325 -----------------RCGAIQ--------KN-----EGWRYFEMMKKEYNMEPAMEQY 354
R AI KN +GW+YF+ MK +YN+ P +E Y
Sbjct: 620 HGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHY 679
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL +AG D+ L+F+ +P + ++ C + IAE AAR+L LEP
Sbjct: 680 SCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEP 739
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
+S +H F SH
Sbjct: 740 YNSANYALMMNIYSTFDRWGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHP 799
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
+I +L +L SEIKK+GY+ I H+EKLA+ +GL+ T G
Sbjct: 800 EEGEIYFELYQLISEIKKLGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGG 859
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SP+RV+KN R+C DCH+ KY+S A R REI + D RFHHF++G CSC D W
Sbjct: 860 SPIRVVKNTRICHDCHTTAKYISLA----RNREIFLRDGGRFHHFMNGECSCKDRW 911
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 89/404 (22%), Positives = 167/404 (41%), Gaps = 82/404 (20%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEK-------------MPE 67
++ + C L L LG++VHA L+ G + CA + ++EK P
Sbjct: 135 TVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPL 194
Query: 68 RNVFSWTSMMGMYNVLG-YYEEIVNLFYLL-------IDEGVYK---ACSELKDHRVGKD 116
+ F W +++ M N+ +E+ + LF + D + K AC +L+ GK
Sbjct: 195 QEDFLWNTIV-MANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ 253
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ Y+I N + ++ M+ + R+E+A F+ + N +
Sbjct: 254 IHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSA-------------S 300
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ + S VN+ L + + ++ + K +++WN++L+G+ L G E +
Sbjct: 301 WNSIISSYAVNDCLNGAWDLLQEMESSGVK------PDIITWNSLLSGHLLQGSYENV-- 352
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
L F + +P++ S++ L A + F LGKEIHGY++R ++
Sbjct: 353 ----------LTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYD 402
Query: 297 TGVGIAL----ISIQGLGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMM 341
V +L I L V WNSLI Y G E + M
Sbjct: 403 VYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAE--KLLNQM 460
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTL---NFMKKMPFEPS 382
K+E ++P + + +V + +G+ ++ L N +K + P+
Sbjct: 461 KEE-GIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPN 503
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 34/235 (14%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G E+H +K+ D+ ++ +L++ Y K + A+ F + + WN ++
Sbjct: 150 GMEVHACLVKRG-FHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIV---- 204
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ R E E ALE F RM + ++ +L AC +++ GK+IHG
Sbjct: 205 MANLRSE--------KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHG 256
Query: 287 YVLRHHIQLSTGVGIALISIQGLGT---------------GSFVWNSLIDMYGRCGAIQK 331
YV+R +T + +++S+ S WNS+I Y +
Sbjct: 257 YVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCL-- 314
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL-NF--MKKMPFEPSS 383
N W + M+ ++P + + ++ G +++ L NF ++ F+P S
Sbjct: 315 NGAWDLLQEMESS-GVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDS 368
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 159/637 (24%), Positives = 260/637 (40%), Gaps = 195/637 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F ++P F+ S++ Y + + + L++ +G+ +K+C L +
Sbjct: 96 VFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE 155
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG-------------------------- 144
GK ++ + + F +A ++ +++M+ CG
Sbjct: 156 ---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA 212
Query: 145 ---------------RMEMASGEFEEKDFSNLSL-------LKHGKEIHPHHLKKDDLES 182
RME+AS + E N+ L+ K++H ++ + +
Sbjct: 213 YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVH-KYIDETGIGF 271
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ ++LMD Y KC +A F+K+ +K+L WN M I G + D
Sbjct: 272 HTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIM------------INGHVEDSD 319
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E AL F+ M + ++ + ++++ +L AC + +LGK +H Y+ + I++ +G A
Sbjct: 320 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 379
Query: 303 LISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK--------------- 331
L+ + GS W +LI CG K
Sbjct: 380 LVDMYA-KCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKP 438
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
NEG YF M +Y ++P++E Y CMVD+L RAG+ + +
Sbjct: 439 DAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDL 498
Query: 374 MKKMPFEPSS------AEPC----NPDIAEHAARHLFELEPLSSGK-------------- 409
++ MP P C N +AE AA+ L EL+P + G
Sbjct: 499 IQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNW 558
Query: 410 -----------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
VH F+ GD SH +I E L + +K
Sbjct: 559 EAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSA 618
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ K HSEKLA+AFGL+ST+PG+P+RV+KNLR+C DCHS
Sbjct: 619 GYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAM 678
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++S+ REII+ D RFHHF G+CSC D+W
Sbjct: 679 KFISEV----YNREIIVRDRNRFHHFTKGSCSCRDFW 711
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 168/672 (25%), Positives = 276/672 (41%), Gaps = 209/672 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+H L++ G++ FL +F++ +VF W +++ Y+
Sbjct: 74 QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133
Query: 85 YYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
Y + V ++ + GV+ KAC+EL D + ++ +I F + V+
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KCG + +A F+
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP 253
Query: 156 ---------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
+ ++++ L+ G+ IH +K LE + + SL FYAKC + VA
Sbjct: 254 DWIALVSILRAYTDVDDLEQGRSIHGFVIKMG-LEDEPALLISLTAFYAKCGLVTVAKSF 312
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F ++K +++ WNAM++GYA G EE A+ F MI +++P+++++
Sbjct: 313 FDQMKTTNVIMWNAMISGYAKNGHAEE------------AVNLFHYMISRNIKPDSVTVR 360
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-LGTGSF----------- 314
+ A AQV +L + + YV + + V +LI + G+ F
Sbjct: 361 SAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK 420
Query: 315 ---VWNSLIDMYG----------------RCGAIQKN-----------------EGWRYF 338
+W+++I YG + G + EGW F
Sbjct: 421 DVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELF 480
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN---- 388
MK ++ + P E Y C+VDLL RAG + F+ K+P EP + C
Sbjct: 481 HCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRC 539
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
+ E+AA LF L+P ++G
Sbjct: 540 VTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIE 599
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGH 451
K+ +F GD SH + +I ++L RL +K++G++ K H
Sbjct: 600 INGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFH 659
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SE++A+A+GLIST+PG+ LR+ KNLR C +CHS K +SK EREII+ D RFHH
Sbjct: 660 SERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLV----EREIIVRDANRFHH 715
Query: 512 FVDGACSCGDYW 523
F DG CSCGDYW
Sbjct: 716 FKDGLCSCGDYW 727
>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
Length = 650
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 158/581 (27%), Positives = 237/581 (40%), Gaps = 181/581 (31%)
Query: 59 LGMFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
L +F++MPERNV +WT+++ + N G EE + + +GV +
Sbjct: 135 LRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGV------------APNA 182
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
Y + + G V + +K G
Sbjct: 183 YTFSSVLGACGTPGVLAALHASTVKVG--------------------------------- 209
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+SD+ V +SL+D Y K L F ++ + LV WN+++AG+A
Sbjct: 210 --LDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFA----------- 256
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH----- 292
Q GDG A+E F RM N +L+ VL AC + + G+++H +VL++
Sbjct: 257 -QSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYERDLIL 315
Query: 293 -----------------------------IQLSTGV-GIA-------------LISIQGL 309
I ST + G+A L+ +G+
Sbjct: 316 HNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGV 375
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ G ++ +GW YF MKK + ++P E + CMVDLL RAG+ D+
Sbjct: 376 APNRITMVGVLFACSHAGLVE--DGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDE 433
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK---------- 409
+ F++ M EP + C + ++A +AAR + +LEP G
Sbjct: 434 AVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYAD 493
Query: 410 ---------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSE 436
VH FIAGD SH I ++L RL
Sbjct: 494 LRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGR 553
Query: 437 IKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
I +GY+ + HSEK+A+AFG + G P+R++KNLR+CGDC
Sbjct: 554 ISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDC 613
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K VSK+E R II+ D RFHHF DGACSCGDYW
Sbjct: 614 HAFAKLVSKSEG----RMIIIRDPVRFHHFQDGACSCGDYW 650
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 38/161 (23%)
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V+NSL+ YAK L A F ++ ++++V+W ++A A G
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALA-----------NADGRK 163
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E AL F M + + PN + S VL AC + GV AL
Sbjct: 164 EEALRFLVAMWRDGVAPNAYTFSSVLGACG----------------------TPGVLAAL 201
Query: 304 ISIQ---GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+ GL + FV +SLID Y + G + + G R F+ M
Sbjct: 202 HASTVKVGLDSDVFVRSSLIDAYMKLGDL--DGGRRVFDEM 240
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C + LE G QVHAH++ +L C L +F +MP+
Sbjct: 282 TLTSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQ 341
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
R+V SW++M+ G E + +F L+ EGV
Sbjct: 342 RDVISWSTMISGLAQNGKSAEALRVFDLMKSEGV 375
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 246/588 (41%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKD 110
+FE MP+R++ SW +++ G +E+ + + + + V +E +
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 251
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME----------------------- 147
GK+++ Y I ++ + + ++DM+ KC R++
Sbjct: 252 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 311
Query: 148 -MASGEFEEK-----------------DFSN-------LSLLKHGKEIHPHHLKKDDLES 182
+ +G F+E FS+ L+ L GK++H + + + +
Sbjct: 312 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY-IIRSRFDG 370
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ + ++L+D YAKC ++ A F K++ +VSW AM+ GYAL +G
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYAL------------HGH 418
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A+ F RM ++PN ++ VL AC+
Sbjct: 419 AYDAISLFKRMEVEGVKPNYVAFMAVLTACSHA--------------------------- 451
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L+D E W+YF M ++Y + P +E Y + DLL
Sbjct: 452 ---------------GLVD-----------EAWKYFNSMTQDYRIIPGLEHYAAVADLLG 485
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
R G+ ++ F+ M EP+ + C N ++AE ++ LF ++P + G
Sbjct: 486 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVL 545
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
KVH+F+AGD SH +I+E
Sbjct: 546 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEA 605
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L ++++ GY+ KR C HSE+LA+ FG+IST G+ +RV KN
Sbjct: 606 LKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKN 665
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ TK++SK REI++ DN RFHHF DG CSCGD+W
Sbjct: 666 LRVCVDCHTATKFISKIVG----REIVVRDNSRFHHFKDGKCSCGDFW 709
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 70/372 (18%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+ + C + +L G VH +I G+ ++++ ++M MY+ E
Sbjct: 112 VLKSCTLMKDLRFGESVHGCIIRLGMGF-------------DLYTCNALMNMYSKFWSLE 158
Query: 88 EIVNLFYLLIDEG----VYKACSELKDHRVG-----------KDVYDYMISIKFEGNACV 132
E VN + + DEG VY E + + +G +D+ + I +
Sbjct: 159 E-VNTYKKVFDEGKTSDVYSK-KEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGM 216
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
L M + G ++ F F+ L GKEIH + ++ + ++D+ + +
Sbjct: 217 HEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIR-NGYDADVFIGS 275
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D YAKC + + F + Q +SWN+++AG G +E L+
Sbjct: 276 SLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE------------GLK 323
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
FF +M+ ++PN +S S ++ ACA + LGK++HGY++R +
Sbjct: 324 FFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV----------- 372
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
F+ ++L+DMY +CG I + W + +M + Y+ M + M+ A G
Sbjct: 373 -----FIASALVDMYAKCGNI-RTARWIFDKM--ELYD----MVSWTAMIMGYALHGHAY 420
Query: 369 DTLNFMKKMPFE 380
D ++ K+M E
Sbjct: 421 DAISLFKRMEVE 432
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/185 (17%), Positives = 78/185 (42%), Gaps = 38/185 (20%)
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
L+ +N++ + ++ I +T +G +L FF +M+ + P+ VL +C
Sbjct: 59 LLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTL 118
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+K + G+ +HG ++R G+G + N+L++MY + ++++
Sbjct: 119 MKDLRFGESVHGCIIR----------------LGMGFDLYTCNALMNMYSKFWSLEEVNT 162
Query: 335 WR--------------------YFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLN 372
++ Y ++K + M P + + ++ A+ G +D L
Sbjct: 163 YKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALM 222
Query: 373 FMKKM 377
+++M
Sbjct: 223 MVREM 227
>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
Length = 652
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 173/633 (27%), Positives = 267/633 (42%), Gaps = 164/633 (25%)
Query: 8 LLLQSMDLTNPDE---------CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF 58
+LLQ + NP E CT + R +L L GI+ + + V L
Sbjct: 67 MLLQGI---NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGK 123
Query: 59 LG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------- 101
LG +F +M R+V +W++M+ Y G+ E + LF + +GV
Sbjct: 124 LGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSG 183
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF 158
AC+ L D R G ++ + + + V +++++ KCGR+E A+ G+ EK+
Sbjct: 184 LDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNV 243
Query: 159 ---------------------------------------------SNLSLLKHGKEIHPH 173
+ ++ LK G+ IH
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHER 303
Query: 174 -HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
H+ LESD+ V +L++ Y+KC L +A F KI LV WN+++A A
Sbjct: 304 IHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNA------ 357
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q+G E ALE F RM +QP I+ + VL AC+ G R H
Sbjct: 358 ------QHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQG--------RKH 403
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-------------GWRYFE 339
++ I G+ + + ++D+ GR G I +E W F
Sbjct: 404 F-------VSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFL 456
Query: 340 MMKKEY-NMEPAM--------------EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ Y NM+ A+ Y + ++ A+AG++ D + M +
Sbjct: 457 GACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVK 516
Query: 385 EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-- 442
E A R E++ +VH FI+GD H + +I +L RL +K GY
Sbjct: 517 E---------AGRSWIEVKD----RVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYVP 563
Query: 443 ------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
+K HSEKLA+AF L++T GSP+RV+KNLR+C DCH+ +K++S
Sbjct: 564 DTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFIS 623
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI++ D RFH F +GACSCGDYW
Sbjct: 624 KLVN----REIVVRDCNRFHRFQNGACSCGDYW 652
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 101/275 (36%), Gaps = 50/275 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L+D Y KC A F I+ K++ SW MLA +A + D +
Sbjct: 14 NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFA------------ENRDFDRCW 61
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
FF M+ + P + +S L+AC + +G+ I +L G GI SI
Sbjct: 62 LFFRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAIL--------GTGIEEESI- 112
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
V +L+ +YG+ G + + M ++ + + MV AR G
Sbjct: 113 -------VQTALVSLYGKLGHC-TDAASVFLRMSHRD------VVAWSAMVAAYARNGHP 158
Query: 368 DDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKIS 427
+ L ++M + + A L +L S +H + S V +
Sbjct: 159 REALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR--SGALMHQRVEAQGIQSGV-VVG 215
Query: 428 EKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLI 462
L+ LY + CG E A AFG I
Sbjct: 216 TALVNLYGK------------CGRIEAAAEAFGQI 238
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 159/558 (28%), Positives = 240/558 (43%), Gaps = 172/558 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYE-EIVNLFYLLIDEGV----------YKACSELK 109
+FE+MPE NV SWT+++ Y G + E + LF +I V Y ++
Sbjct: 17 VFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSLISMYARSGRME 76
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------KDFSNL 161
D R D+ FE N ++D + K + E A F E F+
Sbjct: 77 DARKAFDIL-------FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFA 129
Query: 162 SLLK---------HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
SLL G++IH L K +S+ + N+L+ Y++C ++ A F++++
Sbjct: 130 SLLSGAASIGAMGKGEQIHGR-LLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 188
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++++SW +M ITGF ++G ALE F +M++T +PN I+ VL+AC
Sbjct: 189 RNVISWTSM------------ITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 236
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+ + +IS
Sbjct: 237 SH--------------------------VGMIS--------------------------- 243
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EP 386
EG ++F M KE+ + P ME Y CMVDLL R+G + + F+ MP +
Sbjct: 244 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 303
Query: 387 C----NPDIAEHAARHLFELEP-------------LSSG--------------------- 408
C N ++ HAA + E EP S+G
Sbjct: 304 CRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEA 363
Query: 409 ---------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
+VH F G+TSH +I ++L +L S+IK++GY+ K
Sbjct: 364 GCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKE 423
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEK+A+AFGLISTS P+R+ KNLR+CGDCH+ KY+S A REI++ D
Sbjct: 424 QFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATG----REIVVRD 479
Query: 506 NYRFHHFVDGACSCGDYW 523
+ RFHH +G CSC DYW
Sbjct: 480 SNRFHHIKNGVCSCNDYW 497
>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
Length = 639
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 161/581 (27%), Positives = 239/581 (41%), Gaps = 181/581 (31%)
Query: 59 LGMFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
L MF+ MP RNV +WT+++ + + G +E + + +GV +
Sbjct: 124 LRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGV------------APNA 171
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
Y + + AC +L + S +K G
Sbjct: 172 YTFSSVL----GACTTPGMLTAV-------------------HASTVKAG---------- 198
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+SD+ V +SL+D Y K L F ++ + LV WN+++AG+A
Sbjct: 199 --LDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFA----------- 245
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH----- 292
Q GDG A+E F RM N +L+ VL AC + + G+++H +VL++
Sbjct: 246 -QSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDLIL 304
Query: 293 -----------------------------IQLSTGV-GIA-------------LISIQGL 309
I ST V G+A L+ QG+
Sbjct: 305 HNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGV 364
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ G ++ +GW YF MK+ + ++P E + CMVDLL RAG+ D+
Sbjct: 365 APNHVTMVGVLFACSHAGLVE--DGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDE 422
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------- 408
+ F+ M EP S C N +A +AAR + +LEP G
Sbjct: 423 AVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYAD 482
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+VH FIAGD SH I ++L RL
Sbjct: 483 LRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGR 542
Query: 437 IKKIGY-------MKRIPACG-------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
IK +GY ++ +P HSEK+A+ FG + G P+R++KNLR+CGDC
Sbjct: 543 IKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDC 602
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K VSK+E R I++ D RFHHF DGACSCGDYW
Sbjct: 603 HAFAKLVSKSEG----RVIVIRDPVRFHHFQDGACSCGDYW 639
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 73/180 (40%), Gaps = 36/180 (20%)
Query: 166 HGKEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
HG+ IH H L D L V+NSL YAK L A F + +++V+W +
Sbjct: 82 HGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTV 141
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+A A + G + AL F M + + PN + S VL AC +
Sbjct: 142 VAALA-----------SADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTP---GML 187
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+H ++ GL + FV +SLID Y + G + + G R F+ M
Sbjct: 188 TAVHASTVK----------------AGLDSDVFVRSSLIDAYVKLGDL--DGGRRVFDEM 229
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C + LE G QVHAH++ +L C L +F +MP+
Sbjct: 271 TLTSVLRACTGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQ 330
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
R+V SW++M+ G E + +F L+ +GV
Sbjct: 331 RDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGV 364
>gi|356515240|ref|XP_003526309.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 560
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 162/567 (28%), Positives = 244/567 (43%), Gaps = 131/567 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD TY + + C L E+G +VHA ++V G+E ++G
Sbjct: 64 PD--NFTYPFVLKACGDLLLREIGRKVHALVVVGGLEEDVYVGNSILSMYFTFGDVAAAR 121
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
MF+KMP R++ SW +MM + G + R +V+
Sbjct: 122 VMFDKMPVRDLTSWNTMMSGFVKNG-------------------------EARGAFEVFG 156
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-- 177
M F G+ +L + CG ++ LK G+EIH + ++
Sbjct: 157 DMRRDGFVGDGIT---LLALLSACG---------------DVMDLKAGREIHGYVVRNGG 198
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ + + NS++ Y C + A F ++ K +VSWN++++GY
Sbjct: 199 NRRLCNGFLMNSIICMYCNCESMSFARKLFEGLRVKDVVSWNSLISGY------------ 246
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH------ 291
+ GD LE F RM+ P+ ++++ VL AC Q+ +LG + YV++
Sbjct: 247 EKCGDAFLVLELFGRMVVVGAVPDEVTVTSVLGACNQISALRLGASVQSYVVKRVFDEMP 306
Query: 292 -HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
I + V + I G G + + +M G+ + +EG +
Sbjct: 307 EKILAACTVMVTGFGIHGRGREAI--SIFYEMLGK--GVTSDEG-----IFTARLQRGAR 357
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLF 400
Y C+VDLL RAG + ++ M +P+ C N +A +A+ LF
Sbjct: 358 ATHYSCLVDLLGRAGYLAEAYGVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLF 417
Query: 401 ELEP--------LSSGK--VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-------- 442
EL P LS+ + VH F GDTSH I KL L ++KK GY
Sbjct: 418 ELNPDGVSSYVCLSNTEMMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVL 477
Query: 443 ------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
+K HSE+LALAF LI+T PG+ +R+ KNL +CGDCH+ K +S R
Sbjct: 478 YDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLCVCGDCHTVIKMIS----RL 533
Query: 497 REREIIMIDNYRFHHFVDGACSCGDYW 523
REIIM D RFHHF DG CSCG YW
Sbjct: 534 TNREIIMRDICRFHHFRDGLCSCGGYW 560
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N + + C ++ A F +I K+ WN+M+ GYA A
Sbjct: 3 NFTPITLQPACGHMPYAQHIFHQIVLKNSFLWNSMIRGYACNN------------SPSKA 50
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L + M+ +P+ + VL AC + ++G+++H AL+ +
Sbjct: 51 LILYREMLHFGHKPDNFTYPFVLKACGDLLLREIGRKVH----------------ALVVV 94
Query: 307 QGLGTGSFVWNSLIDMY 323
GL +V NS++ MY
Sbjct: 95 GGLEEDVYVGNSILSMY 111
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 173/702 (24%), Positives = 278/702 (39%), Gaps = 217/702 (30%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAF 58
+PD V+ A + + +++ QVH+H+I G + L
Sbjct: 195 DPDH--VSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLA 252
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F +PER+ ++ +++ Y+ G+ E +NLF+ + + G + A +L
Sbjct: 253 FQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQL 312
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS------------------ 150
D G+ V+ +++ F N V +LD + K R+ AS
Sbjct: 313 DDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLV 372
Query: 151 ---------------------GEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDL 180
F+ ++F +LL G++IH + D +
Sbjct: 373 TCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAI 432
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S++LV NSL+D YAKC A+ FS + + V W AM++ Y G E+
Sbjct: 433 -SEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHED------- 484
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L+ F M + + + + + ++ ACA + LGK++H +++ + G
Sbjct: 485 -----GLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSG 539
Query: 301 IALISIQG-LGT--------------GSFVWNSLIDMYGR-------------------- 325
AL+ + G+ S WN+LI Y +
Sbjct: 540 SALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQ 599
Query: 326 ---------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG ++ EG +YF+ M + Y + P E Y +D+L R G+FD+
Sbjct: 600 PDSVSLLSILCACSHCGLVE--EGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEA 657
Query: 371 LNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG------------ 408
M +MPFEP S C N ++A+ AA LF ++ L
Sbjct: 658 EKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAA 717
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
K H F A D +H + +I +KL L +
Sbjct: 718 AGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEK 777
Query: 437 IKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+ K GY K +C HSE++A+AF LIST GSP+ V+KNLR C D
Sbjct: 778 MVKKGY-KPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTD 836
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K +SK + REI + D+ RFHHF DG C+C DYW
Sbjct: 837 CHAAIKVISKIVR----REITVRDSSRFHHFRDGFCTCRDYW 874
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 60/325 (18%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP +N+FS +M ++GY I G L D + +
Sbjct: 123 LFDEMPHKNIFSTNTM-----IMGY-----------IKSGNLSEARTLFDSMFQRTAVTW 166
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLK 176
+ I R +FI+ GR + F+ + +++H H +K
Sbjct: 167 TMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIK 226
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+S L+V+NSL+D Y K R L +A F+ I ++ V++NA+L GY+ GF E
Sbjct: 227 LG-YDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNRE--- 282
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A+ F +M + +P + + +L A Q+ + G+++HG+V++ + +
Sbjct: 283 ---------AINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWN 333
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QY 354
FV N+L+D Y + R E K Y M P ++ Y
Sbjct: 334 V----------------FVANALLDFYSKHD--------RVVEASKLFYEM-PEVDGISY 368
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPF 379
+V A G+ ++L K++ F
Sbjct: 369 NVLVTCYAWNGRVKESLELFKELQF 393
>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
Length = 616
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 165/634 (26%), Positives = 256/634 (40%), Gaps = 194/634 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ + C L ++E+G Q+H + G+ F+G +FE+M
Sbjct: 43 AFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEM 102
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P ++ SWT+M+ Y+ +G +EE + F +IDE V
Sbjct: 103 PCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEV------------------------ 138
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+D + C + L K G+ +H +K ESD+
Sbjct: 139 ----------TIDQHVLCSTLGACGA---------LKACKFGRSVHSSVVKLG-FESDIF 178
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V N+L D Y+K ++ A F + +++VS+ ++ GY E+I E
Sbjct: 179 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVE---TEQI---------E 226
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
L F + + ++PN + S ++ ACA + G ++H V++ + V L+
Sbjct: 227 KGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILV 286
Query: 305 SIQG--------------LGTGS-FVWNSLIDMYGRCG---------------AIQKN-- 332
+ G +G + WNSL+ ++G+ G ++ N
Sbjct: 287 DMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAI 346
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG YF M K Y + P E Y C++DLL RAG+ + F+ +
Sbjct: 347 TFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINR 406
Query: 377 MPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG------------------ 408
MPFEP++ C + ++ + AA L +LEP +SG
Sbjct: 407 MPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDV 466
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
K H F A D SH I EKL L +IK GY+
Sbjct: 467 RSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYV 526
Query: 444 KRIPACG--------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
R + HSE++A+AF LIS G P+ V KNLR+C DCHS K++
Sbjct: 527 PRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFI 586
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK R+II+ DN RFHHF DG+CSCGDYW
Sbjct: 587 SKVTG----RKIIVRDNSRFHHFTDGSCSCGDYW 616
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 39/170 (22%)
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ Q++LVSW AM I+G +Q A+ F M P + S +
Sbjct: 1 MPQRNLVSWTAM------------ISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAI 48
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
ACA + ++GK++H L+ G+G+ FV ++L DMY +CGA+
Sbjct: 49 RACASLGSIEMGKQMHCLALKF----------------GIGSELFVGSNLEDMYSKCGAM 92
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQ--YCCMVDLLARAGQFDDTLNFMKKM 377
+ + FE M P ++ + M+D ++ G+F++ L KKM
Sbjct: 93 --FDACKVFEEM-------PCKDEVSWTAMIDGYSKIGEFEEALLAFKKM 133
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 165/599 (27%), Positives = 257/599 (42%), Gaps = 184/599 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F K+ E+++ SW SM+ + G EE + LF + E + +RV
Sbjct: 188 VFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENA-------RPNRVT------ 234
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+ + +AC KR L+ GR +++++ +
Sbjct: 235 MVGVL---SACAKRIDLEF----GRWAC------------------------DYIERNGI 263
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGF--------- 230
+ +L+++N+++D Y KC L+ A F K+++K +VSW M+ GYA +G +
Sbjct: 264 DINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDV 323
Query: 231 --REEITG-------FTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKL 280
RE+IT + Q G + AL F + + + +PN ++L+ LAACAQ+ L
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISI--------QGLGT-------GSFVWNSLI----- 320
G IH Y+ + I+L+ + +LI + + L FVW+++I
Sbjct: 384 GGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAM 443
Query: 321 --------DMYGR-----------------CGAIQK---NEGWRYFEMMKKEYNMEPAME 352
D++ + C +EG +F M+ Y + P +
Sbjct: 444 HGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSK 503
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVD+L RAG ++ + ++KMP PS++ C N ++AE A L E
Sbjct: 504 HYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET 563
Query: 403 --------------------------------------EPLSS-----GKVHSFIAGDTS 419
EP S G +H F+ GD S
Sbjct: 564 DSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNS 623
Query: 420 HSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFGLIST 464
H L +I KL + + IK GY MK HSEKLA+A+GLI
Sbjct: 624 HPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRM 683
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P P+R++KNLR+CGDCHS K +SK R+I++ D YRFHHF G CSC DYW
Sbjct: 684 EPSQPIRIVKNLRVCGDCHSVAKLISKL----YNRDILLRDRYRFHHFSGGNCSCMDYW 738
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 36/232 (15%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K + +S L G+ IH +K SDL ++NSL+ FY+ L A+ FSKI +
Sbjct: 136 FVIKAATEVSSLLAGQAIHGMVMKAS-FGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVE 194
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K +VSWN+M I+GF Q G E AL+ F RM + +PN +++ GVL+AC
Sbjct: 195 KDIVSWNSM------------ISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSAC 242
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
A+ + G+ Y+ R+ G+ I LI + N+++DMY +CG+++
Sbjct: 243 AKRIDLEFGRWACDYIERN------GIDINLI----------LSNAMLDMYVKCGSLE-- 284
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ R F+ M+ E + + M+D A+ G +D MP E +A
Sbjct: 285 DARRLFDKME-----EKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITA 331
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 43/221 (19%)
Query: 165 KHGKEIHPHHLKK----DDLESDLLVNNSLMDFYAKCRYLKVAHCK-FSKIKQKHLVSWN 219
KH K++H H L+ D + L + + Y CK F +I + +L +WN
Sbjct: 44 KHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYA----CKVFDQIPRPNLYTWN 99
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
++ +A + I G L F + ++ PN+ + V+ A +V
Sbjct: 100 TLIRAFA--SSPKPIQGL---------LVFIQMLHESQRFPNSYTFPFVIKAATEVSSLL 148
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
G+ IHG V++ G+ F+ NSLI Y G + + + F
Sbjct: 149 AGQAIHGMVMK----------------ASFGSDLFISNSLIHFYSSLGDL--DSAYLVFS 190
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ +E + + M+ + G ++ L K+M E
Sbjct: 191 KI-----VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKME 226
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 277/664 (41%), Gaps = 179/664 (26%)
Query: 16 TNPDE---------CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA---FLGMFE 63
+PDE C T +L L L +V A L+ C L + L +F
Sbjct: 25 ASPDESHFISLIHACKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFR 84
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
ERN F +++ +E V F L++ GV K+ S+L +
Sbjct: 85 NSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWL 144
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G+ ++ + + ++ V+ ++DM+ K G+++ A FEE P
Sbjct: 145 GRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEES---------------PD 189
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---- 229
+KK+ + L+ N L++ Y + + + +A F + +++ SW+ ++ GY G
Sbjct: 190 RIKKESI----LIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNR 245
Query: 230 ---------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ I GF+Q GD ETA+ + M++ ++PN +++ VL+AC++
Sbjct: 246 AKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSK 305
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSL 319
G IHGY+L + I+L +G AL+ + L + V W ++
Sbjct: 306 SGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAM 365
Query: 320 IDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKKEYN 346
I + G AIQ + G +F+ M+ +Y
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYA 425
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAA 396
+EP ++ Y +VDLL RAG+ ++ ++ MP P C AE +
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVS 485
Query: 397 RHLFELEP--------------------------LS-----------------SGKVHSF 413
++L EL+P LS G+++ F
Sbjct: 486 QNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKF 545
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
AGD SH L +I KL + S + GY K HSEKLAL
Sbjct: 546 SAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTL 605
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
G + T+PG+ +R+IKNLR+CGDCHS KYVSK +R+I++ D +FHHF DG CSC
Sbjct: 606 GFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKIS----QRDILLRDARQFHHFKDGRCSC 661
Query: 520 GDYW 523
GDYW
Sbjct: 662 GDYW 665
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 176/645 (27%), Positives = 253/645 (39%), Gaps = 193/645 (29%)
Query: 12 SMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHA------------------HLIVCG 52
S+D P T Y + Q C L G Q+HA HL
Sbjct: 36 SVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVS 95
Query: 53 VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
L +F+K+P++N+F W ++ Y G ++ + L++ ++D G+
Sbjct: 96 NSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGL----------- 144
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
RP D F + F K S LS + G+ IH
Sbjct: 145 ---------------------RP--DNF---------TLPFVLKACSALSAIGEGRSIH- 171
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
++ K E DL V +L+D YAKC + A F KI + V WN+MLA YA G +
Sbjct: 172 EYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPD 231
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
E ++ M ++P +L V+++ A V G+EIHG+ RH
Sbjct: 232 E------------SISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHG 279
Query: 293 IQLSTGVGIALISIQGLGTGSFV---------------WNSLIDMYG----RCGAIQK-- 331
Q + V ALI + V WN++I Y GA+
Sbjct: 280 FQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFD 339
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG + +M ++Y + P ++ Y CM+DLL G
Sbjct: 340 KMRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCG 399
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------- 408
Q D+ + ++ M +P S C N ++AE A L ELEP SG
Sbjct: 400 QLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILAN 459
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
KV++F+AGD SHS I +L R
Sbjct: 460 MYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKR 519
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L + + GY K C HSE+LA+AFGLISTSPG+ L + KNLR+
Sbjct: 520 LEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRI 579
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH K++SK EREI + D R+H F G CSCGD+W
Sbjct: 580 CEDCHVAIKFISKI----MEREITVRDVNRYHSFKHGMCSCGDHW 620
>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
Length = 736
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 156/637 (24%), Positives = 267/637 (41%), Gaps = 192/637 (30%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID---EGVYK----------ACSEL 108
F++M ++ + +W +++ Y+ G + + ++ ++ EG+ AC+ +
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF------- 158
D G+++ ++ + ++ V+ +++M+ KCG +E A F+ +D
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236
Query: 159 --------------------------------------SNLSLLKHGKEIHPHHLKKDDL 180
+NL L+ G+ IH +++D
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH-RKVREDGY 295
Query: 181 ESDLLVNNSLMDFYAKCRY-LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
ESDL++ N L++ Y KC L+ A F +++ + +++WN ++ Y Q
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAY------------VQ 343
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
YG + AL+ F +M ++ PN I+LS VL+ACA + + GK +H + + +
Sbjct: 344 YGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL 403
Query: 300 GIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQK------------- 331
+L+++ + S V W++LI Y + G +
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGL 463
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
EG + F M ++ + P + CMVDLL+RAG+ +
Sbjct: 464 AADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAE 523
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------------LSS 407
N + MPF P + C + A A LFELE +
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583
Query: 408 GK---------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
G+ VH F+AGD SH I+ ++ RL ++K
Sbjct: 584 GRWDDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDA 643
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ K C HSEKLA+A+GLIST PG+PL ++KNLR C DCH+
Sbjct: 644 GYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAA 703
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++S R R+I++ D+ RFHHF +G+CSC DYW
Sbjct: 704 KFIS----RIVGRKIVVRDSTRFHHFENGSCSCKDYW 736
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 83/335 (24%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG + L +F + N SWT ++ + G+Y E + + ++ EG+
Sbjct: 5 CG-SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL--------- 54
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RP MF+ + +S + LK G+ +
Sbjct: 55 -----------------------RPDGAMFVVAIGVCSSSKD-----------LKQGQLL 80
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L+ LE D+++ +L+ YA+CR L++A F ++ +K LV+WNA++AGY
Sbjct: 81 HAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGY----- 135
Query: 231 REEITGFTQYGDGETALEFFSRMIQTD---MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
++ GD AL+ + M+ M+P+ I+ S L AC V G+EI
Sbjct: 136 -------SRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEAR 188
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+ G + S V N+LI+MY +CG+++ + F+ +K +
Sbjct: 189 TV----------------ASGYASDSIVQNALINMYSKCGSLESAR--KVFDRLKNRDVI 230
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEP 381
+ M+ A+ G L ++M P +P
Sbjct: 231 -----AWNTMISGYAKQGAATQALELFQRMGPNDP 260
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 81/197 (41%), Gaps = 32/197 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIV--------- 50
L Q M +P VT+ + C L +LE G +H + L++
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYT 310
Query: 51 -CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------- 101
C L +FE+M R+V +W ++ Y G ++ +++F + E V
Sbjct: 311 KCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370
Query: 102 --YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEK 156
AC+ L R GK V+ + S + + + ++ +++M+ +CG ++ G F +K
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK 430
Query: 157 DFSNLSLLKHGKEIHPH 173
+ S L H H
Sbjct: 431 SLVSWSTLIAAYAQHGH 447
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y KC + A F I+ + VSW ++A +A G E AL ++ R
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYRE------------ALGYYRR 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQG--- 308
M+ ++P+ + C+ K K G+ +H +L ++ +G ALI++
Sbjct: 49 MVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCR 108
Query: 309 -----------LGTGSFV-WNSLIDMYGRCG 327
+G + V WN+LI Y R G
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNG 139
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 162/615 (26%), Positives = 264/615 (42%), Gaps = 156/615 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDH 111
+F+++ R++ W +++ Y + + + LF+ L+ E V K C+ L
Sbjct: 69 IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVV 128
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG- 167
+ GK ++ + I F + V+ +++M+ KCG ++ A F+ +KD + L G
Sbjct: 129 QEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGY 188
Query: 168 ---KEIH-PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
EI L ++ E D L+D +KC ++ A F ++ ++LVSWNAM+
Sbjct: 189 ARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMIN 248
Query: 224 GYALGG-------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
GY G + I G+ G A++ F M++ +P+ +
Sbjct: 249 GYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHAT 308
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS------------------- 305
L VL+A + + G+ IH Y+ ++ +L +G +LI
Sbjct: 309 LVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQ 368
Query: 306 ----------IQGLGTGSFVWNSLIDMYGRCGAIQK-------------------NEGWR 336
I GLG ++L C K ++G +
Sbjct: 369 KKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQ 428
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----------SAEP 386
YF+MM EY +EP +E Y C+VD+L RAG ++ N ++ MP P+ S
Sbjct: 429 YFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNH 488
Query: 387 CNPDIAEHAARHLFELEPLS---------------------------------------- 406
DI E+AA+ + E+ P +
Sbjct: 489 GKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSS 548
Query: 407 ---SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---KRIPAC----------- 449
G +H FI GD SH +I K+ + ++K +G++ ++ C
Sbjct: 549 VEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAEL 608
Query: 450 -GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HSE+LA+AFGLI+ PG P+R++KNLR+C DCHS TK +SK REII+ DN R
Sbjct: 609 ENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKI----YSREIIVRDNCR 664
Query: 509 FHHFVDGACSCGDYW 523
FHHF +G+CSC DYW
Sbjct: 665 FHHFKNGSCSCMDYW 679
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 179/692 (25%), Positives = 284/692 (41%), Gaps = 207/692 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM----------- 61
PD T+ + + C + NL G ++H H+I G E + A + M
Sbjct: 205 PD--VYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR 262
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELK 109
F+KMP R+ SW +M+ Y G E + LF ++I V AC L
Sbjct: 263 LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLG 322
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKH 166
D R+G+ ++ Y++ +F + + ++ M+ G +E A F E +D + + +
Sbjct: 323 DDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMIS 382
Query: 167 GKE-------------------IHPHHL-------------------------KKDDLES 182
G E I P + K+ L S
Sbjct: 383 GYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVS 442
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+V NSL+D YAKC+ + A F +K++VSW +++ G + E
Sbjct: 443 YSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFE--------- 493
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL FF MI+ ++PN+++L VL+ACA++ GKEIH + LR + + A
Sbjct: 494 ---ALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNA 549
Query: 303 LISI------------QGLGTGSFV--WNSLIDMYGRCGA-----------IQKN----- 332
++ + Q V WN L+ Y G ++ N
Sbjct: 550 ILDMYVRCGRMEYAWKQFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNE 609
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG YF MK +Y++ P ++ Y C+VDLL R+G+ ++ F++
Sbjct: 610 VTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQ 669
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------- 406
KMP +P A C + ++ E AA ++F+ + S
Sbjct: 670 KMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDK 729
Query: 407 ------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG- 441
G VH+F++ D H + +I+ L R Y ++K+ G
Sbjct: 730 VAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGV 789
Query: 442 ------YMKRIPA------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+M + A CGHSE+LA+ FGLI++ PG P+ V KNL MC CH+ K++
Sbjct: 790 EGPESSHMDIMEASKADIFCGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFI 849
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
S RE REI + D +FHHF G CSC D
Sbjct: 850 S----REVRREISVRDAEQFHHFKGGICSCTD 877
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 119/273 (43%), Gaps = 72/273 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F +M +RN+FSW ++G Y G ++E ++L++ ++ GV DVY +
Sbjct: 163 VFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGV------------KPDVYTF 210
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
CV R CG M L G+EIH H ++
Sbjct: 211 ---------PCVLR-------TCGGMPN---------------LVRGREIHVHVIRYG-F 238
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
ESD+ V N+L+ Y KC + A F K+ + +SWNAM++GY G E
Sbjct: 239 ESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLE------- 291
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L F MI+ + P+ ++++ V+ AC + +LG++IHGYVLR
Sbjct: 292 -----GLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTE-------- 338
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G + NSLI MY G I++ E
Sbjct: 339 --------FGRDPSIHNSLIPMYSSVGLIEEAE 363
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 30/183 (16%)
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L + N+L+ + + L A F ++++++L SWN ++ GYA G +E
Sbjct: 141 LQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDE---------- 190
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ + RM+ ++P+ + VL C + G+EIH +V+R+ + V AL
Sbjct: 191 --ALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNAL 248
Query: 304 ISIQ----GLGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
I++ + T V WN++I Y G EG R F MM K Y ++
Sbjct: 249 ITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCL--EGLRLFGMMIK-YPVD 305
Query: 349 PAM 351
P +
Sbjct: 306 PDL 308
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 173/654 (26%), Positives = 268/654 (40%), Gaps = 209/654 (31%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------------MFEKMPE 67
+ C +N ++ QVHAH+ G+E C F+ +F+++
Sbjct: 45 VLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
N F WT+++ Y + G + E V L+ + ++ +G + + +K
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLY------------NSMRRQGIGPVSFTFTALLK-- 147
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
AC LD+ NL G+++H + SDL V
Sbjct: 148 --AC--SAALDV--------------------NL-----GRQVHTQTILIGGFGSDLYVG 178
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------- 233
N+L+D Y KC L H F ++ + ++SW +++ YA G E
Sbjct: 179 NTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMV 238
Query: 234 -----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+TG+ Q ALE F RM ++ + ++L GV++ACAQ+ K +
Sbjct: 239 AWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVA 298
Query: 289 LRHHIQLSTGV--GIALISIQGLGTGS----------------FVWNSLI---DMYGRCG 327
+ ++ V G ALI + GS + ++S+I M+G G
Sbjct: 299 EQSGFGPTSNVVVGSALIDMYA-KCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357
Query: 328 A------------IQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCM 357
A I+ N +G + F MM++ + + P+ + Y CM
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACM 417
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--- 404
VDLL RAG+ ++ LN +K MP P C NPD+A+ AA HLFELEP
Sbjct: 418 VDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGI 477
Query: 405 ----------LSSGK-------------------------------VHSFIAGDTSHSLV 423
S+G+ +H F AGD SH
Sbjct: 478 GNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKS 537
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPACG--------------HSEKLALAFGLISTSPGSP 469
+I + L L +K +GY + + HSEKLALAFGL++T+ G
Sbjct: 538 REIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCT 597
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R++KNLR+C DCHS V + REI++ DN RFHHF DG CSCG++W
Sbjct: 598 IRIVKNLRICEDCHS----VMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 177/718 (24%), Positives = 283/718 (39%), Gaps = 221/718 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ T+ + C K+ L G+QVH ++ G+E F+
Sbjct: 128 PDK--YTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGR 185
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F+ M ERNV SWTS++ Y+ +E V+LF+ + + GV AC++LK
Sbjct: 186 KLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLK 245
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------ 163
D +GK V Y+ + E + + ++DM++KCG + A F+E NL +
Sbjct: 246 DLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMS 305
Query: 164 ------------------------------------------LKHGKEIHPHHLKKDDLE 181
L GK H + L+ + LE
Sbjct: 306 NYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLR-NGLE 364
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------ 229
++N+++D Y KC + A F + K +V+WN+++AG G
Sbjct: 365 GWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEM 424
Query: 230 -------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ I Q E A+E F M + + +++ G+ +AC + L K
Sbjct: 425 LERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAK 484
Query: 283 EIHGYVLRHHIQLSTGVGIALISI------------------------------------ 306
+ Y+ ++ I + +G AL+ +
Sbjct: 485 WVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEG 544
Query: 307 --------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
Q + V+ +L+ G++ ++G + F M+K + + P +
Sbjct: 545 NTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSV--DQGRQLFWSMEKAHGIRPHIV 602
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y CMVDLL RAG ++ ++ ++ MP EP+ C N ++A +AA L +L
Sbjct: 603 HYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQL 662
Query: 403 EP-------------LSSGK------------------------------VHSFIAGDTS 419
P S+GK +H F +GD S
Sbjct: 663 APERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDES 722
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H+ I L + + + GY+ K HSEKLA+A+GLI+T
Sbjct: 723 HAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTG 782
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+RV+KNLRMC DCHS K VSK REI + DN R+H F +G CSC DYW
Sbjct: 783 QGIPIRVVKNLRMCSDCHSFAKLVSKL----YNREITVRDNNRYHFFKEGFCSCRDYW 836
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G+ G G+ A+ + +M+ + P+ + +L+AC+++ G ++HG VL+
Sbjct: 102 IRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLK--- 158
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
GL FV NSLI Y CG + + G + F+ M
Sbjct: 159 -------------MGLEGDIFVSNSLIHFYAECGKV--DLGRKLFDGM 191
>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
Length = 673
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 158/618 (25%), Positives = 257/618 (41%), Gaps = 173/618 (27%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA----------CSELKDH 111
F+++P +NV SW SM+ N G++ + ++ + EGV + CS L+D
Sbjct: 71 FDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRDL 130
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------------- 158
GK ++D + + F+ V +++M+ KC R+++A FE D
Sbjct: 131 EQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSWNSMIAAH 190
Query: 159 -----SNLSLLKHGKEIHPHHLK-------------------------KDD-----LESD 183
S+ +L + + I L+ ++D LE D
Sbjct: 191 SQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEGD 250
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
LLV ++L+ KC L A F +++++++VSW+ ++A A ++G G
Sbjct: 251 LLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALA------------EHGRG 298
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
A+E F RM +QPN ++L VL ACA G+ H V + T V AL
Sbjct: 299 RDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANAL 358
Query: 304 ISIQG----LGTGSFV-----------WNSLIDMYGRCG---------------AIQKN- 332
+++ G LG+ V W +++ Y G IQ N
Sbjct: 359 VNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNV 418
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+G F +M ++ + P E Y C++DLL RAG ++ ++
Sbjct: 419 ITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLR 478
Query: 376 KMPFEPSSAE------PC----NPDIAEHAARHLFELE-PLSS----------------- 407
MP EP A C + D A+ A+ +L P +S
Sbjct: 479 TMPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFASAPYVLLSNMYTDEEQQS 538
Query: 408 --------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEI---------KKIGYMK 444
G+VH F+AGD SH + +I +L RL E+ ++ G
Sbjct: 539 DPEEDQCSSLIEVKGRVHEFVAGDWSHPRIEEIVAELQRLQEEMMILRGSSLCEEGGQEG 598
Query: 445 RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
+ HS KLA+AFG++++ GS + V+ R+C +CH K +SK R+I++
Sbjct: 599 SVQENEHSLKLAIAFGVLASLQGSSINVVNTRRICVECHDAAKVISKIAG----RKIVVR 654
Query: 505 DNYRFHHFVDGACSCGDY 522
D+YRFHH G CSCGDY
Sbjct: 655 DSYRFHHIEQGVCSCGDY 672
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 28/147 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++D+ V +L+ A+C L+ A F +I K++VSWN+M+A +
Sbjct: 44 FDADVTVATALISALARCGDLEGAREAFDRIPAKNVVSWNSMIAA------------LNE 91
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+G ALE + RM ++P+ IS L +C+ ++ + GK IH V
Sbjct: 92 HGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRDLEQGKSIHDRV----------- 140
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRC 326
+ G T FV N+L++MY +C
Sbjct: 141 -----ATDGFDTQVFVGNALVNMYSKC 162
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-------- 55
++ L MDL VT + + C + G + HA + CG E
Sbjct: 299 RDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANAL 358
Query: 56 ------CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
C LG +F+ M RNV SWT+M+ Y G+ EE +F + EG+
Sbjct: 359 VNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGI 414
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F++M RNV SW+ ++ G + + LF+ + +G V +AC+
Sbjct: 272 AVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTG 331
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
G+ + + FE V +++M+ KCG + A F+ + N+
Sbjct: 332 AIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNV 383
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 166/639 (25%), Positives = 260/639 (40%), Gaps = 203/639 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ +F+ L G Q+HA + CG L F+G +F+++
Sbjct: 110 TFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PERN+ +W + + G +E + F ++ R+G SI
Sbjct: 170 PERNLETWNAYISNSVTDGRPKEAIEAF--------------IEFRRIGGQPN----SIT 211
Query: 126 FEG--NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
F G NAC +LD+ ++ + SG ++D
Sbjct: 212 FCGFLNACSDGLLLDLGMQMHGLVFRSG----------------------------FDTD 243
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V N L+DFY KC+ ++ + F+++ K+ VSW +++A Y Q +
Sbjct: 244 VSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAY------------VQNHED 291
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E A + R + ++ + +S VL+ACA + G +LG+ IH + ++ ++ + VG AL
Sbjct: 292 EKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSAL 351
Query: 304 ISI--------------------------------------------------QGLGTGS 313
+ + +G G
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAP 411
Query: 314 --FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+ SL+ R GA++ G + F+ MK Y +EP E Y C+VD+L RAG +
Sbjct: 412 NYMTFVSLLSACSRAGAVEN--GMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAF 469
Query: 372 NFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG------------- 408
F+KKMP +P+ + C P + AA +LF+L+P SG
Sbjct: 470 EFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAG 529
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+VH+F A D SH + +I L +L ++++
Sbjct: 530 RWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKME 589
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY K HSEKLALAFGL++ P+R+ KNLR+CGDCHS
Sbjct: 590 AAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHS 649
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K+VS + K REII+ DN RFH F DG CSC DYW
Sbjct: 650 FFKFVSGSVK----REIIVRDNNRFHRFKDGICSCKDYW 684
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 30/172 (17%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFE 63
++T+ C L+LG+Q+H + G + L F G +F
Sbjct: 209 SITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFA 268
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL-----------LIDEGVYKACSELKDHR 112
+M +N SW S++ Y V + +E ++ YL + V AC+ +
Sbjct: 269 EMGMKNAVSWCSLVAAY-VQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLE 327
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
+G+ ++ + + E N V ++DM+ KCG +E + F+E NL L
Sbjct: 328 LGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTL 379
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 12/145 (8%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K+ + S ++ G+ +H +K D + N L++ Y+K + + A +++
Sbjct: 14 KNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNV 73
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSW ++ ++G Q G TAL F M + + PN + V A A +
Sbjct: 74 VSWTSL------------VSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASL 121
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVG 300
+ GK+IH ++ L VG
Sbjct: 122 RLPVTGKQIHALAVKCGRILDVFVG 146
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 172/693 (24%), Positives = 275/693 (39%), Gaps = 207/693 (29%)
Query: 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVELCAFLG---------MFEKMP 66
PD TVT L C P L+ + + H+ VC L A+ +F +M
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 197
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKD 116
+++ ++ +MM + G + + + LF + G+ + + +G
Sbjct: 198 DKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ 257
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEKD---------------- 157
V+ ++ N V +LD + KC M E E+D
Sbjct: 258 VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQC 317
Query: 158 -------FSNLSLLKHGKEIHPH-------------HLKKD--------DLESDLLVNNS 189
F + L +++ P+ H+ K L S+ L+ N+
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNA 377
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L+D Y+KC L A FS +K +SW A+ ITG+ Q G E AL+
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL------------ITGYVQNGQHEEALQL 425
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--- 306
FS M + ++P+ + S ++ A + + LG+++H Y++R + S G L+ +
Sbjct: 426 FSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAK 485
Query: 307 -----QGLGT-------GSFVWNSLIDMYGRCG----AIQKNEGW--------------- 335
+ L T S WN++I Y G AI+ EG
Sbjct: 486 CGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSV 545
Query: 336 --------------RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+YF +MK +Y++ P E Y C++D L R G F + +MPF+
Sbjct: 546 LAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFK- 604
Query: 382 SSAEPC-------------NPDIAEHAARHLFELEPLSSG-------------------- 408
A+P N ++A AA LF +EP +
Sbjct: 605 --ADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAAC 662
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K++SF + D + ++ +I ++L RLY E+ K GY
Sbjct: 663 VKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPD 722
Query: 446 IPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
I C HSE+LA+AF L++T G+P+R++KNL C DCH+ K +S
Sbjct: 723 I-TCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMIS 781
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K R+II+ D+ RFHHF DG CSCGDYW
Sbjct: 782 KIVN----RDIIVRDSRRFHHFKDGVCSCGDYW 810
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM--- 61
V L + M D + YA + L ++ +G Q+HA L++ G+ LG
Sbjct: 320 TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALI 379
Query: 62 ---------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
F E++ SWT+++ Y G +EE + LF + G
Sbjct: 380 DMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRA 439
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
+ KA S L +G+ ++ Y+I ++ + ++DM+ KCG ++ A F+E
Sbjct: 440 TFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 498
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 168/596 (28%), Positives = 248/596 (41%), Gaps = 170/596 (28%)
Query: 60 GMFEKMP----ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
G+ E+M E NV +W ++ N G + V + EG A
Sbjct: 107 GLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAV 166
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---DFSNLS 162
++ D VG+ ++ Y++ +ACV ++DM+ KCGR + F+E D ++ +
Sbjct: 167 GDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCN 226
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
L G L ++ S+ L +F + L V VSW +++
Sbjct: 227 ALVAG-------LSRNAQVSEAL--RLFREFVGRGIELNV-------------VSWTSIV 264
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
A Q G A++ F M ++PN++++ VL A A + G+
Sbjct: 265 AC------------CVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGR 312
Query: 283 EIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY---- 323
H + LR VG AL+ + + + + V WN++I Y
Sbjct: 313 SAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHG 372
Query: 324 ----------------------------GRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQY 354
G C A EG YF M+ ++ + P ME Y
Sbjct: 373 EAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHY 432
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEP 404
CMV LL RAG+ DD + + +MPFEP S C N +AE AA +LF+LEP
Sbjct: 433 ACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEP 492
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
++G KVH +AGD+SH
Sbjct: 493 ENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHP 552
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
++ I+EKL L E++++G+ K HSEKLA+A GLISTS G
Sbjct: 553 MMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHG 612
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+PL+VIKNLR+CGDCH K++S E+ REI + D RFHHF DG CSC DYW
Sbjct: 613 TPLQVIKNLRICGDCHEAMKFISSFER----REIYVRDTNRFHHFKDGKCSCADYW 664
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 86/220 (39%), Gaps = 46/220 (20%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------ 233
+ D V +SL+ Y + A + + +V W+A++A +A G E
Sbjct: 51 VSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLE 110
Query: 234 -----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
++G + G A+ RM P+ +S L+A V
Sbjct: 111 RMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVG 170
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
+G+++HGYV++ +L V A LIDMYG+CG + +E R
Sbjct: 171 DVAVGEQLHGYVVKAGCRLDACVATA----------------LIDMYGKCG--RADEIVR 212
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
F+ + +M+ A +V L+R Q + L ++
Sbjct: 213 VFD---ESSHMDVA--SCNALVAGLSRNAQVSEALRLFRE 247
>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 973
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 173/694 (24%), Positives = 279/694 (40%), Gaps = 209/694 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
++TY +I LN+LELG Q+H ++ G + + MF
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFG 356
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD-HR 112
+M E ++ SW +++ G E + LF L+ G V +ACS L++ +
Sbjct: 357 QMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYC 416
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD--------------- 157
VG+ V+ + ++ V ++D++ K G+ME A F +D
Sbjct: 417 VGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFT 476
Query: 158 --------------------------FSN-------LSLLKHGKEIHPHHLKKDDLESDL 184
F+N L L+ GK+IH +K DL
Sbjct: 477 VSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMR-FHYDL 535
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
V + ++D Y KC +K A F++I V+W + I+G + G+ E
Sbjct: 536 FVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTV------------ISGCVENGEEE 583
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL + +M +QP+ + + ++ AC+ + + GK+IH +++ + V +L+
Sbjct: 584 QALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLV 643
Query: 305 SI--------------QGLGTGSF-VWNSLIDMYGRCGAIQK------------------ 331
+ + + T S +WN++I + G ++
Sbjct: 644 DMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRV 703
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
++ ++ F+ M+K Y +EP +E Y C+VD L+RAG + +
Sbjct: 704 TFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSS 763
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MPFE S+ C + + E A LF ++P S
Sbjct: 764 MPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENA 823
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
KVH F+AGD SH I K+ + IK+ GY+
Sbjct: 824 VSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYV 883
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSEKLA+A+GL+ T P + LRVIKNLR+CGDCH+ KY+
Sbjct: 884 PDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYI 943
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S +REI++ D RFHHF G CSCGDYW
Sbjct: 944 SNV----FQREIVLRDANRFHHFRSGICSCGDYW 973
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 18/114 (15%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+ + ++ + Q G+G A++ F MI++ + ++++ +L+ A + +LGK+IHG V+
Sbjct: 265 WNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVV 324
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
R G V NS I+MY + G++ N R F MK+
Sbjct: 325 RF----------------GWDQFVSVANSAINMYVKAGSV--NYARRMFGQMKE 360
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D+ V +L++ YAK + ++ A F ++ + +V WN M+ Y +
Sbjct: 153 LQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAY------------VE 200
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG-KEIHGYVLRHHIQLSTG 298
G G+ L FS ++ ++P+ +S+ +L + F+ +++ Y +
Sbjct: 201 MGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATK-------- 252
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ + + VWN + Y +Q EGW
Sbjct: 253 -----LFVCDDDSDVTVWNKTLSSY-----LQAGEGW 279
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 161 LSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
S+L+H GK H + L D V N+L+ YAKC L A F
Sbjct: 17 FSILRHAIADSDLILGKRTHAV-IVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75
Query: 212 Q--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
Q + LV++NA+LA YA G ++ A F + Q+ M +LS +
Sbjct: 76 QSDRDLVTYNAILAAYAHTGELHDVE------KTHEAFHIFRLLRQSVMLTTRHTLSPLF 129
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
C + + GY ++ +Q V AL++I
Sbjct: 130 KLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNI 166
>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 182/695 (26%), Positives = 271/695 (38%), Gaps = 213/695 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL----------------CAFLG--MFEK 64
VT + +L + +Q+H H+I G E C +L +F+
Sbjct: 141 VTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKH 200
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
M ++ ++ S+M Y+ G EE + LF L + G+ A L D + G
Sbjct: 201 MLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFG 260
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIK------CGRM--EMA----------------S 150
+ V+ +++ F N V +LD + K G++ EM +
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWN 320
Query: 151 GEFEE---------------KDFSNLSLL---------KHGKEIHPHHLK-KDDLESDLL 185
G+F+E + F +LL + G++IH + + ES
Sbjct: 321 GQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR-- 378
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+L+D YAKC K A F I K V W AM++ Y Q G E
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAY------------VQKGKHEE 426
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
+ FS M +T + + + + +L ACA + LG+++H ++R + G AL+
Sbjct: 427 GINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLD 486
Query: 305 ----------SIQGLG----TGSFVWNSLIDMYGRCGAIQKN------------------ 332
+I+ G S WN+LI Y + G +
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546
Query: 333 ---------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
E +F M + Y + P E Y MVD+L R G+FD+ M +M
Sbjct: 547 FLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEM 606
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
PFEPS C N ++A+ AA LF +E L
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNV 666
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+ H F A D SH + KI K+ L E++K GY
Sbjct: 667 AKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY- 725
Query: 444 KRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K C HSE+ A+AF L++T GSP+ V+KNLR C DCH+ K
Sbjct: 726 KPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKV 785
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S+ EREII+ D+ RFHHF DG CSCGDYW
Sbjct: 786 ISQI----VEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 85/354 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P N + L + + HL +L +F+ M ER SWT ++G Y +
Sbjct: 65 VFDQMPAKNTISLNMMISGHLKFG--KLSKARELFDGMVERTAVSWTILIGGYLQSNQSK 122
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E L+ D R G DY+ + +L F
Sbjct: 123 EAFRLY---------------ADMRRGGIEPDYVTLVT----------LLSGF------- 150
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
GE E K+ +IH H +K E +L+V NSL+D Y K L +A F
Sbjct: 151 ---GELETKNVI--------VQIHTHVIKLG-YEYNLMVCNSLVDAYCKTHCLYLASQLF 198
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
+ K V++N+++ GY+ G EE A+E F + + ++P+ + +
Sbjct: 199 KHMLNKDTVTFNSLMTGYSNEGLNEE------------AIELFLELHNSGIKPSDFTFAA 246
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+L+A + K G+++HG+VL+ + + FV N+L+D Y +
Sbjct: 247 LLSAAVGLDDTKFGQQVHGFVLKTNFVWNV----------------FVGNALLDYYSKHD 290
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMPF 379
Q +E + F M P ++ Y ++ A GQF ++ + +K+ F
Sbjct: 291 --QVDEVGKLFXEM-------PELDGISYNVVITSYAWNGQFKESFDLFRKLQF 335
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 178/663 (26%), Positives = 284/663 (42%), Gaps = 161/663 (24%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVT--YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL 59
++ + LL +++D NPD T+ + +IF N LGI++ CG E
Sbjct: 17 ILTSFGLLAKALD-QNPDIKTLKKLHTMIFY-LNSHQNPSLGIKLMRSYAACG-EPGLTR 73
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F++M +RNV + M+ Y Y++ + +F +++ G V KACS +
Sbjct: 74 KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+ R G ++ ++ + + N V ++ M+ KCG + A F+E + ++
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVA 193
Query: 170 IHPHHLKKDDL------------ESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHL 215
+ H+++ DD + D SLM A V + + F +++K+L
Sbjct: 194 GYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNL 253
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
+SWN M+ Y + A++ + +M + ++P+ I+ + VL AC +
Sbjct: 254 ISWNVMIRVYMKNSLPTQ------------AVDLYLQMEKCRVEPDAITFASVLPACGDL 301
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLI 320
LG+ IH YV + + + + +LI + L V W SLI
Sbjct: 302 SALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLI 361
Query: 321 DMYGR----CGAIQK-----------------------------NEGWRYFEMMKKEYNM 347
YG C A+ +EG YF+ M +Y +
Sbjct: 362 SAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRI 421
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
P +E Y C+VDLL RAG+ D+ N +K+MP EP+ C N DI AA
Sbjct: 422 TPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAAD 481
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
+L +L P SG +VH+F+
Sbjct: 482 NLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFL 541
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
AGDTSH +I E+L L +++K++GY+ + HSEKLA+ F
Sbjct: 542 AGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFA 601
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
L++T +R+ KNLR+CGDCH K +SK EREII+ D RFHHF DG CSCG
Sbjct: 602 LLNTQE-YQIRITKNLRVCGDCHIAAKLISKIV----EREIIVRDTNRFHHFKDGVCSCG 656
Query: 521 DYW 523
DYW
Sbjct: 657 DYW 659
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 174/641 (27%), Positives = 274/641 (42%), Gaps = 180/641 (28%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG----------VELCAFLG-------MFEKMPE 67
Y + + C K L+ G QVHAH+ G +++ A G +F++M
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAHIKTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVH 181
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
R++ SW M+ Y G +E+ NLF D +D + + I
Sbjct: 182 RDLCSWNIMISGYVKGGNFEKARNLF----------------DKMPNRDNFSWTAII--- 222
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL----------LKHGKEIHPHHLKK 177
+ CV+ + ++ R+ M ++ + + +S L GK+IH H ++
Sbjct: 223 -SGCVQHNRPEEALELYRL-MQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRM 280
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+SD +V SL+D Y KC ++ A F K++++ +VSW M+ Y G REE GF
Sbjct: 281 G-LDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREE--GF 337
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
F ++ +++ PN + +GVL ACA + LGK+IH Y++R +
Sbjct: 338 A----------LFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFS 387
Query: 298 GVGIALI-------SIQGLGT--------GSFVWNSLIDMYGRCGAIQK----------- 331
AL+ I+ + F W SL+ Y + G K
Sbjct: 388 SAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKS 447
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++G YF +K+++ + ++ Y C++DLLARAGQF +
Sbjct: 448 GTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTE 507
Query: 370 TLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEP-------------LS 406
+ + +MP +P C N ++A+ AA+ LFE+EP S
Sbjct: 508 AESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYAS 567
Query: 407 SG------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+G +VH F GD SH +I E L L
Sbjct: 568 AGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKR 627
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+K++GY+ K HSEKLA+AFG+IST G+P++V KNLR C DC
Sbjct: 628 MKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDC 687
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K++S R+II+ D+ RFH F G+CSC DYW
Sbjct: 688 HNAIKFISNITG----RKIIVRDSNRFHCFEGGSCSCKDYW 724
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FEKM 65
T+A + C L +LG Q+HA+++ G + A + M FE +
Sbjct: 354 TFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEIL 413
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
P+ ++FSWTS++ Y G +++ ++ F LL+ G
Sbjct: 414 PQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGT 449
>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
gi|219885099|gb|ACL52924.1| unknown [Zea mays]
Length = 530
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 163/580 (28%), Positives = 251/580 (43%), Gaps = 180/580 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMP R+V SWT Y + GY + + +A L D
Sbjct: 14 VFDKMPSRDVVSWT-----YLIAGYAQNYMPA----------EAIGLLPD---------- 48
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+ +F N +L CG + G+++H +K +
Sbjct: 49 MLRARFRPNGFTFTSLLKATGACGGCSI------------------GEQMHALAVKYN-W 89
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V ++L+D YA+C + +A F ++ K+ VSWNA++AG+A +
Sbjct: 90 DEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFA------------RK 137
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
DGET L F+ M + + S + +A A++ + G+ +H ++++ +L+ VG
Sbjct: 138 ADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 197
Query: 301 IALISIQGLGTGSFV----------------WNSLID---MYG-------------RCGA 328
++ + +GS V WN+++ YG +CG
Sbjct: 198 NTMLGMYA-KSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCG- 255
Query: 329 IQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
IQ N EG YF+MMK +YN++P ++ Y VDLL RAG +
Sbjct: 256 IQLNQITFLSVLTACSHGGLVKEGKHYFDMMK-DYNVQPEIDHYVSFVDLLGRAGLLKEA 314
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------------LSS 407
L F+ KMP EP++A C N + ++AA H+FEL+P S+
Sbjct: 315 LIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYAST 374
Query: 408 GK------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
GK VH F+A D +H I + I
Sbjct: 375 GKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRI 434
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
KK GY+ + HSEK+ALAF LI+ G+ +R++KN+R+CGDCH
Sbjct: 435 KKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCH 494
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S KYVSK K REI++ D RFHHF +G+CSCGDYW
Sbjct: 495 SAFKYVSKVFK----REIVVRDTNRFHHFSEGSCSCGDYW 530
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 28/133 (21%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC + A F K+ + +VSW ++AGYA E G M
Sbjct: 2 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIG------------LLPDM 49
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++ +PN + + +L A G +G+++H ++++ VG
Sbjct: 50 LRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVG------------- 96
Query: 314 FVWNSLIDMYGRC 326
++L+DMY RC
Sbjct: 97 ---SALLDMYARC 106
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY+ +F ++ LE G VHAHLI G +L AF+G +F++M
Sbjct: 161 TYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRM 220
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+R++ +W +M+ G +E V F + G V ACS + GK
Sbjct: 221 DKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGK 280
Query: 116 DVYDYM 121
+D M
Sbjct: 281 HYFDMM 286
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 182/695 (26%), Positives = 271/695 (38%), Gaps = 213/695 (30%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL----------------CAFLG--MFEK 64
VT + +L + +Q+H H+I G E C +L +F+
Sbjct: 141 VTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKH 200
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVG 114
M ++ ++ S+M Y+ G EE + LF L + G+ A L D + G
Sbjct: 201 MLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFG 260
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIK------CGRM--EMA----------------S 150
+ V+ +++ F N V +LD + K G++ EM +
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWN 320
Query: 151 GEFEE---------------KDFSNLSLL---------KHGKEIHPHHLK-KDDLESDLL 185
G+F+E + F +LL + G++IH + + ES
Sbjct: 321 GQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESR-- 378
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+L+D YAKC K A F I K V W AM++ Y Q G E
Sbjct: 379 VENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAY------------VQKGKHEE 426
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
+ FS M +T + + + + +L ACA + LG+++H ++R + G AL+
Sbjct: 427 GINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLD 486
Query: 305 ----------SIQGLG----TGSFVWNSLIDMYGRCGAIQKN------------------ 332
+I+ G S WN+LI Y + G +
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546
Query: 333 ---------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
E +F M + Y + P E Y MVD+L R G+FD+ M +M
Sbjct: 547 FLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEM 606
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
PFEPS C N ++A+ AA LF +E L
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNV 666
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+ H F A D SH + KI K+ L E++K GY
Sbjct: 667 AKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGY- 725
Query: 444 KRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K C HSE+ A+AF L++T GSP+ V+KNLR C DCH+ K
Sbjct: 726 KPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKV 785
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S+ EREII+ D+ RFHHF DG CSCGDYW
Sbjct: 786 ISQI----VEREIIVRDSSRFHHFKDGVCSCGDYW 816
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 82/354 (23%), Positives = 145/354 (40%), Gaps = 85/354 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P N + L + + HL +L +F+ M ER SWT ++G Y +
Sbjct: 65 VFDQMPAKNTISLNMMISGHLKFG--KLSKARELFDGMVERTAVSWTILIGGYLQSNQSK 122
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E L+ D R G DY+ + +L F
Sbjct: 123 EAFRLY---------------ADMRRGGIEPDYVTLVT----------LLSGF------- 150
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
GE E K+ +IH H +K E +L+V NSL+D Y K L +A F
Sbjct: 151 ---GELETKNVI--------VQIHTHVIKLG-YEYNLMVCNSLVDAYCKTHCLYLASQLF 198
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
+ K V++N+++ GY+ G EE A+E F + + ++P+ + +
Sbjct: 199 KHMLNKDTVTFNSLMTGYSNEGLNEE------------AIELFLELHNSGIKPSDFTFAA 246
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+L+A + K G+++HG+VL+ + + FV N+L+D Y +
Sbjct: 247 LLSAAVGLDDTKFGQQVHGFVLKTNFVWNV----------------FVGNALLDYYSKHD 290
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMPF 379
+ + G ++EM P ++ Y ++ A GQF ++ + +K+ F
Sbjct: 291 QVDE-VGKLFYEM--------PELDGISYNVVITSYAWNGQFKESFDLFRKLQF 335
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 177/695 (25%), Positives = 291/695 (41%), Gaps = 213/695 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQV---------HAHLIVCGVELCAFL----------GMF 62
T +AL + C L + E+G+++ H HL V G + FL +F
Sbjct: 147 TCMFAL--KACTDLLDDEVGMEIIRAAVRRGFHLHLYV-GSSMVNFLVKRGYLADAQKVF 203
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHR 112
+ MPE++V W S++G Y G + E + +F +I G+ KAC + +
Sbjct: 204 DGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKK 263
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE----------------- 155
VG + Y++++ + V ++DM+ G A+ F+
Sbjct: 264 VGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYV 323
Query: 156 -------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
+ S S L++G+ +H ++K+ LES L
Sbjct: 324 QNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE-LESHL 382
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+++ +++D Y+KC +K A F ++ +K++++W AML G +Q G E
Sbjct: 383 VLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAML------------VGLSQNGYAE 430
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL+ F +M + + N+++L ++ CA + G+ +H + +RH + ALI
Sbjct: 431 DALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALI 490
Query: 305 ----------SIQGLGTGSF------VWNSLIDMYGRCG---------------AIQKN- 332
S + L F + NS+I YG G ++ N
Sbjct: 491 DMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQ 550
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG F M++++++ P + Y C+VDL +RAG+ ++ +K
Sbjct: 551 TTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVK 610
Query: 376 KMPFEPSS------AEPC----NPDIAEHAARHLFELEPLSSG----------------- 408
+MPF+PS+ C N ++ A L L+ L+SG
Sbjct: 611 QMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWES 670
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KV++F A D SH I + L L E++ GY
Sbjct: 671 VNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGY 730
Query: 443 --------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
MK GHSE+LA+AFGL+ST GS +++ KNLR+C DCH+ TKY
Sbjct: 731 IPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKY 790
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +REII+ D RFHHFV+G CSC D+W
Sbjct: 791 ISKIV----QREIIVRDANRFHHFVNGKCSCNDFW 821
>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
Length = 1062
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 187/705 (26%), Positives = 281/705 (39%), Gaps = 215/705 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG------------VELCAFLG--- 60
N D V + I + L G +VHAH++ G V + A G
Sbjct: 376 VNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAID 435
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACS 106
+F+ M R+ SW +++ + GY E + + L+ + +C+
Sbjct: 436 KACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCA 495
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME------------------- 147
L G+ ++ + + V ++ M+ +CGRM
Sbjct: 496 GLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNS 555
Query: 148 ----MASGEFEEKD----FSN----------------------LSLLKHGKEIHPHHLKK 177
MAS + + FSN LS+L+ GK+IH LK
Sbjct: 556 IMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKH 615
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEITG 236
E D V+N+LM YAK + FS++ ++ +SWN+M++GY G +E
Sbjct: 616 GVTE-DNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQE--- 671
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A++ M+ ++ + + S VL ACA V + G E+H + LR H++
Sbjct: 672 ---------AMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESD 722
Query: 297 TGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK---------- 331
V AL+ + F WNS+I Y R G +K
Sbjct: 723 VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQE 782
Query: 332 -----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
G YFE+M+ +Y + P +E Y C++DLL RAG+ D
Sbjct: 783 SGESPDHVTFVSVLSACSHAGLVERGLDYFELME-DYGILPRIEHYSCVIDLLGRAGELD 841
Query: 369 DTLNFMKKMPFEPS-------------SAEPCNPDIAEHAARHLFELEP-------LSS- 407
+MK+MP +P+ S D+ A+R L ELEP LSS
Sbjct: 842 KIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSK 901
Query: 408 ---------------------------GK--------VHSFIAGDTSHSLVHKISEKLMR 432
G+ VH+FIAGD SH +I EKL
Sbjct: 902 FHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNF 961
Query: 433 LYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L +I+ GY+ HSEKLA+AF L +S G P+R++KNLR+
Sbjct: 962 LIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRV 1021
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCH+ +Y+S+ R+II+ D+ RFHHF DG CSCGDYW
Sbjct: 1022 CGDCHTAFRYISQIVG----RQIILRDSIRFHHFKDGKCSCGDYW 1062
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/385 (22%), Positives = 137/385 (35%), Gaps = 101/385 (26%)
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------- 100
G L A +F+ MP RN SWT ++ + + G E+ LF ++ EG
Sbjct: 113 GARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFG 172
Query: 101 -VYKACSELKDHRVG--KDVYDYMISIKFEGNACVKRPVLDMFIKC--GRMEMASGEFEE 155
V +AC + R+G V+ + +F N V ++ M+ C G +A F+
Sbjct: 173 SVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDT 232
Query: 156 KDFSNL----SLL----KHGKEIHPHHL----KKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+L +L+ K G I L + DD +L YL +
Sbjct: 233 TPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYL--S 290
Query: 204 HCKFSKIKQ-----------KHLVSWNAMLAGYALGGFREE------------------- 233
C + Q L +A+++ +A G +E
Sbjct: 291 SCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGL 350
Query: 234 ITGFTQYGDGETALEFF-----SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
I G + GE A E F S + D + LS + +G + G+E+H +V
Sbjct: 351 IAGLVKQQHGEAAAEIFMGARDSAAVNVDTY--VVLLSAIAEFSTAEQGLRKGREVHAHV 408
Query: 289 LRH-HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
LR HI V N L++MY +CGAI K R F++M+ +
Sbjct: 409 LRAGHIYRKIAVS----------------NGLVNMYAKCGAIDK--ACRVFQLMEARDRI 450
Query: 348 ---------------EPAMEQYCCM 357
E AM YC M
Sbjct: 451 SWNTIITALDQNGYCEAAMMNYCLM 475
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 39/205 (19%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K L DL + N L++ YAK L A F + ++ VSW +++G+ L G E+
Sbjct: 93 KRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPED--- 149
Query: 237 FTQYGDGETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLG--KEIHGYVLRHH 292
A F M++ +P + + VL AC +LG ++HG
Sbjct: 150 ---------AFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHG------ 194
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM--MKKEYNMEPA 350
L+S + + V N+LI MYG C R F+ ++
Sbjct: 195 ----------LVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNAL 244
Query: 351 MEQYCCMVD-----LLARAGQFDDT 370
M Y D L RA Q+DD+
Sbjct: 245 MSVYAKRGDAICTFTLFRAMQYDDS 269
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 228/548 (41%), Gaps = 142/548 (25%)
Query: 101 VYKACSELKDHRVGKDV--YDYMISIKFE----GNACVKRPVLDMFIKCGRMEMASGEFE 154
+Y C ++KD R+ ++ YD +I + F + ++F++ R + E+
Sbjct: 288 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 347
Query: 155 EKDF----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210
+N+ L GK+IH H +K ESDL V N+LMDFYAKC + + FS +
Sbjct: 348 LSSVLQACTNMVQLDFGKQIHNHAIKIGH-ESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406
Query: 211 KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ + VSWN + + GF+Q G GE AL F M M ++ S VL
Sbjct: 407 RDANEVSWNTI------------VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 454
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS--------------IQGLGTGSFV- 315
ACA + +IH + + T +G +LI Q L +
Sbjct: 455 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 514
Query: 316 WNSLIDMYGR---------------------------------CGAIQKNEGWRYFEMMK 342
WN++I Y C N G F+ M+
Sbjct: 515 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMR 574
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIA 392
++ ++P+ME Y C+V LL RAG+ +D L F+ +P PS+ C N +
Sbjct: 575 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 634
Query: 393 EHAARHLFELEP--------LSS-----------------------------------GK 409
+A + E+EP LS+ G+
Sbjct: 635 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGE 694
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKL 455
+H+F G H + I+ L L + + GY+ I HSE+L
Sbjct: 695 IHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERL 754
Query: 456 ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
ALA+GL+ T PG P+R++KNLR C DCH+ +SK K REII+ D RFHHF DG
Sbjct: 755 ALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVK----REIIVRDINRFHHFEDG 810
Query: 516 ACSCGDYW 523
CSCGDYW
Sbjct: 811 KCSCGDYW 818
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 73/306 (23%), Positives = 120/306 (39%), Gaps = 70/306 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MPERN+ S+ +++ + G +E LF L EG + K +
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+ V+ + + NA V ++D + C + A F
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237
Query: 155 -------EKDF------SNLSLLKHGKEIHPHHLKK-DDLESDLLVNNSLMDFYAKCRYL 200
E F S L++ + IH +K +D E V +L+D YAKC +
Sbjct: 238 YSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPH--VGGALLDMYAKCGDI 295
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
K A F I ++ + M++ YA Q E A E F R++++ + P
Sbjct: 296 KDARLAFEMIPYDDVILLSFMISRYA------------QSNQNEQAFELFLRLMRSSVLP 343
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
N SLS VL AC + GK+IH + ++ G + FV N+L+
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIK----------------IGHESDLFVGNALM 387
Query: 321 DMYGRC 326
D Y +C
Sbjct: 388 DFYAKC 393
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 166/607 (27%), Positives = 254/607 (41%), Gaps = 189/607 (31%)
Query: 88 EIVNLFYLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
+++N L D +Y K C+ L + GK V+ ++++ KF + +K +L M+ KC
Sbjct: 80 DLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKC 139
Query: 144 GRMEMASGEFEE------------------------------------------KDFSNL 161
G +E+A F+E +F+
Sbjct: 140 GSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALS 199
Query: 162 SLLK---------HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
SL+K GK+IH K + ++ V +SL+D YA+C L+ + F +++
Sbjct: 200 SLVKCCGFLGSCVDGKQIHGCCWKYG-FQENVFVGSSLVDMYARCGELRESRLVFDELES 258
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K+ VSWNA+ I+GF + G+GE AL F +M + + S +L +
Sbjct: 259 KNEVSWNAL------------ISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSS 306
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWN 317
+ + GK +H ++++ +L VG L+ + + N
Sbjct: 307 STTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCN 366
Query: 318 SLIDMYGRCG----------------AIQKN------------------EGWRYFEMMKK 343
S++ Y + G I+ N EG YFE+MKK
Sbjct: 367 SMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK 426
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAE 393
Y +EP + Y +VDL RAG D +F+++MP EP +S N ++
Sbjct: 427 -YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGA 485
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
+AA+ + EL+P G V
Sbjct: 486 YAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSV 545
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F A D SH +K+ E L +IK+IGY+ K + HSEKLA
Sbjct: 546 HIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLA 605
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
LAF L++T PGS +R++KN+R+CGDCHS KYVS K REII+ D RFHHF DG+
Sbjct: 606 LAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVK----REIIVRDTNRFHHFRDGS 661
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 662 CSCRDYW 668
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 153/605 (25%), Positives = 265/605 (43%), Gaps = 163/605 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-YD 119
+ ++MPE++ +WT++ V+G+ + V+ A S ++ DV ++
Sbjct: 221 VLDEMPEKDELTWTTI-----VVGHVRK----------GDVHAARSAFEEIDGEFDVVWN 265
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHL 175
MIS + C + ++F + + EF +N HGK +H +
Sbjct: 266 AMISGYVQSGMCAE--AFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFI 323
Query: 176 K-KDDL--ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--- 229
+ + D E+ L VNN+L+ Y+K + VA F + K +VSWN +L+GY G
Sbjct: 324 RLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLD 383
Query: 230 -----FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
F+E ++G+ G E AL+ F++M D++P + +G +AAC
Sbjct: 384 NAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACG 443
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNS 318
++ K GK++H ++++ + S G AL+++ S WN+
Sbjct: 444 ELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNA 503
Query: 319 LIDMYGRCG---------------------------------AIQKNEGWRYFEMMKKEY 345
+I G+ G A ++G++YFE M++++
Sbjct: 504 MISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDF 563
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHA 395
+ P + Y ++DLL RAG+ + + +K MPFEP+ A C + ++ +A
Sbjct: 564 GISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYA 623
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
A LF++ P G KVH
Sbjct: 624 ADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHV 683
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F+ GDT H H++ L + ++++K+GY+ K HSE+LA++
Sbjct: 684 FLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLFAHSERLAVS 743
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
FGL+ G+ + V+KNL++CGDCH+ ++S+A REI++ D RFHHF DG CS
Sbjct: 744 FGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVG----REIVVRDVRRFHHFKDGECS 799
Query: 519 CGDYW 523
CG+YW
Sbjct: 800 CGNYW 804
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----AFLGMFE 63
L M + C TYA C +L L+ G Q+HAHL+ CG E A L M+
Sbjct: 419 LFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYA 478
Query: 64 K-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
+ MP + SW +M+ G+ E + LF ++ +G+Y
Sbjct: 479 RCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIY 530
>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
Length = 736
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 157/637 (24%), Positives = 266/637 (41%), Gaps = 192/637 (30%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID---EGVYK----------ACSEL 108
F++M ++ + +W +++ Y+ G + + ++ ++ EG+ ACS +
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVV 176
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF------- 158
D G+++ ++ + ++ V+ +++M+ KCG +E A F+ +D
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236
Query: 159 --------------------------------------SNLSLLKHGKEIHPHHLKKDDL 180
+NL L+ G+ IH +K+
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIH-RKVKEHGY 295
Query: 181 ESDLLVNNSLMDFYAKCRY-LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
ESDL++ N L++ Y KC L+ A F +++ + +++WN ++ Y Q
Sbjct: 296 ESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAY------------VQ 343
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
YG + AL+ F +M ++ PN I+LS VL+ACA + + GK +H + + +
Sbjct: 344 YGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVL 403
Query: 300 GIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQK------------- 331
+L+++ + S V W++LI Y + G +
Sbjct: 404 ENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGL 463
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
EG + F M ++ + P + CMVDLL+RAG+ +
Sbjct: 464 AADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAE 523
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------------LSS 407
N + MPF P + C + A A LFELE +
Sbjct: 524 NLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEA 583
Query: 408 GK---------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
G+ VH F+AGD SH I+ ++ RL ++K
Sbjct: 584 GRWDDVRKTRNRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDA 643
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ K C HSEKLA+A+GLIST PG+PL ++KNLR C DCH+
Sbjct: 644 GYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAA 703
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++S R R+I++ D+ RFHHF +G+CSC DYW
Sbjct: 704 KFIS----RIVGRKIVVRDSTRFHHFENGSCSCKDYW 736
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 139/335 (41%), Gaps = 83/335 (24%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG + L +F + N SWT ++ + G+Y E + + ++ EG+
Sbjct: 5 CG-SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL--------- 54
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RP MF+ + +S + LK G+ +
Sbjct: 55 -----------------------RPDGAMFVVAIGVCSSSKD-----------LKQGQLL 80
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L+ LE D+++ +L+ YA+CR L++A F ++ +K LV+WNA++AGY
Sbjct: 81 HAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGY----- 135
Query: 231 REEITGFTQYGDGETALEFFSRMIQTD---MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
++ GD AL+ + M+ M+P+ I+ S L AC+ V G+EI
Sbjct: 136 -------SRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEAR 188
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+ G + S V N+LI+MY +CG+++ + F+ +K +
Sbjct: 189 TV----------------ASGYASDSIVQNALINMYSKCGSLESAR--KVFDRLKNRDVI 230
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEP 381
+ M+ A+ G L ++M P +P
Sbjct: 231 -----AWNTMISGYAKQGAATQALELFQRMGPNDP 260
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 81/197 (41%), Gaps = 32/197 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIV--------- 50
L Q M +P VT+ + C L +LE G +H + L++
Sbjct: 251 LFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYT 310
Query: 51 -CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-------- 101
C L +FE++ R+V +W ++ Y G ++ +++F + E V
Sbjct: 311 KCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLS 370
Query: 102 --YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEK 156
AC+ L R GK V+ + S + + + ++ +++M+ +CG ++ G F +K
Sbjct: 371 NVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDK 430
Query: 157 DFSNLSLLKHGKEIHPH 173
+ S L H H
Sbjct: 431 SLVSWSTLIAAYAQHGH 447
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y KC + A F I+ + VSW ++A +A G E AL ++ R
Sbjct: 1 MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYRE------------ALGYYRR 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQG--- 308
M+ ++P+ + C+ K K G+ +H +L ++ +G ALI++
Sbjct: 49 MVLEGLRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCR 108
Query: 309 -----------LGTGSFV-WNSLIDMYGRCG 327
+G + V WN+LI Y R G
Sbjct: 109 DLELARKTFDEMGKKTLVTWNALIAGYSRNG 139
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 154/563 (27%), Positives = 235/563 (41%), Gaps = 182/563 (32%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ + + I + A L+ G A+ +F +MPERNV SWTSM+G Y G +
Sbjct: 170 VFDKMPQRDVITWNIMI-ARLVKMGDAEGAY-KLFAEMPERNVRSWTSMIGGYAQCGKSK 227
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E ++LF + D G+ + V+ + + C
Sbjct: 228 EAIDLFLEMEDAGLLPN----------------------------EVTVVAVLVACA--- 256
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
D NL L G+ IH + E ++ V N+L+D Y KC L+ A F
Sbjct: 257 ---------DMGNLVL---GRRIHDFS-NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIF 303
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++++ +VSW+AM+AG A +G E AL F++MI T ++PN ++ G
Sbjct: 304 DNMEERTVVSWSAMIAGLA------------AHGRAEDALALFNKMINTGVKPNAVTFIG 351
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+L AC+ + G
Sbjct: 352 ILHACSHM---------------------------------------------------G 360
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA--- 384
++K G +YF M ++Y + P +E Y CMVDL +RAG + F+ MP P+
Sbjct: 361 MVEK--GRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWG 418
Query: 385 ---EPC----NPDIAEHAARHLFELEPLSSG----------------------------- 408
C N +AE A RHL +L+PL+ G
Sbjct: 419 ALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRG 478
Query: 409 --------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC----- 449
V++F+AGD +H +I + +L +K GY+
Sbjct: 479 VKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDME 538
Query: 450 ---------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEKLA+ FGLI T+PG+ +R++KNLR+C DCH+ K +S RE
Sbjct: 539 EDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVST----RE 594
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I++ D RFH F +G+CSCGDYW
Sbjct: 595 IVVRDRNRFHCFKNGSCSCGDYW 617
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 44/215 (20%)
Query: 168 KEIHPHHLKKDDLESDLLVNN--SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K++H H LK + S L ++ S+ F + Y K+ F + + WN L +
Sbjct: 32 KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLI---FQLLDASEVTHWNTCLRSF 88
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
A G + A+ F R+ + D+ P+ + S VL AC+++ + GK +H
Sbjct: 89 AEGDSPAD------------AISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVH 136
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
GYV + GL + F+ N ++ +Y CG I + +K +
Sbjct: 137 GYVEK----------------LGLQSNMFLQNMIVHLYALCGEIG---------VARKVF 171
Query: 346 NMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMP 378
+ P + + M+ L + G + +MP
Sbjct: 172 DKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMP 206
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 172/693 (24%), Positives = 275/693 (39%), Gaps = 207/693 (29%)
Query: 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVELCAFLG---------MFEKMP 66
PD TVT L C P L+ + + H+ VC L A+ +F +M
Sbjct: 138 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 197
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKD 116
+++ ++ +MM + G + + + LF + G+ + + +G
Sbjct: 198 DKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQ 257
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEKD---------------- 157
V+ ++ N V +LD + KC M E E+D
Sbjct: 258 VHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQC 317
Query: 158 -------FSNLSLLKHGKEIHPH-------------HLKKD--------DLESDLLVNNS 189
F + L +++ P+ H+ K L S+ L+ N+
Sbjct: 318 AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNA 377
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L+D Y+KC L A FS +K +SW A+ ITG+ Q G E AL+
Sbjct: 378 LIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL------------ITGYVQNGQHEEALQL 425
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--- 306
FS M + ++P+ + S ++ A + + LG+++H Y++R + S G L+ +
Sbjct: 426 FSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAK 485
Query: 307 -----QGLGT-------GSFVWNSLIDMYGRCG----AIQKNEGW--------------- 335
+ L T S WN++I Y G AI+ EG
Sbjct: 486 CGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSV 545
Query: 336 --------------RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+YF +MK +Y++ P E Y C++D L R G F + +MPF+
Sbjct: 546 LAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFK- 604
Query: 382 SSAEPC-------------NPDIAEHAARHLFELEPLSSG-------------------- 408
A+P N ++A AA LF +EP +
Sbjct: 605 --ADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAAC 662
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
K++SF + D + ++ +I ++L RLY E+ K GY
Sbjct: 663 VKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPD 722
Query: 446 IPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
I C HSE+LA+AF L++T G+P+R++KNL C DCH+ K +S
Sbjct: 723 I-TCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMIS 781
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K R+II+ D+ RFHHF DG CSCGDYW
Sbjct: 782 KIV----NRDIIVRDSRRFHHFKDGVCSCGDYW 810
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM--- 61
V L + M D + YA + L ++ +G Q+HA L++ G+ LG
Sbjct: 320 TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALI 379
Query: 62 ---------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
F E++ SWT+++ Y G +EE + LF + G
Sbjct: 380 DMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRA 439
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
+ KA S L +G+ ++ Y+I ++ + ++DM+ KCG ++ A F+E
Sbjct: 440 TFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 498
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 172/631 (27%), Positives = 254/631 (40%), Gaps = 192/631 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGV--------------ELCAFLG----MFEKMP 66
YA + + C LE G Q+HA L G+ +C L +F+K+P
Sbjct: 61 YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+ N+F W ++ Y G +E ++L++ +++ G LK ++ F
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG-------LKPDN---------FTLPF 164
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
AC S LS + G+ IH + + E D+ V
Sbjct: 165 VLKAC---------------------------SALSTIGEGRVIH-ERVIRSGWERDVFV 196
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D YAKC + A F KI + V WN+MLA YA G +E +
Sbjct: 197 GAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDE------------S 244
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L M ++P +L V+++ A + G+EIHG+ RH Q + V ALI +
Sbjct: 245 LSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDM 304
Query: 307 QGLGTGSFV---------------WNSLI-------------DMYGR------------C 326
V WN++I D++ R
Sbjct: 305 YAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHITFV 364
Query: 327 GAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
GA+ +EG + +M ++ + P +E Y CMVDLL GQ D+ + +++M
Sbjct: 365 GALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDV 424
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
P S C N ++AE A L ELEP SG
Sbjct: 425 MPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARL 484
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
KV++F++GD SH I +L RL +++ GY+
Sbjct: 485 RQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDT 544
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K C HSE+LA+AFGLIST PG+ L + KNLR+C DCH K++SK
Sbjct: 545 GSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKI 604
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EREI + D R+HHF G CSCGDYW
Sbjct: 605 T----EREITVRDVNRYHHFRHGLCSCGDYW 631
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 166/641 (25%), Positives = 268/641 (41%), Gaps = 200/641 (31%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
PD T+ I + C L + E GI++H ++ G + F+
Sbjct: 7 QPD--NFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F++MP++N SW++++G AC + + G ++
Sbjct: 65 RQVFDEMPDKNAVSWSAIIG-------------------------ACLQDDRCKEGFSLF 99
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
M+S EG+ + +L+ + C R EE D ++++G
Sbjct: 100 RQMLS---EGSRPSRGAILNA-MACVR------SHEEADDVYRVVVENG----------- 138
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V ++ +A+C ++VA F I K LV+W + Y E
Sbjct: 139 -LDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLE----- 192
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR--HHIQLS 296
AL +M+ + P+ I+L GV+ AC+ + F+L +HG + + QL
Sbjct: 193 -------ALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQL- 244
Query: 297 TGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG-------------- 327
V ALI + G+ + + W+++I YG G
Sbjct: 245 LAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKA 304
Query: 328 AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+++ + EGW F M +++ + P E Y CMVD+L RAG+ D+
Sbjct: 305 SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDE 364
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------- 408
+F+++MP P++A C N D+AE AR LF+L+P ++G
Sbjct: 365 ACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTL 424
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
K+++F+AGD SH I +L RL
Sbjct: 425 TGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDR 484
Query: 437 IKKIGYMKRIPACGH--------------SEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
I++ GY I H SEKLA+ FGL++ PGS +R+ KNLR+CGDC
Sbjct: 485 IRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDC 544
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ TK++SK REI++ D +RFHHF +GACSC DYW
Sbjct: 545 HTATKFISKVTG----REIVVRDAHRFHHFKNGACSCRDYW 581
>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
Length = 647
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 154/599 (25%), Positives = 242/599 (40%), Gaps = 155/599 (25%)
Query: 47 HLIVCGVELCAF---LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103
HL++ +L F G+FE++P+RNV SW ++G Y G E LF
Sbjct: 82 HLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLF---------- 131
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----S 159
D ++V + + N+ + L F R M E+ +
Sbjct: 132 ------DEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCA 185
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
L + G+++H + + + L+ D+ V +SL Y +C +L+ + ++VS N
Sbjct: 186 GLRDVVSGRQVHAY-VVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCN 244
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
I+G TQ GD E ALEFF M ++ N ++ + +C+ +
Sbjct: 245 TT------------ISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALA 292
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALI---------------SIQGLGTGSFVWNSLIDMYG 324
G++IH ++ + V +L+ ++ GT + +++I YG
Sbjct: 293 QGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYG 352
Query: 325 RCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAM 351
G QK +EG FE+M K Y ++P++
Sbjct: 353 FHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSV 412
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFE 401
+ Y C+VDLL R+G ++ + + MP +P C D+AE A + E
Sbjct: 413 KHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIE 472
Query: 402 LEPLSS-------------------------------------------GKVHSFIAGDT 418
L+P S G++H F GD
Sbjct: 473 LDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDE 532
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
SHS +I E L + + I++ GY K + HSEKLA+AF +S
Sbjct: 533 SHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSL 592
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+RV+KNLR+C DCH K +SK REI++ D RFHHF DG CSCGDYW
Sbjct: 593 PEGVPIRVMKNLRVCDDCHVAIKLMSKVIG----REIVVRDVSRFHHFKDGKCSCGDYW 647
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 108/303 (35%), Gaps = 49/303 (16%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------- 233
D N L+ YA A F +I +++++SWN ++ GY G E
Sbjct: 76 DRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMP 135
Query: 234 ----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ G T G E +L FF M + MQP+ L + CA ++ G++
Sbjct: 136 ARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQ 195
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H YV+R GL V +SL MY RCG ++ E
Sbjct: 196 VHAYVVR----------------SGLDRDMCVGSSLAHMYMRCGFLRDGEA--------- 230
Query: 344 EYNMEPAMEQYCCMVDLLARA--GQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFE 401
P++ C + R G + L F M + N A +
Sbjct: 231 ALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLM---RGAGVEANAVTFVSAVTSCSD 287
Query: 402 LEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGL 461
L L+ G+ +A T V + L+ +YS +G +R+ L L +
Sbjct: 288 LAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAM 347
Query: 462 IST 464
IS
Sbjct: 348 ISA 350
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 157/629 (24%), Positives = 250/629 (39%), Gaps = 166/629 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
+V ++F R + + H+ C +L L +F++M + ++ SW S++ Y
Sbjct: 196 SVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLA--LALFDQMTDPDIVSWNSIITGYC 253
Query: 82 VLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
GY + F ++ V AC+ + ++GK ++ +++ +
Sbjct: 254 HQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAG 313
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
V ++ M+ K G +E+A E +L+++ SL
Sbjct: 314 AVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF---------------------TSL 352
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
+D Y K + A F +K + +V+W AM+ GYA G + AL F
Sbjct: 353 LDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISD------------ALVLF 400
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
MI+ +PN +L+ VL+ + + GK++H +R S VG ALI++
Sbjct: 401 RLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRS 460
Query: 311 TG----------------SFVWNSLI--------------------------DMYGRCGA 328
+ W S+I D G
Sbjct: 461 GSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGV 520
Query: 329 IQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+ +G YF +MK +N+EP Y CM+DLL RAG ++ NF++ MP EP
Sbjct: 521 LSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEP 580
Query: 382 ------SSAEPCNP----DIAEHAARHLFELEPLSSG----------------------- 408
S C D+A+ AA L ++P +SG
Sbjct: 581 DVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRK 640
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA 448
KVH F D H I + +++ EIKK+G++ +
Sbjct: 641 SMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNS 700
Query: 449 C--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
HSEKLA+AF LI+T + +R++KNLR+C DCHS +Y+S
Sbjct: 701 VLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLV- 759
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D RFHHF DG+CSC DYW
Sbjct: 760 ---EREIIVRDATRFHHFKDGSCSCQDYW 785
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 128/281 (45%), Gaps = 62/281 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+++P+ + SWT+M+ YN LG ++ V+ F ++ G V +C+ +
Sbjct: 101 VFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQA 160
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
VGK V+ +++ + G V +L+M+ KCG MA F+ + S
Sbjct: 161 LDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTW------ 214
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
N+++ + + +A F ++ +VSWN+++ GY G+
Sbjct: 215 -----------------NTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGY 257
Query: 231 REEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
ALE FS M++ + ++P+ +L VL+ACA + KLGK+IH +++
Sbjct: 258 DIR------------ALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
R + ++ VG N+LI MY + GA++
Sbjct: 306 RADVDIAGAVG----------------NALISMYAKSGAVE 330
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 42/227 (18%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ IH +K + + N+L++ Y K AH F ++ K SWN +L+ +A
Sbjct: 31 GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90
Query: 227 LGG-------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G + I G+ G ++A+ F RM+ + + P + +
Sbjct: 91 KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VLA+CA + +GK++H +V++ + S V +A NSL++MY +CG
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVK--LGQSGVVPVA--------------NSLLNMYAKCG 194
Query: 328 AIQKNEGWRYFEMMK----KEYNMEPAMEQYCCMVDL-LARAGQFDD 369
F+ M+ +N +M C DL LA Q D
Sbjct: 195 --DSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD 239
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 176/653 (26%), Positives = 272/653 (41%), Gaps = 196/653 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + C +L++LE G +VH+H+I G E F+ +F++
Sbjct: 113 TFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDES 172
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
R++ S+ +M+ Y + E + LF + + G+ + CS L + VGK
Sbjct: 173 LVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232
Query: 116 D----VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
VY + SI + N +K ++DM+ KCG + +A E+ FS + K
Sbjct: 233 QIHAQVYKNLRSI--DSNILLKSAIVDMYAKCGLINIA-----ERVFSTMGTSKSAAAW- 284
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+S++ YA+C + VA F+ + ++ ++SW AM++GY
Sbjct: 285 ----------------SSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGY------ 322
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI-HGYVLR 290
+Q G ALE F M ++P+ ++L VL+ACA++ F LGK + H Y+
Sbjct: 323 ------SQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIEN 376
Query: 291 HHIQLSTGVGIALISI------------------QGLGTGSFVWNSLID----------- 321
+T + A++ + + + TG FV+NS+I
Sbjct: 377 GVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTG-FVFNSMIAGLAQHGLGETA 435
Query: 322 ------------------------MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
G G I+ EG + FE M Y ++P ME Y CM
Sbjct: 436 ITVFRELISTGLKPDEVTFVGVLCACGHSGLIE--EGKKLFESMFNAYGIKPQMEHYGCM 493
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--- 404
VDLL R G ++ + ++KMPFE +S C N I E A + L E+E
Sbjct: 494 VDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHG 553
Query: 405 -----LSS-----------------------------------GKVHSFIAGDTSHSLVH 424
LS+ G +H F+A D SH
Sbjct: 554 ARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGK 613
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I L + +K GY+ K HSEKLALAFGL+ SP +
Sbjct: 614 EIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTI 673
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R++KNLR+C DCH K VS+ REI + D RFHHF +G+CSC D+W
Sbjct: 674 RIVKNLRICADCHKAFKLVSEIYG----REITVRDTMRFHHFRNGSCSCMDFW 722
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 159/390 (40%), Gaps = 116/390 (29%)
Query: 41 GIQVHAHLIVCG-----------VELCAFLG----------MFEKMPERNVFSWTSMMGM 79
G+Q+HA IV G + + LG +F ++ N+F W +M+
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84
Query: 80 YNVLGYYEEIVNLFYLLIDEGV-----------YKACSELKDHRVGKDVYDYMISIKFEG 128
Y+ E + L+ +I +G+ +C+ L G +V+ ++I FE
Sbjct: 85 YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEE---KD---------------------------- 157
+ V+ ++ ++ G + +A F+E +D
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204
Query: 158 --------------FSNLSLLKH---GKEIHPHHLKK-DDLESDLLVNNSLMDFYAKCRY 199
FS S+L GK+IH K ++S++L+ ++++D YAKC
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264
Query: 200 LKVAHCKFSKI-KQKHLVSWNAMLAGYALGG-------------------FREEITGFTQ 239
+ +A FS + K +W++M+ GYA G + I+G++Q
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQ 324
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G ALE F M ++P+ ++L VL+ACA++ F LGK + +H + GV
Sbjct: 325 AGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRL------YHQYIENGV 378
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ + +++DMY +CG+I
Sbjct: 379 ---------FNQNTILTAAVMDMYAKCGSI 399
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 154/548 (28%), Positives = 228/548 (41%), Gaps = 142/548 (25%)
Query: 101 VYKACSELKDHRVGKDV--YDYMISIKFE----GNACVKRPVLDMFIKCGRMEMASGEFE 154
+Y C ++KD R+ ++ YD +I + F + ++F++ R + E+
Sbjct: 307 MYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366
Query: 155 EKDF----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210
+N+ L GK+IH H +K ESDL V N+LMDFYAKC + + FS +
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGH-ESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425
Query: 211 KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ + VSWN + + GF+Q G GE AL F M M ++ S VL
Sbjct: 426 RDANEVSWNTI------------VVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLR 473
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS--------------IQGLGTGSFV- 315
ACA + +IH + + T +G +LI Q L +
Sbjct: 474 ACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIIS 533
Query: 316 WNSLIDMYGRCGAIQK---------------------------------NEGWRYFEMMK 342
WN++I Y G N G F+ M+
Sbjct: 534 WNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMR 593
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIA 392
++ ++P+ME Y C+V LL RAG+ +D L F+ +P PS+ C N +
Sbjct: 594 IDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALG 653
Query: 393 EHAARHLFELEP--------LSS-----------------------------------GK 409
+A + E+EP LS+ G+
Sbjct: 654 RFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGE 713
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKL 455
+H+F G H + I+ L L + + GY+ I HSE+L
Sbjct: 714 IHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERL 773
Query: 456 ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
ALA+GL+ T PG P+R++KNLR C DCH+ +SK K REII+ D RFHHF DG
Sbjct: 774 ALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVK----REIIVRDINRFHHFEDG 829
Query: 516 ACSCGDYW 523
CSCGDYW
Sbjct: 830 KCSCGDYW 837
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 123/325 (37%), Gaps = 89/325 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MPERN+ S+ +++ + G +E LF L EG + K +
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
+ V+ + + NA V ++D + C + A F
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237
Query: 154 -EEKD---------------------FSNLSLLKH---------GKEIHPHHLKK-DDLE 181
E D F+ S+LK GK IH +K +D E
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
V +L+D YAKC +K A F I ++ + M++ YA Q
Sbjct: 298 PH--VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYA------------QSN 343
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
E A E F R++++ + PN SLS VL AC + GK+IH + ++
Sbjct: 344 QNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIK----------- 392
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRC 326
G + FV N+L+D Y +C
Sbjct: 393 -----IGHESDLFVGNALMDFYAKC 412
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 151/566 (26%), Positives = 238/566 (42%), Gaps = 147/566 (25%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
+ ++C+ + ++G+ + ++ + FE + ++ +LD + K G ++ A F +
Sbjct: 16 ILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRD 75
Query: 161 L--------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
+ +L KHG +L + E + NS++ Y K + A F
Sbjct: 76 VVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFDCNPV 135
Query: 213 KHLVSWNAMLAGYA--------------LGGFREEIT------GFTQYGDGETALEFFSR 252
K +VSWNA++ GY +G R +T + Q G+ TA+ F +
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI------ 306
M +++P +++ +L+ACA + +G+ IHGY+ +++ +G ALI +
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255
Query: 307 --------QGLGTGS-FVWNSLIDMYGRCGAIQK-------------------------- 331
GL + F WNS+I G G ++
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315
Query: 332 -------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ G RYF M Y +EP +E Y CMVDLL RAG + L ++ MP +P+S
Sbjct: 316 CSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSM 375
Query: 385 ------EPC----NPDIAEHAARHLFELEPLSSGK------------------------- 409
C + + E + L EL+P G
Sbjct: 376 VLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMI 435
Query: 410 ------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC-- 449
VH F+AGDTSH +I+ L + E+K G++
Sbjct: 436 KRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLH 495
Query: 450 ------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRER 497
HSE++A+AFGL+ST PG +RV+KNLR C DCHS K +S A K
Sbjct: 496 DIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFK--- 552
Query: 498 EREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF +G+CSC DYW
Sbjct: 553 -REIIVRDRKRFHHFRNGSCSCNDYW 577
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 256/609 (42%), Gaps = 171/609 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK--DVY 118
+ ++MP+++ +WT+M V+GY + G A + + GK V+
Sbjct: 225 VLDEMPDKDDLTWTTM-----VVGY-----------VRRGDVNAARSVFEEVDGKFDVVW 268
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIH 171
+ MIS + C D F RM +E F+ N HGK +H
Sbjct: 269 NAMISGYVQSGMCA-----DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 323
Query: 172 PHHLKKDD---LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++ E+ L VNN+L+ Y+K + +A F + K +VSWN +L+GY
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 383
Query: 229 GFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
G ++ ++G+ G E AL+ F++M D++P + +G +
Sbjct: 384 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 443
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSF 314
AAC ++ K G+++H ++++ + S G AL+++ S
Sbjct: 444 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 503
Query: 315 VWNSLIDMYGRCG---------------------------------AIQKNEGWRYFEMM 341
WN++I G+ G A +EG+ YFE M
Sbjct: 504 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 563
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI-- 391
K+++ + P + Y ++DLL R+G+ + + +K MPFEP+ S N D+
Sbjct: 564 KRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEF 623
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
+AA LF + P G
Sbjct: 624 GAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGS 683
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
K+H F+ GDT H ++ + L + + ++K+GY+ K HSEK
Sbjct: 684 KIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEK 743
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+ FGL+ PG+ + V+KNLR+CGDCH+ ++SKA REI++ D RFHHF D
Sbjct: 744 LAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVG----REIVVRDVRRFHHFKD 799
Query: 515 GACSCGDYW 523
G CSCG+YW
Sbjct: 800 GECSCGNYW 808
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----AFLGMFE 63
L M + C TYA C +L L+ G Q+HAHL+ CG E A L M+
Sbjct: 423 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 482
Query: 64 K-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
K MP + SW +M+ G+ E + LF ++ EG+
Sbjct: 483 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGI 533
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 163/636 (25%), Positives = 250/636 (39%), Gaps = 191/636 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE----LKDH-RVG- 114
+F+ M +R+V SW +M+G G E +F + EG + L H G
Sbjct: 291 VFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGA 350
Query: 115 ----KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------- 163
K+V+ + + + + V + M+I+CG ++ A F++ N++
Sbjct: 351 WEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGG 410
Query: 164 -----------------------------------------LKHGKEIHPHHLKKDDLES 182
L+ KE+H + + D
Sbjct: 411 VAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAI--DAGLV 468
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL V N+L+ YAKC A F + ++++ +W M I+G Q+G
Sbjct: 469 DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVM------------ISGLAQHGC 516
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G A F +M++ + P+ + +L+ACA + KE+H + + + VG A
Sbjct: 517 GHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNA 576
Query: 303 LISIQG---------------LGTGSFVWNSLIDMYGRCG-------------------- 327
L+ + L + W +I + G
Sbjct: 577 LVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPN 636
Query: 328 -------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
A +EG R F + ++Y +EP ME Y CMVDLL RAGQ ++ +F+
Sbjct: 637 GYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFI 696
Query: 375 KKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG---------------- 408
MP EP A C N ++AE AA+ +L+P S+
Sbjct: 697 LNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWE 756
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
++HSF+ GDTSH +I KL L +K G
Sbjct: 757 QKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEG 816
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K C HSEKLA+ +GL+ T +P+RV KNLR+C DCH+ TK
Sbjct: 817 YVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATK 876
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK REI+ D RFHHF DG CSCGDYW
Sbjct: 877 FISKVTG----REIVARDAKRFHHFKDGVCSCGDYW 908
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/395 (23%), Positives = 154/395 (38%), Gaps = 109/395 (27%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM---------- 61
P+E +TY I + C +L+ G ++HAH+I G + A + M
Sbjct: 27 QPNE--ITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDA 84
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----YKACSELKDHRVG 114
F+KM ERNV SWT M+G G +E + F + EG Y S L +
Sbjct: 85 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASA 144
Query: 115 ------KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLL- 164
K+V+ + ++ + V ++ M+ K G ++ A F+ E+D + +++
Sbjct: 145 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI 204
Query: 165 ----KHG------------------------------------------KEIHPHHLKKD 178
+HG KE+H H K
Sbjct: 205 GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKH-AGKA 263
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
SDL V N+L+ YAKC + A F + + ++SWNAM+ G A
Sbjct: 264 GFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLA------------ 311
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q G G A F +M Q P++ + +L ++ KE+H +H +++
Sbjct: 312 QNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH----KHAVEV--- 364
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
GL + V ++ + MY RCG+I +
Sbjct: 365 ---------GLVSDLRVGSAFVHMYIRCGSIDDAQ 390
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 36/214 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GK+IH H + + +SD+ V +L++ Y KC + A F K+ +++++SW M+
Sbjct: 46 LKWGKKIHAH-IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
G A YG G+ A F +M + PN+ + +L A A + KE
Sbjct: 105 GLA------------HYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 152
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H + + + L VG N+L+ MY + G+I ++ F+ M
Sbjct: 153 VHSHAVNAGLALDLRVG----------------NALVHMYAKSGSI--DDARVVFDGM-- 192
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+E + + M+ LA+ G+ + + +M
Sbjct: 193 ---VERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 223
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 89/314 (28%)
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIK 125
M+G Y GY E+ + ++ + EG + KAC + GK ++ ++I
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEE------------------------------ 155
F+ + V+ +++M++KCG ++ A F++
Sbjct: 61 FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120
Query: 156 ---------KDFSNLSLLKHG---------KEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
++ +S+L KE+H H + L DL V N+L+ YAK
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNA-GLALDLRVGNALVHMYAKS 179
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ A F + ++ + SW M+ G A Q+G G+ A F +M +
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLA------------QHGRGQEAFSLFLQMERGG 227
Query: 258 MQPNTISLSGVLAACA--QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
PN + +L A A + KE+H + + G + V
Sbjct: 228 CLPNLTTYLSILNASAITSTGALEWVKEVHKHAGK----------------AGFISDLRV 271
Query: 316 WNSLIDMYGRCGAI 329
N+LI MY +CG+I
Sbjct: 272 GNALIHMYAKCGSI 285
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 28/196 (14%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G+ +YG E A++ +S+M + QPN I+ +L AC K GK+IH ++++
Sbjct: 2 IGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGF 61
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
Q V A L++MY +CG+I ++ F+ M +E +
Sbjct: 62 QSDVRVETA----------------LVNMYVKCGSI--DDAQLIFDKM-----VERNVIS 98
Query: 354 YCCMVDLLARAGQFDDTLNF---MKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKV 410
+ M+ LA G+ + + M++ F P+S + A +A L ++ + S V
Sbjct: 99 WTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 158
Query: 411 HSFIAGD--TSHSLVH 424
++ +A D ++LVH
Sbjct: 159 NAGLALDLRVGNALVH 174
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 238/578 (41%), Gaps = 175/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ER+V SW ++ VLG C+E H
Sbjct: 126 VFDEMIERDVVSWNTL-----VLG--------------------CAEEGRHHEALGFVRK 160
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M F ++ VL +F +C +K G E+H + +
Sbjct: 161 MCREGFRPDSFTLSTVLPIFAECAD------------------VKRGLEVHGFAFR-NGF 201
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+SD+ V +SL+D YA C + F + + + WN++LAG A Q
Sbjct: 202 DSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCA------------QN 249
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL----RHHIQLS 296
G E AL F RM+Q ++P ++ S ++ C + + GK++H YV+ ++ +S
Sbjct: 250 GSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFIS 309
Query: 297 TG----------VGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK-------------- 331
+ + IA + + V W ++I Y G ++
Sbjct: 310 SSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAK 369
Query: 332 -------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
++GW+YF+ M Y + P +E + + D L RAG+ D+ N
Sbjct: 370 PNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYN 429
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
F+ KM +P+++ C N +AE A+ + ELEP S G
Sbjct: 430 FISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGR 489
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K+H F+A D SH +I + L ++ +
Sbjct: 490 WNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAR 549
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G++ K CGHSEKLA+ FG+IST G+ +RV+KNLR+C DCH+
Sbjct: 550 EGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTV 609
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK +REI++ D RFHHF DG CSCGD+W
Sbjct: 610 TKFISKLA----DREIVVRDANRFHHFKDGNCSCGDFW 643
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 48/190 (25%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK--CRYLKVAHCK------- 206
K + L L G +H ++ +D N+L++ Y K C YL
Sbjct: 58 KSCAALGLSALGASLHALAIRSGAF-ADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGS 116
Query: 207 ----------FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
F ++ ++ +VSWN ++ G A G E GF + +M +
Sbjct: 117 STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVR------------KMCRE 164
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
+P++ +LS VL A+ K G E+HG+ R+ G + FV
Sbjct: 165 GFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRN----------------GFDSDVFVG 208
Query: 317 NSLIDMYGRC 326
+SLIDMY C
Sbjct: 209 SSLIDMYANC 218
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 176/670 (26%), Positives = 277/670 (41%), Gaps = 183/670 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------L 59
P+E +++ + C L + G +H +LI G + F +
Sbjct: 256 PNEFSLSS--MVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF------------------YLLIDEGV 101
+FEK+ + ++ SW +++ + ++E+ + L L + G+
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGL 373
Query: 102 ---YKACSELKDHRVG------KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152
Y C L+D R+ KD+ + I L +F++ + + +
Sbjct: 374 VDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQ 433
Query: 153 FEE----KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
K + L ++ +++H +K SD+ V NSL+D Y KC +++ A F
Sbjct: 434 TTLSTILKSTAGLQVVHVCRQVHGLSVKSG-FHSDIYVVNSLIDSYGKCSHVEDAERIFE 492
Query: 209 KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
+ LVS+ +M+ YA QYG GE AL+ F M +++P+ S +
Sbjct: 493 ECTIGDLVSFTSMITAYA------------QYGQGEEALKLFLEMQDMELKPDRFVCSSL 540
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQGLGT--------GS 313
L ACA + F+ GK++H ++L++ L G +L+ SI G G
Sbjct: 541 LNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGI 600
Query: 314 FVWN--------------------------------SLIDMYGRCG-AIQKNEGWRYFEM 340
W+ +L+ + G C A E YFE
Sbjct: 601 VSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFES 660
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS--------AEPCNPDI- 391
M++ + +P E Y CM+DLL RAG+ ++ + + KMPFE ++ A + D+
Sbjct: 661 MEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVE 720
Query: 392 -AEHAARHLFELEPLSSG------------------------------------------ 408
AA LF LEP SG
Sbjct: 721 LGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVK 780
Query: 409 -KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSE 453
KV++F+ GD SH +I KL L + K GY+ K + HSE
Sbjct: 781 DKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSE 840
Query: 454 KLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513
KLA+AFGLI+T G+P+RV KNLR+C DCH+ KY+ K REII+ D RFHHF
Sbjct: 841 KLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKI----VSREIIVRDINRFHHFK 896
Query: 514 DGACSCGDYW 523
DG+CSCGDYW
Sbjct: 897 DGSCSCGDYW 906
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 185/409 (45%), Gaps = 86/409 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T++ + + C + +L +G QVH ++V G E F+ +F+++
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
PERNV SW ++ Y + E V LFY ++ G+ AC+ L+D GK
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIHP 172
++ Y+I + ++ + ++DM+ K G + A FE + D + + + G +H
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338
Query: 173 HH-----------------LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
HH L K D+ESDL V+ L+D Y+KC L+ A F+ + +K L
Sbjct: 339 HHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 398
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
++WNA+++GY +QY + AL F M + + N +LS +L + A +
Sbjct: 399 IAWNAIISGY------------SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 446
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ + +++HG ++ G + +V NSLID YG+C ++ E
Sbjct: 447 QVVHVCRQVHGLSVK----------------SGFHSDIYVVNSLIDSYGKCSHVEDAE-- 488
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF---MKKMPFEP 381
R FE E + + + M+ A+ GQ ++ L M+ M +P
Sbjct: 489 RIFE----ECTIGD-LVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 532
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/357 (22%), Positives = 139/357 (38%), Gaps = 92/357 (25%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------- 54
T +L +D N +V+Y+ + +C +L G+Q+HAH+ G+
Sbjct: 39 QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98
Query: 55 ----LCAFLGMFEKM----PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
C G K+ E ++ SW++++ Y G + G A
Sbjct: 99 NLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNG------------LGGGALMAFH 146
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
E+ H +G ++ S + + VK L+
Sbjct: 147 EM--HLLGVKCNEFTFSSVLKACSIVKD-----------------------------LRI 175
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H + E D+ V N+L+ YAKC + F +I ++++VSWNA+ + Y
Sbjct: 176 GKQVHGV-VVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
F E G F M+ + ++PN SLS ++ AC ++ GK IHG
Sbjct: 235 QXDFCGEAVG------------LFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
Y+++ G F N+L+DMY + G + + FE +K+
Sbjct: 283 YLIK----------------LGYDWDPFSANALVDMYAKVGDLA--DAISVFEKIKQ 321
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
L +Q M+L PD + L C L+ E G Q+H H++ G L F G
Sbjct: 523 LEMQDMEL-KPDRFVCSSLL--NACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMY 579
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
F ++ ER + SW++M+G G+ + + LF ++ EGV
Sbjct: 580 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 250/591 (42%), Gaps = 206/591 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+F++MP+RNV SWT+M+ Y+ +++ + L L++ + V ++C+ + D
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD 177
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
R+ ++ +I E + V+ ++D+F K G E A F+E
Sbjct: 178 VRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGG 234
Query: 156 ---------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ + L+LL+ G + H H +K D
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD---Q 291
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL++NN+L+D Y KC L+ A F+++K++ +++W+ M++G A G+ +E
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQE--------- 342
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F RM + +PN I++ GVL AC+ H L
Sbjct: 343 ---ALKLFERMKSSGTKPNYITIVGVLFACS------------------HAGL------- 374
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L G + + S+ +YG ++P E Y CM+DLL
Sbjct: 375 ------LEDGWYYFRSMKKLYG----------------------IDPVREHYGCMIDLLG 406
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG---- 408
+AG+ DD + + +M EP + C N +AE+AA+ + L+P +G
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H+FI GD SH + ++S+K
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKK 526
Query: 430 LMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRV 472
L +L + IGY +P HSEKLALAFGL++ +R+
Sbjct: 527 LNQLIHRLTGIGY---VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH K SK E R I++ D R+HHF DG CSCGDYW
Sbjct: 584 RKNLRICGDCHVFCKLASKLEI----RSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ Y K L AH F ++ Q++++SW M++ Y+ ++ AL
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK------------AL 147
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E M++ +++PN + S VL +C + ++ +H +++ +
Sbjct: 148 ELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIK----------------E 188
Query: 308 GLGTGSFVWNSLIDMYGRCG 327
GL + FV ++LID++ + G
Sbjct: 189 GLESDVFVRSALIDVFAKLG 208
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV-----------------CGVELCAFLGMFEKMP 66
T + + C L LELG+Q H H++ CG L L +F +M
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCG-SLEDALRVFNQMK 320
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
ER+V +W++M+ GY +E + LF + G
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 256/659 (38%), Gaps = 223/659 (33%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLE---LGIQVHAHLIVCGVELCAFLGMF-------- 62
D PD+ T+ A + + C + E LG QVH + I CG+ +F+
Sbjct: 989 DGLKPDQFTL--ASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG 1046
Query: 63 EKMPER----------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------Y 102
KM E ++ SW ++M Y + + F L+ + G+
Sbjct: 1047 GKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---------------- 146
KA L + + GK + Y I + F + V VLDM+IKCG M
Sbjct: 1107 KASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEV 1166
Query: 147 ---EMASGEFEEKD-----------------------------FSNLSLLKHGKEIHPHH 174
M SG E D S L+ L+ GK+IH +
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV 1226
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K D D V SL+D Y KC ++ A+ F K+ + +V WNAML G A
Sbjct: 1227 VKLD-YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA-------- 1277
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q+G + AL F M +QP+ ++ GVL+AC+
Sbjct: 1278 ----QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSH-------------------- 1313
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
+G F +E ++YF+ M K Y + P +E Y
Sbjct: 1314 ----------------SGLF-----------------SEAYKYFDAMFKTYGITPEIEHY 1340
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEP 404
C+VD L RAG+ + N + MPF+ S++ + + A+ A L L+P
Sbjct: 1341 SCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDP 1400
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
S KVH F+ D SH
Sbjct: 1401 SDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHP 1460
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLIST 464
I EK+ L I++ G +P HSEKLA+AFGLIST
Sbjct: 1461 QASLIYEKIEDLMKRIREEG--SYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLIST 1518
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P + +RVIKNLR+CGDCHS K +SK +REI++ D RFHHF +G CSCGDYW
Sbjct: 1519 PPSATIRVIKNLRVCGDCHSAIKCISKLT----QREIVLRDANRFHHFRNGTCSCGDYW 1573
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 131/350 (37%), Gaps = 83/350 (23%)
Query: 38 LELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGM 79
+++ VH + + G EL F+ +F+KMPER+ W M+
Sbjct: 733 VQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA 792
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSEL-------------KDHRVGKDVYDY---MIS 123
Y + +E + F G + S L R + V Y M
Sbjct: 793 YVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFP 852
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------KDFSNLSL----------LKH 166
N L F+ G++ A F+ D L + L
Sbjct: 853 FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDL 912
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH +K + V+NSLM+ Y+K + A F + L+SWN M++ YA
Sbjct: 913 GEQIHALVIKSS-FAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA---QVKGFKLGKE 283
E A+ F +++ ++P+ +L+ VL AC+ + + F LG +
Sbjct: 972 QNNLEME------------AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ 1019
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+H Y ++ G+ SFV +LID+Y + G + + E
Sbjct: 1020 VHVYAIK----------------CGIINDSFVSTALIDLYSKGGKMDEAE 1053
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GK H + DL L NN L+ Y+KC L A F K + LV+WN++LA
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNN-LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 224 GYAL---GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
YA + + GF +G L F I T + + +L+ QV
Sbjct: 686 AYAQFADSSYENVLEGFRLFG----LLREFGFSI-TRLTLAPLLKLCLLSGFVQVS---- 736
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISI 306
+ +HGY ++ +L V AL++I
Sbjct: 737 -ETVHGYAVKIGFELDLFVSGALVNI 761
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 73/258 (28%)
Query: 35 LNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMPERNVFSWTSM 76
+ +L+LG + HA ++ G LC+ +F+K +R++ +W S+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683
Query: 77 MGMYNVLG--YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ Y YE ++ F L + + F
Sbjct: 684 LAAYAQFADSSYENVLEGFRL----------------------FGLLREFGFSITRLTLA 721
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
P+L + + G F +S HG + K E DL V+ +L++ Y
Sbjct: 722 PLLKLCLLSG-------------FVQVSETVHGYAV------KIGFELDLFVSGALVNIY 762
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
K + A F K+ ++ V WN ML Y F++E AL FFS
Sbjct: 763 CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE------------ALRFFSAFH 810
Query: 255 QTDMQPNTISLSGVLAAC 272
++ P+ +L V+
Sbjct: 811 RSGFFPDFSNLHCVIGGV 828
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 180/659 (27%), Positives = 256/659 (38%), Gaps = 223/659 (33%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLE---LGIQVHAHLIVCGVELCAFLGMF-------- 62
D PD+ T+ A + + C + E LG QVH + I CG+ +F+
Sbjct: 989 DGLKPDQFTL--ASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKG 1046
Query: 63 EKMPER----------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------Y 102
KM E ++ SW ++M Y + + F L+ + G+
Sbjct: 1047 GKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---------------- 146
KA L + + GK + Y I + F + V VLDM+IKCG M
Sbjct: 1107 KASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEV 1166
Query: 147 ---EMASGEFEEKD-----------------------------FSNLSLLKHGKEIHPHH 174
M SG E D S L+ L+ GK+IH +
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANV 1226
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K D D V SL+D Y KC ++ A+ F K+ + +V WNAML G A
Sbjct: 1227 VKLD-YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLA-------- 1277
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q+G + AL F M +QP+ ++ GVL+AC+
Sbjct: 1278 ----QHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSH-------------------- 1313
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
+G F +E ++YF+ M K Y + P +E Y
Sbjct: 1314 ----------------SGLF-----------------SEAYKYFDAMFKTYGITPEIEHY 1340
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEP 404
C+VD L RAG+ + N + MPF+ S++ + + A+ A L L+P
Sbjct: 1341 SCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDP 1400
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
S KVH F+ D SH
Sbjct: 1401 SDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHP 1460
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLIST 464
I EK+ L I++ G +P HSEKLA+AFGLIST
Sbjct: 1461 QASLIYEKIEDLMKRIREEG--SYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLIST 1518
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P + +RVIKNLR+CGDCHS K +SK +REI++ D RFHHF +G CSCGDYW
Sbjct: 1519 PPSATIRVIKNLRVCGDCHSAIKCISKLT----QREIVLRDANRFHHFRNGTCSCGDYW 1573
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 130/350 (37%), Gaps = 83/350 (23%)
Query: 38 LELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGM 79
+++ VH + + G EL F+ +F+KMPER+ W M+
Sbjct: 733 VQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA 792
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSEL-------------KDHRVGKDVYDY---MIS 123
Y + +E + F G S L R + V Y M
Sbjct: 793 YVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFP 852
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------KDFSNLSL----------LKH 166
N L F+ G++ A F+ D L + L
Sbjct: 853 FDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDL 912
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH +K + V+NSLM+ Y+K + A F + L+SWN M++ YA
Sbjct: 913 GEQIHALVIKSS-FAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYA 971
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA---QVKGFKLGKE 283
E A+ F +++ ++P+ +L+ VL AC+ + + F LG +
Sbjct: 972 QNNLEME------------AICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQ 1019
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+H Y ++ G+ SFV +LID+Y + G + + E
Sbjct: 1020 VHVYAIK----------------CGIINDSFVSTALIDLYSKGGKMDEAE 1053
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 14/146 (9%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GK H + DL L NN L+ Y+KC L A F K + LV+WN++LA
Sbjct: 627 LKLGKRAHARIVTSGDLPDRYLTNN-LITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685
Query: 224 GYAL---GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
YA + + GF +G L F I T + + +L+ QV
Sbjct: 686 AYAQFADSSYENVLEGFRLFG----LLREFGFSI-TRLTLAPLLKLCLLSGFVQVS---- 736
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISI 306
+ +HGY ++ +L V AL++I
Sbjct: 737 -ETVHGYAVKIGFELDLFVSGALVNI 761
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/258 (20%), Positives = 92/258 (35%), Gaps = 73/258 (28%)
Query: 35 LNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMPERNVFSWTSM 76
+ +L+LG + HA ++ G LC+ +F+K +R++ +W S+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683
Query: 77 MGMYNVLG--YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ Y YE ++ F L + + F
Sbjct: 684 LAAYAQFADSSYENVLEGFRL----------------------FGLLREFGFSITRLTLA 721
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
P+L + + G F +S HG + K E DL V+ +L++ Y
Sbjct: 722 PLLKLCLLSG-------------FVQVSETVHGYAV------KIGFELDLFVSGALVNIY 762
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
K + A F K+ ++ V WN ML Y F++E AL FFS
Sbjct: 763 CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE------------ALRFFSAFH 810
Query: 255 QTDMQPNTISLSGVLAAC 272
++ P+ +L V+
Sbjct: 811 RSGFXPDFSNLHCVIGGV 828
>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
Length = 640
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 174/646 (26%), Positives = 259/646 (40%), Gaps = 216/646 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
YA I + C + G Q+HA L+V G+ L A L +F++M
Sbjct: 65 NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124
Query: 66 PER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRV 113
P + NVF W ++ Y G E + L+ ++ G V KAC+ L D
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------------- 160
G++V+D ++ + + V ++DM+ KCG ++ A F+ +
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244
Query: 161 -------LSL----------------------------LKHGKEIHPHHLKKDDLESDLL 185
L+L L G+E+H + ++ D L
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKL 304
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
SL+D YAK ++ VA F ++ + L+SWNAM I GF +G +
Sbjct: 305 -KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAM------------ICGFGMHGHADH 351
Query: 246 ALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A E F RM + + P+ I+ GVL+AC HG
Sbjct: 352 ACELFRRMRNEAQVMPDHITFVGVLSACN-----------HG------------------ 382
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
G +Q E F++M Y+++P ++ Y C+VD+L +
Sbjct: 383 ----------------------GMVQ--EAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHS 418
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------ 408
G+F + + +K M +P S C N ++AE A L ELEP +G
Sbjct: 419 GRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLS 478
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
K H F+ GD SH +I E+L
Sbjct: 479 NIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELE 538
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
RL I + GY+ KR GHSE+LA+AFGLIST PG+ L V KNLR
Sbjct: 539 RLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLR 598
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH K +S+ E +REII+ D R+HHFV+G CSC D+W
Sbjct: 599 VCEDCHVVIKLISQIE----QREIIIRDVNRYHHFVNGECSCKDHW 640
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 170/692 (24%), Positives = 275/692 (39%), Gaps = 209/692 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
TY + + C L +E G+++H+H + G+E F+ +F M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
R+V +W +M+ ++ G ++ V L + +EG V E K GK
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------------- 160
++ Y + F+ V +LDM+ KC + A F+ N
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASD 290
Query: 161 ----------------------------------LSLLKHGKEIHPHHLKKDDLESDLLV 186
L+ L G+++H + +K + D+L+
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSV-LDILL 349
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L+ YAKC + A F ++ K VS++A+ ++G Q G+ A
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAI------------VSGCVQNGNAAVA 397
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L F M + + P+ ++ GVL AC+ + + G HGY++ T + ALI +
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457
Query: 307 -QGLGTGSFV--------------WNSLIDMYGRCGAIQKN------------------- 332
G SF WN++I YG G +
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517
Query: 333 --------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EG +F+ M +++++ P ME CMVD+L RAG D+ +F++ MP
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577
Query: 379 FEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK------------------- 409
FEP + C N ++ E ++ + L P S+G
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAH 637
Query: 410 ------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
VH+F+ GD SH + +I+ KL L E+K++GY
Sbjct: 638 IRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAE 697
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEKLA+AFG+++ G P+ V KNLR+CGDCH+ K+++
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTL 757
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI + D RFHHF +G C+CGD+W
Sbjct: 758 ITK----REITVRDANRFHHFKNGTCNCGDFW 785
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 43/239 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K+IH H LK +D V + L Y C + +A F +I ++ WN ++
Sbjct: 24 LTEAKKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIR 82
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
YA G + A++ + M+ ++PN + VL AC+ + + G E
Sbjct: 83 AYAWN------------GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK- 342
IH + + GL + FV +L+D Y +CG + E R F M
Sbjct: 131 IHSHA----------------KMFGLESDVFVCTALVDFYAKCGILV--EAQRLFSSMSH 172
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSAEPCN--PDIAEHAA 396
++ AM C + G DD + + +M E P+S+ P + E A
Sbjct: 173 RDVVAWNAMIAGCSLY------GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKA 225
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 122/301 (40%), Gaps = 40/301 (13%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------ 60
D VT + + C KL +L G ++H ++I G L LG
Sbjct: 309 DPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIR 368
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----IDE------GVYKACSELKD 110
F++M ++ S+++++ G +++F ++ ID GV ACS L
Sbjct: 369 FFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAA 428
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHG 167
+ G + Y+I F + + ++DM+ KCG++ A F + D + + + G
Sbjct: 429 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 488
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
IH ++ L DLL D L + C S + + + ++AM +++
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLL--SSCSHSGLVMEGRLWFDAMSRDFSI 546
Query: 228 GGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
E + + G + A F M +P+ S +L+AC K +LG+E
Sbjct: 547 VPRMEHCICMVDILGRAGLIDEAHHFIRNM---PFEPDVRIWSALLSACRIHKNIELGEE 603
Query: 284 I 284
+
Sbjct: 604 V 604
>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
Length = 675
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 160/588 (27%), Positives = 245/588 (41%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+FE+MP R+V SWTSM+G ++ G EE + +F ++ GV AC+ +
Sbjct: 158 LFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVE 217
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN---------- 160
+G V+ +++ + + + ++ + C ++E A F E N
Sbjct: 218 FNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTA 277
Query: 161 --------------------------------------LSLLKHGKEIHPHHLKKDDLES 182
L L GKEIH +K LE+
Sbjct: 278 YVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIKLG-LET 336
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V NSL+ Y +C + A F I +K +VSWN+++ G A Q+G
Sbjct: 337 DVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSA------------QHGF 384
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL FF++MI+ + PN I+ +G+L+AC++ G +L+
Sbjct: 385 GLWALIFFNQMIRRGVDPNEITFTGLLSACSR----------SGMLLK------------ 422
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GRC +FE + + + + Y CMVD+L
Sbjct: 423 ---------------------GRC----------FFEYISRYKSNVLRPQHYACMVDILG 451
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----- 407
R G+ D+ ++ MP + +S C N ++AE AA+H+ +LEP S
Sbjct: 452 RCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVL 511
Query: 408 --------------------------------------GKVHSFIAGDTSHSLVHKISEK 429
GK H F++ D SH L +I EK
Sbjct: 512 LSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEK 571
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L ++K+ GY+ K HSE+LA+AFGL+ST GS + V+KN
Sbjct: 572 LDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKN 631
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCHS K +SK R+I++ D+ RFHHF +G CSC DYW
Sbjct: 632 LRVCGDCHSVIKLMSKIVG----RKIVVRDSGRFHHFKNGICSCSDYW 675
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 78/285 (27%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVE---LCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
LIF + P N + ++ +I LC L +F++M R+V SW SM+
Sbjct: 33 LIFDKIPSPN-----LHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMI------ 81
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
K C + + + ++D M E N +++ ++K
Sbjct: 82 -------------------KGCLDCGNLGMATRLFDEMP----EKNVISWTTMVNGYLKF 118
Query: 144 GRMEMASGEFEE---KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
GR+E+A F + KD + + + HG + + +E + +
Sbjct: 119 GRVELAQRLFLDMHVKDVAAWNAMVHG------YFENGRVEEGVRL-------------- 158
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
F ++ + ++SW +M+ G L G EE AL F +M+++ ++P
Sbjct: 159 ------FEEMPVRDVISWTSMIGGLDLNGKSEE------------ALFVFKKMLRSGVEP 200
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+ + VL+ACA F LG ++HG+V++ + ++LI+
Sbjct: 201 TWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLIT 245
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG--------VELCAFLG----------MFEKM 65
T+A + C LG+QVH H++ G V L F +F +
Sbjct: 204 TFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNET 263
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+NV WT+++ Y +++ + +F + G KAC L+ GK
Sbjct: 264 LTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGK 323
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIH 171
+++ I + E + V ++ M+ +CG + A F EKD + + + G H
Sbjct: 324 EIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQH 382
>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1724
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 148/476 (31%), Positives = 201/476 (42%), Gaps = 132/476 (27%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LLKHG IH H + ESD V NSL+ YAKC L ++ F + K ++WNAM+
Sbjct: 1266 LLKHGMPIHAH-IVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMV 1324
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
A A +G GE AL+ F M + + S SG LAA A + + G+
Sbjct: 1325 AANA------------HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQ 1372
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCG 327
++HG V++ + V A + + G + WN LI + R G
Sbjct: 1373 QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHG 1432
Query: 328 AIQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
QK +EG Y++ M +E+ + P +E
Sbjct: 1433 CFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHC 1492
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEP 404
C++DLL R+G+ F+K+MP P S C N ++A A HL EL+P
Sbjct: 1493 VCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDP 1552
Query: 405 -------------LSSGK------------------------------VHSFIAGDTSHS 421
+SGK VHSF G+ H
Sbjct: 1553 SDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHP 1612
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+IS KL L K+ GY+ K HSE+LALAFGLI+T
Sbjct: 1613 QASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPES 1672
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S LR+ KNLR+CGDCHS K+VS R+I++ D YRFHHF G CSCGDYW
Sbjct: 1673 STLRIFKNLRVCGDCHSVYKFVSGIVG----RKIVLRDPYRFHHFSGGKCSCGDYW 1724
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 123/539 (22%), Positives = 197/539 (36%), Gaps = 147/539 (27%)
Query: 5 NVTLLLQSMDL--TNPDECTVT-YALIFQRCPKLNNLELGIQVHAHLIVCGV-------- 53
N+ L +++ L +NP + Y I Q C + G +H HLI G
Sbjct: 10 NLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNT 69
Query: 54 ----------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-- 101
++ A +F+ MPER+V SWT+M+ Y+ G +E+ LF + GV
Sbjct: 70 KLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKA 129
Query: 102 --------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS--- 150
+AC+ L+ +G V + +F N VK ++D KCG+ME AS
Sbjct: 130 NQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLF 189
Query: 151 GEFEEKDFSNLSLLKHGKEIHPHH-------------------------LKKDDLESDLL 185
G E+D + + + G + L+ L+
Sbjct: 190 GTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLI 249
Query: 186 VNNS-------------------LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ N L++ YAK L+ A + +K L S A++ GYA
Sbjct: 250 IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYA 309
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G AL+ F M Q ++ + + L +L CA + F LG +IH
Sbjct: 310 HEGIYSV-----------DALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHA 358
Query: 287 YVLRHHIQLSTGVGIALISIQGLG---------------TGSFVWNSLIDMYGRCG---- 327
+ L++ +G ALI + W SLI Y + G
Sbjct: 359 FALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHM 418
Query: 328 -----------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMV 358
+ N EG F M +YN++P E Y CMV
Sbjct: 419 AVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMV 478
Query: 359 DLLARAGQFDDTLNFMKKMPFE----------PSSAEPCNPDIAEHAARHLFELEPLSS 407
DL AR G ++ N + K+ + +S+ + + AA +LF ++P +S
Sbjct: 479 DLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENS 537
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 141/363 (38%), Gaps = 105/363 (28%)
Query: 41 GIQVHAHLIVCGV--------ELCAFLG----------MFEKMPERNVFSWTSMMGMYNV 82
G QVH ++ G+ L F G +FE+MP+ NV SWTS+M Y+
Sbjct: 865 GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD 924
Query: 83 LGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACV 132
G E++N++ + EG V +C L+D +G V ++I FE + V
Sbjct: 925 SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 984
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNL------------------SL----------- 163
++ MF +E A F+ + ++ SL
Sbjct: 985 ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 1044
Query: 164 -------------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204
LK G+ IH +K L+S++ + N+L+ Y++ + A
Sbjct: 1045 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL-GLDSNVCICNTLLTLYSEAGRSEDAE 1103
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
F + ++ L+SWN+M+A Y Q G L+ + ++Q N ++
Sbjct: 1104 LVFQAMTERDLISWNSMMACY------------VQDGKCLDGLKILAELLQMGKVMNHVT 1151
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324
+ LAAC+ + K +H ALI + G V N+L+ MYG
Sbjct: 1152 FASALAACSNPECLIESKIVH----------------ALIIVAGFHDFLIVGNALVTMYG 1195
Query: 325 RCG 327
+ G
Sbjct: 1196 KLG 1198
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 72/301 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M RN SW++M+ Y +G YEE V LF + GV
Sbjct: 801 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGV------------------- 841
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
E N + V + C R SG ++ F ++H +K L
Sbjct: 842 ------EPNGFM---VASLITACSR----SGYMADEGF----------QVHGFVVKTGIL 878
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D+ V +L+ FY + A F ++ ++VSW +++ GY+ G E+
Sbjct: 879 -GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEV------ 931
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L + RM Q + N + + V ++C ++ LG ++ G+++++ + S V
Sbjct: 932 ------LNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVA 985
Query: 301 IALISI----QGLGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
+LIS+ + +V WN++I Y G + E R F M+ +
Sbjct: 986 NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCR--ESLRCFHWMRHLH 1043
Query: 346 N 346
N
Sbjct: 1044 N 1044
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 104/385 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+A + C L + LG QV H+I G E + +F+ M
Sbjct: 949 TFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 1008
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKDHRVGK 115
E ++ SW +M+ Y G E + F+ + + CS + + + G+
Sbjct: 1009 NECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR 1068
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLS---------- 162
++ ++ + + N C+ +L ++ + GR E A F+ E+D + +
Sbjct: 1069 GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDG 1128
Query: 163 -----------LLKHGKEIH-------------PHHLKKDDL----------ESDLLVNN 188
LL+ GK ++ P L + + L+V N
Sbjct: 1129 KCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGN 1188
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y K + A + Q V+WNA++ G+A + + A++
Sbjct: 1189 ALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHA------------ENEEPNEAVK 1236
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ + + + N I++ VL AC+ K G IH +++ +
Sbjct: 1237 AYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIV----------------LT 1280
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKN 332
G + +V NSLI MY +CG + +
Sbjct: 1281 GFESDDYVKNSLITMYAKCGDLNSS 1305
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
D I+C + + F K FS ++ GK +H + + + N+L++ Y+K
Sbjct: 738 DYGIRC----LNAVNFPLKGFSEITSQMAGKALHAFCIV-GSVNLGIFQTNTLINMYSKF 792
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
++ A F +++ ++ SW+ ML+GY G EE G F +M
Sbjct: 793 GNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVG------------LFCQMWGLG 840
Query: 258 MQPNTISLSGVLAACAQVKGFKL--GKEIHGYVLRHHIQLSTGVGIALISIQG 308
++PN ++ ++ AC++ G+ G ++HG+V++ I VG AL+ G
Sbjct: 841 VEPNGFMVASLITACSR-SGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYG 892
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 165/624 (26%), Positives = 255/624 (40%), Gaps = 173/624 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
TY + C +L ++LG + H ++ G ++F +++ Y+
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFG-------------SDLFVINALIQFYHNC 159
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G + ++F D +DV + I I N + D+ +
Sbjct: 160 GSFGCACDVF----------------DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203
Query: 144 GRME-MASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
+++ + E + L L+ GK +H + K+ L+ +L VNN+++D Y KC
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYS-KELGLDENLRVNNAILDMYCKCD 262
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
++ A F++I++K ++SW +ML+G A G+ +E AL F +M +
Sbjct: 263 DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQE------------ALALFQKMQLNKI 310
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS----- 313
+ + I+L GVL+ACAQ GK IH + + I + AL+ + GS
Sbjct: 311 ELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYA-KCGSIDLAL 369
Query: 314 -----------FVWNSLID---MYGR---------------------------CGAIQK- 331
F WN+LI M+G C
Sbjct: 370 QVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 429
Query: 332 --NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----- 384
+EG F+ MK ++ +EP ME Y C+VDLL RA + DD L F++ MP + +S
Sbjct: 430 LVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATL 489
Query: 385 -EPCNP----DIAEHAARHLFELEPLSSGK------------------------------ 409
C D+AE R + ELEP S G+
Sbjct: 490 LGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIE 549
Query: 410 -------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG------ 450
+H F+AGD SH +I + + + G +P
Sbjct: 550 KTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDG--GHVPGTANVLFDI 607
Query: 451 -----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
HSEKLA+A GLIST GSP+R++KNLR+C DCHS K SK R
Sbjct: 608 EEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKV----YNR 663
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
EI+ D RFHHF +G+CSC D+W
Sbjct: 664 EIVARDRSRFHHFKEGSCSCMDFW 687
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G+ + + A+ + M++ + + + VLAACA++ KLG+ H VL++
Sbjct: 83 IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN-- 140
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
G G+ FV N+LI Y CG+
Sbjct: 141 --------------GFGSDLFVINALIQFYHNCGS 161
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 165/591 (27%), Positives = 244/591 (41%), Gaps = 204/591 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + + C L L G Q+HA ++ G + ++ G+F++M
Sbjct: 130 TFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRM 189
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
ER++ SW ++ + G ++ +NLF G + E D Y +I+
Sbjct: 190 SERSLVSWNVVIDAFVRFGEFDAALNLF------GEMQKFFE-------PDGY----TIQ 232
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE--SD 183
NAC + + L G H LKK D + +D
Sbjct: 233 SIANAC---------------------------AGMGSLSLGMWAHVFLLKKFDADRVND 265
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+L+N SL+D Y KC L++A F ++ ++ + SWN+M I GF+ +G+
Sbjct: 266 VLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSM------------ILGFSTHGEV 313
Query: 244 ETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
ALE+F M++T+ + PN I+ GVL+AC HG
Sbjct: 314 AAALEYFGCMVRTEKLMPNAITFVGVLSACN-----------HG---------------G 347
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L+S EG RYF++M EY ++P +E Y C+VDLLA
Sbjct: 348 LVS---------------------------EGRRYFDVMVTEYKIKPELEHYGCLVDLLA 380
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC-----NPDIAEHAARHLFELE-------- 403
RAG D+ L+ + MP P S + C +++E AR + E E
Sbjct: 381 RAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVY 440
Query: 404 -------------------------------PLSS-----GKVHSFIAGDTSHSLVHKIS 427
P S G H F AGDTSH +I
Sbjct: 441 VLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIY 500
Query: 428 EKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
L + ++++GY K+ HSE+LA+AFGL+ T PG P+R+
Sbjct: 501 SALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRI 560
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C +CH TK +S R REII+ D RFHHF DGACSC DYW
Sbjct: 561 FKNLRVCNNCHQVTKLIS----RVFNREIIVRDRIRFHHFKDGACSCMDYW 607
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/507 (28%), Positives = 221/507 (43%), Gaps = 141/507 (27%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K SNLS + +IH H + K D+ NSL++ YA K AH F +I++
Sbjct: 115 FLLKACSNLSAFQETTQIHAH-ITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQE 173
Query: 213 KHLVSWNAMLAGYALGG--------FREE------------ITGFTQYGDGETALEFFSR 252
VSWN+++ GY G FR+ I+G+ Q G + AL+ F
Sbjct: 174 PDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHE 233
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI------ 306
M +++ P+ +SL+ L+AC+Q+ + GK IH Y + ++ + + LI +
Sbjct: 234 MQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGE 293
Query: 307 --------QGLGTGSF-VWNSLIDMYGRCG----AIQK---------------------- 331
+ + T S VW +LI Y G AI K
Sbjct: 294 MEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTA 353
Query: 332 -------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
EG F ++++YN++P +E Y CMVDLL RAG ++ F++KMP +P++
Sbjct: 354 CSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAV 413
Query: 385 ------EPC----NPDIAEHAARHLFELEPLSSGK------------------------- 409
+ C N ++ E L E++ G+
Sbjct: 414 IWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMR 473
Query: 410 ------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-------- 443
H F+AGD SH+ + +I K + ++++ GY+
Sbjct: 474 EQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLL 533
Query: 444 -------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
K HSEKLA+ +GL+ T PG+ +R++KNLR+C DCH +SK K
Sbjct: 534 DLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYK-- 591
Query: 497 REREIIMIDNYRFHHFVDGACSCGDYW 523
R+I+M D RFHHF DG CSCGDYW
Sbjct: 592 --RDIVMRDRTRFHHFKDGKCSCGDYW 616
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 171/606 (28%), Positives = 252/606 (41%), Gaps = 189/606 (31%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
L +F+++ N F W +MM Y E+ + L+ L++ + VG D Y
Sbjct: 83 LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK------------NNVGPDNY 130
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
Y + ++ AC R + EF GKEIH H LK
Sbjct: 131 TYPLVVQ----ACAVRLL---------------EF------------GGKEIHDHVLKVG 159
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------- 229
+SD+ V N+L++ YA C ++ A F + VSWN++LAGY G
Sbjct: 160 -FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAW 218
Query: 230 --FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
F E I+G+ Q G E AL F M M+ + + + VL+ACA +
Sbjct: 219 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 278
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI------------------QGLG-TGSFVWN 317
K GK IHG V+R I+ + ALI + G+ G WN
Sbjct: 279 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWN 338
Query: 318 SLI-------------DMY----------------GRCGAIQK----NEGWRYFEMMKKE 344
+LI DM+ G GA + +EG +F M ++
Sbjct: 339 ALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEK 398
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEH 394
+ +EP ++ Y CMVDLL RAG ++ ++ MP P A C + ++ E
Sbjct: 399 HGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGER 458
Query: 395 AARHLFELEP-------------------------------------------LSSGKVH 411
R L EL+P ++G VH
Sbjct: 459 VGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVH 518
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLAL 457
F+AGD +H ++K+ L + +K GY K HSEKLA+
Sbjct: 519 EFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAI 578
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFGL++ SP +P+R++KNLR+C DCH+ K +SKA REI++ D +RFH+F +GAC
Sbjct: 579 AFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKA----YAREIVVRDRHRFHYFKEGAC 634
Query: 518 SCGDYW 523
SC DYW
Sbjct: 635 SCMDYW 640
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 177/684 (25%), Positives = 273/684 (39%), Gaps = 205/684 (29%)
Query: 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVELCAFLG---------MFEKMP 66
PD TVT L C P L+ + + H+ VC L A+ +F +M
Sbjct: 352 PDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH 411
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------------------------- 100
+++ ++ +MM + G + + + LF + G
Sbjct: 412 DKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFV 471
Query: 101 ------VYKACSELKDHR------VGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRME 147
Y C L D R +D Y + I + N C VL +F E
Sbjct: 472 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAAT-VLRLF-----RE 525
Query: 148 MASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
M F+ + ++L GK+IH L L S+ L+ N+L+D Y+KC
Sbjct: 526 MQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQ-LVLLGLASEDLLGNALIDMYSKCG 584
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
L A FS +K +SW A+ ITG+ Q G E AL+ FS M + +
Sbjct: 585 MLDAAKSNFSNRSEKSAISWTAL------------ITGYVQNGQHEEALQLFSDMRRAGL 632
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------QGLG 310
+P+ + S ++ A + + LG+++H Y++R + S G L+ + + L
Sbjct: 633 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 692
Query: 311 T-------GSFVWNSLIDMYGRCG----AIQKNEGW------------------------ 335
T S WN++I Y G AI+ EG
Sbjct: 693 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 752
Query: 336 -----RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC--- 387
+YF +MK +Y++ P E Y C++D L R G F + +MPF+ A+P
Sbjct: 753 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFK---ADPIIWT 809
Query: 388 ----------NPDIAEHAARHLFELEPLSSG----------------------------- 408
N ++A AA LF +EP +
Sbjct: 810 SILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRG 869
Query: 409 --------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---- 450
K++SF + D + ++ +I ++L RLY E+ K GY I C
Sbjct: 870 VRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDI-TCALHMV 928
Query: 451 -----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
HSE+LA+AF L++T G+P+R++KNL C DCH+ K +SK R
Sbjct: 929 DHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVN----R 984
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
+II+ D+ RFHHF DG CSCGDYW
Sbjct: 985 DIIVRDSRRFHHFKDGVCSCGDYW 1008
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 68/339 (20%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P N L + + A+ +L A +F P RN +WT MM + G
Sbjct: 279 MFDQMPHKNIFSLNLILSAY--SSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTS 336
Query: 88 EIVNLFYLLIDEGV------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
+ ++LF ++ EGV L V ++ + I + + V +LD +
Sbjct: 337 DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-PSLHPFAIKFGLDTHVFVCNTLLDAYC 395
Query: 142 KCGRMEMASG---EFEEKDFSN---------------------LSLLKHGKEIHPHHL-- 175
K G + A E +KD ++ + G HP HL
Sbjct: 396 KHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQ 455
Query: 176 -----KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ ++ VNNSL+DFY+KC L F ++ ++ VS+N ++A YA
Sbjct: 456 YSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQC 515
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
T L F M + + + +L+ + +GK+IH
Sbjct: 516 ------------AATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIH----- 558
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
A + + GL + + N+LIDMY +CG +
Sbjct: 559 -----------AQLVLLGLASEDLLGNALIDMYSKCGML 586
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM--- 61
V L + M D + YA + L ++ +G Q+HA L++ G+ LG
Sbjct: 518 TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALI 577
Query: 62 ---------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
F E++ SWT+++ Y G +EE + LF + G
Sbjct: 578 DMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRA 637
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
+ KA S L +G+ ++ Y+I ++ + ++DM+ KCG ++ A F+E
Sbjct: 638 TFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDE 696
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 164/596 (27%), Positives = 253/596 (42%), Gaps = 177/596 (29%)
Query: 35 LNNLELGIQVHAHLIVCGVELCAF---LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVN 91
L+NL +V LI L + L +F N+F + +++ +E V+
Sbjct: 65 LHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVS 124
Query: 92 LFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
F L++ V K+ + L D +G+ ++ ++ + E ++ V+ ++DM++
Sbjct: 125 HFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYV 184
Query: 142 KCGRMEMASGEFEEKDFSN---------------------------LSLLKHGKEIHPHH 174
K G + F+E N + L+ G+ IH ++
Sbjct: 185 KIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGALQVGERIH-NY 243
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
L + + + + +L+D YAKC +K A F + K K L++W+ M+ G+A+
Sbjct: 244 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAI------- 296
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+G + AL+ F +M + P+ + +L AC+
Sbjct: 297 -----HGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVD--------------- 336
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
QGL +FE M+ +Y++EP M+ Y
Sbjct: 337 ------------QGLN--------------------------FFESMRLDYSIEPTMKHY 358
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPS----SAEPC------NPDIAEHAARHLFELEP 404
+VDLL RAG+ D+ L+F++ MP P A C N ++AE A L +LEP
Sbjct: 359 TLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEP 418
Query: 405 --------LSS-----------------------------------GKVHSFIAGDTSHS 421
LS+ G+VHSF+AGD +H
Sbjct: 419 KHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHV 478
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+IS KL + + K+ GYM K HSEKLALAFGLIST+PG
Sbjct: 479 RAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPG 538
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S +R++KNLR+CGDCHS KY SK + REII+ D RFHHF DG CSCGDYW
Sbjct: 539 STIRIVKNLRVCGDCHSMMKYASKLSR----REIILRDIKRFHHFKDGTCSCGDYW 590
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 152/604 (25%), Positives = 251/604 (41%), Gaps = 175/604 (28%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------- 50
SM + T++ +F C + + LG Q+HA ++
Sbjct: 98 SSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVK 157
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI--DEGVYKA-CSE 107
CG CA + +F++MPER+V SWT ++ Y +G +LF L D + A +
Sbjct: 158 CGSLRCARM-VFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTG 216
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
+ + D + ++ EG + ++ + C ++ + +D + S G
Sbjct: 217 YAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVG 276
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ LV ++L+D Y+KC ++ A+ F ++++++ S+++M+ G+A+
Sbjct: 277 DNV--------------LVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAI 322
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
+G A++ F M++T ++PN ++ GVL AC+ G+++
Sbjct: 323 ------------HGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQL--- 367
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
F M+K Y +
Sbjct: 368 --------------------------------------------------FASMEKCYGV 377
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAAR 397
P E Y CM DLL+RAG + L ++ MP E A NPD+AE A++
Sbjct: 378 APTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASK 437
Query: 398 HLFELEP--------------------------------------------LSSGKVHSF 413
LFELEP +G +H F
Sbjct: 438 RLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKF 497
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
+AGD SH +++I ++L L +K IGY KR+ HSEKLALAF
Sbjct: 498 VAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAF 557
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+ST GS ++++KNLR+C DCH SK R+I++ DN RFHHF++GACSC
Sbjct: 558 GLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTG----RKIVVRDNTRFHHFLNGACSC 613
Query: 520 GDYW 523
++W
Sbjct: 614 SNFW 617
>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 637
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 172/643 (26%), Positives = 265/643 (41%), Gaps = 214/643 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG-----------VEL---CAFLG----MFEKMP 66
Y + Q C +L G Q+H L+V G V+L C +G +F+ MP
Sbjct: 65 YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKD 116
+RNVF W ++ Y G +E + L+ ++D GV KAC+ L D G++
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------------K 156
V++ ++ + + V ++DM+ KCG ++ A F+ +
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244
Query: 157 DFSNLSL----------------------------LKHGKEIHPHHLKKDDLESDLLVNN 188
LSL L G+E+H ++ D L
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKL-KT 303
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+D YAK +++VA F ++ ++ LVSWNAM+ GY + G +E AL+
Sbjct: 304 SLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDE------------ALK 351
Query: 249 FFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F++M ++ + P+ I+ GVL+AC HG +++
Sbjct: 352 LFNKMRVEAQVTPDNITFVGVLSACN-----------HGGMVK----------------- 383
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
E +F +M Y+++P ++ + C+VD+L AG+F
Sbjct: 384 -------------------------EAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRF 418
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
++ + +K MP +P S C N ++ E A + L ELEP +G
Sbjct: 419 EEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIY 478
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
K H F+ GD SH +I E+L RL
Sbjct: 479 AQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLE 538
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+ GYM KR HSE+LA+AFGLIST G+ L V KNLR+C
Sbjct: 539 GLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCE 598
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K +S+ +REII+ D R+HHFV+G CSC DYW
Sbjct: 599 DCHVVIKLISQIV----QREIIIRDVNRYHHFVNGECSCKDYW 637
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 173/660 (26%), Positives = 256/660 (38%), Gaps = 215/660 (32%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------CGVELCAFL--- 59
LL+ M + + I +L +L+LG +HA+++ GV LC L
Sbjct: 212 LLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDM 271
Query: 60 -----------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY------ 102
+F+ + + ++ SWT+M+ Y E V LF ++ EG++
Sbjct: 272 YVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITM 331
Query: 103 ----KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEE 155
K C +GK ++ + + F + + +DM+ KCG + A F+
Sbjct: 332 LSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKS 391
Query: 156 KDF------------------------------------SNLSLL---------KHGKEI 170
KD + +SLL + GK I
Sbjct: 392 KDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWI 451
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H + + K ++ D+++ S +D YA C + AH F++ + + WNAM
Sbjct: 452 HSY-IDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAM--------- 501
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
I+GF +G GE ALE F M + PN I+ G L AC+
Sbjct: 502 ---ISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSH---------------- 542
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
G +Q EG R F M E+ P
Sbjct: 543 -----------------------------------SGLLQ--EGKRLFHKMVHEFGFTPK 565
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLF 400
+E Y CMVDLL RAG D+ +K MP P+ A C N + E AA+
Sbjct: 566 VEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFL 625
Query: 401 ELEPLSSGK-------------------------------------------VHSFIAGD 417
LEP SG +H FI GD
Sbjct: 626 SLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGD 685
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM-------------KRIPACG-HSEKLALAFGLIS 463
H K+ E + + +++ GY K++ A HSEKLA+A+GLIS
Sbjct: 686 REHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLIS 745
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T+PG P+R++KNLR+C DCH+ TK +SK REII+ D RFHHF +G+CSC DYW
Sbjct: 746 TAPGVPIRIVKNLRVCDDCHNATKLLSKIYG----REIIVRDRNRFHHFKEGSCSCCDYW 801
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+E+H + K+ D+ V N+L+ Y++ L +A F KI+ K +VSW+ M+ Y
Sbjct: 143 GQEVHGF-VVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYD 201
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G +E AL+ M ++P+ I + + A++ KLGK +H
Sbjct: 202 RSGLLDE------------ALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHA 249
Query: 287 YVLRHHIQLSTGVGI--ALISI--------------QGLGTGSFV-WNSLIDMYGRCGAI 329
YV+R+ +GV + ALI + GL S + W ++I Y C +
Sbjct: 250 YVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNL 309
Query: 330 QKNEGWRYFEMMKKE 344
NEG R F M E
Sbjct: 310 --NEGVRLFVKMLGE 322
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 95/220 (43%), Gaps = 38/220 (17%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
IT + + A + ++ M TD + + + VL AC + F LG+E+HG+V++
Sbjct: 96 ITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVK--- 152
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G FV N+LI MY G++ F+ ++ + +
Sbjct: 153 -------------NGFHGDVFVCNALIMMYSEVGSLALAR--LLFDKIENK-----DVVS 192
Query: 354 YCCMVDLLARAGQFDDTLNFMKK---MPFEPSSAEPCNPDIAEHAARH-LFELEPLSSGK 409
+ M+ R+G D+ L+ ++ M +PS +I + H L EL L GK
Sbjct: 193 WSTMIRSYDRSGLLDEALDLLRDMHVMRVKPS-------EIGMISITHVLAELADLKLGK 245
Query: 410 -VHSFIA--GDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+H+++ G S V + L+ +Y + + + Y +R+
Sbjct: 246 AMHAYVMRNGKCGKSGV-PLCTALIDMYVKCENLAYARRV 284
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 170/649 (26%), Positives = 259/649 (39%), Gaps = 195/649 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
L M L D Y + C + + G +VHAH+I C +L
Sbjct: 46 LLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVK 105
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+F+ MPERNV SWT+M+ Y+ GY + ++LF ++ G
Sbjct: 106 CDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGT---------- 155
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
E N VL I + G++IH
Sbjct: 156 ---------------EPNEFTFATVLTSCIGSSGFVL------------------GRQIH 182
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
H + K + E+ + V +SL+D YAK + A F + ++ +VS A+++GYA
Sbjct: 183 SH-IIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA----- 236
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G E ALE F R+ + MQ N ++ + VL A + + GK++H ++LR
Sbjct: 237 -------QLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS 289
Query: 292 HIQLSTGVGIALISI-QGLGTGSFV--------------WNSLIDMYGRCGA-------- 328
+ + +LI + G ++ WN+++ Y + G
Sbjct: 290 EVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELF 349
Query: 329 ---IQKNE------------------GWR------YFEMMKKEYNMEPAMEQYCCMVDLL 361
I +N+ G +++M + +++P + Y C+VD+L
Sbjct: 350 NLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDML 409
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ + F+KKMPFEPS+A C N DI E L ++EP ++G
Sbjct: 410 GRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYV 469
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H+F A D SH ++S
Sbjct: 470 ILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSA 529
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
K+ L + K+ GY+ + HSEKLAL FGLI+T P+RVIK
Sbjct: 530 KVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIK 589
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ KY SK RE+ + D RFH V G CSCGDYW
Sbjct: 590 NLRICVDCHNFAKYTSKIYG----REVSLRDKNRFHRIVGGKCSCGDYW 634
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 164/634 (25%), Positives = 251/634 (39%), Gaps = 197/634 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFLGMFEKM 65
T+ +F+ C N G Q+H H G L + +F+KM
Sbjct: 90 TFPSLFKSC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKM 146
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
++ V SW +M+G++ E V LF D M+ K
Sbjct: 147 EDKTVVSWATMIGVHAQWDQPNEAVRLF-------------------------DRMM--K 179
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
E + ++++ C R +L+++K IH ++ + ++
Sbjct: 180 SENVKPNEVTLVNVLTACARAR------------DLAMVK---RIH-EYIDEHGFGRHVV 223
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+N LMD Y KC +++A F K ++K+L SWN M I G + + E
Sbjct: 224 LNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIM------------INGHVEDSNYEE 271
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F M ++ + ++++ +L AC + +LGK +H Y+ + I + +G AL+
Sbjct: 272 ALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVD 331
Query: 306 IQGLGTGSF----------------VWNSLIDMYGRCGAIQK------------------ 331
+ GS W +LI CG +
Sbjct: 332 MYA-KCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAI 390
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
+EG +F M Y ++P +E Y +VD+L RAG+ + +K
Sbjct: 391 TFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKS 450
Query: 377 MPFEPSS------AEPC----NPDIAEHAARHLFELEPLSSGK----------------- 409
MP P C N + AE AA+ L E++P SG
Sbjct: 451 MPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEA 510
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
VH F+ GD+SH +I+E L + S++K GY+
Sbjct: 511 KRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYV 570
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSEKLA+AFGL+STS G+P+RV+KNLR+C DCHS TK +
Sbjct: 571 PDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLI 630
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK REII+ D RFHHF DG CSC +W
Sbjct: 631 SKL----YNREIIVRDRNRFHHFKDGTCSCRGFW 660
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 146/487 (29%), Positives = 212/487 (43%), Gaps = 139/487 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS LKHG+ +H H L D+ V +L+ Y KC L A F KI+++ +
Sbjct: 119 KSCADLSALKHGRVVHGHVLVHG-FGLDVYVQAALVALYGKCGDLINARKVFDKIRERSI 177
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN+M++GY GF +E G F RM +T ++P++ + VL+ACA +
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGL------------FDRMKETGVEPDSATFVSVLSACAHL 225
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-GLGTGS--------------FVWNSLI 320
F LG +H Y++ + + L+ +G +LI++ G S W ++I
Sbjct: 226 GAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMI 285
Query: 321 DMYGRCG---------------------------------AIQKNEGWRYFEMMKKEYNM 347
YG G A NEG R F +++EY++
Sbjct: 286 SGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHL 345
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA------EPC----NPDIAEHAA 396
P +E C+VD+L RAG D+ NF+K+ +P P+ A C N D+ A
Sbjct: 346 VPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVA 405
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL EP + K + F
Sbjct: 406 EHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLF 465
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLA 456
GD SHS + I L L + + GY +P HSEKLA
Sbjct: 466 SMGDKSHSETNAIYHYLDELMWKCSEAGY---VPVSDSVMHELEEEEREYALRYHSEKLA 522
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ TS G+P+R++KNLRMC DCHS K++S REII+ D RFHHF G+
Sbjct: 523 IAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAIS----SREIIVRDKLRFHHFKVGS 578
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 579 CSCLDYW 585
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+L F+SRM+ +++ P+ + + V+ +CA + K G+ +HG+VL H L V AL++
Sbjct: 95 SLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVA 154
Query: 306 IQG--------------LGTGSFV-WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
+ G + S V WNS+I Y + G ++ G F+ M KE +EP
Sbjct: 155 LYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGL--FDRM-KETGVEPD 211
Query: 351 MEQYCCMVDLLARAGQFD 368
+ ++ A G F
Sbjct: 212 SATFVSVLSACAHLGAFS 229
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 173/704 (24%), Positives = 277/704 (39%), Gaps = 219/704 (31%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELG---IQVHAHLIVCGVELCAFLG------------ 60
T PD VT+ + C N E+G QV +I G + +G
Sbjct: 145 TEPD--YVTFVTLLSGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNR 199
Query: 61 ------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA--------CS 106
+F++MPE + S+ +M+ Y+ G E+ VNLF + + G+ C+
Sbjct: 200 LDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCA 259
Query: 107 E--LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------ 146
L D +G+ ++ ++I F N V +LD + K +
Sbjct: 260 NIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSY 319
Query: 147 ---------------------EMASGEFEEKDFSNLSLL---------KHGKEIHPHHLK 176
E+ F+ K F ++L + G++IH +
Sbjct: 320 NVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIV 379
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+S++LV NSL+D YAKC + A F+ + + V W AM++ Y GF EE
Sbjct: 380 TT-ADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEE--- 435
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
L+ F++M Q + + + + +L A A + LGK++H ++++ +
Sbjct: 436 ---------GLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSN 486
Query: 297 TGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQKN--------- 332
G AL+ + Q + + V WN++I Y + G +
Sbjct: 487 VFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVL 546
Query: 333 ------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
EG +F M + Y ++P E Y +VD+L R+G+F+
Sbjct: 547 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 606
Query: 369 DTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---------- 408
+ M +MP +P S C N ++A AA LF +E L
Sbjct: 607 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 666
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+ H F A D H + +I +K+ L
Sbjct: 667 AAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLT 726
Query: 435 SEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++GY K +C HSE+LA+AF LIST GSP+ V+KNLR C
Sbjct: 727 KTMEELGY-KPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRAC 785
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K +SK REI + D+ RFHHF DG CSCGD+W
Sbjct: 786 IDCHAAIKVISKIVG----REITVRDSTRFHHFRDGFCSCGDFW 825
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 123/306 (40%), Gaps = 82/306 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----MFEKMPERNVFSWTSMMGMYNVL 83
+F++ P N V ++++ G LG +F+ M ER +WT ++G Y+ L
Sbjct: 74 LFEKMPHKNT------VSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQL 127
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
++E LF + R G + DY+ + + C
Sbjct: 128 NQFKEAFELFVQM--------------QRCGTEP-DYVTFVT-------------LLSGC 159
Query: 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
EM + + + ++K G +S L+V N+L+D Y K L +A
Sbjct: 160 NGHEMGNQITQVQ----TQIIKLG------------YDSRLIVGNTLVDSYCKSNRLDLA 203
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F ++ + VS+NAM ITG+++ G E A+ F M + ++P
Sbjct: 204 CQLFKEMPEIDSVSYNAM------------ITGYSKDGLDEKAVNLFVEMQNSGLKPTEF 251
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
+ + VL A + LG++IH +V++ + + FV N+L+D Y
Sbjct: 252 TFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV----------------FVSNALLDFY 295
Query: 324 GRCGAI 329
+ ++
Sbjct: 296 SKHDSV 301
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 168/610 (27%), Positives = 255/610 (41%), Gaps = 173/610 (28%)
Query: 59 LGMFEKMPERNVFSWTSMMGM--------YNVLGYYEEIVNLFY--LLIDEGVYKACSEL 108
L +F+ + + NVF W M+ + +L YYE +V F V KACS+
Sbjct: 91 LRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDA 150
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
G V+ +++ G+ + + M+ GR+ A ++K G
Sbjct: 151 GVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK----------GG 200
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS-WNAMLAGYAL 227
E+ D + N+++D Y + ++ A F + + ++S WNAM++G++
Sbjct: 201 EV------------DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSR 248
Query: 228 GGF-------------REEIT------GFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
G R+EI+ G+ Q G ALE F +M + ++P L V
Sbjct: 249 CGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSV 308
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF-------- 314
L+ACA + G+ IH Y R+ IQL +G +L+ + L F
Sbjct: 309 LSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEV 368
Query: 315 -VWNSLID---MYGRC-----------------------------GAIQKNEGWRYFEMM 341
WN++I M+GR G +QK G F M
Sbjct: 369 SSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQK--GLTIFNSM 426
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDI 391
+KEY +EP +E Y C+VDLL RAG + + +P EP+ A + N ++
Sbjct: 427 RKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVEL 486
Query: 392 AEHAARHLFELEPLSSGK------------------------------------------ 409
E + L ELEP +SG+
Sbjct: 487 GERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGR 546
Query: 410 --VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSE 453
VH FI GD SH V I + L ++ ++ GY K HSE
Sbjct: 547 GEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSE 606
Query: 454 KLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513
KLA+ FGLI+TSPG+ +R++KNLR+C DCHS TK +S+ REII+ D R+HHF
Sbjct: 607 KLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQV----YNREIIVRDRIRYHHFR 662
Query: 514 DGACSCGDYW 523
+GACSC D+W
Sbjct: 663 NGACSCKDFW 672
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 174/672 (25%), Positives = 271/672 (40%), Gaps = 204/672 (30%)
Query: 40 LGIQVHAHLIVCGVE-----------LCAFLGM-------FEKMPERNVFSWTSMMGMYN 81
+G+QVHA ++ G E L + LGM F+KM R+ +W SM+ Y
Sbjct: 212 IGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYV 271
Query: 82 VLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNAC 131
G E+ +F + GV K+C+ L++ + K + + F +
Sbjct: 272 RNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQI 331
Query: 132 VKRPVLDMFIKCGRMEMASGEF----EEKDFSNLSLLKHG-------------------K 168
V ++ KC M+ A F E K+ + + + G +
Sbjct: 332 VITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391
Query: 169 EIHPHHLK---------------------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
+ P+H K + E V +L+D Y K A F
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
I+ K L++W+AMLAGYA Q G+ E A + F ++I+ ++PN + S
Sbjct: 452 EIIEAKDLMAWSAMLAGYA------------QTGETEEAAKLFHQLIKEGIKPNEFTFSS 499
Query: 268 VLAACAQ-VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV------- 315
V+ ACA + GK+ H Y ++ + + V AL+++ + + V
Sbjct: 500 VINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER 559
Query: 316 ----WNSLIDMYGRCGAIQK---------------------------------NEGWRYF 338
WNS+I Y + G +K +G +YF
Sbjct: 560 DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYF 619
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCN 388
M ++++ P M+ Y CM+DL +RAG + + + +MPF P ++ N
Sbjct: 620 NSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRN 679
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++ E AA L L+P S
Sbjct: 680 VELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIE 739
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGH 451
K +SF+AGD +H L ++I KL L +K GY K H
Sbjct: 740 VKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHH 799
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SE+LA+AFGLI+T P P++++KNLR+CGDCH+ TK VS E +R I++ D+ RFHH
Sbjct: 800 SERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVE----QRYIVVRDSNRFHH 855
Query: 512 FVDGACSCGDYW 523
F DG CSCGDYW
Sbjct: 856 FKDGLCSCGDYW 867
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 152/393 (38%), Gaps = 101/393 (25%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----- 60
V+LL S+ PDE T++ +F C + +LG QVH + G+ +G
Sbjct: 82 VSLLHSSLQ---PDESTLS--CVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVD 136
Query: 61 -------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107
+F++M ERNV SWTS++ Y+ G Y + LF + EGV
Sbjct: 137 MYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPN--- 193
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
Y +S A V V+ + ++ M ++KHG
Sbjct: 194 -----------RYTVSTVIA--ALVNEGVVGIGLQVHAM----------------VVKHG 224
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
E + V NSL+ Y++ L+ A F K++ + V+WN+M+AGY
Sbjct: 225 ------------FEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVR 272
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G E+ E F++M ++P ++ + V+ +CA ++ L K +
Sbjct: 273 NGQDLEV------------FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCK 320
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
L+ G T V +L+ +C + ++ F +M++ N
Sbjct: 321 ALK----------------SGFTTDQIVITALMVALSKCK--EMDDALSLFSLMEEGKN- 361
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + M+ + G D +N +M E
Sbjct: 362 ---VVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 151/594 (25%), Positives = 243/594 (40%), Gaps = 163/594 (27%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKA 104
LC + + P R+V SWTS++ Y+ E V F ++ G V A
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
C++LKD +G+ ++ + + + ++DM+ KCG A F+
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDAL-------- 300
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
G+ P N+++D Y K ++ VA F +++ + ++++N+M+
Sbjct: 301 --GRGPRPQSW------------NAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMM-- 344
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
TG+ G AL F M + D++ + ++ +L ACA + + G+ +
Sbjct: 345 ----------TGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRAL 394
Query: 285 HGYVLRHHIQLSTGVGIAL--------------ISIQGLGTGSF-VWNSLIDMYG----- 324
H + + ++ +G AL I Q +G W ++I
Sbjct: 395 HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMG 454
Query: 325 ----------RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCC 356
RC Q N EG YF+ M+ YN+ P +E Y C
Sbjct: 455 KAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGC 514
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-- 404
M+DLL R+G D+ ++ +K MP +P++ C + D+A+ AA HL +LEP
Sbjct: 515 MIDLLGRSGLLDEAMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDE 574
Query: 405 -----------------------------------------LSSGKVHSFIAGDTSHSLV 423
+G+VH F+ D SH +
Sbjct: 575 DGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRI 634
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
+I L + +K +GY K HSEKLA+AFGLI+ +P P
Sbjct: 635 LEIIAMLEEISHRLKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLP 694
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ + KNLR+C DCHS K +S R REII+ D RFHHF +G CSC D+W
Sbjct: 695 VHIRKNLRVCEDCHSAIKLIS----RLWNREIIVRDRSRFHHFREGTCSCNDFW 744
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---------------- 229
V+NSL+ Y + A F +I K V+W +++G A G
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ I +++ A+ F M+ + P+ +++ VL+ACA++K +LG+ +H
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH- 262
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
L+ +G+ T + +LIDMY +CG
Sbjct: 263 ---------------LLVEEKGMPTSENLVVALIDMYAKCG 288
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 153/593 (25%), Positives = 255/593 (43%), Gaps = 171/593 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVL--GYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F+++P+ ++F + +M+ +++ Y + I L+ D G + AC
Sbjct: 232 LFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNG 291
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
R G+ V+ + + + +GN V ++ MF K GR+E A F+
Sbjct: 292 MCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSA------------ 339
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-L 227
++ D N+++ Y + +A F ++ ++ +VSW+ ++AGY +
Sbjct: 340 -----------VDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQV 388
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G F E AL+FF +M+Q++++PN ++ LAAC+ + GK IH Y
Sbjct: 389 GCFME-------------ALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVY 435
Query: 288 VLRHHIQLSTGVGIALISIQG----LGTGSFV------------WNSLIDMYGRCGAIQK 331
+ R +I+++ + +LI + + + S V WN++I + G ++
Sbjct: 436 IRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEE 495
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
EG YFE+M +Y + P +E Y CMV
Sbjct: 496 AINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMV 555
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA----------------------------EP---- 386
DLL+R+G D+ + MP P A +P
Sbjct: 556 DLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIG 615
Query: 387 CNPDIAE--------HAARHLFELEPLSS--------------GKVHSFIAGDTSHSLVH 424
CN + + AR + E ++S G H F+ GD SH
Sbjct: 616 CNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSR 675
Query: 425 KISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSPGSP 469
+I L + S++K GY+ K HSEKLA+AFGL++T+PG+P
Sbjct: 676 EIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTAPGTP 735
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
+R++KNLR+CGDCH TK++SK +R II+ D R+HHF DG CSC DY
Sbjct: 736 IRIVKNLRVCGDCHQATKFISKV----YDRVIIVRDRMRYHHFKDGICSCKDY 784
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 256/591 (43%), Gaps = 159/591 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDH 111
+F+++ R++ W +++ Y + + + LF+ L+ E V K C+ L
Sbjct: 72 IFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCVIKGCARLGVV 131
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGK 168
+ GK ++ + I F + V+ +++M+ KCG ++ A F+ +KD
Sbjct: 132 QEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV--------- 182
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
L ++ +L+ N++++ Y K A F ++ LV+WN M+AGY L
Sbjct: 183 ------LWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELN 236
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G Q+ D A++ F M++ +P+ +L VL+A + + G+ IH Y+
Sbjct: 237 G---------QFMD---AVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYM 284
Query: 289 LRHHIQLSTGVGIALIS-----------------------------IQGLGTGSFVWNSL 319
++ +L +G +LI I GLG ++L
Sbjct: 285 EKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHAL 344
Query: 320 IDMYGRCGAIQK-------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
C K ++G +YF+MM EY +EP +E Y C+VD+
Sbjct: 345 ALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDI 404
Query: 361 LARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELEPLS---- 406
L RAG ++ N ++ MP P+ S DI E+AA+ + E+ P +
Sbjct: 405 LCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCY 464
Query: 407 ---------------------------------------SGKVHSFIAGDTSHSLVHKIS 427
G +H FI GD SH +I
Sbjct: 465 ILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIY 524
Query: 428 EKLMRLYSEIKKIGYM---KRIPAC------------GHSEKLALAFGLISTSPGSPLRV 472
K+ + ++K +G++ ++ C HSE+LA+AFGLI+ PG P+R+
Sbjct: 525 AKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRI 584
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLR+C DCHS TK +SK REII+ DN RFHHF +G+CSC DYW
Sbjct: 585 MKNLRVCNDCHSVTKLLSKI----YSREIIVRDNCRFHHFKNGSCSCMDYW 631
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 150/485 (30%), Positives = 209/485 (43%), Gaps = 141/485 (29%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S + LK GKE+H + ++ LE D V SL+ Y C L AH F ++ K LVSW
Sbjct: 505 SQIKSLKLGKEVHGL-IIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSW 563
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N M+ GY GF E AL F +M+ +QP IS+ V AC+ +
Sbjct: 564 NTMVNGYLQNGFPER------------ALSLFRQMVLYGVQPCEISMMSVFGACSLLPSL 611
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
+LG+E HGY L+ ++ + + ++I + GL S WN+++ Y
Sbjct: 612 RLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGY 671
Query: 324 GRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPA 350
G G ++ +EG Y + MK + M P
Sbjct: 672 GIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPT 731
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP-----------C----NPDIAEHA 395
++ Y C++D+L RAG+ D+ L K+ E S EP C N ++ E
Sbjct: 732 LKHYACVIDMLVRAGKLDEAL----KIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKI 787
Query: 396 ARHLFELEP--------LSS-----------------------------------GKVHS 412
A LF EP LS+ GKV S
Sbjct: 788 AAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFS 847
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALA 458
F+AG++S +I L EI K+GY + GHSEKLA+
Sbjct: 848 FVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAIT 907
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
+GLI TS G+ LRV KNLR+C DCH+ K +SK EREI++ DN RFHHF +G CS
Sbjct: 908 YGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKV----MEREIVVRDNKRFHHFKNGFCS 963
Query: 519 CGDYW 523
CGDYW
Sbjct: 964 CGDYW 968
Score = 115 bits (287), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 164/371 (44%), Gaps = 96/371 (25%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG--------- 60
PD T+ + + C ++ +++G+ VH ++ + L +F G
Sbjct: 182 PD--NFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDAL 239
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------------VYKAC 105
+F+ MPERN+ SW SM+ +++ G EE L ++++ V C
Sbjct: 240 RVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVC 299
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG--------------------- 144
+ ++ VGK V+ + + + V ++DM+ KCG
Sbjct: 300 ARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWN 359
Query: 145 --------------------RMEMASGEFEEKDFSNL---------SLLKHGKEIHPHHL 175
+M G+ + + L S+L + KE+H + L
Sbjct: 360 TMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSL 419
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K++ + ++ LV N+ + YAKC L AH F I+ K + SWNA++ GY
Sbjct: 420 KQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGY---------- 469
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
+Q D +L+ + +M + + P+ ++ +L+AC+Q+K KLGKE+HG ++R+ ++
Sbjct: 470 --SQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLER 527
Query: 296 STGVGIALISI 306
+ V I+L+S+
Sbjct: 528 DSFVYISLLSL 538
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 61/297 (20%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIK-FEGNACVKR--------PVLDMFIKCGRMEMASG 151
+Y C D R V+D + F+ NA + VL+MF+K M SG
Sbjct: 126 MYSMCGSPDDSR---SVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVK---MITESG 179
Query: 152 EFEE--------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+ K + +S ++ G +H +K +E D+ V+N+L+ FY + A
Sbjct: 180 LLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-DVFVSNALVSFYGTNGSVSDA 238
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREE---ITGFTQYGDGETALEFFSRMIQTDMQP 260
F + +++LVSWN+M+ ++ G EE + G D E A P
Sbjct: 239 LRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAF-----------TP 287
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ +L+ VL CA+ + +GK +HG ++ + V N+L+
Sbjct: 288 DVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVN----------------NALM 331
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
DMY +CG I N+ F++ N + + MV + AG T + +++M
Sbjct: 332 DMYSKCGCI--NDAQVIFKL-----NNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQM 381
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 31/171 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L + M L C ++ +F C L +L LG + H + + C +E AF+
Sbjct: 582 LFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYA 641
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDE----G 100
+F + ER+V SW +M+ Y + G +E + LF + DE G
Sbjct: 642 KNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLG 701
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR--PVLDMFIKCGRMEMA 149
V AC+ G D M ++ F N +K V+DM ++ G+++ A
Sbjct: 702 VLTACNHSGLVHEGLTYLDQMKTL-FGMNPTLKHYACVIDMLVRAGKLDEA 751
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 161/656 (24%), Positives = 264/656 (40%), Gaps = 199/656 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ MP N F W +M+ Y+ +G V+++ +++ GV K +
Sbjct: 75 VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
+ G++++D+++ + F N V+ ++ ++ G + +A G F+
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194
Query: 156 ----KDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
K F S L L GK +H ++K +E
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVH-RYVKDLKIEP 253
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------- 229
++ N+L+D YA C + A F +K + ++SW A++ G+ G
Sbjct: 254 VRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMP 313
Query: 230 ------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ I G+ Q + L F M +++P+ ++ +L ACA + +LG+
Sbjct: 314 ERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEW 373
Query: 284 IHGYVLRHHIQLSTGVGIALIS-----------------------------IQGLGTGSF 314
I Y+ ++ I++ + VG ALI I GL +
Sbjct: 374 IKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGY 433
Query: 315 VWNSLIDMYGR-----------------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQY 354
+L DM+ + C ++G ++F M ++ +EP + Y
Sbjct: 434 GEEAL-DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHY 492
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL RAG + +K MP +P+S C + ++AE AA+ + ELEP
Sbjct: 493 GCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEP 552
Query: 405 LS-------------------------------------------SGKVHSFIAGDTSHS 421
+ +G VH F+AGD H
Sbjct: 553 ENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHP 612
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+I KL + ++K GY K HSEKLA+AFGLIS+ PG
Sbjct: 613 QSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPG 672
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R++KNLRMC DCH YV+K + RE+I+ D RFHHF G+CSC DYW
Sbjct: 673 VTIRIVKNLRMCVDCH----YVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 153/358 (42%), Gaps = 95/358 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------ 59
PDE TY + +R + ++ G ++H H++ G F+
Sbjct: 117 PDE--YTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVAR 174
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE--------------GVYKAC 105
G+F++ + +V +W M+ YN ++E + LF DE V AC
Sbjct: 175 GVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLF----DEMERMRVLPSSITLVSVLSAC 230
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
S+LKD VGK V+ Y+ +K E ++ ++DM+ CG M+ A G F
Sbjct: 231 SKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIF------------ 278
Query: 166 HGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
D+++S D++ +++ + + +A F K+ ++ VSW AM+ G
Sbjct: 279 ------------DNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDG 326
Query: 225 Y-ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y + F+E L F M +++P+ ++ +L ACA + +LG+
Sbjct: 327 YLQVNRFKE-------------VLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEW 373
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
I Y+ ++ I++ SFV N+LIDMY CG ++K R F M
Sbjct: 374 IKAYIDKNEIKID----------------SFVGNALIDMYFNCGNVEK--AIRIFNAM 413
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 4 KNVTLLLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
K V L + M N PDE T+ I C L LELG + A++ +++ +F+G
Sbjct: 334 KEVLSLFREMQAANIKPDEFTMVS--ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGN 391
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F MP R+ SWT+++ + GY EE +++F ++ +
Sbjct: 392 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASI 449
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 144/484 (29%), Positives = 211/484 (43%), Gaps = 139/484 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L L+ GK +H + K+ L+ +L VNN+++D Y KC ++ A F++I++K ++SW
Sbjct: 22 AQLGNLERGKLLHSYS-KELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKDVLSW 80
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
+ML+G A G+ +E +L F +M ++P+ I+L GVL+ACAQ
Sbjct: 81 TSMLSGLAKSGYFQE------------SLALFRKMQLHKIEPDEITLVGVLSACAQTGAL 128
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS----------------FVWNSLID- 321
GK IH + + I + AL+ + GS F WN++I
Sbjct: 129 DQGKYIHLLIDKFEINCDLVLETALVDMYA-KCGSIDLALQVFRRMRVRNVFTWNAMIGG 187
Query: 322 --MYGR---------------------------CGAIQK---NEGWRYFEMMKKEYNMEP 349
M+G C +EG F+ MK ++ +EP
Sbjct: 188 LAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEP 247
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHL 399
ME Y C+VDLL RA + DD L F++ MP + +S C D+AE R +
Sbjct: 248 RMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRV 307
Query: 400 FELEPLSSGK-------------------------------------------VHSFIAG 416
ELEP S G+ +H F+AG
Sbjct: 308 IELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAG 367
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAF 459
D SH +I + + + G +P HSEKLA+A
Sbjct: 368 DRSHLQTEQIYAMIEEMTRRVNLDG--GHVPGTANVLFDIEEEEKEHSLFLHSEKLAIAL 425
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLIST GSP+R++KNLR+C DCHS K SK REI+ D RFHHF +G+CSC
Sbjct: 426 GLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKV----YNREIVARDRSRFHHFKEGSCSC 481
Query: 520 GDYW 523
D+W
Sbjct: 482 MDFW 485
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 60/374 (16%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----AFLGM--- 61
+ +D PDE VT + C +L NLE G +H++ G++ A L M
Sbjct: 1 MTKLDNLRPDE--VTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCK 58
Query: 62 ----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDE----GV 101
F ++ E++V SWTSM+ GY++E + LF + DE GV
Sbjct: 59 CDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGV 118
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNA--CVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
AC++ GK Y +++ KFE N ++ ++DM+ KCG +++A F
Sbjct: 119 LSACAQTGALDQGK--YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 176
Query: 160 NL---SLLKHGKEIHPHHLKK----DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
N+ + + G +H H D +E D L+ + + C C + +
Sbjct: 177 NVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCA------CSHAGLVD 230
Query: 213 KHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
+ L + AM + + E + + + AL F M ++ N++ + +
Sbjct: 231 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM---PIKANSVLWATL 287
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG--RC 326
L AC F L ++I R I+L + + L G W+ + + +
Sbjct: 288 LGACRSGGHFDLAEKI----XRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKN 343
Query: 327 GAIQKNEGWRYFEM 340
I+K G + E+
Sbjct: 344 KGIEKTPGCSWIEL 357
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
+++P+ +++ ++ ACAQ+ + GK +H Y GL V
Sbjct: 6 NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKE----------------LGLDENLSVN 49
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
N+++DMY +C I+ + F ++ E + + M+ LA++G F ++L +K
Sbjct: 50 NAILDMYCKCDDIESAQ--EVFNRIR-----EKDVLSWTSMLSGLAKSGYFQESLALFRK 102
Query: 377 MPF 379
M
Sbjct: 103 MQL 105
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 170/692 (24%), Positives = 274/692 (39%), Gaps = 209/692 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
TY + + C L +E G+++H+H + G+E F+ +F M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
R+V +W +M+ ++ G ++ V L + +EG V E K GK
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGK 230
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------------- 160
++ Y + F+ V +LDM+ KC + A F+ N
Sbjct: 231 ALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSD 290
Query: 161 ----------------------------------LSLLKHGKEIHPHHLKKDDLESDLLV 186
L+ L G+++H + +K + D+L+
Sbjct: 291 CMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXV-LDILL 349
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L+ YAKC + A F + K VS++A+ ++G Q G+ A
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAI------------VSGCVQNGNAAVA 397
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L F M + + P+ ++ GVL AC+ + + G HGY++ T + ALI +
Sbjct: 398 LSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDM 457
Query: 307 -QGLGTGSFV--------------WNSLIDMYGRCGAIQKN------------------- 332
G SF WN++I YG G +
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517
Query: 333 --------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EG +F+ M +++++ P ME CMVD+L RAG D+ +F++ MP
Sbjct: 518 ICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP 577
Query: 379 FEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK------------------- 409
FEP + C N ++ E ++ + L P S+G
Sbjct: 578 FEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAH 637
Query: 410 ------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
VH+F+ GD SH + +I+ KL L E+K++GY
Sbjct: 638 IRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAE 697
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEKLA+AFG+++ G P+ V KNLR+CGDCH+ K+++
Sbjct: 698 CSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTV 757
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K REI + D RFHHF +G C+CGD+W
Sbjct: 758 ITK----REITVRDANRFHHFKNGTCNCGDFW 785
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 43/239 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K+IH H LK +D V + L Y C + +A F +I ++ WN ++
Sbjct: 24 LTEAKKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIR 82
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
YA G + A++ + M+ ++PN + VL AC+ + + G E
Sbjct: 83 AYAWN------------GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK- 342
IH + + GL + FV +L+D Y +CG + E R F M
Sbjct: 131 IHSHA----------------KMFGLESDVFVCTALVDFYAKCGILV--EAQRLFSSMSH 172
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSAEPCN--PDIAEHAA 396
++ AM C + G DD + + +M E P+S+ P + E A
Sbjct: 173 RDVVAWNAMIAGCSLY------GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKA 225
>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 160/597 (26%), Positives = 246/597 (41%), Gaps = 185/597 (30%)
Query: 94 YLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
Y+ +D Y K C+ K G+ V+ ++I F + + +L+M+ KCG +E A
Sbjct: 46 YIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEA 105
Query: 150 SGEFE---EKDFSNLSLLKHGKEIHP---------------------------------- 172
F+ E+DF + L G H
Sbjct: 106 RKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAE 165
Query: 173 ------HHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
H L K +S++ V ++L+D Y + + A F ++ ++ VSWNA++
Sbjct: 166 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 225
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
AG+A + E ALE F M++ +P+ S + + AC+ + GK
Sbjct: 226 AGHA------------RRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGK 273
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYG-- 324
+H Y+++ +L G L+ + +GS WNSL+ Y
Sbjct: 274 WVHAYMIKSGEKLVAFAGNTLLDMYA-KSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332
Query: 325 -------------RCGAIQKNE------------------GWRYFEMMKKEYNMEPAMEQ 353
R G I+ NE GW Y+E+MKK+ + A
Sbjct: 333 GFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAW-H 391
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y +VDLL RAG + L F+++MP EP++A C N ++ +AA H+FEL+
Sbjct: 392 YVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 451
Query: 404 PLSSG-------------------------------------------KVHSFIAGDTSH 420
P G +H F+A D H
Sbjct: 452 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERH 511
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I+ K + ++IK++GY+ + + HSEK+ALAF L++T P
Sbjct: 512 PQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 571
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GS + + KN+R+CGDCHS K SKA REII+ D RFHHF DGACSC DYW
Sbjct: 572 GSTIHIKKNIRVCGDCHSAIKLASKAVG----REIIVRDTNRFHHFKDGACSCKDYW 624
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+YA +F C LE G VHA++I G +L AF G +F+++
Sbjct: 255 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 314
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+R+V SW S++ Y G+ E V F
Sbjct: 315 AKRDVVSWNSLLTAYAQHGFGNEAVCWF 342
>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 830
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 178/689 (25%), Positives = 269/689 (39%), Gaps = 206/689 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELC-AFLGMFEK-------------M 65
T++ + ++LG VHA I G V +C + + M+ K M
Sbjct: 159 TFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRM 218
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVYKA----CSELKDHRVGK 115
R++ SW ++M + G E + LF+ ++ E Y C+ LK + +
Sbjct: 219 ETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLAR 278
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---------------------- 153
++ ++ F V ++D + K G+++ A F
Sbjct: 279 QLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQN 338
Query: 154 ------------------EEKDFSNLSLLKHGKEIHPHHLK----KDDLESDLLVNNSLM 191
D + ++L + P + K + E V +LM
Sbjct: 339 GDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALM 398
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
Y+K + A F I QK +VSW+AML YA Q GD A F
Sbjct: 399 VSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYA------------QAGDCNGATNAFI 446
Query: 252 RMIQTDMQPNTISLSGVLAACAQ-VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
+M ++PN ++S + ACA G LG++ H ++H + V AL+S+
Sbjct: 447 KMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR- 505
Query: 311 TGS----------------FVWNSLIDMYGRCGAIQK----------------------- 331
GS WNS++ Y + G QK
Sbjct: 506 KGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSV 565
Query: 332 ----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
EG +YF++M ++Y + P M+ Y CMVDL +RAG+ D+T++ ++ MPF
Sbjct: 566 IMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPA 625
Query: 382 SSA------EPC----NPDIAEHAARHLFELEPLSSG----------------------- 408
C N ++ + AA L LEPL S
Sbjct: 626 GPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRK 685
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY------ 442
KVH FIA D SH L +I KL + +++K+ GY
Sbjct: 686 LMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSF 745
Query: 443 --------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSE+LALAFGLI+T P +PL + KNLR+ GD H+ K VS+ E
Sbjct: 746 VPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIE- 804
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
+REI+M D RFHHF G CSCGD+W
Sbjct: 805 ---DREIVMRDCCRFHHFKSGVCSCGDFW 830
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 91/323 (28%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----VELCAFL--------------GMFEKMPER 68
I + C + + LG Q+HA + CG + + L +FE M +R
Sbjct: 61 IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG 128
NV +WTS++ Y G ++++LF+ + EGV+
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWP------------------------- 155
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
N VL M G +++ G+ +H +K S + V N
Sbjct: 156 NPFTFSSVLSMVASQGMVDL------------------GQHVHAQSIKF-GCCSTVFVCN 196
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SLM+ YAKC ++ A F +++ + +VSWN ++AG L G ++ + D +++
Sbjct: 197 SLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNG--RDLEALQLFHDSRSSIT 254
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
+ + S V+ CA +K L +++H VL+H G
Sbjct: 255 MLTES----------TYSTVINLCANLKHLGLARQLHSSVLKH----------------G 288
Query: 309 LGTGSFVWNSLIDMYGRCGAIQK 331
+ V +L+D Y + G + K
Sbjct: 289 FHSYGNVMTALMDAYNKAGQLDK 311
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 179/692 (25%), Positives = 271/692 (39%), Gaps = 212/692 (30%)
Query: 25 YALIFQRCPKLNNLELGIQVH-----------AHL--------IVCGVELCAFLGMFEKM 65
Y + +RC K +L QVH AH+ I CG L +F+ +
Sbjct: 31 YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECG-RLQEARCVFDAL 89
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
+++ SW +M+ Y + E+ + LF + EGV KAC+ L + GK
Sbjct: 90 VKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGK 149
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------SG 151
+V+ + E + V +L M+ KCG + A SG
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209
Query: 152 ----------EFEEKDFSNLSL--------------LKHGKEIHPHHLKKDDLESDLLVN 187
+ E++ F ++ LK K +H H L LE D+ V
Sbjct: 210 NGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAG-LELDVRVG 268
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+ YAK + A F ++K + +VSWN M I F ++G G A
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVM------------IGAFAEHGRGHEAY 316
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ F +M +P+ I +L ACA + K+IH + L +++ VG AL+ +
Sbjct: 317 DLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMY 376
Query: 308 GLGTGSF----------------VWNSLIDMYGRCGAIQK-------------------- 331
+GS WN++I + G Q
Sbjct: 377 S-KSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTF 435
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+EG + M + Y +EP + CMVDLL RAG+ + F+ M
Sbjct: 436 VAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMA 495
Query: 379 FEPSSAE------PC----NPDIAEHAARHLFELEPLSSG-------------------- 408
+P A C N ++ E A+ +L+P ++
Sbjct: 496 VDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSW 555
Query: 409 -----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
K+H F+ D+SH +I+E ++ +IK GY+
Sbjct: 556 VRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPD 615
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K + C HSEKLA+ +GL+ T PG+P+RV KNLR+C DCH TK +SK
Sbjct: 616 TRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISK 675
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
E REII+ D RFHHF DG CSCGDYW
Sbjct: 676 VEG----REIIVRDANRFHHFKDGVCSCGDYW 703
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 152/533 (28%), Positives = 207/533 (38%), Gaps = 186/533 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ M ERNV +WT M+G L H G D + +
Sbjct: 681 VFDDMVERNVTTWTMMIG----------------------------GLAQHGCGHDAFSH 712
Query: 121 MISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ + EG +A +L G +E KE+H H +
Sbjct: 713 FLQMLREGIVPDATTYVSILSACASTGALEWV------------------KEVHNHAVSA 754
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L SDL V N+L+ YAKC + A F + ++ + SW M+ G A
Sbjct: 755 G-LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLA----------- 802
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q+G G AL+FF +M +PN S VL AC+
Sbjct: 803 -QHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHA---------------------- 839
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
L+D EG R F M ++Y +EP ME Y CM
Sbjct: 840 --------------------GLVD-----------EGRRQFLSMTQDYGIEPTMEHYTCM 868
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSS 407
VDLL RAG ++ F+ MP EP A C N ++AE AA+ +L+P S+
Sbjct: 869 VDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSA 928
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
++HSF+ GDTSH
Sbjct: 929 STYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESK 988
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I +L L +K GY+ K C HSEKLA+ +GL+ T P+
Sbjct: 989 EIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPI 1048
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV KNLR+C DCH+ TK++SK REI+ D RFHHF DG CSCGDYW
Sbjct: 1049 RVYKNLRVCSDCHTATKFISKITG----REIVARDAKRFHHFKDGVCSCGDYW 1097
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 84/367 (22%), Positives = 152/367 (41%), Gaps = 83/367 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
+ +Y I QRC K ++ L QVH +I G+E +N++ ++ +Y
Sbjct: 118 SFSYVNILQRCLKQEDILLAKQVHVCIIKSGME-------------QNLYVANKLLRVYI 164
Query: 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE-GNACVKRPVLD-M 139
G + +F L+ + +Y ++ MI E G+A V D M
Sbjct: 165 RCGRLQCARQVFDKLLKKNIY--------------IWTTMIGGYAEYGHAEDAMRVYDKM 210
Query: 140 FIKCGRMEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSL 190
+CG + + + LS+LK GK+IH H + + +SD+ V +L
Sbjct: 211 RQECG---------QPNEITYLSILKACCCPVNLKWGKKIHAH-IIQSGFQSDVRVETAL 260
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
++ Y KC ++ A F K+ +++++SW M+ G A YG G+ A F
Sbjct: 261 VNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA------------HYGRGQEAFHLF 308
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
+M + PN+ + +L A A + KE+H + + + L VG
Sbjct: 309 LQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG---------- 358
Query: 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
N+L+ MY + G+I ++ F+ M E + + M+ LA+ G+ +
Sbjct: 359 ------NALVHMYAKSGSI--DDARVVFDGMT-----ERDIFSWTVMIGGLAQHGRGQEA 405
Query: 371 LNFMKKM 377
+ +M
Sbjct: 406 FSLFLQM 412
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 90/390 (23%), Positives = 152/390 (38%), Gaps = 107/390 (27%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM---------- 61
P+E +TY I + C NL+ G ++HAH+I G + A + M
Sbjct: 216 QPNE--ITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDA 273
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----YKACSELKDHRVG 114
F+KM ERNV SWT M+G G +E +LF + EG Y S L +
Sbjct: 274 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333
Query: 115 ------KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLL- 164
K+V+ + ++ + V ++ M+ K G ++ A F+ E+D + +++
Sbjct: 334 GALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMI 393
Query: 165 ----KHGK-----------------------------------------EIHPHHLKKDD 179
+HG+ ++ H ++
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
SDL + N+L+ YAKC + A F + + ++SWNAM+ G A Q
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLA------------Q 501
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G G A F +M Q + P++ + +L + E+H +H ++
Sbjct: 502 NGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVH----KHAVE----- 552
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
GL + V ++ I MY RCG+I
Sbjct: 553 -------TGLISDFRVGSAFIHMYIRCGSI 575
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 148/378 (39%), Gaps = 95/378 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE----LKDHRVG-- 114
+F+ M +R+V SW +MMG G E +F + EG+ + L H
Sbjct: 480 VFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDA 539
Query: 115 ----KDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MASG 151
+V+ + + + V + M+I+CG ++ M G
Sbjct: 540 LEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGG 599
Query: 152 EFEEK----------------------DFSNL-------SLLKHGKEIHPHHLKKDDLES 182
+++ F N+ L+ KE+H H D
Sbjct: 600 AAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSH--ATDAGLV 657
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL V N+L+ Y+KC +K A F + ++++ +W M+ G A Q+G
Sbjct: 658 DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLA------------QHGC 705
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G A F +M++ + P+ + +L+ACA + KE+H + +
Sbjct: 706 GHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVS------------ 753
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GL + V N+L+ MY +CG+I ++ F+ M +E + + M+ LA
Sbjct: 754 ----AGLVSDLRVGNALVHMYAKCGSI--DDARSVFDDM-----VERDVFSWTVMIGGLA 802
Query: 363 RAGQFDDTLNFMKKMPFE 380
+ G+ + L+F KM E
Sbjct: 803 QHGRGLEALDFFVKMKSE 820
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 40/253 (15%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K +E +L V N L+ Y +C L+ A F K+ +K++ W M+ GYA
Sbjct: 146 KSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYA---------- 195
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+YG E A+ + +M Q QPN I+ +L AC K GK+IH ++++
Sbjct: 196 --EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQ------ 247
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
G + V +L++MY +CG+I+ + F+ M +E + +
Sbjct: 248 ----------SGFQSDVRVETALVNMYVKCGSIEDAQ--LIFDKM-----VERNVISWTV 290
Query: 357 MVDLLARAGQFDDTLNF---MKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSF 413
M+ LA G+ + + M++ F P+S + A +A L ++ + S V++
Sbjct: 291 MIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAG 350
Query: 414 IAGD--TSHSLVH 424
+A D ++LVH
Sbjct: 351 LALDLRVGNALVH 363
>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 695
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 159/598 (26%), Positives = 239/598 (39%), Gaps = 200/598 (33%)
Query: 53 VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------V 101
VE C +F++MP+++ +WT+M+ Y G E V F + EG V
Sbjct: 171 VEACR---VFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSV 227
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---------- 151
A LKD + + ++ ++ FE V+ + DM+ K M+ A+
Sbjct: 228 LSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLN 287
Query: 152 --------------------------------EFEEKDFSNL-------SLLKHGKEIHP 172
E E FS++ +LL+ G ++H
Sbjct: 288 VVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHA 347
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+K L SD V+++L+D Y KC + ++ F +I+ ++WNA
Sbjct: 348 EVIKTS-LISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNA------------ 394
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
I Q+G G A+ F RM + ++PN I+ +L AC+
Sbjct: 395 AINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHA----------------- 437
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
L+D EG +YF MK + +EP E
Sbjct: 438 -------------------------GLVD-----------EGLKYFYSMKDHHGIEPKGE 461
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFEL 402
Y C++D+ RAG+ D+ F+ +MP +P++ C N ++ E AA ++ +L
Sbjct: 462 HYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKL 521
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
EP ++G K H F + D S
Sbjct: 522 EPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWS 581
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--KRIPACG------------HSEKLALAFGLISTS 465
H KI EKL LY IK+ GY+ R C HSE++A+AF LIS
Sbjct: 582 HPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMP 641
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+ V KNLR+C DCHS K++SK E R+II+ DN RFHHFV G CSCGDYW
Sbjct: 642 ATKPIIVKKNLRICADCHSALKFISKVEN----RDIIVRDNSRFHHFVKGGCSCGDYW 695
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+++L V ++L D Y+K L A F ++ QK V+W AM+ GYA +
Sbjct: 150 FDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYA------------K 197
Query: 240 YGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
G+ E A+ F M + + + L VL+A +K L + IH V++
Sbjct: 198 NGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMK-------- 249
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G V N+L DMY +
Sbjct: 250 --------SGFEQEVAVRNALTDMYAKAA 270
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 35/217 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+ +H + + + N L+ Y+ C + A F + + +LVSW +
Sbjct: 33 LRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTL-- 90
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
++G TQ AL FS M + + P +LS A A + G +
Sbjct: 91 ----------VSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQ 140
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H VG+ L G FV ++L DMY + G + E R F+ M +
Sbjct: 141 LH------------CVGVRL----GFDAELFVASNLADMYSKSGLLV--EACRVFDQMPQ 182
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + M+D A+ G + + + M E
Sbjct: 183 KDAV-----AWTAMIDGYAKNGNLEAAVIAFRDMRRE 214
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 174/648 (26%), Positives = 264/648 (40%), Gaps = 199/648 (30%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------------VCGVELCAF 58
M + P+ Y ++ C + G +VHAH+I + C
Sbjct: 1 MAIQGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCEC 60
Query: 59 LG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114
LG +F++M ERNV SWT+M+ Y+ G+ E ++LF
Sbjct: 61 LGCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFV-------------------- 100
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
M+ E N VL C FS L G++IH H
Sbjct: 101 -----QMLRSDTEPNEFTFATVLS---SC------------TGFSGFEL---GRQIHSHI 137
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
K++ E+ + V +SL+D YAK + A F + ++ +VS A+++GYA
Sbjct: 138 FKRN-YENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYA-------- 188
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q G E ALE F R+ + M N ++ + +L A + + GK++H +VLR +
Sbjct: 189 ----QLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP 244
Query: 295 LSTGVGIALISI-QGLGTGSFV--------------WNSLIDMYGRCGAIQKNEGWRYFE 339
+ +LI + G ++ WN+++ Y + G + E + F+
Sbjct: 245 FYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHG--KGIEVVKLFK 302
Query: 340 MMKKEYNMEP-------------------------------------AMEQYCCMVDLLA 362
+M++E ++P +E Y C++DLL
Sbjct: 303 LMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLG 362
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK--- 409
RAG+ ++ +KKMPFEP++A C N +I E L E+EP ++G
Sbjct: 363 RAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVI 422
Query: 410 ----------------------------------------VHSFIAGDTSHSLVHKISEK 429
+H+F A D SH ++ K
Sbjct: 423 LSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLK 482
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
+ L + K+ GY+ K GHSEKLALAFGLISTS G PLRVIKN
Sbjct: 483 VRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKN 542
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K+VSK R++ + D RFHH G CSCGDYW
Sbjct: 543 LRICVDCHNFAKFVSKVYG----RQVSIRDKNRFHHVAGGICSCGDYW 586
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 165/645 (25%), Positives = 262/645 (40%), Gaps = 199/645 (30%)
Query: 32 CPKLNNLELGIQVHAHLIVCGVELCAFL--------------------GMFEKMPERNVF 71
C LN ++ Q+H H++ G++ ++ + E + RN F
Sbjct: 60 CINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPF 116
Query: 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGKDVYDYM 121
WT+++ Y + G ++E + ++ + E + KAC + D +G+ +
Sbjct: 117 LWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQFHAQT 176
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
++ V ++DM++KCG + A F+E E
Sbjct: 177 FRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMP-----------------------E 213
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D++ L+ YA+ ++ A F + K +V+W AM +TGF Q
Sbjct: 214 RDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAM------------VTGFAQNA 261
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG------KEIHGYVLRHHIQL 295
+ ALE+F RM ++ ++ + ++++G ++ACAQ+ K + GY H+
Sbjct: 262 KPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVV- 320
Query: 296 STGVGIALIS---------------IQGLGTGSFVWNSLI---DMYGRC----------- 326
+G ALI + F ++S+I +GR
Sbjct: 321 ---IGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMV 377
Query: 327 --GAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
AI+ N +G + F M + + +EP + Y CMVDLL RAG+
Sbjct: 378 TQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGR 437
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------------ 404
+ L +K M EP C NPDIAE AA HLFELEP
Sbjct: 438 LQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNV 497
Query: 405 ----------LS----------------------SGKVHSFIAGDTSHSLVHKISEKLMR 432
LS +G++H F G+ +H + KI +KL
Sbjct: 498 YSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEE 557
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L + +GY KR+ H+EKLALAF L++T+ ++++KNLRM
Sbjct: 558 LVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNLRM 617
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH + S+ R IIM DN RFHHF GACSCGD+W
Sbjct: 618 CQDCHMFMRLASEVTG----RVIIMRDNMRFHHFRSGACSCGDFW 658
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 157/636 (24%), Positives = 257/636 (40%), Gaps = 193/636 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F +MP ++ SW S++ + G E + LF + +G V AC++ +
Sbjct: 474 VFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRY 533
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME----------------------- 147
G+ V+ Y + G + +LDM+ C +
Sbjct: 534 WFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITS 593
Query: 148 -MASGEFEE------------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
M +G F++ F+ LK GK +H + ++ + +E
Sbjct: 594 YMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIR-NGMEK 652
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
L V N+LM+ Y KCR ++ A F ++ K ++SWN ++ GY+ F E
Sbjct: 653 LLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNE--------- 703
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ FS M+ +PN ++++ +L A A + + G+EIH Y LR + A
Sbjct: 704 ---SFSLFSDML-LQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNA 759
Query: 303 LISIQGLGTGSFV----------------WNSLIDMYG---------------RCGAIQK 331
L+ + + G+ + W +I YG R I+
Sbjct: 760 LVDMY-VKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEP 818
Query: 332 N------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+ EG R+F+ M+KEY +EP ++ Y C+VDLL+R G + L F
Sbjct: 819 DAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEF 878
Query: 374 MKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------- 408
++ MP EP S+ C N +AE A +F+LEP ++G
Sbjct: 879 IESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERW 938
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
KVH FIA + +H ++I+E L + +++
Sbjct: 939 EAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMRQE 998
Query: 441 GYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
G+ + CGHS KLA+AFG+++ G P+RV KN ++C CH
Sbjct: 999 GHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHCHEAA 1058
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
K++SK REII+ D+ RFH F G CSC Y
Sbjct: 1059 KFISKMC----NREIILRDSSRFHRFEGGRCSCRGY 1090
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 106/452 (23%), Positives = 181/452 (40%), Gaps = 114/452 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ M R+ SW SM+G G++ V+LF + +G V AC+ L
Sbjct: 261 VFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGY 320
Query: 111 HRVGKDVYDYMISIKFE----------GNACVKRPVLDMFIKCGRMEMAS---------- 150
+GK V+ Y + +A + ++ M++KCG M A
Sbjct: 321 GLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG 380
Query: 151 ---------------GEFEE------------------------KDFSNLSLLKHGKEIH 171
GEFEE K + LS + G H
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAH 440
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + K + V N+L+ FYAK + A F+++ ++ +SWN++++G + G
Sbjct: 441 GY-IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E A+E F RM + ++++L VL ACAQ + + G+ +HGY ++
Sbjct: 500 SE------------AIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVK- 546
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351
TG+ +G S N+L+DMY C Q + F M ++ +
Sbjct: 547 -----TGL---------IGETSLA-NALLDMYSNCSDWQSTN--QIFRSMGQKN-----V 584
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI-AEHAARHLFEL-EPLSSGK 409
+ M+ RAG FD +++M + PD+ A +A H F E L GK
Sbjct: 585 VSWTAMITSYMRAGLFDKVAGLLQEMVL-----DGIRPDVFAVTSALHAFAGDESLKQGK 639
Query: 410 -VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
VH + + L+ ++ LM +Y + + +
Sbjct: 640 SVHGYTIRNGMEKLL-PVANALMEMYVKCRNV 670
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 158/378 (41%), Gaps = 92/378 (24%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHL------------------IVCGVELCAFLG----M 61
+Y ++ Q C + +LE + HA + +V C LG +
Sbjct: 99 SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTV 158
Query: 62 FEKMPER--NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
F+ MP + +V WTS+M Y G ++E V+LF + + C
Sbjct: 159 FDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQM------QCCG------------- 199
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+S +CV +KC S+L L G+ IH L+K
Sbjct: 200 --VSPDAHAVSCV--------LKC--------------VSSLGSLTEGEVIHGL-LEKLG 234
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L V N+L+ Y++C ++ A F + + +SWN+M+ G G+
Sbjct: 235 LGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHG------- 287
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
TA++ FS+M + +++++ VL ACA + +GK +HGY ++ +G+
Sbjct: 288 -----TAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVK------SGL 336
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
L S+Q + + + L+ MY +CG + R F+ M + N + + ++
Sbjct: 337 LWGLDSVQSGIDDAALGSKLVFMYVKCGDMASAR--RVFDAMSSKGN----VHVWNLIMG 390
Query: 360 LLARAGQFDDTLNFMKKM 377
A+ G+F+++L+ +M
Sbjct: 391 GYAKVGEFEESLSLFVQM 408
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 170/652 (26%), Positives = 259/652 (39%), Gaps = 222/652 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ + C L ++ G Q H V G + F+ +F+++
Sbjct: 78 SFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI 137
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDE---------------GVYKACSELK 109
P+R++ SWTSM+ Y++ G + V+LF LL+DE V ACS +
Sbjct: 138 PKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVP 197
Query: 110 DHRVGKDVYDYMISIKF------------------EGNACVKRPVLDMFIKCGRME---- 147
+ + ++ ++I F EG V R + D + R+
Sbjct: 198 AKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSI 257
Query: 148 --------MASGEFE---------EKDFSNLSL------------LKHGKEIHPHHLKKD 178
M++ FE F+ ++L L+ GK IH ++
Sbjct: 258 MSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM- 316
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
LE D++V S++D Y KC ++ A F ++K K++ SW AM+AGY +
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGM----------- 365
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+G ALE F MI + ++PN I+ VLAAC+ G + G
Sbjct: 366 -HGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHA-----GLHVEG------------ 407
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
W M GR G +EP +E Y CMV
Sbjct: 408 -----------------WRWFNAMKGRFG-------------------VEPGLEHYGCMV 431
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS-- 406
DLL RAG + +++M +P S C N ++AE + LFEL+ +
Sbjct: 432 DLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCG 491
Query: 407 -----------------------------------------SGKVHSFIAGDTSHSLVHK 425
+G+VH F+ GD H K
Sbjct: 492 YYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREK 551
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I E L L ++ + GY+ K + HSEKLA+AFG+++T PGS +
Sbjct: 552 IYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVN 611
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+C DCH+ K +SK +RE ++ D RFHHF DG CSCGDYW
Sbjct: 612 VVKNLRVCSDCHNVIKLISKIV----DREFVVRDAKRFHHFKDGGCSCGDYW 659
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 154/589 (26%), Positives = 250/589 (42%), Gaps = 162/589 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+FE MP R+V SWTSM Y G E + F + G + AC++LKD
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD 194
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ G++V+ +++ GN V +++M+ C + A F+
Sbjct: 195 LKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS------------- 241
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
++D + ++L+ ++ +C + L V S+ + SWNA+
Sbjct: 242 -----RRDTVSWNVLITAYFLN--KECEKGLSVFGRMMSEGVGLNYASWNAV-------- 286
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
I G Q G E ALE SRM + +PN I+++ VL AC ++ + GK+IHGY+
Sbjct: 287 ----IGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342
Query: 290 RHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLI---DMYGRC----- 326
RH AL+ + + WN++I M+G
Sbjct: 343 RHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALL 402
Query: 327 -------GAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
++ N EG F+ M +++++EP + + CMVD+L
Sbjct: 403 LFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVL 462
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG--- 408
+RAG+ ++ F+KKMP EP++ C N ++ AA LFE+E + G
Sbjct: 463 SRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYV 522
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+VH+F+ GD S+ +I
Sbjct: 523 LLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYR 582
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L + +++ GY+ K C HSEKLA+AFG+++ + S +RV K
Sbjct: 583 FLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFK 642
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K+++K +II+ D+ RFHHF DG CSC D+W
Sbjct: 643 NLRICGDCHNAIKFMAKIVG----VKIIVRDSLRFHHFRDGLCSCQDFW 687
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 28/152 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD+L+ N+L+D Y KCR + A F + + ++SW +M + Y G E
Sbjct: 111 SDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLRE-------- 162
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F +M +PN++++S +L AC +K K G+E+HG+V+R+
Sbjct: 163 ----ALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRN---------- 208
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G+G FV ++L++MY C +I++ +
Sbjct: 209 ------GMGGNVFVSSALVNMYASCLSIRQAQ 234
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 98/254 (38%), Gaps = 43/254 (16%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
+ Y+ L+ A F KI Q L +W + I+ T++G A+++
Sbjct: 17 FIKVYSNSGDLQRARHLFDKIPQPDLPTWTIL------------ISALTKHGRSLEAIQY 64
Query: 250 FSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
++ + ++P+ + L V ACA ++ K +H +R G
Sbjct: 65 YNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRF----------------G 108
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWR-YFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+ + N+LIDMYG+C + +EG R FE M + + M G
Sbjct: 109 FCSDVLLGNALIDMYGKC---RCSEGARLVFEGMPFR-----DVISWTSMASCYVNCGLL 160
Query: 368 DDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKI 426
+ L +KM + E N +L+ L SG+ VH F+ + V +
Sbjct: 161 REALGAFRKMGL---NGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVF-V 216
Query: 427 SEKLMRLYSEIKKI 440
S L+ +Y+ I
Sbjct: 217 SSALVNMYASCLSI 230
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 135/467 (28%), Positives = 202/467 (43%), Gaps = 133/467 (28%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL--VSWNAMLAGYALGGFR 231
+ K E D+++ L+DFYAK Y++ A F + +++ V+WN M++ Y
Sbjct: 55 QIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAY------ 108
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G+ TA+ F +M +++P +++ +L+ACA + +G+ IHGY+
Sbjct: 109 ------VQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK 162
Query: 292 HIQLSTGVGIALISI--------------QGLGTGS-FVWNSLIDMYGRCGAIQK----- 331
+++ +G ALI + GL + F WNS+I G G ++
Sbjct: 163 RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAF 222
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+ G RYF M Y +EP +E Y CMVDLL R
Sbjct: 223 IVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGR 282
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK---- 409
AG + L ++ MP +P+S C + + E + L EL+P G
Sbjct: 283 AGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFL 342
Query: 410 ---------------------------------------VHSFIAGDTSHSLVHKISEKL 430
VH F+AGDTSH +I+ L
Sbjct: 343 SNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFL 402
Query: 431 MRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
+ E+K G++ HSE++A+AFGL+ST PG +RV+KNL
Sbjct: 403 DEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNL 462
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R C DCHS K +S A K REII+ D RFHHF +G+CSC DYW
Sbjct: 463 RTCSDCHSAMKLISNAFK----REIIVRDRKRFHHFRNGSCSCNDYW 505
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-- 304
L F+S M++ D+ P+ S S +L +CA +LG+ H +++ + + L+
Sbjct: 15 LGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDF 74
Query: 305 ---------------SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
++ + S WN++I Y +CG F+ M+ E N++P
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEF--GTAISMFQQMQSE-NVKP 131
Query: 350 AMEQYCCMVDLLARAGQFD 368
++ A G D
Sbjct: 132 TEVTMVSLLSACAHLGALD 150
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 160/596 (26%), Positives = 253/596 (42%), Gaps = 173/596 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F + E N+F + +M+ + ++E + +++ + EG + KAC+ L D
Sbjct: 64 IFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLD 123
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
++G ++ ++ E +A V ++ ++ KCG ++ A F+
Sbjct: 124 SKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFD---------------- 167
Query: 171 HPHHLKKDDLESDLLVNNSLMDFY---AKCR----YLKVAHCKFSKIKQKHLVSWNAMLA 223
D E ++ +++ Y KCR + A F + +K +VSW++M+
Sbjct: 168 -------DIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQ 220
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA G +E AL+ F +M+ +P+ ++ GVL ACA++ +LG
Sbjct: 221 GYASNGLPKE------------ALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNW 268
Query: 284 IHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSF-VWNSLID------- 321
+ R+ + +G ALI + +G+ VWN+ I
Sbjct: 269 ASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGH 328
Query: 322 ---MYGRCGAIQK-----------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
+G G ++K +EG +YF M++ + + P +E Y
Sbjct: 329 VKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYG 388
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL RAG D+ +K MP E ++ C + + E + L LEP
Sbjct: 389 CMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPS 448
Query: 406 SSGK-------------------------------------------VHSFIAGDTSHSL 422
+SG VH F+ GDTSH L
Sbjct: 449 NSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPL 508
Query: 423 VHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSPG 467
KI KL L ++K GY+ + C HSEKLA+AFGLIST+P
Sbjct: 509 SEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGC-HSEKLAIAFGLISTAPN 567
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RV+KNLR+CGDCH K++S R REII+ DN RFH F DG+CSC DYW
Sbjct: 568 DKIRVVKNLRVCGDCHEAIKHIS----RFTGREIIVRDNNRFHCFNDGSCSCKDYW 619
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F + LKH K +H L+ L+ D + N ++ F +H F + K+ ++
Sbjct: 17 FQGFNSLKHLKHVHAALLRLG-LDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFL 75
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+N M+ G L +E ++E + M + + P++ + +L ACA++
Sbjct: 76 FNTMIHGLVLNDSFQE------------SIEIYHSMRKEGLSPDSFTFPFLLKACARLLD 123
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
KLG ++HG V++ G + +FV SL+ +YG+CG I
Sbjct: 124 SKLGIKLHGLVVK----------------AGCESDAFVNTSLVSLYGKCGFIDN 161
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 180/710 (25%), Positives = 284/710 (40%), Gaps = 216/710 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + C K+ GIQVH ++ G+E F+ +FE M
Sbjct: 133 TFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGM 192
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
ERNV SWTS++ Y +E V+LF+ +++ G V AC++L+D +G+
Sbjct: 193 SERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGE 252
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------------ 163
V Y+ + + N + ++DM++KCG ++ A F+E NL L
Sbjct: 253 RVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQG 312
Query: 164 ------------------------------------LKHGKEIHPHHLKKDDLESDLLVN 187
L +GK H + ++ + LE +
Sbjct: 313 LAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR-NGLEGWDSIG 371
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------- 233
N ++D Y KC ++A F + K +VSWN++ AG+ G E
Sbjct: 372 NVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV 431
Query: 234 -----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
I+G Q E A+E F M ++ + +++ G+ +AC + +L K +H Y+
Sbjct: 432 FWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYI 491
Query: 289 LRHHI----QLSTGV------------------------------GIALISIQGLGTGSF 314
++ I +L+T + I ++++G G G+
Sbjct: 492 EKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGAT 551
Query: 315 -VWNSL------------IDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
++N + + + C Q +G F +M+ ++ + P +E Y CMVDL
Sbjct: 552 GLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDL 610
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------ 404
L RAG + + +K MP EP+ C N ++A +AA + EL P
Sbjct: 611 LGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVH 670
Query: 405 -------LSSGK------------------------------VHSFIAGDTSHSLVHKIS 427
S+GK +H F +GD SH + I+
Sbjct: 671 VLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIA 730
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
L + G++ K HSEKLA+AFGLI+T P+RV+
Sbjct: 731 LMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVV 790
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLRMC DCHS K S REII+ DN RFH F G CSC DYW
Sbjct: 791 KNLRMCSDCHSFAKMASII----YNREIIVRDNNRFHFFRQGLCSCCDYW 836
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 79/337 (23%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLG----MFE 63
+VT + C KL +L++G +V A++ G++L C + +F+
Sbjct: 232 SVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFD 291
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+ +RN+ + +++ Y G E + + ++ +G A ++L D
Sbjct: 292 ECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFY 351
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
GK + Y+I EG + ++DM++KCG+ EMA F+ SN +++ +
Sbjct: 352 GKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDL--MSNKTVVSW-NSLTAG 408
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
++ D+ES V F++I +++ V WN M
Sbjct: 409 FIRNGDVESAWEV--------------------FNQIPERNAVFWNTM------------ 436
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I+G Q E A+E F M ++ + +++ G+ +AC + +L K +H Y+ ++ I
Sbjct: 437 ISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGI 496
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ A L+DM+ RCG Q
Sbjct: 497 PCDMRLNTA----------------LVDMFARCGDPQ 517
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G++ G G A+ + RM+ + PN + VL+ C ++ F G ++HG V++
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK--- 159
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
GL F+ N LI Y CG + + G + FE M +
Sbjct: 160 -------------MGLEEDVFIQNCLIHFYAECGHM--DHGHKVFEGMSE 194
>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 866
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 184/694 (26%), Positives = 282/694 (40%), Gaps = 211/694 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM----------- 61
PD T+ + + C + +L G +VH H++ G EL A + M
Sbjct: 194 PD--VYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELK 109
F++MP R++ SW +M+ Y G E + LF+ L+ V AC L
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLG 311
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----------- 158
D R+G+D++ Y+I+ F + V + M++ G A F D
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMIS 371
Query: 159 -------------------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
+ L L G E+H +K L
Sbjct: 372 GYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR-LI 430
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S ++V N+L++ Y+KC+ + A F I +K+++SW +++AG L E
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE-------- 482
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL FF +M T +QPN I+L+ LAACA++ GKEIH +VLR + L +
Sbjct: 483 ----ALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537
Query: 302 ALISIQ-GLGTGSFVWNS--------------------------LIDMYGR--------- 325
AL+ + G + WN +++++ R
Sbjct: 538 ALLDMYVRCGRMNIAWNQFNSQKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPD 597
Query: 326 ----------CGAIQK-NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
CG Q +G YF M+ EY + P ++ Y C+VDLL RAG+ + F+
Sbjct: 598 EITFISLLCGCGKSQMVRQGLMYFSKME-EYGVTPNLKHYACVVDLLGRAGELQEAHKFI 656
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
+KMP P A C N D+ E +A+ +FEL+ S
Sbjct: 657 QKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWR 716
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
GKVH+F++ D H +I+ L Y ++ ++G
Sbjct: 717 EVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLDGFYEKMSEVG 776
Query: 442 YMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ CGHSE+ A+AFGLI++ PG P+ V KNL MC CH K
Sbjct: 777 LTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMPIWVTKNLNMCESCHDTVK 836
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
++SK + REI + D+ FHHF DG CSCGD
Sbjct: 837 FISKTVR----REISVRDSEHFHHFKDGECSCGD 866
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 150/354 (42%), Gaps = 89/354 (25%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
++ELG A + G + A+ +F KM ERN+FSW ++G Y GY++E + L++ +
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWY-VFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRM 186
Query: 97 IDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145
+ G V + C + D G++V+ +++ +E + V ++ M++KCG
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGD 246
Query: 146 ME-------------------MASGEFE-------------------EKDFSNLSLL--- 164
++ M SG FE + D L+ +
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISA 306
Query: 165 -------KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+ G++IH + + D+ V NSL Y + A FS++ K +VS
Sbjct: 307 CELLGDRRLGRDIHAYVITT-GFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W M++GY E+ A++ + M Q ++P+ I+++ VL+ACA +
Sbjct: 366 WTTMISGYEYNFLPEK------------AIDTYRMMDQDSVKPDEITVAAVLSACATLGD 413
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
G E+H ++ LIS V N+LI+MY +C I K
Sbjct: 414 LDTGVELHKLAIKAR----------LISY------VIVANNLINMYSKCKCIDK 451
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 187/698 (26%), Positives = 281/698 (40%), Gaps = 219/698 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM----------- 61
PD T+ + + C + +L G +VH H++ G EL A + M
Sbjct: 194 PD--VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELK 109
F++MP R++ SW +M+ Y G E + LF+ L+ V AC L
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF-------- 158
D R+G+D++ Y+I+ F + V + M++ G A F E KD
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371
Query: 159 -------------------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
+ L L G E+H +K L
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR-LI 430
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S ++V N+L++ Y+KC+ + A F I +K+++SW +++AG L E
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE-------- 482
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS----- 296
AL F +M T +QPN I+L+ LAACA++ GKEIH +VLR + L
Sbjct: 483 ----ALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537
Query: 297 --------------------------TGVGIALISIQGLGTGSFVWNSLIDMYGR----- 325
T I L G GS V ++++ R
Sbjct: 538 ALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMV----VELFDRMVKSR 593
Query: 326 ------------CGAIQKN---EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG + +G YF M+ +Y + P ++ Y C+VDLL RAG+ +
Sbjct: 594 VRPDEITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEA 652
Query: 371 LNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLS-------------- 406
F++KMP P A C D+ E +A+H+FEL+ S
Sbjct: 653 HKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADC 712
Query: 407 -----------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
GKVH+F++ D H +I+ L Y ++
Sbjct: 713 GKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKM 772
Query: 438 KKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
++G K + CGHSE+ A+AFGLI+T PG P+ V KNL MC +CH
Sbjct: 773 SEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCH 832
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
K++SK + REI + D FHHF DG CSCGD
Sbjct: 833 DTVKFISKTVR----REISVRDAEHFHHFKDGECSCGD 866
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 88/330 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F KM ERN+FSW ++G Y GY++E + L++ ++ G V + C +
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MAS 150
D GK+V+ +++ +E + V ++ M++KCG ++ M S
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 151 GEFE-------------------EKDFSNLSLL----------KHGKEIHPHHLKKDDLE 181
G FE + D L+ + + G++IH + +
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITT-GFA 329
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ V NSL Y + A FS++++K +VSW M++GY ++
Sbjct: 330 VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDK-------- 381
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A++ + M Q ++P+ I+++ VL+ACA + G E+H ++
Sbjct: 382 ----AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR--------- 428
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
LIS V N+LI+MY +C I K
Sbjct: 429 -LISY------VIVANNLINMYSKCKCIDK 451
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 29/146 (19%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+ + + + L A F K+ +++L SWN ++ GYA G+ +E
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDE------------ 178
Query: 246 ALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ + RM+ ++P+ + VL C + GKE+H +V+R+ +L V
Sbjct: 179 AMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVV---- 234
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQ 330
N+LI MY +CG ++
Sbjct: 235 ------------NALITMYVKCGDVK 248
>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
Length = 631
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 155/588 (26%), Positives = 245/588 (41%), Gaps = 196/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKD 110
+F++MP RNV W + + + G + ++ F L+ AC++ +
Sbjct: 115 LFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARC 174
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
+G+ ++ +I FEG+ V ++D++ KC +E+A F
Sbjct: 175 LDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAA 234
Query: 154 -EEKD------------------------------FSNLSLLKHGKEIHPHHLKKDDLES 182
E+ D ++ +S L+ G+ +H +K +E
Sbjct: 235 CEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKAC-VEG 293
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V ++L+D Y KC ++ F ++ +++LVSWNAM++GYA GD
Sbjct: 294 DIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYA------------HQGD 341
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A+ F M Q++ N ++L VL+AC+
Sbjct: 342 VDMAMTLFEEM-QSEAVANYVTLICVLSACS----------------------------- 371
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
R GA++ G FE M+ Y +EP E Y C+ D+L
Sbjct: 372 ----------------------RGGAVKL--GNEIFESMRDRYRIEPGAEHYACIADMLG 407
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG---- 408
RAG + F++KMP P+ + C P++ + AA +LF+L+P SG
Sbjct: 408 RAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVL 467
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
KVH F A DTSH +I
Sbjct: 468 LSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAM 527
Query: 430 LMRLYSEIKKIGYM-------------KRIPACG-HSEKLALAFGLISTSPGSPLRVIKN 475
L++L +E++ GYM +++ G HSEK+ALAFGLI+ PG P+R+ KN
Sbjct: 528 LVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIRITKN 587
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCHS K++S REII+ DN RFH F D CSC D+W
Sbjct: 588 LRICGDCHSAFKFISGIVG----REIIVRDNNRFHRFRDSQCSCRDFW 631
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 29/178 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K + L L GK+IH LK + +D V S D Y+K A F ++ +++
Sbjct: 66 KASTALCLPFAGKQIHAIALKLGQI-NDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNV 124
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
WNA ++ L G + A++ F + +P+ I+ L ACA
Sbjct: 125 AVWNAYISNAVLDGRPGK------------AIDKFIEFRRVGGEPDLITFCAFLNACADA 172
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ LG+++HG V+R + V N +ID+YG+C ++ E
Sbjct: 173 RCLDLGRQLHGLVIRSGFEGDVSVA----------------NGIIDVYGKCKEVELAE 214
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 37/154 (24%)
Query: 35 LNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSM 76
++ LE G VHA + VE F+G +F +MPERN+ SW +M
Sbjct: 273 ISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAM 332
Query: 77 MGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYD-----YMI 122
+ Y G + + LF + E V ACS ++G ++++ Y I
Sbjct: 333 ISGYAHQGDVDMAMTLFEEMQSEAVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRI 392
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156
E AC+ DM + G +E A EF +K
Sbjct: 393 EPGAEHYACIA----DMLGRAGMVERAY-EFVQK 421
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 44/179 (24%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------------------VELCA 57
PD +T+ C L+LG Q+H +I G VEL
Sbjct: 157 PD--LITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAE 214
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV---- 113
+ F M RN SW +M+ E+ +F + EG+ EL D+ V
Sbjct: 215 MV--FNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGI-----ELTDYMVSSVI 267
Query: 114 -----------GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
G+ V+ + EG+ V ++DM+ KCG +E F E NL
Sbjct: 268 SAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNL 326
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 163/637 (25%), Positives = 256/637 (40%), Gaps = 190/637 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F MP R+V SW +M+ + G E + + + E V C++ D
Sbjct: 204 VFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSND 263
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS------------------GE 152
G V+ Y+I E + V +++M+ K GR++ A
Sbjct: 264 VVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAA 323
Query: 153 FEEKD------------------------------FSNLSLLKHGKEIHPHHLKKDDLES 182
+E+ D F LS + G+ +H ++ LE
Sbjct: 324 YEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEV 383
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-ITGFTQYG 241
D+++ N+L++ YAK + A F ++ + ++SWN ++ GYA G E I +
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME 443
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+G T + PN + +L A + V + G +IHG ++++ + L V
Sbjct: 444 EGRTIV------------PNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVAT 491
Query: 302 ALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK--------------- 331
LI + G S WN++I G G +K
Sbjct: 492 CLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKA 551
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+E F+ M+KEY ++P ++ Y CMVDL RAG + N
Sbjct: 552 DHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNL 611
Query: 374 MKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------- 408
+ MP + ++ C N ++ A+ L E++ + G
Sbjct: 612 VSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKW 671
Query: 409 ----KVHS------------------------FIAGDTSHSLVHKISEKLMRLYSEIKKI 440
KV S F AG+ SH +I E+L L +++K +
Sbjct: 672 EGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSL 731
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ K HSE+LA+ FG+IST P SP+R+ KNLR+CGDCH+ T
Sbjct: 732 GYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNAT 791
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+SK EREII+ D+ RFHHF DG CSCGDYW
Sbjct: 792 KYISKIT----EREIIVRDSNRFHHFKDGICSCGDYW 824
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 114/537 (21%), Positives = 217/537 (40%), Gaps = 133/537 (24%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKMP 66
+ L+F+ C N+ + Q+HA L+V G V L A LG F+ +
Sbjct: 54 FNLVFRSC---TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID-----------EGVYKACSELKDHRVGK 115
+N+FSW SM+ Y G Y + ++ L+ V KAC L D G+
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GE 167
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDFSNLSLLKHG----- 167
++ +++ + FE + V ++ ++ + G +E+A F + +D + + + G
Sbjct: 168 KMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNG 227
Query: 168 ---------KEIHPHHLKKDD------------------------------LESDLLVNN 188
+ +K D LESD+ V+N
Sbjct: 228 NVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSN 287
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L++ Y+K L+ A F ++ + LVSWN+++A Y Q D TAL
Sbjct: 288 ALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAY------------EQNDDPVTALG 335
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR-HHIQLSTGVGIALISIQ 307
FF M+ M+P+ +++ + + Q+ ++G+ +HG+V+R +++ +G AL+++
Sbjct: 336 FFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMY 395
Query: 308 G-LGT--------------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
LG+ WN+LI Y + G +E + MM++ + P
Sbjct: 396 AKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGL--ASEAIDAYNMMEEGRTIVPNQG 453
Query: 353 QYCCMVDLLARAGQFDDTL----NFMKKMPFEPSSAEPCNPDI------AEHAARHLFEL 402
+ ++ + G + +K F C D+ E A +E+
Sbjct: 454 TWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEI 513
Query: 403 EPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK-------IGYMKRIPACGHS 452
+S ++ I S +H EK ++L+ +++ I ++ + AC HS
Sbjct: 514 PQETSVPWNAII----SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHS 566
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 161/586 (27%), Positives = 237/586 (40%), Gaps = 194/586 (33%)
Query: 59 LGMFEKMPERNVFSWTSMMGM--------YNVLGYYEEIVNLFYL--LIDEGVYKACSEL 108
L +F+ + + NVF W M+ + +L YYE +V F V KACS+
Sbjct: 112 LRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDA 171
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---------------------- 146
G V+ +++ G+ + + M+ GR+
Sbjct: 172 GVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDR 231
Query: 147 ------------EMASGEFEEKDF---------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
+M + + F +NL L G+ IH + K++ ++ D +
Sbjct: 232 KGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY-AKRNSIQLDGV 290
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ SL+D YAKC + +A F K+ K + SWNAM+ G A+ +G E
Sbjct: 291 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM------------HGRAED 338
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ FS+M D+ PN I+ GVL ACA HG
Sbjct: 339 AIDLFSKM---DINPNEITFVGVLNACA-----------HG------------------- 365
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G +QK G F M+KEY +EP +E Y C+VDLL RAG
Sbjct: 366 ---------------------GLVQK--GLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 402
Query: 366 QFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSGK------ 409
+ + +P EP+ A + N ++ E + L ELEP +SG+
Sbjct: 403 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSN 462
Query: 410 --------------------------------------VHSFIAGDTSHSLVHKISEKLM 431
VH FI GD SH V I + L
Sbjct: 463 IYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLD 522
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
++ ++ GY K HSEKLA+ FGLI+TSPG+ +R++KNLR
Sbjct: 523 KVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLR 582
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCHS TK +S+ REII+ D R+HHF +GACSC D+W
Sbjct: 583 VCEDCHSATKLISQV----YNREIIVRDRIRYHHFRNGACSCKDFW 624
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 163/649 (25%), Positives = 259/649 (39%), Gaps = 217/649 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAH---------LIVCG--VELCAFLGM-------FE 63
VT + + C L + L + +H + L VC +++ LGM F+
Sbjct: 170 AVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFD 229
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
M R++ +W S++ + G V +F + D GV A ++ D
Sbjct: 230 GMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICG 289
Query: 114 GKDVYDYMISIKFE-GNACVKRPVLDMFIKCGRMEMASGEFEE----------------- 155
G+ V+ YM+ ++ G+ ++DM+ K ++E A F+
Sbjct: 290 GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYM 349
Query: 156 --------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+S+L L+ G +H +K L D
Sbjct: 350 QNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTG-LNLD 408
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V ++D YAKC L A F + ++ WNA+++G + +G G
Sbjct: 409 VYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGV------------HGHG 456
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL FS+M Q + P+ ++ +LAAC+
Sbjct: 457 AKALSLFSQMQQEGISPDHVTFVSLLAACSHA---------------------------- 488
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
L+D +G +F MM+ Y ++P + Y CMVD+ R
Sbjct: 489 --------------GLVD-----------QGRNFFNMMQTAYGIKPIAKHYACMVDMFGR 523
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
AGQ DD +F++ MP +P SA C N ++ + A+++LFEL+P + G
Sbjct: 524 AGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLM 583
Query: 409 -----KVHSFIAGDTSHSLVHK-----------------------------------ISE 428
KV + D SLV + I
Sbjct: 584 SNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQR 643
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L+ L ++I+ +GY+ K HSE+LA+AFG+I+T P +PL + K
Sbjct: 644 ELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRTPLHIYK 703
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ TKY+SK EREII+ D+ RFHHF DG CSCGD+W
Sbjct: 704 NLRVCGDCHNATKYISKIT----EREIIVRDSNRFHHFKDGYCSCGDFW 748
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H L+ L D + +L+ Y + ++ A+ F +++ + + +WNAML+G
Sbjct: 89 QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
E G F RM+ + + +++S VL C + L +H Y
Sbjct: 149 ARAAEAVG------------LFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYA 196
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
++H GL FV N++ID+YG+ G +++
Sbjct: 197 VKH----------------GLDDELFVCNAMIDVYGKLGMLEE 223
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 161/579 (27%), Positives = 243/579 (41%), Gaps = 177/579 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP R+ SW +M+ Y G E + D+ D
Sbjct: 51 LFDDMPARDRGSWNAMISGYCQNGNAAEAL-------------------------DIADE 85
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M + EG V + C ++ G+ +L ++KHG L
Sbjct: 86 M---RLEGVKMDAITVASVLPVCAQV----GDILSGKLIHLYVIKHG------------L 126
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E +L V+N+L++ YAK L A F + K +VSWN ++ GYA G E
Sbjct: 127 EFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASE------- 178
Query: 241 GDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
A+E + M + ++ PN + +L A + V + G IHG V+++ + V
Sbjct: 179 -----AIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFV 233
Query: 300 GIALISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------- 331
G LI + G S WN++I YG G +K
Sbjct: 234 GTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERV 293
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
++ F MM++EY ++P+++ Y CMVDL RAG+ +
Sbjct: 294 KPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAF 353
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------- 408
NF+KKMP +P ++ C N ++ +HA+ LFE++ + G
Sbjct: 354 NFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVG 413
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
KV F G+ +H +I +L L S+IK
Sbjct: 414 KWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIK 473
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
IGY+ K GHSE+LA+A+G+ISTSP +P+R+ KNLR+CGDCH+
Sbjct: 474 TIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHT 533
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++S EREII+ D+ RFHHF G CSCGDYW
Sbjct: 534 VTKFISIIT----EREIIVRDSSRFHHFKGGTCSCGDYW 568
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 133/343 (38%), Gaps = 96/343 (27%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK+IH LK E D+ V SL+ Y++ + A F + + SWNAM++
Sbjct: 10 LLDGKKIHCLVLKLG-FEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMIS 68
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY Q G+ AL+ M ++ + I+++ VL CAQV GK
Sbjct: 69 GYC------------QNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKL 116
Query: 284 IHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV----------WNSLIDMYGRCG-- 327
IH YV++H ++ V ALI++ LG V WN+LI Y + G
Sbjct: 117 IHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVVSWNTLITGYAQNGLA 176
Query: 328 --------------AIQKNEG--------WRYFEMMKKEYNMEPAMEQYC---------C 356
I N+G + + +++ + + + C C
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAG 416
++D+ + G+ DD ++ ++P + S P N I+ +
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSV--PWNAMISCYG--------------------- 273
Query: 417 DTSHSLVHKISEKLMRLYSEIKK-------IGYMKRIPACGHS 452
VH EK + L+ E+K I ++ + AC HS
Sbjct: 274 ------VHGDGEKALELFREMKAERVKPDHITFVSLLSACSHS 310
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 159/584 (27%), Positives = 238/584 (40%), Gaps = 176/584 (30%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114
LC +F++MPERN S+ +++ Y + E + LF R+
Sbjct: 89 LCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFV-----------------RLH 131
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
++V + AC L++ G +IH H
Sbjct: 132 REVLPNQFTFASVLQACATMEGLNL---------------------------GNQIHCHV 164
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K L SD+ V+N+LMD YAKC ++ + F++ ++ V+WN ++ G+
Sbjct: 165 IKIG-LHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGH--------- 214
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q GDGE AL F M++ +Q ++ S L ACA + + G +IH ++
Sbjct: 215 ---VQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFD 271
Query: 295 LSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCG----------AI 329
V ALI + + V WN++I Y G +
Sbjct: 272 KDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKM 331
Query: 330 QKNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
Q+ E G YF M +++ +EP +E Y CMV LL R G
Sbjct: 332 QETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGH 391
Query: 367 FDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPL----------- 405
D + + ++PF+PS A + DI +A+ + E+EP
Sbjct: 392 LDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNM 451
Query: 406 --------------------------------SSGKVHSFIAGDTSHSLVHKISEKLMRL 433
S G VHSF GDTSH V I+ L L
Sbjct: 452 YATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWL 511
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+ + KK GY+ K HSE+LAL+FG+I T GSP+R++KNLR+C
Sbjct: 512 HMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRIC 571
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K +SK +REI++ D RFHHF +G CSCGDYW
Sbjct: 572 VDCHAAIKCISKVV----QREIVVRDINRFHHFQEGLCSCGDYW 611
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 30/166 (18%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H LK+ DL N L++ Y K +L A F ++ +++ +S+ ++ GYA
Sbjct: 57 GKGLHCEILKRGGC-LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYA 115
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E F + A+E F R+ ++ PN + + VL ACA ++G LG +IH
Sbjct: 116 ------ESVRFLE------AIELFVRL-HREVLPNQFTFASVLQACATMEGLNLGNQIHC 162
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+V++ GL + FV N+L+D+Y +CG ++ +
Sbjct: 163 HVIK----------------IGLHSDVFVSNALMDVYAKCGRMENS 192
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 163/611 (26%), Positives = 255/611 (41%), Gaps = 190/611 (31%)
Query: 86 YEEIVNLFYLLIDEGVY-----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
Y E + LF +L G Y AC LK R K V++YMI+ + + ++
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 135 PVLDMFIKCGRMEMASGEFEE---------------------------------KDFSN- 160
VL M +KCG M A F+E +DFS+
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDA 230
Query: 161 --------------LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
L L+ G+++H LK + D+ V +L+D Y+KC ++ A C
Sbjct: 231 GSRMFVTMIRASAGLGLIFAGRQLHSCSLKTG-VGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F ++ +K V WN+++AGYAL G+ EE AL + M + ++ + + S
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEE------------ALSMYYEMRDSGVKIDNFTFS 337
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG---------------T 311
++ CA++ + K+ H ++RH L AL+ +
Sbjct: 338 IIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397
Query: 312 GSFVWNSLIDMYGRCG----AIQ-----------------------------KNEGWRYF 338
WN+LI YG G A++ + GW F
Sbjct: 398 NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIF 457
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
E M +++ ++P Y CM++LL R G D+ +K PF+P+ C N
Sbjct: 458 ESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKN 517
Query: 389 PDIAEHAARHLFELEP--LS-----------SGKV------------------------- 410
++ + AA L+ + P LS SG++
Sbjct: 518 FELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIE 577
Query: 411 -----HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR----IPACG---------HS 452
+ FI+GD H+ +I +KL L EI K GY+ + +P HS
Sbjct: 578 IKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHS 637
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI+TS +PL+++++ R+CGDCHS K ++ + REI++ D RFHHF
Sbjct: 638 EKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTR----REIVVRDASRFHHF 693
Query: 513 VDGACSCGDYW 523
DG+CSCGDYW
Sbjct: 694 KDGSCSCGDYW 704
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 169/634 (26%), Positives = 264/634 (41%), Gaps = 185/634 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + C L +L G Q H +V G E F+ +F+++
Sbjct: 84 TFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEI 143
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P RN+ +WTS++ Y E + +F + E K G++V
Sbjct: 144 PRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFE---------KSEGNGEEV-------- 186
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G + ++ + C R+ + +S HG I K L+ +
Sbjct: 187 --GTSVDSVAMISVLSACSRVSNKA----------VSEGVHGVAI------KVGLDKVMG 228
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+L+D YAKC + ++ F + +K +VSWN+M+A YA G +
Sbjct: 229 VENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD------------ 276
Query: 246 ALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLR----HHIQLSTGV- 299
A E F M++ + N ++LS +L ACA ++G +H V++ +++ ++T +
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336
Query: 300 ---------GIALISIQGLGTGSF-VWNSLIDMYGRCG---------------AIQKN-- 332
+A + G+ + W ++I YG G ++ N
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396
Query: 333 ----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EGWR+F M EYN+EP +E Y CMVDLL RAG + N +K
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456
Query: 377 MPFEP------SSAEPC----NPDIAEHAARHLFELEPLS-------------------- 406
M S C + ++AE +AR LF+L+P +
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDV 516
Query: 407 -----------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
G+VH F+ GD H KI + L L ++++ GY+
Sbjct: 517 ERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYV 576
Query: 444 KRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+ + HSEKLA+AFG++++ PGS + VIKNLR+CGDCH+ K +
Sbjct: 577 PNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLI 636
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK REII+ D RFHHF DG CSCGDYW
Sbjct: 637 SKI----VSREIIVRDAKRFHHFKDGLCSCGDYW 666
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN+++A A GG D +L FS M + D++PN + + +C+ +
Sbjct: 49 SWNSLIAELARGG------------DSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GK+ H L + G + FV ++LIDMY +CG +
Sbjct: 97 DLNSGKQAHQQAL----------------VFGFESDLFVSSALIDMYSKCGKLS 134
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 163/612 (26%), Positives = 253/612 (41%), Gaps = 192/612 (31%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ + + + + V +L +FE+MPER++ SW +M+ Y G+ +
Sbjct: 17 LFDKMPERDLFSWNVMLTGY--VRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVD 74
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E +FY + LK+ I + G +L +++ GR+E
Sbjct: 75 EAREIFYKM----------PLKN------------GISWNG-------LLAAYVQNGRIE 105
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMD-FYAKCRYLKVAHCK 206
A FE K ++ L+ N LM F K R L
Sbjct: 106 DAKRLFESK-----------------------MDWTLVSWNCLMGGFVRKRRNL------ 136
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F + Q+ +SW+AM+AGY+ G EE AL FF M + + N S +
Sbjct: 137 FDNMPQRDSISWSAMIAGYSQNGCSEE------------ALHFFVEMQRDCERLNRSSFT 184
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGT 311
L+ C+ + +LG+++H +++ Q VG AL+++ + L
Sbjct: 185 CALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEK 244
Query: 312 GSFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYF 338
WN++I Y R G ++ ++G YF
Sbjct: 245 DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYF 304
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCN 388
M ++Y + + Y CMVDLL RAGQ ++ N MK MPFEP +A N
Sbjct: 305 YSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGN 364
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++ E AA+ +FE+EP +SG
Sbjct: 365 TELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLE 424
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH-------------- 451
K+H+F GDTSH KI L + ++K+ GY+ H
Sbjct: 425 VQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYH 484
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+A+G++ G P+RVIKNLR+C DCH+ KY+SK R II+ DN+RFH+
Sbjct: 485 SEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVG----RLIILRDNHRFHY 540
Query: 512 FVDGACSCGDYW 523
F G+CSC D+W
Sbjct: 541 FEGGSCSCRDFW 552
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 41/185 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ C + LELG Q+H L+ G + ++G F+++
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEI 241
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
E++V SW +M+ Y G+ EE + +F L+ G V ACS G
Sbjct: 242 LEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGS 301
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----EKDFSNLSLLKH 166
+ + DY I+ K C ++D+ + G++E A + E D + L
Sbjct: 302 EYFYSMNRDYGITAKLVHYTC----MVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLG 357
Query: 167 GKEIH 171
IH
Sbjct: 358 ASRIH 362
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 168/613 (27%), Positives = 256/613 (41%), Gaps = 179/613 (29%)
Query: 59 LGMFEKMPERNVFSWTSMMGM--------YNVLGYYEEIV-----NLFYLLIDEGVYKAC 105
L +F+ + + NVF W M+ + +L YYE +V N + V KAC
Sbjct: 92 LRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTY---PAVLKAC 148
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
S+ G V+ +++ G+ + + M+ GR+ A ++K
Sbjct: 149 SDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK--------- 199
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS-WNAMLAG 224
G E+ D + N+++D Y + ++ A F + + ++S WNAM++G
Sbjct: 200 -GGEV------------DAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISG 246
Query: 225 YALGGF-------------REEIT------GFTQYGDGETALEFFSRMIQTDMQPNTISL 265
++ G R+EI+ G+ Q G ALE F +M + ++P L
Sbjct: 247 FSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVL 306
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF----- 314
VL+ACA + G+ IH Y R+ IQL +G +L+ + L F
Sbjct: 307 PSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSN 366
Query: 315 ----VWNSLID---MYGRC-----------------------------GAIQKNEGWRYF 338
WN++I M+GR G +QK G F
Sbjct: 367 KEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQK--GLTIF 424
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCN 388
M+KEY +EP +E Y C+VDLL RAG + + +P EP+ A + N
Sbjct: 425 NSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN 484
Query: 389 PDIAEHAARHLFELEPLSSGK--------------------------------------- 409
++ E + L ELEP +SG+
Sbjct: 485 VELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIID 544
Query: 410 -----VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACG 450
VH FI GD SH V I + L ++ ++ GY K
Sbjct: 545 LGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQ 604
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+ FGLI+TSPG+ +R++KNLR+C DCHS TK +S+ REII+ D R+H
Sbjct: 605 HSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQV----YNREIIVRDRIRYH 660
Query: 511 HFVDGACSCGDYW 523
HF +GACSC D+W
Sbjct: 661 HFRNGACSCKDFW 673
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 249/591 (42%), Gaps = 206/591 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+F++MP+RNV SWT+M+ Y+ +++ + L L++ + V ++C+ + D
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD 177
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
R+ ++ +I E + V+ ++D+F K G E A F+E
Sbjct: 178 VRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGG 234
Query: 156 ---------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ + L+LL+ G + H H +K D
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD---Q 291
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL++NN+L+D Y KC L+ A F+++K++ +++W+ M++G A G+ +E
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQE--------- 342
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F RM + +PN I++ GVL AC+ H L
Sbjct: 343 ---ALKLFERMKSSGTKPNYITIVGVLFACS------------------HAGL------- 374
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L G + + S+ +YG ++P E Y CM+DLL
Sbjct: 375 ------LEDGWYYFRSMKKLYG----------------------IDPVREHYGCMIDLLG 406
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG---- 408
+AG+ DD + + +M EP + C N +AE+AA+ + L+P +G
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H+FI GD SH + ++S+K
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKK 526
Query: 430 LMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRV 472
L +L + IGY +P HSEKLALAFGL++ +R+
Sbjct: 527 LNQLIHRLTGIGY---VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH K SK E R I++ R+HHF DG CSCGDYW
Sbjct: 584 RKNLRICGDCHVFCKLASKLEI----RSIVIRGPIRYHHFQDGKCSCGDYW 630
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ Y K L AH F ++ Q++++SW M++ Y+ ++ AL
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK------------AL 147
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E M++ +++PN + S VL +C + ++ +H +++ +
Sbjct: 148 ELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIK----------------E 188
Query: 308 GLGTGSFVWNSLIDMYGRCG 327
GL + FV ++LID++ + G
Sbjct: 189 GLESDVFVRSALIDVFAKLG 208
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV-----------------CGVELCAFLGMFEKMP 66
T + + C L LELG+Q H H++ CG L L +F +M
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCG-SLEDALRVFNQMK 320
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
ER+V +W++M+ GY +E + LF + G
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 211/485 (43%), Gaps = 139/485 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLV 216
+ L L++G+ +H K + L S + V NSL+ Y C + AH F +I +++LV
Sbjct: 133 ARLLALRYGEGLHAEACK-NGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLV 191
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN++L G+A G E+ L F M++ + P+ ++ VL ACA++
Sbjct: 192 SWNSVLNGFAANGRPNEV------------LTVFREMLEVEFAPDGFTVVSVLTACAEIG 239
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI----------------QGLGTGSFVWNSLI 320
LG+ +H +V + + + G ALI + G+G W SLI
Sbjct: 240 VLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLI 299
Query: 321 -----------------------------DMYG------RCGAIQKNEGWRYFEMMKKEY 345
M G CG + ++G+RYF+ MK EY
Sbjct: 300 VGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLV--DDGFRYFDQMKAEY 357
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHA 395
+ P +E CMVDLL RAG+ ++ N++ MP EP++ A +I E A
Sbjct: 358 GITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAA 417
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
L EL+P SG V+
Sbjct: 418 WARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYE 477
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F+ GD SH +I E L + +++ GY+ K HSE+LA+A
Sbjct: 478 FVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIA 537
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ + PG+P+R++KNLR+CGDCH K +SK +REII+ D RFHHF GACS
Sbjct: 538 FALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVY----DREIIVRDRSRFHHFKGGACS 593
Query: 519 CGDYW 523
C DYW
Sbjct: 594 CKDYW 598
>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 990
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 173/649 (26%), Positives = 254/649 (39%), Gaps = 215/649 (33%)
Query: 18 PDECTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMF-------------- 62
PD+ T+T L P+ L L QVH H I +F+
Sbjct: 414 PDQYTMTSVLKAASSLPE--GLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA 471
Query: 63 EKMPERNVF---SWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
E + ER+ F +W +MM Y + + LF L+ +G V+K C L
Sbjct: 472 EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---------------- 153
GK V+ Y I ++ + V +LDM++KCG M A F
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591
Query: 154 -------EEKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
EE+ F S L+ L+ G++IH + LK +
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN-CT 650
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D V SL+D YAKC + A+C F +I+ ++ +WNAML G A Q+G
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLA------------QHG 698
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+G+ L+ F +M ++P+ ++ GVL+AC+
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS-------------------------- 732
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G S + + M+G G ++P +E Y C+ D L
Sbjct: 733 --------GLVSEAYKHMRSMHGDYG-------------------IKPEIEHYSCLADAL 765
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG N ++ M E S++ C + + + A L ELEPL S
Sbjct: 766 GRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 825
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+H F+ D S+ I
Sbjct: 826 LLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYR 885
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ + +IK+ GY+ K HSEKLA+AFGL+ST P +P+RVIK
Sbjct: 886 KVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIK 945
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ KY++K REI++ D RFH F DG CSCGDYW
Sbjct: 946 NLRVCGDCHNAMKYIAKV----YNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 171/443 (38%), Gaps = 116/443 (26%)
Query: 14 DLTNPD-EC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------- 60
D+ D EC VT+ L+ K+++L LG QVH + G++L +
Sbjct: 305 DMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR 364
Query: 61 -------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYK 103
+F+ M ER++ SW S++ G E V LF L+ G V K
Sbjct: 365 KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424
Query: 104 ACSELKDH-RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------- 155
A S L + + K V+ + I I ++ V ++D + + M+ A FE
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVA 484
Query: 156 -------------------------------KDFSNLSLLK---------HGKEIHPHHL 175
DF+ ++ K GK++H + +
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K + DL V++ ++D Y KC + A F I V+W M I+
Sbjct: 545 KS-GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTM------------IS 591
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
G + G+ E A FS+M + P+ +++ + A + + + G++IH L+ +
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT- 650
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG-WRYFEMMKKEYNMEPAMEQY 354
FV SL+DMY +CG+I ++ EMM + +
Sbjct: 651 ---------------NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN--------ITAW 687
Query: 355 CCMVDLLARAGQFDDTLNFMKKM 377
M+ LA+ G+ +TL K+M
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQM 710
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 132/303 (43%), Gaps = 62/303 (20%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL---------------FYLLI-------D 98
+FE+MP R+V W M+ Y +G+ EE ++L LL D
Sbjct: 202 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSD 261
Query: 99 EGVYKACSELKDHRV-------GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151
G K+ + D K + +Y+ S ++ +++ ++C ++
Sbjct: 262 AGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILM 321
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+L+L G+++H LK L+ L V+NSL++ Y K R A F +
Sbjct: 322 LATAVKVDSLAL---GQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ L+SWN+++AG A G E A+ F ++++ ++P+ +++ VL A
Sbjct: 378 ERDLISWNSVIAGIAQNGLEVE------------AVCLFMQLLRCGLKPDQYTMTSVLKA 425
Query: 272 CAQV-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ + +G L K++H H I+++ + SFV +LID Y R ++
Sbjct: 426 ASSLPEGLSLSKQVH----VHAIKINN------------VSDSFVSTALIDAYSRNRCMK 469
Query: 331 KNE 333
+ E
Sbjct: 470 EAE 472
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK H L ++ L+NN L+ Y+KC L A F K+ + LVSWN++LA YA
Sbjct: 58 GKCTHARILTFEENPERFLINN-LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 227 LGG--FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
E I + A F + Q + + ++LS +L C +
Sbjct: 117 QSSECVVENI---------QQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF 167
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
HGY + GL FV +L+++Y + G ++ EG FE M
Sbjct: 168 HGYACK----------------IGLDGDEFVAGALVNIYLKFGKVK--EGKVLFEEM 206
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 77/278 (27%)
Query: 20 ECTVTYALIFQRCPK---LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76
+CT L F+ P+ +NNL I +++ CG L +F+KMP+R++ SW S+
Sbjct: 59 KCTHARILTFEENPERFLINNL---ISMYSK---CG-SLTYARRVFDKMPDRDLVSWNSI 111
Query: 77 MGMYN-----VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
+ Y V+ ++ LF +L + VY + L
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLS---------------------- 149
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191
P+L + + G + AS F HG + K L+ D V +L+
Sbjct: 150 ---PMLKLCLHSGYV-WASESF------------HG------YACKIGLDGDEFVAGALV 187
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
+ Y K +K F ++ + +V WN ML Y GF+EE A++ S
Sbjct: 188 NIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEE------------AIDLSS 235
Query: 252 RMIQTDMQPNTISL------SGVLAACAQVKGFKLGKE 283
+ + PN I+L SG + QVK F G +
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGND 273
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 209/494 (42%), Gaps = 141/494 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH + DL V NS++D Y KC +L+ F ++ + ++SW +++ Y
Sbjct: 165 GRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYV 224
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G E ++GF Q A+ FF +M + ++ + I+L G
Sbjct: 225 KSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIG 284
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHI--QLSTGVGIALISI--------------QGLGT 311
V++ACAQ+ K I + + S VG ALI + QG+
Sbjct: 285 VISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKE 344
Query: 312 GS-FVWNSLI---DMYGRCGAIQK------------------------------NEGWRY 337
+ + ++S+I M+GR K +GW+
Sbjct: 345 RNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQI 404
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
FE+M+K Y ++P+ + Y CMVDLL RAG+ + +K MP EP C
Sbjct: 405 FELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHK 464
Query: 388 NPDIAEHAARHLFELEPL------------------------------------------ 405
+PDIA AA HLFELEP
Sbjct: 465 SPDIAAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWI 524
Query: 406 --SSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPAC 449
G VH F +GD +H +I + L L ++ GY KR
Sbjct: 525 ESEKGMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILM 584
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLALAFGLIST PGS +R++KNLR+C DCHS S+ REII+ D RF
Sbjct: 585 THSEKLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITG----REIIVRDIMRF 640
Query: 510 HHFVDGACSCGDYW 523
HHF DG CSCG++W
Sbjct: 641 HHFHDGICSCGNFW 654
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 77/197 (39%), Gaps = 55/197 (27%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F+++ + +NA++ GY + +E T EF+S M + + P + + +
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKEST------------EFYSLMRKEGVVPVSFTFT 150
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+ AC LG++IHG I + G G V NS+IDMY +C
Sbjct: 151 ALFKACGAKMDVGLGRQIHGQT---------------ILVGGFGEDLHVGNSMIDMYIKC 195
Query: 327 GAIQKNEGWRYFEMMK---------------KEYNMEPA-----------MEQYCCMVDL 360
G ++ G + F+ M K NME A M + MV
Sbjct: 196 GFLEC--GRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSG 253
Query: 361 LARAGQFDDTLNFMKKM 377
A+ + + + F +KM
Sbjct: 254 FAQNAKPREAIMFFEKM 270
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 178/699 (25%), Positives = 283/699 (40%), Gaps = 200/699 (28%)
Query: 1 WVIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG 60
+V + LL SMDL + C +A +++ + + A+ + V++ +
Sbjct: 137 FVFTTLLKLLVSMDLAHL--CWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHV- 193
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKD 110
F+ + +++ SWT M+ Y +YEE + LF + G K+C L+
Sbjct: 194 -FDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEA 252
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
VGK V+ + ++ + V +L+++ K G + A FEE
Sbjct: 253 FNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIAR 312
Query: 156 ------------------------KDFSNLSLLKH---------GKEIHPHHLKKDDLES 182
+F+ S+L+ GK+IH LK L S
Sbjct: 313 YAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFG-LNS 371
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ V+N++MD YAKC ++ + F ++ ++ V+WN ++ GY Q GD
Sbjct: 372 NVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGY------------VQLGD 419
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
GE A+ F+ M++ DMQP ++ S VL A A + + G +IH ++ T V +
Sbjct: 420 GERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANS 479
Query: 303 LISIQGL---------------GTGSFVWNSLIDMYGRCGAIQKN--------------- 332
LI + WN++I Y G +
Sbjct: 480 LIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPN 539
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+G +FE M K+Y+++P +E Y CMV LL R G+FD+ + +
Sbjct: 540 KLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLI 599
Query: 375 KKMPFEPSSAE------PC----NPDIAEHAARHLFELEP--------LSS--------- 407
++ ++PS C D+ A+H+ E+EP LS+
Sbjct: 600 GEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWD 659
Query: 408 --------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
G VH F GDTSH + I L L + + G
Sbjct: 660 NVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAG 719
Query: 442 YMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
Y +P C HSE+LALA+GLI T +R+IKNLR+C DCH+
Sbjct: 720 Y---VPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHT 776
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK +REI++ D RFHHF G CSCGDYW
Sbjct: 777 VMKLISKVV----QREIVIRDINRFHHFRHGVCSCGDYW 811
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 160/529 (30%), Positives = 221/529 (41%), Gaps = 179/529 (33%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
FE MP RN+ SW +++ Y + ++ + LF ++ E
Sbjct: 197 FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREA--------------------- 235
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+ NA VL + C SNLS L GK+IH +K L
Sbjct: 236 ---NVQPNASTLSSVL---LGC---------------SNLSALGFGKQIHQWCMKLL-LS 273
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+L V SL+ Y KC L A F ++ + +V+WNAM++GYA Q+G
Sbjct: 274 RNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYA------------QHG 321
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
DG+ A+ F RM ++PN I+ VL AC IH TG
Sbjct: 322 DGKEAINLFERMKDEGVEPNWITFVVVLTAC-----------IH-----------TG--- 356
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
L D +C FE M++ Y +EP ++ Y CMVDLL
Sbjct: 357 -----------------LCDFGIQC-----------FEGMQELYGIEPRVDHYSCMVDLL 388
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ + ++F++ MPFEP + C N + AE AA L E +P S+G
Sbjct: 389 CRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYV 448
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F + D H ++ I E
Sbjct: 449 QLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHE 508
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
KL +L +K++GY MK HSEKLA+AFGLIST+ G LR+ K
Sbjct: 509 KLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFK 568
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K +S E +REII+ D RFHHF G CSC DYW
Sbjct: 569 NLRVCGDCHNAAKVISMIE----DREIILRDTTRFHHFRGGHCSCDDYW 613
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 28 IFQRCPKL---NNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84
I Q C KL NL +G + + CG +L + +F +M R+V +W +M+ Y G
Sbjct: 263 IHQWCMKLLLSRNLTVGTSLVSMYCKCG-DLSSACILFGEMHTRDVVAWNAMISGYAQHG 321
Query: 85 YYEEIVNLFYLLIDEGV 101
+E +NLF + DEGV
Sbjct: 322 DGKEAINLFERMKDEGV 338
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 205/466 (43%), Gaps = 138/466 (29%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K L++D LV+ +L Y + ++ A F + +K + SWNAM++GYA
Sbjct: 341 KARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYA---------- 390
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q G E A+ F M + ++QPN I++S L+ACA + LGK +H + + ++L+
Sbjct: 391 --QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELN 448
Query: 297 TGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK--------- 331
V ALI + GS WN++I YG G +
Sbjct: 449 VYVMTALIDMYA-KCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDML 507
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+EG + F +M EY + P +E CMVDLL RAG+
Sbjct: 508 DARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKL 567
Query: 368 DDTLNFMKKMPFEPSSAEP---------C----NPDIAEHAARHLFELEPLSSG------ 408
++ L + + P S+ P C N D+A+ A++ LFEL+ ++G
Sbjct: 568 NEALELISEFP--QSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLS 625
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
+ H F+AGD H I L
Sbjct: 626 NLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLE 685
Query: 432 RLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLR 477
RL +++ + GY A HSEKLA+AFGL+ST PG+ +R+IKNLR
Sbjct: 686 RLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLR 745
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH+ TK++SK +R I++ D RFHHF DG CSCGDYW
Sbjct: 746 VCLDCHNATKFISKVT----QRLIVVRDASRFHHFRDGVCSCGDYW 787
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 89/198 (44%), Gaps = 31/198 (15%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H + +K E + +V LM Y+KC + A F ++ LV++NA+++GY+
Sbjct: 231 GRCVHGYGVKCGLAEHEHVVTG-LMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYS 289
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G E+++E F + + +PN+ +L V+ + L + +H
Sbjct: 290 VNGMV------------ESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHA 337
Query: 287 YVLRHHIQLSTGVGIALIS----IQGLGTGSFV-----------WNSLIDMYGRCGAIQK 331
+V++ + V AL + + + + + WN++I Y + G +
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397
Query: 332 NEGWRYFEMMKKEYNMEP 349
F++M +E N++P
Sbjct: 398 AVA--LFQLM-QELNVQP 412
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ M E+ + SW +M+ Y G E V LF L+ + V AC+ L
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK----- 165
+GK V+ + K E N V ++DM+ KCG + A F+ D N+
Sbjct: 430 LSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISG 489
Query: 166 ---HGKEIHPHHLKKDDLESDLLVNNS 189
HG+ L KD L++ +L +S
Sbjct: 490 YGLHGQGAEALKLYKDMLDARILPTSS 516
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 77/197 (39%), Gaps = 40/197 (20%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D V ++L Y K A F + + WN +LAG
Sbjct: 147 ADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP--------------- 191
Query: 242 DGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G ALE F RM+ ++P++ +L+ L A A+ +G+ +HGY GV
Sbjct: 192 -GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGY----------GVK 240
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L + + TG L+ +Y +CG + + F+ M P + Y ++
Sbjct: 241 CGLAEHEHVVTG------LMSLYSKCGDMDSAQ--FLFDRMDN-----PDLVAYNALISG 287
Query: 361 LARAGQFDDTLNFMKKM 377
+ G + ++ K++
Sbjct: 288 YSVNGMVESSVELFKEL 304
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 165/627 (26%), Positives = 268/627 (42%), Gaps = 161/627 (25%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76
NP T L+ ++C L+ L+ QVHAH+I G+ +F P + +S
Sbjct: 5 NPSSNHPTLQLL-EKCKTLDTLK---QVHAHMITTGL-------IFHTYPLSRILLISST 53
Query: 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGKDVYDYMISIKFEGNACVKRP 135
+ + L + I N L + + + + +K H + +Y +++ P
Sbjct: 54 IVFTHALSIFNHIPNPTIFLYNT-LISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFP 112
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
+F CG L+HG+ +H H LK + D V +L+++YA
Sbjct: 113 --SLFKACGSQPW---------------LRHGRALHTHVLKFLEPTCDPFVQAALLNYYA 155
Query: 196 KCRYLKVAHCK--FSKIKQKHLVSWNAMLAGYA--LGGFREEITGFTQYGDGETALEFFS 251
KC KV C+ F++I + L SWN++L+ Y G E+++ + L F
Sbjct: 156 KCG--KVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSLSLE------VLTLFI 207
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI----- 306
M ++ ++ N ++L +++ACA++ G H YVL+H+++L+ VG ALI +
Sbjct: 208 EMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCG 267
Query: 307 ----------QGLGTGSFVWNSLI-------------DMYGR------------------ 325
Q + +N++I D++ +
Sbjct: 268 CLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMC 327
Query: 326 -CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
C + EG FE MK+ Y +EP +E Y C+VDLL RAG+ + + MP +P++
Sbjct: 328 SCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNA 387
Query: 384 A----------EPCNPDIAEHAARHLFELEPLSSGK------------------------ 409
N +I E +HL +LEP +SG
Sbjct: 388 VIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLM 447
Query: 410 -------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI---- 446
+H F+ GD +H +I KL + + + G+ R
Sbjct: 448 KDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVL 507
Query: 447 ----------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
HSE+LA+AF LI++ +P+R+IKNLR+CGDCH+ +K +SK
Sbjct: 508 FDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSKLISKI---- 563
Query: 497 REREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D RFHHF +GACSC DYW
Sbjct: 564 YEREIIVRDRNRFHHFKEGACSCSDYW 590
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 250/587 (42%), Gaps = 179/587 (30%)
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------ 146
+ + AC L+ R K V++YM++ FE + V VL + +KCG M
Sbjct: 121 DALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPE 180
Query: 147 -EMAS-----------GEFEE---------KDFSN---------------LSLLKHGKEI 170
+MAS G F E ++F++ L L++ G++I
Sbjct: 181 KDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQI 240
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H LK+ + D V+ +L+D Y+KC ++ AHC F ++ +K V WN+++A YAL G+
Sbjct: 241 HSCALKRG-VGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGY 299
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE AL F+ M + + + ++S V+ CA++ + K+ H ++R
Sbjct: 300 SEE------------ALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVR 347
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG----AIQK 331
AL+ + WN+LI YG G A++
Sbjct: 348 RGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEM 407
Query: 332 NE-----------------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
E GW F M +++ ++P Y CMV+LL
Sbjct: 408 FEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLG 467
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL------- 405
R G D+ ++ PF+P++ C N ++ + AA +L+ +EP
Sbjct: 468 REGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIV 527
Query: 406 ------SSGKV------------------------------HSFIAGDTSHSLVHKISEK 429
SSGK+ ++F+ GD SHS +I EK
Sbjct: 528 LLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEK 587
Query: 430 LMRLYSEIKKIGYMKRIPAC-------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
+ + EI + GY++ A HSEKLA+AFGLI+T +PL++ +
Sbjct: 588 VNNMMVEISRHGYVEENKALLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGH 647
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCHS K+++ REI++ D RFHHF DG+CSCGDYW
Sbjct: 648 RVCGDCHSAIKFIAMVTG----REIVVRDASRFHHFRDGSCSCGDYW 690
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FEKM 65
T+ + + L +++G Q+H+ + GV CA + M F++M
Sbjct: 220 TFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQM 279
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PE+ W S++ Y + GY EE ++ +Y + D G V + C+ L K
Sbjct: 280 PEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAK 339
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ ++ ++ + ++D + K GRME A
Sbjct: 340 QAHAALVRRGYDTDIVANTALVDFYSKWGRMEDA 373
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHL--------IVCGVELCAFLG----------MFEKM 65
T +++ + C +L +LE Q HA L IV L F +F +M
Sbjct: 321 TISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRM 380
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+NV SW +++ Y G EE V +F ++ EG+
Sbjct: 381 RRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGM 416
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 168/645 (26%), Positives = 264/645 (40%), Gaps = 178/645 (27%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF--------LGMFEKMPERN 69
F C +L+ Q+HA I G ++ CAF +F +MPE N
Sbjct: 26 FTSCKTPRDLK---QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82
Query: 70 VFSWTSMMGMY---NVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGK 115
F W +++ + N E + LF ++ +G V KAC+ R GK
Sbjct: 83 CFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGK 142
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DFSNLSLLKHGKEIHPH 173
++ ++ F + V ++ M++ C ME A F + DF ++
Sbjct: 143 QIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQME-------- 194
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L K + ++++ N ++D + +K A F ++ Q+ +VSWN M++GYA
Sbjct: 195 -LDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYA------- 246
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q G A+ F M +++ PN ++L VL A A++ +LGK IH Y ++ I
Sbjct: 247 -----QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301
Query: 294 QLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMY--------------- 323
++ +G AL+ ++Q T + W+++I +
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361
Query: 324 -GRCGAIQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G+ G + EG +F M K ++P +E Y CMVDLL RAG
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAG 421
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------ 409
++ ++ MP EP C N + E A L EL P SG
Sbjct: 422 HLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSN 481
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
+H F+ D SHS +I L
Sbjct: 482 LYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGE 541
Query: 433 LYSEIKKIGY-------------MKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRM 478
+ +++ GY +R A HSEK+A+AFGLIST+P PL+++KNLR+
Sbjct: 542 MSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRI 601
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K +S K R+II+ D RFH F G+CSC DYW
Sbjct: 602 CEDCHASLKLISLIYK----RQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 39/235 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA-KCRYLKVAHCKFSKIKQKH 214
K F++ + K++H +K ++ D L ++ F A R + A F ++ + +
Sbjct: 24 KPFTSCKTPRDLKQLHAIFIKTGQIQ-DPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
WN +L A ++ E + F + + ++PN + VL ACA+
Sbjct: 83 CFCWNTILRVLAETN--------DEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR 134
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ---- 330
+ GK+IHG +++ G FV ++L+ MY C ++
Sbjct: 135 ASRLREGKQIHGLIVKF----------------GFHEDEFVISNLVRMYVMCAVMEDAYS 178
Query: 331 ---KN----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
KN +G E+ K++ + + + M+D R G N +MP
Sbjct: 179 LFCKNVVDFDGSCQMELDKRKQDGNVVL--WNIMIDGQVRLGDIKSAKNLFDEMP 231
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 181/733 (24%), Positives = 286/733 (39%), Gaps = 224/733 (30%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV----------- 53
+ L L+ M+ +PD+ T + L C K GIQ+H ++ G
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGL--SACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 54 -------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-DEGV---- 101
EL + +F++M ERNV SWTSM+ Y + ++ V+LF+ ++ DE V
Sbjct: 177 HFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
AC++L+D G+ VY ++ + E N + ++DM++KC +++A F+E
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 156 KDFSNLSLLKH------------------------------------------------G 167
SNL L G
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG 356
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K H + L+ + ES + N+L+D Y KC A F ++ K +V+WN+++AGY
Sbjct: 357 KSCHGYVLR-NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415
Query: 228 GG-------------------FREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSG 267
G + I+G Q E A+E F M Q + + +++
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------------- 306
+ +AC + L K I+ Y+ ++ IQL +G L+ +
Sbjct: 476 IASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Query: 307 -----------------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
QGL + + G +Q +G
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQ--QGKEI 593
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F M K + + P Y CMVDLL RAG ++ + ++ MP EP+ C
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653
Query: 388 NPDIAEHAARHLFELEP--------LSS-------------------------------- 407
N ++A +AA + L P LS+
Sbjct: 654 NVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
GK H F +GD SH + I L + +G++ +
Sbjct: 714 QIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSR 773
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+GLIS++ G+ +R++KNLR+C DCHS K+ SK REII+ DN RFH
Sbjct: 774 HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKV----YNREIILRDNNRFH 829
Query: 511 HFVDGACSCGDYW 523
+ G CSCGD+W
Sbjct: 830 YIRQGKCSCGDFW 842
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+N+++ GYA G E A+ F RM+ + + P+ + L+ACA+ +
Sbjct: 102 YNSLIRGYASSGLCNE------------AILLFLRMMNSGISPDKYTFPFGLSACAKSRA 149
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G +IHG +++ G FV NSL+ Y CG + + +
Sbjct: 150 KGNGIQIHGLIVK----------------MGYAKDLFVQNSLVHFYAECGEL--DSARKV 191
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA- 396
F+ M E + + M+ AR D ++ +M + E P+
Sbjct: 192 FDEMS-----ERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD----EEVTPNSVTMVCV 242
Query: 397 -RHLFELEPLSSG-KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+LE L +G KV++FI ++ + + L+ +Y + I KR+
Sbjct: 243 ISACAKLEDLETGEKVYAFIR-NSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 165/649 (25%), Positives = 273/649 (42%), Gaps = 194/649 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+L M L + +VT A I C +L ++ +H ++I G+E F+
Sbjct: 260 VLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYA 319
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F++M R+V SW S++ Y E D
Sbjct: 320 KFGNLGDAQKVFQQMFLRDVVSWNSIIAAY--------------------------EQND 353
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
V + ++ G ++ +L + + +AS + +D+ N + +
Sbjct: 354 DPV--TARGFFFKMQLNG---LEPDLLTL------VSLASIAAQSRDYKN------SRSV 396
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H +++ L +++ N++MD YAK + AH F+ I K +VSWN +++GY
Sbjct: 397 HGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGY----- 451
Query: 231 REEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
TQ G A+E + M + +++ N + +LAA A V + G IHG+++
Sbjct: 452 -------TQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLI 504
Query: 290 RHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK--- 331
+ ++ L VG LI + G S WN++I +G G +K
Sbjct: 505 KTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALK 564
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+EG +F +M+ EY ++P+++ Y CMVDLL
Sbjct: 565 LFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ-EYGIKPSLKHYGCMVDLL 623
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG + +F+K MP P ++ C N ++ + A+ LFE++ + G
Sbjct: 624 GRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYV 683
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+V F G+ SH +I
Sbjct: 684 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYA 743
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L L +++K +GY+ K HSE+LA+AFG+IST P S +R+ K
Sbjct: 744 ELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFK 803
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ TK++S R EREI++ D+ RFHHF +G CSCGDYW
Sbjct: 804 NLRVCGDCHNATKFIS----RITEREIVVRDSKRFHHFKNGICSCGDYW 848
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 161/384 (41%), Gaps = 111/384 (28%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEK 64
+ + +F C K L ++HA L+V G V L A LG F++
Sbjct: 77 IDFNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQ 133
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFY--LLIDE---------GVYKACSELKDHRV 113
+ ++V++W SM+ Y G++ E ++ FY LL+ + V KAC L D
Sbjct: 134 IQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD--- 190
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLK 165
G+ ++ ++ + F+ + V ++ M+ + G + +A F++ F ++ L++
Sbjct: 191 GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQ 250
Query: 166 HGKE----------------------------------------IHPHHLKKDDLESDLL 185
+G IH + +K LE +L
Sbjct: 251 NGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKH-GLEFELF 309
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V+N+L++ YAK L A F ++ + +VSWN+++A Y Q D T
Sbjct: 310 VSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAY------------EQNDDPVT 357
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A FF +M ++P+ ++L + + AQ + +K + +HG+++R + V
Sbjct: 358 ARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVV------ 411
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
+ N+++DMY + G I
Sbjct: 412 ---------IGNAVMDMYAKLGVI 426
>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
Length = 677
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 167/632 (26%), Positives = 264/632 (41%), Gaps = 191/632 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL--------------GMFE 63
+ T+ L C +L +L+ V G V +C+ L +F+
Sbjct: 107 STTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFD 166
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
MP ++ +W++M+ + G E + ++ S +++H V D +
Sbjct: 167 GMPRKDRVAWSTMVAGFVTAGRPVEALAMY------------SRMREHGVSDDEVVMVGV 214
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
I+ AC M++G + + HG+ L + + D
Sbjct: 215 IQ----AC----------------MSTGN------ARIGASVHGR------LLRHCMRMD 242
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++ SL+ YAK +L VA F + ++ V+W+A+ I+GF Q G
Sbjct: 243 VVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSAL------------ISGFAQNGRA 290
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ F + +QP + +L L ACA V KLGK IHG++LR ++ +G A+
Sbjct: 291 VEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAV 349
Query: 304 ISI--------------QGLGTGSFV-WNSLIDMYGR--CG-------------AIQKN- 332
+ + L + V WN++I G CG I+ +
Sbjct: 350 LDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDH 409
Query: 333 -----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG +F+ M KE+ +EPA + Y C+VDLLAR+G ++ + +
Sbjct: 410 ATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLA 469
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------- 406
M EP+ A C ++ E A+ + EL P
Sbjct: 470 SMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDK 529
Query: 407 ------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
G H+F+ D SH +I + + +L SE++K+GY
Sbjct: 530 VREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGY 589
Query: 443 MKRIP-----------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ R HSE+LA+AFGL++TSPG+ L +IKNLR+CGDCH KY+SK
Sbjct: 590 VPRTEFVYHDLDEDQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISK 649
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REI++ D RFHHF DGACSCGDYW
Sbjct: 650 IV----DREIVVRDAKRFHHFKDGACSCGDYW 677
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/596 (26%), Positives = 233/596 (39%), Gaps = 181/596 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMP RN SW M+ Y G EE + L L G+ + S L
Sbjct: 375 LFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS---------- 424
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+F C SN+ L+ G ++H +K
Sbjct: 425 ------------------IFFAC---------------SNIVALETGTQVHSLAVKVG-C 450
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
+ + N+L+ Y KCR ++ A FS++ K +VSWN+ LA +E
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDN 510
Query: 234 ------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+ + A+ F M PN+ L+ +L C + K+G
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGS-----------FVWNSLIDMYGRCG 327
++IH ++ + V ALIS+ G F WN++I Y + G
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHG 630
Query: 328 ----AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
AI+ +EGW++F+ M ++Y + P E Y
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL R G F+ MP EP + C N +I + AA LF +EP
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
++G K+HSF+ GD H
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+ +I L LY+ +K GY+ K HSEKLA+A+ L++T G
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P++++KNLR+CGDCH+ K+VS K R+I + D RFHHF +G+CSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTK----RQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 54/304 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+FEKMPERN+ SWT M+ Y + + + ++F + EG+ A L +
Sbjct: 180 LFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGN 239
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-CGRMEMASGEFEEKDFSN-------LS 162
V + + + FE + + +L+++ + ++ A FE N ++
Sbjct: 240 LDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIA 299
Query: 163 LLKHGKEIHPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
L HG I + + D + +L+ A+C + A F +I + +VSWNA+
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNAL 359
Query: 222 LAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ GY G E I G+ Q G E AL + ++ M P+
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
SL+ + AC+ + + G ++H ++ Q + SF N+LI M
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN----------------SFACNALITM 463
Query: 323 YGRC 326
YG+C
Sbjct: 464 YGKC 467
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/345 (18%), Positives = 130/345 (37%), Gaps = 73/345 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGK---- 115
+F+ MP R++ +W SM+ Y G + +L+ + + L + R+G+
Sbjct: 56 VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEA 115
Query: 116 -DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
V+D M+ E N ++ +++ G + MA F+ ++S
Sbjct: 116 RRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW---------- 161
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
NS++ Y + A F K+ +++LVSW M++GY R E
Sbjct: 162 -------------NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG----RIEN 204
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
G A + F +M + + P+ + + L+A + + + + L+ +
Sbjct: 205 HG--------KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFE 256
Query: 295 LSTGVGIALISIQGLGTG----------------SFVWNSLIDMYGRCGAIQKNEGWRYF 338
+G A++++ T + W+++I G I
Sbjct: 257 RDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRI--------- 307
Query: 339 EMMKKEYNMEPAMEQYC--CMVDLLARAGQFDDTLNFMKKMPFEP 381
+ Y +P C ++ LA+ G+ DD +++P EP
Sbjct: 308 DAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP-EP 351
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 246/588 (41%), Gaps = 163/588 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+ + P RNV +WT ++ Y+ G E V+ F ++ +G+ AC +LKD
Sbjct: 193 LLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKD 252
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
G ++ + + + + ++DM+ KCG A F+ L G+
Sbjct: 253 LNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDA--------LGRGRGP 304
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
P N+++D Y K ++ +A F +++ ++++N+++ GY GG
Sbjct: 305 QPW--------------NAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGR 350
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E AL F++M + + + ++ G+L A A + G+ +H + +
Sbjct: 351 LRE------------ALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQ 398
Query: 291 HHIQLSTGVGIALI----------------------------------SIQGLGTGS--- 313
++ +G AL+ + G+G +
Sbjct: 399 RLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEH 458
Query: 314 FVW--------NSL--IDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
F W NS+ I + C + +EG YF+ M+ +N+ P +E Y CM+DLL
Sbjct: 459 FFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLG 518
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------ 406
R+G D+ ++ ++ MP +P++ C N D+A++AA HL +LEP
Sbjct: 519 RSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQ 578
Query: 407 -------------------------------------SGKVHSFIAGDTSHSLVHKISEK 429
+G+VH FI GD SH + +I
Sbjct: 579 MYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVM 638
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
+ + +K GY K HSEKLA+AFGL+S +P P+ +IKN
Sbjct: 639 MEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKN 698
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCHS K +S R REII+ D RFHHF G CSC D+W
Sbjct: 699 LRVCEDCHSAIKLIS----RLWNREIIVRDRSRFHHFRGGVCSCNDFW 742
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 35/181 (19%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----------- 233
L+ + ++ YA+ A F + K +V+W +++G A G ++
Sbjct: 141 LIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVR 200
Query: 234 --------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I+G+++ G A++ F+ M+ + P+ +++ G+L+AC Q+K G +H
Sbjct: 201 NVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLH 260
Query: 286 GYVLRHHIQLSTGVGIALISIQ----------------GLGTGSFVWNSLIDMYGRCGAI 329
V + +S + +ALI + G G G WN++ID Y + G +
Sbjct: 261 MLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHV 320
Query: 330 Q 330
Sbjct: 321 D 321
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 166/667 (24%), Positives = 270/667 (40%), Gaps = 222/667 (33%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV--------------------ELCAFLGMFEKMPE 67
+F+ C + +L+ Q+H+ I G+ ++C +F+ +PE
Sbjct: 20 LFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE 76
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
+VFSW M Y+ + + V+L+ E+ + V D Y Y
Sbjct: 77 PSVFSWNIMFKGYSRIACPKLGVSLYL------------EMLERNVKPDCYTY------- 117
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
F K F+ L+ G+E+H H +K L+S++ +
Sbjct: 118 ------------------------PFLFKGFTRSVALQLGRELHCHVVKYG-LDSNVFAH 152
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-----LGGFREEITGFTQYGD 242
N+L++ Y+ C + +A F + +V+WNAM++GY + + +TGF G
Sbjct: 153 NALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQ 212
Query: 243 GETALEFFSRMIQTD-------------------------------MQPNTISLSGVLAA 271
+ A ++F +M + D ++P+ ++ VL A
Sbjct: 213 VDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTA 272
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-----------SIQGLGT----GSFVW 316
CAQ+ +LG+ I Y+ ++ ++ T VG ALI ++ T F W
Sbjct: 273 CAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTW 332
Query: 317 NSLI-------------DMYGR-------------CGAIQK-------NEGWRYFEMMKK 343
+++ +M+ + G + +EG ++F M
Sbjct: 333 TAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTA 392
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
+ +EP + Y CMVDLL +AG + +K MP +P+S C + ++AE
Sbjct: 393 RHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAE 452
Query: 394 HAARHLFELEPLS-------------------------------------------SGKV 410
A + ELEP + +G V
Sbjct: 453 RAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIV 512
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F+AGD SH +I KL ++ S++K GY K HSEKLA
Sbjct: 513 HEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLA 572
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGLI++ PG +R++KNLRMC DCH K VSK +RE+I+ D RFHHF G+
Sbjct: 573 IAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKV----YDREVIVRDRTRFHHFRHGS 628
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 629 CSCKDYW 635
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 4 KNVTLLLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
K +L + M + PDE T+ L C +L LELG + ++ V+ F+G
Sbjct: 245 KEALMLFREMQTSKIKPDEFTMVSVL--TACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------ 97
+F +P+R+ F+WT+M+ + G EE +N+F ++
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362
Query: 98 DE----GVYKACSELKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRMEMA 149
DE GV AC+ GK + M + E N ++D+ K G ++ A
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEA 419
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 155/596 (26%), Positives = 233/596 (39%), Gaps = 181/596 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMP RN SW M+ Y G EE + L L G+ + S L
Sbjct: 375 LFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTS---------- 424
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+F C SN+ L+ G ++H +K
Sbjct: 425 ------------------IFFAC---------------SNIVALETGTQVHSLAVKVG-C 450
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
+ + N+L+ Y KCR ++ A FS++ K +VSWN+ LA +E
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDN 510
Query: 234 ------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+ + A+ F M PN+ L+ +L C + K+G
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIG 570
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGS-----------FVWNSLIDMYGRCG 327
++IH ++ + V ALIS+ G F WN++I Y + G
Sbjct: 571 QQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIFDLMEERDIFTWNTIITGYAQHG 630
Query: 328 ----AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
AI+ +EGW++F+ M ++Y + P E Y
Sbjct: 631 LGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHY 690
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL R G F+ MP EP + C N +I + AA LF +EP
Sbjct: 691 ACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEP 750
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
++G K+HSF+ GD H
Sbjct: 751 SNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHE 810
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+ +I L LY+ +K GY+ K HSEKLA+A+ L++T G
Sbjct: 811 QIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKG 870
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P++++KNLR+CGDCH+ K+VS K R+I + D RFHHF +G+CSC D+W
Sbjct: 871 MPIQILKNLRICGDCHTFIKFVSHVTK----RQIDIRDGNRFHHFRNGSCSCEDFW 922
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 125/304 (41%), Gaps = 54/304 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+FEKMPERN+ SWT M+ Y + + + ++F + EG+ A L +
Sbjct: 180 LFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGN 239
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-CGRMEMASGEFEEKDFSN-------LS 162
V + + + FE + + +L+++ + ++ A FE N ++
Sbjct: 240 LDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIA 299
Query: 163 LLKHGKEIHPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
L HG I + + D + +L+ A+C + A F +I + +VSWNA+
Sbjct: 300 ALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNAL 359
Query: 222 LAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ GY G E I G+ Q G E AL + ++ M P+
Sbjct: 360 ITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSL 419
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
SL+ + AC+ + + G ++H ++ Q + SF N+LI M
Sbjct: 420 SSLTSIFFACSNIVALETGTQVHSLAVKVGCQFN----------------SFACNALITM 463
Query: 323 YGRC 326
YG+C
Sbjct: 464 YGKC 467
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/345 (18%), Positives = 130/345 (37%), Gaps = 73/345 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGK---- 115
+F+ MP R++ +W SM+ Y G + +L+ + + L + R+G+
Sbjct: 56 VFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEA 115
Query: 116 -DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
V+D M+ E N ++ +++ G + MA F+ ++S
Sbjct: 116 RRVFDGML----ERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW---------- 161
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
NS++ Y + A F K+ +++LVSW M++GY R E
Sbjct: 162 -------------NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG----RIEN 204
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
G A + F +M + + P+ + + L+A + + + + L+ +
Sbjct: 205 HG--------KAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFE 256
Query: 295 LSTGVGIALISIQGLGTG----------------SFVWNSLIDMYGRCGAIQKNEGWRYF 338
+G A++++ T + W+++I G I
Sbjct: 257 RDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRI--------- 307
Query: 339 EMMKKEYNMEPAMEQYC--CMVDLLARAGQFDDTLNFMKKMPFEP 381
+ Y +P C ++ LA+ G+ DD +++P EP
Sbjct: 308 DAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIP-EP 351
>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
Length = 818
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 152/544 (27%), Positives = 222/544 (40%), Gaps = 183/544 (33%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +N LL+HG EIH L+ + LE D+ +L+D YAKC L A F ++ ++L
Sbjct: 282 KSVANTGLLRHGMEIHCFFLR-NQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNL 340
Query: 216 VSWNAMLA-----------------------------------GYALGGFREE------- 233
+WN+++A GY++ G +
Sbjct: 341 TTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQ 400
Query: 234 ----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
I+G G+ E + F M + +QP+ +++S +L ACA +
Sbjct: 401 IKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLAL 460
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALI-----------------SIQ------------- 307
K GKE+H + LR V ALI SIQ
Sbjct: 461 QKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTG 520
Query: 308 --------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
GL S + +L+ G + EGW YF+ M+ +Y +
Sbjct: 521 LAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLV--TEGWEYFDGMETKYGV 578
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAAR 397
+P E Y CMVDLLAR G D+ ++F+++ P +P ++ C N +AE AAR
Sbjct: 579 KPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAAR 638
Query: 398 HLFELEPLSSGK-------------------------------------------VHSFI 414
+LF LEP +S +H F
Sbjct: 639 NLFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFE 698
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFG 460
H +I E+L+RL +IKK GY+ K GH+EKLA+ +G
Sbjct: 699 VDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYG 758
Query: 461 LI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
LI S + +P+RV+KN RMC DCH K++S +R+II+ D RFHHFVDG CSC
Sbjct: 759 LIRSDASRAPVRVMKNTRMCNDCHEVAKHISSL----CDRQIILRDAVRFHHFVDGKCSC 814
Query: 520 GDYW 523
DYW
Sbjct: 815 NDYW 818
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 169/641 (26%), Positives = 264/641 (41%), Gaps = 195/641 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNV-LGYYEEIVNLFYLLIDE---------GVYKACSELKD 110
+F+KM +R+V +W SM+ +++ G Y+E+ L + ++ GV A +++
Sbjct: 176 VFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNS 235
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS-------------------G 151
R GK+++ + + F G+ V +LD++ KC ++ A G
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295
Query: 152 EFEEKDF---------------------------------SNLSLLKHGKEIHPHHLKKD 178
+ DF +NL+ L G +H + +K
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
DL+V N+L+ YAKC + A F+++ + VS+ A+++GY
Sbjct: 356 -FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGY------------V 402
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q G+ E L F M + + P +L+ VL ACA + G G H Y + T
Sbjct: 403 QNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTM 462
Query: 299 VGIALISIQG----LGT-----------GSFVWNSLIDMYGRCGA----------IQKN- 332
+ ALI + + T G WN++I YG G +Q
Sbjct: 463 ICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEG 522
Query: 333 ----------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
EG +F M +++ + P ME Y CMVDLL+RAG F +
Sbjct: 523 LKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEV 582
Query: 371 LNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLS-------------- 406
+F++KMP EP + C N ++ E ++ + +L P S
Sbjct: 583 HSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAV 642
Query: 407 -----------------------------SGKVHSFIAGD-TSHSLVHKISEKLMRLYSE 436
SG VH+F+ G SH + +IS KL L E
Sbjct: 643 GRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVE 702
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+K++GY K HSEKLA+AFG++S SP + V KNLR+CGDC
Sbjct: 703 MKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDC 762
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K++S K R+I + D RFHHF DG C+CGD+W
Sbjct: 763 HTAIKFISLVTK----RDITVRDASRFHHFKDGICNCGDFW 799
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 137/312 (43%), Gaps = 80/312 (25%)
Query: 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER--NVFSWTSMMGMYNVLGYYEEIVN 91
L N ++ + L + EL +F+KMP R NV W ++ Y G YEE ++
Sbjct: 46 NLTNFDVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAID 105
Query: 92 LFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151
L+Y ++ G+ + F AC
Sbjct: 106 LYYKMLGYGITPN----------------RFTFPFVLKAC-------------------- 129
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
S L G+EIH +K+ LES++ V+ +L+DFYAKC L A F K+
Sbjct: 130 -------SALKEASEGREIHCD-IKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMH 181
Query: 212 QKHLVSWNAMLAGYAL--GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
++ +V+WN+M++G++L G + E Q +Q D+ PN+ ++ GVL
Sbjct: 182 KRDVVAWNSMISGFSLHEGSYDEVARLLVQ--------------MQNDVSPNSSTIVGVL 227
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
A AQV + GKEIHG+ +R VG ++ GTG ++D+YG+C I
Sbjct: 228 PAVAQVNSLRHGKEIHGFCVRRGF-----VGDVVV-----GTG------ILDVYGKCQCI 271
Query: 330 QKNEGWRYFEMM 341
+ R F+MM
Sbjct: 272 --DYARRIFDMM 281
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/568 (26%), Positives = 247/568 (43%), Gaps = 151/568 (26%)
Query: 86 YEEIVNLFYLLIDEGVY-----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
Y E + LF +L G Y AC LK R K V++YMI+ + + ++
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 135 PVLDMFIKCGRMEMASGEFEE---------------------------------KDFSN- 160
VL M +KCG M A F+E +DFS+
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDA 230
Query: 161 --------------LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
L L+ G+++H LK + D+ V +L+D Y+KC ++ A C
Sbjct: 231 GSRMFVTMIRASAGLGLIFAGRQLHSCSLKTG-VGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F ++ +K V WN+++AGYAL G+ EE AL + M + ++ + + S
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEE------------ALSMYYEMRDSGVKIDNFTFS 337
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG---------------T 311
++ CA++ + K+ H ++RH L AL+ +
Sbjct: 338 IIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397
Query: 312 GSFVWNSLIDMYGRCG----AIQ-----------------------------KNEGWRYF 338
WN+LI YG G A++ + GW F
Sbjct: 398 NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIF 457
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
E M +++ ++P Y CM++LL R G D+ +K PF+P+ C N
Sbjct: 458 ESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKN 517
Query: 389 PDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR--- 445
++ + AA L+ + P K+ +++ ++ ++ E+ L EI K GY+ +
Sbjct: 518 FELGKFAAEKLYGMGP---EKLSNYVVLLNIYNRSGRL-EEAAALMLEISKHGYVPQDKF 573
Query: 446 -IPACG---------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
+P HSEKLA+AFGLI+TS +PL+++++ R+CGDCHS K ++ +
Sbjct: 574 LLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTR- 632
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFHHF DG+CSCGDYW
Sbjct: 633 ---REIVVRDASRFHHFKDGSCSCGDYW 657
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 255/595 (42%), Gaps = 145/595 (24%)
Query: 35 LNNLELGIQVHAHLI------VCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYY 86
L+ LE Q+HAH+I + L F + N + S+T N L Y
Sbjct: 88 LSTLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVY 147
Query: 87 EEIVNLFYLL---IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
++ + + + + V KAC ++ ++GK+++ +++ + + V ++ M+ +C
Sbjct: 148 AQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGEC 207
Query: 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+E A F++ + + D+ S + +L+D YAKC +L +A
Sbjct: 208 ACVEYARLVFDK-------------------MMERDVVSWIPTTTALLDMYAKCGHLGLA 248
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F+ + QK +VSW AM+AG EE T + F RM + ++ PN I
Sbjct: 249 RQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGT------------KLFIRMQEENIFPNEI 296
Query: 264 S----------------LSGVLAACAQVKGF-KLGKE------------IHGYVLRHHIQ 294
+ L + A C + +L E I G+ + + +
Sbjct: 297 TMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE 356
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
+ + A + QG+ + L+ G + EG + FE M + + P +E Y
Sbjct: 357 EALDI-FAEMERQGVKPNDITFIGLLHACSHAGLV--TEGKKLFEKMVHTFGLVPQIEHY 413
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEP 404
CMVDLL RAG D+ +K MP +P++ C NP + E AA L E+EP
Sbjct: 414 GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEP 473
Query: 405 LS-------------------------------------------SGKVHSFIAGDTSHS 421
+ +G VH F+ GD SH
Sbjct: 474 ENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHP 533
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+ +I+E L + ++ + GY+ K HSEKLA+AFGLIST+P
Sbjct: 534 QIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPS 593
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
+P+R++KNLR+C DCH+ TK +SK R II+ D RFHHF +G CSCGDY
Sbjct: 594 TPIRIVKNLRVCNDCHAATKLLSKIYG----RVIIVRDRNRFHHFREGYCSCGDY 644
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 158/600 (26%), Positives = 265/600 (44%), Gaps = 154/600 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MP R+ S+ +++ + G+ + + + + ++G +ACS+L D
Sbjct: 111 VFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLD 170
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG 167
R GK ++ ++ N V+ + DM+ KCG ++ A F+ +K+ + +L+ G
Sbjct: 171 LRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISG 230
Query: 168 --KEIHPHH-------LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
K +P+ ++ L+ DL+ +++++ Y +C + A F K+ +K + W
Sbjct: 231 YVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICW 290
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
M+ GYA Q G E A F M++ +++P++ ++S ++++CA++
Sbjct: 291 TTMIVGYA------------QNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASL 338
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSFV------------WNSLIDMY 323
G+ +HG V+ I S V AL+ + G+ + V WN++I Y
Sbjct: 339 YHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGY 398
Query: 324 GRCGAI-----------QKN----------------------EGWRYFEMMKKEYNMEPA 350
+ G + Q+N EG +YF+ + E+ + P
Sbjct: 399 AQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPT 457
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEP---------SSAEPCNPDIAEHAARHLFE 401
++ Y CM+ LL R+G D ++ ++ MP EP S + AE AA HLFE
Sbjct: 458 LDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAELAASHLFE 517
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
L+P ++G KVH F++ D
Sbjct: 518 LDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDH 577
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
H V KI +L RL S +++IGY K HSEKLALAF LI
Sbjct: 578 YHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRK 637
Query: 465 SPG-SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G +P+R+IKN+R+C DCH K+ S R IIM D+ RFHHF G CSC D W
Sbjct: 638 PNGVAPIRIIKNIRVCDDCHVFMKFASIT----ISRPIIMRDSNRFHHFFGGKCSCNDNW 693
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 91/244 (37%), Gaps = 65/244 (26%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------- 233
D ++N L+ YAK L A F + ++ + SWN +L+ YA G E
Sbjct: 57 DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116
Query: 234 ----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
I F G AL+ RM + QP S L AC+Q+ + GK+
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQ 176
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK------------ 331
IHG ++ + LG +FV N++ DMY +CG I K
Sbjct: 177 IHGRIV----------------VADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKN 220
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
NE F M+ ++P + +++ R G+ DD N
Sbjct: 221 VVSWNLMISGYVKMGNPNECIHLFNEMQLS-GLKPDLVTVSNVLNAYFRCGRVDDARNLF 279
Query: 375 KKMP 378
K+P
Sbjct: 280 IKLP 283
>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Glycine max]
Length = 611
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 143/480 (29%), Positives = 210/480 (43%), Gaps = 141/480 (29%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H H LK ESD + NSL+ FYA C L +A F K+ +++ VSWN M+ YA
Sbjct: 150 GKQVHAHVLKHG-FESDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYA 208
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GG +TAL F M Q P+ ++ V++ACA + LG +H
Sbjct: 209 KGGI------------FDTALRMFGEM-QRVHDPDGYTMQSVISACAGLGALSLGLWVHA 255
Query: 287 YVLRH--------------HIQLSTGVGIALISIQGLGTGSF----VWNSLI-------- 320
Y+L+ + + G I+ Q + +F WNS+I
Sbjct: 256 YILKKCDKNMVDDVLVNTCLVDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGE 315
Query: 321 -----DMYGRCGAIQK---------------------NEGWRYFEMMKKEYNMEPAMEQY 354
+ Y R ++K +EG +F+MM KEYN+EP +E Y
Sbjct: 316 AKAALNYYVRMVKVEKIVPNSITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHY 375
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC-----NPDIAEHAARHLFELE 403
C+VDL ARAG+ ++ LN + +M +P + + C + +++E A+ +FE E
Sbjct: 376 GCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESE 435
Query: 404 ----------------------------------------PLSS-----GKVHSFIAGDT 418
P S G VH F AGDT
Sbjct: 436 GSVCSSGVYVLLSKVYASACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDT 495
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLIS 463
+H I + + + +++ IGY+ HSE+LA+AFG+++
Sbjct: 496 THPKSENIYKVVTEIEEKLESIGYLPDYSGAPMVDEVNDGKLNTLRLHSERLAIAFGILN 555
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ P P+RV KNLR+C DCH TK +S R EII+ D RFHHF DG CSC DYW
Sbjct: 556 SKPDVPIRVFKNLRVCNDCHRVTKLIS----RIYNVEIIVRDRARFHHFKDGTCSCMDYW 611
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 35/163 (21%)
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ---PNTISLSGVLAACAQ 274
WN ++ YA T A+E + M+ + + P+ + VL ACA
Sbjct: 93 WNTLIRVYARS---------TNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAY 143
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
GK++H +VL+H G + +++ NSL+ Y CG + E
Sbjct: 144 TFSLCEGKQVHAHVLKH----------------GFESDTYICNSLVHFYATCGCLDLAEK 187
Query: 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
Y + E + + M+D A+ G FD L +M
Sbjct: 188 MFYKMSERNEVS-------WNIMIDSYAKGGIFDTALRMFGEM 223
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 157/588 (26%), Positives = 244/588 (41%), Gaps = 164/588 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKD 110
+F +M ++++ SW++++ Y YEE + LF +++DE V ACS L
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLV 304
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK V+ ++ + E ++ ++ M+ C + A +K FS L
Sbjct: 305 VITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTA-----QKLFSESCCL------ 353
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
D + NS++ Y KC ++ A F + K VSW+AM++GYA
Sbjct: 354 ------------DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYA---- 397
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+ FT+ L F M +P+ L V++AC + GK IH Y+ +
Sbjct: 398 --QQDRFTE------TLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRK 449
Query: 291 HHIQLSTGVGIALISI--------------QGLG-TGSFVWNSLIDMYGRCGAIQK---- 331
+ ++++ +G LI++ +GL G WN+LI G + K
Sbjct: 450 NGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKT 509
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+EG R+F M +E+ + P ++ Y CMVDLL
Sbjct: 510 FSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLG 569
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEP-------- 404
RAG + ++ MP P + C + + E R L EL P
Sbjct: 570 RAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVL 629
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ G+VH F+AGD +H I
Sbjct: 630 LSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHM 689
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L + ++K GY K HSEKLA+AFGLI+ P +P+R++KN
Sbjct: 690 LDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKN 749
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K +SKA REI++ D +RFHHF G+CSC DYW
Sbjct: 750 LRICNDCHTAAKLISKA----FNREIVVRDRHRFHHFKQGSCSCMDYW 793
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 154/338 (45%), Gaps = 46/338 (13%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---D 157
++++CS GK + D+++ + F+ + ++ +++M+ CG + A F+ D
Sbjct: 132 LFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLD 191
Query: 158 FSNLSLLKHGKEIHPHHLKKDDL-----ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
+ + + G + + + D+ E +++ +NS++ + K ++ A F+++KQ
Sbjct: 192 MVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQ 251
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K LVSW+A+++ Y EE AL F M + + + + VL+AC
Sbjct: 252 KDLVSWSALISCYEQNEMYEE------------ALILFKEMNANGIMVDEVVVLSVLSAC 299
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI----------SIQGLGTGS-----FVWN 317
+++ GK +HG V++ I+ + ALI + Q L + S WN
Sbjct: 300 SRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWN 359
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
S+I Y +CG I+K F+ M + N+ + M+ A+ +F +TL ++M
Sbjct: 360 SMISGYVKCGEIEKARA--LFDSMPDKDNV-----SWSAMISGYAQQDRFTETLVLFQEM 412
Query: 378 PFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFI 414
E + + A HL L+ GK +H++I
Sbjct: 413 QIEGTKPDETILVSVISACTHLAALD---QGKWIHAYI 447
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 156/619 (25%), Positives = 262/619 (42%), Gaps = 198/619 (31%)
Query: 33 PKLNNL-ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVN 91
P L+ L E H H V++ + +F++MP R+V SW +++ G YEE +N
Sbjct: 126 PHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALN 185
Query: 92 LFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
+ + E + +E + GK+++ Y I F+ + + ++DM+
Sbjct: 186 MVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYA 245
Query: 142 KCGRMEMA------------------------SGEFEEK-----------------DFSN 160
KC ++E++ +G F++ FS+
Sbjct: 246 KCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSS 305
Query: 161 -------LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-- 211
L+ L GK++H + + + + + + +SL+D YAKC +K+A F+KI+
Sbjct: 306 VIPACAHLTALNLGKQLHAY-IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMC 364
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
+ +VSW A++ G A+ +G A+ F M+ ++P ++ VL A
Sbjct: 365 DRDMVSWTAIIMGCAM------------HGHALDAVSLFEEMLVDGVKPCYVAFMAVLTA 412
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
C+ L+D
Sbjct: 413 CSHA------------------------------------------GLVD---------- 420
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------E 385
EGW+YF M++++ + P +E Y + DLL RAG+ ++ +F+ M EP+ +
Sbjct: 421 -EGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLA 479
Query: 386 PC----NPDIAEHAARHLFELEPLSSG--------------------------------- 408
C N ++AE + ++P + G
Sbjct: 480 ACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKT 539
Query: 409 ----------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------K 444
KVH+F+AGD SH KI+E L L +++K GY+ K
Sbjct: 540 PACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHK 599
Query: 445 RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
R HSE+LA+AFG+IST+ G+ +RVIKN+R+C DCH+ K+++K REII+
Sbjct: 600 RDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVG----REIIVR 655
Query: 505 DNYRFHHFVDGACSCGDYW 523
DN RFHHF +G+CSCGDYW
Sbjct: 656 DNSRFHHFKNGSCSCGDYW 674
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 165/640 (25%), Positives = 256/640 (40%), Gaps = 172/640 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
+ T+ + + C KL + G Q+HAH++ G F+ +F+
Sbjct: 129 SYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFD 188
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+ R+ S+T+++ Y + GY + LF D KDV +
Sbjct: 189 QSNFRDAISFTALIAGYALWGYMDRARQLF----------------DEMPVKDVVSWNAM 232
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-- 181
I + L +F + + E S LS + + + +E
Sbjct: 233 IAGYAQMGRSKEALLLFEDMRKANVPPNE--STIVSVLSACAQSNALDLGNSMRSWIEDR 290
Query: 182 ---SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
S+L + N+L+D Y+KC L+ A F + ++ ++SWN M+ GY T
Sbjct: 291 GLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGY------------T 338
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH------- 291
+ AL F M+ + ++P I+ +L +CA + LGK IH Y+ ++
Sbjct: 339 HMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTS 398
Query: 292 ----HIQLSTGVGIALISIQ---GLGTGSFV-WNSLI---DMYGRCG------------A 328
I L G + + Q G+ S WN++I M+G+
Sbjct: 399 LSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDG 458
Query: 329 IQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
I+ NE G ++F M ++Y + P + Y CM+DLL RAG F++
Sbjct: 459 IEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEA 518
Query: 371 LNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSGK----------- 409
+ ++ M +P A + ++ E A LFELEP + G
Sbjct: 519 ESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGA 578
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
VH F+ GD H I L + ++
Sbjct: 579 GKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQL 638
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K G++ K HSEKLA+AFGLIST PG+P+R+IKNLR+C +CH
Sbjct: 639 KVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCH 698
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S TK +SK REII D RFHHF DG+CSC DYW
Sbjct: 699 SATKLISKI----FNREIIARDRNRFHHFKDGSCSCNDYW 734
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 86/334 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAF--------------------LGMFEKMPE 67
+ +C + + Q+HAH+I G+ F + +F + E
Sbjct: 35 LLSKCQSIRTFK---QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEE 91
Query: 68 RNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKD 116
N+F W SM+ G+ L +V F +I GV K+C++L GK
Sbjct: 92 PNLFIWNSMIRGLSMSLSPALALV-FFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQ 150
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ +++ + F + + +++M+ + G M A F++ +F
Sbjct: 151 IHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNF------------------ 192
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
D + +L+ YA Y+ A F ++ K +VSWNAM+AGYA
Sbjct: 193 -----RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYA---------- 237
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q G + AL F M + ++ PN ++ VL+ACAQ LG + +
Sbjct: 238 --QMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSW--------- 286
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
I +GL + + N+LIDMY +CG +Q
Sbjct: 287 -------IEDRGLCSNLKLVNALIDMYSKCGDLQ 313
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 38/213 (17%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC--KFSKIKQKHLVSWNAMLAGY 225
K+IH H + K L + L + L++F A R +++ F+ I++ +L WN+M
Sbjct: 46 KQIHAH-IIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSM---- 100
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I G + AL FF RMI + ++PN+ + +L +CA++ GK+IH
Sbjct: 101 --------IRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
+VL+ G + F+ SLI+MY + G + +++ +
Sbjct: 153 AHVLK----------------LGFVSDVFIHTSLINMYAQSGEMNNA------QLVFDQS 190
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
N A+ + ++ A G D +MP
Sbjct: 191 NFRDAI-SFTALIAGYALWGYMDRARQLFDEMP 222
>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
Length = 633
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 165/642 (25%), Positives = 257/642 (40%), Gaps = 214/642 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHL--------IVCGVEL------CAFL----GMFEKMP 66
Y + ++C L G VHAH+ IV G L C L +FEKMP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 67 ERNVFSWTSMMGMY-------NVLGYYEEIVNLFYL---LIDEGVYKACSELKDHRVGKD 116
+R+ +WT+++ Y + L ++ +++ Y V KA + + G
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRME----------------------------- 147
++ + + F+ N V +LD++ + G M+
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242
Query: 148 ----------MASGEFEEKDFSNLSL---------LKHGKEIHPHHLKKDDLESDLLVNN 188
M F FS SL L+ GK +H + +K + + N
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGN 301
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+D YAK + A F ++ ++ +VSWN++L YA Q+G G+ A+
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA------------QHGFGKEAVW 349
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
+F M + ++PN IS VL AC+
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSH---------------------------------- 375
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+ L+D EGW Y+E+MKK+ + P Y +VDLL RAG +
Sbjct: 376 --------SGLLD-----------EGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLN 415
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
L F+++MP EP++A C N ++ +AA H+FEL+P G
Sbjct: 416 RALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYA 475
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
+H F+A D H +I+ K + +
Sbjct: 476 SGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLA 535
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+IK++GY+ + + HSEK+ALAF L++T PGS + + KN+R+CGD
Sbjct: 536 KIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGD 595
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K SK REII+ D RFHHF DG CSC DYW
Sbjct: 596 CHTAIKLASKVVG----REIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+YA +F C LE G VHA++I G +L AF G +F+++
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+R+V SW S++ Y G+ +E V F
Sbjct: 324 AKRDVVSWNSLLTAYAQHGFGKEAVWWF 351
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 162/611 (26%), Positives = 254/611 (41%), Gaps = 190/611 (31%)
Query: 86 YEEIVNLFYLLIDEGVY-----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
Y E + LF +L G Y AC LK R K V++YMI+ + + ++
Sbjct: 111 YHEALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRN 170
Query: 135 PVLDMFIKCGRMEMASGEFEE---------------------------------KDFSN- 160
VL M +KCG M A F+E + FS+
Sbjct: 171 RVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDA 230
Query: 161 --------------LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206
L L+ G+++H LK + D+ V +L+D Y+KC ++ A C
Sbjct: 231 GSRMFVTMIRASAGLGLIFAGRQLHSCSLKTG-VGGDVFVACALIDMYSKCGSIEDAQCV 289
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F ++ +K V WN+++AGYAL G+ EE AL + M + ++ + + S
Sbjct: 290 FDQMPEKTTVGWNSIIAGYALHGYSEE------------ALSMYYEMRDSGVKIDNFTFS 337
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG---------------T 311
++ CA++ + K+ H ++RH L AL+ +
Sbjct: 338 IIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHK 397
Query: 312 GSFVWNSLIDMYGRCG----AIQ-----------------------------KNEGWRYF 338
WN+LI YG G A++ + GW F
Sbjct: 398 NVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIF 457
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
E M +++ ++P Y CM++LL R G D+ +K PF+P+ C N
Sbjct: 458 ESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKN 517
Query: 389 PDIAEHAARHLFELEP--LS-----------SGKV------------------------- 410
++ + AA L+ + P LS SG++
Sbjct: 518 FELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIE 577
Query: 411 -----HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR----IPACG---------HS 452
+ FI+GD H+ +I +KL L EI K GY+ + +P HS
Sbjct: 578 IKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHS 637
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI+TS +PL+++++ R+CGDCHS K ++ + REI++ D RFHHF
Sbjct: 638 EKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTR----REIVVRDASRFHHF 693
Query: 513 VDGACSCGDYW 523
DG+CSCGDYW
Sbjct: 694 KDGSCSCGDYW 704
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 167/553 (30%), Positives = 225/553 (40%), Gaps = 160/553 (28%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL---IDEGVYKA-CSELKDHRVGK 115
MF MP RN SW +M+ G NLF D ++ A S D +
Sbjct: 124 AMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQ 183
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK------------------D 157
+Y ++ N V+ ++K R A F+
Sbjct: 184 KAMEYFRAMPVR-NLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLG 242
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
SNLS L G+++H +K L + V SL+ Y KC L A F ++ K +V+
Sbjct: 243 CSNLSALGFGRQVHQWCMKLP-LGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WNAM++GYA Q+G G A++ F +M + P+ I+L VL AC
Sbjct: 302 WNAMISGYA------------QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC----- 344
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
IH TG L D +C
Sbjct: 345 ------IH-----------TG--------------------LCDFGIQC----------- 356
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
FE M++ YN+EP ++ Y CMVDLL RAG + +N + MPFEP + C
Sbjct: 357 FETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYK 416
Query: 388 NPDIAEHAARHLFELEPLSSGKV------------------------------------- 410
N + AE AAR L E +P ++G
Sbjct: 417 NLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWM 476
Query: 411 ------HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACG 450
H F + D H + I +KL RL +K +GY +K
Sbjct: 477 EIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMR 536
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFGLISTSPG LR+ KNLR+CGDCH+ K +SK E +REII+ D RFH
Sbjct: 537 HSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIE----DREIILRDTTRFH 592
Query: 511 HFVDGACSCGDYW 523
HF G CSCGDYW
Sbjct: 593 HFRGGHCSCGDYW 605
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 164/651 (25%), Positives = 258/651 (39%), Gaps = 216/651 (33%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL------------ 59
PD T T AL C +L +L G V G V +C+ L
Sbjct: 104 ARPDSTTFTLAL--SACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGD 161
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F++MP R+ +W++M+ + G + + ++ + ++GV +AC+
Sbjct: 162 AVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
++ R+G V+ + LL+HG
Sbjct: 222 ARNVRMGASVHGH------------------------------------------LLRHG 239
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ D++ SL+D YAK L VA F + ++ VSW+AM
Sbjct: 240 ------------MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM------ 281
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+GF Q G + AL F M + +QP++ +L L AC+ + KLG+ +HG+
Sbjct: 282 ------ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGF 335
Query: 288 VLRHHIQLSTGVGIALISI----QGLGTGSFVWNSLID--------MYGRCGAIQKN--- 332
++R + +G A I + L + ++N + D M CGA +
Sbjct: 336 IVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDA 394
Query: 333 ---------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVD 359
EG +F M + + PA + Y C+VD
Sbjct: 395 LTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVD 454
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK 409
LLAR+G ++ + + M EP+ A C ++ E A ++ EL+P G
Sbjct: 455 LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGV 514
Query: 410 V-------------------------------------------HSFIAGDTSHSLVHKI 426
+ H+F+ D SH +I
Sbjct: 515 LALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEI 574
Query: 427 SEKLMRLYSEIKKIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRV 472
K+ +L E++K+GY+ R HSEKLA+AFGL++T PG+ L +
Sbjct: 575 VSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVI 634
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+CGDCH KY+SK +REI++ D RFHHF DG CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIA----DREIVVRDAKRFHHFKDGVCSCRDYW 681
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 212/489 (43%), Gaps = 137/489 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K + ++ ++ G+ IH ++ S + V NSL+ YA C + A+ F K+ +
Sbjct: 126 FLIKAVTTMADVRLGETIHSVVIR-SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K LV+WN++ I GF + G E AL ++ M ++P+ ++ +L+AC
Sbjct: 185 KDLVAWNSV------------INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWN 317
A++ LGK +H Y+++ + + L+ + + + S W
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 318 SLI-----DMYGR-------------------------------CGAIQKNEGWRYFEMM 341
SLI + +G+ CG ++ EG+ YF M
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVK--EGFEYFRRM 350
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDI 391
++EY +EP +E + CMVDLLARAGQ ++K MP +P+ C + D+
Sbjct: 351 REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDL 410
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
AE A + +LEP SG
Sbjct: 411 AEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGN 470
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGHSEK 454
+VH F+ GD SH I KL + ++ GY+ +I HSEK
Sbjct: 471 RVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEK 530
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
+A+AF LIST SP+ V+KNLR+C DCH K VSK REI++ D RFHHF +
Sbjct: 531 IAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV----YNREIVVRDRSRFHHFKN 586
Query: 515 GACSCGDYW 523
G+CSC DYW
Sbjct: 587 GSCSCQDYW 595
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 154/591 (26%), Positives = 239/591 (40%), Gaps = 176/591 (29%)
Query: 23 VTYALIFQRCPK-LNNLELGIQVHAHLIVCGV--------------ELCAFLG----MFE 63
VTY + C K ++ LG+QVH ++ GV CA +G +F+
Sbjct: 123 VTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFD 182
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
M R+V SWTS++ LG +E +LF D +D +
Sbjct: 183 GMQVRSVVSWTSLLSGLARLGQVDEARDLF----------------DRMPERDTVSWTAM 226
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDD 179
I A R L+MF + +++ EF + L L+ G+ + + + +
Sbjct: 227 IDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVY-MSRQG 285
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ D V N+L+D Y+KC ++ A F + + +W A++ G A+ G+ EE
Sbjct: 286 IKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEE------ 339
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
A+E F RMI+ P+ ++ GVL AC
Sbjct: 340 ------AIEMFHRMIRVSETPDEVTFIGVLTACTHA------------------------ 369
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
L+D +G +F M + YN+ P + Y C++D
Sbjct: 370 ------------------GLVD-----------KGREFFLSMIEAYNIAPNVVHYGCIID 400
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS-- 407
LL RAG+ + L+ + +MP P+S C N +I E A L EL+P +S
Sbjct: 401 LLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMV 460
Query: 408 -----------------------------------------GKVHSFIAGDTSHSLVHKI 426
G +H F+AGD SH + +I
Sbjct: 461 YILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEI 520
Query: 427 SEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRV 472
KL + S++ +GY + HSEKLA+AF L+S+ P + +R+
Sbjct: 521 YSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRI 580
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLRMC DCH+ K +S R RE+++ D RFHHF G CSC DYW
Sbjct: 581 VKNLRMCLDCHNAIKLIS----RLYGREVVVRDRTRFHHFRHGFCSCKDYW 627
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 36/189 (19%)
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ- 274
V+WNA+++G+ GG E G F M + P ++ VL+AC +
Sbjct: 88 VAWNALISGHNRGGRFGESCG------------SFVDMARAGAAPTPVTYVSVLSACGKG 135
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+ LG ++HG V+ G G+ L ++ V N+L+DMY C +
Sbjct: 136 TRDVLLGMQVHGRVV--------GSGV-LPDLR-------VENALVDMYAECADM--GSA 177
Query: 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEH 394
W+ F+ M+ ++ + ++ LAR GQ D+ + +MP + + D
Sbjct: 178 WKVFDGMQVR-----SVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVW 232
Query: 395 AARHLFELE 403
AAR LE
Sbjct: 233 AARFREALE 241
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ + M +N T + C +L LE+G V ++ G+++ AF+G
Sbjct: 242 MFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYS 301
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DE----G 100
+F+ M R+ F+WT+++ V GY EE + +F+ +I DE G
Sbjct: 302 KCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIG 361
Query: 101 VYKACSELKDHRVGKDVYDYMI-SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
V AC+ G++ + MI + N ++D+ + G++ A ++ +
Sbjct: 362 VLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMT 421
Query: 160 NLSLL---------KHGK----EIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
S + HG E+ L + D E+ +V L + YAKC
Sbjct: 422 PNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENS-MVYILLSNIYAKC 471
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 170/576 (29%), Positives = 237/576 (41%), Gaps = 171/576 (29%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER-NVFSWTSMMGMYNVLG 84
A +F+ P N + V A + C ++ A +F PE+ + WT+M+ Y G
Sbjct: 128 AAMFRIMPVRNAVSWNAMVAA--LACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTG 185
Query: 85 YYEEIVNLF----------YLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++ + F + + G K RV K + + I + NA
Sbjct: 186 NVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSI---VQPNASTLS 242
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194
VL + C SNLS L G+++H +K L ++ V SL+ Y
Sbjct: 243 SVL---LGC---------------SNLSALGFGRQVHQWCMKLP-LSRNVTVGTSLLSMY 283
Query: 195 AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
KC L A F ++ K +V+WNAM++GYA Q+G G A++ F +M
Sbjct: 284 CKCGDLNDACKVFDEMSTKDIVAWNAMISGYA------------QHGGGMQAIKLFEKMK 331
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314
+ P+ I+L VL AC IH TG
Sbjct: 332 DEGVVPDWITLLAVLTAC-----------IH-----------TG---------------- 353
Query: 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
L D +C FE M++ Y +EP ++ Y CMVDLL RAG + +N +
Sbjct: 354 ----LCDFGIQC-----------FETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMI 398
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGKV-------------- 410
MPFEP + C N + AE AAR L E +P ++G
Sbjct: 399 HSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWA 458
Query: 411 -----------------------------HSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
H F + D H + I +KL RL +K +G
Sbjct: 459 DVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMG 518
Query: 442 Y--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y +K HSEKLA+AFGLISTSPG LR+ KNLR+CGDCH+ K
Sbjct: 519 YVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAK 578
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK E +REII+ D RFHHF G CSCGDYW
Sbjct: 579 LISKIE----DREIILRDTTRFHHFRGGHCSCGDYW 610
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 165/623 (26%), Positives = 261/623 (41%), Gaps = 173/623 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ N + V + V +E A F+ MPER+V SW +M+ Y G E
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLE--AARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242
Query: 88 EIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
E++ LF +++ G V ACS D + + + + + N V+ +L
Sbjct: 243 EVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALL 302
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
DM+ KCG + A F+E L ++ + N+++ Y +
Sbjct: 303 DMYAKCGSIGAARRIFDE-----LGAYRNS-----------------VTWNAMISAYTRV 340
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
L A F+ + +++V+WN+M+AGYA Q G A+E F MI
Sbjct: 341 GNLDSARELFNTMPGRNVVTWNSMIAGYA------------QNGQSAMAIELFKEMITAK 388
Query: 258 -MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------- 306
+ P+ +++ V++AC + +LG + ++ + I+LS A+I +
Sbjct: 389 KLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 448
Query: 307 ----QGLGTGSFV-WNSLIDMYG---------------RCGAIQKN-------------- 332
Q + T V +N+LI + + G I+ +
Sbjct: 449 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 508
Query: 333 ----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------- 381
EG + FE +K +PA++ Y CMVDLL R G+ +D M++MP EP
Sbjct: 509 GLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 563
Query: 382 ---SSAEPCNPDIAEHAARHLFELEPLSSG------------------------------ 408
+S ++ E AA LFELEP +SG
Sbjct: 564 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 623
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------ 449
K+H FI D SH I + L+ L ++++ GY+ +C
Sbjct: 624 KKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD-KSCVLRDVE 682
Query: 450 ---------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEKLA+ + L+ + G+ +RV+KNLR+C DCH+ K +SK E R
Sbjct: 683 EEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEG----RV 738
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
II+ DN RFH F DG CSC DYW
Sbjct: 739 IIVRDNNRFHCFNDGLCSCKDYW 761
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 137/345 (39%), Gaps = 73/345 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F NVF +TSM+ Y+ L + ++V +F + + C V D + Y
Sbjct: 56 LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHM------QGCG------VRPDAFVY 103
Query: 121 MISIKFEGN-----------------ACVKRPVLDMFIKCGRMEMASGEFEE-----KDF 158
I IK GN A V+ V+DM+ + G + A F+E +
Sbjct: 104 PILIKSAGNGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKV 163
Query: 159 SNLSLLKHG-----KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
++ + + G E L E +++ +++ YAK + L+ A F + ++
Sbjct: 164 ADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPER 223
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+VSWNAML+GYA G EE+ L F M+ ++P+ + V++AC+
Sbjct: 224 SVVSWNAMLSGYAQNGLAEEV------------LRLFDEMVNAGIEPDETTWVTVISACS 271
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
L + + + IQL+ FV +L+DMY +CG+I
Sbjct: 272 SRGDPCLAASLVRTLHQKQIQLNC----------------FVRTALLDMYAKCGSIGAAR 315
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
R F+ + N + M+ R G D MP
Sbjct: 316 --RIFDELGAYRN----SVTWNAMISAYTRVGNLDSARELFNTMP 354
>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 169/651 (25%), Positives = 266/651 (40%), Gaps = 216/651 (33%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAH---------LIVCGVELCAF-------- 58
PD T T AL C +L +L G V + VC L +
Sbjct: 99 ARPDSTTFTLAL--SACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDD 156
Query: 59 -LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSE 107
+ +F++M +R+ +W++M+ + G + + ++ L DE GV +AC+
Sbjct: 157 AVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAA 216
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
D R+G V+ Y LL+H
Sbjct: 217 TGDARMGASVHGY------------------------------------------LLRHA 234
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
++ D++++ SL+D YAK A F + ++ VSW+A+
Sbjct: 235 ------------MQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSAL------ 276
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+ QYG+ + AL F M + + PN+ + G L AC+ + KLGK IHG+
Sbjct: 277 ------ISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGF 330
Query: 288 VLRHHIQLSTGVGIALISI----QGLGTGSFVWNSLID--------MYGRCGA------- 328
+LR ++L VG A+I + L + +++ ++ M CGA
Sbjct: 331 ILRT-LELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDA 389
Query: 329 ------IQKNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVD 359
+++NE G +F M EY +EP + C+VD
Sbjct: 390 LSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVD 449
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP----- 404
LLAR+G ++ + + +P+ + C ++ E A + EL+P
Sbjct: 450 LLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGV 509
Query: 405 --LSS------------------------------------GKVHSFIAGDTSHSLVHKI 426
L S G +H+F+ D SH +I
Sbjct: 510 LALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQI 569
Query: 427 SEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRV 472
+ +M+L SE++K+GY+ + HSE+LA AFGL++TSPG+ L V
Sbjct: 570 LQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVV 629
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+CGDCH KY+SK +REI++ D RFHHF DGACSCGDYW
Sbjct: 630 IKNLRVCGDCHDAIKYMSKIA----DREIVVRDAKRFHHFKDGACSCGDYW 676
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 150/590 (25%), Positives = 251/590 (42%), Gaps = 176/590 (29%)
Query: 49 IVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108
+ CG+ + A +F++MP RN SW +++ Y G Y E LF L+ +E
Sbjct: 178 VKCGMMIDA-CRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREE--------- 227
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
F CG A+ + + L ++ G+
Sbjct: 228 -------------------------------FYDCGPRTFAT---MIRASAGLEIIFPGR 253
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H +K L D+ V+ +L+D Y+KC L+ AHC F ++ K +V WN+++AGYAL
Sbjct: 254 QLHSCAIKAG-LGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALH 312
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G+ EE AL+ + M + ++ + + S ++ C+++ K++H +
Sbjct: 313 GYSEE------------ALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASL 360
Query: 289 LRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYGRCG----AI 329
+R+ L AL+ + + + WN+LI YG G AI
Sbjct: 361 VRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAI 420
Query: 330 QKNE-----------------------------GWRYFEMMKKEYNMEPAMEQYCCMVDL 360
E GW F+ M +++ ++P + CM++L
Sbjct: 421 DMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIEL 480
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL----- 405
L R G D+ ++K PF+P++ C N ++ + AA L+ +EP
Sbjct: 481 LGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNY 540
Query: 406 --------SSGKV------------------------------HSFIAGDTSHSLVHKIS 427
SSGK+ H+F++GD H + K+
Sbjct: 541 IVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVV 600
Query: 428 EKLMRLYSEIKKIGYMKR-----IPACG---------HSEKLALAFGLISTSPGSPLRVI 473
K+ L I K+GY+ +P HSEKLA+A+GL++T +PL+++
Sbjct: 601 GKVDELMLNISKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIV 660
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++ R+C DCHS K ++ K REI++ D RFHHF DG+CSCGDYW
Sbjct: 661 QSHRICSDCHSVIKLIAMITK----REIVIRDASRFHHFRDGSCSCGDYW 706
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFR 231
+++ + E D + N ++ + KC + A F ++ ++ VSW +++GY G +
Sbjct: 156 NYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYV 215
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E F + EF+ D P T + ++ A A ++ G+++H ++
Sbjct: 216 EAFRLFILMRE-----EFY------DCGPRT--FATMIRASAGLEIIFPGRQLHSCAIK- 261
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GLG FV +LIDMY +CG+++
Sbjct: 262 ---------------AGLGQDIFVSCALIDMYSKCGSLE 285
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 247/592 (41%), Gaps = 197/592 (33%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------------YKACS 106
L +F++MP RNV SWTSM+G + G EE + LF ++ GV AC+
Sbjct: 139 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 198
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------ 160
G ++ ++ + + +A + ++ + C +ME + F K N
Sbjct: 199 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 258
Query: 161 ------------------------------------------LSLLKHGKEIHPHHLKKD 178
L L G+EIH +K
Sbjct: 259 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 318
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
LE+D+ V NSL+ Y +C L F +I +K++VSWN+++ G A
Sbjct: 319 -LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCA------------ 365
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q+G G AL FF++M+++ ++P+ I+ +G+L+AC+
Sbjct: 366 QHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS------------------------- 400
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+S + GRC F+ + + E ++ Y CMV
Sbjct: 401 ------------------HSGMSQKGRC----------LFKYFSENKSAEVKLDHYACMV 432
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSS- 407
D+L R+G+ ++ ++ MP + +S C ++AE AA+ + +LEP S
Sbjct: 433 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 492
Query: 408 ------------------------------------------GKVHSFIAGDTSHSLVHK 425
G + F++GD SH +
Sbjct: 493 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 552
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I +KL L ++K++GY+ K + HSE+LA+ FGLIST GS +
Sbjct: 553 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 612
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+CGDCHS K ++K + R+II+ D+ RFHHF+DG CSCGDYW
Sbjct: 613 VMKNLRVCGDCHSAIKLIAKIVR----RKIIVRDSTRFHHFMDGRCSCGDYW 660
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
E ++ ++++ + + ++VA F K+ + + +WN+M+ GY G E+
Sbjct: 85 ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQE 144
Query: 234 ------------ITGFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFK 279
I G Q+G E AL F +M+ +++P + + V+ ACA
Sbjct: 145 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 204
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYG 324
G +IH +V + + ALI+ L +W +L+ YG
Sbjct: 205 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 264
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 163/634 (25%), Positives = 252/634 (39%), Gaps = 187/634 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDEG----VYKACSELKD 110
+F+K ++V +W SM+ Y G E + +FY + + E V K C+ LK+
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
R + ++ ++ F + ++ ++ + KC M
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 147 ----------------EMASGEFEEKDFSNLSLLKHGKEIHPH----HLKKDDLESDLLV 186
EM +F+ +L I P + K + E V
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 430
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D Y K ++ A FS I K +V+W+AMLAGYA Q G+ E A
Sbjct: 431 GTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA------------QTGETEAA 478
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALIS 305
++ F + + ++PN + S +L CA GK+ HG+ ++ + S V AL++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 306 IQG----LGTGSFV-----------WNSLIDMYGRCGAIQK------------------- 331
+ + + V WNS+I Y + G K
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG +YF++M ++ + P E CMVDL +RAGQ + + ++ M
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
Query: 378 PFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG------------------- 408
P S C ++ AA + ++P S
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERA 718
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K +SF+AGD SH L +I KL L + +K +GY
Sbjct: 719 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSE+LA+AFGLI+T GSPL +IKNLR+CGDCH K ++
Sbjct: 779 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIA 838
Query: 491 KAEKREREREIIMIDNYRFHHF-VDGACSCGDYW 523
K E EREI++ D+ RFHHF DG CSCGD+W
Sbjct: 839 KIE----EREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 56/244 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ERNV +WT+++ Y +E++ LF + +EG
Sbjct: 150 VFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPN---------------- 193
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
S F A G E+ L H + K+ L
Sbjct: 194 --SFTFAA--------------------ALGVLAEEGVGGRGLQVHTVVV------KNGL 225
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ + V+NSL++ Y KC ++ A F K + K +V+WN+M++GYA G E
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE------- 278
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F M ++ + S + V+ CA +K + +++H V+++ +
Sbjct: 279 -----ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 301 IALI 304
AL+
Sbjct: 334 TALM 337
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H +K L+ D+ V SL+D Y K K F ++K++++V+W +++GYA
Sbjct: 112 GRQLHCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+E+ L F RM QPN+ + + L A+ G ++H
Sbjct: 171 RNSMNDEV------------LTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
V+++ GL V NSLI++Y +CG ++K
Sbjct: 219 VVVKN----------------GLDKTIPVSNSLINLYLKCGNVRK 247
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 164/639 (25%), Positives = 261/639 (40%), Gaps = 198/639 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F+ +P + W +++ + E V F ++ +G V A +E+
Sbjct: 171 VFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVA 226
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKH 166
D +G+ V+ + + V ++ ++ KCG +E A F E+ D + L
Sbjct: 227 DVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALIS 286
Query: 167 GKEIHPHHLKKDDLESDLLV-----NNSLM------------DFYAKCRY---------- 199
G ++ +L ++L+ N+S + D A+C +
Sbjct: 287 GYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTA 346
Query: 200 -------LKVAHCK----------FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ HC+ F + +K + SWNAM++GYA Q G
Sbjct: 347 NSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYA------------QNGL 394
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A+ F +M++ +++PN I++S L+ACAQ+ LGK +H + ++ + V A
Sbjct: 395 TEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTA 454
Query: 303 LISIQG-LGTGS--------------FVWNSLIDMYGRCGAIQK---------------- 331
LI + G+ S WN++I YG G +
Sbjct: 455 LIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPT 514
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EGW+ F M +Y + P +E CMVDLL RAGQ + +
Sbjct: 515 SATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELI 574
Query: 375 KKMPFEPSSAEP---------C----NPDIAEHAARHLFELEPLSSG------------- 408
+ P S+ P C + D+A+ A++ LFEL+P +SG
Sbjct: 575 SEFP--KSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKK 632
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F+AGD +H I L +L +++
Sbjct: 633 QYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMI 692
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+ GY A HSEKLA+AFGL+ST PG+ +R+IKNLR+C DCH+
Sbjct: 693 EAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHN 752
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK +R I++ D RFHHF DG CSCGDYW
Sbjct: 753 ATKFISKVT----QRLIVVRDASRFHHFRDGVCSCGDYW 787
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 40/196 (20%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D V ++L Y + A F + V WN +LAG +
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS---------------- 191
Query: 243 GETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G A+E F+RM+ ++P+ +L+ VL A A+V +G+ +H + +
Sbjct: 192 GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEK----------- 240
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
GL V LI +Y +CG ++ F+MM+K P + Y ++
Sbjct: 241 -----CGLAEHEHVLTGLISLYSKCGDVESARC--LFDMMEK-----PDLVAYNALISGY 288
Query: 362 ARAGQFDDTLNFMKKM 377
+ G ++N ++
Sbjct: 289 SVNGMVGSSVNLFTEL 304
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 179/650 (27%), Positives = 266/650 (40%), Gaps = 197/650 (30%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM----- 61
LL+ M+ + P+ T++ AL + C + ELG Q+H+ LI + +FLG+
Sbjct: 199 LLREMNKSGMCPNMFTLSSAL--KACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDM 256
Query: 62 -------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL 108
F+ MPER++ +W +++ ++ EE +LF L+ EG
Sbjct: 257 YSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG-------- 308
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
I F N VL K + L +
Sbjct: 309 ---------------IGF--NQTTLSTVL------------------KSIAALQANYMCR 333
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+IH LK E D V NSL+D Y KC +++ A F + LV + +++ YA
Sbjct: 334 QIHALSLKSG-FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYA-- 390
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G GE AL + M ++P++ S +L ACA + ++ GK++H ++
Sbjct: 391 ----------QDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHI 440
Query: 289 LRHHIQLSTGVGIALI-------SIQGLG--------TGSFVWNSLIDMYGRCG----AI 329
L+ G +L+ SI+ G W+++I + G A+
Sbjct: 441 LKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEAL 500
Query: 330 Q-----------------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
Q E YF MK + +EP E Y CM+DL
Sbjct: 501 QLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDL 560
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-- 408
L RAG+ + + + KMPF+ ++ N D+ E AA L LEP SG
Sbjct: 561 LGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTH 620
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
KV++FI GD SHS +I
Sbjct: 621 VLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIY 680
Query: 428 EKLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVI 473
KL L +KK GY+ + HSEKLA+AFGLI+T PG+P+RV
Sbjct: 681 AKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVK 740
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ K++SK REII+ D RFHHF +G+CSCG+YW
Sbjct: 741 KNLRICFDCHTVLKFISKI----VSREIIVRDTNRFHHFREGSCSCGEYW 786
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 120/289 (41%), Gaps = 79/289 (27%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE----- 155
V KAC+ KD +GK V+ ++ F+ + V ++ ++ KCG A F+
Sbjct: 16 VLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRS 75
Query: 156 ----------------------------------KDFSNLSLLK---------HGKEIHP 172
+FS S++ G++IH
Sbjct: 76 VVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHG 135
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ L K +SD N+L+D YAK L+ A F +I + +VSWNA++AG L +
Sbjct: 136 Y-LIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHH 194
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
ALE M ++ M PN +LS L ACA + +LG+++H +++
Sbjct: 195 R------------ALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK-- 240
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+G+ SF+ LIDMY +C ++ ++ F++M
Sbjct: 241 --------------MDMGSDSFLGVGLIDMYSKCNSM--DDARLVFKLM 273
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 16/68 (23%)
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
N + VL AC K LGK++HG V+ + G + FV NSL+
Sbjct: 9 NEFAFPSVLKACTVTKDLVLGKQVHGIVV----------------VTGFDSDEFVANSLV 52
Query: 321 DMYGRCGA 328
+Y +CG
Sbjct: 53 ILYAKCGG 60
>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g52630
gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
Length = 588
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 215/478 (44%), Gaps = 133/478 (27%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
LS G+ +H +K ++D+ V +SL+D YAKC + A F ++ Q+++V+W+
Sbjct: 129 LSRCDIGRSVHCLSMKTG-YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSG 187
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ GYA Q G+ E AL F + ++ N S S V++ CA +L
Sbjct: 188 MMYGYA------------QMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLEL 235
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGR 325
G++IHG ++ S+ VG +L+S+ G+ G++ +WN+++ Y +
Sbjct: 236 GRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQ 295
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
QK +EG YF+ MK E +EP +
Sbjct: 296 HSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMK-ESRIEPTDK 354
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y +VD+L RAG+ + L + MP +P+ + C N ++A AA +FEL
Sbjct: 355 HYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFEL 414
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
P+SSG KVH+F AG+
Sbjct: 415 GPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERR 474
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H +I EKL L E++K GY+ K HSE+LA+AFGLI+
Sbjct: 475 HEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFP 534
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV+KNLR+CGDCH+ K++S + R II+ DN RFH F DG CSC DYW
Sbjct: 535 ADRPIRVMKNLRVCGDCHNAIKFMSVCTR----RVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
LV N+L++FY+K + + F QK +W+++++ +A + E+ +
Sbjct: 51 LVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA----QNELPWMS------ 100
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
LEF +M+ +++P+ L +CA + +G+ +H ++
Sbjct: 101 --LEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMK-------------- 144
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAI 329
G FV +SL+DMY +CG I
Sbjct: 145 --TGYDADVFVGSSLVDMYAKCGEI 167
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 154/592 (26%), Positives = 247/592 (41%), Gaps = 197/592 (33%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------------YKACS 106
L +F++MP RNV SWTSM+G + G EE + LF ++ GV AC+
Sbjct: 155 LRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACA 214
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------ 160
G ++ ++ + + +A + ++ + C +ME + F K N
Sbjct: 215 NASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTA 274
Query: 161 ------------------------------------------LSLLKHGKEIHPHHLKKD 178
L L G+EIH +K
Sbjct: 275 LVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLG 334
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
LE+D+ V NSL+ Y +C L F +I +K++VSWN+++ G A
Sbjct: 335 -LETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCA------------ 381
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q+G G AL FF++M+++ ++P+ I+ +G+L+AC+
Sbjct: 382 QHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACS------------------------- 416
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+S + GRC F+ + + E ++ Y CMV
Sbjct: 417 ------------------HSGMSQKGRC----------LFKYFSENKSAEVKLDHYACMV 448
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSS- 407
D+L R+G+ ++ ++ MP + +S C ++AE AA+ + +LEP S
Sbjct: 449 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 508
Query: 408 ------------------------------------------GKVHSFIAGDTSHSLVHK 425
G + F++GD SH +
Sbjct: 509 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 568
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I +KL L ++K++GY+ K + HSE+LA+ FGLIST GS +
Sbjct: 569 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 628
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+CGDCHS K ++K + R+II+ D+ RFHHF+DG CSCGDYW
Sbjct: 629 VMKNLRVCGDCHSAIKLIAKIVR----RKIIVRDSTRFHHFMDGRCSCGDYW 676
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
E ++ ++++ + + ++VA F K+ + + +WN+M+ GY G E+
Sbjct: 101 ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQE 160
Query: 234 ------------ITGFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFK 279
I G Q+G E AL F +M+ +++P + + V+ ACA
Sbjct: 161 MPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALY 220
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYG 324
G +IH +V + + ALI+ L +W +L+ YG
Sbjct: 221 QGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYG 280
>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
[Oryza sativa Japonica Group]
gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
Length = 836
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 178/704 (25%), Positives = 266/704 (37%), Gaps = 229/704 (32%)
Query: 24 TYALIFQRCPKLNNLELGIQVHA---------HLIVCG---------VELCAFLGMFEKM 65
T A + C + L G VHA H +V G ++ A + + M
Sbjct: 158 TCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM 217
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+V W +++ LG ++ + L + G V CS R
Sbjct: 218 GAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREAL 277
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V M+ +A +L K +N LL+HG EIH L
Sbjct: 278 GVVASMLKQGLRPDATTVSSLL------------------KSVANTGLLRHGMEIHCFFL 319
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA------------ 223
+ + LE D+ +L+D YAKC L A ++ ++L +WN+++A
Sbjct: 320 R-NQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIAL 378
Query: 224 -----------------------GYALGGFREE-----------------------ITGF 237
GY++ G + I+G
Sbjct: 379 ELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGS 438
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
G+ E + F M + +QP+ +++S +L ACA + K GKE+H + LR
Sbjct: 439 CHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDM 498
Query: 298 GVGIALI-----------------SIQ--------------------------------- 307
V ALI SIQ
Sbjct: 499 VVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNS 558
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GL S + +L+ G + EGW YF+ M+ +Y ++P E Y CMVDLLAR G
Sbjct: 559 GLKPDSITFTALLTACRSMGLV--TEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYL 616
Query: 368 DDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSGK-------- 409
D+ ++F+++ P +P ++ C N +AE AAR+LF LEP +S
Sbjct: 617 DEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMNLY 676
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
+H F H +I E+L+RL
Sbjct: 677 EYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLV 736
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLI-STSPGSPLRVIKNLRMC 479
+IKK GY+ K GH+EKLA+ +GLI S + +P+RV+KN RMC
Sbjct: 737 FQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMC 796
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K++S +R+II+ D RFHHFVDG CSC DYW
Sbjct: 797 NDCHEVAKHISSL----CDRQIILRDAVRFHHFVDGKCSCNDYW 836
>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 771
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 165/621 (26%), Positives = 247/621 (39%), Gaps = 194/621 (31%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY---- 80
+ALI + C LN+ + + CG L A +F++MP RN+ SW SM+ +
Sbjct: 223 HALIHKHC-FLNDPFVATALLDMYAKCGSMLLA-ENVFDEMPHRNLVSWNSMIVGFVKNK 280
Query: 81 ---NVLGYYEEIVNLFYLLID-EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPV 136
+G + E+++L + V AC+ L + GK V+ ++ G VK +
Sbjct: 281 LYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSL 340
Query: 137 LDMFIKCGRMEMASGEF-----------------------------------------EE 155
+DM+ KCG E A+ F +E
Sbjct: 341 VDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDE 400
Query: 156 KDFSNL-------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
+S+L + L G IH H LK +++ +++SL+ Y KC + A+ F
Sbjct: 401 ASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNS-RISSSLVTMYGKCGSMLDAYQVFR 459
Query: 209 KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
+ K+ ++V W AM IT F Q+G A++ F M+ + P I+ V
Sbjct: 460 ETKEHNVVCWTAM------------ITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSV 507
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
L+AC+ GK G+
Sbjct: 508 LSACSHT-----GKIDDGF----------------------------------------- 521
Query: 329 IQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS----- 383
+YF M +N++P +E Y CMVDLL R G+ ++ F++ MPFEP S
Sbjct: 522 -------KYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGA 574
Query: 384 -----AEPCNPDIAEHAARHLFELEPLSSG------------------------------ 408
+ N ++ A LF+LEP + G
Sbjct: 575 LLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGV 634
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG----- 450
+ F A D SHS +I L +L IK+ GY+
Sbjct: 635 RKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEG 694
Query: 451 --------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
HSEKLALAFGL+ PGSP+R+ KNLR CGDCH+ K+ S+ +REII
Sbjct: 695 SEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEI----FQREII 750
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFH F +G+CSC DYW
Sbjct: 751 VRDINRFHRFTNGSCSCMDYW 771
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 41/181 (22%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PDE +Y+ +F + L G +H+H++ CG L A+
Sbjct: 398 PDE--ASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAY 455
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSEL 108
+F + E NV WT+M+ +++ G E + LF +++EGV ACS
Sbjct: 456 -QVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHT 514
Query: 109 KDHRVGKDVYDYMISIK-----FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
G ++ M ++ E AC ++D+ + GR+E A E F SL
Sbjct: 515 GKIDDGFKYFNSMANVHNIKPGLEHYAC----MVDLLGRVGRLEEACRFIESMPFEPDSL 570
Query: 164 L 164
+
Sbjct: 571 V 571
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 175/694 (25%), Positives = 284/694 (40%), Gaps = 203/694 (29%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMP 66
Y I Q C + ++HAH++ G AFL +F+++P
Sbjct: 72 YVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELP 131
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKD 116
RNV SWT++M Y E V +F +++ G Y A S+L +GK
Sbjct: 132 RRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHSKELGKQ 191
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------------- 153
++ Y I + E +A + + ++ KCG +E A F
Sbjct: 192 IHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGE 251
Query: 154 ----------------EEKDF---SNLSL------LKHGKEIHPHHLKKDDLESDLLVNN 188
E +F S LSL L G +IH +K ES+L + N
Sbjct: 252 AATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLG-FESNLPIKN 310
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREEITGFTQYGDGETAL 247
S+M Y KC ++ A F +++ LV+WNAM+AG+A + F ++ + G AL
Sbjct: 311 SIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKD--DLAAHQCGTEAL 368
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F ++ ++ M+P+ + S VL+ C+ + + G+++H ++ VG AL+++
Sbjct: 369 SIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMY 428
Query: 308 G------LGTGSFV---------WNSLIDMYGRCGAIQK--------------------- 331
+ +FV W S+I Y + G Q+
Sbjct: 429 NKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFV 488
Query: 332 ------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
+E YF+MMK EY + P M+ Y C++D+ R G+ D+ +F+K+M
Sbjct: 489 GVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDL 548
Query: 380 EPSS------AEPCNP----DIAEHAARHLFELEP-------------LSSGK------- 409
EP+ C ++ +AA L L+P LS+GK
Sbjct: 549 EPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRV 608
Query: 410 -----------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY---- 442
++SF SH+ ++ E L L+ + K GY
Sbjct: 609 RKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHAQSGEMYELLGNLHEKAKSFGYEWEE 668
Query: 443 -------------MKRIPA-CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K + + HSEKLA+AFGL++TS P+RV K++ MC DCH+ +
Sbjct: 669 SLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRI 728
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
+S REII+ D+ R H F++G CSCGD+
Sbjct: 729 ISLLSA----REIIIRDSKRLHKFINGHCSCGDF 758
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 161/608 (26%), Positives = 256/608 (42%), Gaps = 172/608 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL---KDHRVGKDV 117
+F+ +PE++ SWT+MM Y + G + EL D +
Sbjct: 210 VFDDIPEKDERSWTTMMTGY----------------VKNGCFDLGKELLKGMDENMKLVA 253
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF-------SNLSLLKHGKEI 170
Y+ MIS N + + L+M RM + E +E + +N LL+ GK++
Sbjct: 254 YNAMISGYV--NCGLYQEALEMV---RRMVSSGIELDEFTYPSVIRACANARLLQLGKQV 308
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG- 229
H + L+++D +NSL+ Y KC A F K+ K LVSWNA+L+GY G
Sbjct: 309 HAYVLRREDFS--FHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGH 366
Query: 230 -------FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
F+E I+G + G GE L+ FS M + +P + SG + +
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-----------QGLGT----GSFVW 316
CA + + G++ H +++ S G ALI++ Q T S W
Sbjct: 427 CAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSW 486
Query: 317 NSLIDMYGRCG---------------------------------AIQKNEGWRYFEMMKK 343
N+LI G+ G A ++G +YF M+
Sbjct: 487 NALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMET 546
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
Y + P + Y ++DLL R+G+F + + ++ +PF+P++ C N ++
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGI 606
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
AA LF L P G +V
Sbjct: 607 IAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQV 666
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKL 455
H+F+ DTSH + + L L E++++GY+ K HSEK+
Sbjct: 667 HTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKI 726
Query: 456 ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
A+AFGL+ PG+ +R+ KNLR CGDCH+ +++SK +R+II+ D RFHHF +G
Sbjct: 727 AVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVV----QRDIILRDRKRFHHFRNG 782
Query: 516 ACSCGDYW 523
CSCG++W
Sbjct: 783 ECSCGNFW 790
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 186 VNNSLMDFYAKC----RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------ 229
V+N+L+ Y++C L A F I +K SW M+ GY G
Sbjct: 186 VSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM 245
Query: 230 --------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+ I+G+ G + ALE RM+ + ++ + + V+ ACA + +LG
Sbjct: 246 DENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLG 305
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW-NSLIDMYGRCGAIQKNEGWRYFEM 340
K++H YVLR SF + NSL+ +Y +CG NE FE
Sbjct: 306 KQVHAYVLRRE------------------DFSFHFDNSLVTLYYKCGKF--NEARAIFEK 345
Query: 341 M 341
M
Sbjct: 346 M 346
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 38/163 (23%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N L+D Y K L A F +I + ++ M++GY G
Sbjct: 53 NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRD 112
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA-QVKGFKLGKEIH 285
+ ITGF+ DG +A+ F +M +P+ + + VLA A V K + H
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFH 172
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
L+ G G + V N+L+ +Y RC +
Sbjct: 173 AAALK----------------SGAGYVTSVSNALVSVYSRCAS 199
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 160/632 (25%), Positives = 263/632 (41%), Gaps = 186/632 (29%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------MFEKMPERNVFSWTSM 76
LIF + P+ N IV + LG +F +M E+++ SW+++
Sbjct: 228 LIFDQMPQRN------------IVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSAL 275
Query: 77 MGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRVGKDVYDYMISIKF 126
+ Y G YEE + +F + +DE V AC+ L + GK ++ +I +
Sbjct: 276 ISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGI 335
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
E ++ ++ M+ G + A F H+L D +
Sbjct: 336 ESYVNLQNALIHMYSGSGEIMDAQKLFNGS----------------HNL-------DQIS 372
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
NS++ KC ++ A F + +K +VSW+A+++GYA Q+
Sbjct: 373 WNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYA------------QHDCFSET 420
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L F M ++P+ L V++AC + GK +H Y+ ++ ++++ +G L+ +
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDM 480
Query: 307 --------------QGLG-TGSFVWNSLI-------------DMY--------------- 323
G+ G WN+LI DM+
Sbjct: 481 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 540
Query: 324 -GRCGAIQK----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
G GA + +EG +F M +++ +EP ++ Y CMVDLL RAG ++ ++ MP
Sbjct: 541 MGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP 600
Query: 379 FEPSSAE------PC----NPDIAEHAARHLFELEP------------------------ 404
P A C + ++ E R L EL+P
Sbjct: 601 MAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLE 660
Query: 405 -------------------LSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
++G VH F+AGD +H ++K+ L + +K GY
Sbjct: 661 VRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPD 720
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEKLA+AFGL++ SP +P+R++KNLR+C DCH+ K +SK
Sbjct: 721 TNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISK 780
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
A REI++ D +RFH+F +GACSC DYW
Sbjct: 781 A----YAREIVVRDRHRFHYFKEGACSCMDYW 808
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 173/394 (43%), Gaps = 64/394 (16%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSEL 108
L +F+++ N F W +MM Y E+ + L+ L++ V +AC+
Sbjct: 95 LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 154
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD-FSNLSLLKHG 167
GK+++D+++ + F+ + V+ +++M+ CG M A F+E ++S
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW---- 210
Query: 168 KEIHPHHLKKDDLES-----------DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
I ++KK D+E +++ +NS++ K + A F+++ +K +V
Sbjct: 211 NSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMV 270
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SW+A+++GY G EE AL F M M+ + + + VL+ACA +
Sbjct: 271 SWSALISGYEQNGMYEE------------ALVMFIEMNANGMRLDEVVVVSVLSACAHLS 318
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI----------QGLGTGS-----FVWNSLID 321
K GK IHG V+R I+ + ALI + Q L GS WNS+I
Sbjct: 319 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMIS 378
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+CG+++K F++M E + + ++ A+ F +TL +M
Sbjct: 379 GCMKCGSVEKARA--LFDVMP-----EKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQ 431
Query: 382 SSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFI 414
+ A HL L+ GK VH++I
Sbjct: 432 IRPDETILVSVISACTHLAALD---QGKWVHAYI 462
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 191 bits (486), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 154/622 (24%), Positives = 261/622 (41%), Gaps = 192/622 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL-------------- 59
PD C+VT AL Q +L +LG ++H +++ V +C L
Sbjct: 16 PDSCSVTSAL--QAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDCLEKAQ 73
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------------------ 101
+ + +NV +W S++ Y+ G + E V L +++EG+
Sbjct: 74 AVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQG 133
Query: 102 -----YKACSELKDHRVGKDVYDYMISIKFEGNACVKR-PVLDMFIKCGRMEMASGEFEE 155
+ +K + +V + I + C + +D +M+ + +
Sbjct: 134 RIDEALTIINRIKSSGITPNVVSWTALI----SGCSQNEKYMDALKIFSQMQAENVKPNS 189
Query: 156 KDFSNL-------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
+L SLLK G+E+H +K ++ D+ V +L+D Y++ LKVA+ F+
Sbjct: 190 TTICSLLCACAGPSLLKKGEELHCFSMKLGFVD-DIYVATALIDMYSEAGKLKVAYNVFN 248
Query: 209 KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
KI++K L WN M+ GYA+ + GE + + +M + ++P+ I+ + +
Sbjct: 249 KIQEKTLPCWNCMMMGYAI------------HSHGEEVMILYDKMRERHIRPDAITFTAL 296
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
L+AC + L+D
Sbjct: 297 LSACKN------------------------------------------SGLVD------- 307
Query: 329 IQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EGW+YF+ M+++YN+ P +E YCCMVDLL ++G D+ +F++ MP +P ++
Sbjct: 308 ----EGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGA 363
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSGK----------------------------- 409
C N +AE AAR LF++EP +S
Sbjct: 364 LLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVLAM 423
Query: 410 --------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------ 449
+H F H +I +L +L SEI+K+GY +
Sbjct: 424 KIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNIDD 483
Query: 450 --------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
H+EKLA+ +G++ GSP+R++KN R+C DCH+ KY+S R+REI
Sbjct: 484 NEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLV----RKREI 539
Query: 502 IMIDNYRFHHFVDGACSCGDYW 523
++ D RFHHF +G C+C D W
Sbjct: 540 LLRDGGRFHHFKNGKCACNDRW 561
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
L F + +P++ S++ L A ++ FKLGKEIHGY++R ++ V +L+
Sbjct: 2 VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61
Query: 306 I---------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
+ + WNSLI Y G Q E + M +E + P
Sbjct: 62 MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKG--QFGEAVKLLNQMVEE-GITPD 118
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + +V + G+ D+ L + ++
Sbjct: 119 LVTWNGLVSGYSMQGRIDEALTIINRI 145
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 166/588 (28%), Positives = 247/588 (42%), Gaps = 176/588 (29%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114
L A +F++ P +N+F W +M+ + + EE + L D G V
Sbjct: 300 LPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTC---LADMGRLG---------VP 347
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
D Y Y +K AC+ S+L +E+H H
Sbjct: 348 VDSYSYAHGLK----ACIA----------------------ASASHLPASARVREMHAHA 381
Query: 175 LKKD-DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+++ L + V +L+D YAK + A F+ + ++LVSW+AM+ YA + E
Sbjct: 382 IRRGYGLHTH--VATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYA----KNE 435
Query: 234 ITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
G A++ F M+ +D + PN+I++ VL ACA V GK +H Y+LR
Sbjct: 436 RPG--------DAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRR 487
Query: 292 HIQLSTGVGIALISIQ----GLGTGSFV------------WNSLIDMYGRCG-------- 327
L V AL+++ L TG ++ WNSLI YG G
Sbjct: 488 GFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQV 547
Query: 328 -------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
I N +G + FE M EYN+ P E Y CMVDLL
Sbjct: 548 FEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLG 606
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG+ D+ + ++ M +PS C + + AE A HLF+LEP ++G
Sbjct: 607 RAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVL 666
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
K++SF++ D + V ++
Sbjct: 667 LADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQAL 726
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
+ +++K GY+ + GHSEKLA+AFGLI T G +R+ KN
Sbjct: 727 IGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKN 786
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCHS TK++SK +REI++ D RFHHF +G CSC DYW
Sbjct: 787 LRLCEDCHSVTKFISKFT----DREIVVRDVNRFHHFRNGVCSCRDYW 830
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 37/161 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----AFLGMFEKM----------- 65
++T + C +N L G +HA+++ G +L A + M+ K
Sbjct: 458 SITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFN 517
Query: 66 ---PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHR 112
RNV SW S++ Y + G+ E + +F +I+EG V ACS +
Sbjct: 518 WIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVE 577
Query: 113 VGKDVY----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
GK ++ +Y ++ + E AC ++D+ + GR++ A
Sbjct: 578 QGKKLFESMVEYNVTPRAEHYAC----MVDLLGRAGRLDEA 614
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 40/203 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
SD ++ L++ YA L A F + K++ WNAML AL
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALA----------- 328
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG-----KEIHGYVLRHHIQ 294
GE AL + M + + ++ S + L AC L +E+H + +R
Sbjct: 329 -DHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIR---- 383
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
+G G + V +LID Y + G + E R F M + +
Sbjct: 384 ------------RGYGLHTHVATTLIDCYAKLGIVSYAE--RVFTSMPDRN-----LVSW 424
Query: 355 CCMVDLLARAGQFDDTLNFMKKM 377
M+ A+ + D + ++M
Sbjct: 425 SAMIGCYAKNERPGDAIQIFQEM 447
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 138/482 (28%), Positives = 218/482 (45%), Gaps = 134/482 (27%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F+++ ++++ +H +K E+ LVNN+L+D YAK L A FSK+ K +VS
Sbjct: 51 FASMKVMQNAISVHCLIIKTG-FEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVS 109
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W +++ GY+ G EE A++ F +M + + P+ I+++ VL+ACA++
Sbjct: 110 WTSLVTGYSHNGSYEE------------AIKLFCKMRISGVYPDQIAVASVLSACAELTV 157
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV----------------WNSLID 321
G++IH +++ ++ S V +L+++ GS V W +LI
Sbjct: 158 MDFGQQIHATLVKSGLESSLSVDNSLVTMYA-KCGSIVDANRAFDNMPTRDVISWTALIV 216
Query: 322 MYGRCG-----------------------------AIQKN----EGWRYFEMMKKEYNME 348
Y + G A N G YFE M K Y ++
Sbjct: 217 GYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIK 276
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARH 398
P E Y CM+DLL R+G+ + + +M P + C ++ E AA++
Sbjct: 277 PGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKN 336
Query: 399 LFELEPLSS-------------------------------------------GKVHSFIA 415
LFELEP++S KV +F++
Sbjct: 337 LFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMS 396
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGL 461
D +H L ++I K+ + IK+ GY+ K + HSEKLA+AFGL
Sbjct: 397 EDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGL 456
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
++ G+P+R+ KNLR+CGDCH+ KY SK R II+ D+ FHHF +G CSCGD
Sbjct: 457 LTVPQGAPIRIFKNLRVCGDCHTAMKYTSKV----YARHIILRDSNCFHHFTEGRCSCGD 512
Query: 522 YW 523
YW
Sbjct: 513 YW 514
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KAC 105
CA + +F KM +++V SWTS++ Y+ G YEE + LF + GVY AC
Sbjct: 94 CAIM-VFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSAC 152
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
+EL G+ ++ ++ E + V ++ M+ KCG + A+ F+
Sbjct: 153 AELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFD 201
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 28/115 (24%)
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN+++ G GF E+ AL FF +M DM+ + +L VL + A +
Sbjct: 7 VSWNSLILGCVREGFEED------------ALSFFQKMRSRDMKIDEYTLPSVLNSFASM 54
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
K + +H +++ G V N+LIDMY + G +
Sbjct: 55 KVMQNAISVHCLIIK----------------TGFEAYKLVNNALIDMYAKQGKLD 93
>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 842
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 178/704 (25%), Positives = 266/704 (37%), Gaps = 229/704 (32%)
Query: 24 TYALIFQRCPKLNNLELGIQVHA---------HLIVCG---------VELCAFLGMFEKM 65
T A + C + L G VHA H +V G ++ A + + M
Sbjct: 158 TCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM 217
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+V W +++ LG ++ + L + G V CS R
Sbjct: 218 GAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREAL 277
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V M+ +A +L K +N LL+HG EIH L
Sbjct: 278 GVVASMLKQGLRPDATTVSSLL------------------KSVANTGLLRHGMEIHCFFL 319
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA------------ 223
+ + LE D+ +L+D YAKC L A ++ ++L +WN+++A
Sbjct: 320 R-NQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIAL 378
Query: 224 -----------------------GYALGGFREE-----------------------ITGF 237
GY++ G + I+G
Sbjct: 379 ELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLISGS 438
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
G+ E + F M + +QP+ +++S +L ACA + K GKE+H + LR
Sbjct: 439 CHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDM 498
Query: 298 GVGIALI-----------------SIQ--------------------------------- 307
V ALI SIQ
Sbjct: 499 VVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMWNS 558
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GL S + +L+ G + EGW YF+ M+ +Y ++P E Y CMVDLLAR G
Sbjct: 559 GLKPDSITFTALLTACRSMGLV--TEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYL 616
Query: 368 DDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSGK-------- 409
D+ ++F+++ P +P ++ C N +AE AAR+LF LEP +S
Sbjct: 617 DEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMNLY 676
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
+H F H +I E+L+RL
Sbjct: 677 EYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLV 736
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLI-STSPGSPLRVIKNLRMC 479
+IKK GY+ K GH+EKLA+ +GLI S + +P+RV+KN RMC
Sbjct: 737 FQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMC 796
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K++S +R+II+ D RFHHFVDG CSC DYW
Sbjct: 797 NDCHEVAKHISSL----CDRQIILRDAVRFHHFVDGKCSCNDYW 836
>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
Length = 1083
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 178/696 (25%), Positives = 273/696 (39%), Gaps = 219/696 (31%)
Query: 41 GIQVHAHLIVCGV--------ELCAFLG----------MFEKMPERNVFSWTSMMGMYNV 82
G QVH ++ G+ L F G +FE+MP+ NV SWTS+M Y+
Sbjct: 394 GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD 453
Query: 83 LGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACV 132
G E++N++ + EGV +C L+D +G V ++I FE + V
Sbjct: 454 SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 513
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNL------------------SL----------- 163
++ MF +E A F+ + ++ SL
Sbjct: 514 ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 573
Query: 164 -------------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204
LK G+ IH +K L+S++ + N+L+ Y++ + A
Sbjct: 574 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAE 632
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGG----------------------FREEITGFTQYGD 242
F + ++ L+SWN+M+A Y G + I G + +
Sbjct: 633 LVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEE 692
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A++ + + + + N I++ LAA A + + G+++HG V++ + V A
Sbjct: 693 PNEAVKAYKLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA 751
Query: 303 LISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK---------------- 331
+ + G + WN LI + R G QK
Sbjct: 752 AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 811
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+EG Y++ M +E+ + P +E C++DLL R+G+ F+
Sbjct: 812 HVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFI 871
Query: 375 KKMPFEP------SSAEPC----NPDIAEHAARHLFELEP-------------LSSGK-- 409
K+MP P S C N ++A A HL EL+P +SGK
Sbjct: 872 KEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWE 931
Query: 410 ----------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
VHSF G+ H +IS KL L K+ G
Sbjct: 932 DVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAG 991
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K HSE+LALAFGLI+T S LR+ KNLR+CGDCHS K
Sbjct: 992 YVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYK 1051
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+VS R+I++ D YRFHHF G CSCGDYW
Sbjct: 1052 FVSGIVG----RKIVLRDPYRFHHFSGGKCSCGDYW 1083
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 49/285 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F M ER+V SW +M+G Y V G+ ++ +F ++ G+ C L
Sbjct: 149 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGS---------- 198
Query: 121 MISIKFEGNACVKRPVLDMFIK---CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
++ EG + + I G ++ +G N SL + K++ LKK
Sbjct: 199 VLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSL-RSAKDLRKGMLKK 257
Query: 178 DDLESDLLVN-----------NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
D S L+ N+L+D YAK ++ A F ++++K+++SW ++++GYA
Sbjct: 258 DLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYA 317
Query: 227 LGGF---------------REE------ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
G+ R E ++G+ + G E A+ F +M ++PN +
Sbjct: 318 KHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMV 377
Query: 266 SGVLAACAQVKGFKL--GKEIHGYVLRHHIQLSTGVGIALISIQG 308
+ ++ AC++ G+ G ++HG+V++ I VG AL+ G
Sbjct: 378 ASLITACSR-SGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYG 421
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 130/294 (44%), Gaps = 45/294 (15%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD 157
+ + C + K + G ++ ++I+ F + + ++ ++K G + A F+ E+
Sbjct: 36 ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS 95
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLL-----VNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
+ + + G + K L SD+ N++L+DF++KC ++ A F + +
Sbjct: 96 VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMME 155
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ +VSWNAM+ GYA+ GF ++ + F M++ + P+ +L VL A
Sbjct: 156 RDVVSWNAMIGGYAVQGFADD------------SFCMFRSMLRGGLVPDCYTLGSVLRAS 203
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
A+ G + +IHG +I+ G G+ V LI+ Y + G+++
Sbjct: 204 AEGGGLIIANQIHG----------------IITQLGYGSYDIVTGLLINAYAKNGSLRSA 247
Query: 333 EGWRYFEMMKKEYNMEPAMEQYC---------CMVDLLARAGQFDDTLNFMKKM 377
+ R + K ++ + Y ++D+ A++G+ +D +M
Sbjct: 248 KDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEM 301
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 121/301 (40%), Gaps = 72/301 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M RN SW++M+ Y +G YEE V LF + GV
Sbjct: 330 VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGV------------------- 370
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
E N + V + C R SG ++ F ++H +K L
Sbjct: 371 ------EPNGFM---VASLITACSR----SGYMADEGF----------QVHGFVVKTGIL 407
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D+ V +L+ FY + A F ++ ++VSW +++ GY+ G E+
Sbjct: 408 -GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEV------ 460
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L + RM Q + N + + V ++C ++ LG ++ G+++++ + S V
Sbjct: 461 ------LNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVA 514
Query: 301 IALISI----QGLGTGSFV-----------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
+LIS+ + +V WN++I Y G + E R F M+ +
Sbjct: 515 NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCR--ESLRCFHWMRHLH 572
Query: 346 N 346
N
Sbjct: 573 N 573
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 139/478 (29%), Positives = 209/478 (43%), Gaps = 137/478 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
++ G+ IH ++ S + V NSL+ YA C + A+ F K+ +K LV+WN++
Sbjct: 4 VRLGETIHSVVIR-SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV-- 60
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
I GF + G E AL ++ M ++P+ ++ +L+ACA++ LGK
Sbjct: 61 ----------INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKR 110
Query: 284 IHGYVLRHHIQL---STGVGIALISIQG------------LGTGSFVWNSLI-----DMY 323
+H Y+++ + S+ V + L + G + S W SLI + +
Sbjct: 111 VHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGF 170
Query: 324 GR-------------------------------CGAIQKNEGWRYFEMMKKEYNMEPAME 352
G+ CG ++ EG+ YF M++EY +EP +E
Sbjct: 171 GKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVK--EGFEYFRRMREEYKIEPRIE 228
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
+ CMVDLLARAGQ ++K MP +P+ C + D+AE A + +L
Sbjct: 229 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL 288
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
EP SG +VH F+ GD S
Sbjct: 289 EPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKS 348
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGHSEKLALAFGLISTS 465
H I KL + ++ GY+ +I HSEK+A+AF LIST
Sbjct: 349 HPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTP 408
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SP+ V+KNLR+C DCH K VSK REI++ D RFHHF +G+CSC DYW
Sbjct: 409 ERSPITVVKNLRVCADCHLAIKLVSKV----YNREIVVRDRSRFHHFKNGSCSCQDYW 462
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
CG ++ + +F+KMPE+++ +W S++ + G EE + L+ + +G+
Sbjct: 36 CG-DVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS 94
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
AC+++ +GK V+ YMI + N +LD++ +CGR+E A F+E
Sbjct: 95 LLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDE 149
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 21/103 (20%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-----------ELCAFLG------ 60
PD T+ L C K+ L LG +VH ++I G+ +L A G
Sbjct: 87 PDGFTIVSLL--SACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAK 144
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF-YLLIDEGV 101
+F++M ++N SWTS++ V G+ +E + LF Y+ EG+
Sbjct: 145 TLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGL 187
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 175/658 (26%), Positives = 266/658 (40%), Gaps = 208/658 (31%)
Query: 24 TYALIFQRCPK-----------LNNLELGIQVHAHLIVCGVELCAFLG-------MFEKM 65
T+ +F+ C K + L+L + +H H+ + + + +G +F+K
Sbjct: 129 TFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKS 188
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R+ S+T+++ Y G+ ++ LF D KDV +
Sbjct: 189 TLRDAVSFTALITGYVSEGHVDDARRLF----------------DEIPAKDVVSW----- 227
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFS--------------NLSLLKHGK 168
NA + +++ GR E A F +E D S +L L+ GK
Sbjct: 228 ---NAMIAG-----YVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGK 279
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
I ++ +L + N+L+D Y+KC + A F ++ K ++ WN M+ GY
Sbjct: 280 WIGSW-VRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHL 338
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
EE AL F M++ ++ PN ++ VL ACA + LGK +H Y+
Sbjct: 339 SLYEE------------ALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYI 386
Query: 289 LRH--------HIQLSTG----------VGIALISIQGLGTGSFV-WNSLIDMYGRCGAI 329
++ ++ L T V +A + +G+ S WN++I G
Sbjct: 387 DKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHA 446
Query: 330 QK---------NEGW------------------------RYFEMMKKEYNMEPAMEQYCC 356
++ NEG+ RYF M K+Y + P ++ Y C
Sbjct: 447 ERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGC 506
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS 406
M+DLLAR+G+FD+ M M EP A C + E+ A LFELEP +
Sbjct: 507 MIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPEN 566
Query: 407 SGK-------------------------------------------VHSFIAGDTSHSLV 423
SG VH F+ GD
Sbjct: 567 SGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDK----F 622
Query: 424 HKISEKLMRLYSEIKKI----GYM--------------KRIPACGHSEKLALAFGLISTS 465
H SE + R+ E+ ++ G++ K HSEKLA+AFGLIST
Sbjct: 623 HPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTK 682
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PGS +R++KNLR+C +CHS TK +SK REII D RFHHF DG CSC D W
Sbjct: 683 PGSTIRIVKNLRVCRNCHSATKLISKI----FNREIIARDRNRFHHFKDGFCSCNDRW 736
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 137/334 (41%), Gaps = 86/334 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF---------LGMFEKMPE 67
+ +CP + +L+ Q+H+ +I G +E CA L +F +
Sbjct: 31 LLAKCPDIPSLK---QIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHH 87
Query: 68 R--NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGK 115
+ N+F W +++ +++ ++LF ++ G+Y K+C++ K K
Sbjct: 88 QPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAK 147
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++ + + + + V ++ M+ + G + A F++
Sbjct: 148 QLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLR---------------- 191
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
D + +L+ Y ++ A F +I K +VSWNAM+AGY
Sbjct: 192 -------DAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGY---------- 234
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Q G E AL F+RM + D+ PN ++ VL+AC ++ +LGK I +V
Sbjct: 235 --VQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRD----- 287
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+G G + N+L+DMY +CG I
Sbjct: 288 -----------RGFGKNLQLVNALVDMYSKCGEI 310
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 45/181 (24%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL------------------- 48
+L + M N VT+ + C L L+LG VHA++
Sbjct: 346 VLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSI 405
Query: 49 IV----CG-VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---- 99
IV CG VE+ +F M R++ SW +M+ + G+ E + LF +I+E
Sbjct: 406 IVMYAKCGCVEVAE--QVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQP 463
Query: 100 ------GVYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEM 148
GV AC++ +G + DY IS K + C ++D+ + G+ +
Sbjct: 464 DDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGC----MIDLLARSGKFDE 519
Query: 149 A 149
A
Sbjct: 520 A 520
>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial-like [Cucumis sativus]
Length = 712
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 240/587 (40%), Gaps = 194/587 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDH 111
+FEKMP RNV SWTS++G + G E + +F+ ++ AC+ +
Sbjct: 196 LFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANICTP 255
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN----------- 160
+G ++ ++ + N + ++ + C ++ AS F + N
Sbjct: 256 FIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGY 315
Query: 161 -------------------------------------LSLLKHGKEIHPHHLKKDDLESD 183
L + G+E+H K LESD
Sbjct: 316 GLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAV-AHKLGLESD 374
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V+NSL+ Y KC ++ F+++ +K++VSWN+++ G A Q+G G
Sbjct: 375 IFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCA------------QHGFG 422
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL F++MI+T + P+ I+L+G+L+AC
Sbjct: 423 RWALTLFAQMIRTRVDPDEITLAGLLSACGH----------------------------- 453
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
G+ T GRC +F+ K + +E E Y MVDLL R
Sbjct: 454 ---SGMLTK-----------GRC----------FFKHFGKNFGIEMTNEHYSSMVDLLGR 489
Query: 364 AGQFDDT----------LNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEP--------- 404
GQ ++ N+M + SS N +AE AA+ + +L+P
Sbjct: 490 YGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLL 549
Query: 405 ----LSSGKV------------------------------HSFIAGDTSHSLVHKISEKL 430
S+GK H+FI+GD SH L KI +KL
Sbjct: 550 SNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKL 609
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
L ++K++GY+ K HSE+LA+ FGLIST GS + V+KNL
Sbjct: 610 EWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNL 669
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH+ K SK REI++ D RFHHF +G CSCGDYW
Sbjct: 670 RICGDCHNAVKLTSKVVG----REIVVRDPSRFHHFHNGTCSCGDYW 712
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/342 (20%), Positives = 128/342 (37%), Gaps = 92/342 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F KM V +T M+G Y G E+ + LFY + +KD
Sbjct: 72 LFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEM----------PVKD---------- 111
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+IS C +KCG + MA F++ + + ++
Sbjct: 112 LISWNSMLKGC---------LKCGDLTMACNMFDK-------------------MSERNV 143
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
S + N L++F ++VA C F + K + +WN+M+ G+ G E+
Sbjct: 144 VSWTTIINGLLEF----GRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEK 199
Query: 234 ------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I G G AL F +M+ + + + +L+ L ACA + +G
Sbjct: 200 MPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLAS-FKATSSTLACALTACANICTPFIG 258
Query: 282 KEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYG-- 324
+IHG +++ + + +LIS + VW +L+ YG
Sbjct: 259 VQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLN 318
Query: 325 --RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
A+Q +G ++ + ++ A+ CC ++ + R
Sbjct: 319 CRHTDALQVFKGMMRMSVLPNQSSLTSALNS-CCGLEAVDRG 359
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 164/646 (25%), Positives = 252/646 (39%), Gaps = 193/646 (29%)
Query: 55 LCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF-------YLLIDEGVYKACSE 107
LC +F+ + +N+FSW ++ Y G+ ++LF + ACS
Sbjct: 92 LCEARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVPPTAMTFATALSACSS 151
Query: 108 LKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS---- 162
L D + G++++ + + + + + + M+ KCG + A F+ N+
Sbjct: 152 LGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNA 211
Query: 163 -LLKHGKEIHPHHLKKDDLES--------------------------------------- 182
+ + + H HH D E
Sbjct: 212 LIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQ 271
Query: 183 ----DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
D+ V N+L++ YAKC L+VA F K++++ VS N M+A +A
Sbjct: 272 FDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFA------------ 319
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL-----RHHI 293
Q G G+ +++ F M + + + + V+ AC+ + GK IH V+ R
Sbjct: 320 QQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCC 379
Query: 294 QLSTGVGIALISIQG-LGT--------------GSFVWNSLIDMYGR------------- 325
+ V AL+S+ G GT S WN+++
Sbjct: 380 LPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRA 439
Query: 326 --CGAIQKNEG------------------WRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
C ++ + + +F++M ++++ PA E Y CMVDLLAR+G
Sbjct: 440 AACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSG 499
Query: 366 QFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEP--------LSS 407
+ D M MPF P + + + A AA F LEP LSS
Sbjct: 500 RLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSS 559
Query: 408 ------------------------------------GKVHSFIAGDTSHSLVHKISEKLM 431
G+VH F+AGD+SH + KI +L
Sbjct: 560 LYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELD 619
Query: 432 RLYSEIKKIGYMKRIPACGH--------------SEKLALAFGLISTSPGSPLRVIKNLR 477
L E+K+ G++ H SEKLA+AFGLIST G PL V+KNLR
Sbjct: 620 ILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKNLR 679
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH K +SK R R I + D RFH F G CSCGDYW
Sbjct: 680 VCSDCHGAIKLISKL----RSRVITVRDANRFHRFQSGTCSCGDYW 721
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 40/210 (19%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
KD +++S++ H K + + L S +NN L+ AK L A F I+ K++
Sbjct: 55 KDSNSVSII-HQK------ITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNI 107
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
SWN +++ YA G TAL F++M D+ P ++ + L+AC+ +
Sbjct: 108 FSWNIIISAYA------------HRGHPSTALHLFAKM---DVPPTAMTFATALSACSSL 152
Query: 276 KGFKLGKEIHGYV-----LRHHIQLSTGVGIALISIQGLGTGSFV-----------WNSL 319
+ G+EIH + +R + L T + L T V WN+L
Sbjct: 153 GDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNAL 212
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
I Y + G ++ FE M E+ + P
Sbjct: 213 IAAYAQSGH-SHHQALDLFEKM-AEHGVRP 240
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 157/589 (26%), Positives = 246/589 (41%), Gaps = 171/589 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
F++MPER+V SW +M Y +E +NLF+ +++EG+ +CS + D
Sbjct: 215 FDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDP 274
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ + + N+ VK +LDM K G +E+A F+E
Sbjct: 275 TLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS------------- 321
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + + N ++ Y + L +A F + ++ +VSWN+M+AGYA
Sbjct: 322 ---------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA----- 367
Query: 232 EEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G+ ++E F MI D+QP+ ++++ VL+AC + KL + V
Sbjct: 368 -------QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420
Query: 291 HHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AIQK 331
+I+L +LI + Q +GT V +N+LI + G AI+
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
NEG F+ ++ P ++ Y CMVDLL
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLG 535
Query: 363 RAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLS------ 406
RAG+ D+ ++ MP +P +S + E AA LFELEP +
Sbjct: 536 RAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVL 595
Query: 407 -------------------------------------SGKVHSFIAGDTSHSLVHKISEK 429
G+VH F GD SH I +
Sbjct: 596 LSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKL 655
Query: 430 LMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIK 474
L L ++K++G++ +C HSEKLA+ F L+ + G+ +RV+K
Sbjct: 656 LAELERKMKRVGFVAD-KSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVK 714
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K +SK E REI++ DN RFH F +G CSC DYW
Sbjct: 715 NLRICLDCHTAIKMISKLEG----REIVVRDNNRFHCFSEGMCSCHDYW 759
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 130/300 (43%), Gaps = 43/300 (14%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVYKACSELKDHRVG 114
+F P + ++ M+ Y+ +G + ++V+LF L VY +L + G
Sbjct: 56 IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-KSG 114
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------KDFSNL--SLLKH 166
+ Y++ + + ++ +LDM+ K G++++A FE+ D++++ K
Sbjct: 115 NLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G E L +++ S++ YAK L+ A F ++ ++ +VSWNAM + YA
Sbjct: 175 GNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYA 234
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q + AL F +M++ + P+ + +++C+ + L I
Sbjct: 235 ------------QKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILR 282
Query: 287 YVLRHHIQLSTGVGIALISIQG--------------LGT--GSFVWNSLIDMYGRCGAIQ 330
+ + HI L++ V AL+ + LG+ + WN +I Y R G +
Sbjct: 283 MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLS 342
>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 140/478 (29%), Positives = 213/478 (44%), Gaps = 133/478 (27%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
LS GK +H +K ++D+ V +SL+D YAKC + A F ++ +++V+W+
Sbjct: 129 LSRCDIGKSVHCLSMKTG-YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSG 187
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ GYA Q G+ E AL F + ++ N S S V++ CA +L
Sbjct: 188 MMYGYA------------QMGENEEALWLFKEALFENLAVNDYSFSTVISVCANSTLLEL 235
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGR 325
G++I G ++ S+ VG +L+S+ G G++ +WN+++ +
Sbjct: 236 GRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQ 295
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
QK +EG YF++MK E +EP +
Sbjct: 296 HSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMK-ESRIEPTDK 354
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y +VD+L RAG+ ++ L + MP +P+ + C N ++A AA +FEL
Sbjct: 355 HYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADKVFEL 414
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
P+SSG KVH+F AG+
Sbjct: 415 GPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERR 474
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H +I EKL L E++K GY+ K HSE+LA+AFGLI+
Sbjct: 475 HERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFP 534
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV+KNLR+CGDCH+ K++S + R II+ DN RFH F DG CSC DYW
Sbjct: 535 ADRPIRVMKNLRVCGDCHNAIKFMSICTR----RVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ + A + C L+ ++G VH + G + F+G
Sbjct: 114 PDDHVLPSAT--KSCGILSRCDIGKSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYAR 171
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
MF++MP RNV +W+ MM Y +G EE + LF + E V C+
Sbjct: 172 KMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSTVISVCANST 231
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+G+ + I F+ ++ V ++ ++ KCG +E A F+E NL +
Sbjct: 232 LLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGI 285
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 61/145 (42%), Gaps = 28/145 (19%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
LV N+L++FY+K + + F QK +W+++ I+ F Q
Sbjct: 51 LVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSI------------ISCFAQNELPW 98
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+LEF +M+ ++P+ L +C + +GK +H ++
Sbjct: 99 MSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMK-------------- 144
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAI 329
G FV +SL+DMY +CG I
Sbjct: 145 --TGYDADVFVGSSLVDMYAKCGEI 167
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 148/483 (30%), Positives = 209/483 (43%), Gaps = 140/483 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK+ H H LK +SD+ +NNSL+ FYA C L+ A F K+ Q+ LVSWNAM
Sbjct: 142 LFEGKQAHAHLLKLG-FQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAM-- 198
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
I F +G+ ETAL+ F + Q +P+ ++ V+ ACA + LG
Sbjct: 199 ----------IDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMW 248
Query: 284 IHGYVLRH--------HIQLSTGV----------GIALISIQGLGTGSFV-WNSLI---D 321
H ++LR+ H+ ++ + IA +G+ WNS+I
Sbjct: 249 AHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFA 308
Query: 322 MYGR------------------------CGAIQK-------NEGWRYFEMMKKEYNMEPA 350
M+G+ G + NEG +YF+MM EY +EP
Sbjct: 309 MHGKGELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQ 368
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC-----NPDIAEHAARHL 399
+E Y C+VD+LARAG D+ L + MP +P S + C + +++E+ AR +
Sbjct: 369 LEHYGCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQI 428
Query: 400 FELEPLSS--------------------------------------------GKVHSFIA 415
E E S G H F A
Sbjct: 429 LESEEADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFA 488
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFG 460
GDTSH +I + L + I GY KR HSE+LA+A G
Sbjct: 489 GDTSHPQTKEIYQVLNVVEERIDSTGYKPDYSQAPMVDELNTSKRDSLRLHSERLAIALG 548
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
L++ PG P+R+ KNLR+C DCH T +S+ EII+ D RFHHF DG+CSC
Sbjct: 549 LLNLKPGMPIRIFKNLRVCDDCHKVTGLISEI----FNVEIIVRDRVRFHHFKDGSCSCM 604
Query: 521 DYW 523
DYW
Sbjct: 605 DYW 607
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 157/589 (26%), Positives = 246/589 (41%), Gaps = 171/589 (29%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
F++MPER+V SW +M Y +E +NLF+ +++EG+ +CS + D
Sbjct: 215 FDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDP 274
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ + + N+ VK +LDM K G +E+A F+E
Sbjct: 275 TLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGS------------- 321
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + + N ++ Y + L +A F + ++ +VSWN+M+AGYA
Sbjct: 322 ---------QRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYA----- 367
Query: 232 EEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G+ ++E F MI D+QP+ ++++ VL+AC + KL + V
Sbjct: 368 -------QNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVRE 420
Query: 291 HHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG----AIQK 331
+I+L +LI + Q +GT V +N+LI + G AI+
Sbjct: 421 KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
NEG F+ ++ P ++ Y CMVDLL
Sbjct: 481 VLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLG 535
Query: 363 RAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLS------ 406
RAG+ D+ ++ MP +P +S + E AA LFELEP +
Sbjct: 536 RAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVL 595
Query: 407 -------------------------------------SGKVHSFIAGDTSHSLVHKISEK 429
G+VH F GD SH I +
Sbjct: 596 LSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKL 655
Query: 430 LMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIK 474
L L ++K++G++ +C HSEKLA+ F L+ + G+ +RV+K
Sbjct: 656 LAELERKMKRVGFVAD-KSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVK 714
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K +SK E REI++ DN RFH F +G CSC DYW
Sbjct: 715 NLRICLDCHTAIKMISKLEG----REIVVRDNNRFHCFSEGMCSCHDYW 759
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 130/300 (43%), Gaps = 43/300 (14%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVYKACSELKDHRVG 114
+F P + ++ M+ Y+ +G + ++V+LF L VY +L + G
Sbjct: 56 IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-KSG 114
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------KDFSNL--SLLKH 166
+ Y++ + + ++ +LDM+ K G++++A FE+ D++++ K
Sbjct: 115 NMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKS 174
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G E L +++ S++ YAK L+ A F ++ ++ +VSWNAM + YA
Sbjct: 175 GNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYA 234
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q + AL F +M++ + P+ + +++C+ + L I
Sbjct: 235 ------------QKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILR 282
Query: 287 YVLRHHIQLSTGVGIALISIQG--------------LGT--GSFVWNSLIDMYGRCGAIQ 330
+ + HI L++ V AL+ + LG+ + WN +I Y R G +
Sbjct: 283 MIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLS 342
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 166/645 (25%), Positives = 263/645 (40%), Gaps = 178/645 (27%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF--------LGMFEKMPERN 69
F C +L+ Q+HA I G ++ CAF +F +MPE N
Sbjct: 26 FTSCKTPRDLK---QLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82
Query: 70 VFSWTSMMGMY---NVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGK 115
F W +++ + N E + LF ++ +G V KAC+ R GK
Sbjct: 83 CFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGK 142
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DFSNLSLLKHGKEIHPH 173
++ ++ F + V ++ M++ C ME A F + DF ++
Sbjct: 143 QIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQME-------- 194
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L K + ++++ N ++D + +K A F ++ + +VSWN M++GYA
Sbjct: 195 -LDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA------- 246
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q G A+ F M +++ PN ++L VL A A++ +LGK IH Y ++ +
Sbjct: 247 -----QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV 301
Query: 294 QLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMY--------------- 323
++ +G AL+ ++Q T + W+++I +
Sbjct: 302 EIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHL 361
Query: 324 -GRCGAIQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G+ G + EG +F M K ++P +E Y CMVDLL RAG
Sbjct: 362 MGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAG 421
Query: 366 QFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------ 409
++ ++ MP EP C N + E A L EL P SG
Sbjct: 422 HLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSN 481
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
+H F+ D SHS +I L
Sbjct: 482 LYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGE 541
Query: 433 LYSEIKKIGY-------------MKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRM 478
+ +++ GY +R A HSEK+A+AFGLIST+P PL+++KNLR+
Sbjct: 542 MSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRI 601
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K +S K R+II+ D RFH F G+CSC DYW
Sbjct: 602 CEDCHASLKLISLIYK----RQIIVRDRKRFHQFEHGSCSCMDYW 642
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 41/252 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA-KCRYLKVAHCKFSKIKQKH 214
K F++ + K++H +K ++ D L ++ F A R + A F ++ + +
Sbjct: 24 KPFTSCKTPRDLKQLHAIFIKTGQIQ-DPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPN 82
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
WN +L A ++ E + F + + ++PN + VL ACA+
Sbjct: 83 CFCWNTILRILAETN--------DEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACAR 134
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ---- 330
+ GK+IHG +++ G FV ++L+ MY C ++
Sbjct: 135 ASRLREGKQIHGLIVKF----------------GFHEDEFVISNLVRMYVMCAVMEDAYS 178
Query: 331 ---KN----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
KN +G E+ K++ + + + M+D R G N +MP P S
Sbjct: 179 LFCKNVVDFDGSCQMELDKRKQDGNVVL--WNIMIDGQVRLGDIKSAKNLFDEMP--PRS 234
Query: 384 AEPCNPDIAEHA 395
N I+ +A
Sbjct: 235 VVSWNVMISGYA 246
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 37/174 (21%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L Q M +N D VT + ++ LELG +H + VE+ LG
Sbjct: 257 LFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYS 316
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+FE +P+RN +W++++G + + G E+ + F+L+ GV
Sbjct: 317 KCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIG 376
Query: 102 -YKACSELKDHRVGKDVYDYMISI-----KFEGNACVKRPVLDMFIKCGRMEMA 149
ACS G+ + +M+ + + E C ++D+ + G +E A
Sbjct: 377 ILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGC----MVDLLGRAGHLEEA 426
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 178/715 (24%), Positives = 282/715 (39%), Gaps = 214/715 (29%)
Query: 5 NVTLLLQSMDLT--NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------- 52
+ +L + M L+ +PD T T +++ + + NL+ G +VH+H++ G
Sbjct: 99 DAMVLFRKMLLSGVSPDRITFT-SILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNL 157
Query: 53 -VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
VE+ G +F+ + + NVFSWT ++ Y G+ E++ L + GV
Sbjct: 158 VVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPD 217
Query: 102 -------YKACSELKDHRVGKDVYDYMIS-IKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
AC+ + K ++ IS + +A V +++++ KCG +E A G F
Sbjct: 218 GYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALEEAFGVF 277
Query: 154 EEKD------------------------------------------------FSNLSLLK 165
+ D ++L +
Sbjct: 278 VQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQ 337
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
+GKEIH + + D+ + ++L+ Y +++ A F +++ +VSW++M+AGY
Sbjct: 338 YGKEIHAR-IVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGY 396
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+Q AL F M +QPN+++ + ACA V + G ++H
Sbjct: 397 ------------SQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLH 444
Query: 286 GYVLRHHIQLSTGVGIALISIQG------------LGTGS---FVWNSLIDMYGRCG--- 327
V + V AL+++ G LG W S+ YG+ G
Sbjct: 445 ERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGS 504
Query: 328 ------------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
A Q ++G Y+ +M +++ + PA+E CM
Sbjct: 505 RSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCM 564
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA-----EPC----NPDIAEHAARHLFELEP---- 404
VD+L RAG+ + + M FE S A C + A AA +F+LEP
Sbjct: 565 VDILGRAGKLEAAEQLINTMKFESSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNAT 624
Query: 405 ----LSS-----------------------------------GKVHSFIAGDT--SHSLV 423
LSS +VH F+A H LV
Sbjct: 625 PYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLV 684
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGS 468
+I L +L E++ GY+ A HSE LAL G+IST G+
Sbjct: 685 GEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAGT 744
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PLR+ KNLRMC DCH TK+VSK R I + D R HHF +G CSCGDYW
Sbjct: 745 PLRITKNLRMCSDCHIATKFVSKLV----HRRISVRDGRRHHHFENGVCSCGDYW 795
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 122/291 (41%), Gaps = 71/291 (24%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-----------YKACSE 107
L +F++M ++NV +WTS++ + G++ + + LF ++ GV K
Sbjct: 70 LDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGR 129
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------- 160
++ GK V+ +++ +EG+ V V++M+ KCG +E A F+ N
Sbjct: 130 ERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTII 189
Query: 161 -----------------------------------------LSLLKHGKEIHPHHLKKDD 179
+ L+ K +H +
Sbjct: 190 IAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTG 249
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D V +L++ Y KC L+ A F +I K +VSW++M+A +A Q
Sbjct: 250 LDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFA------------Q 297
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
G ++A++ M ++PN ++ VL A +K F+ GKEIH +++
Sbjct: 298 SGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQ 348
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 28/178 (15%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELC---AF 58
K+ LL MDL VT+ + + L + G ++HA ++ G ++C A
Sbjct: 302 KSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSAL 361
Query: 59 LGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---- 101
+ M FE ER+V SW+SM+ Y+ ++LF + +GV
Sbjct: 362 VKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNS 421
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
AC+ + R G +++ + + + + V +++++ KCGR+E A F
Sbjct: 422 VTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVF 479
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 173/706 (24%), Positives = 283/706 (40%), Gaps = 204/706 (28%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELC 56
V L+ M + + T+A + + +E G+QVHA ++ VC +C
Sbjct: 189 VIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALIC 248
Query: 57 AFL---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------ 101
+L +F+ M R+ +W M+G Y +G+Y E +F+ + GV
Sbjct: 249 MYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTV 308
Query: 102 ----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
K CS+ ++ K ++ ++ +E ++ ++ + KC ++ A F D
Sbjct: 309 FCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368
Query: 158 FS-----------------------NLSLLKHGKEIHPHHL--------KKDDLESDL-- 184
+ +L + + P+H K L S L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428
Query: 185 -----------LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
V +L+D Y K + + F I K +V+W+AML
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML----------- 477
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHH 292
TG Q D E A+E F ++++ ++PN + S V+ AC+ + GK+IH ++
Sbjct: 478 -TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536
Query: 293 IQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK------ 331
+ V AL+++ + + V WNS+I YG+ G +K
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
EG +YF +M K+Y+++ +E Y CMVDL +RA
Sbjct: 597 IMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRA 656
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LS 406
G FD ++ + MPF S C N ++ + AA L L+P LS
Sbjct: 657 GMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLS 716
Query: 407 S-----------------------------------GKVHSFIAGDTSHSLVHKISEKLM 431
+ ++ SF+AGD SH + KL
Sbjct: 717 NIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLE 776
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L ++K +GY K HSE+LA+A+GLI+ PG+P+++ KNLR
Sbjct: 777 ELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLR 836
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CGDCH+ + +S E ER +I+ D+ RFHHF G CSCG YW
Sbjct: 837 ICGDCHNVIELISLIE----ERTLIVRDSNRFHHFKGGVCSCGGYW 878
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H LK LE D+ V SL+D Y K + F ++ K++VSW ++L+GYA
Sbjct: 123 GRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYA 181
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G +E+ + ++M + PN + + VL A A + G ++H
Sbjct: 182 RNGLNDEV------------IHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229
Query: 287 YVLRHHIQLSTGVGIALISI----QGLGTG-----------SFVWNSLIDMYGRCGAIQK 331
++++ + +T V ALI + + +G S WN +I Y G
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL- 288
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG++ F M+ ++ + +C + L ++ + LNF K++
Sbjct: 289 -EGFQMFHRMRLA-GVKLSRTVFCTALKLCSQQRE----LNFTKQL 328
>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
Length = 960
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 181/708 (25%), Positives = 281/708 (39%), Gaps = 211/708 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LC-AFLGMF 62
L + M +T P + T C + +LG ++HA ++ +C A + M+
Sbjct: 271 LFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMY 330
Query: 63 E---KMPER----------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
KMP+ +V +W S++ Y Y+E + F +I G
Sbjct: 331 TRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMT 390
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEK 156
+ A L + G +++ Y+I ++ N V ++DM+ KC M A +K
Sbjct: 391 SIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450
Query: 157 DFSNLSLLKHG---------------------------------------------KEIH 171
D + + + G KEIH
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIH 510
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
H L+K L D ++ N L+D Y KCR + A F IK K +VSW +M++ AL G
Sbjct: 511 CHILRKGLL--DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNE 568
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E A+E F RM++T + ++++L +L+A A + G+EIH Y+LR
Sbjct: 569 SE------------AVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRK 616
Query: 292 HIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGR--CG------- 327
L + +A++ + G + S+I+ YG CG
Sbjct: 617 GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 676
Query: 328 ------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
A +EG + ++M+ EY +EP E Y C+VD+L R
Sbjct: 677 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 736
Query: 364 AGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLS------- 406
A + F+K M EP++ C +I E AA+ L ELEP +
Sbjct: 737 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 796
Query: 407 ------------------------------------SGKVHSFIAGDTSHSLVHKISEKL 430
GKVH F A D SH +I EKL
Sbjct: 797 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 856
Query: 431 MRLYSEIKK-IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
+ ++++ +GY+ GHSE++A+A+GL+ T + LR+ KN
Sbjct: 857 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKN 916
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K VSK + R+I+M D RFHHF G CSCGD W
Sbjct: 917 LRVCRDCHTFCKLVSKLFR----RDIVMRDANRFHHFESGLCSCGDSW 960
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 130/348 (37%), Gaps = 91/348 (26%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVC--GVELCAFLG--- 60
+T Q +D++ + +A + + C K + G Q+H+ + EL G
Sbjct: 64 LTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLV 123
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F++MP+R F+W +M+G Y G + L++ + EGV
Sbjct: 124 FMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV----- 178
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+G + ++ AC K L ++
Sbjct: 179 -----PLGLSSFPALL------KACAK---------------------------LRDIRS 200
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGY 225
G E+H L K S + N+L+ YAK L A F ++K V WN++L+ Y
Sbjct: 201 GSELHSL-LVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ G E LE F M T PN+ ++ L AC KLGKEIH
Sbjct: 260 STSGKSLE------------TLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
VL+ S +V N+LI MY RCG + + E
Sbjct: 308 ASVLKSSTHSSE---------------LYVCNALIAMYTRCGKMPQAE 340
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 175/645 (27%), Positives = 271/645 (42%), Gaps = 158/645 (24%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
L+F + P+ N + + + V + +F+ MPERNV SWTSM+ Y G
Sbjct: 73 LLFDQMPQRNTVSFNGMISGY--VKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMV 130
Query: 87 EEIVNLFYLLIDEGVYKAC----SELKDHRV--GKDVYDYMISIKFEGNACVKRPVLDMF 140
EE LF+ + V LK+ R+ K ++D MI E + V ++ +
Sbjct: 131 EEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFD-MIP---EKDVVVVTNMIGGY 186
Query: 141 IKCGRMEMASGEFEEKDFSNL--------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192
+ GR++ A F+E N+ K+G+ L + E + + +++
Sbjct: 187 CQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLM 246
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF-------------REE------ 233
Y + +K A F + K +V+ N M+ + L G R+E
Sbjct: 247 GYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAM 306
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I F + G AL F+RM + + N S+ VL+ CA + G+++H ++R
Sbjct: 307 IKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEF 366
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG----------- 327
V LI++ + L +WNS+I Y + G
Sbjct: 367 DQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHD 426
Query: 328 ----AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+Q +E G+ FE MK Y +EP +E Y CMVDLL RAG
Sbjct: 427 MCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAG 486
Query: 366 QFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG------- 408
+ D+ + ++KMP EP + C D+AE A L +LEP ++G
Sbjct: 487 RVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSH 546
Query: 409 -----------------------------------KVHSFIAGDT-SHSLVHKISEKLMR 432
KVH F GD+ SH H I++ L +
Sbjct: 547 MYATKGRWRDVEVLRKKINRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEK 606
Query: 433 LYSEIKKIGYM-------------KRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRM 478
L +++ GY ++ + G HSE+LA+A+GL+ G P+RV+KNLR+
Sbjct: 607 LSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRV 666
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCHS K ++K REII+ D RFHHF DG+CSC D+W
Sbjct: 667 CGDCHSAIKLIAKVTG----REIILRDANRFHHFKDGSCSCKDFW 707
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 171/649 (26%), Positives = 265/649 (40%), Gaps = 212/649 (32%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELG--IQVHA-------HLIVCGVEL-----CAFLG- 60
PD T T AL C +L +L+ ++V A + VC L C +G
Sbjct: 107 ARPDSTTFTLAL--TACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGD 164
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F+ MP ++ +W++M+ + G E + ++ S +++H V +D
Sbjct: 165 AIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMY------------SRMREHGVAED- 211
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLKHGKEIHPHH 174
V V+ G M + G F L+HG
Sbjct: 212 ------------EVVMVGVIQACTLTGNTRMGASVHGRF----------LRHG------- 242
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+ D+++ SL+D YAK + VA F + ++ VSWNA+ I
Sbjct: 243 -----MRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNAL------------I 285
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+GF Q G + AL+ F M + +QP++ +L L ACA V KLGK IHG++LR ++
Sbjct: 286 SGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LE 344
Query: 295 LSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGR--CG---------- 327
+G A++ + L + V WN++I G CG
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL 404
Query: 328 ---AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
I+ + EG +F+ M E+ +EP + C+VDLLAR+G
Sbjct: 405 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGL 464
Query: 367 FDDTLNFMKKMPFEPSSAEPCNP---------------DIAEHAARHLFELEPLSSGKV- 410
++ + M EP P ++ E A+ + E +P G +
Sbjct: 465 VEEANEMLASM-----HTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLA 519
Query: 411 ------------------------------------------HSFIAGDTSHSLVHKISE 428
H+F+ D SH +I +
Sbjct: 520 LVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILK 579
Query: 429 KLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIK 474
+ +L E++K+GY+ R HSE+LA+AFGL++TSPG+ L +IK
Sbjct: 580 MISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIK 639
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH KY+SK +REI++ D RFHHF DGACSCGDYW
Sbjct: 640 NLRVCGDCHDAIKYISKIV----DREIVVRDAKRFHHFKDGACSCGDYW 684
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 150/586 (25%), Positives = 244/586 (41%), Gaps = 171/586 (29%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
ER++ SW++M+ Y EE + LF + G ACS + + +G+
Sbjct: 232 ERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRW 291
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
V+ + + E +K ++ ++ CG + A F++ G E+
Sbjct: 292 VHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDD-----------GGEL------ 334
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
DL+ NS++ Y +C ++ A F + +K +VSW+AM++GYA
Sbjct: 335 -----LDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYA---------- 379
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q+ AL F M ++P+ +L ++AC + LGK IH Y+ R+ +Q++
Sbjct: 380 --QHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVN 437
Query: 297 TGVGIALISI-------------------QGLGTGSFVWNSLIDMYGRCGAIQK------ 331
+ LI + +G+ T WN++I G++++
Sbjct: 438 VILSTTLIDMYMKCGCVENALEVFYAMEEKGVST----WNAVILGLAMNGSVEQSLNMFA 493
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
N+G YF M E+ +E ++ Y CMVDLL RA
Sbjct: 494 DMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRA 553
Query: 365 GQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEP---------- 404
G + + MP P A C + ++ E R L +L+P
Sbjct: 554 GLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLS 613
Query: 405 ---------------------------------LSSGKVHSFIAGDTSHSLVHKISEKLM 431
++G VH F+AGD +H ++ I L
Sbjct: 614 NIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLD 673
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
+ +++K GY+ K HSEKLA+AFGLI+ SP +P+RV KNLR
Sbjct: 674 VVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLR 733
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH+ K +SKA +R+I++ D +RFHHF GACSC D+W
Sbjct: 734 ICNDCHTVVKLISKA----FDRDIVVRDRHRFHHFKHGACSCMDFW 775
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/396 (20%), Positives = 166/396 (41%), Gaps = 62/396 (15%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-------DEGVY----KACSE 107
L +F + N F+W ++M + L L Y L D Y + C+
Sbjct: 58 LRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAA 117
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------ 161
G+ ++ + +S F+G+ V+ +++++ CG + A FEE +L
Sbjct: 118 RVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTL 177
Query: 162 --SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVS 217
++ G+ + + E + + +NS++ + + ++ A F+ + +++ +VS
Sbjct: 178 LAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVS 237
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W+AM++ Y Q GE AL F M + + + + + L+AC++V
Sbjct: 238 WSAMVSCY------------EQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLN 285
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV-----------------WNSLI 320
++G+ +HG ++ ++ + ALI + G V WNS+I
Sbjct: 286 VEMGRWVHGLAVKVGVEDYVSLKNALIHLYS-SCGEIVDARRIFDDGGELLDLISWNSMI 344
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
Y RCG+IQ E ++ M +K+ + + M+ A+ F + L ++M
Sbjct: 345 SGYLRCGSIQDAE-MLFYSMPEKD------VVSWSAMISGYAQHECFSEALALFQEMQLH 397
Query: 381 PSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFIA 415
+ A A HL L+ GK +H++I+
Sbjct: 398 GVRPDETALVSAISACTHLATLDL---GKWIHAYIS 430
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 161/637 (25%), Positives = 254/637 (39%), Gaps = 201/637 (31%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+TY+ + + C ++ VH H+ G E FL +F+
Sbjct: 16 AITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFD 75
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+MP+RNV SWT+M+ Y+ + ++ L++ EGV
Sbjct: 76 EMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGV---------------------- 113
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
RP +M+ + G + S+LK G LESD
Sbjct: 114 ----------RP--NMYTYSSVLRACDGLLNLRQLHG-SILKVG------------LESD 148
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V ++L+D Y+K A F+++ LV WN++ I GF Q DG
Sbjct: 149 VFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSI------------IGGFAQNSDG 196
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA- 302
+ L + RM + D + +L+ VL AC + +LG+++H +VL++ L +
Sbjct: 197 DETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLD 256
Query: 303 -----------------------LIS----IQGLGTGSFVWNSL---------------I 320
+IS I GL F ++L I
Sbjct: 257 MYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYI 316
Query: 321 DMYGRCGAIQK----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
+ G A N+GW YF+ MK+ + ++P E Y C++DLL RAG+ D+ + + +
Sbjct: 317 TILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHE 376
Query: 377 MPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG------------------ 408
M EP + C N D+A +AA+ + +L+P +G
Sbjct: 377 MNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDV 436
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+VH+FI GD SH + +I +L +L + ++GY
Sbjct: 437 AEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGY- 495
Query: 444 KRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
+P HSEKLA+ FGL+S + + KNLR+CGDCH
Sbjct: 496 --VPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFA 553
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VS+ E R I++ D R+HHF G CSCGDYW
Sbjct: 554 KLVSQLEN----RVIVIRDPIRYHHFRGGVCSCGDYW 586
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 156/568 (27%), Positives = 239/568 (42%), Gaps = 144/568 (25%)
Query: 81 NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG------KDVYDYMISIKFEGNACVKR 134
+V Y+ +++ L+D +Y C ++D R+ DV + + I
Sbjct: 658 SVKTLYDTERHVYGALLD--MYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNE 715
Query: 135 PVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
++FI+ R ++ EF +N+ LL GK+IH H +K ES+L V N+L
Sbjct: 716 QAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGH-ESELFVGNAL 774
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
+D YAKC ++ + FS ++ + VSWN ++ GY+ GF GE AL F
Sbjct: 775 IDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGF------------GEAALSVF 822
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS----- 305
M + ++ S VL ACA ++H + + T V +LI
Sbjct: 823 REMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKC 882
Query: 306 ---------IQGLGTGSFV-WNSLIDMYGRCG---------------AIQKN-------- 332
+ L V WN++I Y G +I+ N
Sbjct: 883 GCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALL 942
Query: 333 ----------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
+G F+ M+ ++ +EP+ME Y C+V LL RAG+ +D LNF+ +P PS
Sbjct: 943 SVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPS 1002
Query: 383 SA------EPC----NPDIAEHAARHLFELEP--------LSS----------------- 407
+ C N ++ +A + E+EP LS+
Sbjct: 1003 AMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKS 1062
Query: 408 ------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC 449
G+VH+F G H + I+ L L + + GY+
Sbjct: 1063 MRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEV 1122
Query: 450 --------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
HSE+LALA+GL+ T PG P+R++KNLR C DCH+ K +SK K
Sbjct: 1123 LHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVK- 1181
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
+EII+ D RFHHF +G CSCGDYW
Sbjct: 1182 ---QEIIVRDINRFHHFEEGTCSCGDYW 1206
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 158/403 (39%), Gaps = 111/403 (27%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VEL-CA--FLGMF 62
L S+ P + YA + Q C + G VH H++ G ++L CA L M+
Sbjct: 416 LTSLAFPWPGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMY 475
Query: 63 EK-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
K +PERN+ S+ +++ + + G +EE LF L EG
Sbjct: 476 TKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLT 535
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----- 154
V K + + V+ + + NA V ++D + CG + A F+
Sbjct: 536 TVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGK 595
Query: 155 -------------EKD---------------------FSNLSLLKH---------GKEIH 171
E D F+ S+L+ GK IH
Sbjct: 596 DAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIH 655
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+K +++ V +L+D YAKC ++ A F + ++ W+ M++ YA
Sbjct: 656 ACSVKTL-YDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYA----- 709
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR- 290
Q E A E F RM+++ + PN SLS VL ACA + LGK+IH + ++
Sbjct: 710 -------QCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKI 762
Query: 291 -HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
H +L FV N+LID+Y +C ++ +
Sbjct: 763 GHESEL------------------FVGNALIDLYAKCSDMESS 787
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 175/715 (24%), Positives = 283/715 (39%), Gaps = 253/715 (35%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PD T+ + + C +L G +VHAH++ CG + A
Sbjct: 133 PD--VYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYE-----EIVNLFY----------LLIDEGVYK 103
+ +F+KMP R+ SW +M+ GY+E E + LF+ L+ V
Sbjct: 191 M-LFDKMPTRDRISWNAMIS-----GYFENDECLEGLELFFRMRELSIDPDLMTMTSVIS 244
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF-- 158
AC L D R+G ++ Y++ ++GN V ++ M++ G + A F E +D
Sbjct: 245 ACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS 304
Query: 159 -------------------------------------------SNLSLLKHGKEIHPHHL 175
++L L G ++H
Sbjct: 305 WTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAE 364
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
+ + ++ N SL+D Y+KC+ ++ A F +I K ++SW +++ G + E
Sbjct: 365 RTGHILYVVVAN-SLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFE-- 421
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL FF +MI +PN+++L L+ACA+V GKEIH + L+
Sbjct: 422 ----------ALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALK----- 465
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI-------------------------Q 330
G+G F+ N+++D+Y RCG + Q
Sbjct: 466 -----------AGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQ 514
Query: 331 KNEGWRYFEMMKK--------------------------------------EYNMEPAME 352
K +G E+ K+ Y++ P ++
Sbjct: 515 KGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLK 574
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNPD----IAEHAARHLFEL 402
Y C+VDLL RAG+ ++ F+++MP +P A C + E AA+H+F+
Sbjct: 575 HYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQ 634
Query: 403 EPLS-------------------------------------------SGKVHSFIAGDTS 419
+ S GKVH+F++GD
Sbjct: 635 DAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNF 694
Query: 420 HSLVHKISEKLMRLYSEIKKIGY-------MKRIPA------CGHSEKLALAFGLISTSP 466
H + +I+ L Y ++K G+ M I CGHSE+ A+A+ LI+++P
Sbjct: 695 HPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTSKADIFCGHSERQAIAYSLINSAP 754
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
G P+ V KNL MC CHS K++SK + REI + D +FHHF DG CSCGD
Sbjct: 755 GMPIWVTKNLYMCQSCHSTVKFISKIVR----REISVRDTEQFHHFKDGLCSCGD 805
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/381 (23%), Positives = 164/381 (43%), Gaps = 84/381 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F +M ER++FSW ++G Y G+++E + L++ ++ G+ DVY +
Sbjct: 91 VFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRP------------DVYTF 138
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++ +C G M+ L G+E+H H + + D
Sbjct: 139 PSVLR----SCA-----------GAMD----------------LVRGREVHAH-VVRFDF 166
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V N+L+ Y KC + A F K+ + +SWNAM++GY +
Sbjct: 167 DMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGY------------FEN 214
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ LE F RM + + P+ ++++ V++AC + +LG ++H YV+R +
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNIS-- 272
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
V+NSLI MY G ++ E F M+ + C+ +L
Sbjct: 273 --------------VYNSLIQMYLSVGHWKEAES--VFSGMECRDVVSWTTIISGCVDNL 316
Query: 361 LA-RAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTS 419
L +A + T+ MP E + A + A L +L+ K+H +A T
Sbjct: 317 LPDKALETYKTMEITGTMPDEVTIASVLS------ACASLGQLD--MGMKLHE-LAERTG 367
Query: 420 HSLVHKISEKLMRLYSEIKKI 440
H L ++ L+ +YS+ K+I
Sbjct: 368 HILYVVVANSLIDMYSKCKRI 388
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+L+ + + + A F ++ ++ L SWN ++ GY GF +E
Sbjct: 71 LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDE------------ 118
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL + R++ ++P+ + VL +CA G+E+H +V+R + V
Sbjct: 119 ALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVV----- 173
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
N+LI MY +CG +
Sbjct: 174 -----------NALITMYVKCGDV 186
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 163/607 (26%), Positives = 247/607 (40%), Gaps = 167/607 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP+RN F WT+++ Y + G E+ D + +
Sbjct: 214 LFDEMPKRNEFIWTTLITGY----------------VRNGDLTGAREILDTMTEQPGIAW 257
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------SLLKHGKEIHPH 173
I + + L +F K M + + +E ++++ GK++H +
Sbjct: 258 NAMISGYLHHGLFEDALTLFRK---MRLLGVQVDESTYTSVISACADGGFFLLGKQVHAY 314
Query: 174 HLKKD---DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
LK + D + L V N+L+ Y K + A F ++ K +++WN +L+GY G
Sbjct: 315 ILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR 374
Query: 231 REE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
EE I+G Q G GE AL+ F++M +PN + +G + A
Sbjct: 375 MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITA 434
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-----------LGTGSFV----W 316
C+ + + G+++H ++ + VG A+I++ T FV W
Sbjct: 435 CSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSW 494
Query: 317 NSLIDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKK 343
NS+I G+ G AI+ EG RYF M +
Sbjct: 495 NSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
Y + P + Y M+DL RAG+F D N + MPFE + C N D+
Sbjct: 555 NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGI 614
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
AA LF+L P G KV
Sbjct: 615 EAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENKV 674
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F+ DT H V I L +L E+KKIGY+ K HSEKLA
Sbjct: 675 HVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKLA 734
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ G+ +RV KNLR+CGDCH+ K++SK REI++ D RFHHF +G
Sbjct: 735 VAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVG----REIVVRDGKRFHHFKNGE 790
Query: 517 CSCGDYW 523
CSC +YW
Sbjct: 791 CSCRNYW 797
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 93/428 (21%), Positives = 166/428 (38%), Gaps = 102/428 (23%)
Query: 32 CPK-LNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERNVFS 72
CP+ L++ L VH H+I G +L + +F+++P+ +V +
Sbjct: 22 CPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIA 81
Query: 73 WTSMMGMYNVLGYYE---EIVNLFYLLIDEGVY-----KACSELKDHRVGKDVYDYMISI 124
T+++ Y+ LG + EI N L + + V+ S + D +++ M
Sbjct: 82 RTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWA 141
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
F+ + VL E G+ +++K G EI P L
Sbjct: 142 NFQPDDFTFASVLSASTLIFYDERQCGQMHG------TVVKFGIEIFPAVL--------- 186
Query: 185 LVNNSLMDFYAKC---------RYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFR 231
N+L+ Y KC + A F ++ +++ W ++ GY L G R
Sbjct: 187 ---NALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAR 243
Query: 232 E---------------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
E I+G+ +G E AL F +M +Q + + + V++ACA
Sbjct: 244 EILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGG 303
Query: 277 GFKLGKEIHGYVLRHHIQ----LSTGVGIALISI---QGLGTGS------------FVWN 317
F LGK++H Y+L++ + VG LI++ G G+ WN
Sbjct: 304 FFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWN 363
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+L+ Y G ++ E +F M E + + M+ LA+ G + L +M
Sbjct: 364 TLLSGYVNAGRME--EAKSFFAQMP-----EKNLLTWTVMISGLAQNGFGEQALKLFNQM 416
Query: 378 P---FEPS 382
+EP+
Sbjct: 417 KLDGYEPN 424
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 147/579 (25%), Positives = 242/579 (41%), Gaps = 182/579 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMP+RNV SWT+M+ Y+ ++ + L++ EGV
Sbjct: 22 VFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV------------------- 62
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
RP +MF + G F + + ++K G L
Sbjct: 63 -------------RP--NMFTYSSVLRACDGLFNLRQL-HCCIIKIG------------L 94
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+SD+ V ++L+D Y++ L+ A F ++ LV W++++AG+A Q
Sbjct: 95 DSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFA------------QN 142
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
DG+ AL F RM + +L+ VL AC + +LG+++H +VL++ L
Sbjct: 143 SDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNA 202
Query: 301 IA-------------LISIQGLGTGSFVWNSLIDMYGRCG---------------AIQKN 332
+ + ++ + W+++I + G I+ N
Sbjct: 203 LLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPN 262
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG YF MK+ + ++P E Y CM+DLL RAG+ + ++ +
Sbjct: 263 YVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLI 322
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------- 408
+M EP + C N D+A HAA+ + L+P +G
Sbjct: 323 NEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWN 382
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
++H+FI GD SH + +I+ +L +L ++ +G
Sbjct: 383 DVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVG 442
Query: 442 YMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
Y +P HSEKLA+ FGL+S G +R+ KNLR+CGDCH
Sbjct: 443 Y---VPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHL 499
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK ++K E +R I++ D R+HHF DG CSCGD+W
Sbjct: 500 FTKLLAKME----QRIIVIRDPVRYHHFQDGLCSCGDFW 534
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 38/190 (20%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ Y K L A F K+ +++VSW M++ Y+ ++ AL
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDK------------AL 51
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
EF M++ ++PN + S VL AC + F L +++H +++
Sbjct: 52 EFLVLMLREGVRPNMFTYSSVLRACDGL--FNL-RQLHCCIIK----------------I 92
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
GL + FV ++LID+Y R G ++ R F+ M + + + ++ A+
Sbjct: 93 GLDSDVFVRSALIDVYSRWGELEN--ALRVFDEM-----VTGDLVVWSSIIAGFAQNSDG 145
Query: 368 DDTLNFMKKM 377
D+ L K+M
Sbjct: 146 DEALRLFKRM 155
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 36/175 (20%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
TY+ + + C L NL Q+H +I G++ F L +F++M
Sbjct: 68 TYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEM 124
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
++ W+S++ + +E + LF + G V +AC+ L +G+
Sbjct: 125 VTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGR 184
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHG 167
V+ +++ K++ + + +LDM+ KCG +E A+ F EKD + S + G
Sbjct: 185 QVHVHVL--KYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 168/634 (26%), Positives = 256/634 (40%), Gaps = 187/634 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDEG----VYKACSELKD 110
+F+K ++V +W SM+ Y G E + +FY + + E + K C+ LK+
Sbjct: 255 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKE 314
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
R + ++ ++ F + ++ ++ + KC M
Sbjct: 315 LRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMIS 374
Query: 147 --------EMASGEFEE--------KDFSNLSLLKHGKEIHPHHLK----KDDLESDLLV 186
E A G F E +F+ +L I P + K + E V
Sbjct: 375 GFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 434
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D Y K + A FS I K +V+W+AMLAGYA Q G+ E A
Sbjct: 435 GTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA------------QAGETEAA 482
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALIS 305
++ FS + + ++PN + S +L CA GK+ HG+ ++ + S V AL++
Sbjct: 483 IKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLT 542
Query: 306 IQG----LGTGSFV-----------WNSLIDMYGRCGAIQK------------------- 331
+ + + V WNS+I Y + G K
Sbjct: 543 MYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVT 602
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG +YF++M ++ + P E CMVDL +RAGQ + + + M
Sbjct: 603 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNM 662
Query: 378 PFEPSS----------------------AEPCNPDIAEHAARHLF--------------- 400
P S AE I E +A ++
Sbjct: 663 PNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERA 722
Query: 401 -----------ELEPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
+ EP S K ++F+AGD SH L +I KL L + +K +GY
Sbjct: 723 KVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 782
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSE+LA+AFGLI+T GSPL +IKNLR+CGDCH K ++
Sbjct: 783 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIA 842
Query: 491 KAEKREREREIIMIDNYRFHHF-VDGACSCGDYW 523
K E EREI++ D+ RFHHF DG CSCGD+W
Sbjct: 843 KIE----EREIVVRDSNRFHHFSSDGVCSCGDFW 872
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 56/244 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ERNV +WT+++ Y EE++ LF + DEG
Sbjct: 154 VFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGT------------------- 194
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ N+ L + + G + G ++H + K+ L
Sbjct: 195 ------QPNSFTFAAALGVLAEEG------------------VGGRGLQVHTV-VVKNGL 229
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ + V+NSL++ Y KC ++ A F K + K +V+WN+M++GYA G E
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE------- 282
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F M ++ + S + ++ CA +K + +++H V+++ +
Sbjct: 283 -----ALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIR 337
Query: 301 IALI 304
AL+
Sbjct: 338 TALM 341
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H +K L+ D+ V SL+D Y K K F ++K++++V+W +++GYA
Sbjct: 116 GRQLHCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYA 174
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
EE+ L F RM QPN+ + + L A+ G ++H
Sbjct: 175 RNSLNEEV------------LTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 222
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
V+++ GL V NSLI++Y +CG ++K
Sbjct: 223 VVVKN----------------GLDKTIPVSNSLINLYLKCGNVRK 251
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 167/673 (24%), Positives = 268/673 (39%), Gaps = 211/673 (31%)
Query: 43 QVHAHLIVCGVELCAFLGM------------------FEKMPERNVFSWTSMMGMYNVLG 84
QV+ LIV G+ C FL + F ++ E ++ W +++ Y
Sbjct: 20 QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79
Query: 85 YYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ + ++ + V+ KAC +GK ++ F N V+
Sbjct: 80 IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 139
Query: 135 PVLDMFIKCGRMEMA-------------------SGEFEEKD------------------ 157
++ M+ K G++ A SG + D
Sbjct: 140 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 199
Query: 158 -----------FSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHC 205
++N+ L GK IH K + E D+++ SL YAK ++VA
Sbjct: 200 DWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARF 257
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F+++++ +L+ WNAM++GYA G+ GE A++ F MI +++ ++I++
Sbjct: 258 FFNRMEKPNLILWNAMISGYANNGY------------GEEAIKLFREMITKNIRVDSITM 305
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF----- 314
+ A AQV +L + + GY+ + + T V LI + L F
Sbjct: 306 RSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD 365
Query: 315 ----VWNSLIDMYGRCGAIQK---------------------------------NEGWRY 337
+W+ +I YG G Q+ EGW
Sbjct: 366 KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWEL 425
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN--- 388
F +M ++ +EP + Y C+VDLL RAG + +F+ MP +P + C
Sbjct: 426 FHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHR 484
Query: 389 -PDIAEHAARHLFELEPLSSG--------------------------------------- 408
+ E AA LF L+P ++G
Sbjct: 485 KVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 544
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CG 450
+ +F GD SH +I E+L RL +K GY+ + + C
Sbjct: 545 EINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCH 604
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSE+LA+A+G+IST+PG+ LR+ KNLR C +CHS K +SK +REII+ D RFH
Sbjct: 605 HSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLV----DREIIIRDAKRFH 660
Query: 511 HFVDGACSCGDYW 523
HF DG CSCGD+W
Sbjct: 661 HFKDGVCSCGDFW 673
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/539 (28%), Positives = 231/539 (42%), Gaps = 168/539 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M +++ SW +MM Y G + E++ LF ++G ++
Sbjct: 203 VFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELF---------------DKMKLGNVTWNV 247
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL---------KHGKEIH 171
+I+ + N K + +M F + +S+L + G H
Sbjct: 248 IIAAYMQ-NGHAKEAISSFH------QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFH 300
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
++ L S+ LV NSL+D YAKC L + F+++ K VSWNAML+GYA+
Sbjct: 301 ACIIQMGFL-SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAV---- 355
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
+G G+ A+ FS M ++ +Q +++S VL+AC RH
Sbjct: 356 --------HGHGDRAIALFSLMQESQVQIDSVSFVSVLSAC-----------------RH 390
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351
G ++ EG + F M +Y+++P +
Sbjct: 391 ----------------------------------AGLVE--EGRKIFHSMSDKYHIKPDL 414
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E Y CMVDLL RAG FD+TL F+K MP EP + C N + E A HL +
Sbjct: 415 EHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK 474
Query: 402 LEP--------LSS-----------------------------------GKVHSFIAGDT 418
LEP LSS KVH+F GD
Sbjct: 475 LEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDK 534
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
SH + + L +++KIGY+ K + HSE+LA+ F L++T
Sbjct: 535 SHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNT 594
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PGS ++++KNLR+C DCH+ TK++SK R II+ D RFHHF DG CSC DYW
Sbjct: 595 PPGSTIQIVKNLRVCADCHTTTKFISKITT----RRIIVRDATRFHHFEDGICSCNDYW 649
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/344 (21%), Positives = 129/344 (37%), Gaps = 101/344 (29%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG----------VELCAFL-------GMFEKMPE 67
Y + C LN L +Q+HA +IV G + L + +F+ P
Sbjct: 55 YPRLLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPN 111
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
+ W SM+ Y Y E + ++Y ++++G +
Sbjct: 112 PSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLER----------------------- 148
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
D+FI G ++M +S + LK +E+ K+D ++
Sbjct: 149 ----------DVFIGAGLVDM---------YSKMGDLKRAREVFDKMPKRD-----VVAW 184
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------- 233
N+++ ++ VA F ++ + VSW M+AGYA G E
Sbjct: 185 NAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVT 244
Query: 234 ----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
I + Q G + A+ F +M + PN+++ VL A A + F+ G H ++
Sbjct: 245 WNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACII 304
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ G + + V NSLIDMY +CG + +E
Sbjct: 305 Q----------------MGFLSNTLVGNSLIDMYAKCGQLDYSE 332
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------G 100
C VE+ L +F+KM NV +W ++ Y G+ +E ++ F+ + E
Sbjct: 227 CFVEV---LELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVS 282
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD 157
V A + L R G + +I + F N V ++DM+ KCG+++ + F E KD
Sbjct: 283 VLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKD 342
Query: 158 FSNLSLLKHGKEIHPH 173
+ + + G +H H
Sbjct: 343 TVSWNAMLSGYAVHGH 358
>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
Length = 665
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 215/505 (42%), Gaps = 149/505 (29%)
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
++ L+ G+++H + +K +D V +L+D Y KC F + + S N
Sbjct: 169 DVGLVSVGQQLHGYAVKAG-CRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCN 227
Query: 220 AMLAGY--------ALGGFRE--------EITGFT-------QYGDGETALEFFSRMIQT 256
A++AG AL F+E + +T Q G A+EFF M
Sbjct: 228 ALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ 287
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR----HHIQLSTG----------VGIA 302
+PN++++ VL A A V G+ H + LR H + +S+ V A
Sbjct: 288 GTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDA 347
Query: 303 LISIQGLGTGSFV-WNSLIDMYGRCG---------------------------------A 328
I + + + V WN++I Y G A
Sbjct: 348 RIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQA 407
Query: 329 IQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------S 382
EG YF+ M EY + P ME Y CMV LL RAG+ D+ + + MPFEP S
Sbjct: 408 GLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGS 467
Query: 383 SAEPC----NPDIAEHAARHLFELEPLSSG------------------------------ 408
C N D+AE AA LF LEP ++G
Sbjct: 468 LLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGL 527
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG----- 450
KVH +AGD SH ++ I EK+ +L +++K+G+ +P+
Sbjct: 528 KKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGF---VPSTDFVLHD 584
Query: 451 ------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERE 498
HSEKLA+A GLISTSPG+ LRVIKNLR+CGDCH K++S E
Sbjct: 585 VEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEG---- 640
Query: 499 REIIMIDNYRFHHFVDGACSCGDYW 523
REI + D RFHHF G CSCGD+W
Sbjct: 641 REISVRDTNRFHHFSGGKCSCGDFW 665
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 74/187 (39%), Gaps = 45/187 (24%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREE---- 233
L D V +SL+ Y + A F + Q+ +V W+A++A +A G E
Sbjct: 48 LARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRL 107
Query: 234 --------------------ITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAAC 272
++G + G A+ + M + ++P+ +S L+A
Sbjct: 108 LEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAV 167
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
V +G+++HGY ++ G + V +LIDMYG+CG Q
Sbjct: 168 GDVGLVSVGQQLHGYAVK----------------AGCRADACVVTALIDMYGKCG--QAA 209
Query: 333 EGWRYFE 339
E R F+
Sbjct: 210 EVVRVFD 216
>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
mitochondrial [Vitis vinifera]
gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
Length = 610
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 160/590 (27%), Positives = 246/590 (41%), Gaps = 197/590 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++M + F W ++M Y G ++ V+++ + GV KAC+EL +
Sbjct: 91 LFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAE 150
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM---EMASGEFEEKD---------- 157
G ++ +++ E A V+ ++ M++K G + E G E+D
Sbjct: 151 LWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAV 210
Query: 158 -----FSNLSL------------------------------LKHGKEIHPHHLKKDDLES 182
FS+ +L L+ G+EI+ +++ ++S
Sbjct: 211 CVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIY-EFAREEGIDS 269
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+++V+N+ +D AKC + A F ++ Q++++SW+ ++ GYA+ G +
Sbjct: 270 NIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNG------------E 317
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E AL FSRM +QPN ++ VL+AC+
Sbjct: 318 SEKALALFSRMKNQGVQPNYVTFLAVLSACSHT--------------------------- 350
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK--EYNMEPAMEQYCCMVDL 360
GR NEGW+YF M + + N++P E Y CMVDL
Sbjct: 351 ---------------------GRV-----NEGWQYFNFMAQSDDKNIQPRKEHYACMVDL 384
Query: 361 LARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP------ 404
L R+G ++ NF+K MP E + A N + +H A LFEL P
Sbjct: 385 LGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYH 444
Query: 405 --LSS-----------------------------------GKVHSFIAGDTSHSLVHKIS 427
LS+ G++H GD SH I
Sbjct: 445 VLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASIL 504
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
KL L ++K +GY+ K HSEKLA+AF LI+ SP P+RV+
Sbjct: 505 AKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVM 564
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH+ K VS R REIIM D RFHHF +G CSC D+W
Sbjct: 565 KNLRICGDCHTFCKLVS----RITMREIIMRDKNRFHHFKNGICSCKDFW 610
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF--------------LG--- 60
PD T+ + + C +L L G+ +H H++ G+E A LG
Sbjct: 133 PD--PFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAE 190
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F M ER++ +W +++ + G+ + + F + G+ AC L
Sbjct: 191 FLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLG 250
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
G+++Y++ + N V LDM KCG M+ A F+E N+
Sbjct: 251 CLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNV 302
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 41/167 (24%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIV--CGVELCAFLG------ 60
PD T+ AL C L LE G +++ +++IV +++CA G
Sbjct: 234 PDSVTIVSAL--SACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F++MP+RNV SW++++G Y V G E+ + LF + ++G V ACS
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351
Query: 110 DHRVGKDVYDYM-------ISIKFEGNACVKRPVLDMFIKCGRMEMA 149
G +++M I + E AC ++D+ + G +E A
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYAC----MVDLLGRSGHLEEA 394
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 173/706 (24%), Positives = 282/706 (39%), Gaps = 204/706 (28%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELC 56
V L+ M + + T+A + + +E G+QVHA ++ VC +C
Sbjct: 189 VIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALIC 248
Query: 57 AFL---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------ 101
+L +F+ M R+ +W M+G Y +G+Y E +F+ + GV
Sbjct: 249 MYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTV 308
Query: 102 ----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
K CS+ ++ K ++ ++ +E ++ ++ + KC ++ A F D
Sbjct: 309 FCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368
Query: 158 FS-----------------------NLSLLKHGKEIHPHHL--------KKDDLESDL-- 184
+ +L + + P+H K L S L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428
Query: 185 -----------LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
V +L+D Y K + + F I K +V+W+AML
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAML----------- 477
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHH 292
TG Q D E A+E F ++++ ++PN + S V+ AC+ + GK+IH ++
Sbjct: 478 -TGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536
Query: 293 IQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK------ 331
+ V AL+++ + + V WNS+I YG+ G +K
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQ 596
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
EG +YF +M K+Y+++ E Y CMVDL +RA
Sbjct: 597 IMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRA 656
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LS 406
G FD ++ + MPF S C N ++ + AA L L+P LS
Sbjct: 657 GMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLS 716
Query: 407 S-----------------------------------GKVHSFIAGDTSHSLVHKISEKLM 431
+ ++ SF+AGD SH + KL
Sbjct: 717 NIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLE 776
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L ++K +GY K HSE+LA+A+GLI+ PG+P+++ KNLR
Sbjct: 777 ELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLR 836
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CGDCH+ + +S E ER +I+ D+ RFHHF G CSCG YW
Sbjct: 837 ICGDCHNVIELISLIE----ERTLIVRDSNRFHHFKGGVCSCGGYW 878
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H LK LE D+ V SL+D Y K + F ++ K++VSW ++L+GYA
Sbjct: 123 GRQVHCQSLKSGFLE-DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYA 181
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G +E+ + ++M + PN + + VL A A + G ++H
Sbjct: 182 RNGLNDEV------------IHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229
Query: 287 YVLRHHIQLSTGVGIALISI----QGLGTG-----------SFVWNSLIDMYGRCGAIQK 331
++++ + +T V ALI + + +G S WN +I Y G
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL- 288
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG++ F M+ ++ + +C + L ++ + LNF K++
Sbjct: 289 -EGFQMFHRMRLA-GVKLSRTVFCTALKLCSQQRE----LNFTKQL 328
>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Brachypodium distachyon]
Length = 642
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 160/579 (27%), Positives = 233/579 (40%), Gaps = 177/579 (30%)
Query: 59 LGMFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
L +F MP+RNV SWT+++ + N G +E + E++ V +
Sbjct: 127 LELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLV------------EMRRDGVAANS 174
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
Y + + G V + IK G
Sbjct: 175 YTFSSVLGACGTPGVLAAMHADIIKVG--------------------------------- 201
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+SD+ V +SL+D Y K L F ++ LV WN+++AG+A
Sbjct: 202 --LDSDVFVRSSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFA----------- 248
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q GDG A+E F RM ++ N +L+ VL AC + ++G+++H +VL++ L
Sbjct: 249 -QSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVHAHVLKYDRDLIL 307
Query: 298 GVGI--------------ALIS-------------IQGLGTGSFVWNSL--IDMYGRCGA 328
+ AL S I GL +L D+ G
Sbjct: 308 HNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGP 367
Query: 329 IQKN-----------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
N +GW YF M K + ++P E CMVDLL RAG+ D+ +
Sbjct: 368 TPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAM 427
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------ 409
F+ +M FEP S C N +A +AA + +LEP G
Sbjct: 428 KFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLR 487
Query: 410 -------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
VH FIAG+ SH +I ++L RL K
Sbjct: 488 QWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAK 547
Query: 439 KIGYMKR----IPACG----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+GY+ + + G HSEKLA+AFG +++ G P+R++KNLR+CGDCH+
Sbjct: 548 DLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHA 607
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VSK E + II+ D RFHHF G CSCGDYW
Sbjct: 608 FAKLVSKTEG----KAIIIRDPVRFHHFQHGVCSCGDYW 642
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 30/151 (19%)
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L V+NSL+ YAK L A F + Q+++VSW ++A A G
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALA-----------NAPGRK 155
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ AL F M + + N+ + S VL AC G + H A
Sbjct: 156 KEALRFLVEMRRDGVAANSYTFSSVLGACGT----------PGVLAAMH---------AD 196
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
I GL + FV +SLID Y + G + G
Sbjct: 197 IIKVGLDSDVFVRSSLIDAYMKLGDLDSGRG 227
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 208/474 (43%), Gaps = 136/474 (28%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+E+H H +++ V +L+D YAK ++ A F+ + ++++VSW+AM+ YA
Sbjct: 199 REVHAHAIRRG-YALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYA- 256
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ A+E F M+ +D + PN+I++ VL ACA V GK +H
Sbjct: 257 -----------KNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLH 305
Query: 286 GYVLRHHIQLSTGVGIALISI----QGLGTGSFV------------WNSLIDMYGRCG-- 327
Y+LR V AL+++ L G + WNSLI YG G
Sbjct: 306 AYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFG 365
Query: 328 --AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
A+Q NEG FE M EY + P E Y C
Sbjct: 366 PEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMV-EYGVTPRAEHYAC 424
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS 406
MVDLL RAGQ D+ + ++ M EPS C + + AE A HLF+LEP +
Sbjct: 425 MVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRN 484
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
+G K+HSF + D + V
Sbjct: 485 AGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPV 544
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
++ + +++K GY+ K GHSEKLA+AFGLI+T G
Sbjct: 545 EQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEV 604
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+ KNLR+C DCHS TK++SK EREI++ D RFHHF DG CSCGDYW
Sbjct: 605 IRITKNLRLCEDCHSVTKFISKFT----EREIVVRDVNRFHHFRDGVCSCGDYW 654
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/587 (26%), Positives = 244/587 (41%), Gaps = 179/587 (30%)
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMA- 149
+ + AC L+ R K V++YMI+ FE + V VL M +KCG M EM
Sbjct: 122 DALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPE 181
Query: 150 ---------------SGEFEE---------KDFSN---------------LSLLKHGKEI 170
+G F E K+F++ L L++ GK+I
Sbjct: 182 KDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQI 241
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H LK+ + D V+ +L+D Y+KC ++ AHC F ++ +K V WN+++A YAL G+
Sbjct: 242 HSCALKRG-VGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGY 300
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE AL + M + + ++S V+ CA++ + K+ H ++R
Sbjct: 301 SEE------------ALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVR 348
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK---- 331
H AL+ + WN+LI YG G Q+
Sbjct: 349 HGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEM 408
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GW F MK+++ ++P Y CM++LL
Sbjct: 409 FEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLG 468
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL------- 405
R D+ ++ PF+P++ C N ++ + AA L+ +EP
Sbjct: 469 RESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIV 528
Query: 406 ------SSGKV------------------------------HSFIAGDTSHSLVHKISEK 429
SSGK+ ++F+ GD SHS +I +K
Sbjct: 529 LLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQK 588
Query: 430 LMRLYSEIKKIGYMKR----IPACG---------HSEKLALAFGLISTSPGSPLRVIKNL 476
+ L EI K GY + +P HSEKLA+AFGLI+T +PL++ +
Sbjct: 589 VDNLMVEICKHGYAEENETLLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGH 648
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCHS K ++ REI++ D RFHHF +G+CSCGDYW
Sbjct: 649 RVCGDCHSAIKLIAMVTG----REIVVRDASRFHHFRNGSCSCGDYW 691
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 167/673 (24%), Positives = 268/673 (39%), Gaps = 211/673 (31%)
Query: 43 QVHAHLIVCGVELCAFLGM------------------FEKMPERNVFSWTSMMGMYNVLG 84
QV+ LIV G+ C FL + F ++ E ++ W +++ Y
Sbjct: 5 QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64
Query: 85 YYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
+ + ++ + V+ KAC +GK ++ F N V+
Sbjct: 65 IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124
Query: 135 PVLDMFIKCGRMEMA-------------------SGEFEEKD------------------ 157
++ M+ K G++ A SG + D
Sbjct: 125 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 184
Query: 158 -----------FSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHC 205
++N+ L GK IH K + E D+++ SL YAK ++VA
Sbjct: 185 DWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVI--SLTTMYAKRGLVEVARF 242
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F+++++ +L+ WNAM++GYA G+ GE A++ F MI +++ ++I++
Sbjct: 243 FFNRMEKPNLILWNAMISGYANNGY------------GEEAIKLFREMITKNIRVDSITM 290
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF----- 314
+ A AQV +L + + GY+ + + T V LI + L F
Sbjct: 291 RSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVAD 350
Query: 315 ----VWNSLIDMYGRCGAIQK---------------------------------NEGWRY 337
+W+ +I YG G Q+ EGW
Sbjct: 351 KDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWEL 410
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN--- 388
F +M ++ +EP + Y C+VDLL RAG + +F+ MP +P + C
Sbjct: 411 FHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHR 469
Query: 389 -PDIAEHAARHLFELEPLSSG--------------------------------------- 408
+ E AA LF L+P ++G
Sbjct: 470 KVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSI 529
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CG 450
+ +F GD SH +I E+L RL +K GY+ + + C
Sbjct: 530 EINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCH 589
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSE+LA+A+G+IST+PG+ LR+ KNLR C +CHS K +SK +REII+ D RFH
Sbjct: 590 HSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLV----DREIIIRDAKRFH 645
Query: 511 HFVDGACSCGDYW 523
HF DG CSCGD+W
Sbjct: 646 HFKDGVCSCGDFW 658
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 159/594 (26%), Positives = 237/594 (39%), Gaps = 180/594 (30%)
Query: 93 FYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS-- 150
F L V A +EL++ ++G + I F + + ++ +F KCG +E+A
Sbjct: 29 FDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLL 88
Query: 151 -GEFEEKDFSNLS---------------------LLKHGKEIHPHHLK------------ 176
GE +KD + + LL G+ + +
Sbjct: 89 FGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHS 148
Query: 177 -----------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K + S V+ +L Y + + A F + +K L SWNAM
Sbjct: 149 YLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAM---- 204
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I+G TQ G + A+ F M + ++ PN ++++ +L+ACAQ+ LG+ +H
Sbjct: 205 --------ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVH 256
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAI 329
+ + + + V ALI + GS WN++I YG G
Sbjct: 257 SLIKSNRFESNVYVSTALIDMYA-KCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHG 315
Query: 330 QK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
Q+ EG F M ++ EP E Y C
Sbjct: 316 QEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYAC 375
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-- 404
MVD+L RAGQ L F+K MP EP C + ++A A+ LFEL+P
Sbjct: 376 MVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPEN 435
Query: 405 ----------------------------------------LSSGKV-HSFIAGDTSHSLV 423
+ G+V H F +GD SH
Sbjct: 436 IGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQS 495
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
I +L +L ++ + G+ K + HSEKLA+AFGLIST PG+
Sbjct: 496 KAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAE 555
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+IKNLR+C DCH+ TK++SK K R I++ D RFHHF DG CSCGDYW
Sbjct: 556 IRIIKNLRVCLDCHNWTKFLSKITK----RVIVVRDANRFHHFKDGLCSCGDYW 605
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 13/138 (9%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++ E+ + SW +M+ G + ++LF + V AC+++
Sbjct: 189 LFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGA 248
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHG 167
+G+ V+ + S +FE N V ++DM+ KCG + +A F+ EK+ + + G
Sbjct: 249 LSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISG 308
Query: 168 KEIHPHHLKKDDLESDLL 185
+H H + L D+L
Sbjct: 309 YGLHGHGQEALKLFYDML 326
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA-----------HLIVCGVELCA 57
L Q+M N + VT I C ++ L LG VH+ ++ +++ A
Sbjct: 220 LFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYA 279
Query: 58 FLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------- 103
G +F+ MPE+N +W +M+ Y + G+ +E + LFY ++ V
Sbjct: 280 KCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLS 339
Query: 104 ---ACSELKDHRVGKDVYDYMI-SIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + G ++ M+ FE A ++D+ + G+++ A
Sbjct: 340 VLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389
>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49710-like [Cucumis sativus]
Length = 720
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 191/436 (43%), Gaps = 140/436 (32%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
SN+S G+++H LK D + + VNN+L+ Y+KC L+ A F + + + VS+
Sbjct: 354 SNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSY 413
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N+M+AGYA Q+G G +L F RM++ D P I+ VLAACA
Sbjct: 414 NSMIAGYA------------QHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHT--- 458
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
GR +G YF
Sbjct: 459 ---------------------------------------------GRV-----EDGKIYF 468
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----N 388
MMK+++ +EP + CM+DLL RAG+ + ++ +PF+P + C N
Sbjct: 469 NMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGN 528
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++A AA L +L+PL++
Sbjct: 529 VELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIE 588
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG--------------- 450
++H F+A DT H ++ KI E L + +IKK+GY + +
Sbjct: 589 VNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELR 648
Query: 451 ---HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
HSEKLA++FGL+ST G P+ V KNLR+C DCH+ KY+S+ K REI + D++
Sbjct: 649 LGHHSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVK----REITVRDSH 704
Query: 508 RFHHFVDGACSCGDYW 523
RFH F DG CSCG YW
Sbjct: 705 RFHCFKDGQCSCGGYW 720
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 55/242 (22%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
K C +D R GK ++ I + + L ++ KC R+ A F+
Sbjct: 16 KTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD-------- 67
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
H H + ++ N+L+ YAK Y++VAH F ++ Q VS+N ++
Sbjct: 68 --------HTH-------DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLI 112
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
A YA + GD + A + F M + + + +LSG++ AC G L +
Sbjct: 113 AAYA------------RRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVG--LIR 158
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H AL + GL + V N+LI Y + G ++ E R F +
Sbjct: 159 QLH----------------ALSVVTGLDSYVSVGNALITSYSKNGFLK--EARRIFHWLS 200
Query: 343 KE 344
++
Sbjct: 201 ED 202
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 170/621 (27%), Positives = 258/621 (41%), Gaps = 195/621 (31%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMG 78
NL G++VHA+ I G++ +G FE MPE+++ SWT+++
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426
Query: 79 MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138
GY + +L D + + ++ E K V
Sbjct: 427 -----GYAQNECHL-----------------------DALNLLRKVQLE-----KMDVDP 453
Query: 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
M I G + +A S L K KEIH + LK +D+L+ N++++ Y +
Sbjct: 454 MMI--GSILLAC--------SGLKSEKLIKEIHGYVLKGG--LADILIQNAIVNVYGELA 501
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
+ A F I K +VSW +M IT G ALE F+ +I+T++
Sbjct: 502 LVDYARHVFESINSKDIVSWTSM------------ITCCVHNGLAIEALELFNSLIETNI 549
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-LGTGS---- 313
+P+ I+L VL A A + K GKEIHG+++R L + +L+ + GT
Sbjct: 550 EPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARN 609
Query: 314 ----------FVWNSLIDMYGR--CGAIQKN----------------------------- 332
+W S+I+ G CG +
Sbjct: 610 IFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGL 669
Query: 333 --EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC--- 387
EG ++FE+MK EY +EP E Y C+VDLLAR+ ++ +F++ MP EPS+ C
Sbjct: 670 VVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALL 729
Query: 388 -------NPDIAEHAARHLFELEPLSSG-------------------------------- 408
N D+ E AA+ L +L +SG
Sbjct: 730 GACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKK 789
Query: 409 -----------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYMKRIPAC------- 449
K+H+F+A D SH + I KL + +K K GY +
Sbjct: 790 KPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEE 849
Query: 450 -------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
GHSE+LAL +GL+ TS G+ LR+ KNLR+C DCH+ K S+ +R ++
Sbjct: 850 EKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEIS----QRTLV 905
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFHHF G CSCGD+W
Sbjct: 906 VRDASRFHHFERGLCSCGDFW 926
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 150/384 (39%), Gaps = 108/384 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELC-AFLGMFEK-------------- 64
T+ + + C LG ++H + CG V +C A + M+ K
Sbjct: 150 TFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSG 209
Query: 65 -MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
M + + SW S++ + G E ++LF + + GV +AC ++
Sbjct: 210 LMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKI 269
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------------- 160
G+ ++ ++ + V ++ M+ CG+ME A F+ F +
Sbjct: 270 GRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQ 329
Query: 161 -----------------------LSLLK------------HGKEIHPHHLKKDDLESDLL 185
+S+L G E+H + +K ++S++
Sbjct: 330 NDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHG-IDSNMH 388
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ NSL+D Y KC +K F + +K L+SW ++AGYA Q
Sbjct: 389 IGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYA------------QNECHLD 436
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL ++ M + + + +L AC+ +K KL KEIHGYVL+ G+A I
Sbjct: 437 ALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKG--------GLADIL 488
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
IQ N+++++YG +
Sbjct: 489 IQ---------NAIVNVYGELALV 503
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 99/455 (21%), Positives = 168/455 (36%), Gaps = 131/455 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV--------------------CGVELCAFLGMFE 63
Y+ + C L G Q+HAH + CG A + +F+
Sbjct: 48 AYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDA-VKVFD 106
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
KM ER +F+W +M+G G Y E + L+ + GV KAC K+ R+
Sbjct: 107 KMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRL 166
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G +++ + +KCG G F
Sbjct: 167 GCEIHG-------------------VAVKCGY-----GGF-------------------- 182
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK--IKQKHLVSWNAMLAGYALGGFR 231
+ V N+L+ YAKC L A F +++ VSWN++++ +
Sbjct: 183 ----------VFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV----- 227
Query: 232 EEITGFTQYGDGET--ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
G+GE+ AL F RM + ++ NT + L AC K+G+ IH +L
Sbjct: 228 ---------GEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVIL 278
Query: 290 R-HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+ +H T +V N+LI MY CG ++ E R F+ M +
Sbjct: 279 KSNHF-----------------TDVYVSNALIAMYANCGQMEDAE--RVFKSM-----LF 314
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSG 408
+ ++ + + + D +N + M + S +P + A L+
Sbjct: 315 KDCVSWNTLLSGMVQNDMYSDAINHFQDM--QDSGQKPDQVSVLNMIAASGRSANLLAGM 372
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+VH++ S +H I L+ +Y + + YM
Sbjct: 373 EVHAYAIKHGIDSNMH-IGNSLIDMYGKCCCVKYM 406
>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 904
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 183/721 (25%), Positives = 278/721 (38%), Gaps = 225/721 (31%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCA 57
+PD+ T + L C K + GIQ+H +I CG CA
Sbjct: 130 SPDKYTFPFGL--SVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCA 187
Query: 58 FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-DEGVY----------KACS 106
+F++M ERNV SWTSM+ Y + ++ V+LF+ ++ DE V AC+
Sbjct: 188 -RKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACA 246
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+L+D G+ VYD++ E N + ++DM++KC +++A F+E SNL L
Sbjct: 247 KLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNA 306
Query: 167 ------------------------------------------------GKEIHPHHLKKD 178
GK H + L+ +
Sbjct: 307 MASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLR-N 365
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------- 229
ES + N+L+D Y KC A F ++ K +V+WN+++AGY G
Sbjct: 366 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETF 425
Query: 230 ----------FREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGF 278
+ I+ Q E A+E F M Q + + +++ + +AC +
Sbjct: 426 NTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGAL 485
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI-------------------------------- 306
L K I+ Y+ ++ IQL +G L+ +
Sbjct: 486 DLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 545
Query: 307 ------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
QGL V+ + G +Q +G F M+K + +
Sbjct: 546 AMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQ--QGKEIFNSMEKLHGVS 603
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P Y CMVDLL RAG ++ L +K MP EP+ C N ++A AA
Sbjct: 604 PEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEK 663
Query: 399 LFELEP--------LSS-----------------------------------GKVHSFIA 415
+ L P LS+ GK H F +
Sbjct: 664 IQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTS 723
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGL 461
GD SH + KI L L +G++ + HSEKLA+AFGL
Sbjct: 724 GDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGL 783
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
IS++ G+ +R++KNLR+C CHS K+ SK REII+ DN RFH G CSC D
Sbjct: 784 ISSNKGTTIRIVKNLRVCSYCHSFAKFASKV----YNREIILRDNNRFHFIRQGKCSCSD 839
Query: 522 Y 522
+
Sbjct: 840 F 840
>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 953
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/480 (30%), Positives = 205/480 (42%), Gaps = 132/480 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L L+ GKE+H + ++ LE DL V S++ Y C L F ++ LVSW
Sbjct: 491 SKLKSLRLGKEVHGF-IIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSW 549
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N + ITG Q G E AL F +M+ +QP IS+ V AC+ +
Sbjct: 550 NTV------------ITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSL 597
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
+LG+E H Y L+H ++ + + ++I + GL S WN++I Y
Sbjct: 598 RLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGY 657
Query: 324 GRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPA 350
G G ++ +EG RY + MK + ++P
Sbjct: 658 GMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPN 717
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLF 400
++ Y C++D+L RAGQ D+ L +M EP S C N ++ E A LF
Sbjct: 718 LKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLF 777
Query: 401 ELEP--------LSS-----------------------------------GKVHSFIAGD 417
LEP LS+ GKV SF+ G+
Sbjct: 778 VLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGE 837
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLIS 463
+I L +I K+GY + GHSEKLA+ +GLI
Sbjct: 838 RFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIK 897
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TS G+ LRV KNLR+C DCH+ K +SK EREI++ DN RFHHF G CSCGDYW
Sbjct: 898 TSEGTTLRVYKNLRICVDCHNAAKLISKV----MEREIVVRDNKRFHHFNKGFCSCGDYW 953
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 159/361 (44%), Gaps = 93/361 (25%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG--------- 60
PD T+ + + C ++++ +G+ VH ++ G+ L +F G
Sbjct: 185 PD--NFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDAL 242
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLG----YYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
+F+ MPERN+ SW SM+ +++ G + ++ + +L C+ ++ VGK
Sbjct: 243 KLFDIMPERNLVSWNSMIRVFSDNGDDGAFMPDVATVVTVL------PVCAREREIGVGK 296
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCG------------------------------- 144
V+ + + + + V ++DM+ K G
Sbjct: 297 GVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEG 356
Query: 145 ---------RMEMASGEFEEKDFSNL----------SLLKHGKEIHPHHLKKDDLESDLL 185
R +A E + D + S+L KE+H + LK++ + +LL
Sbjct: 357 DIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELL 416
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
N + + YAKC L A F I+ K L SWNA++ GYA Q D
Sbjct: 417 AN-AFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYA------------QSSDPRL 463
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+L+ +M + + P+ ++ +L+AC+++K +LGKE+HG+++R+ ++ V ++++S
Sbjct: 464 SLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLS 523
Query: 306 I 306
+
Sbjct: 524 L 524
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 79/182 (43%), Gaps = 32/182 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
++ G++IH L SD ++ ++ YA C + F ++ K+L WNA+++
Sbjct: 100 IEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVIS 159
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGK 282
Y+ E+ LE F +MI +T + P+ + V+ ACA + +G
Sbjct: 160 SYSRNELYHEV------------LEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV-----------------WNSLIDMYGR 325
+HG V++ + VG AL+S GT FV WNS+I ++
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSF--YGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD 265
Query: 326 CG 327
G
Sbjct: 266 NG 267
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 35/186 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PD TV L C KL +L LG +VH +I CG ELC
Sbjct: 478 PDNFTVCSLL--SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG-ELCTV 534
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F+ M + ++ SW +++ + G+ E + LF ++ G V+ ACS L
Sbjct: 535 QVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLL 594
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLK 165
R+G++ + Y + E NA + ++DM+ K G + +S F +EK ++ + +
Sbjct: 595 PSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMI 654
Query: 166 HGKEIH 171
G +H
Sbjct: 655 MGYGMH 660
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/374 (20%), Positives = 139/374 (37%), Gaps = 99/374 (26%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVEL------CAFL--------------GMFEKM 65
L+ Q K ++E+G ++H HL+ L C + F+ +
Sbjct: 88 GLLLQASGKRKDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDAL 146
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVG 114
+N+F W +++ Y+ Y E++ +F +I + V KAC+ + D +G
Sbjct: 147 RSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIG 206
Query: 115 KDVYDYMISIK-----FEGNACVK--------RPVLDMFIKCGRMEMAS----------- 150
V+ ++ F GNA V L +F + S
Sbjct: 207 LAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDN 266
Query: 151 ---GEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
G F + +++L GK +H +K L+ +L+VNN+LMD Y+K
Sbjct: 267 GDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLS-LDKELVVNNALMDMYSKWG 325
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI--QT 256
+ + F K++VSWN M + GF+ GD + +M+
Sbjct: 326 CIIDSQMIFKLNNNKNVVSWNTM------------VGGFSAEGDIHGTFDLLRQMLAGSE 373
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
D++ + +++ + C KE+H Y L+ Q +
Sbjct: 374 DVKADEVTILNAVPVCFDESVLPSLKELHCYSLK----------------QEFVYDELLA 417
Query: 317 NSLIDMYGRCGAIQ 330
N+ + Y +CG++
Sbjct: 418 NAFVASYAKCGSLS 431
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 168/671 (25%), Positives = 277/671 (41%), Gaps = 194/671 (28%)
Query: 16 TNPDE---------CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA---FLGMFE 63
+PDE C T +L L L +V A L+ C L + L +F
Sbjct: 25 ASPDESHFISLIHTCKDTVSLRLVHAHILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFR 84
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
ERN F + +++ +E V F L++ GV K+ S+L +
Sbjct: 85 NSEERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWL 144
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G+ ++ + + ++ V+ ++DM+ K G++ A FEE P
Sbjct: 145 GRALHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEET---------------PD 189
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---- 229
+KK+ + L+ N L++ Y + + +++A F + +++ SW+ ++ GY G
Sbjct: 190 RIKKESI----LLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNR 245
Query: 230 ---------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ I GF+Q GD ETA+ + M++ ++PN +++ VL+AC++
Sbjct: 246 AKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSK 305
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSL 319
G IHGY+L + I+L +G +L+ + + + V W ++
Sbjct: 306 SGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAM 365
Query: 320 IDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKKEYN 346
I + G AIQ + G +F+ M+ +Y
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYA 425
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA---------- 396
+EP ++ Y +VDLL RAG+ D+ ++ MP NPD+ AA
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPI--------NPDLTTWAALYRACKAHKS 477
Query: 397 -------RHLFELEPLSSG----------------------------------------- 408
++L EL+P G
Sbjct: 478 NRTDIVLQNLLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIEL 537
Query: 409 --KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
+++ F A D +H +I KL + S + GY+ K HS
Sbjct: 538 DCQLNKFAADDYTHKQAQEIRLKLEGIISLAIERGYIPGADWSIHDIEEEEKESVTGIHS 597
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLAL GL+ T+PG+ +R+IKNLR+CGDCHS KYVSK +R I++ D +FHHF
Sbjct: 598 EKLALTLGLLRTAPGTTIRIIKNLRICGDCHSLMKYVSKIS----QRGILLRDARQFHHF 653
Query: 513 VDGACSCGDYW 523
DG+CSCGDYW
Sbjct: 654 KDGSCSCGDYW 664
>gi|218198170|gb|EEC80597.1| hypothetical protein OsI_22944 [Oryza sativa Indica Group]
Length = 563
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 227/512 (44%), Gaps = 122/512 (23%)
Query: 59 LGMFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEGVYK----------ACSE 107
L +F+ MP +NV SWT+++ + N G E+ + LF ++ +GV ACS
Sbjct: 127 LRLFDGMPHKNVVSWTTVVAALANARGRKEDALRLFVAMLRDGVAPNMYTFSSILGACST 186
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF-IKCGRMEMASGEFEE--KDFSNLSLL 164
RV ++ ++ + R + + G + + G + + L L
Sbjct: 187 ---PRVLAAMHGSIVKVGIRAERGWCRGDRAFYEDEGGWVLVQPGTLTSVLRACTGLVTL 243
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+ G+++H H LK D DL+++N+L+D Y KC L+ A F ++ Q+ ++SW+ M
Sbjct: 244 EVGRQVHAHVLKYD---KDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISWSTM--- 297
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
I+G Q G AL+ F M +P
Sbjct: 298 ---------ISGLAQNGRSIEALKVFDMMKSEGPRP------------------------ 324
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+HI T VG+ ++ A +GW YF M+K
Sbjct: 325 ------NHI---TMVGV--------------------LFACSHAGLVEDGWYYFSSMEKL 355
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEH 394
+ ++P E CMVDLL RAG+ DD + F+ +M F+P S C N D+A +
Sbjct: 356 FGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKNADLAAY 415
Query: 395 AARHLFELEPLSSGKVHSF-------IAGDTSHSLVH--KISEKLMRLYSEIKKIGYMKR 445
AA+ + LEP S+ + D S + I ++L RL+S + +GY +
Sbjct: 416 AAKEILRLEPDDQDAEKSWKMMRDRGVKKDPGRSWIELESIIQELSRLFSRVTNLGYTPQ 475
Query: 446 IPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
HSEKLA+AFG ++ G P+R++KNLR+CGDCH+ K VSK
Sbjct: 476 TEFVLQDLATEQKEDLLKYHSEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSK 535
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+E + II+ D RFHHF DG CSC DYW
Sbjct: 536 SEG----KVIIIRDPVRFHHFQDGVCSCNDYW 563
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C L LE+G QVHAH++ +L C L +F +MP+
Sbjct: 229 TLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILHNALLDMYCKCGSLQDADALFGRMPQ 288
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
R+V SW++M+ G E + +F ++ EG
Sbjct: 289 RDVISWSTMISGLAQNGRSIEALKVFDMMKSEG 321
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/481 (27%), Positives = 206/481 (42%), Gaps = 132/481 (27%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F+ + ++ G E+H ++ D+ V +SL+D YA C + F + + +
Sbjct: 183 FAEGADVRRGMELH-GFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WN+MLAG A Q G + AL F RM+ + ++P ++ S ++ AC +
Sbjct: 242 WNSMLAGCA------------QNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLAS 289
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQ-GLGTGSFV--------------WNSLIDM 322
LGK++H YV+R + + +LI + G S W ++I
Sbjct: 290 LLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMG 349
Query: 323 YGRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEP 349
+ G ++ ++GW+YF M Y + P
Sbjct: 350 HALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVP 409
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHL 399
++E + + D L R G+ ++ NF+ M +P+++ C N +AE A+ +
Sbjct: 410 SLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKI 469
Query: 400 FELEPLSSG-------------------------------------------KVHSFIAG 416
F+LEP S G K H F+A
Sbjct: 470 FDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAH 529
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
D SH +I + L ++ + GY+ K CGHSEKLA+ FG+I
Sbjct: 530 DKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGII 589
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
ST PG+ +RV+KNLR+C DCH+ TK++SK REI+M D RFHHF DG CSCGD+
Sbjct: 590 STPPGTTIRVMKNLRVCVDCHTVTKFISKIVG----REIVMRDANRFHHFKDGICSCGDF 645
Query: 523 W 523
W
Sbjct: 646 W 646
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 158/597 (26%), Positives = 236/597 (39%), Gaps = 202/597 (33%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------- 60
D P++ T+ F+ L + +G QVHA + G F+G
Sbjct: 102 DSIQPND--FTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLT 159
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
MF++MPERN+ +W + + + G Y++ + F ++ + G
Sbjct: 160 EEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAF--------------IEARKEGI 205
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
+ D+M+S +AC + LS+L+ GK +H +
Sbjct: 206 EPTDFMVSSVL--SAC---------------------------AGLSVLEVGKSVHTLAV 236
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K + ++ V ++L+D Y KC ++ A F ++ +++LV+WNAM I
Sbjct: 237 KAC-VVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAM------------IG 283
Query: 236 GFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
G+ G + A+ F M + PN ++ VL+AC+
Sbjct: 284 GYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACS-------------------- 323
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
R G++ N G FE M+ Y +EP E
Sbjct: 324 -------------------------------RAGSV--NVGMEIFESMRGRYGIEPGAEH 350
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELE 403
Y C+VDLL RAG + F+KKMP P+ S ++ + AA +LFEL+
Sbjct: 351 YACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELD 410
Query: 404 PLSSGK-------------------------------------------VHSFIAGDTSH 420
PL SG VH F A DTSH
Sbjct: 411 PLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSH 470
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I L +L E++ GY+ K + HSEK+ALAFGLIS
Sbjct: 471 ERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPA 530
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+R+ KNLR+CGDCHS K++S REII+ DN FH F D CSC DYW
Sbjct: 531 GVPIRITKNLRICGDCHSAIKFISGIVG----REIIVRDNNLFHRFRDNQCSCRDYW 583
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 82/219 (37%), Gaps = 38/219 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ H +K D + N L++ Y+K A S + +V+W A++AG
Sbjct: 25 GRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS- 83
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q G +AL FS M + +QPN + A ++ +GK++H
Sbjct: 84 -----------VQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHA 132
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
++ G + FV S DMY + G + E + F+ M
Sbjct: 133 LAVK----------------AGQISDVFVGCSAFDMYSKAGLTE--EARKMFDEMP---- 170
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFM---KKMPFEPS 382
E + + + G++DD L +K EP+
Sbjct: 171 -ERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPT 208
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 153/618 (24%), Positives = 246/618 (39%), Gaps = 199/618 (32%)
Query: 35 LNNLELGIQVHAHLIVCGVELCAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90
+E V + ++ G+ C + G+F+ M +R+ +WT+M+ G E +
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263
Query: 91 NLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140
++F + EGV AC L GK ++ Y+ +E N V ++DM+
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMY 323
Query: 141 IKCGRMEMASGEFEE---------------------------------------KDFS-- 159
KC + +A F DF+
Sbjct: 324 SKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLG 383
Query: 160 -------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
NL+ L+ G + H L L + V+N+L+ Y KC ++ AH F ++
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSG-LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
VSW A++ GYA Q+G + ++ F +M+ ++P+ ++ GVL+AC
Sbjct: 443 HDQVSWTALVTGYA------------QFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSAC 490
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+ R G ++K
Sbjct: 491 S---------------------------------------------------RAGLVEK- 498
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEP 386
G YF+ M+K++++ P + Y CM+DL +R+G+F + F+K+MP P +
Sbjct: 499 -GCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSS 557
Query: 387 C----NPDIAEHAARHLFELEPLSSG---------------------------------- 408
C N +I + AA +L E +P +
Sbjct: 558 CRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEP 617
Query: 409 ---------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC---------- 449
KVH F A D SH +I EKL L S++ + GY + +
Sbjct: 618 GCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKV 677
Query: 450 ----GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLA+AFGLI P+R++KNLR+C DCH+ TK++SK R+I++ D
Sbjct: 678 HMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITG----RDILVRD 733
Query: 506 NYRFHHFVDGACSCGDYW 523
RFH F DG CSCGD+W
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 62/285 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELK 109
+F MPER+ S+ +++ ++ G V L+ L+ E + S L
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
D +G V+ ++ + F A V P++DM+ K G + A F+E +
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT--------- 211
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+++ N+L+ +C+ ++ A F + + ++W M
Sbjct: 212 --------------VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTM-------- 249
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+TG TQ G AL+ F RM + + + +L AC + + GK+IH Y+
Sbjct: 250 ----VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYIT 305
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
R + + FV ++L+DMY +C +I+ E
Sbjct: 306 RTWYEDNV----------------FVGSALVDMYSKCRSIRLAEA 334
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
K G+ + + + +L N+L+ A R + F+ + ++ VS+NA+
Sbjct: 60 KSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNAL--- 116
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKE 283
ITGF+ G +++ + +++ + ++P I+LS ++ + + LG
Sbjct: 117 ---------ITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H VLR G G +FV + L+DMY + G I+ + R F+ M+
Sbjct: 168 VHCQVLR----------------LGFGAYAFVGSPLVDMYAKMGLIR--DARRVFQEMEA 209
Query: 344 E 344
+
Sbjct: 210 K 210
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/496 (28%), Positives = 205/496 (41%), Gaps = 150/496 (30%)
Query: 162 SLLKHGKEIHPH-------------------HLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
+L+KHG E PH + + + DL+ +++ AKC +
Sbjct: 135 ALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGF 194
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262
A F + Q+ VSWNAM+AGYA Q G AL F M ++ N
Sbjct: 195 ARNLFDSMPQRDFVSWNAMIAGYA------------QRGQSREALNLFKLMQMDGVKVNE 242
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------QGLGT--- 311
+S+ V+ AC + GK H Y+ ++ IQ++ +G AL+ + + L
Sbjct: 243 VSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWE 302
Query: 312 ----GSFVWNSLIDMYGRCGAIQK---------------------------------NEG 334
+ W++ I G QK +EG
Sbjct: 303 MNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEG 362
Query: 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC- 387
+F+ MK+++ +EP +E Y CMVDL RAG+ ++ LNF+ MP +P + C
Sbjct: 363 RSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACR 422
Query: 388 ---NPDIAEHAARHLFELE--------PLSS----------------------------- 407
N ++ E A+R L E+E LS+
Sbjct: 423 MYKNMELGEFASRKLIEVEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGC 482
Query: 408 ------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIP 447
G+VH F +GD SH I + +K GY+ K
Sbjct: 483 SVMEVNGEVHEFFSGDKSHPSYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDA 542
Query: 448 ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
C HSEK+A+AFGL S G P+R++KNLR+C DCH +K +SK EREII+ D
Sbjct: 543 LCKHSEKMAIAFGLFSLKEGLPIRIVKNLRICWDCHDVSKMISKI----FEREIIVRDRN 598
Query: 508 RFHHFVDGACSCGDYW 523
RFHHF DG CSC D+W
Sbjct: 599 RFHHFKDGECSCKDFW 614
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 39/173 (22%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
L MD +E V+ + C L L+ G HA++ +++ LG
Sbjct: 232 LMQMDGVKVNE--VSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFK 289
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------V 101
+F +M E+NV++W++ +G + GY ++ + LF + EG V
Sbjct: 290 CGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISV 349
Query: 102 YKACSELKDHRVGKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMA 149
K CS + G+ +D M I + E C ++D++ + GR+E A
Sbjct: 350 LKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGC----MVDLYGRAGRLEEA 398
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 146/536 (27%), Positives = 218/536 (40%), Gaps = 154/536 (28%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+ ++L H G V+ + FE + V+ ++ M+ + G ++
Sbjct: 119 RTSAQLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDAC------------- 165
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
H + E DL+ +++ AK + A F K+ K ++WNAM+
Sbjct: 166 ----------HRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMI 215
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GY Q G AL F+ M + ++ N +S+ VL+AC+ + G+
Sbjct: 216 SGY------------VQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGR 263
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQ--------------GLGTGS-FVWNSLIDMYGRCG 327
H Y+ R+ ++++ +G ALI + G+ + + W+S I G
Sbjct: 264 WAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNG 323
Query: 328 A---------------IQKNE------------------GWRYFEMMKKEYNMEPAMEQY 354
A +Q NE G ++FE M K Y +EP +E Y
Sbjct: 324 AGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHY 383
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDL RAG D+ LNF+ MP P C N ++ E A+R + ELE
Sbjct: 384 GCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEA 443
Query: 405 LS-------------------------------------------SGKVHSFIAGDTSHS 421
+ G+VH F GD SH
Sbjct: 444 KNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHP 503
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+I L + +K GY+ K C HSEK+A+AFGLIS SP
Sbjct: 504 RYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPD 563
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R++KNLR+C DCH TK +SKA REI++ D RFHHF DG CSC YW
Sbjct: 564 VPIRIVKNLRVCWDCHDATKMISKA----FNREIVVRDRNRFHHFRDGECSCKGYW 615
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 53 VELCAFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----- 100
V CA +G +F+KM ++ +W +M+ Y G E ++LF L+ EG
Sbjct: 184 VSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNE 243
Query: 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS L G+ + Y+ K + ++DM+ KCG M A
Sbjct: 244 VSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKA 297
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 152/581 (26%), Positives = 240/581 (41%), Gaps = 187/581 (32%)
Query: 61 MFEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSEL 108
+F ++ N F W +++ + + L++ ++++G V KAC+ L
Sbjct: 82 VFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYL 141
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL------- 161
G+ ++ ++ + F+ + + ++ + C R++ A G F+ +L
Sbjct: 142 FALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVI 201
Query: 162 -SLLKHG-------------KEIHPHHLKKDDLES--------------DLLVNNSLMDF 193
+ ++ G K P + + D+L+N SL+D
Sbjct: 202 DAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDM 261
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y KC L++A F ++ ++ + SWN+M I GF+ +G+ ALE+F M
Sbjct: 262 YCKCGSLELALQLFHRMPKRDVTSWNSM------------ILGFSTHGEVAAALEYFGCM 309
Query: 254 IQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
++T+ + PN I+ GVL+AC HG L+S
Sbjct: 310 VRTEKLMPNAITFVGVLSACN-----------HG---------------GLVS------- 336
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG RYF++M EY ++P +E Y C+VDLLARAG D+ L+
Sbjct: 337 --------------------EGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALD 376
Query: 373 FMKKMPFEP------SSAEPC-----NPDIAEHAARHLFELE------------------ 403
+ MP P S + C +++E AR + E E
Sbjct: 377 VVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASA 436
Query: 404 ---------------------PLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
P S G H F AGDTSH +I L + +
Sbjct: 437 SRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERV 496
Query: 438 KKIGYM---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+++GY K+ HSE+LA+AFGL+ T PG P+R+ KNLR+C +C
Sbjct: 497 ERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNC 556
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H TK +S R REII+ D RFHHF DGACSC DYW
Sbjct: 557 HQVTKLIS----RVFNREIIVRDRIRFHHFKDGACSCMDYW 593
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 163/651 (25%), Positives = 256/651 (39%), Gaps = 216/651 (33%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL------------ 59
PD T T AL C +L +L G V G V +C+ L
Sbjct: 104 ARPDSTTFTLAL--SACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGD 161
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F +MP R+ +W++M+ + G + + ++ + ++GV +AC+
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
++ R+G V+ + LL+HG
Sbjct: 222 ARNVRMGASVHGH------------------------------------------LLRHG 239
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ D++ SL+D YAK L VA F + ++ VSW+AM
Sbjct: 240 ------------MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM------ 281
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+GF Q G + AL F M + +QP++ +L L AC+ + KLG+ +HG+
Sbjct: 282 ------ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGF 335
Query: 288 VLRHHIQLSTGVGIALISI----QGLGTGSFVWNSLID--------MYGRCGAIQKN--- 332
++R + +G A I + L + ++N + D M CGA +
Sbjct: 336 IVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDA 394
Query: 333 ---------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVD 359
EG +F M + + PA + Y C+VD
Sbjct: 395 LTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVD 454
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK 409
LLAR+G ++ + + M EP+ A C ++ E A ++ EL+P G
Sbjct: 455 LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGV 514
Query: 410 V-------------------------------------------HSFIAGDTSHSLVHKI 426
+ H F+ D SH +I
Sbjct: 515 LALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEI 574
Query: 427 SEKLMRLYSEIKKIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRV 472
K+ +L E++K+GY+ R HSE+LA+AFGL++T PG+ L +
Sbjct: 575 VSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+CGDCH KY+SK +REI++ D RFHHF DG CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIA----DREIVVRDAKRFHHFKDGVCSCRDYW 681
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 165/665 (24%), Positives = 273/665 (41%), Gaps = 202/665 (30%)
Query: 14 DLTNPDECTVTYALI--FQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------ 59
+++N E V+ +LI C LN ++ Q+H H++ G++ ++
Sbjct: 40 EISNQKELLVS-SLISKLDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLG 95
Query: 60 --------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
+ E + RN F WT+++ Y + G ++E + ++ + E +
Sbjct: 96 VPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSAL 155
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
KAC +KD +G+ + ++ V ++DM++KC ++ A F+E
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP---- 211
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E D++ L+ YA+ ++ A F + K +V+W AM
Sbjct: 212 -------------------ERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+TGF Q + ALE+F RM ++ ++ + ++++G ++ACAQ+ K
Sbjct: 253 ------------VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 282 K------EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLI 320
+ GY H+ +G ALI + F ++S+I
Sbjct: 301 DRAVQIAQKSGYSPSDHVV----IGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMI 356
Query: 321 ---DMYGRC------------------------GAIQK-------NEGWRYFEMMKKEYN 346
+GR GA+ ++G + F+ M + +
Sbjct: 357 LGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFG 416
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
++P + Y CMVDLL R G+ + L +K M EP C NP+IAE AA
Sbjct: 417 VQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAA 476
Query: 397 RHLFELEP--------LSS------------------------------------GKVHS 412
HLFELEP LS+ G++H
Sbjct: 477 EHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHK 536
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F G+ +H + +KI +KL L + +GY KR+ H+EKLALA
Sbjct: 537 FFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALA 596
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L++T+ S + ++KNLRMC DCH + S+ + IIM DN RFHHF G CS
Sbjct: 597 FSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTG----KVIIMRDNMRFHHFRSGDCS 652
Query: 519 CGDYW 523
CGD+W
Sbjct: 653 CGDFW 657
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 58/208 (27%)
Query: 144 GRMEMASGEFEE----KDFSNLSL---------LKHGKEIHPHHLKKDDLESDLLVNNSL 190
GR SG F E K+ SL L K+IH H L+K +S ++ +
Sbjct: 29 GRTSNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLI 88
Query: 191 ---------MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
MD YA+ R ++ ++ ++ W A++ GYA+ G +E
Sbjct: 89 RTLTKLGVPMDPYAR-RVIE-------PVQFRNPFLWTAVIRGYAIEGKFDE-------- 132
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+ + M + ++ P + + S +L AC +K LG++ H R G
Sbjct: 133 ----AIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLR-------GF 181
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ +V N++IDMY +C +I
Sbjct: 182 CFV---------YVGNTMIDMYVKCESI 200
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 207/485 (42%), Gaps = 139/485 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK--IKQKHLV 216
+ L L+ G+ +H K+ + + V NSL+ Y C + AH F + ++ ++LV
Sbjct: 815 ARLLALREGECLHAEA-AKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLV 873
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN+ML +A G E+ L F M+ D P+ ++ VL ACA+
Sbjct: 874 SWNSMLNSFAANGRPNEV------------LTVFWEMLGVDFAPDGFTIVSVLTACAEFG 921
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI----------------QGLGTGSFVWNSLI 320
LG+ +H YV + + ++ V ALI + GLG W SLI
Sbjct: 922 ALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 981
Query: 321 -----DMYGR------------------------------CGAIQKNEGWRYFEMMKKEY 345
+ +G+ CG + ++G+RYF+ MK++Y
Sbjct: 982 VGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV--DDGFRYFDRMKEDY 1039
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHA 395
+ P +E CMVDLL RAG+ ++ +++ MP EP S A ++ + A
Sbjct: 1040 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 1099
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
L EL+P SG V+
Sbjct: 1100 WERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYE 1159
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALA 458
F+ GD SH +I E L + +++ GY+ R HSE+LA+A
Sbjct: 1160 FVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIA 1219
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ + PG P+R+IKNLRMCGDCH +SK +REII+ D RFHHF GACS
Sbjct: 1220 FALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKV----YDREIIVRDRSRFHHFQGGACS 1275
Query: 519 CGDYW 523
C DYW
Sbjct: 1276 CKDYW 1280
>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Glycine max]
Length = 673
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 160/606 (26%), Positives = 258/606 (42%), Gaps = 162/606 (26%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F+ +PERNV + M+ Y Y++ + +F ++ G V KACS
Sbjct: 88 NVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSD 147
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLKH 166
+ R+G ++ + + + N V ++ ++ KCG + A E + KD + + +
Sbjct: 148 NLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVA 207
Query: 167 GKEIHPHHLKKDDL------------ESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQ 212
G + +++ DD + D SL+ V + + F +++
Sbjct: 208 G---YAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEK 264
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K LVSWN M++ Y + + G +++ + +M + +++P+ I+ + VL AC
Sbjct: 265 KSLVSWNVMISVY----MKNSMPG--------KSVDLYLQMGKCEVEPDAITCASVLRAC 312
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WN 317
+ LG+ IH YV R + + + +LI + L V W
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372
Query: 318 SLIDMYGRCG-------------------------AIQK--------NEGWRYFEMMKKE 344
SLI YG G AI NEG YF+ M +
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEH 394
Y + P +E + C+VDLL R+G+ D+ N +K+MP +P+ C N DI
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492
Query: 395 AARHLFELEPLSSG-------------------------------------------KVH 411
AA L +L P SG +VH
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVH 552
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLAL 457
+F+AGDT H +I E+L L ++K++GY+ + + HSEKLA+
Sbjct: 553 TFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAI 612
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
F +++T SP+R+ KNLR+CGDCH K +SK +REI++ D RFHHF DG C
Sbjct: 613 VFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIV----QREIVIRDTNRFHHFKDGIC 667
Query: 518 SCGDYW 523
SCGDYW
Sbjct: 668 SCGDYW 673
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 87/221 (39%), Gaps = 40/221 (18%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
LM YA +A F I +++++ +N M+ Y ++ AL
Sbjct: 73 LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDD------------ALLV 120
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
F M+ P+ + VL AC+ ++G ++HG V + GL
Sbjct: 121 FRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFK----------------VGL 164
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
FV N LI +YG+CG + + EM K+ + + MV A+ QFDD
Sbjct: 165 DLNLFVGNGLIALYGKCGCLPEAR-CVLDEMQSKD------VVSWNSMVAGYAQNMQFDD 217
Query: 370 TLNFMKKMPFEPSSAEPCN-----PDIAEHAARHLFELEPL 405
L+ ++M + C P + ++ ++ +E +
Sbjct: 218 ALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEM 258
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 165/650 (25%), Positives = 254/650 (39%), Gaps = 201/650 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGMFEK 64
+M L T+A + + C L L L +H + G+ L A + K
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTK 351
Query: 65 MPE--------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
E ++V SWT+M+ Y G ++ VNLF L+ EGV
Sbjct: 352 CKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGV--------- 402
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ Y +++++ +FI EI
Sbjct: 403 -KPNHFTYSTILTVQHA-----------VFIS--------------------------EI 424
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H +K + E V +L+D + K + A F I+ K +++W+AMLAGYA
Sbjct: 425 HAEVIKTN-YEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYA---- 479
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC-AQVKGFKLGKEIHGYVL 289
Q G+ E A + F ++ + ++PN + ++ AC A + GK+ H Y +
Sbjct: 480 --------QAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAI 531
Query: 290 RHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK-- 331
+ + + V +L+++ G+ WNS+I Y + G +K
Sbjct: 532 KLRLNNALCVSSSLVTLYA-KRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKAL 590
Query: 332 -------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+G YF +M ++++ P ME Y CM+DL
Sbjct: 591 EVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDL 650
Query: 361 LARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELEPLSSG-- 408
+RAG ++ + MPF P+ S N ++ + AA + LEP S
Sbjct: 651 YSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAY 710
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
K +SF+AGD SH L I
Sbjct: 711 VLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIY 770
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
KL L + ++ +GY K HSE+LA+AFGLI+T P PL+++
Sbjct: 771 SKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIV 830
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K VS EK R I++ D+ RFHHF G CSCGDYW
Sbjct: 831 KNLRVCGDCHSFIKLVSLVEK----RYIVVRDSNRFHHFKGGLCSCGDYW 876
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 95/434 (21%), Positives = 170/434 (39%), Gaps = 112/434 (25%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG----- 60
+PD + T + + C N +G QVH + CG V++ G
Sbjct: 99 SPD--SYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDG 156
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F++M +R+V SW S++ Y+ + +++ LF L+ EG V A +
Sbjct: 157 RRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQ 216
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKD-------- 157
+G ++ ++ + FE V ++ M K G + A F E KD
Sbjct: 217 GAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMI 276
Query: 158 ---------------FSNLSL-------------------LKHGKEIHPHHLK--KDDLE 181
F+N+ L LK + H K K L
Sbjct: 277 AGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLS 336
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITGFTQY 240
++ V +LM KC+ + A FS + + +VSW AM++GY Q
Sbjct: 337 TNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGY------------LQN 384
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
GD + A+ FS M + ++PN + S +L V+ EIH V++ + + S+ VG
Sbjct: 385 GDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKSSSVG 440
Query: 301 IALI-SIQGLGTGS--------------FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
AL+ + +G S W++++ Y + G + E + F + +E
Sbjct: 441 TALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAG--ETEEAAKIFHQLTRE- 497
Query: 346 NMEPAMEQYCCMVD 359
++P +C +++
Sbjct: 498 GIKPNEFTFCSIIN 511
>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
Length = 784
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 163/630 (25%), Positives = 251/630 (39%), Gaps = 195/630 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FEKMPERN 69
I + C +LG Q+H +I + ++G+ F+ M R+
Sbjct: 216 ILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRD 275
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
+ W +++ + G ++E ++FY L EG+
Sbjct: 276 LILWNALISGCSHGGRHDEAFSIFYGLRKEGL---------------------------- 307
Query: 130 ACVKRPVLDMFIK-CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
V R L +K +E AS +++H +K D V N
Sbjct: 308 -GVNRTTLAAVLKSTASLEAASAT---------------RQVHAL-AEKIGFIFDAHVVN 350
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y KC L A F + +++ +M IT +Q GE A++
Sbjct: 351 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM------------ITALSQCDHGEGAIK 398
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F M++ ++P+ LS +L ACA + ++ GK++H ++++ G AL+
Sbjct: 399 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 458
Query: 305 ---SIQGLG--------TGSFVWNSLI-------------DMYGR--------------- 325
SI+ G W+++I +++GR
Sbjct: 459 KCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 518
Query: 326 --CG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
C A +E RYF MK+ + ++ E Y CM+DLL RAG+ DD + + MPF+
Sbjct: 519 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 578
Query: 381 P----------SSAEPCNPDIAEHAARHLFELEPLSSG---------------------- 408
+S +P++ + AA LF LEP SG
Sbjct: 579 ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVR 638
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH+FI GD SH + +I KL L + K GY+
Sbjct: 639 KLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVD 698
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K + HSE+LA+AF L+ST PG+P+RV KNLR+C DCH K++S
Sbjct: 699 VDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNI- 757
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSCGDYW
Sbjct: 758 ---VSREIIIRDINRFHHFRDGTCSCGDYW 784
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 148/372 (39%), Gaps = 79/372 (21%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + C N++ G QVHA ++ G E F +FEKMP
Sbjct: 112 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 171
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+ +V SW +++ + G+ + L + G + KAC+ +G+
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 231
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK-------HGKE 169
++ +MI + + + ++DM+ K ++ A F+ +L L HG
Sbjct: 232 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 291
Query: 170 IHP-----HHLKKDDLESD------LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS- 217
+ L+K+ L + +L + + ++ + R + K I H+V+
Sbjct: 292 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 351
Query: 218 -----WNAMLAGYALGGFRE-----------EITGFTQYGDGETALEFFSRMIQTDMQPN 261
W A+ F E IT +Q GE A++ F M++ ++P+
Sbjct: 352 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 411
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
LS +L ACA + ++ GK++H ++++ + +F N+L+
Sbjct: 412 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM----------------SDAFAGNALVY 455
Query: 322 MYGRCGAIQKNE 333
Y +CG+I+ E
Sbjct: 456 TYAKCGSIEDAE 467
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 111/397 (27%)
Query: 21 CTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLGMF--------- 62
C +AL + +C + + +LG QVHA + G L A G F
Sbjct: 7 CCNEFALPVVLKC--VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 64
Query: 63 --EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
E ERN SW +M Y + + +F ++ G V AC+ ++
Sbjct: 65 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 124
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
G+ V+ ++ + +E + ++DM++K GR+++AS FE+ S++
Sbjct: 125 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 184
Query: 162 ------------------------------SLLKH---------GKEIHPHHLKKDDLES 182
S+LK G++IH +K + +S
Sbjct: 185 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADS 243
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + L+D YAK +L A F + + L+ WNA+++G + GG +E
Sbjct: 244 DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE--------- 294
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A F + + + N +L+ VL + A ++ +++H A
Sbjct: 295 ---AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVH----------------A 335
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
L G + V N LID Y +C + ++ R FE
Sbjct: 336 LAEKIGFIFDAHVVNGLIDSYWKCSCL--SDAIRVFE 370
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 163/611 (26%), Positives = 245/611 (40%), Gaps = 188/611 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLI-----------VCGVELCAFLG-------MFEKM 65
TY +F+ C E G+QVHAH+I G+++ G M +
Sbjct: 132 TYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGED 191
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------YKACSELKDHRVGKD 116
+V + +M+ Y G E LF+ + D+ V C +++ R +
Sbjct: 192 GNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEAR---E 248
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRME--------MASGEFEEKDF---------S 159
+++ M E N ++D +IK G + M E + F +
Sbjct: 249 LFNEMK----EKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACA 304
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
NL L G+ IH ++ + D ++ +L+D YAKC L +A F K+++K + +WN
Sbjct: 305 NLGALDQGRWIHA-YVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWN 363
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
AM+ G + +G E A+E F +M + +PN I+L GVL+ACA
Sbjct: 364 AMICGLGM------------HGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAH----- 406
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+ ++D EG R F
Sbjct: 407 -------------------------------------SGMVD-----------EGLRIFN 418
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNP 389
M++ Y +EP ME Y C+VDLL RAG + M MP EPS+A + +
Sbjct: 419 SMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDV 478
Query: 390 DIAEHAARHLFELEPLSSGK---------------------------------------- 409
++ E + L ELEP +SG+
Sbjct: 479 ELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDF 538
Query: 410 ---VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHS 452
VH F GD SH + I L + +K G+ HS
Sbjct: 539 DGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHS 598
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI+T PG+ + V+KNLRMC DCHS K +S+ +REII+ D R+HHF
Sbjct: 599 EKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQV----YDREIIVRDRARYHHF 654
Query: 513 VDGACSCGDYW 523
G CSC D+W
Sbjct: 655 KTGTCSCKDFW 665
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 169/649 (26%), Positives = 262/649 (40%), Gaps = 195/649 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG- 60
L M + P+ Y + C L G +VHAH+I L F G
Sbjct: 40 LLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGK 99
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+ ++MPE+NV SWT+M+ Y+ G+ E + +F ++ D
Sbjct: 100 CDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMR----------SDG 149
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ + + +++ +C++ ASG L GK+IH
Sbjct: 150 KPNEFTFATVLT------SCIR---------------ASG------------LGLGKQIH 176
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K + +S + V +SL+D YAK +K A F + ++ +VS A++AGYA
Sbjct: 177 GL-IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYA----- 230
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G E ALE F R+ M PN ++ + +L A + + GK+ H +VLR
Sbjct: 231 -------QLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 283
Query: 292 HIQLSTGVGIALISI-QGLGTGSFV--------------WNSLIDMYGRCG--------- 327
+ + +LI + G S+ WN+++ Y + G
Sbjct: 284 ELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF 343
Query: 328 -------------------------AIQKNEGWRYFE-MMKKEYNMEPAMEQYCCMVDLL 361
++ G F+ M+ EY +P E Y C+VD+L
Sbjct: 344 RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDML 403
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ D+ F+K+MP +P++ C + DI E R L E+EP ++G
Sbjct: 404 GRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYV 463
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F A D +H ++
Sbjct: 464 ILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLA 523
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
K+ + ++K+ GY+ + GHSEKLAL FGLI+T G P+RV K
Sbjct: 524 KMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFK 583
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K SK ERE+ + D RFH VDG CSCGDYW
Sbjct: 584 NLRICVDCHNFAKIFSKV----FEREVSLRDKNRFHQIVDGICSCGDYW 628
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 147/579 (25%), Positives = 242/579 (41%), Gaps = 175/579 (30%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE + ER+ +WT+M+ G E +++F + EGV G D Y
Sbjct: 232 ALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGV------------GIDQYT 279
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ + CG L+ L+ GK+IH + + +
Sbjct: 280 FG----------------SILTACG---------------ALAALEEGKQIHAY-ITRTC 307
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E ++ V ++L+D Y+KCR +++A F ++ K+++SW AM+ GY Q
Sbjct: 308 YEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYG------------Q 355
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G GE A+ FS M + ++P+ +L V+++CA + + G + H L ++ V
Sbjct: 356 NGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTV 415
Query: 300 GIALISIQG-----------LGTGSF----VWNSLIDMYGRCGAIQK------------- 331
AL+++ G SF W +L+ Y + G ++
Sbjct: 416 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGV 475
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
++G YF M++++++ P + Y CM+DL +R+G
Sbjct: 476 KPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAE 535
Query: 372 NFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEPLSSG------------- 408
F+K+MP P + C + +I + AA +L +L+P +
Sbjct: 536 EFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKG 595
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
KVH F A D SH I EKL L S++
Sbjct: 596 EWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMV 655
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+ GY + + HSEKLA+AFGLI P P+R++KNLR+C DCH+
Sbjct: 656 EEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHN 715
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++SK R+I++ D RFH F +G CSCGD+W
Sbjct: 716 ATKFISKITG----RDILVRDAVRFHKFSNGICSCGDFW 750
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 118/286 (41%), Gaps = 63/286 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDE-----------GVYKACSEL 108
+F +P+R+ S+ +++ ++ G + + LL DE GV S L
Sbjct: 99 LFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL 158
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
D +G+ V+ ++ + F A P++DM+ K G + A F+E + N+
Sbjct: 159 GDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV------- 211
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++ N+++ +C+ + A F I+++ ++W M
Sbjct: 212 ----------------VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTM------- 248
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+TG TQ G AL+ F RM + + + +L AC + + GK+IH Y+
Sbjct: 249 -----VTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYI 303
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
R + + FV ++L+DMY +C +++ E
Sbjct: 304 TRTCYEDNV----------------FVGSALVDMYSKCRSVRLAEA 333
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 85/187 (45%), Gaps = 37/187 (19%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+++ LL H + + ++ L+ NSL+ A+ ++ F+ + Q+ VS
Sbjct: 56 YASSGLLPHARRVFDAMPGRN-----LVTGNSLLSALARAGLVRDMERLFTSLPQRDAVS 110
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQV 275
+NA+LA GF++ G A + +++ + ++P+ I++SGV+ + +
Sbjct: 111 YNALLA------------GFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL 158
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
LG+++H +LR G G +F + L+DMY + G I +
Sbjct: 159 GDRALGRQVHCQILR----------------LGFGAYAFTGSPLVDMYAKVGPI--GDAR 200
Query: 336 RYFEMMK 342
R F+ M+
Sbjct: 201 RVFDEME 207
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ I C L LE G Q+HA++ E F+G +F +M
Sbjct: 279 TFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRM 338
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
+N+ SWT+M+ Y G EE V +F + +G V +C+ L G
Sbjct: 339 MWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGA 398
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
+ + V ++ ++ KCG +E A F+E F +
Sbjct: 399 QFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHD 443
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 171/625 (27%), Positives = 245/625 (39%), Gaps = 203/625 (32%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ N + V + V + +F+KMPERNV SWT+M+ Y G E
Sbjct: 16 LFDKMPETNTISWNGLVSGY--VQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIE 73
Query: 88 EIVNLFYL---------------LIDEGVYKACSELKDHRVGKDVY---DYMISIKFEGN 129
E LF+ LI++G +L D KDV + + + EG
Sbjct: 74 EAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGR 133
Query: 130 ACVKRPVLDMFIK---CGRMEMASGE------------FEEKDFS--------------- 159
R + D + M SGE +E K F
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGV 193
Query: 160 ---------------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204
+L+ L HG+++H L + + D+ V++ L+ Y KC L A
Sbjct: 194 RPSFPSVISVLSVCGSLASLDHGRQVHSQ-LVRSQFDIDIYVSSVLITMYIKCGDLVTAK 252
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
F + K +V WN+++AGYA Q+G GE ALE F M + + P+ I+
Sbjct: 253 RVFDRFSSKDIVMWNSIIAGYA------------QHGFGEKALEVFHDMFSSSIAPDEIT 300
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324
GVL+AC+ K
Sbjct: 301 FIGVLSACSYTGKVK--------------------------------------------- 315
Query: 325 RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
EG FE MK +Y ++P E Y CMVDLL RAG+ ++ +N ++ MP E +
Sbjct: 316 --------EGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAI 367
Query: 385 ------EPC----NPDIAEHAARHLFELEPLSSG-------------------------- 408
C N D+AE AA+ L +LEP ++G
Sbjct: 368 VWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMR 427
Query: 409 -----------------KVHSFIAG-DTSHSLVHKISEKLMRLYSEIKKIGY-------- 442
KVH F G TSH I +KL +L + +++ GY
Sbjct: 428 AKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVM 487
Query: 443 ------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
K HSEKLA+A+GL+ G P+RV+KNLR+CGD HS K +++
Sbjct: 488 HDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTG-- 545
Query: 497 REREIIMIDNYRFHHFVDGACSCGD 521
REII+ D RFHHF DG CSC D
Sbjct: 546 --REIILRDTNRFHHFKDGLCSCSD 568
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 149/589 (25%), Positives = 242/589 (41%), Gaps = 197/589 (33%)
Query: 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM------------ 61
D + T+A++ + L + +G Q+HA + G+ CA + M
Sbjct: 73 DAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARF 132
Query: 62 -FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
FE+MPE+ W +++ Y + GY EE ++++Y E++D V D + +
Sbjct: 133 VFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYY------------EMRDSGVKMDHFTF 180
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ ++ C R L+ ++H K+ H L +
Sbjct: 181 SMIVRI----------------CAR---------------LASVEHAKQAHAA-LIRHGF 208
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
SD++ N +L+DFY+K ++ A F K+ K+++SWNA++ GY +
Sbjct: 209 GSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYG------------NH 256
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G A+E F +MIQ M PN I+ VL+AC+ H LS
Sbjct: 257 GRGSEAVELFEQMIQERMNPNHITFLAVLSACS------------------HSGLS---- 294
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
GW F+ M ++ ++P Y CM++L
Sbjct: 295 -------------------------------ERGWEIFQSMGRDNRIKPRAMHYACMIEL 323
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------ 404
+ R G D+ L ++ PF+P++ C N ++ + AA L+ +EP
Sbjct: 324 MGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLYGMEPDKLNNY 383
Query: 405 -------LSSGKV------------------------------HSFIAGDTSHSLVHKIS 427
S+G + H F++GD H +I
Sbjct: 384 IVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGDNRHPQRKEIY 443
Query: 428 EKLMRLYSEIKKIGYMKR----IPACG---------HSEKLALAFGLISTSPGSPLRVIK 474
+K+ +L EI K GY+ +P HSEKLA+AFGLIST +PL++++
Sbjct: 444 QKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLYHSEKLAIAFGLISTPYWAPLQIVQ 503
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH K +++ REI++ D RFHHF G CSC DYW
Sbjct: 504 GHRICGDCHEAIKLIARVTG----REIVIRDAGRFHHFKHGHCSCEDYW 548
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 28/153 (18%)
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ E D + N ++ + KC + A F ++ +++LVSWN + I+G
Sbjct: 4 NGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTI------------ISGL 51
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
GD A F M + + + + ++ A A ++ +G+++H L+
Sbjct: 52 VDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLK------- 104
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G+G FV +LIDMY +CG+I+
Sbjct: 105 ---------MGIGDDIFVSCALIDMYSKCGSIE 128
>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
Length = 679
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 167/662 (25%), Positives = 270/662 (40%), Gaps = 188/662 (28%)
Query: 28 IFQRCPKLNNLELGIQVHA---------------HLIV----CGVELCAFLGMFEKMPER 68
+ Q C +L L G ++H HL++ CG A L +FE P +
Sbjct: 40 VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARL-VFEATPAK 98
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH-RVGKDV 117
NVFSWT ++ + G +E + LFY ++ +G+ ACS + G+ +
Sbjct: 99 NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKHGKE 169
+ + F+ ++ M+ KCG +E + FE N + +H +
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRG 218
Query: 170 IHP-HHLKKDDLE-----SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+ L+K LE SD++V +L++ YAKC L A+ F K+++ ++++WN +++
Sbjct: 219 LEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLIS 278
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y Q+ + A+E F RM+ ++ + ++ +L AC + G+
Sbjct: 279 AY------------VQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRA 326
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGT-GSF----------------VWNSLIDMYGRC 326
IH V R H S + + + G GS WN++I YG+
Sbjct: 327 IHACV-REHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQH 385
Query: 327 GAIQK----------------------------------NEGWRYFEMMKKEYNMEPAME 352
G + E YF M++++ + P
Sbjct: 386 GHTSEALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGG 445
Query: 353 QYCCMVDLLARAGQFDDTLNF-------------------------MKKMPFEPSSAEPC 387
Y CMV+ L +AG+ D MK+ A
Sbjct: 446 HYGCMVESLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRI 505
Query: 388 NPD--------------------------------IAEHAARHLFELEPLSSGKVHSFIA 415
+P+ I ++A R + +L V+ F A
Sbjct: 506 DPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKL----GTSVYEFTA 561
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGL 461
GD S+ +I ++L RL E+K GY K HSE+LA+AFG+
Sbjct: 562 GDQSNPRSKEIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGI 621
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
ISTSPG+PLR++KNLR+CGDCH+ TK SK + REII+ D+ RFHHF +G+CSC D
Sbjct: 622 ISTSPGTPLRIMKNLRVCGDCHTMTKLTSKITR----REIIVRDSNRFHHFKNGSCSCKD 677
Query: 522 YW 523
+W
Sbjct: 678 FW 679
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 136/474 (28%), Positives = 212/474 (44%), Gaps = 136/474 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+E+H H +++ +++D +V ++L D YAKC + A F ++ + +VSW AM+ Y
Sbjct: 181 GRELHCHVVRRG-IDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERY- 238
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
F DGE F RM+++ +QPN + +GVL ACA+ KLGK++HG
Sbjct: 239 ----------FDARRDGE-GFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHG 287
Query: 287 YV--------------LRHHIQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK 331
+ L H +G A+ +G+ V W ++I Y + G Q
Sbjct: 288 RMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNG--QP 345
Query: 332 NEGWRYFEMM-----------------------------------KKEYNMEPAMEQYCC 356
+E RYF+M+ K EY +E + Y C
Sbjct: 346 DEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYAC 405
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLS 406
++DLL+R+G F+ + M +P S C N +A AA LFE+EP +
Sbjct: 406 VIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPEN 465
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
++H F+ GD H
Sbjct: 466 PATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQA 525
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
++ L +LY ++++ GY+ K+ HSE+LA+AFG+I+T G+P
Sbjct: 526 EQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAP 585
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++V KNLR+CGDCH+ K +SK +REII+ D+ RFHHF +G+CSC DYW
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIV----QREIIVRDSNRFHHFKNGSCSCRDYW 635
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 32/152 (21%)
Query: 182 SDLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+D+ N+L+ + R L A F ++ ++ SW+A+++ +A ++
Sbjct: 90 TDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHA------------RH 137
Query: 241 GDGETALEFFSRMIQTDMQP---NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
G AL + RM++ N + S LAA + + G+E+H +V+R
Sbjct: 138 GQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVR------- 190
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+G+ + VW++L DMY +CG +
Sbjct: 191 ---------RGIDADAVVWSALADMYAKCGRV 213
>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 877
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 163/630 (25%), Positives = 251/630 (39%), Gaps = 195/630 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FEKMPERN 69
I + C +LG Q+H +I + ++G+ F+ M R+
Sbjct: 309 ILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRD 368
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
+ W +++ + G ++E ++FY L EG+
Sbjct: 369 LILWNALISGCSHGGRHDEAFSIFYGLRKEGL---------------------------- 400
Query: 130 ACVKRPVLDMFIK-CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
V R L +K +E AS +++H +K D V N
Sbjct: 401 -GVNRTTLAAVLKSTASLEAASAT---------------RQVHAL-AEKIGFIFDAHVVN 443
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+D Y KC L A F + +++ +M IT +Q GE A++
Sbjct: 444 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM------------ITALSQCDHGEGAIK 491
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F M++ ++P+ LS +L ACA + ++ GK++H ++++ G AL+
Sbjct: 492 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA 551
Query: 305 ---SIQGLG--------TGSFVWNSLI-------------DMYGR--------------- 325
SI+ G W+++I +++GR
Sbjct: 552 KCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTS 611
Query: 326 --CG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
C A +E RYF MK+ + ++ E Y CM+DLL RAG+ DD + + MPF+
Sbjct: 612 VLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671
Query: 381 P----------SSAEPCNPDIAEHAARHLFELEPLSSG---------------------- 408
+S +P++ + AA LF LEP SG
Sbjct: 672 ANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVR 731
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
KVH+FI GD SH + +I KL L + K GY+
Sbjct: 732 KLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVD 791
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K + HSE+LA+AF L+ST PG+P+RV KNLR+C DCH K++S
Sbjct: 792 VDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIV 851
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSCGDYW
Sbjct: 852 ----SREIIIRDINRFHHFRDGTCSCGDYW 877
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/372 (20%), Positives = 148/372 (39%), Gaps = 79/372 (21%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + C N++ G QVHA ++ G E F +FEKMP
Sbjct: 205 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 264
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+ +V SW +++ + G+ + L + G + KAC+ +G+
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 324
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK-------HGKE 169
++ +MI + + + ++DM+ K ++ A F+ +L L HG
Sbjct: 325 IHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGR 384
Query: 170 IHP-----HHLKKDDLESD------LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS- 217
+ L+K+ L + +L + + ++ + R + K I H+V+
Sbjct: 385 HDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNG 444
Query: 218 -----WNAMLAGYALGGFRE-----------EITGFTQYGDGETALEFFSRMIQTDMQPN 261
W A+ F E IT +Q GE A++ F M++ ++P+
Sbjct: 445 LIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPD 504
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
LS +L ACA + ++ GK++H ++++ + +F N+L+
Sbjct: 505 PFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM----------------SDAFAGNALVY 548
Query: 322 MYGRCGAIQKNE 333
Y +CG+I+ E
Sbjct: 549 TYAKCGSIEDAE 560
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 153/397 (38%), Gaps = 111/397 (27%)
Query: 21 CTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLGMF--------- 62
C +AL + +C + + +LG QVHA + G L A G F
Sbjct: 100 CCNEFALPVVLKC--VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157
Query: 63 --EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
E ERN SW +M Y + + +F ++ G V AC+ ++
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------- 161
G+ V+ ++ + +E + ++DM++K GR+++AS FE+ S++
Sbjct: 218 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 277
Query: 162 ------------------------------SLLKH---------GKEIHPHHLKKDDLES 182
S+LK G++IH +K + +S
Sbjct: 278 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKA-NADS 336
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + L+D YAK +L A F + + L+ WNA+++G + GG +E
Sbjct: 337 DDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDE--------- 387
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A F + + + N +L+ VL + A ++ +++H A
Sbjct: 388 ---AFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVH----------------A 428
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
L G + V N LID Y +C + ++ R FE
Sbjct: 429 LAEKIGFIFDAHVVNGLIDSYWKCSCL--SDAIRVFE 463
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 102/276 (36%), Gaps = 76/276 (27%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
C +F+++P+ SW+S++ Y+ G + F+ + EGV C+E V K
Sbjct: 54 CCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV--CCNEFALPVVLK 111
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
V D + + M MA+G
Sbjct: 112 CVPDAQLGAQVHA-----------------MAMATG------------------------ 130
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEI 234
SD+ V N+L+ Y ++ A F + +++ VSWN +++ Y
Sbjct: 131 ----FGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN------ 180
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q GD A++ F M+ + +QP S V+ AC + G+++H V+R
Sbjct: 181 ---DQCGD---AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVR---- 230
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G F N+L+DMY + G +
Sbjct: 231 ------------MGYEKDVFTANALVDMYVKMGRVD 254
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +H + LK L S + N L+ FY+KCR A F +I VSW+++
Sbjct: 23 GAHLHANLLKSGFLAS---LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSL----- 74
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+T ++ G +A++ F M + N +L VL V +LG ++H
Sbjct: 75 -------VTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVH- 123
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
A+ G G+ FV N+L+ MYG G + ++ R F+ E N
Sbjct: 124 ---------------AMAMATGFGSDVFVANALVAMYGGFGFM--DDARRVFDEAGSERN 166
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 180/732 (24%), Positives = 285/732 (38%), Gaps = 224/732 (30%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV----------- 53
+ L L+ M+ +PD+ T + L C K GIQ+H ++ G
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGL--SACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 54 -------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-DEGV---- 101
EL + +F++M ERNV SWTSM+ Y + ++ V+LF+ ++ DE V
Sbjct: 177 HFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
AC++L+D G+ VY ++ + E N + ++DM++KC +++A F+E
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 156 KDFSNLSLLKH------------------------------------------------G 167
SNL L G
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG 356
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K H + L+ + ES + N+L+D Y KC A F ++ K +V+WN+++AGY
Sbjct: 357 KSCHGYVLR-NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415
Query: 228 GG-------------------FREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSG 267
G + I+G Q E A+E F M Q + + +++
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------------- 306
+ +AC + L K I+ Y+ ++ IQL +G L+ +
Sbjct: 476 IASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Query: 307 -----------------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
QGL + + G +Q +G
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQ--QGKEI 593
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F M K + + P Y CMVDLL RAG ++ + ++ MP EP+ C
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653
Query: 388 NPDIAEHAARHLFELEP--------LSS-------------------------------- 407
N ++A +AA + L P LS+
Sbjct: 654 NVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
GK H F +GD SH + I L + +G++ +
Sbjct: 714 QIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSR 773
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+GLIS++ G+ +R++KNLR+C DCHS K+ SK REII+ DN RFH
Sbjct: 774 HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKV----YNREIILRDNNRFH 829
Query: 511 HFVDGACSCGDY 522
+ G CSCGD+
Sbjct: 830 YIRQGKCSCGDF 841
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+N+++ GYA G E A+ F RM+ + + P+ + L+ACA+ +
Sbjct: 102 YNSLIRGYASSGLCNE------------AILLFLRMMNSGISPDKYTFPFGLSACAKSRA 149
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G +IHG +++ G FV NSL+ Y CG + + +
Sbjct: 150 KGNGIQIHGLIVK----------------MGYAKDLFVQNSLVHFYAECGEL--DSARKV 191
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA- 396
F+ M E + + M+ AR D ++ +M + E P+
Sbjct: 192 FDEMS-----ERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD----EEVTPNSVTMVCV 242
Query: 397 -RHLFELEPLSSG-KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+LE L +G KV++FI ++ + + L+ +Y + I KR+
Sbjct: 243 ISACAKLEDLETGEKVYAFIR-NSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293
>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
Length = 787
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 163/651 (25%), Positives = 256/651 (39%), Gaps = 216/651 (33%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL------------ 59
PD T T AL C +L +L G V G V +C+ L
Sbjct: 104 ARPDSTTFTLAL--SACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGD 161
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F +MP R+ +W++M+ + G + + ++ + ++GV +AC+
Sbjct: 162 AVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTA 221
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
++ R+G V+ + LL+HG
Sbjct: 222 ARNVRMGASVHGH------------------------------------------LLRHG 239
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ D++ SL+D YAK L VA F + ++ VSW+AM
Sbjct: 240 ------------MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAM------ 281
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I+GF Q G + AL F M + +QP++ +L L AC+ + KLG+ +HG+
Sbjct: 282 ------ISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGF 335
Query: 288 VLRHHIQLSTGVGIALISI----QGLGTGSFVWNSLID--------MYGRCGAIQKN--- 332
++R + +G A I + L + ++N + D M CGA +
Sbjct: 336 IVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDA 394
Query: 333 ---------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVD 359
EG +F M + + PA + Y C+VD
Sbjct: 395 LTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVD 454
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK 409
LLAR+G ++ + + M EP+ A C ++ E A ++ EL+P G
Sbjct: 455 LLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGV 514
Query: 410 V-------------------------------------------HSFIAGDTSHSLVHKI 426
+ H F+ D SH +I
Sbjct: 515 LALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEI 574
Query: 427 SEKLMRLYSEIKKIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRV 472
K+ +L E++K+GY+ R HSE+LA+AFGL++T PG+ L +
Sbjct: 575 VSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVI 634
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+CGDCH KY+SK +REI++ D RFHHF DG CSC DYW
Sbjct: 635 IKNLRVCGDCHDAIKYISKIA----DREIVVRDAKRFHHFKDGVCSCRDYW 681
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 228/533 (42%), Gaps = 185/533 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ M ER+V SW SM+ +Y G E + L+ +++ G C
Sbjct: 111 VFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC--------------- 154
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
NA VL + C ++ ++ GK IH + + + L
Sbjct: 155 --------NAVALSAVL---LAC---------------AHAGAIQTGKHIH-NQVVRMGL 187
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E ++ V S++D Y+KC +++A F KIK+K+++SW+AM ITG+ +
Sbjct: 188 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAM------------ITGYGMH 235
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ ALE F+ M ++ ++PN I+ VLAAC+
Sbjct: 236 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA------------------------- 270
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+D EG ++ MK+E+ +E +E Y CMVDL
Sbjct: 271 -----------------GLLD-----------EGRYWYNAMKQEFGIEAGVEHYGCMVDL 302
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS--- 407
L RAG D+ + +K+M +P +A C N ++AE + + LFEL+ +S
Sbjct: 303 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYY 362
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
GK++ F GD SH +I
Sbjct: 363 VLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIY 422
Query: 428 EKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPL 470
L +L +++ GY +P G HSEKLA+AF L+++ P S +
Sbjct: 423 SYLEKLLERMQEAGY---VPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 479
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+IKNLR+C DCH+ K+++K EREII+ D RFHHF DG CSC DYW
Sbjct: 480 HIIKNLRVCSDCHTAMKFITKIT----EREIIIRDLQRFHHFKDGLCSCRDYW 528
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 157/651 (24%), Positives = 263/651 (40%), Gaps = 170/651 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LLQ+ P +T + + L + LG Q H ++ G AF+G
Sbjct: 129 LLQADSSVRPSR--ITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYA 186
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---ACSE 107
F+++ +NV + +M+ EE LF ++ D +
Sbjct: 187 KMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTG 246
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
+ + + + ++F+G A + + CG LS L+ G
Sbjct: 247 FTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACG---------------ALSALEQG 291
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K+IH + + + + ++ V ++L+D Y+KCR +K+A F ++ K+++SW A++ GY
Sbjct: 292 KQIHAY-IIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQ 350
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G EE A+ FS M + + P+ +L V+++CA + + G + H
Sbjct: 351 NGCSEE------------AVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCL 398
Query: 288 VLRHHIQLSTGVGIALISIQG-----------LGTGSF----VWNSLIDMYGRCGAIQKN 332
L + V AL+++ G SF W +L+ Y + G ++
Sbjct: 399 ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKET 458
Query: 333 ---------------------------------EGWRYFEMMKKEYNMEPAMEQYCCMVD 359
+G YF M+K++ + P + Y CM+D
Sbjct: 459 IDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMID 518
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG- 408
L +R+G+ + F+K+MP P + C + +I + AA +L E++P +
Sbjct: 519 LYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPAS 578
Query: 409 ------------------------------------------KVHSFIAGDTSHSLVHKI 426
KVH F A D SH I
Sbjct: 579 YVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGI 638
Query: 427 SEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRV 472
EKL L S++ + GY + + HSEKLA+AFGLI P+R+
Sbjct: 639 YEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRI 698
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLR+C DCH+ TK++SK R+I++ D RFH F DG CSCGD+W
Sbjct: 699 VKNLRVCVDCHNATKFISKITG----RDILVRDAVRFHKFSDGVCSCGDFW 745
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L N+L+ A R L F+ + Q+ +VS+NA++AG++ GG +
Sbjct: 71 NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQ--------- 121
Query: 243 GETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ + ++Q D ++P+ I++S ++ A + + LGK+ H +LR + VG
Sbjct: 122 ---AVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVG 178
Query: 301 IALI------SIQGLGTGSF---------VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
L+ S+ G +F ++N++I RC ++ E R FE+M
Sbjct: 179 SPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVE--EARRLFEVMTDRD 236
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
++ + MV + G + L ++M F+
Sbjct: 237 SI-----TWTTMVTGFTQNGLESEALEIFRRMRFQ 266
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 152/597 (25%), Positives = 242/597 (40%), Gaps = 199/597 (33%)
Query: 56 CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------V 101
C F+ + F+ M ER++ SW +M+G+Y E +++F + +EG V
Sbjct: 109 CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 168
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------- 147
AC D K ++ + + N V +LD++ KCG ++
Sbjct: 169 LSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSS 228
Query: 148 -----MASGEFEEKDF-----------------------------SNLSLLKHGKEIHPH 173
M +G + K++ SNL+ L GK++H
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA- 287
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ K S++ V +S +D YAKC L+ ++ FS++++K+L WN +
Sbjct: 288 VICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTI------------ 335
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I+GF ++ + + F +M Q M PN ++ S +L+ C
Sbjct: 336 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC--------------------- 374
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G G +++ G R+F++M+ Y + P +
Sbjct: 375 ------------------------------GHTGLVEE--GRRFFKLMRTTYGLSPNVVH 402
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y CMVD+L RAG + +K +PF+P+++ C N ++AE AA LFELE
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462
Query: 404 PLSSG-------------------------------------------KVHSFIAGDTSH 420
P ++G KVH+F G++ H
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGH 522
Query: 421 SLVHKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSP 466
+ +I L L + +K GY + HSEKLAL FGL+
Sbjct: 523 PRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 582
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SP+R++KNLR+C DCH K S A + R II+ D RFHHF DG CSCGD+W
Sbjct: 583 SSPVRIMKNLRICVDCHEFMKAASMATR----RFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HGK I + DLE D+ + N L++ Y+KC ++++A F + ++ LVSWN M+ Y
Sbjct: 84 HGKII------RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLY 137
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E AL+ F M + + ++S VL+AC K++H
Sbjct: 138 TRNRMESE------------ALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++ I L+ VG A L+D+Y +CG I+ + + FE M+
Sbjct: 186 CLSVKTCIDLNLYVGTA----------------LLDLYAKCGMIK--DAVQVFESMQ 224
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 179/703 (25%), Positives = 268/703 (38%), Gaps = 257/703 (36%)
Query: 9 LLQSMDLTNPDECTV------------TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL- 55
L S DL +P E V T+ + + C K E G Q+HA ++ G EL
Sbjct: 58 LASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELD 117
Query: 56 ----------------------------------CAFL--------------GMFEKMPE 67
C L +F+ + E
Sbjct: 118 RYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITE 177
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG----VYKACSELKDHRVGKDV 117
R+V SW +M+ Y YEE + LF ++ DEG V AC++ +G+++
Sbjct: 178 RDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREI 237
Query: 118 YDYMISIKFEGNAC-VKRPVLDMFIKCGRMEMASGEFE---------------------- 154
+ + G++ + + ++ KCG +E+ASG FE
Sbjct: 238 HTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNL 297
Query: 155 -----------------EKDFSNLSLLKH---------GKEIHPHHLKK-DDLESDLLVN 187
D + LS+L G+ IH + K+ + + +
Sbjct: 298 YKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
SL+D YAKC ++ AH F+ + K L SWNAM+ G+A+ +G A
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAM------------HGRANAAF 405
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ FSRM + ++P+ I+L G+L+AC+
Sbjct: 406 DLFSRMRKNGIEPDDITLVGLLSACSH--------------------------------- 432
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+ L+D+ G F+ + ++YN+ P +E Y CM+DLL AG F
Sbjct: 433 ---------SGLLDL-----------GRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLF 472
Query: 368 DDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK-------- 409
+ + MP EP C N ++AE A+ L E+EP +SG
Sbjct: 473 KEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIY 532
Query: 410 -----------------------------------VHSFIAGDTSHSLVHKISEKLMRLY 434
VH FI GD H +I L +
Sbjct: 533 ATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMD 592
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+++ G++ K HSEKLA+AFGLIST PG+ L V+KNLR+C
Sbjct: 593 VLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCR 652
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CH TK +SK K REI+ D RFHHF DG CSC DYW
Sbjct: 653 NCHEATKLISKIYK----REIVARDRTRFHHFRDGVCSCCDYW 691
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 28/124 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F ++ +L+ WN ML G A D + LE + RM+ PN +
Sbjct: 40 FETXQEPNLLIWNTMLRGLA------------SSSDLVSPLEMYVRMVSXGHVPNAYTFP 87
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+L +CA+ K F+ G++IH V++ +L + SLI MY R
Sbjct: 88 FLLKSCAKSKTFEEGRQIHAQVMKLGCELD----------------RYAHTSLISMYARN 131
Query: 327 GAIQ 330
G ++
Sbjct: 132 GRLE 135
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 156/537 (29%), Positives = 222/537 (41%), Gaps = 163/537 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLG-------YYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+FE P R+V +WT+M+ + G Y+EE+ + L+ + E
Sbjct: 152 LFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEM-PMKNLVTWNAMIAGYIENCQAEN 210
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G ++ M+ F N VL + C SNLS LK GK++H
Sbjct: 211 GLKLFKRMVESGFRPNPSSLSSVL---LGC---------------SNLSALKLGKQVH-Q 251
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ K + ++ SL+ Y KC L+ A F + QK +V+WNAM++GYA
Sbjct: 252 LICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYA------- 304
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q+G GE AL F +M M+P+ I+ VL+AC LG E ++R
Sbjct: 305 -----QHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR--- 356
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
+Y +E +
Sbjct: 357 --------------------------------------------------DYGVEAKPDH 366
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y C+VDLL R G+ + ++ +KKMPF+P SA C N ++AE AA++L L+
Sbjct: 367 YTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLD 426
Query: 404 PLSSGK-------------------------------------------VHSFIAGDTSH 420
P S+ VH F +GD H
Sbjct: 427 PESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIH 486
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+ I EKL L +++ GY+ K+ HSEKLA+A+GLI
Sbjct: 487 PELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPL 546
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+P+RV KNLR+CGDCHS TKY+S E R II+ D RFHHF G CSCGDYW
Sbjct: 547 GTPIRVFKNLRVCGDCHSATKYISAIEG----RVIIVRDTTRFHHFRQGECSCGDYW 599
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 153/605 (25%), Positives = 252/605 (41%), Gaps = 171/605 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK--DVY 118
+ ++MP+++ +WT+M V+GY + G A + + GK V+
Sbjct: 223 VLDEMPDKDDLTWTTM-----VVGY-----------VRRGDVNAARSVFEEVDGKFDVVW 266
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIH 171
+ MIS + C D F RM +E F+ N HGK +H
Sbjct: 267 NAMISGYVQSGMCA-----DAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 321
Query: 172 PHHLKKDD---LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++ E+ L VNN+L+ Y+K + +A F + K +VSWN +L+GY
Sbjct: 322 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 381
Query: 229 GFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
G ++ ++G+ G E AL+ F++M D++P + +G +
Sbjct: 382 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 441
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSF 314
AAC ++ K G+++H ++++ + S G AL+++ S
Sbjct: 442 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 501
Query: 315 VWNSLIDMYGRCG---------------------------------AIQKNEGWRYFEMM 341
WN++I G+ G A +EG+ YFE M
Sbjct: 502 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 561
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI-- 391
K+++ + P + Y ++DLL R+G+ + + +K MPFEP+ S N D+
Sbjct: 562 KRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEF 621
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
+AA LF + P G
Sbjct: 622 GAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGS 681
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
K+H F+ GDT H ++ + L + + ++K+GY+ K HSEK
Sbjct: 682 KIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEK 741
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+ FGL+ PG+ + V+KNLR+CGDCH+ ++SKA REI++ D RFHHF D
Sbjct: 742 LAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVG----REIVVRDVRRFHHFKD 797
Query: 515 GACSC 519
G CSC
Sbjct: 798 GECSC 802
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----AFLGMFE 63
L M + C TYA C +L L+ G Q+HAHL+ CG E A L M+
Sbjct: 421 LFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYA 480
Query: 64 K-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
K MP + SW +M+ G+ E + LF ++ EG+
Sbjct: 481 KCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGI 531
>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 646
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 232/589 (39%), Gaps = 152/589 (25%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A +FE++P RNV SW + G Y I G +L D
Sbjct: 91 DLTAARELFERIPRRNVMSWNILFGGY----------------IKNGDLGGARKLFDEMP 134
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKE 169
++V + + N L F+ R M EF + L + G++
Sbjct: 135 ERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ 194
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H + + + L+ D+ V +SL Y +C L+ + +VS N ++AG
Sbjct: 195 VHAY-VVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR---- 249
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
TQ GD E ALE+F M + + ++ +++C+ + G++IHG V+
Sbjct: 250 --------TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVM 301
Query: 290 RHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK--- 331
+ + V L+ + G+ +F+ +++I YG G QK
Sbjct: 302 KAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIE 361
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
EG FE+M K Y M+P+++ Y C+VDLL
Sbjct: 362 LFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLL 421
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS---- 407
R+G D+ + MP P C N D+AE A+ + EL+P S
Sbjct: 422 GRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYV 481
Query: 408 ---------------------------------------GKVHSFIAGDTSHSLVHKISE 428
G +H F GD SH +I E
Sbjct: 482 LLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDE 541
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L + ++I++ GY K + HSEKLA+AF +S G P+RV+K
Sbjct: 542 CLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMK 601
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH K +S+ REI++ D RFHHF DG CSC DYW
Sbjct: 602 NLRVCDDCHLAIKLMSQVTG----REIVVRDVSRFHHFKDGRCSCRDYW 646
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFRE----- 232
+D N LM YA L A F +I +++++SWN + GY LGG R+
Sbjct: 74 TDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEM 133
Query: 233 ----------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ G T G E +L FF M + M P+ L V CA ++ G+
Sbjct: 134 PERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGR 193
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
++H YV+R GL V +SL MY RCG +Q+ E
Sbjct: 194 QVHAYVVR----------------SGLDRDMCVGSSLAHMYMRCGCLQEGEA 229
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 153/618 (24%), Positives = 245/618 (39%), Gaps = 199/618 (32%)
Query: 35 LNNLELGIQVHAHLIVCGVELCAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90
+E V + ++ G+ C + G+F+ M +R+ +WT+M+ G E +
Sbjct: 204 FQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEAL 263
Query: 91 NLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140
++F + EGV AC L GK ++ Y+ +E N V ++DM+
Sbjct: 264 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMY 323
Query: 141 IKCGRMEMASGEFEE---------------------------------------KDFS-- 159
KC + +A F DF+
Sbjct: 324 SKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLG 383
Query: 160 -------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
NL+ L+ G + H L L + V+N+L+ Y KC ++ AH F ++
Sbjct: 384 SVISSCANLASLEEGAQFHCLALVSG-LMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
VSW A++ GYA Q+G + ++ F +M+ ++P+ ++ GVL+AC
Sbjct: 443 HDQVSWTALVTGYA------------QFGKAKETIDLFEKMLANGLKPDGVTFIGVLSAC 490
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+ R G ++K
Sbjct: 491 S---------------------------------------------------RAGLVEK- 498
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEP 386
G YF+ M+K++ + P + Y CM+DL +R+G+F + F+K+MP P +
Sbjct: 499 -GCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSS 557
Query: 387 C----NPDIAEHAARHLFELEPLSSG---------------------------------- 408
C N +I + AA +L E +P +
Sbjct: 558 CRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEP 617
Query: 409 ---------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC---------- 449
KVH F A D SH +I EKL L S++ + GY + +
Sbjct: 618 GCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKV 677
Query: 450 ----GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLA+AFGLI P+R++KNLR+C DCH+ TK++SK R+I++ D
Sbjct: 678 HMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITG----RDILVRD 733
Query: 506 NYRFHHFVDGACSCGDYW 523
RFH F DG CSCGD+W
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 115/285 (40%), Gaps = 62/285 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELK 109
+F MPER+ S+ +++ ++ G V L+ L+ E + S L
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
D +G V+ ++ + F A V P++DM+ K G + A F+E +
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT--------- 211
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+++ N+L+ +C+ ++ A F + + ++W M
Sbjct: 212 --------------VVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTM-------- 249
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+TG TQ G AL+ F RM + + + +L AC + + GK+IH Y+
Sbjct: 250 ----VTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYIT 305
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
R + + FV ++L+DMY +C +I+ E
Sbjct: 306 RTWYEDNV----------------FVGSALVDMYSKCRSIRLAEA 334
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 31/181 (17%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
K G+ + + + +L N+L+ A R + F+ + ++ VS+NA+
Sbjct: 60 KSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNAL--- 116
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKE 283
ITGF+ G +++ + +++ + ++P I+LS ++ + + LG
Sbjct: 117 ---------ITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H VLR G G +FV + L+DMY + G I+ + R F+ M+
Sbjct: 168 VHCQVLR----------------LGFGAYAFVGSPLVDMYAKMGLIR--DARRVFQEMEA 209
Query: 344 E 344
+
Sbjct: 210 K 210
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 157/587 (26%), Positives = 240/587 (40%), Gaps = 203/587 (34%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAF----------LGMFEKMP 66
+++ + C L +L+ G VHA ++ V L L +F+ MP
Sbjct: 181 FSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMP 240
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
RNV SW S++ L+ +GV++A + + GK + +++
Sbjct: 241 HRNVVSWNSLIA---------------GLVKKDGVFEAIEAFRIMQ-GKGMGFSWVTLT- 283
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
+ C R ++ L GKEIH + K + D V
Sbjct: 284 -----------TILPVCAR---------------VTALGSGKEIHAV-IVKSTAKPDAPV 316
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
NSL+D YAKC + F+ ++ K L SWN ++ GYA+ G E A
Sbjct: 317 LNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTE------------A 364
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+E F MI + P+ I+ +L+ C+ G+A
Sbjct: 365 MESFQEMICSGFSPDGITFIALLSGCSHA------------------------GLA---- 396
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++G R FEMMK +Y + P +E Y C+VD+L RAG+
Sbjct: 397 -------------------------DDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGR 431
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------- 408
+ L +K MPF+P+ + C N +AE A+ LFELEP ++G
Sbjct: 432 IKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNI 491
Query: 409 -----------------------------------KVHSFIAGDTS---HSLVHKISEKL 430
K+H+F+AG ++ +S+ +K K
Sbjct: 492 YANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWK- 550
Query: 431 MRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
RL ++++GY M+ + CGHSE+LA F LI+T+ G P+R+ KNL
Sbjct: 551 -RLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNL 609
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCHS K +SK R I++ D RFHHF DG CSC DYW
Sbjct: 610 RVCVDCHSWVKTLSKVTG----RVIVLRDTNRFHHFKDGVCSCKDYW 652
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 162/606 (26%), Positives = 258/606 (42%), Gaps = 168/606 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+++ E++ SWT+MM Y GY++ L EG+ D + Y+
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELL-----EGM--------DDNMKLVAYNA 256
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASG-EFEEKDFSNL-------SLLKHGKEIHP 172
MIS V R ++ R ++SG E +E + ++ LL+ GK++H
Sbjct: 257 MIS------GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--- 229
+ L+++D +NSL+ Y KC A F K+ K LVSWNA+L+GY G
Sbjct: 311 YVLRREDFS--FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368
Query: 230 -----FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
F+E I+G + G GE L+ FS M + +P + SG + +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-----------QGLGT----GSFVWNS 318
+ + G++ H +L+ S G ALI++ Q T S WN+
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488
Query: 319 LIDMYGRCG---------------------------------AIQKNEGWRYFEMMKKEY 345
LI G+ G A ++G +YF+ M+ Y
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHA 395
+ P + Y ++DLL R+G+F D + ++ +PF+P++ C N ++ A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
A LF L P G +VH+
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLAL 457
F+ DTSH + L L E++++GY+ K HSEK+A+
Sbjct: 669 FLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAV 728
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFGL+ PG+ +R+ KNLR CGDCH+ +++S +R+II+ D RFHHF +G C
Sbjct: 729 AFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVV----QRDIILRDRKRFHHFRNGEC 784
Query: 518 SCGDYW 523
SCG++W
Sbjct: 785 SCGNFW 790
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 186 VNNSLMDFYAKC----RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF---REE----- 233
V+N+L+ Y+KC L A F +I +K SW M+ GY G+ EE
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245
Query: 234 ------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+G+ G + ALE RM+ + ++ + + V+ ACA +LG
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305
Query: 282 KEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRC 326
K++H YVLR S +L+S+ + + V WN+L+ Y
Sbjct: 306 KQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSS 364
Query: 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF---MKKMPFEP 381
G I E F+ MK E + + M+ LA G ++ L MK+ FEP
Sbjct: 365 GHI--GEAKLIFKEMK-----EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEP 415
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N L+D Y K L A F +I + ++ M++GY G
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIH 285
+ ITGF+ DG +A+ F +M +P+ + + VLA A V K + H
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172
Query: 286 GYVLRHHIQLSTGVGIALISI 306
L+ T V AL+S+
Sbjct: 173 AAALKSGAGYITSVSNALVSV 193
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 154/641 (24%), Positives = 263/641 (41%), Gaps = 187/641 (29%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG------------MFEKMPE 67
+ QRC + L Q+H ++ G+ +L AF +F+++
Sbjct: 24 LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDV 117
N F W +M+ Y+ EE + L++ ++ V KACS + + +
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ ++I + F +L+++ K G ++ A F++ D
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD-------------------- 180
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ D + NS++D Y KC +++A+ F+ + +++++SW +M++G G +E
Sbjct: 181 ---QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKE---- 233
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL F RM ++ + ++L L ACA + GK IH Y+ +H I++
Sbjct: 234 --------ALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDP 285
Query: 298 GVGIALISIQGL---------------GTGSFVWNSLIDMYG---------------RCG 327
+G LI + G VW ++I Y +
Sbjct: 286 ILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTA 345
Query: 328 AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ N E FE M++ + +P++E Y CMVDLL RAG +
Sbjct: 346 GVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKE 405
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS---- 407
++ MP +P++A C N ++ + + L +++P L+S
Sbjct: 406 AEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAA 465
Query: 408 -------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSE 436
G H F+AGD SH + +I L ++
Sbjct: 466 AGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVER 525
Query: 437 IKKIGYMKRIPACG--------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+++ GY ++ HSEKLA+ FGLIST PG +R++KNLR+C DC
Sbjct: 526 LREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDC 585
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K +SK REI+M D RFH F DG C+CGDYW
Sbjct: 586 HTVIKLISKV----YAREILMRDRTRFHLFKDGNCTCGDYW 622
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 157/579 (27%), Positives = 235/579 (40%), Gaps = 175/579 (30%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
G+F+ M R+ SW+ M+G + +G Y F LI R G +
Sbjct: 791 GLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELI--------------RCGARPDN 836
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
Y ++ F AC +D NL + G+ IH H + K
Sbjct: 837 Y--TLPFVIRAC------------------------RDLKNLQM---GRLIH-HIVYKFG 866
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D V +L+D Y KCR ++ A F K+ ++ LV+W M+ GYA +
Sbjct: 867 LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYA------------E 914
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G+ +L F +M + + P+ +++ V+ ACA++ + I Y+ R QL +
Sbjct: 915 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 974
Query: 300 GIALISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------- 331
G A+I + W+++I YG G +K
Sbjct: 975 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 1034
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
EG R+F M ++Y++ ++ Y C+VDLL RAG+ D+ L
Sbjct: 1035 LPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEAL 1094
Query: 372 NFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG------------- 408
+ M E A + D+ AE AA L EL+P + G
Sbjct: 1095 KLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAG 1154
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F GDT+H +I E L L ++++
Sbjct: 1155 RWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLE 1214
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+GY+ HSEKLA+AFGLI+T +P+R+IKNLR+CGDCH+
Sbjct: 1215 LVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHT 1274
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VS R II+ D RFHHF +GACSCGDYW
Sbjct: 1275 FCKLVSAITG----RVIIVRDANRFHHFKEGACSCGDYW 1309
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 131/533 (24%), Positives = 205/533 (38%), Gaps = 171/533 (32%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
G+F+ M R+ SW+ M+G + +G Y F LI R G +
Sbjct: 115 GLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELI--------------RCGARPDN 160
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
Y ++ F AC +D NL + G+ IH H + K
Sbjct: 161 Y--TLPFVIRAC------------------------RDLKNLQM---GRLIH-HIVYKFG 190
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D V +L+D Y KCR ++ A F K++++ LV+W M+ GYA +
Sbjct: 191 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA------------E 238
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G +L F +M + + P+ +++ V+ ACA++ + I Y+ R QL +
Sbjct: 239 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 298
Query: 300 GIALISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------- 331
G A+I + W+++I YG G +K
Sbjct: 299 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGM 358
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
EG R+F M ++Y++ ++ Y C+VDLL RAG+ D+ L
Sbjct: 359 LPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEAL 418
Query: 372 NFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG------------- 408
+K M E A + D+ AE AA L EL+ + G
Sbjct: 419 KLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAG 478
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
K H F GDT+H +I E L L ++++
Sbjct: 479 RWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLE 538
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLR 477
+GY+ HSEKLA+AFGLI+T +P+R+IKNLR
Sbjct: 539 LVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 35/195 (17%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L+V N L+ FY+ R L A+ F + + VSW+ M+ G+A + GD
Sbjct: 769 NLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA------------KVGD 816
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
F +I+ +P+ +L V+ AC +K ++G+ IH V +
Sbjct: 817 YMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF----------- 865
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
GL FV +L+DMYG+C I+ + F+ M E + + M+ A
Sbjct: 866 -----GLDLDHFVCAALVDMYGKCREIE--DARFLFDKM-----XERDLVTWTVMIGGYA 913
Query: 363 RAGQFDDTLNFMKKM 377
G +++L KM
Sbjct: 914 ECGNANESLVLFDKM 928
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 36/218 (16%)
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
N L +++H LE +++V N L+ FY+ R L A+ F + + VSW+
Sbjct: 71 NCRNLTQVRQVHAQASVHGMLE-NIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWS 129
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
M+ G+A + GD F +I+ +P+ +L V+ AC +K +
Sbjct: 130 VMVGGFA------------KVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ 177
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+G+ IH V + GL FV +L+DMY +C I+ + F+
Sbjct: 178 MGRLIHHIVYKF----------------GLDLDHFVCAALVDMYVKCREIE--DARFLFD 219
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
M+ E + + M+ A G+ +++L +KM
Sbjct: 220 KMQ-----ERDLVTWTVMIGGYAECGKANESLVLFEKM 252
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 152/588 (25%), Positives = 246/588 (41%), Gaps = 206/588 (35%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++MP+RNV SWT+M+ Y+ +++ + L L++ +GV +AC+ + D
Sbjct: 70 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSD 129
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
R+ ++ +I E + V+ ++D+F K G E A F+E
Sbjct: 130 VRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGG 186
Query: 156 ---------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ + L+LL+ G + H H +K D
Sbjct: 187 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD---Q 243
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL++NN+L+D Y KC L+ A F+++K++ +++W+ M++G A G+ +E
Sbjct: 244 DLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQE--------- 294
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F M + +PN I++ GVL AC+ H L
Sbjct: 295 ---ALKLFELMKSSGTKPNYITIVGVLFACS------------------HAGL------- 326
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L G + + S+ +YG + P E Y CM+DLL
Sbjct: 327 ------LEDGWYYFRSMKKLYG----------------------INPGREHYGCMIDLLG 358
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG---- 408
+AG+ DD + + +M EP + C N +AE+AA+ + L+P +G
Sbjct: 359 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTV 418
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H+FI GD SH + ++++K
Sbjct: 419 LSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKK 478
Query: 430 LMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRV 472
L +L + IGY +P HSEKLALAFGL++ +R+
Sbjct: 479 LNQLIHRLIGIGY---VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRI 535
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
KNLR+CGDCH K SK E R I++ D R+HHF DG CSCG
Sbjct: 536 RKNLRICGDCHVFCKLASKLEN----RNIVIRDPIRYHHFQDGKCSCG 579
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ Y K L AH F ++ Q++++SW M++ Y+ ++ AL
Sbjct: 52 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK------------AL 99
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL--------GKEIHGYVLRHHIQLSTGV 299
E M++ ++PN + S VL AC + ++ G E YV I + +
Sbjct: 100 ELLVLMLRDGVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKL 159
Query: 300 G---IALISIQGLGTG-SFVWNSLIDMYGR 325
G AL + TG + VWNS+I + +
Sbjct: 160 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 189
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C L LELG+Q H H++ +L C L +F +M E
Sbjct: 214 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKE 273
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
R+V +W++M+ GY +E + LF L+ G
Sbjct: 274 RDVITWSTMISGLAQNGYSQEALKLFELMKSSGT 307
>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
Length = 708
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 232/589 (39%), Gaps = 152/589 (25%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A +FE++P RNV SW + G Y I G +L D
Sbjct: 153 DLTAARELFERIPRRNVMSWNILFGGY----------------IKNGDLGGARKLFDEMP 196
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKE 169
++V + + N L F+ R M EF + L + G++
Sbjct: 197 ERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQ 256
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H + + + L+ D+ V +SL Y +C L+ + +VS N ++AG
Sbjct: 257 VHAY-VVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGR---- 311
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
TQ GD E ALE+F M + + ++ +++C+ + G++IHG V+
Sbjct: 312 --------TQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVM 363
Query: 290 RHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK--- 331
+ + V L+ + G+ +F+ +++I YG G QK
Sbjct: 364 KAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIE 423
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
EG FE+M K Y M+P+++ Y C+VDLL
Sbjct: 424 LFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLL 483
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS---- 407
R+G D+ + MP P C N D+AE A+ + EL+P S
Sbjct: 484 GRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYV 543
Query: 408 ---------------------------------------GKVHSFIAGDTSHSLVHKISE 428
G +H F GD SH +I E
Sbjct: 544 LLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDE 603
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L + ++I++ GY K + HSEKLA+AF +S G P+RV+K
Sbjct: 604 CLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMK 663
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH K +S+ REI++ D RFHHF DG CSC DYW
Sbjct: 664 NLRVCDDCHLAIKLMSQVTG----REIVVRDVSRFHHFKDGRCSCRDYW 708
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFRE----- 232
+D N LM YA L A F +I +++++SWN + GY LGG R+
Sbjct: 136 TDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEM 195
Query: 233 ----------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+ G T G E +L FF M + M P+ L V CA ++ G+
Sbjct: 196 PERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGR 255
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
++H YV+R GL V +SL MY RCG +Q+ E
Sbjct: 256 QVHAYVVR----------------SGLDRDMCVGSSLAHMYMRCGCLQEGEA 291
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 139/485 (28%), Positives = 207/485 (42%), Gaps = 139/485 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK--IKQKHLV 216
+ L L+ G+ +H K+ + + V NSL+ Y C + AH F + ++ ++LV
Sbjct: 127 ARLLALREGECLHAE-AAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGRNLV 185
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN+ML +A G E+ L F M+ D P+ ++ VL ACA+
Sbjct: 186 SWNSMLNSFAANGRPNEV------------LTVFWEMLGVDFAPDGFTIVSVLTACAEFG 233
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI----------------QGLGTGSFVWNSLI 320
LG+ +H YV + + ++ V ALI + GLG W SLI
Sbjct: 234 ALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLI 293
Query: 321 -----DMYGR------------------------------CGAIQKNEGWRYFEMMKKEY 345
+ +G+ CG + ++G+RYF+ MK++Y
Sbjct: 294 VGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLV--DDGFRYFDRMKEDY 351
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHA 395
+ P +E CMVDLL RAG+ ++ +++ MP EP S A ++ + A
Sbjct: 352 GISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVA 411
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
L EL+P SG V+
Sbjct: 412 WERLVELDPGHSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYE 471
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALA 458
F+ GD SH +I E L + +++ GY+ R HSE+LA+A
Sbjct: 472 FVMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIA 531
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ + PG P+R+IKNLRMCGDCH +SK +REII+ D RFHHF GACS
Sbjct: 532 FALLKSLPGIPIRIIKNLRMCGDCHVAFNLISKVY----DREIIVRDRSRFHHFQGGACS 587
Query: 519 CGDYW 523
C DYW
Sbjct: 588 CKDYW 592
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 156/568 (27%), Positives = 236/568 (41%), Gaps = 190/568 (33%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
L+F++ P+ + + I V A L G ++ G F +MP +NV SWTSM+ + G
Sbjct: 66 LLFEKMPQRDAVTWNI-VIAQLAKRG-DIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKP 123
Query: 87 EEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP----VLDMFIK 142
E ++LF L DE V RP V+ +
Sbjct: 124 NEAIDLFMKLEDEAV--------------------------------RPNEVTVVSVLAA 151
Query: 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV 202
C D +L L G+ +H + K + ++ V N+L+D Y KC L+
Sbjct: 152 CA------------DLGDLDL---GRIVHEYS-TKSGFKRNVHVCNTLIDMYVKCGCLEN 195
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262
A F +++++ +VSW+AM+AG A+ +G E AL FS MI+ ++PN
Sbjct: 196 ARRVFYEMEERTVVSWSAMIAGLAM------------HGQAEEALCLFSEMIKLGVKPNG 243
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
++ G+L AC+ + LID
Sbjct: 244 VTFIGLLHACSHM------------------------------------------GLID- 260
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
EG R+F M +Y + P +E Y C+VDL +RAG ++ F+ MP +P+
Sbjct: 261 ----------EGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPN 310
Query: 383 SA------EPC----NPDIAEHAARHLFELEPLS-------------------------- 406
C N D+AE A +HL EL+PL+
Sbjct: 311 GVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKL 370
Query: 407 -----------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC 449
+G VH F+AGD +H I + +L ++K+ GY +
Sbjct: 371 MKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVV 430
Query: 450 --------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
HSEKLA+ FGL++T G+P+R++KNLR+C DCH+ K +S
Sbjct: 431 LLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIV-- 488
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFH F DG CSC D+W
Sbjct: 489 --SREIIVRDRNRFHCFRDGQCSCRDFW 514
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
D+ P+T + S VL AC ++ GK IHG L G G+ F+
Sbjct: 5 DVLPDTFTCSFVLKACLKLSDVVNGKTIHG----------------LFQKLGFGSNLFLQ 48
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
N ++++YG CG + + FE M + + + ++ LA+ G D F +
Sbjct: 49 NMILNLYGLCG--EMGDAMLLFEKMPQRDAV-----TWNIVIAQLAKRGDIDGAYGFFLR 101
Query: 377 MP 378
MP
Sbjct: 102 MP 103
>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Brachypodium distachyon]
Length = 861
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 169/643 (26%), Positives = 251/643 (39%), Gaps = 193/643 (30%)
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVY 118
++ +W +M+ + G EE V + Y ++ GV ACS L+ VG++V+
Sbjct: 224 DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVH 283
Query: 119 DYMI-SIKFEGNACVKRPVLDMFIK----------------------------CG----- 144
+++ N+ V ++DM+ CG
Sbjct: 284 AFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG 343
Query: 145 -----------RMEMASG-EFEEKDFSNL------SLLKHGKEIHPHHLKKDDLESDLLV 186
RME +G E + + S + GKE ++ K D+ S+ V
Sbjct: 344 GMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFV 403
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF-------TQ 239
N+LMD YA+ + AH F+ I + +VSWN ++ G + G E +
Sbjct: 404 QNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSS 463
Query: 240 YGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
GET LE + PN I+L +L CA + GKEIHGY +RH ++
Sbjct: 464 AASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLA 523
Query: 299 VGIALISIQ------GLGTGSF---------VWNSLIDMYG----------------RCG 327
VG AL+ + L F WN LI YG G
Sbjct: 524 VGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANG 583
Query: 328 AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
NE G F+ MK++Y EP + C+VD+L RAG+ D+
Sbjct: 584 EATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDE 643
Query: 370 TLNFMKKM-PFEPSSAE------PC----NPDIAEHAARHLFELEPLSS----------- 407
+ M P E + C N + AA LFELEP +
Sbjct: 644 AYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYS 703
Query: 408 --------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYS 435
G +H F+AG+++H ++ + L+
Sbjct: 704 AAGLWENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWE 763
Query: 436 EIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+++ GY+ +C HSEKLA+AFGL+ PG+ +RV KNLR+C
Sbjct: 764 RMRREGYVPDT-SCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCN 822
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K++S R REI++ D RFHHF DG CSCGDYW
Sbjct: 823 DCHEAAKFIS----RMVGREIVLRDVRRFHHFRDGTCSCGDYW 861
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 131/288 (45%), Gaps = 50/288 (17%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-Y 118
G +K ER F + +++ MY LG ++ LF+ G VG V +
Sbjct: 184 GFLDKGRER--FPFNALLSMYARLGLVDDAQRLFF---SSGAG----------VGDLVTW 228
Query: 119 DYMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
+ MIS+ +G C + + DM R + + S L LL G+E+H LK
Sbjct: 229 NTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLK 288
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEI 234
DDL ++ V ++L+D YA + A F + + + L WNAM+ GYA G
Sbjct: 289 DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHG----- 343
Query: 235 TGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
G E A+E FSRM + P+ +++GVL ACA+ + F + +HGYV++
Sbjct: 344 ------GMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVK--- 394
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+ + + FV N+L+DMY R G + +E F M+
Sbjct: 395 -------------RDMASNRFVQNALMDMYARLG--RMDEAHTIFAMI 427
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 127/299 (42%), Gaps = 44/299 (14%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKC--RYLKVAHCKFSKIKQ 212
K + L + + IH L++ L V+N+L+ YA+C +A +
Sbjct: 56 KSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDL 115
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ VS+N++++ L F ++G AL R + D + ++ +L VL AC
Sbjct: 116 RDAVSYNSLISALCL---------FRRWGHALDAL----RDMLADHEVSSFTLVSVLLAC 162
Query: 273 AQV--KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ + +G +LG+E H + L+H G F +N+L+ MY R G +
Sbjct: 163 SHLADQGHRLGREAHAFALKH-------------GFLDKGRERFPFNALLSMYARLGLV- 208
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
++ R F + + M+ LL + G+ ++ + + M A PD
Sbjct: 209 -DDAQRLFFSSGAGVG---DLVTWNTMISLLVQGGRCEEAVQVLYDM-----VALGVRPD 259
Query: 391 IAEHAAR--HLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
A+ LE L G+ VH+F+ D + ++ L+ +Y+ +++ + +R+
Sbjct: 260 GVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRV 318
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 160/612 (26%), Positives = 253/612 (41%), Gaps = 189/612 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL-------------------I 49
L Q M+ N +T + C K ++ E G VH+++
Sbjct: 224 LFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYT 283
Query: 50 VCG-VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------- 101
CG VE L F+KMPE+++ SWT+M+ Y +G Y+ +F + ++ +
Sbjct: 284 KCGSVEDAKRL--FDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALI 341
Query: 102 --YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
Y+ C + K+ + ++ +S + + L + G M++
Sbjct: 342 SAYEQCGKPKE--ALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL----------- 388
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
G IH ++KK ++ + + SL+D Y KC L+ A F +++K + W+
Sbjct: 389 -------GGWIHV-YIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 440
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
AM+AG A+ +G G+ A+ FS+M + ++PN ++ + +L AC+ V +
Sbjct: 441 AMIAGLAM------------HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVE 488
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
G+ +N + +YG ++
Sbjct: 489 EGRTF-------------------------------FNQMELVYGVLPGVK--------- 508
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
Y CMVD+L RAG ++ + ++KMP P+++ C N
Sbjct: 509 -------------HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENV 555
Query: 390 DIAEHAARHLFELEP--------LSS---------------------------------- 407
+AE A L ELEP LS+
Sbjct: 556 VLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615
Query: 408 -GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGH 451
G VH F+ GD SH KI KL + + ++ IGY +K H
Sbjct: 616 DGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLH 675
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFGLIST P+R++KNLR+CGDCHS K VSK +REI++ D YRFHH
Sbjct: 676 SEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKL----YDREILLRDRYRFHH 731
Query: 512 FVDGACSCGDYW 523
F +G CSC DYW
Sbjct: 732 FREGHCSCMDYW 743
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K S L L GK H +K L SD+ + NSL+ FYAKC L + + F I +
Sbjct: 141 FLIKAASELEELFTGKAFHGMVIKVL-LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPR 199
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ +VSWN+M IT F Q G E ALE F M +++PN I++ GVL+AC
Sbjct: 200 RDVVSWNSM------------ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC 247
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
A+ F+ G+ +H Y+ R+ I G + N+++DMY +CG+++
Sbjct: 248 AKKSDFEFGRWVHSYIERNRI----------------GESLTLSNAMLDMYTKCGSVE-- 289
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ R F+ M E + + M+ A+ G++D MP + +A
Sbjct: 290 DAKRLFDKMP-----EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA 336
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 122/291 (41%), Gaps = 66/291 (22%)
Query: 56 CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
C LG+ F +P R+V SW SM+ + G EE + LF + + GV
Sbjct: 184 CGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGV 243
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
AC++ D G+ V+ Y+ + + + +LDM+ KCG +E A F++
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMP---- 299
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E D++ +++ YAK A F + + + +WNA+
Sbjct: 300 -------------------EKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNAL 340
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKL 280
++ Y Q G + ALE F + + +P+ ++L L+ACAQ+ L
Sbjct: 341 ISAY------------EQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
G IH Y+ + QG+ + SLIDMY +CG +QK
Sbjct: 389 GGWIHVYIKK----------------QGMKLNCHLTTSLIDMYCKCGDLQK 423
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 72/179 (40%), Gaps = 38/179 (21%)
Query: 165 KHGKEIHPHHLKK----DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
K K+IH L+ D + L+ + + + Y A F +I +L +WN
Sbjct: 49 KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDY---AQQVFDQIPHPNLYTWNT 105
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFK 279
++ YA + +L F RM+ Q+ P+ + ++ A ++++
Sbjct: 106 LIRAYA------------SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELF 153
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
GK HG V++ LG+ F+ NSLI Y +CG + G+R F
Sbjct: 154 TGKAFHGMVIK----------------VLLGSDVFILNSLIHFYAKCGEL--GLGYRVF 194
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 166/632 (26%), Positives = 254/632 (40%), Gaps = 202/632 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------------------MFEK 64
TY+ I C + L+LG Q+H+ +++ G+E +G F
Sbjct: 319 TYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRG 378
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHRVG 114
+ NV SWTS++ ++ G EE + +F + GV AC +K
Sbjct: 379 IASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQT 438
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------S 150
+ ++ Y+I + + V ++D + G ++ A +
Sbjct: 439 RKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQT 498
Query: 151 GEFE---------EKD------FS---------NLSLLKHGKEIHPHHLKKDDLESDLLV 186
G E KD FS + +++ GK++H + +K L S + V
Sbjct: 499 GNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSG-LGSWISV 557
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+N L+D Y KC + AH F +I + VSWN + I G G +A
Sbjct: 558 SNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGL------------IFGLASNGHVSSA 605
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L F M ++P+ I+ VL AC+ HG
Sbjct: 606 LSAFEDMRLAGVEPDQITCLLVLYACS-----------HG-------------------- 634
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
L+DM G YF+ M++++ + P ++ Y C+VDLL RAG+
Sbjct: 635 -----------GLVDM-----------GLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGR 672
Query: 367 FDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEPL----------- 405
++ +N ++ MPF+P + C N + EH AR EL+P
Sbjct: 673 LEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANL 732
Query: 406 --SSGK------------------------------VHSFIAGDTSHSLVHKISEKLMRL 433
SG+ VH F AGDTSH + KI EK+ L
Sbjct: 733 YDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESL 792
Query: 434 YSEIKKIG--YMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
++ + G Y + HSEKLA+AFGLIST P +P+R+IKN+R+C DCH V+
Sbjct: 793 IAQFRNQGIWYQENRALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVT- 851
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R +REII+ D RFH F G CSC YW
Sbjct: 852 ---RLVDREIIVRDGNRFHSFKKGECSCRGYW 880
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/436 (22%), Positives = 172/436 (39%), Gaps = 114/436 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E T++ AL + C L G + A + G + LG
Sbjct: 114 PNEFTLSTAL--RSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAY 171
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---------ACSELKD 110
+FE M ++ SWT M+ + G + + + L++ +I GV A S
Sbjct: 172 RVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG 231
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA-------------------SG 151
GK V+ +++ + E N +K ++DM+ KC +E A SG
Sbjct: 232 LNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISG 291
Query: 152 EFEEKDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
+ F S++ L GK+IH + LE+
Sbjct: 292 FTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMA-GLEN 350
Query: 183 DLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ V NSL+D Y KC ++ A F I +++SW +++A GF+++G
Sbjct: 351 DVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA------------GFSEHG 398
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
E +++ F M ++PN+ +LS +L AC +K +++HGY+++++ VG
Sbjct: 399 LEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVG- 457
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
N+L+D Y G + ++ W MMK + Y + +
Sbjct: 458 ---------------NALVDAYAGLGMV--DDAWHVTSMMKHR-----DVITYTSLATRI 495
Query: 362 ARAGQFDDTLNFMKKM 377
+ G + LN + M
Sbjct: 496 NQTGNHEMALNIITHM 511
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 137/325 (42%), Gaps = 90/325 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F++MP R+V SWT +M Y +G +EE + LF ++ G Y ++CS L++
Sbjct: 72 LFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALRE 131
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
G + F+ N + ++D + KCG + A FE
Sbjct: 132 FNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSS 191
Query: 155 -----------------------EKDFSNLSLL--------KHGKEIHPHHLKKDDLESD 183
+F+ + LL +GK +H H L +E +
Sbjct: 192 FVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAH-LMMWRIELN 250
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV-SWNAMLAGYALG-GFREEITGFTQYG 241
L++ +L+D Y KC+ ++ A K SK+ ++ V W A+++G+ FRE IT F +
Sbjct: 251 LVLKTALVDMYCKCQSIEDA-VKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHE-- 307
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
M + + PN + SG+L AC+ + LGK+IH V+ ++ VG
Sbjct: 308 -----------METSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVG- 355
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRC 326
NSL+DMY +C
Sbjct: 356 ---------------NSLVDMYMKC 365
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 36/220 (16%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F N ++ G IH +K + D+ ++N+L+ Y KC + A F ++ + + S
Sbjct: 25 FCNSRSVRDGICIHSPIIKMG-FQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVAS 83
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W +++ Y + G+ E ALE F M+ + PN +LS L +C+ ++
Sbjct: 84 WTMLMSAYG------------KIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALRE 131
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
F G AL++ G + + ++LID Y +CG Q E +R
Sbjct: 132 FNHGTRFQ----------------ALVTKSGFDSNPVLGSALIDFYSKCGCTQ--EAYRV 173
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
FE M + + MV AG + L +M
Sbjct: 174 FEYMNN-----GDIVSWTMMVSSFVEAGSWSQALQLYHRM 208
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 168/636 (26%), Positives = 258/636 (40%), Gaps = 190/636 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ + C L ++ G Q H V G + F+ +F+++
Sbjct: 78 SFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI 137
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+RN+ SWTSM+ Y++ G + V+LF KD V ++ D + +
Sbjct: 138 PKRNIVSWTSMIRGYDLNGNALDAVSLF---------------KDLLVDENDDDDAMFLD 182
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G ++ + C R+ A G E IH +K+ + +
Sbjct: 183 SMG-------LVSVISACSRVP-AKGLTES--------------IHSFVIKRG-FDRGVS 219
Query: 186 VNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+D YAK + VA F +I K VS+N++++ YA G E
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE---------- 269
Query: 244 ETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A E F R+++ + N I+LS VL A + ++GK IH V+R ++ VG +
Sbjct: 270 --AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327
Query: 303 LISI---------------QGLGTGSFVWNSLIDMYGRCGAIQKN--------------- 332
+I + + W ++I YG G K
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EGWR+F MK + +EP +E Y CMVDLL RAG + +
Sbjct: 388 YITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
++M +P S C N ++AE + LFEL+ +
Sbjct: 448 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWK 507
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+G+VH F+ GD H KI E L L ++ + G
Sbjct: 508 DVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAG 567
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K + HSEKLA+AFG+++T PGS + V+KNLR+C DCH+ K
Sbjct: 568 YVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIK 627
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +RE ++ D RFHHF DG CSCGDYW
Sbjct: 628 LISKIV----DREFVVRDAKRFHHFKDGGCSCGDYW 659
>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
Length = 1058
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 173/641 (26%), Positives = 257/641 (40%), Gaps = 204/641 (31%)
Query: 24 TYALI--FQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLG----MFE 63
+ALI C L L G QVH + G++L C + +F
Sbjct: 481 NFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFN 540
Query: 64 KMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
M E + SW +MMG M + EIV +F ++ G+
Sbjct: 541 SMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLI-------------------- 580
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
P FI +A+ S LS+L+ GK++H +K +E
Sbjct: 581 ------------PNKVTFINL----LAA-------LSPLSVLELGKQVHAAVMKHGVME- 616
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D +V+N+L+ YAK + F+ + ++ +SWN+M++GY G +E
Sbjct: 617 DNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQE-------- 668
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A++ MI + + + S +L ACA V + G E+H + +R H++ V
Sbjct: 669 ----AMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVES 724
Query: 302 ALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK--------------- 331
AL+ + F WNS+I Y R G +K
Sbjct: 725 ALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESP 784
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
G YFEMM ++ + P +E Y C++DLL RAG+ D +
Sbjct: 785 DHVTFVSVLSACSHAGLVERGLEYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEY 843
Query: 374 MKKMPFEPS-------------SAEPCNPDIAEHAARHLFELEP---------------- 404
+++MP EP+ S + N D+ A+R L E+EP
Sbjct: 844 IQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAAT 903
Query: 405 ----------------------------LSSGKVHSFIAGDTSHSLVHKISEKLMRLYSE 436
L+ G VH+FIAGD SH +I EKL L
Sbjct: 904 GMWEDTAKARTAMRQATEKKEAGRSWVTLNDG-VHTFIAGDRSHPNTKEIYEKLNFLIQN 962
Query: 437 IKKIGYMK--------------RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
I+ GY+ HSEKLA+AF L +S G P+R++KNLR+CGDC
Sbjct: 963 IRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSG-PIRIMKNLRVCGDC 1021
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H +Y+S+ R+ II+ D+ RFHHF DG CSCGDYW
Sbjct: 1022 HIAFRYISQMISRQ----IILRDSIRFHHFKDGKCSCGDYW 1058
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+ +H H L+ + + V+N L++ YAKC ++ A F ++ +SWN +
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTI-- 452
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
I+ Q G+ E A+ +S M Q+ + P+ +L L++CA +K G++
Sbjct: 453 ----------ISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQ 502
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H ++ + L T V N L+ MYG CGA+ ++ W+ F M +
Sbjct: 503 VHCDAVKWGLDLDTSVS----------------NVLVKMYGECGAM--SDYWKVFNSMAE 544
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 39/196 (19%)
Query: 161 LSLLKHGKEIH-PHHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
L LL+ G + + P +L K L DL + N L++ YAK L A F ++ +++
Sbjct: 68 LPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNA 127
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM---IQTDMQPNTISLSGVLAAC 272
VSW +++GY L G EE A F M +Q +P + + +L AC
Sbjct: 128 VSWTCLVSGYVLHGIAEE------------AFRVFRAMLREVQAGCRPTSFTFGTLLRAC 175
Query: 273 AQVKGFKLG--KEIHGYVLRHHIQLSTGVGIALISIQGLGTGS----------------- 313
+LG ++HG V + +T V ALIS+ G T
Sbjct: 176 QDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDL 235
Query: 314 FVWNSLIDMYGRCGAI 329
WN+L+ +Y + G +
Sbjct: 236 ITWNALMSVYAKKGDV 251
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 127/304 (41%), Gaps = 53/304 (17%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEK 64
VT+ + L+ LELG QVHA ++ GV ++ + +F
Sbjct: 584 VTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTN 643
Query: 65 MPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
M +R + SW SM+ Y G +E ++ +L+I G + AC+ +
Sbjct: 644 MSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALER 703
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----EEKDFSNLSLLKHGKE 169
G +++ + I E + V+ ++DM+ KCGR++ AS F + +FS S++ G
Sbjct: 704 GMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMIS-GYA 762
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
H K ++ ++L + D L C + + ++ L + M+ + G
Sbjct: 763 RHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSA--CSHAGLVERGL-EYFEMMPDH---G 816
Query: 230 FREEITGFT-------QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK---GFK 279
+I ++ + G + E+ RM ++PN + VL AC Q K
Sbjct: 817 ILPQIEHYSCVIDLLGRAGKIDKIKEYIQRM---PIEPNALIWRTVLVACRQSKDGSNID 873
Query: 280 LGKE 283
LG+E
Sbjct: 874 LGRE 877
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/354 (20%), Positives = 136/354 (38%), Gaps = 83/354 (23%)
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------------ 99
G L A +F++MPERN SWT ++ Y + G EE +F ++ E
Sbjct: 109 GARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTF 168
Query: 100 -GVYKACSELKDHRVG--KDVYDYMISIKFEGNACVKRPVLDMFIKC--GRMEMASGEFE 154
+ +AC + R+G V+ + ++ N V ++ M+ C G +A F+
Sbjct: 169 GTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFD 228
Query: 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212
+L ++ KK D+ S + + ++ + H S I
Sbjct: 229 GTPIRDLITWNALMSVYA---KKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAAS 285
Query: 213 ---------KHLVSW-------------NAMLAGYALGGFREE----------------- 233
++ W +A+++ +A G +E
Sbjct: 286 LSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLN 345
Query: 234 --ITGFTQYGDGETALEFFSRMIQT-DMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYV 288
I G + E A++ F T D+ +T + LS + +G ++G+ +HG++
Sbjct: 346 GLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHM 405
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
LR TG+ I++ N L++MY +CGAI+ + F++M+
Sbjct: 406 LR------TGLTDLKIAVS---------NGLVNMYAKCGAIESAS--KIFQLME 442
>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
gi|194695290|gb|ACF81729.1| unknown [Zea mays]
Length = 539
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 145/578 (25%), Positives = 228/578 (39%), Gaps = 175/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP RNV +W +M+ G EE + F+ + EG+ D Y
Sbjct: 22 LFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQP------------DEYG- 68
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
L +C + L + G+++H + + + L
Sbjct: 69 ----------------LGSLFRC--------------CAGLRDVVSGRQVHAY-VVRSGL 97
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V +SL Y +C +L+ + ++VS N I+G TQ
Sbjct: 98 DRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTT------------ISGRTQN 145
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
GD E ALEFF M ++ N ++ + +C+ + G++IH ++ + V
Sbjct: 146 GDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVM 205
Query: 301 IALI---------------SIQGLGTGSFVWNSLIDMYGRCGAIQK-------------- 331
+L+ ++ GT + +++I YG G QK
Sbjct: 206 TSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAE 265
Query: 332 -------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+EG FE+M K Y ++P+++ Y C+VDLL R+G ++ +
Sbjct: 266 PNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAED 325
Query: 373 FMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSS--------------- 407
+ MP +P C D+AE A + EL+P S
Sbjct: 326 LILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSR 385
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
G++H F GD SHS +I E L + + I++
Sbjct: 386 WEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQ 445
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY K + HSEKLA+AF +S G P+RV+KNLR+C DCH
Sbjct: 446 CGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVA 505
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK REI++ D RFHHF DG CSCGDYW
Sbjct: 506 IKLMSKVIG----REIVVRDVSRFHHFKDGKCSCGDYW 539
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 105/279 (37%), Gaps = 42/279 (15%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L+ Y K L+ A F ++ +++ +WNAM+AG G EE GF
Sbjct: 4 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGF---------- 53
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
FF+ M + MQP+ L + CA ++ G+++H YV+R
Sbjct: 54 -FFA-MRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVR----------------S 95
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA--G 365
GL V +SL MY RCG ++ E P++ C + R G
Sbjct: 96 GLDRDMCVGSSLAHMYMRCGFLRDGEA---------ALRALPSLNIVSCNTTISGRTQNG 146
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHK 425
+ L F M A N A +L L+ G+ +A T V
Sbjct: 147 DAEGALEFFCLMRGAGVEA---NAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVP 203
Query: 426 ISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLIST 464
+ L+ +YS +G +R+ L L +IS
Sbjct: 204 VMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISA 242
>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 751
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 178/698 (25%), Positives = 269/698 (38%), Gaps = 217/698 (31%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
T T A + Q + L G Q+HA LI G FL +F+
Sbjct: 75 TKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFD 134
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
KM +RN+ SWTS++ + ++E ++ F + EG V +AC+ L +
Sbjct: 135 KMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQF 194
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------------ 155
G V+ ++ F V + DM+ KCG + A FEE
Sbjct: 195 GTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVK 254
Query: 156 -KDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLESDLL 185
DF S L GK +H LK E +
Sbjct: 255 NGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLG-FEYETF 313
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKH-----LVSWNAMLAGYALGGFREEITGFTQY 240
+ N+L D Y+K + A S + Q H +VS A++ GY +
Sbjct: 314 IGNALTDMYSKSGDMVSA----SNVFQIHSDCISIVSLTAIIDGYV------------EM 357
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
E AL F + + ++PN + + ++ ACA + G ++HG V++ + + V
Sbjct: 358 DQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS 417
Query: 301 IALISIQGL---------------GTGSFVWNSLIDMYGRCG----AIQK---------- 331
L+ + G WN+L+ ++ + G AI+
Sbjct: 418 STLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLK 477
Query: 332 -------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+G YF M+K Y + P E Y C++DLL RAG+ + +
Sbjct: 478 PNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAED 537
Query: 373 FMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG-------------- 408
F+ MPFEP+ C + + A+ AA L +LEP +SG
Sbjct: 538 FINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQ 597
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K H F D SH +I EKL L +IK+
Sbjct: 598 WEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKR 657
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
IGY+ + + HSE++A+AF L++ G P+ V KNLR+C DCHS
Sbjct: 658 IGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSA 717
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK ER II+ D RFHHF +G+CSCGDYW
Sbjct: 718 LKFISKV----TERNIIVRDISRFHHFSNGSCSCGDYW 751
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 151/604 (25%), Positives = 243/604 (40%), Gaps = 221/604 (36%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL---------------- 59
PD TY + + C +L +E G+QVHAH++ G+E F+
Sbjct: 127 VKPD--NFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 184
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK-----------ACS 106
+FE+M ER+V SW++++ + LG + + + L + +EG ++ AC+
Sbjct: 185 CCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACT 244
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
L +G+ V+ +++ N V+ +++M++KCG +
Sbjct: 245 HLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSL-------------------- 284
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ C + K+A +K+ +S++ M++G A
Sbjct: 285 --------------------------YKGMCLFQKMA--------KKNKLSYSVMISGLA 310
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G+ G L F+ M++ ++P+ I GVL AC+
Sbjct: 311 MHGY------------GREGLRIFTEMLEQGLEPDDIVYVGVLNACSHA----------- 347
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
G +Q EG + F MK E+
Sbjct: 348 ----------------------------------------GLVQ--EGLQCFNRMKLEHG 365
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAA 396
+EP ++ Y CMVDL+ RAG+ D+ L +K MP EP +S N E AA
Sbjct: 366 IEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAA 425
Query: 397 RHLFELEP-----------------------------LSSG--------------KVHSF 413
+ LF+L+ S G K+H F
Sbjct: 426 KQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRF 485
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
++ D H + E L ++ ++K GY K+ GHS+KLA+A+
Sbjct: 486 VSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAY 545
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
LI TS GSP+R+++NLRMC DCH+ TK +S +REI + D +RFHHF DGACSC
Sbjct: 546 ALIHTSQGSPIRIVRNLRMCNDCHTYTKLISII----FDREITVRDRHRFHHFKDGACSC 601
Query: 520 GDYW 523
DYW
Sbjct: 602 RDYW 605
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
F + G + + E AL + M + ++P+ + +L ACA++ + G ++H ++L
Sbjct: 99 FNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHIL 158
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
+ GL FV NSLI MYG+CG I FE M E
Sbjct: 159 K----------------LGLENDVFVQNSLISMYGKCGEI--GVCCAVFEQMN-----ER 195
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
++ + ++ A G + D L + M E
Sbjct: 196 SVASWSALITAHASLGMWSDCLRLLGDMSNE 226
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 141/503 (28%), Positives = 219/503 (43%), Gaps = 136/503 (27%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
M + C + + F K + L ++ G+++H ++ + ES + V N+L+ YA C
Sbjct: 130 QMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIR-NGFESLVFVQNTLVHMYAAC 188
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ + AH F + +++LV+WN+++ GYAL G E AL F M
Sbjct: 189 GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNE------------ALTLFREMGLRG 236
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--------- 308
++P+ ++ +L+ACA++ LG+ H Y+++ + + G AL+ +
Sbjct: 237 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 296
Query: 309 -----LGTGSFV-WNSLI-----DMYGR------------------------------CG 327
+ S V W SLI + +G+ CG
Sbjct: 297 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 356
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA--- 384
+ +EG+ YF+ MK+EY + P +E Y CMVDLL RAG F++ MP +P++
Sbjct: 357 MV--DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWR 414
Query: 385 ---EPCNPD----IAEHAARHLFELEPLSSG----------------------------- 408
C + E A L +LEP SG
Sbjct: 415 TLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREG 474
Query: 409 --------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----------- 443
++H F+ GD SH +I KL + +K GY+
Sbjct: 475 VKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIE 534
Query: 444 ---KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
K HSEK+A+AF LI+T+ G P+RV+KNLR+C DCH K +SK +RE
Sbjct: 535 EEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKV----FDRE 590
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I++ D RFHHF DG CSC DYW
Sbjct: 591 IVVRDRSRFHHFKDGHCSCKDYW 613
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 48/257 (18%)
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEM--ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
S + C + P + KC + + AS +F+ + S+ +HG L D+
Sbjct: 22 SFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSI-RHGVP-----LTNPDM 75
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
L+ +L+ F C + AH FS+I+ ++ +WN M+ GYA +
Sbjct: 76 GKYLIF--TLLSF---CSPMSYAHQIFSQIQNPNIFTWNTMIRGYA------------ES 118
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ ALE + +M + ++P+T + +L A A++ + G+++H +R
Sbjct: 119 ENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIR---------- 168
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G + FV N+L+ MY CG + FE+M E + + +++
Sbjct: 169 ------NGFESLVFVQNTLVHMYAACG--HAESAHKLFELMA-----ERNLVTWNSVING 215
Query: 361 LARAGQFDDTLNFMKKM 377
A G+ ++ L ++M
Sbjct: 216 YALNGRPNEALTLFREM 232
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 168/633 (26%), Positives = 263/633 (41%), Gaps = 171/633 (27%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
N +GI++ CG E +F+++ ++NV + M+ Y Y++ + ++ +
Sbjct: 53 NPSVGIKLMRVYAACG-EPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTM 111
Query: 97 IDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146
+G V KA S VG ++ ++ I + N V ++ M+ KC +
Sbjct: 112 YTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSL 171
Query: 147 EMASGEFEE---KDFSNLS--------------LLKHGKEIHPHHLKKDDLE-SDLL--V 186
+ A +E +D + + L+ +E+ +LK +D + LL V
Sbjct: 172 KEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAV 231
Query: 187 NNSLMD--FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
N+ D Y K +LK + +K ++SWN M+A Y +E
Sbjct: 232 TNTTSDNVLYVKEMFLK--------LTKKSVISWNVMIAMYVNNSMPKE----------- 272
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ +S+M ++P+ +S+ VL A + LG+ +H + R + + + ALI
Sbjct: 273 -AVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALI 331
Query: 305 SI---------------QGLGTGSFVWNSLIDMYGRCG---------AIQKNEGW----- 335
+ Q W S+I YG+CG A +N G
Sbjct: 332 DMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSI 391
Query: 336 ------------------RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
RY+ + E + P +E + C+VDLL RAG+ D+ F+++M
Sbjct: 392 AFVSVLAACSHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQM 451
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P EP C N +I AA L L P SG
Sbjct: 452 PLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVA 511
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMK 444
VH+F+AGD SH KI E+L L ++K++GYM
Sbjct: 512 AIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMP 571
Query: 445 RIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
+ HSEKLA+AF +I+T PG+P+RV KNLR+CGDCH K +S
Sbjct: 572 ETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLIS 631
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ D +RFHHF +G CSCGDYW
Sbjct: 632 KIA----EREIIIRDTHRFHHFQEGCCSCGDYW 660
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K++H L L + V LM YA C +A F +I K++V +N M+ Y
Sbjct: 38 KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVN 97
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
++ AL + M P+ + VL A ++ +G +IHG
Sbjct: 98 NHLYKD------------ALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGA 145
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
VL+ GL +V N LI MYG+C ++++ + + +
Sbjct: 146 VLK----------------IGLDLNLYVGNGLIAMYGKCKSLKEAQ---------QVLDE 180
Query: 348 EPAME--QYCCMVDLLARAGQFDDTLNFMKKM 377
P + + MV + A+ G+F+D L ++M
Sbjct: 181 IPCRDVVSWNSMVSVYAQNGRFNDALELCREM 212
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 148/588 (25%), Positives = 230/588 (39%), Gaps = 194/588 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F++MP R++ SW S+M + GY +N F + E V AC+ +
Sbjct: 196 LFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMG 255
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
GK ++ ++ + G A V +++M+ K G ++ AS FEE +L
Sbjct: 256 ALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVV 315
Query: 170 IHPH-----------------------------------------------HLKKDDLES 182
IH H ++ + +
Sbjct: 316 IHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNA 375
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+++ +L++ YAK L + F +IK + ++W AMLAGYA+ +
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAV------------HAC 423
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G A++ F M++ ++ + ++ + +L+AC+ + GK
Sbjct: 424 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGK-------------------- 463
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+YFE+M + Y +EP ++ Y CMVDLL
Sbjct: 464 ---------------------------------KYFEIMSEVYRVEPRLDHYSCMVDLLG 490
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
R+G+ +D +K MP EPSS C N ++ + A L L+P
Sbjct: 491 RSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIM 550
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ K+H F+ GD H +I K
Sbjct: 551 LSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTK 610
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
L L +I + G + HSEKLA+AFGL+ T G PL + KN
Sbjct: 611 LEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKN 670
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCHS K+ S EK R II+ D+ RFHHF DG CSC DYW
Sbjct: 671 LRICGDCHSTAKFASLLEK----RTIIIRDSKRFHHFADGLCSCRDYW 714
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 39/207 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD + + L+ Y K Y + A F ++ + LVSWN++++G + G+
Sbjct: 172 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLG--------- 222
Query: 242 DGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L F RM ++ QPN ++L V++ACA + GK +HG V++
Sbjct: 223 ---ACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVK---------- 269
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G+ + V NSLI+MYG+ G + + + FE M ++ + MV +
Sbjct: 270 ------LGMSGKAKVVNSLINMYGKLGFL--DAASQLFEEMPVR-----SLVSWNSMVVI 316
Query: 361 LARAGQFD---DTLNFMKKMPFEPSSA 384
G + D N MK+ P A
Sbjct: 317 HNHNGYAEKGMDLFNLMKRAGINPDQA 343
>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Glycine max]
Length = 582
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 207/460 (45%), Gaps = 138/460 (30%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V +SL+D YAKC + +A F ++ K++VSW+ M+ GY +Q G
Sbjct: 142 DVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGY------------SQMGL 189
Query: 243 GETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
E AL F R ++ D ++ N +LS VL C+ F+LGK++HG + S V
Sbjct: 190 DEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVA 249
Query: 301 IALISIQ---GLGTGSF------------VWNSLI------DMYGR-------------- 325
+LIS+ G+ G + +WN+++ GR
Sbjct: 250 SSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVK 309
Query: 326 ---------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
G ++K E F +MK E+ +EP + Y +VDLL RAG+ ++
Sbjct: 310 PNFITFLCLLYACSHAGLVEKGE--HCFGLMK-EHGIEPGSQHYATLVDLLGRAGKLEEA 366
Query: 371 LNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------ 408
+ +K+MP +P+ + C N ++A A +FE+ +SSG
Sbjct: 367 VLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAA 426
Query: 409 -------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+VH+F AGD SH +I EKL L E+
Sbjct: 427 GRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEM 486
Query: 438 KKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K GY+ K HSE+LA+AFGLI+ P P+RV+KNLR+CGDCH
Sbjct: 487 AKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCH 546
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ K++SK R II+ DN RFH F DG C+CGDYW
Sbjct: 547 TAIKFISKCTG----RVIIVRDNNRFHRFEDGKCTCGDYW 582
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------------GVYKACSEL 108
+F++MP +NV SW+ M+ Y+ +G EE +NLF +++ V + CS
Sbjct: 165 VFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSAS 224
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+GK V+ F+ + V ++ ++ KCG +E FEE NL +
Sbjct: 225 TLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGM 279
>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Brachypodium distachyon]
Length = 669
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 147/540 (27%), Positives = 229/540 (42%), Gaps = 185/540 (34%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A +F+ M E++V SW SM+ +Y G + + L+ +++
Sbjct: 245 DLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLN--------------- 288
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
+S + NA +L + C ++ ++ GK IH +
Sbjct: 289 --------VSGSIKCNAVTLSAIL---LAC---------------AHAGTIQTGKCIH-N 321
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ + LE ++ V S++D Y+KC +++A F KIK+K+++SW+AM
Sbjct: 322 QVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAM------------ 369
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
ITG+ +G G+ AL+ F+ M ++ PN I+ VLAAC+
Sbjct: 370 ITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHA------------------ 411
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G + K W + MKK + +EP +E
Sbjct: 412 ---------------------------------GLLDKGRYW--YNAMKKRFGIEPGVEH 436
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y CMVDLL RAG D+ +K+M +P +A C N ++AE +A+ LFEL+
Sbjct: 437 YGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELD 496
Query: 404 PLS-------------------------------------------SGKVHSFIAGDTSH 420
+ G+ H F GD SH
Sbjct: 497 ATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSH 556
Query: 421 SLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLIS 463
+I L +L ++++ GY +P G HSEKLA+AF L++
Sbjct: 557 PQHKEIYSYLGKLLEKMQEAGY---VPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMN 613
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ PGS + VIKNLR+C DCH+ K ++K +REII+ D RFHHF DG+CSCGDYW
Sbjct: 614 SVPGSVIHVIKNLRVCTDCHTAIKLITKIA----QREIIVRDLQRFHHFKDGSCSCGDYW 669
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 135/485 (27%), Positives = 209/485 (43%), Gaps = 139/485 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLV 216
+ L L+ G+ +H K+ L + + V NSL+ Y C + AH F +I +++LV
Sbjct: 131 TRLLALREGESLHAE-AAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLV 189
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN+++ G+A G E+ L F ++ D+ P+ ++ VL ACA++
Sbjct: 190 SWNSVMNGFAANGRPNEV------------LTIFRETLEADLMPDGFTIVSVLTACAEIG 237
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISI----------------QGLGTGSFVWNSLI 320
LG+ +H + + + ++ VG ALI + G+ W SLI
Sbjct: 238 ALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLI 297
Query: 321 -------------DMYG----------------------RCGAIQKNEGWRYFEMMKKEY 345
+++G CG + ++G+RYF M+ +Y
Sbjct: 298 VGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLV--DDGFRYFNEMQDKY 355
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHA 395
+ P +E CMVDLL RAG+ ++ N++ MP EP++ A ++ E A
Sbjct: 356 GIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAA 415
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
L EL+P SG V+
Sbjct: 416 WARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYE 475
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALA 458
F+ GD SH +I + L + ++ GY+ R HSE+LA+A
Sbjct: 476 FVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIA 535
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ + PGSP+R++KNLRMCGDCH K +SK +REII+ D RFHHF G CS
Sbjct: 536 FALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKV----YDREIIVRDRSRFHHFKGGECS 591
Query: 519 CGDYW 523
C DYW
Sbjct: 592 CKDYW 596
>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
Length = 438
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 190/450 (42%), Gaps = 131/450 (29%)
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+++ +AK L +A F++ + ++ WNAM+A Y Q+GD A+
Sbjct: 5 TVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAY------------VQHGDSRQAIR 52
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI---- 304
F ++ ++PN+++L VL ACA + + GK +H H + V A++
Sbjct: 53 LFDELLARRIEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYS 112
Query: 305 -------SIQGLGT----GSFVWNSLIDMYGRCGAIQK---------------------- 331
+++ + W +++ + + G I +
Sbjct: 113 KCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVH 172
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
EG +YF++M Y + P + Y CMVDLL RAG D+ +F+ +MP
Sbjct: 173 LLSACSHKGLVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGA 232
Query: 381 PSSA------EPC----NPDIAEHAARHLFEL---------------------------- 402
P +A C + D E A+ + E
Sbjct: 233 PHAAVLKSLLSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIR 292
Query: 403 ----------EPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---- 443
+P S G+V F+AGD SH ++ I KL L S +K+ GY+
Sbjct: 293 SLMVERGVRKDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTS 352
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K HSEKLA+AFGL++T GSP+RVIKNLR+C DCH K +S E
Sbjct: 353 LVLHDVAEEEKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIE 412
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R I+ D RFHHF +G CSCGDYW
Sbjct: 413 ----QRRIVFRDLSRFHHFENGVCSCGDYW 438
>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1134
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 160/640 (25%), Positives = 258/640 (40%), Gaps = 195/640 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F+ MP ++ SW SM+ + +EE V+ F+ + G+ +CS L
Sbjct: 513 VFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGW 572
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIK------CGRMEMASGEFEEKDF------ 158
+G+ ++ + + V +L ++ + C ++ E+++ +
Sbjct: 573 LTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGA 632
Query: 159 -------------------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
S+ S+L G +IH LK +
Sbjct: 633 LAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYS-VA 691
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGGFREEITGFTQY 240
D + N+L+ FY KC ++ FS++ ++ VSWN+M++GY G +
Sbjct: 692 DDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHK------- 744
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A++ M+Q + + + + VL+ACA V + G E+H +R ++ VG
Sbjct: 745 -----AMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVG 799
Query: 301 IALISIQG----LGTGS-----------FVWNSLIDMYGRCGAIQK-------------- 331
AL+ + + S + WNS+I Y R G QK
Sbjct: 800 SALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQS 859
Query: 332 -------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+EG+++F+ M + Y + P +E + CMVDLL RAG +
Sbjct: 860 PDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIED 919
Query: 373 FMKKMPFEPS------------SAEPCNPDIAEHAARHLFELEPLSS------------- 407
F+K MP +P+ A N ++ + AA+ L ELEP ++
Sbjct: 920 FIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAG 979
Query: 408 ------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
VH F+AGD +H KI EKL L ++I
Sbjct: 980 GNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKI 1039
Query: 438 KKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+ GY+ HSEKLA+AF L S P+R++KNLR+CGDCH
Sbjct: 1040 RDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCH 1098
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KY+SK R+ II+ D+ RFHHF G CSCGDYW
Sbjct: 1099 TAFKYISKIVGRQ----IILRDSNRFHHFGGGMCSCGDYW 1134
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 157 DFSNLSLLKH-GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
+FSNL K G+E+H + + +++ + + N+L++ Y KC + A F + K
Sbjct: 463 EFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDT 522
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN+M I+G E A+ F M + M P+ S+ L++C+ +
Sbjct: 523 VSWNSM------------ISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSL 570
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
LG++IHG + + L V AL+++
Sbjct: 571 GWLTLGRQIHGEGFKWGLDLDVSVSNALLTL 601
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 171 HPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
H H L K D+ N+L++ Y + L A F ++ QK+LVSW+ +++GY
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGY---- 216
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--KGFKLGKEIHGY 287
TQ + A F +I + + PN ++ L AC Q G KLG +IH +
Sbjct: 217 --------TQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAF 268
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG-AIQ 330
+ + + L+S+ +GS WNS+I +Y R G A+
Sbjct: 269 ICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVS 328
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+ + +M E N+ P C +V
Sbjct: 329 AFKLFSVMQMEGVELNLRPNEYTLCSLV 356
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 134/357 (37%), Gaps = 47/357 (13%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEK 64
VT+ I + L LG Q+HA ++ V L AF G +F +
Sbjct: 660 VTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSR 719
Query: 65 MPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
M ER + SW SM+ Y G + ++L + ++ G V AC+ +
Sbjct: 720 MSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLER 779
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL---SLLKHGKEI 170
G +V+ + E + V ++DM+ KCG+++ AS FE N+ + + G
Sbjct: 780 GMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYAR 839
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV-AHCKFSKIKQKHLVSWNAMLAGYALGG 229
H H K + + + + D L +H KH S M Y L
Sbjct: 840 HGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKS---MGEVYGLSP 896
Query: 230 FREEITGFT----QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E + + GD + +F M M PN + VL AC + G E+
Sbjct: 897 RIEHFSCMVDLLGRAGDVKKIEDFIKTM---PMDPNILIWRTVLGACCRANG--RNTELG 951
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID--MYGRCGAIQKNEGWRYFEM 340
+ I+L + + + + W +++ + R A++K+ G + M
Sbjct: 952 QRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNM 1008
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 133/339 (39%), Gaps = 98/339 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F++MP++N+ SW+ ++ Y +E +LF +I G+ +AC +
Sbjct: 197 LFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGS 256
Query: 111 H--RVGKDVYDYMISIKFEGNACVKRPVLDMFIKC-GRMEMASGEFEE------------ 155
++G ++ ++ + + + ++ M+ C G ++ A F+E
Sbjct: 257 TGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSI 316
Query: 156 --------------KDFSNLSLLKHGKEIHPH---------------------------H 174
K FS + + + P+
Sbjct: 317 ISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTR 376
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
++K DL V ++L++ +A+ + A F ++ ++ V+ N ++ G A
Sbjct: 377 IEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLA-------- 428
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK----EIHGYVLR 290
+ GE A + F M + ++ N+ SL +L+ + K GK E+H Y+ R
Sbjct: 429 ----RQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFR 483
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+G+ A ISI N+L++MYG+C AI
Sbjct: 484 ------SGLVDARISIG---------NALVNMYGKCTAI 507
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 151/604 (25%), Positives = 243/604 (40%), Gaps = 221/604 (36%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL---------------- 59
PD TY + + C +L +E G+QVHAH++ G+E F+
Sbjct: 84 VKPD--NFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 141
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK-----------ACS 106
+FE+M ER+V SW++++ + LG + + + L + +EG ++ AC+
Sbjct: 142 CCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACT 201
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
L +G+ V+ +++ N V+ +++M++KCG +
Sbjct: 202 HLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXL-------------------- 241
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ C + K+A +K+ +S++ M++G A
Sbjct: 242 --------------------------YKGMCLFQKMA--------KKNKLSYSVMISGLA 267
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G+ G L F+ M++ ++P+ I GVL AC+
Sbjct: 268 MHGY------------GREGLRIFTEMLEQGLEPDDIVYVGVLNACSHA----------- 304
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
G +Q EG + F MK E+
Sbjct: 305 ----------------------------------------GLVQ--EGLQCFNRMKLEHG 322
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAA 396
+EP ++ Y CMVDL+ RAG+ D+ L +K MP EP +S N E AA
Sbjct: 323 IEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAA 382
Query: 397 RHLFELEP-----------------------------LSSG--------------KVHSF 413
+ LF+L+ S G K+H F
Sbjct: 383 KQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRF 442
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
++ D H + E L ++ ++K GY K+ GHS+KLA+A+
Sbjct: 443 VSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAY 502
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
LI TS GSP+R+++NLRMC DCH+ TK +S +REI + D +RFHHF DGACSC
Sbjct: 503 ALIHTSQGSPVRIVRNLRMCNDCHTYTKLISII----FDREITVRDRHRFHHFKDGACSC 558
Query: 520 GDYW 523
DYW
Sbjct: 559 RDYW 562
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 164/630 (26%), Positives = 256/630 (40%), Gaps = 203/630 (32%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHL---------------IVCGVELCAFLG----MFEKM 65
Y+ + + C +L +E G VHAHL IV C L MF++M
Sbjct: 90 YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P +++ +WT+++ ++ + + LF M+ +
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLF-------------------------PQMLRLG 184
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
F+ N L +K E L G ++H LK +S +
Sbjct: 185 FQPNHFT----LSSLLKASGSEHG--------------LDPGTQLHAFCLKYG-YQSSVY 225
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V ++L+D YA+C ++ A F + K VSWNA+++G+A + G+GE
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA------------RKGEGEH 273
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL +M + + QP + S VL+ACA + + GK +H ++++ ++L +G L+
Sbjct: 274 ALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLD 333
Query: 306 IQGLGTGSF----------------VWNSLIDMYGRCG---------------AIQKNE- 333
+ GS WN+++ + G I+ NE
Sbjct: 334 MYA-KAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEI 392
Query: 334 -----------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
G YFE+MKK Y +EP + Y VDLL R G D F+++
Sbjct: 393 SFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------------- 409
MP EP++A C N ++ +AA FEL+P SG
Sbjct: 452 MPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDV 511
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
VH F+A D +H + +I K + +IK+IGY
Sbjct: 512 AKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGY- 570
Query: 444 KRIPACGH-----------------SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
+P H SEKLALAF L++T GSP+R+ KN+R+CGDCH+
Sbjct: 571 --VPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAI 628
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGA 516
K+VSK +REII+ D RFH F DG+
Sbjct: 629 KFVSKVV----DREIIVRDTNRFHRFRDGS 654
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LL M N TY+ + C + LE G VHAH+I G++L AF+G
Sbjct: 277 LLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYA 336
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F+++ + +V SW +M+ G +E ++ F ++ G+
Sbjct: 337 KAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGI 387
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 147/597 (24%), Positives = 242/597 (40%), Gaps = 190/597 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R+V SW +M+ Y +G + LF + +DV+ +
Sbjct: 223 LFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF----------------NESPIRDVFTW 266
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++ +++ G ++ A F+E N
Sbjct: 267 T-------------AMVSGYVQNGMVDEARKYFDEMPVKNE------------------- 294
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----------- 229
+ N+++ Y + + + +A F + +++ SWN M+ GY G
Sbjct: 295 ----ISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDM 350
Query: 230 --------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+ I+G+ Q G E AL F M + N + S L+ CA + +LG
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELG 410
Query: 282 KEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRC 326
K++HG V++ + VG AL+ + +G+ V WN++I Y R
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470
Query: 327 G---------------AIQKNE------------------GWRYFEMMKKEYNMEPAMEQ 353
G ++ +E G YF M ++YN++P +
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKH 530
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELE 403
Y CM+DLL RAG+ ++ N M+ MPF+P +A N ++ E AA +F++E
Sbjct: 531 YTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKME 590
Query: 404 PLSSG-------------------------------------------KVHSFIAGDTSH 420
P +SG K+H+F GD H
Sbjct: 591 PQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFH 650
Query: 421 SLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSP 466
+I L L ++++ GY+ HSEKLA+AFG+++
Sbjct: 651 PEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPA 710
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+RV+KNLR+C DCH+ K++SK R II+ D++RFHHF +G CSCGDYW
Sbjct: 711 GRPIRVMKNLRVCQDCHNAIKHISKIVG----RLIILRDSHRFHHFSEGICSCGDYW 763
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 149/387 (38%), Gaps = 95/387 (24%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ +++ + +L L L F+KMPER++FSW M+ Y
Sbjct: 68 VFNSMPRRSSVSYNAMISGYLRNAKFSLARDL--FDKMPERDLFSWNVMLTGYVRNRRLG 125
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYMI---SIKFEGNACVKRPVLD 138
E LF L+ + V + L + ++V++ M SI + G +L
Sbjct: 126 EAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNG-------LLA 178
Query: 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
++ GR++ A FE + SN L+ N LM Y K
Sbjct: 179 AYVHNGRLKEARRLFESQ--SNWELISW---------------------NCLMGGYVKRN 215
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------FREE-----------ITGFTQ 239
L A F ++ + ++SWN M++GYA G F E ++G+ Q
Sbjct: 216 MLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQ 275
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G + A ++F M N IS + +LA Q K + E+ + +I
Sbjct: 276 NGMVDEARKYFDEMP----VKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNIS----- 326
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCM 357
WN++I YG+ G I + +K ++M P + + +
Sbjct: 327 ---------------SWNTMITGYGQNGGIAQ---------ARKLFDMMPQRDCVSWAAI 362
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA 384
+ A+ G +++ LN +M + S+
Sbjct: 363 ISGYAQNGHYEEALNMFVEMKRDGESS 389
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T++ C + LELG QVH ++ G E F+G +FE +
Sbjct: 393 TFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGI 452
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDE----GVYKACSELKDHRVGK 115
E++V SW +M+ Y G+ + + LF + DE GV ACS G
Sbjct: 453 EEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGT 512
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ + DY + + C ++D+ + GR+E A
Sbjct: 513 EYFYSMDRDYNVKPTSKHYTC----MIDLLGRAGRLEEA 547
>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
Length = 652
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 161/613 (26%), Positives = 249/613 (40%), Gaps = 153/613 (24%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
G+F++MP ++ SWT+++ + + G++EE LF + + + L ++ D
Sbjct: 44 GVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIED 103
Query: 120 --YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----EEKDFSNLSLL----KHGKE 169
Y E + +L + G+ME A F E FS SLL + G
Sbjct: 104 AKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDV 163
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ E +L+ +++ Y+ + A F + ++ L++W AML+ YA G
Sbjct: 164 KAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNG 223
Query: 230 ---FREEI----------------TGFTQYGDGETALEFFSRM-----IQTDMQPNTISL 265
+ EI + E + E F RM + M PN ++
Sbjct: 224 HLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTF 283
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV------ 315
+L AC+ + G++IH V V AL++ G LG V
Sbjct: 284 ITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRR 343
Query: 316 -----WNSLIDMYGRCGAIQK---------NEGW------------------------RY 337
W+S+I + + G + + +EG +
Sbjct: 344 RDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDF 403
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNP 389
F + + +EP +E Y CMVD+L RAG+ D + ++ MPF P SA
Sbjct: 404 FRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYT 463
Query: 390 DI--AEHAARHLFELEPLSSG--------------------------------------- 408
D+ E AA +FEL+P +S
Sbjct: 464 DVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWI 523
Query: 409 ----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
+VH FIAGD H +I ++ RL ++K+ GY +
Sbjct: 524 EVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWY 583
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFGLIST PG+PLR++KNLR+C DCH+ TK +SK REI++ D RFH
Sbjct: 584 HSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTG----REILVRDTNRFH 639
Query: 511 HFVDGACSCGDYW 523
HF +G CSC DYW
Sbjct: 640 HFQNGMCSCNDYW 652
>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 151/590 (25%), Positives = 247/590 (41%), Gaps = 199/590 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV------- 113
+F++MP R++ SW +M+G + G E+ + LF + EG +CSE V
Sbjct: 104 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGT--SCSEFTVSSVVCACAAK 161
Query: 114 -----GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MA 149
K ++ + + + N V +LD++ KCG ++ M
Sbjct: 162 CCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMV 221
Query: 150 SGEFEEKDFSNLSLLKH-----------------------------GKEIHPHHLKKDDL 180
+G + + + +L H GK++ K +
Sbjct: 222 AGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCK-TGI 280
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S++ V +SL+D YAKC ++ A+ FS +++K++V WNA+L +GF+++
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAIL------------SGFSRH 328
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ +F +M Q
Sbjct: 329 VRSLEAMIYFEKMQQ--------------------------------------------- 343
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G+ + S++ G ++K G +YF++M + +N+ P + Y CMVD+
Sbjct: 344 ------MGICPNDITYISVLSACSHLGLVEK--GRKYFDLMIRVHNVSPNVLHYSCMVDI 395
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAG + +F+ +MPF+ +++ C N ++AE AA+HLFE+EP ++G
Sbjct: 396 LGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNH 455
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
KVHSF+ G+ +H + +I
Sbjct: 456 VLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIY 515
Query: 428 EKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVI 473
KL L E+KKIGY + HSEKLAL FG++ G+P+R++
Sbjct: 516 LKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIM 575
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K S EREII+ D RFHHF +G CSCG++W
Sbjct: 576 KNLRICGDCHSFMKLASSIT----EREIIVRDTNRFHHFKNGYCSCGEFW 621
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L +D + +N LM+ Y+KC ++ A F ++ + LVSWN M+ + TQ
Sbjct: 78 LRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSH------------TQ 125
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GD E AL F +M + + ++S V+ ACA K++HG+ L+
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALK--------- 176
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
L + FV +L+D+Y +CG ++
Sbjct: 177 -------TALDSNVFVGTALLDVYAKCGLVK 200
>gi|302780855|ref|XP_002972202.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
gi|300160501|gb|EFJ27119.1| hypothetical protein SELMODRAFT_96876 [Selaginella moellendorffii]
Length = 485
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 137/484 (28%), Positives = 207/484 (42%), Gaps = 125/484 (25%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L L+ GK IH + D ++ + V N+L++ Y+KCR L +A F +I K +VSW
Sbjct: 6 SGLRDLEQGKSIHDR-VAADGFDTQVFVGNALVNMYSKCRRLDLARAAFERIDSKDVVSW 64
Query: 219 NAMLAGYA-LGGFREE--------------------ITGFTQYGDGETALEFFSRMIQTD 257
N+M+A ++ LGG E I ++G G A+E F RM
Sbjct: 65 NSMIAAHSQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLDG 124
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGS 313
+QPN ++L VL ACA G+ H V + T V AL+++ G LG+
Sbjct: 125 IQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSAR 184
Query: 314 FV-----------WNSLIDMYGRCG---------------AIQKN--------------- 332
V W +++ Y G IQ N
Sbjct: 185 TVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVITFVSVLFNCSHAG 244
Query: 333 ---EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE---- 385
+G F +M ++ + P E Y C++DLL RAG ++ ++ MP EP A
Sbjct: 245 VVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRTMPVEPDKAAWNSL 304
Query: 386 --PC----NPDIAEHAARHLFELE-PLSS------------------------------- 407
C + D A+ A+ +L P +S
Sbjct: 305 LGACKVHSHTDRAKRIAKLACDLALPFASAPYVLLSNMYTDEEQQSDPEEDQCSSLIEVK 364
Query: 408 GKVHSFIAGDTSHSLVHKISEKLMRLYSEI---------KKIGYMKRIPACGHSEKLALA 458
G+VH F+AGD SH + +I +L RL E+ ++ G + HS KLA+A
Sbjct: 365 GRVHEFVAGDWSHPRIEEIVAELQRLQEEMMILRGSSLCEEGGQEGSVQENEHSLKLAIA 424
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
FG++++ GS + V+ R+C +CH K +SK R+I++ D+YRFHH G CS
Sbjct: 425 FGVLASPQGSTINVVNTRRICVECHDAAKVISKIAG----RKIVVRDSYRFHHIEQGVCS 480
Query: 519 CGDY 522
CGDY
Sbjct: 481 CGDY 484
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-------- 55
++ L MDL VT + + C + G + HA + CG E
Sbjct: 111 RDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANAL 170
Query: 56 ------CAFLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
C LG +F+ M RNV SWT+M+ Y G+ EE +F + EG+
Sbjct: 171 VNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGI 226
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 10/143 (6%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEE 88
F+R + + + AH + G + +F++M RNV SW+ ++ G +
Sbjct: 53 FERIDSKDVVSWNSMIAAHSQLGGSDEALETAVFDRMERRNVVSWSGLIAALAEHGRGRD 112
Query: 89 IVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138
+ LF+ + +G V +AC+ G+ + + FE V +++
Sbjct: 113 AIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVN 172
Query: 139 MFIKCGRMEMASGEFEEKDFSNL 161
M+ KCG + A F+ + N+
Sbjct: 173 MYGKCGHLGSARTVFDAMTWRNV 195
>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
Length = 720
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 176/646 (27%), Positives = 263/646 (40%), Gaps = 189/646 (29%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL-----------GMFEK-------MPE 67
A + + C + ++E G +VH ++ GV L L G FE+ M E
Sbjct: 116 AAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAE 175
Query: 68 RNVFSWTSMMGMY----NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
R+ SW +G ++LG + L DE S L+D ++ +IS
Sbjct: 176 RDAVSWNIAIGACIQSGDILGSMQ--------LFDE------SPLRD----TTSWNTIIS 217
Query: 124 -IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN-------LSLLKHGKEIHPHHL 175
+ G+A D RM A F +S L L G+++H L
Sbjct: 218 GLMRSGHAA------DALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVL 271
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF---SKIKQKHLVSWNAMLAGYALGGFRE 232
LE D V +SLMD Y KC L+ A F S + + +W+ M+AGY
Sbjct: 272 IAA-LEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGY------- 323
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q G E AL+ F RM++ + + +L+ V AACA V + G+++HG V +
Sbjct: 324 -----VQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLW 378
Query: 293 IQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG----AIQ--- 330
+L + A++ + + VW S++ Y G AI+
Sbjct: 379 YKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFE 438
Query: 331 --------------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
+EG YF+ M++EY + P++E Y C+VDL R+
Sbjct: 439 RMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRS 498
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----- 409
G D NF+++ + C + + A+ A+ L +LE +G
Sbjct: 499 GLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLS 558
Query: 410 --------------------------------------VHSFIAGDTSHSLVHKISEKLM 431
VH+F+AGD SH +I L
Sbjct: 559 NIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLE 618
Query: 432 RLYSEIKKIGYMKRIPACGH--------------SEKLALAFGLISTSPGSPLRVIKNLR 477
+L +K+IGY R H SEKLA+AFG+IST G+PLR+ KNLR
Sbjct: 619 KLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLR 678
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH KY+S A REI++ D YRFHHF D +CSC D+W
Sbjct: 679 VCEDCHEAIKYISLATG----REIVVRDLYRFHHFKDASCSCEDFW 720
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 131/341 (38%), Gaps = 74/341 (21%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSEL 108
G+F++ P R WT + G Y + + F ++ EG V + C+ +
Sbjct: 66 GVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGM 125
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLK 165
D GK V+ +M+ + + VLDM+ KCG+ E A G E+D + ++
Sbjct: 126 GDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAI 185
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
G I D+L + L F + + SWN +
Sbjct: 186 -GACIQS---------GDILGSMQL----------------FDESPLRDTTSWNTI---- 215
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I+G + G AL RM Q + N + S + LG+++H
Sbjct: 216 --------ISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLH 267
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG-WRYFEMMKKE 344
G VL I L +FV +SL+DMY +CG ++ + ++ + ++
Sbjct: 268 GRVL----------------IAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRD 311
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
N + MV + G+ ++ L+ ++M E +A+
Sbjct: 312 MNF-----AWSTMVAGYVQNGREEEALDLFRRMLREGVAAD 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
S++ F+ + R A F + + W ++G A G +Y DG A
Sbjct: 50 SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRG---------RYADGMRA-- 98
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F + + + PN L+ V+ CA + + GK +HG++LR+ + L
Sbjct: 99 FAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDV----------- 147
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV--DLLARAGQ 366
+ N+++DMY +CG ++ R F M + + + C+ D+L
Sbjct: 148 -----VLCNAVLDMYAKCGQFERAR--RVFGAMAERDAVSWNIAIGACIQSGDILGSMQL 200
Query: 367 FDDT 370
FD++
Sbjct: 201 FDES 204
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL-----------GMFEKMPE----- 67
TY+ F L +LG Q+H +++ +E AF+ G+ E
Sbjct: 246 TYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHW 305
Query: 68 ----RNV-FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHR 112
R++ F+W++M+ Y G EE ++LF ++ EGV AC+ +
Sbjct: 306 SPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVE 365
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
G+ V+ + + ++ +A + ++DM+ KCG +E A F+ N+++
Sbjct: 366 QGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/643 (24%), Positives = 256/643 (39%), Gaps = 176/643 (27%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+ T+ + + C K + G Q+H H++ G +L F+ +F+
Sbjct: 134 SYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFD 193
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDV 117
+ P R+V S+T+++ Y GY E LF + + V +E +++ ++
Sbjct: 194 RSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ M+ + V+ + G +E+ G+++H +
Sbjct: 254 FKEMMKTNIRPDESTMVTVVSACAQSGSIEL------------------GRQVHSW-IDD 294
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
S+L + NSLMD Y+KC L+ A F + K ++SWN ++ GY +E
Sbjct: 295 HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKE---- 350
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQL 295
AL F M+++ +PN +++ +L ACA + +G+ IH Y+ +
Sbjct: 351 --------ALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATN 402
Query: 296 STGVGIALISIQG---------------LGTGSFVWNSLI---DMYGRCGA--------- 328
++ + +LI + L WN++I M+GR A
Sbjct: 403 ASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMR 462
Query: 329 ---IQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
I+ ++ G F M ++Y + P +E Y CM+DLL +G F
Sbjct: 463 KIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLF 522
Query: 368 DDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSG--------- 408
+ + M EP C N ++ E A++L ++EP + G
Sbjct: 523 KEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIY 582
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
VH FI GD H +I L +
Sbjct: 583 ATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEME 642
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
++K G++ HSEKLA+AFGLIST PG+ L ++KNLR+C
Sbjct: 643 VLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCR 702
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 703 NCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 741
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 34/193 (17%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
L A F I++ +L+ WN M G+AL D +AL+ + MI +
Sbjct: 84 LPYAISVFETIQEPNLLIWNTMFRGHALSS------------DPVSALKLYVCMISLGLL 131
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
PN+ + +L +CA+ K FK G++IHG+VL+ L V +LIS+ +V N
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISV-------YVQNGR 184
Query: 320 I-------------DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARA 364
+ D+ I+ Y E +K ++ P + + M+ A
Sbjct: 185 LEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAET 244
Query: 365 GQFDDTLNFMKKM 377
G + + L K+M
Sbjct: 245 GNYKEALELFKEM 257
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 152/582 (26%), Positives = 238/582 (40%), Gaps = 181/582 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+++P ++V SW +M+ Y G +EE + FY E+++ V +
Sbjct: 219 LFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY------------EMQEANVLPN---- 262
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
K ++ + CG SGE GK I ++ +
Sbjct: 263 ------------KSTMVVVLSACGHTR--SGEL-------------GKWIGSW-VRDNGF 294
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S+L + N+L+D Y KC +A F I++K ++SWN M+ GY+ EE
Sbjct: 295 GSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEE------- 347
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV---LRHHIQLST 297
AL F M++++++PN ++ G+L ACA + LGK +H Y+ LR+ S
Sbjct: 348 -----ALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASL 402
Query: 298 GVGI---------------ALISIQGLGTGSFVWNSLIDMYGRCGAIQK----------- 331
+ S+ S WN+++ + G ++
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSRNLAS--WNAMLSGFAMHGHAERALALFSEMVNK 460
Query: 332 -----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+ G +YF M ++Y + P ++ Y CM+DLLARA +F+
Sbjct: 461 GLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFE 520
Query: 369 DTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG---------- 408
+ MK M EP A C + E+ A LF+LEP ++G
Sbjct: 521 EAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYA 580
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
VH F+ GD H + I + L +
Sbjct: 581 GAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDK 640
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+++ G++ K HSEKLA++FGLI T PG+ +R++KNLR+CG+
Sbjct: 641 LLEENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGN 700
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CHS TK +SK REII D RFHHF DG CSC D W
Sbjct: 701 CHSATKLISKI----FNREIIARDRNRFHHFKDGFCSCNDCW 738
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 134/336 (39%), Gaps = 87/336 (25%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF---------LGMFEK 64
Y + ++C +N + Q+H+ +I G + CA L +FE+
Sbjct: 31 YLNLLEKCKNINTFK---QIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87
Query: 65 MPER---NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDH 111
+ NVF W S++ Y++ ++LF ++ GV +K+C++ K
Sbjct: 88 NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKAT 147
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
GK ++ + + + N V V+ M+ G M+ A F++
Sbjct: 148 HEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSL------------- 194
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
D + +L+ Y L A F +I K +VSWNAM++GY
Sbjct: 195 ----------RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGY------ 238
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G E A+ F M + ++ PN ++ VL+AC + +LGK I +V +
Sbjct: 239 ------VQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDN 292
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
G G+ + N+LIDMY +CG
Sbjct: 293 ----------------GFGSNLQLTNALIDMYCKCG 312
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 39/176 (22%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAH------------LIVCGVELC 56
L + M +N VT+ I C L L+LG VHA+ L +++
Sbjct: 351 LFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMY 410
Query: 57 AFLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ 103
A G +F M RN+ SW +M+ + + G+ E + LF ++++G+++
Sbjct: 411 AKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITF 470
Query: 104 -----ACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
AC++ +G + DY IS K + C ++D+ + + E A
Sbjct: 471 VGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGC----MIDLLARAEKFEEA 522
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 164/655 (25%), Positives = 262/655 (40%), Gaps = 186/655 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFLGMFEKM 65
++ + C K+ +LG Q+H ++ G+ L A +F KM
Sbjct: 215 VFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKM 274
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF-YLLID---------EGVYKACSELKDHRVGK 115
R+ S+ S++ G+ + + LF + +D + AC+ + GK
Sbjct: 275 HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGK 334
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL------------ 163
++ Y+I + + ++ +LD+++KC +E A F + N+ L
Sbjct: 335 QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394
Query: 164 ------------------------------------LKHGKEIHPHHLKKDDLESDLLVN 187
L G++IH +K + ++ V
Sbjct: 395 NLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG-FQFNVYVC 453
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+ L+D YAK L A +++++ +VSW AM+AGY TQ+ AL
Sbjct: 454 SVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY------------TQHDLFAEAL 501
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG--YVLRHHIQLSTGVGIALIS 305
+ F M ++ + I S ++ACA ++ G++IH Y+ + LS G +A
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALAS-- 559
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM----------EQYC 355
N LI +Y +CG+I+ + +FEM +K AM +
Sbjct: 560 -----------NVLITLYSKCGSIEDAKR-EFFEMPEKNVVSWNAMITGYSQHGYGSEAV 607
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
+ + + + G + + F+ +MP EP + C N +I E AARHL ELEP
Sbjct: 608 SLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPE 667
Query: 406 SSG-------------------------------------------KVHSFIAGDTSHSL 422
S +H+F GD H L
Sbjct: 668 DSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPL 727
Query: 423 VHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGS 468
+I E + L +IGY+ K A HSEKLA+AFGL+S +
Sbjct: 728 AEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTM 787
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RVIKNLR+C DCH+ K+VSK R I++ D YRFHHF G CSC DYW
Sbjct: 788 PIRVIKNLRVCNDCHNWIKFVSKISN----RAIVVRDAYRFHHFEGGVCSCKDYW 838
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/384 (22%), Positives = 157/384 (40%), Gaps = 106/384 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY +F+ C +L ++HA + G + LG +F+ +
Sbjct: 12 TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK-DHRVG 114
P NV W ++ +++ LF L+I E V +ACS K +V
Sbjct: 72 PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD-------------- 157
+ ++ +I F + V P++D++ K G +++A FE KD
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191
Query: 158 ------------------------FSN-------LSLLKHGKEIHPHHLKKDDLESDLLV 186
FS+ + L K G+++H + K L S+ V
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG-FIVKWGLSSETFV 250
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+L+ Y++ L A FSK+ ++ +S+N++++G A GF + A
Sbjct: 251 CNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR------------A 298
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L+ F +M M+P+ ++++ +L+ACA V GK++H YV++
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIK---------------- 342
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQ 330
G+ + + SL+D+Y +C I+
Sbjct: 343 MGMSSDLIIEGSLLDLYVKCFDIE 366
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S LV N L+D Y+K ++ +A F ++ K VSW AM I+G +Q G
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM------------ISGLSQNG 192
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ A+ F +M ++ + P S VL+AC +++ FKLG+++HG++++
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK----------- 241
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
GL + +FV N+L+ +Y R G + E + F M + + Y ++ L
Sbjct: 242 -----WGLSSETFVCNALVTLYSRWGNLIAAE--QIFSKMHRRDRI-----SYNSLISGL 289
Query: 362 ARAGQFDDTLNFMKKMPFE 380
A+ G D L +KM +
Sbjct: 290 AQRGFSDRALQLFEKMQLD 308
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 61/236 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------------- 52
L Q M+ + ++ C + L G Q+HA + G
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALASNVL 562
Query: 53 VELCAFLGMFE-------KMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------- 94
+ L + G E +MPE+NV SW +M+ Y+ GY E V+LF
Sbjct: 563 ITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNH 622
Query: 95 ------------LLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
+I + AC+ K+ +G+ +++ ++ E +A ++
Sbjct: 623 VTFVGEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSAT--------YVL 674
Query: 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
M SG+++ +D + + G +KK+ S + V NS+ F+ R
Sbjct: 675 LSNMYAVSGKWDYRDRTRQMMKDRG-------VKKEPGRSWIEVKNSIHAFFVGDR 723
>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
Length = 600
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 157/635 (24%), Positives = 260/635 (40%), Gaps = 195/635 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
TY L+ ++C L G +VH+ L+ G +E+ G +F+++
Sbjct: 26 TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85
Query: 66 PERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
E+N V SW ++G Y G +E ++LF + EGV ++
Sbjct: 86 QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIA----------------NQVT 129
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ +AC P EE+ G+ +H + K LESD
Sbjct: 130 LINAIDACASLPS-----------------EEE----------GRIVHAIAVDKR-LESD 161
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+V SL++ + KC+ + A F + +K+LV+WN M+A Y +Q
Sbjct: 162 TMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY------------SQNWQC 209
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ A++ F M +QP+ ++ ++ ACA + G+ +H + I + +G A+
Sbjct: 210 KKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAV 269
Query: 304 ISIQG--------------LGTGSFV-WNSLIDMYGRCG--------------------- 327
+ G LG + V W++++ Y + G
Sbjct: 270 MHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNG 329
Query: 328 ------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
A + +G YF M +++ + P E Y ++DLL R+GQ + + +
Sbjct: 330 ITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLIN 389
Query: 376 KMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG----------------- 408
MP+EP S+ C + D A ++EL+P SG
Sbjct: 390 SMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDE 449
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
+VH F+A H + +I ++ RL + +K+ GY
Sbjct: 450 ARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGY 509
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + A HSE+LA+AFGLIST PG+ L ++KNLR+C DCH+ K
Sbjct: 510 VADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKA 569
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK R+I++ D RFHHF +GACSCGDYW
Sbjct: 570 ISKVVG----RKIVVRDAIRFHHFENGACSCGDYW 600
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG 60
L ++MDL VT C L + E G VHA + + G L G
Sbjct: 114 LFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFG 173
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
+F+ +P +N+ +W +M+ +Y+ ++ + +F + EGV
Sbjct: 174 KCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLT 233
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
AC+ L H G+ V+D + + + + V+ + KCGR++ A F+
Sbjct: 234 IIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFD 287
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 1 WVIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG 60
W K + + MDL VT+ I C L G VH + G+ + LG
Sbjct: 207 WQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALG 266
Query: 61 ------------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F+ + ++N +W++++ Y GY E + L++ ++ G+
Sbjct: 267 TAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325
>gi|242087239|ref|XP_002439452.1| hypothetical protein SORBIDRAFT_09g006640 [Sorghum bicolor]
gi|241944737|gb|EES17882.1| hypothetical protein SORBIDRAFT_09g006640 [Sorghum bicolor]
Length = 491
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 146/448 (32%), Positives = 202/448 (45%), Gaps = 108/448 (24%)
Query: 164 LKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFS--KIKQKHLVSWNA 220
L+ G+ +H L+ L ++D +V NSL+ Y+KC + A F + + LVSW A
Sbjct: 64 LRLGRALHARLLRTGSLLDADAVVTNSLLTLYSKCGAVVAARSVFDGMPVGLRDLVSWTA 123
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-K 279
M + + G E AL F ++ + PN +L AC + F
Sbjct: 124 MASCLSRNGAEAE------------ALRLFGETLEEGLLPNAFTLCAAAQACFLTELFHS 171
Query: 280 LGKEIHGYVLRHHI-QLSTGVGIALISI----------QGLGTGSF-----VWNSLIDMY 323
G + G V + VG ALI + + + G F VW LI +
Sbjct: 172 AGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAARRVFDGLFERTVVVWTLLITRH 231
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
G ++ EG +F MM+K++ + P ME Y CMVDLL R+G ++ L+F+ +MP + +
Sbjct: 232 A--GLVK--EGQEHFRMMQKDHGLIPRMEHYACMVDLLGRSGLVEEALDFINEMPCQADA 287
Query: 384 A------EPC----NPDIAEHAARHLFELEP--------LSS------------------ 407
C N DI E AA H+ +LEP LS+
Sbjct: 288 LVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYADAGLWDQVARLRSLM 347
Query: 408 -----------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-------- 442
+H F AGDT+H +I KL L EIK IGY
Sbjct: 348 RDKNLMKEKGLSWMHVENTIHEFRAGDTNHPQAEEIYTKLETLIREIKVIGYVPDTSIVL 407
Query: 443 ------MKRIPACGHSEKLALAFGLIS-TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
+K + HSEK+A+AFGLIS TS P+R+ KNLR+C DCHS KYVSKA
Sbjct: 408 HDMSDELKELCLLQHSEKIAVAFGLISCTSAIKPIRIFKNLRVCADCHSALKYVSKATG- 466
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D+ RFH DG CSCG+YW
Sbjct: 467 ---REIILRDSNRFHRMKDGECSCGEYW 491
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/589 (25%), Positives = 234/589 (39%), Gaps = 195/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG----VYKACSELKD 110
+F+++P ++V SW +M+ Y G Y+E + LF ++ DE V AC++
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
+G+ V+ ++ F N + ++D++ KCG +E A G FE KD
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLL-------------------------------- 185
+++++L K + L+ + +D+
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 186 ----VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ SL+D YAKC ++ AH F+ I K L SWNAM+ G+A+ +G
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM------------HG 449
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ + + FSRM + +QP+ I+ G+L+AC+ LG+ I
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI----------------- 492
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
F M ++Y M P +E Y CM+DLL
Sbjct: 493 ------------------------------------FRTMTQDYKMTPKLEHYGCMIDLL 516
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK-- 409
+G F + + M EP C N ++ E A +L ++EP + G
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
VH FI GD H +I
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
L + ++K G++ HSEKLA+AFGLIST PG+ L ++K
Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 696
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 697 NLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 741
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 87/391 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+ T+ + + C K + G Q+H H++ G +L ++ +F+
Sbjct: 134 SYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 193
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDV 117
K P R+V S+T+++ Y GY E LF + + V +E +++ ++
Sbjct: 194 KSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ M+ + V+ + G +E+ G+++H L
Sbjct: 254 FKDMMKTNVRPDESTMVTVVSACAQSGSIEL------------------GRQVH---LWI 292
Query: 178 DD--LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
DD S+L + N+L+D Y+KC L+ A F ++ K ++SWN ++ GY +E
Sbjct: 293 DDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE-- 350
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL F M+++ PN +++ +L ACA + +G+ IH Y+ +
Sbjct: 351 ----------ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR---- 396
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN--MEPAMEQ 353
++G+ S + SLIDMY +CG I E + +N + ++
Sbjct: 397 ----------LKGVTNASSLRTSLIDMYAKCGDI---------EAAHQVFNSILHKSLSS 437
Query: 354 YCCMVDLLARAGQFD---DTLNFMKKMPFEP 381
+ M+ A G+ D D + M+K+ +P
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F I++ +L+ WN M G+AL D +AL+ + MI + PN+ +
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS------------DPVSALKLYVCMISLGLLPNSYTFP 138
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI------ 320
VL +CA+ K FK G++IHG+VL+ L V +LIS+ +V N +
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISM-------YVQNGRLEDAHKV 191
Query: 321 -------DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTL 371
D+ I+ Y E +K ++ P + + M+ A G + + L
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 372 NFMKKM 377
K M
Sbjct: 252 ELFKDM 257
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 158/602 (26%), Positives = 245/602 (40%), Gaps = 182/602 (30%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNL-----------ELGIQVHAHLIVCGVELCAFLGMF 62
D PDE V AL C KL NL + I++ +L+V +++ A G
Sbjct: 231 DGVAPDEVAVIGAL--SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDI 288
Query: 63 EKMPERNVFS----------WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
+ + VF W +++ Y LG+ + +LF D
Sbjct: 289 AQ--AQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLF----------------DQM 330
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGK 168
+DV + I ++ R L +F++ R M + F ++L L HG+
Sbjct: 331 GARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGR 390
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+H +++ +E D+ + +L+D Y KC + A F ++ ++ + +W AM+AG A
Sbjct: 391 ALHAS-IEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G G+ ALE F +M + QP +++ VL AC+
Sbjct: 450 GM------------GKDALESFCQMKRDGFQPTSVTYIAVLTACSH-------------- 483
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+SL+D EG +F M+ + +
Sbjct: 484 ----------------------------SSLLD-----------EGRLHFNEMRSLHKLH 504
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P +E Y CM+DLLAR+G D+ ++ ++ MP +P++ C N D+A HAA H
Sbjct: 505 PQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEH 564
Query: 399 LFELEP-------------------------------------------LSSGKVHSFIA 415
L +L P +G+VH F+A
Sbjct: 565 LLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVA 624
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY---MKRIPA-----------CGHSEKLALAFGL 461
D SH +I + + +K +GY RI HSEK+A+AFGL
Sbjct: 625 NDQSHPWTLEIMAMMEEIACRLKSVGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGL 684
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
IS P P+ ++KNLR+C DCHS K VS+ REII+ D RFHHF DGACSC D
Sbjct: 685 ISLPPSLPIHIVKNLRVCEDCHSAIKLVSQLWN----REIIVRDRSRFHHFRDGACSCND 740
Query: 522 YW 523
+W
Sbjct: 741 FW 742
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/336 (22%), Positives = 143/336 (42%), Gaps = 70/336 (20%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+ + PERNV SWTS++ Y+ G + V F ++ +GV ACS+LK+
Sbjct: 193 LLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKN 252
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ ++ + + + ++DM+ KCG + A F+ + G++
Sbjct: 253 LDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDA--------VGRGQKP 304
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
P N+++D Y K ++ VA F ++ + ++++N+M
Sbjct: 305 EPW--------------NAIIDGYCKLGHVDVARSLFDQMGARDVITFNSM--------- 341
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
ITG+ G AL+ F +M + M+ + ++ +L ACA + G+ +H + +
Sbjct: 342 ---ITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQ 398
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
++ +G A L+DMY +CG + +E F M E
Sbjct: 399 RIVEEDVYLGTA----------------LLDMYMKCGRV--DEATAVFHRMG-----ERD 435
Query: 351 MEQYCCMVDLLARAGQFDDTLNF---MKKMPFEPSS 383
+ + M+ LA G D L MK+ F+P+S
Sbjct: 436 VHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTS 471
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 41/212 (19%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----------- 233
LV N L+ YA A F +I K V W ++ G G +E
Sbjct: 141 LVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 200
Query: 234 --------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I G+++ G A+ F+ M+ + P+ +++ G L+AC+++K LG+ +H
Sbjct: 201 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLH 260
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
V + I+++ + +A LIDMY +CG I + + F+ + +
Sbjct: 261 LLVGQKRIRMTDNLVVA----------------LIDMYAKCGDIAQAQA--VFDAVGRGQ 302
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EP + ++D + G D + +M
Sbjct: 303 KPEP----WNAIIDGYCKLGHVDVARSLFDQM 330
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 228/533 (42%), Gaps = 185/533 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ M ER+V SW SM+ +Y G E + L+ +++ G C
Sbjct: 256 VFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC--------------- 299
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
NA VL + C ++ ++ GK IH + + + L
Sbjct: 300 --------NAVALSAVL---LAC---------------AHAGAIQTGKRIH-NQVVRMGL 332
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E ++ V S++D Y+KC +++A F KIK+K+++SW+AM ITG+ +
Sbjct: 333 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAM------------ITGYGMH 380
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ ALE F+ M ++ ++PN I+ VLAAC+
Sbjct: 381 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA------------------------- 415
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+D EG ++ MK+E+ +E +E Y CMVDL
Sbjct: 416 -----------------GLLD-----------EGRYWYNAMKQEFGIEAGVEHYGCMVDL 447
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS--- 407
L RAG D+ + +K+M +P +A C N ++AE + + LFEL+ +S
Sbjct: 448 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYY 507
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
GK++ F GD SH +I
Sbjct: 508 VLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIY 567
Query: 428 EKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPL 470
L +L +++ GY +P G HSEKLA+AF L+++ P S +
Sbjct: 568 SYLEKLLERMQEAGY---VPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 624
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+IKNLR+C DCH+ K+++K EREII+ D RFHHF DG CSC DYW
Sbjct: 625 HIIKNLRVCSDCHTAMKFITKIT----EREIIIRDLQRFHHFKDGLCSCRDYW 673
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 171/647 (26%), Positives = 254/647 (39%), Gaps = 191/647 (29%)
Query: 50 VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+CG +C +F+ + ++ +WT+M+ Y+ E +N F + G
Sbjct: 195 LCGA-VCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLT 253
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----- 154
KA L +GK ++ + ++ V +LDM+ KCG +E A FE
Sbjct: 254 SALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHD 313
Query: 155 ------------------EKDF-------------------------SNLSLLKHGKEIH 171
E+ F +N++ L+ G++IH
Sbjct: 314 DVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIH 373
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+K ES+L V N+LMD YAKCR ++ + FS ++ + VSWN ++ GY GF
Sbjct: 374 NLAIKLG-YESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFA 432
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E+ AL F M M ++ S VL ACA K +IH + +
Sbjct: 433 ED------------ALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS 480
Query: 292 HIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMY---GR-------- 325
T V +LI + WNS+I Y GR
Sbjct: 481 TFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELF 540
Query: 326 ---------------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
CG+ N+G F M ++ ++P+ME Y C+V LL R
Sbjct: 541 DRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGR 600
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------L 405
AG+ D L F+ +P PS C N + +AA + ++EP L
Sbjct: 601 AGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLL 660
Query: 406 SS-----------------------------------GKVHSFIAGDTSHSLVHKISEKL 430
S+ G+VH+F G H + I+ L
Sbjct: 661 SNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAML 720
Query: 431 MRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
L + + GY+ I HSE+LALA+GL T PG P+R++KNL
Sbjct: 721 EWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNL 780
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R C DCH+ K +SK +REII+ D RFHHF +G CSCGDYW
Sbjct: 781 RSCLDCHTMFKVISKIV----QREIIVRDINRFHHFEEGICSCGDYW 823
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 143/379 (37%), Gaps = 107/379 (28%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLI----------VCGVELCAFLG----------MFEKM 65
A QRC + G VHA ++ C L F +F+ M
Sbjct: 49 ARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGM 108
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
PERN S+ ++M Y + G +EE + LF L EG + K + +
Sbjct: 109 PERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLAC 168
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM----------------------------- 146
++ + + NA V ++D + CG +
Sbjct: 169 GIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSEND 228
Query: 147 ----------EMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVN 187
+M F+ F S LK GK IH +K +++ V
Sbjct: 229 IPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTL-YDTEPHVG 287
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D YAKC ++ AH F I ++ W+ +++ YA Q E A
Sbjct: 288 GALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYA------------QSCQNEQAF 335
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E F RM+++ + PN SLSGVL ACA + +LG++IH ++
Sbjct: 336 EMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIK----------------L 379
Query: 308 GLGTGSFVWNSLIDMYGRC 326
G + FV N+L+DMY +C
Sbjct: 380 GYESELFVGNALMDMYAKC 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 165 KHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+ G+ +H +++ + + D N L++FYAK L A F + +++ VS+ ++
Sbjct: 62 RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYAL G EE ALE F R+ + + N L+ +L + L
Sbjct: 122 GYALRGEFEE------------ALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACG 169
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
IH + G +FV +LID Y CGA+
Sbjct: 170 IHACACK----------------LGHDRNAFVGTALIDAYSLCGAV 199
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/542 (27%), Positives = 224/542 (41%), Gaps = 157/542 (28%)
Query: 54 ELCAFLGMFEKMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----ACSEL 108
++CA FE P++ N WT+M+ Y G+ E+ + F + + +
Sbjct: 161 DMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYV 220
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K+ R ++ + ++ + + + + C SNLS L G+
Sbjct: 221 KNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGC---------------SNLSALGFGR 265
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H K L + SL+ Y KC L A FS+++ + +++WNAM++GYA
Sbjct: 266 QVH-QWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA-- 322
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+GDG A+E F +M ++PN I+ VL AC IH
Sbjct: 323 ----------HHGDGREAIELFEKMKSQGVEPNWITFVAVLTAC-----------IH--- 358
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
G C + G + FE M++ Y +E
Sbjct: 359 ----------------------------------TGMC-----DFGMQCFERMQEVYGIE 379
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARH 398
++ Y CMVDLL RAG + ++ ++ MPF+P +S N + AE AA
Sbjct: 380 ARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGK 439
Query: 399 LFELEPLSSGK-------------------------------------------VHSFIA 415
L E P ++G +H F +
Sbjct: 440 LIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFRS 499
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGL 461
D H + I E+L +L +K +GY+ + HSEKLA+AFGL
Sbjct: 500 NDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLAIAFGL 559
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
+ST+PG LR+ KNLR+CGDCH+ K +SK E +REII+ D RFHHF G CSCGD
Sbjct: 560 LSTAPGITLRIFKNLRVCGDCHTAAKLISKIE----DREIILRDTTRFHHFRSGHCSCGD 615
Query: 522 YW 523
YW
Sbjct: 616 YW 617
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 158/644 (24%), Positives = 261/644 (40%), Gaps = 178/644 (27%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+ T+ + + C KL + G+Q+H H++ G EL ++ +F+
Sbjct: 63 SYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFD 122
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS------ELKDHRVGKDV 117
+ R+V S+T+++ Y GY E N+F + + V + E +++ ++
Sbjct: 123 RSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALEL 182
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ M+ + V+ + G +E+ G+++H +
Sbjct: 183 FKEMMKTNVRPDESTMVTVISASARSGSIEL------------------GRQVHSW-IAD 223
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREEITG 236
S+L + N+L+DFY+KC ++ A F + K ++SWN ++ GY L ++E
Sbjct: 224 HGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKE---- 279
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQ 294
AL F M+++ PN +++ +L ACA + +G+ IH Y+ + +
Sbjct: 280 ---------ALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVT 330
Query: 295 LSTGVGIALISIQG---------------LGTGSFVWNSLI---DMYGRCGA-------I 329
++ + +LI + L WN++I M+GR A +
Sbjct: 331 NASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRM 390
Query: 330 QKNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
+KNE G F M Y + P +E Y CM+DLL +G
Sbjct: 391 RKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGL 450
Query: 367 FDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK------- 409
F + + M EP C N ++ E A++LF++EP + G
Sbjct: 451 FKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNI 510
Query: 410 ------------------------------------VHSFIAGDTSHSLVHKISEKLMRL 433
VH FI GD H +I L +
Sbjct: 511 YATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 570
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+++ G++ K HSEKLA+AFGLIST P + L ++KNLR+C
Sbjct: 571 EVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVC 630
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 631 RNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 670
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 34/262 (12%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
L A F I++ +L+ WN M G+AL D +AL+ + MI +
Sbjct: 13 LPYAISVFETIQEPNLLIWNTMFRGHALSP------------DPVSALKLYVCMISLGLL 60
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI----QGLGTGSFV 315
PN+ + +L +CA++K K G +IHG+VL+ +L V +LIS+ + L V
Sbjct: 61 PNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKV 120
Query: 316 WN--SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTL 371
++ S D+ + Y E + ++ P + + M+ G + + L
Sbjct: 121 FDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEAL 180
Query: 372 NFMKKM---PFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISE 428
K+M P + I+ A EL +VHS+IA D KI
Sbjct: 181 ELFKEMMKTNVRPDESTMVTV-ISASARSGSIEL----GRQVHSWIA-DHGFGSNLKIVN 234
Query: 429 KLMRLYSEIKKIGYMKRIPACG 450
L+ YS K G M+ ACG
Sbjct: 235 ALIDFYS---KCGEME--TACG 251
>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 151/590 (25%), Positives = 247/590 (41%), Gaps = 199/590 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV------- 113
+F++MP R++ SW +M+G + G E+ + LF + EG +CSE V
Sbjct: 77 LFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGT--SCSEFTVSSVVCACAAK 134
Query: 114 -----GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MA 149
K ++ + + + N V +LD++ KCG ++ M
Sbjct: 135 CCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMV 194
Query: 150 SGEFEEKDFSNLSLLKH-----------------------------GKEIHPHHLKKDDL 180
+G + + + +L H GK++ K +
Sbjct: 195 AGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTG-I 253
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S++ V +SL+D YAKC ++ A+ FS +++K++V WNA+L +GF+++
Sbjct: 254 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAIL------------SGFSRH 301
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ +F +M Q
Sbjct: 302 VRSLEAMIYFEKMQQ--------------------------------------------- 316
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G+ + S++ G ++K G +YF++M + +N+ P + Y CMVD+
Sbjct: 317 ------MGICPNDITYISVLSACSHLGLVEK--GRKYFDLMIRVHNVSPNVLHYSCMVDI 368
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAG + +F+ +MPF+ +++ C N ++AE AA+HLFE+EP ++G
Sbjct: 369 LGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNH 428
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
KVHSF+ G+ +H + +I
Sbjct: 429 VLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIY 488
Query: 428 EKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVI 473
KL L E+KKIGY + HSEKLAL FG++ G+P+R++
Sbjct: 489 LKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIM 548
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K S EREII+ D RFHHF +G CSCG++W
Sbjct: 549 KNLRICGDCHSFMKLASSIT----EREIIVRDTNRFHHFKNGYCSCGEFW 594
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 28/151 (18%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L +D + +N LM+ Y+KC ++ A F ++ + LVSWN M+ + TQ
Sbjct: 51 LRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSH------------TQ 98
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GD E AL F +M + + ++S V+ ACA K++HG+ L+
Sbjct: 99 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALK--------- 149
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
L + FV +L+D+Y +CG ++
Sbjct: 150 -------TALDSNVFVGTALLDVYAKCGLVK 173
>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Brachypodium distachyon]
Length = 851
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 147/545 (26%), Positives = 216/545 (39%), Gaps = 185/545 (33%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +N +++HG E+H L+ L D +L+D YAKC L A F ++ ++L
Sbjct: 315 KSVANAGMVRHGMEVHCFFLRHG-LVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNL 373
Query: 216 VSWNAMLAG-----------------------------------YALGGFREE------- 233
+WN+++AG Y+L G +
Sbjct: 374 ATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQ 433
Query: 234 ----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
I+G G+ E + FF M + +QP+ +++ +L ACA +
Sbjct: 434 IKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLAL 493
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISI------------------------------- 306
K GKE+H + LR VG ALI +
Sbjct: 494 LKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTG 553
Query: 307 -------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
GL S + +L+ G I EGW YF+ M+ +Y +
Sbjct: 554 LAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLI--TEGWEYFDNMETKYGV 611
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
P E Y CMVDLLAR+G D+ + +++ P +P ++ C N D+AE AAR
Sbjct: 612 VPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAAR 671
Query: 398 HLFELEPLSSGK-------------------------------------------VHSFI 414
+LF LEP +S +H F
Sbjct: 672 NLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFE 731
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAF 459
+ H +I E+LM L +IK GY+ +++ C H+EKLA+ +
Sbjct: 732 VDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLC-HTEKLAITY 790
Query: 460 GLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
GLI S + P+RVIKN RMC DCH K++S R+II+ D RFHHFVDG CS
Sbjct: 791 GLIHSDASRMPVRVIKNTRMCSDCHEVAKHISALCG----RQIILRDAVRFHHFVDGNCS 846
Query: 519 CGDYW 523
C DYW
Sbjct: 847 CNDYW 851
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 47/237 (19%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK-IKQKHLVSWNAM-- 221
+ GK +H H LK +++ LV L YA+ + A + V+W+A+
Sbjct: 186 REGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVA 245
Query: 222 -------------LAGY--------ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
LAG L + ++G ++G AL RM++ + P
Sbjct: 246 CCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGLWP 305
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ ++S +L + A + G E+H + LRH GL ++ +L+
Sbjct: 306 DATTVSSLLKSVANAGMVRHGMEVHCFFLRH----------------GLVPDAYTGTALV 349
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
DMY +CG + R F+ ++ + + +V A AGQF+ L +++M
Sbjct: 350 DMYAKCGRLDCAR--RVFDTLEHRN-----LATWNSLVAGHAYAGQFEAALELVERM 399
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 25/154 (16%)
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVY 118
NV SWTS++ G YE+ N F + +GV +AC+ L + GK+++
Sbjct: 442 NVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELH 501
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSLLKHGKEIHP--- 172
+ + ++ + V ++DM+ K G + A G + K+ + + G +H
Sbjct: 502 CFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSH 561
Query: 173 ------HHLKKDDLESDLLVNNSLMDFYAKCRYL 200
H L + L+ D + +L+ CR +
Sbjct: 562 EAITLFHDLWRSGLKPDSITFTALL---TACRSM 592
>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 793
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 174/699 (24%), Positives = 282/699 (40%), Gaps = 216/699 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+YA + C ++ + LG +H IVCG+ FL +FE
Sbjct: 112 SYAGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESS 171
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV-- 113
E + SW S++ Y +G YEE++ L + G+ K+C ++ V
Sbjct: 172 DELDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSY 231
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------------------------- 146
GK ++ Y + + + V +LDM+ K G +
Sbjct: 232 GKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQ 291
Query: 147 -----------------EMASGEFEEKDFSNLSLLK---------HGKEIHPHHLKKDDL 180
+M + DF+ S++K +GK+IH H + K ++
Sbjct: 292 TEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAH-ICKHNI 350
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+SD + ++L++ Y+ + F+ + +VSW M+AGYA Q
Sbjct: 351 QSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYA------------QN 398
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACA---------QVKGFKLGKEIHGYVLRH 291
G E+AL F ++ + +P+ ++ +L+ACA QV G+ + I +
Sbjct: 399 GQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQ 458
Query: 292 HIQLST-----GVGIALISIQGLGTGSFV-WNSLIDMYGRCG---------------AIQ 330
+ Q+S + A I+ + + V W+ +I + G I
Sbjct: 459 NSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIH 518
Query: 331 KN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
N EG RY+E MKK+Y+M+ ++ C+VDLL+RAG+ D N
Sbjct: 519 PNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKN 578
Query: 373 FMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG-------------- 408
F+ F S DI +H A L EL+P S
Sbjct: 579 FILNSGFGDHPVMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGI 638
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
+VHSF+ GD SH + I +KL + + +K
Sbjct: 639 DLPATKIRELMKDRGIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRK 698
Query: 440 IGYMKR---------------IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
IGY+ + + HSEKLA++FG++S P +P++V+KNLR+C DCH+
Sbjct: 699 IGYIDQKIQNVTISTKEVKGTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHA 758
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +S EK REII+ D+ RFHHF +G+CSC DYW
Sbjct: 759 TMKLISVVEK----REIILRDSLRFHHFKEGSCSCNDYW 793
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 180/430 (41%), Gaps = 113/430 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
+V Y + Q K + G HAH+I C FL +F+
Sbjct: 9 SVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFD 68
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRV 113
+M ER+V S+ ++ Y +G+Y + + LF L +D+ GV AC ++KD +
Sbjct: 69 RMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFAL 128
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD-FSNLS---------- 162
GK ++ I + ++DM+ KC R++ A FE D N+S
Sbjct: 129 GKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYAR 188
Query: 163 ---------------------------------------LLKHGKEIHPHHLKKDDLESD 183
++ +GK +H + +K+ L+ D
Sbjct: 189 VGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQ-GLDLD 247
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V +L+D YAK YL A F +++V +NAM+AG+ E+I Y
Sbjct: 248 IVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQ---TEDIDKECAY--- 301
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ FS+M + ++P+ + S ++ C ++ F+ GK+IH ++ +H+IQ
Sbjct: 302 -EALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQ--------- 351
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLL 361
+ F+ ++LI++Y G+ E K +N P ++ + M+
Sbjct: 352 -------SDEFIGSTLIELYSLLGST---------EDQLKCFNSTPKLDIVSWTTMIAGY 395
Query: 362 ARAGQFDDTL 371
A+ GQF+ L
Sbjct: 396 AQNGQFESAL 405
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 40/226 (17%)
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+F K S++ HGK H H +K L + N+ ++ Y+K + A F ++
Sbjct: 17 QFSSKSGSSI----HGKLAHAHMIKTA-FNPCLFLLNNFLNLYSKWGEMGNAQKLFDRMS 71
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ ++S+N +++GY GF + G FS ++ + S +GVL+A
Sbjct: 72 ERSVISYNILISGYGGMGFYHKAIGL------------FSEARMACLKLDKFSYAGVLSA 119
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
C Q+K F LGK IHG + + GLG F+ N LIDMY +C I
Sbjct: 120 CGQIKDFALGKVIHGLAI----------------VCGLGQQVFLTNLLIDMYCKCERI-- 161
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ FE + N+ + ++ AR G +++ L + KM
Sbjct: 162 DHARLLFESSDELDNVS-----WNSLITGYARVGAYEEMLKLLVKM 202
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/619 (24%), Positives = 265/619 (42%), Gaps = 165/619 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T+T A I C + +++ G+ +H H++ G++ +VF +++ MY+
Sbjct: 222 TITVASILPVCAQSDDVINGVLIHLHVLKHGLD-------------SDVFVSNALINMYS 268
Query: 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY-MISIKFEGN---ACVKRPVL 137
G ++ +F D +D+ + I +E N + R
Sbjct: 269 KFGRLQDAQMVF----------------DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK 312
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
M + R ++ + FS LS + + I ++++ L+ D+++ N+L++ YAK
Sbjct: 313 GMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-T 256
Y+ AH F ++ +K +SWN + +TG+TQ G A++ ++ M +
Sbjct: 373 GYMNCAHTVFDQLPRKDTISWNTL------------VTGYTQNGLASEAIDAYNMMEECR 420
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-------- 308
D PN + ++ A + V + G +IH ++++ + L V LI + G
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480
Query: 309 -------LGTGSFVWNSLIDMYGRCG----AIQ--------------------------- 330
S WN++I G G A+Q
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540
Query: 331 --KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
+EG + F++M+KEY ++P+++ Y CMVDLL RAG + ++ MP +P ++
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSG------------------------------ 408
C N ++ A+ L E++ + G
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
K F G+ +H +I ++L L +++K +GY+
Sbjct: 661 RKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEE 720
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
K HSE+LA+AFG+IST P SP+R+ KNLR+CGDCH+ TKY+S R EREI
Sbjct: 721 DEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYIS----RISEREI 776
Query: 502 IMIDNYRFHHFVDGACSCG 520
++ D+ RFHHF DG CSC
Sbjct: 777 VVRDSNRFHHFKDGICSCA 795
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 71/272 (26%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
F+ + ++N+FSW S++ Y G Y E +N L + C + D Y +
Sbjct: 77 FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL-----FSMCG---GGHLRPDFYTFP 128
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+K ACV L GK++H K E
Sbjct: 129 PILK----ACVS------------------------------LVDGKKVHCCVFKMG-FE 153
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ V SL+ Y++ L VAH F + K + SWNAM I+GF Q G
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM------------ISGFCQNG 201
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ AL +RM ++ +TI+++ +L CAQ G IH +VL+H
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH---------- 251
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
GL + FV N+LI+MY + G +Q +
Sbjct: 252 ------GLDSDVFVSNALINMYSKFGRLQDAQ 277
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 170/635 (26%), Positives = 250/635 (39%), Gaps = 205/635 (32%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL----KDHRV--GK 115
F+ MPERNV SWT+M+ Y G E LF+ + ++ V L + R+ +
Sbjct: 101 FDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEAR 160
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++D M PV D+ R M SG +E G+ L
Sbjct: 161 GLFDIM-------------PVKDV---VARTNMISGYCQE-----------GRLAEAREL 193
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-- 233
+ +++ +++ Y + + VA F + +K+ VSW AML GY GG EE
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEAS 253
Query: 234 -----------------ITGFTQYG----------------DGE---------------T 245
I GF Q G DG
Sbjct: 254 ELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVE 313
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL F+ M + +Q N SL VL+ CA + G+++H +++ V LI+
Sbjct: 314 ALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLIT 373
Query: 306 IQGLGTGSFV----------------WNSLIDMYGRCGAIQK------------------ 331
+ + G V WNS+I Y + G +++
Sbjct: 374 MY-VKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGV 432
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
EG FE MK +Y +EP E Y CMVDLL RAG +D ++ ++K
Sbjct: 433 TFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQK 492
Query: 377 MPFEPSS----------AEPCNPDIAEHAARHLFELEPLSSG------------------ 408
MP E + N ++AE AA+ L +LEP ++G
Sbjct: 493 MPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDV 552
Query: 409 -------------------------KVHSFIAG-DTSHSLVHKISEKLMRLYSEIKKIGY 442
+VH F G T H + I + L +L +++ GY
Sbjct: 553 AELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGY 612
Query: 443 M-------------KRIPACGH-SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+++ + GH SE+LA+AFGL+ G P+RV+KNLR+CGDCHS K
Sbjct: 613 YPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKL 672
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++K REII+ D RFHHF DG CSC DYW
Sbjct: 673 IAKITG----REIILRDANRFHHFKDGFCSCRDYW 703
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 156/601 (25%), Positives = 254/601 (42%), Gaps = 154/601 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ MP R+ S+ +++ + G + +F + EG V AC++L D
Sbjct: 111 IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLD 170
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL---SLLKHG 167
R GK ++ +I GN V + D++ +CG ++ A F+ N+ +L+ G
Sbjct: 171 LRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISG 230
Query: 168 --KEIHP-------HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
K P H ++ +L+ D + +S++ Y + Y+ A F +I++K V W
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
M+ G A Q G E AL FS M+ + +P+ ++S V+++CA++
Sbjct: 291 TIMIVGCA------------QNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASL 338
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
G+ +HG + V AL+ + + T + V WNS+I Y
Sbjct: 339 YHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGY 398
Query: 324 GRCGA-----------IQKN----------------------EGWRYFEMMKKEYNMEPA 350
G +++N EG YF M ++ +EP
Sbjct: 399 ALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPT 458
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEPC--NPDI--AEHAARHLF 400
+ Y CMV+L R+G D ++ + M EP+S C DI E AAR L
Sbjct: 459 PDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLI 518
Query: 401 ELEPLSS-------------------------------------------GKVHSFIAGD 417
EL P ++ +VH F+A D
Sbjct: 519 ELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADD 578
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM-------------KRIPACG-HSEKLALAFGLIS 463
+H I +L RL ++++ G+ +++ + HSEKLALA+GLI
Sbjct: 579 RTHPDAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIK 638
Query: 464 TSPG-SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
G +P+R+IKN+R C DCH K+VS + R +I+ D+ RFHHFV+G CSC DY
Sbjct: 639 KPHGVTPIRIIKNIRTCADCHIFMKFVSNITR----RPVILRDSNRFHHFVEGKCSCKDY 694
Query: 523 W 523
W
Sbjct: 695 W 695
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F D LK +H H K +D ++N L++ YAK + A F ++ Q
Sbjct: 33 FRASDVDQAKRLK--SHMHLHLFKPNDT----FIHNRLLNLYAKSGEISHARKLFDEMTQ 86
Query: 213 KHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRM 253
+ SWNAML+ YA G E+ I+GF G G AL F RM
Sbjct: 87 RDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRM 146
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
+ ++P + VL AC Q+ + GK+IHG ++ I LG
Sbjct: 147 QKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRII----------------ICNLGGNV 190
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
FV N+L D+Y RCG I ++ R F+ M
Sbjct: 191 FVCNALTDLYARCGEI--DQARRLFDRM 216
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 30/131 (22%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------- 50
++ LL M L N T + + C KL +L G VH +
Sbjct: 304 EDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSAL 363
Query: 51 ------CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----- 99
CGV A+ +F M RNV SW SM+G Y + G E ++L+ +++E
Sbjct: 364 VDMYCKCGVTRDAWT-IFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPD 422
Query: 100 -----GVYKAC 105
GV AC
Sbjct: 423 SVTFVGVLSAC 433
>gi|302809831|ref|XP_002986608.1| hypothetical protein SELMODRAFT_124337 [Selaginella moellendorffii]
gi|300145791|gb|EFJ12465.1| hypothetical protein SELMODRAFT_124337 [Selaginella moellendorffii]
Length = 487
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 203/481 (42%), Gaps = 137/481 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+EIH + + E DL V N+L++ YAKC L+VA F K++++ VS N M+A
Sbjct: 23 LAAGREIHEKFIALTEYERDLGVQNALLNMYAKCGSLEVARDIFRKMERRDQVSMNVMIA 82
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+A Q G G+ +++ F M + + + + V+ AC+ + GK
Sbjct: 83 AFA------------QQGLGKDSIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKR 130
Query: 284 IHGYVL-----RHHIQLSTGVGIALISIQG-LGT--------------GSFVWNSLIDMY 323
IH V+ R + V AL+S+ G GT S WN+++
Sbjct: 131 IHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAAC 190
Query: 324 GR---------------CGAIQKNEG------------------WRYFEMMKKEYNMEPA 350
C ++ + + +F++M ++++ PA
Sbjct: 191 AHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPA 250
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLF 400
E Y CMVDLLAR+G+ D M MPF P + + + A AA F
Sbjct: 251 AENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAF 310
Query: 401 ELEP--------LSS------------------------------------GKVHSFIAG 416
LEP LSS G+VH F+AG
Sbjct: 311 NLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAG 370
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH--------------SEKLALAFGLI 462
D+SH KI +L L E+K+ G++ H SEKLA+AFGLI
Sbjct: 371 DSSHPQTDKILRELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLI 430
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
ST G PL V+KNLR+C DCH+ K +SK R R I + D RFH F G CSCGDY
Sbjct: 431 STKSGIPLLVLKNLRVCSDCHAAIKLISKL----RSRVITVRDANRFHRFQSGTCSCGDY 486
Query: 523 W 523
W
Sbjct: 487 W 487
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/581 (26%), Positives = 241/581 (41%), Gaps = 168/581 (28%)
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYD 119
V +W M+ YN + +++ LF + GV ACS+LKD GK +Y
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
Y+ E N ++ ++DMF CG M+ A + F N+
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEA-----QSVFDNMK----------------- 270
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
D++ S++ +A + +A F +I ++ VSW AM+ GY + F +
Sbjct: 271 -NRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYL------RMNRFIE 323
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
AL F M ++++P+ ++ +L ACA + +LG+ + Y+ ++ I+ T V
Sbjct: 324 ------ALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFV 377
Query: 300 GIALISIQ----GLGTGS-----------FVWNSLI-------------DMYGR------ 325
G ALI + +G F W ++I M+
Sbjct: 378 GNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASI 437
Query: 326 ----------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
G ++K G +F M ++ ++P + Y CMVDLL RAG+ ++
Sbjct: 438 TPDEITYIGVLCACTHAGMVEK--GQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------- 406
+ MP +P+S C N +AE AA+ + ELEP +
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIYAA 555
Query: 407 ------------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+G V+ F+AGD SH +I KL + +
Sbjct: 556 CKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQD 615
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+ K GY K HSEKLA+A+ LIS+ PG +R++KNLRMC DC
Sbjct: 616 LIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCVDC 675
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H K VS+A RE+I+ D RFHHF G+CSC ++W
Sbjct: 676 HHMAKLVSEA----YNRELIVRDKTRFHHFRHGSCSCNNFW 712
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/318 (20%), Positives = 129/318 (40%), Gaps = 79/318 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ +P+ +F W +M+ Y+ + + + V+++ L++ S +K R
Sbjct: 63 VFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLML-------ASNIKPDRF------- 108
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ F K F+ L++GK + +H K
Sbjct: 109 -----------------------------TFPFLLKGFTRNMALQYGK-VLLNHAVKHGF 138
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+S+L V + + ++ CR + +A F +V+WN ML+GY + F +
Sbjct: 139 DSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGY------NRVKQFKK- 191
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ F M + + PN+++L +L+AC+++K + GK I+ Y+ + G+
Sbjct: 192 -----SKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYI-------NGGI- 238
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ + N LIDM+ CG + +E F+ MK + + +V
Sbjct: 239 --------VERNLILENVLIDMFAACG--EMDEAQSVFDNMKNR-----DVISWTSIVTG 283
Query: 361 LARAGQFDDTLNFMKKMP 378
A GQ D + ++P
Sbjct: 284 FANIGQIDLARKYFDQIP 301
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 130/355 (36%), Gaps = 61/355 (17%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAMLAGY 225
K+IH H +K L SD L ++ F K+ + + F I Q L WN M+ GY
Sbjct: 24 KQIHSHTIKMG-LSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGY 82
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
++ + + + M+ ++++P+ + +L + + GK +
Sbjct: 83 ------------SRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
+ ++H G + FV + I M+ C R ++ +K +
Sbjct: 131 NHAVKH----------------GFDSNLFVQKAFIHMFSLC---------RLVDLARKVF 165
Query: 346 NMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELE 403
+M A E + M+ R QF + +M S + A L +LE
Sbjct: 166 DMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLE 225
Query: 404 PLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAF-GL 461
GK ++ +I G I E+ + L + + + ACG ++ F +
Sbjct: 226 ---GGKHIYKYINGG--------IVERNLILENVL-----IDMFAACGEMDEAQSVFDNM 269
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY-RFHHFVDG 515
+ S ++ G KY + +R+ MID Y R + F++
Sbjct: 270 KNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEA 324
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 148/533 (27%), Positives = 228/533 (42%), Gaps = 185/533 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ M ER+V SW SM+ +Y G E + L+ +++ G C
Sbjct: 257 VFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKC--------------- 300
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
NA VL + C ++ ++ GK IH + + + L
Sbjct: 301 --------NAVALSAVL---LAC---------------AHAGAIQTGKRIH-NQVVRMGL 333
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E ++ V S++D Y+KC +++A F KIK+K+++SW+AM ITG+ +
Sbjct: 334 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAM------------ITGYGMH 381
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ ALE F+ M ++ ++PN I+ VLAAC+
Sbjct: 382 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHA------------------------- 416
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+D EG ++ MK+E+ +E +E Y CMVDL
Sbjct: 417 -----------------GLLD-----------EGRYWYNAMKQEFGIEAGVEHYGCMVDL 448
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS--- 407
L RAG D+ + +K+M +P +A C N ++AE + + LFEL+ +S
Sbjct: 449 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYY 508
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
GK++ F GD SH +I
Sbjct: 509 VLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIY 568
Query: 428 EKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPL 470
L +L +++ GY +P G HSEKLA+AF L+++ P S +
Sbjct: 569 SYLEKLLERMQEAGY---VPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 625
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+IKNLR+C DCH+ K+++K EREII+ D RFHHF DG CSC DYW
Sbjct: 626 HIIKNLRVCSDCHTAMKFITKIT----EREIIIRDLQRFHHFKDGLCSCRDYW 674
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 174/709 (24%), Positives = 269/709 (37%), Gaps = 241/709 (33%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
+T+ ++ LN LELG Q+H ++ G++ +G +F +
Sbjct: 907 LTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQ 966
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDH-RV 113
M E ++ SW +M+ + G E V +F L+ G V +ACS L +
Sbjct: 967 MNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHL 1026
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------------------ 149
++ + ++ V ++D++ K G+ME A
Sbjct: 1027 ATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIV 1086
Query: 150 SGEFEE------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
SG+F + K L LK GK+I +K+ DL
Sbjct: 1087 SGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKR-GFNLDLF 1145
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V + ++D Y KC ++ A F++I V+W M I+G + G E
Sbjct: 1146 VISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTM------------ISGCVENGQEEH 1193
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL + M + +QP+ + + ++ AC+ + + G++IH ++ +
Sbjct: 1194 ALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD--------- 1244
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEG------------W-----------------R 336
FV SL+DMY +CG I+ G W +
Sbjct: 1245 -------PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQ 1297
Query: 337 YFEMMK-----------------------------------KEYNMEPAMEQYCCMVDLL 361
+FE MK K Y +EP +E Y C+VD L
Sbjct: 1298 FFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDAL 1357
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
+RAG+ + + MPFE S++ C + + + A L LEP S
Sbjct: 1358 SRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYV 1417
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
KVH F+AGD SH I
Sbjct: 1418 LLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYN 1477
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ + I++ GY+ K HSEKLA+A+GL+ T P + LRVIK
Sbjct: 1478 KVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIK 1537
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ KY+SK ERE+++ D RFHHF G CSCGDYW
Sbjct: 1538 NLRVCGDCHNAIKYISKV----FEREVVLRDANRFHHFRSGVCSCGDYW 1582
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 27/187 (14%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ D+ V +L++ YAK ++ A F + + +V WN M+ Y G E
Sbjct: 758 LQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYE------ 811
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST-G 298
AL FS +T ++P+ ++L C + K + + + L+ QL G
Sbjct: 812 ------ALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVLEWQLK---QLKAYG 856
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+ + G+ WN + + +Q+ E W + N A + +V
Sbjct: 857 TKLFMYDDDDDGSDVIAWNKTLSWF-----LQRGETWEAVDCFVDMINSRVACDGLTFVV 911
Query: 359 DLLARAG 365
L AG
Sbjct: 912 MLSVVAG 918
>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 169/636 (26%), Positives = 259/636 (40%), Gaps = 190/636 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ + C L ++ G Q H V G + F+ +F+++
Sbjct: 78 SFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI 137
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+RN+ SWTSM+ Y++ G + V+LF KD + ++ D + +
Sbjct: 138 PKRNIVSWTSMIRGYDLNGNALDAVSLF---------------KDLLIEENDDDATMFLD 182
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G ++ + C R+ A G E IH +K+ + +
Sbjct: 183 SMG-------MVSVISACSRVA-AKGLTES--------------IHSFVIKRG-FDRGVS 219
Query: 186 VNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+D YAK + VA F +I K VS+N++++ YA G E
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE---------- 269
Query: 244 ETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A + F R+I+ + N I+LS VL A + ++GK IH V+R ++ VG +
Sbjct: 270 --AFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327
Query: 303 LISIQ----GLGTGSFV-----------WNSLIDMYGRCGAIQK---------------- 331
+I + + T W ++I YG G K
Sbjct: 328 IIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+ GW +F MK + +EP +E Y CMVDLL RAG + +
Sbjct: 388 YITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
+KM EP S C N ++AE + LFEL+P +
Sbjct: 448 QKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWK 507
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+G+VH F+ GD H KI E L L ++ + G
Sbjct: 508 DVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAG 567
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K + HSEKLA+AFG+++T PGS + V+KNLR+C DCH+ K
Sbjct: 568 YVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIK 627
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +RE ++ D RFHHF DG CSCGDYW
Sbjct: 628 LISKIV----DREFVVRDAKRFHHFKDGFCSCGDYW 659
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 169/669 (25%), Positives = 279/669 (41%), Gaps = 175/669 (26%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP 66
L +++ L +P + AL P++NNL+ +AH +F+ +
Sbjct: 36 ALSIKTASLNHPSVSSRLLALYAD--PRINNLQ-----YAH------------SLFDWIQ 76
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLF-YLLID--------EGVYKACSELKDHRVGKDV 117
E + SW ++ Y + + LF LL D V K C+ L + GK +
Sbjct: 77 EPTLVSWNLLIKCYIENQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGALQEGKQI 136
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHG----KEI 170
+ ++ I F + V ++ M+ KCG +E+ F E+KD + + L G EI
Sbjct: 137 HGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEI 196
Query: 171 H-PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ ++ E D L+D +K L+ A F ++ ++ VSWNAM+ GY G
Sbjct: 197 ELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAG 256
Query: 230 -------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ ITG+ + AL+ F M++ D+ PN ++ G ++
Sbjct: 257 DSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVS 316
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS------------------------- 305
A + + G+ +H Y+++ + +G LI
Sbjct: 317 AASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH 376
Query: 306 ----IQGLGTGSFVWNSL--IDMYGRCG----AIQ-------------KNEGWRYFEMMK 342
I GLG V +L D R G AI + RYF+MM
Sbjct: 377 WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMT 436
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIA 392
+Y ++P++E Y C++D+L RAG ++ + +++MP + + S + N +
Sbjct: 437 YDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMG 496
Query: 393 EHAARHLFELEPLSSG-------------------------------------------K 409
E+AA+HL +L P ++G
Sbjct: 497 EYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGS 556
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---KRIPAC------------GHSEK 454
+H FI GD SH +I KL + ++ G++ ++ C HSE+
Sbjct: 557 IHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSER 616
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+AFGL++ GSP+R+IKNLR+C DCH+ TK +S REII+ D RFHHF
Sbjct: 617 LAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHI----YNREIIIRDGSRFHHFKS 672
Query: 515 GACSCGDYW 523
G+CSC D+W
Sbjct: 673 GSCSCKDFW 681
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 170/659 (25%), Positives = 265/659 (40%), Gaps = 201/659 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ +P+ + + ++++ + G E + L+ L G V KAC D
Sbjct: 88 LFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGD 147
Query: 111 HRVGKDVYDY-----MISIKFEGNA---------CVK--RPVLD---------------M 139
K+V+D M+S F GNA CV+ R V D
Sbjct: 148 ASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSC 207
Query: 140 FIKCGRMEMASGEFEEKDF-----------------SNLSLLKHGKEIHPHHLKKDDLES 182
++ CG + F E + S L LK G+ IH ++ +E
Sbjct: 208 YVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIE- 266
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY--------ALGGFRE-- 232
++ V ++L+ YA+C +K A F + + +VSWN +L Y L F +
Sbjct: 267 NVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMS 326
Query: 233 -------------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
I G + G E A+E +M +PN I++S L AC+ ++ +
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLR 386
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLI---D 321
+GKE+H YV RH + AL+ + L F WN++I
Sbjct: 387 MGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANA 446
Query: 322 MYGRC------------GAIQKN------------------EGWRYFEMMKKEYNMEPAM 351
M+G I+ N EG + F M +++ +EP
Sbjct: 447 MHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDA 506
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFE 401
Y CMVD+ +RAG+ + F+++MP EP+++ C N ++A+ +A LFE
Sbjct: 507 NHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFE 566
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
+EP + G +VH+F+ GD
Sbjct: 567 IEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDK 626
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
++ KI L L ++K GY K C HSEKLA+AFG+++
Sbjct: 627 NNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNL 686
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ S +RV KNLR+CGDCH+ KYVSK II+ D+ RFHHF +G CSC D W
Sbjct: 687 NGQSSIRVFKNLRICGDCHNAIKYVSKVVG----VTIIVRDSLRFHHFRNGNCSCQDLW 741
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 151/579 (26%), Positives = 237/579 (40%), Gaps = 183/579 (31%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
FE MP ++ SW +M+ + ++ +LF ++ + V ++
Sbjct: 59 AFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVV--------------TWN 104
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
MIS +++CG ++ A FE+ F ++
Sbjct: 105 AMIS---------------GYVECGDLDSALKLFEKAPFKSV------------------ 131
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ +++ Y K + +A F K+ +K+LV+WNAM+AGY +
Sbjct: 132 -----VAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGY------------IE 174
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
E ++ F M+ +QPN+ +LS L C+++ +LG+++H V + + T
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTA 234
Query: 300 GIALIS---------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEG---------- 334
G +LIS +Q WN++I Y + G +K G
Sbjct: 235 GTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGM 294
Query: 335 ---W--------------------RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
W +YF M K+Y + + Y CMVDLL RAG+ + +
Sbjct: 295 KPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAV 354
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS-------------- 407
+ ++KMPF+P +A C N ++AE A++ L L+P S+
Sbjct: 355 DLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATK 414
Query: 408 -----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
H F +GD H + I KL L ++K
Sbjct: 415 RWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMK 474
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY+ K HSEKLA+A+GLI PG+P+RV KNLR+CGDCH
Sbjct: 475 LAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHR 534
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+S+ E+ REII+ D RFHHF DG CSC DYW
Sbjct: 535 AIKYISQIER----REIIVRDTTRFHHFKDGHCSCADYW 569
>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
Length = 312
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/381 (31%), Positives = 166/381 (43%), Gaps = 136/381 (35%)
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ K++VSWNAM+ GY + +G GE AL F++M Q ++PN I+ VL
Sbjct: 1 MSNKNVVSWNAMIVGYGM------------HGHGEDALVLFTQMQQRGVKPNEITFISVL 48
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+AC+ L+D
Sbjct: 49 SACSHA------------------------------------------GLVD-------- 58
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE---- 385
EGW+ + M +Y + P +E Y CMVDLL RAG ++ +F++KMP EP ++
Sbjct: 59 ---EGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAF 115
Query: 386 ------PCNPDIAEHAARHLFELEPLSSG------------------------------- 408
CN ++ E A L L+P ++G
Sbjct: 116 LGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVK 175
Query: 409 ------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-------------- 442
K+HSF+ GD SH I L L +++ +GY
Sbjct: 176 KSPGCSLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEE 235
Query: 443 MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
+K HSEKLA+AFGLIST G+ +R+ KNLR+CGDCHS TK++SK K REII
Sbjct: 236 IKENMLFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVK----REII 291
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
M D RFHHF DG CSCGDYW
Sbjct: 292 MRDLNRFHHFKDGLCSCGDYW 312
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 212/474 (44%), Gaps = 136/474 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+E+H H +++ +++D +V ++L D YAK L A F ++ + +VSW AML Y
Sbjct: 181 GRELHCHVVRRG-IDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRY- 238
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
F DGE F RM+++ + PN + +GVL ACA+ KLGK++HG
Sbjct: 239 ----------FDAGRDGE-GFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHG 287
Query: 287 YVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK 331
+ + S G AL+ + +GT V W ++I Y + G Q
Sbjct: 288 RMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNG--QP 345
Query: 332 NEGWRYFEMM-----------------------------------KKEYNMEPAMEQYCC 356
+E F+M+ K +Y +E + Y C
Sbjct: 346 DEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYAC 405
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLS 406
++DLL+R+G F+ + + MP +P S C N +A AA LFE+EP +
Sbjct: 406 VIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPEN 465
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
+VH F+ GD SH
Sbjct: 466 PATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQA 525
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
+I L +LY ++++ GY+ K+ HSE+LA+AFG+I+T GSP
Sbjct: 526 EEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSP 585
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++V KNLR+CGDCH+ K +SK +REII+ D+ RFHHF +G+CSC DYW
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIV----QREIIVRDSNRFHHFKNGSCSCRDYW 635
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 146/533 (27%), Positives = 223/533 (41%), Gaps = 155/533 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGKDVYD 119
+FEKMP+R+V +W M+ G +E +LF + + V S + + + GK
Sbjct: 185 LFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEA 244
Query: 120 YMISIKFE--GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ K E G C + V+ + C ++L L G IH + +
Sbjct: 245 IHLFAKMEEAGVKCNEVTVVAVLAAC---------------ADLGALDLGMRIHEYS-NR 288
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ ++ ++N+L+D Y KC L+ A F +++++ +VSW+AM I G
Sbjct: 289 HGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAM------------IGGL 336
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
+G E AL FS M Q ++PN ++ G+L AC+
Sbjct: 337 AMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSH----------------------- 373
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ LIS EG R+F M ++Y + P +E Y CM
Sbjct: 374 ---MGLIS---------------------------EGRRFFASMTRDYGIIPQIEHYGCM 403
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS 407
VDLL+RAG + F+ MP +P+ C N ++AE A +HL EL+PL+
Sbjct: 404 VDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLND 463
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G VH F+AG+ SH
Sbjct: 464 GYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTE 523
Query: 425 KISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPL 470
+I ++ L E++ GY+ HSEKLAL FGL++T +P+
Sbjct: 524 QIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPI 583
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R++KNLR+C DCHS K +S REI++ D RFH F D +CSC DYW
Sbjct: 584 RIMKNLRICEDCHSAFKLISAIVN----REIVVRDRNRFHCFNDNSCSCRDYW 632
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 23/133 (17%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A+ F R+ Q D+ P+T + S VL AC + G+ +HG V +
Sbjct: 112 AIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVEK--------------- 156
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G + ++ N ++ +Y CG + E FE M + + + M+ L + G
Sbjct: 157 -VGFRSNLYLQNMIVHLYASCG--EMGEARLLFEKMPQR-----DVVTWNIMIAQLIKQG 208
Query: 366 QFDDTLNFMKKMP 378
+ + +MP
Sbjct: 209 DHEGAYDLFSRMP 221
>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
Length = 1009
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 136/481 (28%), Positives = 215/481 (44%), Gaps = 135/481 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
++L+L GKEIH + L+ + E ++ V+++L+D YAKC + A+ F +I ++ VSW
Sbjct: 548 ADLNLWCQGKEIHGYTLR-NGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSW 606
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
NA++AGY EE AL+ F M+ +QP++I+ + AC +
Sbjct: 607 NALMAGYINNKQPEE------------ALKLFLEMLGEGLQPSSITFMILFPACGDIAAI 654
Query: 279 KLGKEIHGYVLRHHI-QLSTGVGIALI--------------------------------- 304
+ G+ +HGY + + +L + ALI
Sbjct: 655 RFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISA 714
Query: 305 -SIQGLGTGSF----------------VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
S+ G+ +F + SL+ R G ++ EGW+YF M+ Y +
Sbjct: 715 FSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVE--EGWKYFNSMEISYGV 772
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
+E Y CMV +L AG D+ L+F+++MP+ P + + C NP+I E AA+
Sbjct: 773 AATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAK 832
Query: 398 HLFELEP-------------LSSG------KVHSFI------------------------ 414
LFELEP +SSG + SF+
Sbjct: 833 ALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHXCTFK 892
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP------------ACGHSEKLALAFGLI 462
G++SH + +I E L +++ GY P +C H+EKLA+ FG+I
Sbjct: 893 GGESSHPELEEILETWDXLARKMELSGYFPLDPVFDDEEKELDPFSCLHTEKLAICFGII 952
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
S++ P+ V KN+RMC DCH+ K +SK + REI + D +HH DG C C D
Sbjct: 953 SSNXYRPVHVSKNIRMCIDCHTSAKLISKIDG----REIFVKDVCFYHHMKDGICXCQDR 1008
Query: 523 W 523
W
Sbjct: 1009 W 1009
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 175/402 (43%), Gaps = 67/402 (16%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV--CGVE--LCAFLGMF 62
T + S+ L N + I R KLN L+ + L+V C + L +
Sbjct: 81 TEISDSISLLNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLL 140
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHR 112
+++P R V ++ +++ Y ++E+ + F L++ EG + KACS + R
Sbjct: 141 DEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXR 200
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLS------- 162
+GK V+ ++I E + V ++ + CG + + F +E+D + +
Sbjct: 201 IGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYM 260
Query: 163 ---LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV--- 216
L K I H ++ D ++ DL+ ++L+ +A+ + +A ++ ++ L
Sbjct: 261 EEGLXDEAKHIF-HLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTV 319
Query: 217 -SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
SWN +++G G+ E+ AL+ FSRM+ PN I+++ +L AC +
Sbjct: 320 NSWNGIISGCVQNGYLED------------ALDMFSRMLWYPEDPNIITIASILPACTGL 367
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
K +LGK IH +H G+ +V S+IDMY +CG+ E
Sbjct: 368 KALRLGKAIHXIAXKH----------------GIVGNVYVEGSVIDMYSKCGSYDYAE-- 409
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
++ K N AM + M+ G+ +D L ++ M
Sbjct: 410 ---KVFXKAENKNTAM--WNEMIAAYVNEGKVEDALGLLRSM 446
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 46/298 (15%)
Query: 59 LGMFEKMPER----NVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKA 104
L E+MPER V SW ++ GY E+ +++F ++ + A
Sbjct: 304 LETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPA 363
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL- 163
C+ LK R+GK ++ GN V+ V+DM+ KCG + A F + + N ++
Sbjct: 364 CTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMW 423
Query: 164 -------LKHGKEIHP----HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
+ GK ++KD + D++ N+++ +A+ A S++ Q
Sbjct: 424 NEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQ 483
Query: 213 ----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268
++VS+N +++G+ G E + + + ++ M+PN I+++G
Sbjct: 484 MGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGA 543
Query: 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
L ACA + + GKEIHGY LR+ G FV ++L+DMY +C
Sbjct: 544 LPACADLNLWCQGKEIHGYTLRN----------------GFEPNIFVSSALVDMYAKC 585
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 34/172 (19%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+ T+T AL C LN G ++H + + G E F+
Sbjct: 535 PNPITITGAL--PACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSAN 592
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F ++ RN SW ++M Y EE + LF ++ EG ++ AC ++
Sbjct: 593 KVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIA 652
Query: 110 DHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGRMEMASGEFE---EKD 157
R G+ ++ Y + E + ++DM+ KCG + A F+ EKD
Sbjct: 653 AIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKD 704
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 166/669 (24%), Positives = 269/669 (40%), Gaps = 209/669 (31%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP 66
L+L+ ++L NP + C L++L++ +HAHLI
Sbjct: 6 NLVLRKLELKNPKLS------FLESCTTLSHLKI---IHAHLIRAHTIF----------- 45
Query: 67 ERNVFSWTSMMGMY---NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD---VYDY 120
+VF+ + ++ + N+L Y ++ FY + + ++ S ++ KD + +
Sbjct: 46 --DVFAASCLISISINKNLLDYAAQV---FYQIQNPNLFIYNSFIRGFSGSKDPDKSFHF 100
Query: 121 MISIKFEG------------NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
+ K G AC ++ LDM I+ A G+ +++HG
Sbjct: 101 YVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQ------AHGQ----------IIRHG- 143
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+SD+ V NSL+ Y+ +K A F +I +VSW +M+AGY
Sbjct: 144 -----------FDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192
Query: 229 G-------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
G + I+G+ + + A+E + + + N + V+
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSF 314
A+CA + +LG+ H Y+LR+ + ++ +G AL+ + Q G +
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312
Query: 315 VWNSLIDMYGRCGAIQK---------------------------------NEGWRYFEMM 341
W +LI + G +K G FE M
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDI 391
K++Y +EP +E Y CMVDLL RAG+ + F+ +MP +P++ C N +I
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
AE A + L EL+P SG
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
KVH F GD +H + +I + +I+ GY K HSEK
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEK 552
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+A+ ++ T P+R++KNLR+C DCH+ TK +SK ERE+I+ D RFHHF
Sbjct: 553 LAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKV----YERELIVRDRNRFHHFKG 608
Query: 515 GACSCGDYW 523
GACSC DYW
Sbjct: 609 GACSCMDYW 617
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 164/635 (25%), Positives = 250/635 (39%), Gaps = 189/635 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+F++M ERN+ SW +++ Y G +++ +F +++ G ++
Sbjct: 67 VFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSG 126
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+GK ++ + I NA V + +M++KCG +E A FE
Sbjct: 127 LEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVG 186
Query: 155 ----EKDFSNLSL----------------------------LKHGKEIHPHHLKKDDLES 182
E+ L+L L G++IH H + K LES
Sbjct: 187 YTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGH-IVKLGLES 245
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ V L+DFY KC L+ A F I + + VSW+A+ ITG+ Q G+
Sbjct: 246 EVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSAL------------ITGYCQMGE 293
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI---QLSTGV 299
E AL+ F + + N+ + + + AC+ + F G + H ++ + Q
Sbjct: 294 FEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESA 353
Query: 300 GIALISIQG---LGTGSF---------VWNSLIDMYGRCG---------------AIQKN 332
I + S G T F W ++I Y G ++ N
Sbjct: 354 MITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPN 413
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG +Y E M Y + ++ Y CMVD+ +RAG + L +
Sbjct: 414 AVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELI 473
Query: 375 KKMPFEPSS-AEPC---------NPDIAEHAARHLFELEPLSS----------------- 407
+ MPF P + + C N +I E AA +LF+L+P +
Sbjct: 474 RSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWK 533
Query: 408 --------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK-- 439
GKVH FI GD H +I KL L + K
Sbjct: 534 EAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEE 593
Query: 440 IGYM-----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
G + ++ HSE+LALAFGLIST +P+ V KNLR C DCH K
Sbjct: 594 TGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFGKQ 653
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VS REI++ D++RFHHF G CSC DYW
Sbjct: 654 VSLITG----REIVVRDSFRFHHFKLGECSCNDYW 684
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 28/149 (18%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+ NS++ Y KC L A F ++++++LVSWN +++ YA G ++ GF
Sbjct: 46 FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDK--GFC------ 97
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
FS M++ + +PN + G L + G ++GK+IH + +R
Sbjct: 98 ----MFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIR-------------- 139
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
GLG+ + V ++ +MY +CG ++ E
Sbjct: 140 --SGLGSNASVNTAISNMYVKCGWLEGAE 166
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM------------------FEKM 65
++++ + C L L G Q+H H++ G+E +G FE +
Sbjct: 214 VFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWI 273
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
E N SW++++ Y +G +EE + F L V ++ACS L D G
Sbjct: 274 SEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGA 333
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
+ I + ++ M+ +CGR++ A+ FE D
Sbjct: 334 QAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESID 375
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 139/473 (29%), Positives = 201/473 (42%), Gaps = 132/473 (27%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ H L + D N+L+ +A+ + A F ++ +++ VSW+AM
Sbjct: 142 GRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAM----- 196
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G+ Q GDG AL FS+M ++P+ L GVLAACAQ+ + GK +HG
Sbjct: 197 -------VNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHG 249
Query: 287 YVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLID---MYGR--- 325
Y+ ++I+++ +G AL+ + LG F W ++I M+GR
Sbjct: 250 YLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSD 309
Query: 326 ------------------------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
C ++G F M Y ++P +E Y CMV
Sbjct: 310 SLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMV 369
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEPLSSG 408
DLLAR G + + ++KMP +P + C N ++AE+ +H ELEP SG
Sbjct: 370 DLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDKSG 429
Query: 409 K-------------------------------------------VHSFIAGDTSHSLVHK 425
+H FI GD SH +
Sbjct: 430 AYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKD 489
Query: 426 ISEKLMRLYSEIK-KIGYMK--------------RIPACGHSEKLALAFGLISTSPGSPL 470
I K + S I+ + GY+ HSEKLA+AF LIST P+
Sbjct: 490 ILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTEDYMPI 549
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R++KNLR+C DCH TK +SK REII+ D RFH F DG CSC DYW
Sbjct: 550 RIVKNLRVCQDCHHVTKLISKVYG----REIIVRDRTRFHLFKDGTCSCKDYW 598
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 137/472 (29%), Positives = 201/472 (42%), Gaps = 134/472 (28%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H + K + E V +L+D Y K ++ A FS I K +V+W+AMLAGYA
Sbjct: 18 EVHAQ-VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA-- 74
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGY 287
Q G+ E A++ F + + ++PN + S +L CA GK+ HG+
Sbjct: 75 ----------QTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGF 124
Query: 288 VLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK- 331
++ + S V AL+++ + + V WNS+I Y + G K
Sbjct: 125 AIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKA 184
Query: 332 --------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
EG +YF++M ++ + P E CMVD
Sbjct: 185 LDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVD 244
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG- 408
L +RAGQ + + ++ MP S C ++ AA + ++P S
Sbjct: 245 LYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAA 304
Query: 409 ------------------------------------------KVHSFIAGDTSHSLVHKI 426
K +SF+AGD SH L +I
Sbjct: 305 YVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQI 364
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
KL L + +K +GY K HSE+LA+AFGLI+T GSPL +
Sbjct: 365 YMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLI 424
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF-VDGACSCGDYW 523
IKNLR+CGDCH K ++K E EREI++ D+ RFHHF DG CSCGD+W
Sbjct: 425 IKNLRVCGDCHLVIKLIAKIE----EREIVVRDSNRFHHFSSDGVCSCGDFW 472
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 158/613 (25%), Positives = 257/613 (41%), Gaps = 191/613 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
TY + + C L +E G+++H+H + G+E F+ +F M
Sbjct: 111 TYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGK 115
R+V +W +M+ ++ G ++ V L + +EG V C L R
Sbjct: 171 SHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIF 230
Query: 116 DV--------YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF--------- 158
DV + MI + + C+K LD+F RM SG + D
Sbjct: 231 DVMGVRNEVSWSAMIG-GYVASDCMKE-ALDIF----RMMQLSGI--DPDLTTMLGVLPA 282
Query: 159 -SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
S+L+ L+HG H + + + +D L+ N+L+D Y+KC + A F+++ + +VS
Sbjct: 283 CSHLAALQHGFCSHGYLIVRG-FATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVS 341
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WNAM+ GY + G G AL F ++ ++P+ I+ +L++C+
Sbjct: 342 WNAMIIGYGIHGL------------GMEALGLFHDLLALGLKPDDITFICLLSSCS---- 385
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
+S + M GR +
Sbjct: 386 ---------------------------------------HSGLVMEGRL----------W 396
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC---- 387
F+ M +++++ P ME CMVD+L RAG D+ +F++ MPFEP + C
Sbjct: 397 FDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHK 456
Query: 388 NPDIAEHAARHLFELEPLSSGK-------------------------------------- 409
N ++ E ++ + L P S+G
Sbjct: 457 NIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWI 516
Query: 410 -----VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACG 450
VH+F+ GD SH + +I+ KL L E+K++GY K
Sbjct: 517 EINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLY 576
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+AFG+++ G P+ V KNLR+CGDCH+ K+++ K REI + D RFH
Sbjct: 577 HSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITK----REITVRDANRFH 632
Query: 511 HFVDGACSCGDYW 523
HF +G C+CGD+W
Sbjct: 633 HFKNGTCNCGDFW 645
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 41/225 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K+IH H LK +D V + L Y C + +A F +I ++ WN ++
Sbjct: 24 LTEAKKIHQHFLKNTS-NADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIR 82
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
YA G + A++ + M+ ++PN + VL AC+ + + G E
Sbjct: 83 AYAWN------------GPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK- 342
IH + + GL + FV +L+D Y +CG + E R F M
Sbjct: 131 IHSHA----------------KMFGLESDVFVCTALVDFYAKCGILV--EAQRLFSSMSH 172
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE---PSSA 384
++ AM C + G DD + + +M E P+S+
Sbjct: 173 RDVVAWNAMIAGCSLY------GLCDDAVQLIMQMQEEGICPNSS 211
>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
Length = 1166
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 144/472 (30%), Positives = 197/472 (41%), Gaps = 132/472 (27%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LLKHG IH H + ESD V NSL+ YAKC L ++ F + K ++WNAM+
Sbjct: 616 LLKHGMPIHAH-IVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMV 674
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
A A +G GE AL+ F M + + S SG LAA A + + G+
Sbjct: 675 AANA------------HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQ 722
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCG 327
++HG V++ + V A + + G + WN LI + R G
Sbjct: 723 QLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHG 782
Query: 328 AIQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
QK +EG Y++ M +E+ + P +E
Sbjct: 783 CFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHC 842
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEP 404
C++DLL R+G+ F+K+MP P S C N ++A A HL EL+P
Sbjct: 843 VCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDP 902
Query: 405 -------------LSSGK------------------------------VHSFIAGDTSHS 421
+SGK VHSF G+ H
Sbjct: 903 SDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHP 962
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+IS KL L K+ GY+ K HSE+LALAFGLI+T
Sbjct: 963 QASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPES 1022
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
S LR+ KNLR+CGDCHS K+VS R+I++ D YRFHHF G CSC
Sbjct: 1023 STLRIFKNLRVCGDCHSVYKFVSGIVG----RKIVLRDPYRFHHFSGGKCSC 1070
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 165/422 (39%), Gaps = 110/422 (26%)
Query: 41 GIQVHAHLIVCGV--------ELCAFLG----------MFEKMPERNVFSWTSMMGMYNV 82
G QVH ++ G+ L F G +FE+MP+ NV SWTS+M Y+
Sbjct: 215 GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSD 274
Query: 83 LGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACV 132
G E++N++ + EG V +C L+D +G V ++I FE + V
Sbjct: 275 SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 334
Query: 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNL------------------SL----------- 163
++ MF +E A F+ + ++ SL
Sbjct: 335 ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 394
Query: 164 -------------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204
LK G+ IH + K L+S++ + N+L+ Y++ + A
Sbjct: 395 ETNSTTLSSLLSVCSSVDNLKWGRGIHG-LVVKLGLDSNVCICNTLLTLYSEAGRSEDAE 453
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
F + ++ L+SWN+M+A Y Q G L+ + ++Q N ++
Sbjct: 454 LVFQAMTERDLISWNSMMACY------------VQDGKCLDGLKILAELLQMGKVMNHVT 501
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-LG------------- 310
+ LAAC+ + K +H ++ VG AL+++ G LG
Sbjct: 502 FASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP 561
Query: 311 -TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
WN+LI G + NE + +++++++ PA Y MV +L DD
Sbjct: 562 QPDRVTWNALIG--GHAENEEPNEAVKAYKLIREK--GIPA--NYITMVSVLGACSAPDD 615
Query: 370 TL 371
L
Sbjct: 616 LL 617
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/385 (19%), Positives = 144/385 (37%), Gaps = 104/385 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+A + C L + LG QV H+I G E + +F+ M
Sbjct: 299 TFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHM 358
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKDHRVGK 115
E ++ SW +M+ Y G E + F+ + + CS + + + G+
Sbjct: 359 NECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR 418
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLS---------- 162
++ ++ + + N C+ +L ++ + GR E A F+ E+D + +
Sbjct: 419 GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDG 478
Query: 163 -----------LLKHGKEIH-------------PHHLKKDDL----------ESDLLVNN 188
LL+ GK ++ P L + + L+V N
Sbjct: 479 KCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGN 538
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y K + A + Q V+WNA++ G+A + + A++
Sbjct: 539 ALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHA------------ENEEPNEAVK 586
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+ + + + N I++ VL AC+ K G IH +++ +
Sbjct: 587 AYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIV----------------LT 630
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKN 332
G + +V NSLI MY +CG + +
Sbjct: 631 GFESDDYVKNSLITMYAKCGDLNSS 655
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
D I+C + + F K FS ++ GK +H + + + N+L++ Y+K
Sbjct: 88 DYGIRC----LNAVNFPLKGFSEITSQMAGKALHAFCIV-GSVNLGIFQTNTLINMYSKF 142
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
++ A F +++ ++ SW+ ML+GY G EE G F +M
Sbjct: 143 GNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVG------------LFCQMWGLG 190
Query: 258 MQPNTISLSGVLAACAQVKGFKL--GKEIHGYVLRHHIQLSTGVGIALISIQG 308
++PN ++ ++ AC++ G+ G ++HG+V++ I VG AL+ G
Sbjct: 191 VEPNGFMVASLITACSR-SGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYG 242
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 211/483 (43%), Gaps = 141/483 (29%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAML 222
L GK++H H LK E D + NSL+ FYA C YL+ A F ++ + +++VSWN M+
Sbjct: 101 LFEGKQVHAHVLKLG-FELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSWNVMI 159
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
YA + GD + L F M++ +P+ ++ V+ AC + LG
Sbjct: 160 DSYA------------KVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGM 206
Query: 283 EIHGYVLRH---HIQLSTGVGIALISI--------------QGLGTGSFV-WNSLI---- 320
+H +VL+ ++ V L+ + +G+ WNS+I
Sbjct: 207 WVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFA 266
Query: 321 ---------DMYGRCGAIQK---------------------NEGWRYFEMMKKEYNMEPA 350
D + R ++K +EG YFEMM KEYN+EP+
Sbjct: 267 VHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPS 326
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-----------EPCNPDIAEHAARHL 399
+ Y C+VDL ARAG + LN + +MP +P + + + +++E A+ +
Sbjct: 327 LVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSLLDACYKQHASVELSEEMAKQI 386
Query: 400 FE----------------------------LEPLSS----------------GKVHSFIA 415
FE L L + G H F A
Sbjct: 387 FESNGSVCGGAYVLLSKVYASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFA 446
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFG 460
GDT+H I + + + +++ +GY+ K+ HSE+LA+AFG
Sbjct: 447 GDTNHPQSKDIYKFMNEIQEKLESVGYLPDYSGAPLIDEINEGKQNTMRLHSERLAIAFG 506
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
L+++ P P+RV KNLR+C DCH TK +S R EII+ D RFHHF DG+CSC
Sbjct: 507 LLNSKPSMPIRVFKNLRVCNDCHKVTKLIS----RIYNVEIIVRDRVRFHHFKDGSCSCM 562
Query: 521 DYW 523
DYW
Sbjct: 563 DYW 565
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 89/216 (41%), Gaps = 39/216 (18%)
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK-IKQKHLVSWNAMLAGYALGGF 230
P + + +++ N L++ ++K H + + I + +WN ++ Y+
Sbjct: 2 PLSIATTNTNTNIKHINHLLNQSNSISHVKQIHAQILRTIHTPNSFTWNILIQSYSKSTL 61
Query: 231 REEITGFTQYGDGETALEFFSRMI---QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
++ A+ + +I + ++ P+ + VL ACA + GK++H +
Sbjct: 62 HKQ-----------KAILLYKAIITEQENELFPDKHTYPFVLKACAYLFSLFEGKQVHAH 110
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
VL+ +L T ++ NSLI Y CG ++ + F+ M + N
Sbjct: 111 VLKLGFELDT----------------YICNSLIHFYASCGYLETAR--KVFDRMCEWRN- 151
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKM--PFEP 381
+ + M+D A+ G +D L +M +EP
Sbjct: 152 ---VVSWNVMIDSYAKVGDYDIVLIMFCEMMKVYEP 184
>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
[Vitis vinifera]
Length = 657
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 162/640 (25%), Positives = 267/640 (41%), Gaps = 178/640 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMP 66
++ + Q C N+L LG Q+H+ +I G +L + +F MP
Sbjct: 55 FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS--I 124
+N+ S ++ Y G + +F E+ + V ++ M++ I
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMF------------DEMPERNVA--TWNAMVAGLI 160
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDL 180
+FE N L +F + + EF + + L L G+++H + ++K
Sbjct: 161 QFEFN----EEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGY-VRKCGF 215
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E +L+V +SL Y KC L + +++V+WN ++AG A G+ EE+
Sbjct: 216 EFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEV------ 269
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L+ ++ M +P+ I+ V+++C+++ G++IH V++ L V
Sbjct: 270 ------LDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVI 323
Query: 301 IALISIQG--------------LGTGSFV-WNSLIDMYG--------------------- 324
+LIS+ G V W+S+I YG
Sbjct: 324 SSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLE 383
Query: 325 --------------RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG K +G ++F++M ++Y ++P +E Y CMVDLL R G ++
Sbjct: 384 ANDVTFLSLLYACSHCGL--KEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEA 441
Query: 371 LNFMKKMPFEP------SSAEPCN----PDIAEHAARHLFELEP--------LSS----- 407
++ MP + + C ++A + +F L+P LS+
Sbjct: 442 EALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASD 501
Query: 408 ------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
++H F GD SH +I+ L L SE+
Sbjct: 502 KRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEM 561
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
KK GY+ I + HSEKLA+AF L+ T G+P+RVIKNLR+C DCH
Sbjct: 562 KKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSDCH 621
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+S+ REII+ D+ RFHHF +G CSCGDYW
Sbjct: 622 VAIKYISEISN----REIIVRDSSRFHHFKNGRCSCGDYW 657
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 59/273 (21%)
Query: 144 GRMEMASGEFEEKDFSNLSLLKH-------------GKEIHPHHLKKDDLESDLLVNNSL 190
G ++ A F +S SL H GK++H + SD ++N L
Sbjct: 35 GHLKQAFDRFSSHIWSEPSLFSHLLQSCISENSLSLGKQLHSL-IITSGCSSDKFISNHL 93
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------------FR 231
++ Y+KC L A F + +K+++S N ++ GY G +
Sbjct: 94 LNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWN 153
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
+ G Q+ E L FSRM + P+ +L VL CA ++ G+++HGYV +
Sbjct: 154 AMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRK- 212
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351
G L+ V +SL MY +CG++ EG R M + +
Sbjct: 213 -----CGFEFNLV----------VVSSLAHMYMKCGSL--GEGERLIRAMPSQ-----NV 250
Query: 352 EQYCCMVDLLARAGQFDDTL---NFMKKMPFEP 381
+ ++ A+ G ++ L N MK F P
Sbjct: 251 VAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRP 283
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 141/500 (28%), Positives = 210/500 (42%), Gaps = 142/500 (28%)
Query: 162 SLLKHGKEIHPHHLK-KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
+LL G+ + H L K SD+ N+L+ YA C + A F I ++ VSWN
Sbjct: 100 NLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNI 159
Query: 221 MLAGYALGG-------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
M+ GY G + I+G + G AL M + +
Sbjct: 160 MIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELD 219
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS---------------- 305
++++ +L ACA + G+ +H YVL + + + +G AL++
Sbjct: 220 GVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFG 279
Query: 306 -IQGLGTGSFVWNSLIDMYG---------------RCGAIQKN----------------- 332
++G ++W ++ID + R I+ N
Sbjct: 280 KLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLV 339
Query: 333 -EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------E 385
EG F+ MK YN+ P++E Y CMVDLL R+G+ D+ +KKMP +PS+ +
Sbjct: 340 EEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLK 399
Query: 386 PC----NPDIAEHAARHLFELE-----------------------------------PLS 406
C + + HL E++ P+S
Sbjct: 400 ACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPIS 459
Query: 407 SGK--------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI-GYM-------------- 443
GK VH F+AG H + +I KL ++ +++ GY
Sbjct: 460 PGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEE 519
Query: 444 KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIM 503
K HSEKLA+AFGLI+T PG+ +RVIKNLR+C DCH+ K VS+ REIIM
Sbjct: 520 KETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKLVSQI----YSREIIM 575
Query: 504 IDNYRFHHFVDGACSCGDYW 523
D RFHHF DG+CSC DYW
Sbjct: 576 RDRVRFHHFRDGSCSCKDYW 595
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 127/300 (42%), Gaps = 41/300 (13%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ + + I + ++ V+ G+F MP +NV SWTS++ G
Sbjct: 145 LFDNIPERDAVSWNIMIDGYIKSGDVKTA--YGVFLDMPLKNVVSWTSLISGLVEAGQSV 202
Query: 88 EIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
E ++L Y + + G + AC+ L G+ ++ Y+++ + + + ++
Sbjct: 203 EALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALV 262
Query: 138 DMFIKCGRMEMASGEF-----EEKDFSNLSLLKHGKEIHPHHLKK----DDLESDLLVNN 188
+M++KCG ME A F +KD + + G IH ++ + + + + N
Sbjct: 263 NMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPN 322
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGE 244
S+ F A R C + + ++ + +M Y + E + + G +
Sbjct: 323 SIT-FTAVLR-----ACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLD 376
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR-------HHIQLST 297
A E +M M+P+ + +L AC + F LG ++ +++ +IQL+T
Sbjct: 377 EAKELIKKM---PMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLAT 433
>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 970
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 203/481 (42%), Gaps = 133/481 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L L+ GKE+H + ++ LE DL V S++ Y C L F ++ K LVSW
Sbjct: 507 SKLKSLRLGKEVHGF-IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 565
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N ++ GY GF + AL F +M+ +Q IS+ V AC+ +
Sbjct: 566 NTVITGYLQNGFPDR------------ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 613
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
+LG+E H Y L+H ++ + +LI + GL S WN++I Y
Sbjct: 614 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 673
Query: 324 GRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPA 350
G G ++ +EG RY + MK + ++P
Sbjct: 674 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 733
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHL 399
++ Y C++D+L RAGQ D L + + E + C N ++ E A L
Sbjct: 734 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 793
Query: 400 FELEP-----------LSSG--------------------------------KVHSFIAG 416
FELEP L +G KV SF+ G
Sbjct: 794 FELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVG 853
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLI 462
+ +I L +I K+GY + GHSEKLAL +GLI
Sbjct: 854 ERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 913
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
TS G+ +RV KNLR+C DCH+ K +SK EREI++ DN RFHHF +G CSCGDY
Sbjct: 914 KTSEGTTIRVYKNLRICVDCHNAAKLISKV----MEREIVVRDNKRFHHFKNGVCSCGDY 969
Query: 523 W 523
W
Sbjct: 970 W 970
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 173/387 (44%), Gaps = 98/387 (25%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V++ ++ + DL PD TY + + C ++++ +G+ VH ++ G+ F+G
Sbjct: 170 VLETFIEMISTTDLL-PDH--FTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN 226
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100
+F+ MPERN+ SW SM+ +++ G+ EE L +++E
Sbjct: 227 ALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 286
Query: 101 -----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----- 144
V C+ ++ +GK V+ + + ++ + + ++DM+ KCG
Sbjct: 287 AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA 346
Query: 145 -----------------------------------RMEMASGEFEEKDFSNL-------- 161
R +A GE + D +
Sbjct: 347 QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCF 406
Query: 162 --SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
S L KE+H + LK++ + ++L V N+ + YAKC L A F I+ K + SWN
Sbjct: 407 HESFLPSLKELHCYSLKQEFVYNEL-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 465
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
A++ G+A Q D +L+ +M + + P++ ++ +L+AC+++K +
Sbjct: 466 ALIGGHA------------QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLR 513
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISI 306
LGKE+HG+++R+ ++ V ++++S+
Sbjct: 514 LGKEVHGFIIRNWLERDLFVYLSVLSL 540
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 146/374 (39%), Gaps = 99/374 (26%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHL----------IVCG--VELCAFLG-------MFEKMP 66
L+ Q K ++E+G ++H + ++C + + A G +F+ +
Sbjct: 88 GLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALR 147
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+N+F W +++ Y+ Y+E++ F +I L DH + Y IK
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMI-----STTDLLPDH------FTYPCVIK- 195
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
AC G ++ G L HG + K L D+ V
Sbjct: 196 ---ACA-----------GMSDVGIG-----------LAVHGLVV------KTGLVEDVFV 224
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE---ITGFTQYGDG 243
N+L+ FY ++ A F + +++LVSWN+M+ ++ GF EE + G +G
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ A P+ +L VL CA+ + LGK +HG+ ++ + +
Sbjct: 285 DGAF-----------MPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLN--- 330
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
N+L+DMY +CG I + M + N + + MV +
Sbjct: 331 -------------NALMDMYSKCGCITNAQ-------MIFKMNNNKNVVSWNTMVGGFSA 370
Query: 364 AGQFDDTLNFMKKM 377
G T + +++M
Sbjct: 371 EGDTHGTFDVLRQM 384
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PD TV L C KL +L LG +VH +I CG ELC
Sbjct: 494 PDSFTVCSLL--SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG-ELCTV 550
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F+ M ++++ SW +++ Y G+ + + +F ++ G V+ ACS L
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 610
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLK 165
R+G++ + Y + E +A + ++DM+ K G + +S F +EK ++ + +
Sbjct: 611 PSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670
Query: 166 HGKEIH 171
G IH
Sbjct: 671 MGYGIH 676
>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
Length = 713
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 177/696 (25%), Positives = 276/696 (39%), Gaps = 217/696 (31%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + +C L+ + ++HA + ++ FLG F ++
Sbjct: 38 YASLLWQCRGLDEVR---KLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT 94
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHRVGKD 116
N SW +M Y G+ LF+ + +GV AC+ ++ +G+
Sbjct: 95 LHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRK 154
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF--------------- 158
+ + + S E ++ V+ ++ M+ +C +E A F+ EKD
Sbjct: 155 LNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWR 214
Query: 159 ---------------------SNLSLL---------KHGKEIHPHHLKKDDLESDLLVNN 188
+ +SLL ++G H S +V
Sbjct: 215 TSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAG 274
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L++ Y KC + A + + VSW AM+A YA Q G+ A+
Sbjct: 275 TLVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYA------------QNGNAAEAIN 322
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI--ALISI 306
F M +P+ I+L V+ +CA + LGK IH + R S + + A+I++
Sbjct: 323 LFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARI-RSSPSFSQSLMLLNAVITM 381
Query: 307 QG----------------LGTGSFV-WNSLIDMYGRCG----AI---------------- 329
G L T S V W ++I Y + G AI
Sbjct: 382 YGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNR 441
Query: 330 --------------QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM- 374
Q + W +F M ++ + PA + YCC+VDLL RAG+ + +
Sbjct: 442 VTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLL 501
Query: 375 KKMPFEPS--------SAEPCNPDI--AEHAARHLFELEP-------------------- 404
+ FE SA N D+ ++ AA+ + ELEP
Sbjct: 502 RHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRA 561
Query: 405 ---------LSSG--------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
SSG +VH F+ D SH +I +L RL+ EIK+ G
Sbjct: 562 DVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAG 621
Query: 442 YM-------------KRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K++ G HSE+LA+A G+IST PG+ LRV+KNLR+C DCH+ TK
Sbjct: 622 YVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATK 681
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++S+ R+II+ D RFHHF DG CSCGDYW
Sbjct: 682 FISQIVG----RQIIVRDTSRFHHFKDGVCSCGDYW 713
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL---------------IVCGV 53
L Q MDL + +T + C L L LG ++HA + ++
Sbjct: 323 LFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMY 382
Query: 54 ELCAFLGM----FEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDEGV 101
C L + FE +P R+V +WT+M+ Y G EE + LF +LID G
Sbjct: 383 GKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGT 437
>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
Length = 637
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 167/649 (25%), Positives = 260/649 (40%), Gaps = 196/649 (30%)
Query: 8 LLLQSMDLTNPDE---------CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF 58
+LLQ + NP E CT + R +L L GI+ + + V +
Sbjct: 52 MLLQGI---NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGK 108
Query: 59 LG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
LG +F +M R+V +W++M+ Y G+ E + LF
Sbjct: 109 LGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFR----------------- 151
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ +G A K ++ C ++L L+ G +H
Sbjct: 152 -----------QMDLDGVAPNKVTLVSGLDAC---------------ASLGDLRSGALMH 185
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
++ ++S ++V +L++ Y KC ++ A F +I +K++V+W+A+ A YA
Sbjct: 186 -QRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA----- 239
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH--GYVL 289
+ A+ RM + PN+ + VL ACA + K G+ IH VL
Sbjct: 240 -------RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVL 292
Query: 290 RHHIQLSTGVGIALISIQ------GLGTGSF---------VWNSLIDMYGRCGAIQK--- 331
++ V AL+++ L F +WNSLI + G +K
Sbjct: 293 GGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALE 352
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
++G ++F ++ + P E + CMVDLL
Sbjct: 353 LFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLL 412
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG--- 408
RAG D+ + + MPFEP C N D A AA +LF+L+P
Sbjct: 413 GRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYV 472
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+VH FI+GD H + +I
Sbjct: 473 LLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHA 532
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L RL +K+ GY+ K I HSEKLA+AF L++T GSP+RV+K
Sbjct: 533 ELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVK 592
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ +K++SK REI++ D RFH F +GACSCGDYW
Sbjct: 593 NLRVCNDCHTASKFISKLVN----REIVVRDCNRFHRFQNGACSCGDYW 637
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 47/308 (15%)
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
++ Y++ + F ++ +VSWNA++A Y G R D + F
Sbjct: 1 MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYI--GNR----------DFDRCWLF 48
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
F M+ + P + +S L+AC + +G+ I +L G GI SI
Sbjct: 49 FRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAIL--------GTGIEEESI--- 97
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
V +L+ MYG+ G + + M ++ + + MV AR G +
Sbjct: 98 -----VQTALVSMYGKLGHC-TDAASVFLRMSHRD------VVAWSAMVAAYARNGHPRE 145
Query: 370 TLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEK 429
L ++M + + A L +L S +H + S V +
Sbjct: 146 ALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR--SGALMHQRVEAQGIQSGV-VVGTA 202
Query: 430 LMRLYSEIKKIGYMKRIPACGH-SEKLALAFGLISTSPG------SPLRVIKNLRMCGDC 482
L+ LY + +I + A G EK +A+ IS + +RV+ + + G
Sbjct: 203 LVNLYGKCGRI--EAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLV 260
Query: 483 HSPTKYVS 490
+ T +VS
Sbjct: 261 PNSTTFVS 268
>gi|255560477|ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539521|gb|EEF41109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 484
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 138/476 (28%), Positives = 207/476 (43%), Gaps = 134/476 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L +GK IH + ++K L L++ +L+D Y KC L++A FS+I +K+LVSWN M+A
Sbjct: 27 LSNGKCIHGYAIRKMFL-PHLVLETALVDMYGKCGELELAKRVFSQIDEKNLVSWNTMIA 85
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
Y G E ALE F+ + +P+ ++++ +L A A++ K+
Sbjct: 86 AYVQNGLNME------------ALELFNCLWNEPPKPDAVTIASILPAYAELASVSECKQ 133
Query: 284 IHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYG---- 324
IH Y+++ + T + A++ + L WN++I YG
Sbjct: 134 IHSYIIKIELSSHTIISNAIVYMYAKCGDLKTARRIFDGMLCKNVVSWNTMIMAYGIHGF 193
Query: 325 -----------RCGAIQKNE------------------GWRYFEMMKKEYNMEPAMEQYC 355
R I+ NE GW +F MK +YN++ +E +
Sbjct: 194 GTMSIQLFSEMRENGIKPNESTFVSLLSSCSITGLVDEGWEFFNSMKSDYNIDHGIEHFG 253
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELE-- 403
CMVDLL R G D + F++++P P+ S N +AE AA+H+F LE
Sbjct: 254 CMVDLLGRTGNLDAAMQFIEELPLVPTARIWGSLLTASRNKNNIALAELAAKHIFSLEHD 313
Query: 404 -----------------------------------------PLSSGKVHSFIAGDTSHSL 422
++GK H FI D SHS
Sbjct: 314 NTGCYVLLSNMYAEAGRWEDVEQIKTLMKKKGIVKTVSCCMVETNGKSHKFINQDKSHSQ 373
Query: 423 VHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSPG 467
++ I + L + +I K Y+ K PA HS KLA+ FGLIST+ G
Sbjct: 374 INMIYDVLDIIMKKIGKDAYVHSVSKFRLVDLMNKRKNSPA-NHSVKLAICFGLISTAIG 432
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+ + K R+C DCH K +S K REII+ D+ FHHF G+CSC DYW
Sbjct: 433 KPVVIRKTTRICEDCHMVAKKISLVTK----REIIIGDSKIFHHFNGGSCSCRDYW 484
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 44/199 (22%)
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH----HIQLSTGVGIALISIQGLGTG 312
++ P+ I++ +L +C+Q GK IHGY +R H+ L T
Sbjct: 6 NLIPDVITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLET--------------- 50
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+L+DMYG+CG ++ + R F + E + + M+ A + LN
Sbjct: 51 -----ALVDMYGKCGELELAK--RVFSQID-----EKNLVSWNTMI-----AAYVQNGLN 93
Query: 373 FMKKMPFEPSSAEPCNPDIAEHAA--RHLFELEPLSSGK-VHSFIAGD--TSHSLVHKIS 427
F EP PD A+ EL +S K +HS+I +SH++ IS
Sbjct: 94 MEALELFNCLWNEPPKPDAVTIASILPAYAELASVSECKQIHSYIIKIELSSHTI---IS 150
Query: 428 EKLMRLYSEIKKIGYMKRI 446
++ +Y++ + +RI
Sbjct: 151 NAIVYMYAKCGDLKTARRI 169
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 149/589 (25%), Positives = 251/589 (42%), Gaps = 167/589 (28%)
Query: 53 VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGV----Y 102
VE C +F++M E+++ +W++++ + YEE + F +++DE V
Sbjct: 327 VEACK---LFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
AC+ L +GK ++ + I E ++ ++ M+ KCG + +A F+E
Sbjct: 384 SACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEA-----Y 438
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL DL+ NS++ Y KC + A F + +K +VSW++M+
Sbjct: 439 LL------------------DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMI 480
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GYA +E L F M + +P+ +L V++ACA++ + GK
Sbjct: 481 SGYAQNDLFDE------------TLALFQEMQMSGFKPDETTLVSVISACARLAALEQGK 528
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLI------- 320
+H Y+ R+ + ++ +G LI + + G WN+LI
Sbjct: 529 WVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNG 588
Query: 321 ------DMY----------------GRCGAIQK----NEGWRYFEMMKKEYNMEPAMEQY 354
DM+ G GA + +EG +F M ++ ++P ++ Y
Sbjct: 589 LVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHY 648
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEP 404
CMVDLL RAG+ + + +MP P A C + ++ R L EL+P
Sbjct: 649 GCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQP 708
Query: 405 -------------------------------------------LSSGKVHSFIAGDTSHS 421
++G +H F+AGD +H
Sbjct: 709 DHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHP 768
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
+ I + L+ + ++K GY I HSEKLA+AFGLI+ SP
Sbjct: 769 DMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP 828
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+P+R++KNLR+C DCH+ K +SKA R+I++ D +RFHHF G
Sbjct: 829 TPIRIMKNLRICNDCHTAAKLISKA----FCRKIVVRDRHRFHHFEQGG 873
>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
lyrata]
Length = 1305
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 167/713 (23%), Positives = 281/713 (39%), Gaps = 218/713 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL----- 59
L + M + T + Q C G Q+H +++ G V +C L
Sbjct: 613 LFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYS 672
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F M +RN+ SW S++ Y LGY ++ + L E++
Sbjct: 673 RNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLL------------DEMET 720
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------SL 163
+ D+ + + + + R D R+++A + S+L L
Sbjct: 721 CGLKPDIVTWNSLLSGYASKALSR---DAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGL 777
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+K GK IH + ++ + L D+ V +L+D Y K YL A F + +K++V+WN++++
Sbjct: 778 VKLGKAIHGYVIR-NQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLIS 836
Query: 224 GYALGGFREE-----------------------ITGFTQYGDGETALEFFSRMIQTDMQP 260
G + G +E ++G+ +G E AL +M + ++P
Sbjct: 837 GLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEP 896
Query: 261 NTISLSGVLAACAQV----KGFKL-------------------------------GKEIH 285
N +S + +L+ C++ G K+ GKE+H
Sbjct: 897 NVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVH 956
Query: 286 GYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYG--RCG- 327
+ L++++ V AL+ + L + + + WN +I Y R G
Sbjct: 957 SFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGE 1016
Query: 328 -------------------------AIQKN-----EGWRYFEMMKKEYNMEPAMEQYCCM 357
++ KN EGW+YF++M+ Y + P +E CM
Sbjct: 1017 EGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCM 1076
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS 407
V+LL R+G D+ +F++ MP +P + C + ++AE A + L LEP +S
Sbjct: 1077 VELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNS 1136
Query: 408 GK-------------------------------------------VHSFIAGDTSHSLVH 424
VH F A +H
Sbjct: 1137 ANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEG 1196
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I +L +L SE+KK GYM K GH+EKLA+ +GLI +P+
Sbjct: 1197 EIYFELYKLVSEMKKSGYMPDTRCIHQNVSESEKEKLLMGHTEKLAMTYGLIKKKGIAPI 1256
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KN +C DCH+ KY+S R REI++ + R HHF DG CSC + W
Sbjct: 1257 RVVKNTNLCSDCHTVAKYISVL----RNREIVLQEGARVHHFRDGKCSCNNSW 1305
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/482 (22%), Positives = 183/482 (37%), Gaps = 127/482 (26%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------LCAFLG------ 60
N DE V A++F+ C L LG +H LI G++ L F G
Sbjct: 520 VNFDE--VVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLD 577
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACS 106
+F++MP+R+ +W ++ + G +E+ V LF ++ G + + CS
Sbjct: 578 LANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCS 637
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+ G+ ++ Y++ + FE N + ++ M+ + G++E + F NLS
Sbjct: 638 NKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSW-- 695
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAML 222
NS++ Y + Y+ A +++ + +V+WN++L
Sbjct: 696 ---------------------NSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLL 734
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GYA + A+ R+ ++PNT S+S +L A + KLGK
Sbjct: 735 SGYASKALSRD------------AIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGK 782
Query: 283 EIHGYVLRHHIQLSTGVGIALISI------------------------------------ 306
IHGYV+R+ + V LI +
Sbjct: 783 AIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTG 842
Query: 307 --------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
+G+ + + WNSL+ Y G +K MKK +EP +
Sbjct: 843 LLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEK--ALAVVGKMKKN-GVEPNVV 899
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VH 411
+ ++ ++ G F + L KM E S N R L L L SGK VH
Sbjct: 900 SWTAILSGCSKNGNFGNGLKIFLKMQEEGVSP---NSATISSLLRILGCLSLLYSGKEVH 956
Query: 412 SF 413
SF
Sbjct: 957 SF 958
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 171/659 (25%), Positives = 269/659 (40%), Gaps = 201/659 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ +P+ + + ++++ G E + ++ L + G+ KAC+ D
Sbjct: 120 LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 179
Query: 111 HRVGKDVYDY-----MISIKFEGNA---------CVK--RPVLD---------------M 139
K+V+D ++S F GNA CV+ R V D
Sbjct: 180 ALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 239
Query: 140 FIKCGRMEMASGEFEEKDFSN-----------------LSLLKHGKEIHPHHLKKDDLES 182
++KCG F E +S L LK GKEIH ++ +
Sbjct: 240 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG-MVV 298
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY----------------A 226
+L V ++L+ YAKC ++ A F + + +VSWN +L Y +
Sbjct: 299 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMS 358
Query: 227 LGGFREE-------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
G R + I G + G E A+E F +M + +PN I++S +L AC+ + +
Sbjct: 359 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR 418
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLI---D 321
+GKEIH YV RH AL+ + L F WN++I
Sbjct: 419 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANA 478
Query: 322 MYGR------------CGAIQKN------------------EGWRYFEMMKKEYNMEPAM 351
M+G +Q N EG + F M +++ +EP
Sbjct: 479 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDA 538
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFE 401
Y C+VD+ +RAG+ ++ F++ MP EP+++ C N ++A+ +A+ LFE
Sbjct: 539 NHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 598
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
+EP + G KVH+F+ GD
Sbjct: 599 IEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDK 658
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
S+ KI L L ++K GY K C HSEKLA+AFG+++
Sbjct: 659 SNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNL 718
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ S +RV KNLR+CGDCH+ KY+SK I++ D+ RFHHF +G CSC D W
Sbjct: 719 NGQSTIRVFKNLRICGDCHNAIKYMSKVVG----VIIVVRDSLRFHHFKNGNCSCKDLW 773
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 164/650 (25%), Positives = 255/650 (39%), Gaps = 194/650 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + + C KL + G Q+H H++ G EL ++ +F+
Sbjct: 105 TFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGS 164
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R+V S+T+++ Y GY E +F D KDV + I
Sbjct: 165 SHRDVVSYTALITGYASRGYIESAQKMF----------------DEIPVKDVVSWNAIIS 208
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL---------LKHGKEIHPHHLK 176
+ + LD+F EM + + + +++ ++ G+++H +
Sbjct: 209 GYADTGNNKEALDLF-----KEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSW-ID 262
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
L S+L + N+L+D Y+KC ++ A F + K ++SWN M+ GY +E
Sbjct: 263 DHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKE--- 319
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQ 294
AL F M+++ PN +++ +L ACAQ+ G+ IH Y+ + +
Sbjct: 320 ---------ALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVT 370
Query: 295 LSTGVGIALISIQG----LGTGSFVWNSL--------------IDMYGRCGA-------I 329
++ + +LI + + V+NS+ M+GR A +
Sbjct: 371 NASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRM 430
Query: 330 QKNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
+KN G R F M + Y + P +E Y CM+DLL G
Sbjct: 431 RKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGL 490
Query: 367 FDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK------- 409
F + + M EP C N ++ E A+ L ++EP + G
Sbjct: 491 FKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNI 550
Query: 410 ------------------------------------VHSFIAGDTSH------------- 420
VH FI GD H
Sbjct: 551 YATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 610
Query: 421 -------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVI 473
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+ L ++
Sbjct: 611 EVLLEEAGFVPDTSEVLQEMEEEFKQ-GALRH-----HSEKLAIAFGLISTKPGTKLTIV 664
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 710
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 85/334 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV-----------ELCAF----------LGMFEKMP 66
+ C L +L + +HA +I G+ E C + +FE +
Sbjct: 8 LLHNCKTLQSLRI---IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQ 64
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKD 116
E N+ W +M + + + L+ +I G+ K+C++LK + G+
Sbjct: 65 EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ +++ + +E + V ++ M++K GR + A F+
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSS------------------- 165
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
D++ +L+ YA Y++ A F +I K +VSWNA+++GYA
Sbjct: 166 ----HRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYA---------- 211
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
G+ + AL+ F M++T+++P+ ++ V++ACAQ +LG+++H ++ H
Sbjct: 212 --DTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDH----- 264
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GLG+ + N+LID+Y +CG ++
Sbjct: 265 -----------GLGSNLKIVNALIDLYSKCGEVE 287
>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
Length = 706
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 167/692 (24%), Positives = 268/692 (38%), Gaps = 221/692 (31%)
Query: 28 IFQRCPKLNNLELGIQVHA---------------HLIV----CGVELCAFLGMFEKMPER 68
+ Q C +L L G ++H HL++ CG A L +FE P +
Sbjct: 40 VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARL-VFEATPAK 98
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDH-RVGKDV 117
NVFSWT ++ + G +E + LFY ++ +G+ ACS + G+ +
Sbjct: 99 NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---------------------- 155
+ + F+ ++ M+ KCG +E + FE
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRG 218
Query: 156 --------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189
+ S LK + IH L+ D V N
Sbjct: 219 LEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTG---FDQDVVNV 275
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
+++ Y KC L+ A F + Q +++WN M+A Y +Q+G AL F
Sbjct: 276 ILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAY------------SQHGHTSEALRF 323
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG- 308
+ M + + P+ + V+ ACA + ++GK++H + Q+ T + +L+++ G
Sbjct: 324 YELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQV-TELANSLVNMYGK 382
Query: 309 -------------LGTGSFVWNSLIDMYGRCGAIQK------------------------ 331
GS WN++I Y + Q+
Sbjct: 383 CGILDVARSIFDKTAKGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVL 442
Query: 332 ---------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP---- 378
E YF M++++ + P Y CMV+ L +AG+ D ++ MP
Sbjct: 443 SACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPD 502
Query: 379 ---------------------FEPSSAEPCNPD--------------------------- 390
F A +P+
Sbjct: 503 VLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKL 562
Query: 391 -----IAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--- 442
I ++A R + +L V+ F AGD S+ +I ++L RL E+K+ GY
Sbjct: 563 MLDRGIRKNAGRSIIKL----GTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPD 618
Query: 443 -----------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSE+LA+AFG+ISTS G+PLR++KNLR+CGDCH+ TK SK
Sbjct: 619 MTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSK 678
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ REII+ D+ RFHHF +G+CSC D+W
Sbjct: 679 ITR----REIIVRDSNRFHHFKNGSCSCKDFW 706
>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
Length = 720
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 203/481 (42%), Gaps = 133/481 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L L+ GKE+H + ++ LE DL V S++ Y C L F ++ K LVSW
Sbjct: 257 SKLKSLRLGKEVHGF-IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 315
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N ++ GY GF + AL F +M+ +Q IS+ V AC+ +
Sbjct: 316 NTVITGYLQNGFPDR------------ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 363
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
+LG+E H Y L+H ++ + +LI + GL S WN++I Y
Sbjct: 364 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 423
Query: 324 GRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPA 350
G G ++ +EG RY + MK + ++P
Sbjct: 424 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 483
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHL 399
++ Y C++D+L RAGQ D L + + E + C N ++ E A L
Sbjct: 484 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 543
Query: 400 FELEP-----------LSSG--------------------------------KVHSFIAG 416
FELEP L +G KV SF+ G
Sbjct: 544 FELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVG 603
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLI 462
+ +I L +I K+GY + GHSEKLAL +GLI
Sbjct: 604 ERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 663
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
TS G+ +RV KNLR+C DCH+ K +SK EREI++ DN RFHHF +G CSCGDY
Sbjct: 664 KTSEGTTIRVYKNLRICVDCHNAAKLISKV----MEREIVVRDNKRFHHFKNGVCSCGDY 719
Query: 523 W 523
W
Sbjct: 720 W 720
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 135/303 (44%), Gaps = 77/303 (25%)
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------------VYKACSELKDHRV 113
RN SW SM+ +++ G+ EE L +++E V C+ ++ +
Sbjct: 1 RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------------------------- 144
GK V+ + + ++ + + ++DM+ KCG
Sbjct: 61 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120
Query: 145 -----------RMEMASGEFEEKDFSNL----------SLLKHGKEIHPHHLKKDDLESD 183
R +A GE + D + S L KE+H + LK++ + ++
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L V N+ + YAKC L A F I+ K + SWNA++ G+A Q D
Sbjct: 181 L-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHA------------QSNDP 227
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+L+ +M + + P++ ++ +L+AC+++K +LGKE+HG+++R+ ++ V +++
Sbjct: 228 RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSV 287
Query: 304 ISI 306
+S+
Sbjct: 288 LSL 290
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PD TV L C KL +L LG +VH +I CG ELC
Sbjct: 244 PDSFTVCSLL--SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG-ELCTV 300
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F+ M ++++ SW +++ Y G+ + + +F ++ G V+ ACS L
Sbjct: 301 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 360
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLK 165
R+G++ + Y + E +A + ++DM+ K G + +S F +EK ++ + +
Sbjct: 361 PSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 420
Query: 166 HGKEIH 171
G IH
Sbjct: 421 MGYGIH 426
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 70/165 (42%), Gaps = 31/165 (18%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H +K L+ +L++NN+LMD Y+KC + A F K++VSWN M
Sbjct: 61 GKGVHGWAVKLR-LDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTM----- 114
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+ GF+ GD + +M+ D++ + +++ + C KE+
Sbjct: 115 -------VGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 167
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
H Y L+ Q V N+ + Y +CG++
Sbjct: 168 HCYSLK----------------QEFVYNELVANAFVASYAKCGSL 196
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 213 KHLVSWNAMLAGYALGGFREE---ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
++ VSWN+M+ ++ GF EE + G +G+ A P+ +L VL
Sbjct: 1 RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF-----------MPDVATLVTVL 49
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
CA+ + LGK +HG+ ++ + + N+L+DMY +CG I
Sbjct: 50 PVCAREREIGLGKGVHGWAVKLRLDKELVLN----------------NALMDMYSKCGCI 93
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ M + N + + MV + G T + +++M
Sbjct: 94 TNAQ-------MIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 134
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 145/487 (29%), Positives = 210/487 (43%), Gaps = 139/487 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L+ G+ IH H + D V +L+ FYAK ++ +A F K+ +K +
Sbjct: 126 KSSADLTAFSIGETIHCH-VYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTV 184
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN+M++GY GF G+ A+E F M ++P++ + +L+ACAQV
Sbjct: 185 VAWNSMISGYEQNGF------------GKEAVELFFLMQDLGVKPDSSTFVSLLSACAQV 232
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-LGTGS--------------FVWNSLI 320
LG +H Y+ R+ L+ +G AL+++ G S W ++I
Sbjct: 233 GAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMI 292
Query: 321 DMYGRCG----AIQ-----------------------------KNEGWRYFEMMKKEYNM 347
YG G AI+ +EG + F MK+EY +
Sbjct: 293 SGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGL 352
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA------EPC----NPDIAEHAA 396
P++E CMVD+L RAG ++ F+K P EP+ A C N D+ A
Sbjct: 353 VPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVA 412
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL +EP + G KV+ F
Sbjct: 413 EHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLF 472
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLA 456
GD SH ++I L L S ++ GY IPA HSEKLA
Sbjct: 473 SMGDKSHPKTNQIYLYLDELMSRCREAGY---IPASESVMHEVEEEEREYALRYHSEKLA 529
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ T G +R++KNLRMC DCH+ KY+S REI + D RFHHF DG+
Sbjct: 530 IAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYISIIAN----REINVRDRLRFHHFKDGS 585
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 586 CSCQDYW 592
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 170/641 (26%), Positives = 260/641 (40%), Gaps = 180/641 (28%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
++ + Q C KL +L G QVH+ +I G F+ +F MP
Sbjct: 65 FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMP 124
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS--I 124
RNV S+ ++ Y LG E LF E+ + + ++ MI+
Sbjct: 125 RRNVMSFNILINGYLQLGDLESAQKLF------------DEMSERNIA--TWNAMIAGLT 170
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDL 180
+FE N + L +F + + EF + + L L G+E+H L K
Sbjct: 171 QFEFN----KQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHAC-LLKCGF 225
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E +V +SL Y K L + + +V+WN ++AG A G EE+
Sbjct: 226 ELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV------ 279
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L ++ M +P+ I+ VL+AC+++ G++IH V++ V
Sbjct: 280 ------LNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVV 333
Query: 301 IALISIQGLG------TGSFV---------WNSLIDMYGRCG----AIQ----------- 330
+LIS+ +FV W+S+I YG G A++
Sbjct: 334 SSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKME 393
Query: 331 ------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
K +G YF++M K+Y ++P +E Y C+VDLL RAG+ ++
Sbjct: 394 ANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEG 453
Query: 373 FMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSGK------------- 409
++ MP +P C ++AE + + +L+PL +
Sbjct: 454 MIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARN 513
Query: 410 ------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
VH F GD SH +I L L SE+K+
Sbjct: 514 WLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQ 573
Query: 440 IGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
GY +P G HSEK A+AF L++TS P+RV+KNLR+C DC
Sbjct: 574 HGY---VPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDC 630
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ K +S R R REII+ D RFHHF DG CSCG+YW
Sbjct: 631 HNAIKCIS----RIRNREIIVRDASRFHHFKDGECSCGNYW 667
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 144 GRMEMASGEFEEKDFSNLSLLKH-------------GKEIHPHHLKKDDLESDLLVNNSL 190
GR++ A F + +S+ SL H GK++H + D ++N L
Sbjct: 45 GRIKQAYDTFTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGG-SKDKFISNHL 103
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----------------- 233
++FY+K K + FS + +++++S+N ++ GY G E
Sbjct: 104 LNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWN 163
Query: 234 --ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
I G TQ+ + AL F M P+ +L VL CA ++ G+E+H +L+
Sbjct: 164 AMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKC 223
Query: 292 HIQLSTGVGIAL 303
+LS+ VG +L
Sbjct: 224 GFELSSVVGSSL 235
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 171/659 (25%), Positives = 269/659 (40%), Gaps = 201/659 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ +P+ + + ++++ G E + ++ L + G+ KAC+ D
Sbjct: 34 LFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGD 93
Query: 111 HRVGKDVYDY-----MISIKFEGNA---------CVK--RPVLD---------------M 139
K+V+D ++S F GNA CV+ R V D
Sbjct: 94 ALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSC 153
Query: 140 FIKCGRMEMASGEFEEKDFSN-----------------LSLLKHGKEIHPHHLKKDDLES 182
++KCG F E +S L LK GKEIH ++ +
Sbjct: 154 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHG-MVV 212
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY----------------A 226
+L V ++L+ YAKC ++ A F + + +VSWN +L Y +
Sbjct: 213 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMS 272
Query: 227 LGGFREE-------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
G R + I G + G E A+E F +M + +PN I++S +L AC+ + +
Sbjct: 273 RDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR 332
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSLI---D 321
+GKEIH YV RH AL+ + L F WN++I
Sbjct: 333 MGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANA 392
Query: 322 MYGR------------CGAIQKN------------------EGWRYFEMMKKEYNMEPAM 351
M+G +Q N EG + F M +++ +EP
Sbjct: 393 MHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDA 452
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFE 401
Y C+VD+ +RAG+ ++ F++ MP EP+++ C N ++A+ +A+ LFE
Sbjct: 453 NHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE 512
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
+EP + G KVH+F+ GD
Sbjct: 513 IEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDK 572
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIST 464
S+ KI L L ++K GY K C HSEKLA+AFG+++
Sbjct: 573 SNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNL 632
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ S +RV KNLR+CGDCH+ KY+SK I++ D+ RFHHF +G CSC D W
Sbjct: 633 NGQSTIRVFKNLRICGDCHNAIKYMSKVVG----VIIVVRDSLRFHHFKNGNCSCKDLW 687
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 140/480 (29%), Positives = 201/480 (41%), Gaps = 131/480 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ ++ L+ G+ + +++ + + V + +D Y KC ++ A F ++K + V+W
Sbjct: 52 ARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAW 111
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
AM+ GYA G E AL+ F M +P+ ++ G L+AC ++
Sbjct: 112 GAMVGGYASNGHPRE------------ALDLFFAMQMEGAKPDCYTVVGALSACTRLGAL 159
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI--- 320
LG++ G V + + +G ALI + Q L VWN++I
Sbjct: 160 DLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGL 219
Query: 321 DMYGR-------CGAIQK-----------------------NEGWRYFEMMKKEYNMEPA 350
M G G ++K N+G +YF M Y + P
Sbjct: 220 GMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPR 279
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLF 400
+E Y CMVDL +RAG ++ + MP ++ C N D+AEHA + L
Sbjct: 280 IEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLI 339
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
LEP +SG KVH F GD
Sbjct: 340 RLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGD 399
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLIS 463
SH L KI KL L E+K +GY K HSEK+A+AF LI+
Sbjct: 400 DSHPLSDKIYAKLDELGMEMKAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLIT 459
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T PG +RV KNLR+C DCHS K +S R REI++ DN RFH F DG CSC DYW
Sbjct: 460 TEPGETIRVTKNLRVCTDCHSAIKLIS----RITCREIVVRDNNRFHCFRDGHCSCNDYW 515
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 135/469 (28%), Positives = 201/469 (42%), Gaps = 138/469 (29%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
H+ K L+++ V+ +L Y + + A F + +K + SWNAM++GYA
Sbjct: 347 HVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYA------- 399
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
Q G E A+ F +M +++PN +++S L+ACAQ+ LGK +H + +
Sbjct: 400 -----QNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKL 454
Query: 294 QLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK------ 331
+L+ V ALI + + GS WN +I YG G +
Sbjct: 455 ELNVYVMTALIDMY-VKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYK 513
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
EG F M +Y + P +E CMVDLL RA
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRA 573
Query: 365 GQFDDTLNFMKKMPFEPSSAEP---------C----NPDIAEHAARHLFELEPLSSG--- 408
GQ + + + P S+ P C + D+A+ A++ LFELEP ++G
Sbjct: 574 GQLKEAFELISEFP--KSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYV 631
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+ H F+AGD +H I
Sbjct: 632 LLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYL 691
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
L +L +++ + GY A HSEKLA+AFGL++T PG+ +R+IK
Sbjct: 692 YLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIK 751
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ TK +SK +R I++ D RFHHF DG CSCGDYW
Sbjct: 752 NLRVCLDCHNATKIISKVT----QRLIVVRDASRFHHFRDGVCSCGDYW 796
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 58/294 (19%)
Query: 44 VHAHLIVCGVEL------------CAFLGM------FEKMPERNVFSWTSMMGMYNVLGY 85
+HAH++ G++ C F M F+ MPE+ + SW +M+ Y G
Sbjct: 344 LHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGL 403
Query: 86 YEEIVNLFYL----------LIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
E V LF L AC++L +GK V+ + + K E N V
Sbjct: 404 TEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTA 463
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLK--------HGKEIHPHHLKKDDLESDLLVN 187
++DM++KCG + A F+ D N+ HG+ L KD +++ L
Sbjct: 464 LIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPT 523
Query: 188 NSLMDFYAKCRYLKVAH-CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT----QYGD 242
+S +L V + C + ++ + +M + Y + E T + G
Sbjct: 524 SS--------TFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQ 575
Query: 243 GETALEFFSRMIQTDMQPNT---------ISLSGVLAACAQVKGFKLGKEIHGY 287
+ A E S ++ + P + G LA A K F+L E GY
Sbjct: 576 LKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGY 629
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 99/233 (42%), Gaps = 39/233 (16%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V L+ YAKC ++ A F +++ LV++NA+++GY++ G + G +
Sbjct: 258 VVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSING----MVG--------S 305
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
++E F ++ ++P++ +L ++ + L +H +V++
Sbjct: 306 SVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVK--------------- 350
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
GL + V +L +Y C + R F+ M E ME + M+ A+ G
Sbjct: 351 -AGLDANAPVSTALTTLY--CRFNDMDSARRAFDAMP-----EKTMESWNAMISGYAQNG 402
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK-VHSFIAGD 417
+ + ++M + + P NP A +L LS GK VH IA +
Sbjct: 403 LTEMAVALFQQM--QALNVRP-NPLTISSALSACAQLGALSLGKWVHKIIANE 452
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 103/270 (38%), Gaps = 53/270 (19%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D V ++L Y A F + V WN +LAG +
Sbjct: 156 ADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLS--------------- 200
Query: 242 DGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G ALE F RM ++P++ +L+ VL A A+V +G+ +H + +
Sbjct: 201 -GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEK---------- 249
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
GL V LI +Y +CG ++ F+ M+ P + Y ++
Sbjct: 250 ------CGLAQHEHVVTGLISLYAKCGDMECAR--HLFDRMEG-----PDLVTYNALISG 296
Query: 361 LARAGQFDDTLNFMKK---MPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFI--A 415
+ G ++ K+ M PSS+ +A F EPL +G +H+ + A
Sbjct: 297 YSINGMVGSSVELFKELVGMGLRPSSSTL----VALIPVHSPFGHEPL-AGCLHAHVVKA 351
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445
G +++ +S L LY + +R
Sbjct: 352 GLDANA---PVSTALTTLYCRFNDMDSARR 378
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 149/532 (28%), Positives = 217/532 (40%), Gaps = 161/532 (30%)
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVY 118
MPE+++ S T+M+ Y G +E LF L + + ++ G ++
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
M++ K N VL + CG+ L+ G+ +H + ++ +
Sbjct: 61 RQMLNAKVRPNEVT---VLAVLSACGQT---------------GALETGRWVHSY-IENN 101
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ ++ V SL+D Y+KC L+ A F +I K +V+WN+M+ GYA+ GF ++
Sbjct: 102 GIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQD----- 156
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
AL F M QP I+ GVL AC+
Sbjct: 157 -------ALRLFKEMCMIGYQPTDITFIGVLNACSHA----------------------- 186
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
L+S EGW++F MK EY +EP +E Y CMV
Sbjct: 187 ---GLVS---------------------------EGWKFFYSMKDEYGIEPKVEHYGCMV 216
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHL--------- 399
+LL RAG ++ +K M + C N + E A +L
Sbjct: 217 NLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSG 276
Query: 400 -----------------------------FELEPLSS-----GKVHSFIAGDTSHSLVHK 425
FE EP S KVH F+AGD H +
Sbjct: 277 TYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSRE 336
Query: 426 ISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLR 471
I E L + +K GY K HSEKLALAFGLI+T PG+ ++
Sbjct: 337 IYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIK 396
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+C DCH+ TK +SK R+++M D RFHHFV+G CSCGDYW
Sbjct: 397 IVKNLRVCADCHAVTKLISKITG----RKVVMRDRNRFHHFVNGLCSCGDYW 444
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 141/532 (26%), Positives = 219/532 (41%), Gaps = 181/532 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ +P+R+V SW +++ Y G E + ++ +++ +H K +
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIY------------NDMHNHEGLKPIQGT 374
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+S+ +S L L+ G +H +K L
Sbjct: 375 FVSVL------------------------------PAYSYLGGLQQGMRMHALSIKTG-L 403
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D+ V L+D YAKC L A F + ++ WNA++AG + +
Sbjct: 404 NLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGV------------H 451
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G AL FS+M Q +++P+ ++ +LAAC+
Sbjct: 452 GHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHA------------------------- 486
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+D +G +F++M+ Y + P + Y CMVD+
Sbjct: 487 -----------------GLVD-----------QGRSFFDLMQTVYGIVPIAKHYTCMVDM 518
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAGQ D+ F++ MP +P SA C N ++ + A+++LFEL+P + G
Sbjct: 519 LGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYY 578
Query: 409 --------KVHSFIAGDTSHSLVHK----------------------------------- 425
K+ + D SLV +
Sbjct: 579 VLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEE 638
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I L L +++K GY+ K HSE+LA+AFG+I+T PG+PL
Sbjct: 639 IQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTPLH 698
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ KNLR+CGDCHS TKY+SK EREII+ D RFHHF DG CSCGD+W
Sbjct: 699 IYKNLRVCGDCHSATKYISKIT----EREIIVRDANRFHHFKDGHCSCGDFW 746
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 110/275 (40%), Gaps = 75/275 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPER+V +W +M+ + V L ++ EGV
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGV------------------- 164
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
G+A VL M + G +A ++ +KHG L
Sbjct: 165 ------AGDAVTLSSVLPMCVVLGDRALAL-------VMHVYAVKHG------------L 199
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+L V N+L+D Y K L AH F + + LV+WN++ I+ Q
Sbjct: 200 SGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI------------ISANEQG 247
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG-KEIHGYVLRHHIQLSTGV 299
G A+E F M+++ + P+ ++L + +A AQ G +LG K +H YV R
Sbjct: 248 GKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQC-GDELGAKSVHCYVRR--------- 297
Query: 300 GIALISIQGLGTGSFV-WNSLIDMYGRCGAIQKNE 333
+G G + N+++DMY + I +
Sbjct: 298 -------RGWDVGDIIAGNAMVDMYAKMSKIDAAQ 325
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 29/176 (16%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H L+ L ++ + SL+ Y + + A+ F ++ ++ + +WNAML+G
Sbjct: 87 QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSG---- 142
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ T+ D A+ RM+ + + ++LS VL C + L +H Y
Sbjct: 143 -----LCRNTRAAD---AVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYA 194
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
++H GL FV N+LID+YG+ G + + W + M ++
Sbjct: 195 VKH----------------GLSGELFVCNALIDVYGKLGMLTEAH-WVFGGMALRD 233
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/458 (28%), Positives = 197/458 (43%), Gaps = 139/458 (30%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
LVNN+L+D YAK Y A F K+ K ++SW ++ +TG G E
Sbjct: 3 LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSL------------VTGCVHNGSYE 50
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL F M + P+ I ++ VL+ACA++ + GK++H L+ + S V +L+
Sbjct: 51 EALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLV 110
Query: 305 S-------------------IQGLGTGSFVWNSLIDMYGRCGAIQKN------------- 332
S IQ + T W +LI Y + G +++
Sbjct: 111 SMYAKCGCIEDANKVFDSMEIQDVIT----WTALIVGYAQNGRGRESLNFYNBMIASGVK 166
Query: 333 --------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
G YF+ M++ Y ++P E Y CM+DLL R+G+ +
Sbjct: 167 PDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKE 226
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS---------------- 406
+ +M +P + C N ++ E AA +LFELEP +
Sbjct: 227 LLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGK 286
Query: 407 ---------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
S KVH F++ D SH +I K+ + IK+
Sbjct: 287 WEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKE 346
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ K + HSEKLA+AFGL++ PG+P+R+ KNLR+CGDCH+
Sbjct: 347 AGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTA 406
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KYVS R +I+ D+ FHHF +GACSC DYW
Sbjct: 407 MKYVSGV----FHRHVILRDSNCFHHFREGACSCSDYW 440
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 156/599 (26%), Positives = 250/599 (41%), Gaps = 183/599 (30%)
Query: 46 AHLIVCGVELCAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+++++ C F+ + F+ M ER++ SW +M+G+Y E +++F+ + +EG
Sbjct: 101 SNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGF 160
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
++ IS + CG +N
Sbjct: 161 --------------KFSEFTIS--------------SVLSACG--------------ANC 178
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
L+ K++H +K L+ +L V +L+D YAKC + A F ++ K V+W++M
Sbjct: 179 DALE-CKKLHCLSMKTS-LDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSM 236
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+AGY Q + E AL + R + ++ N +LS V+ AC+ + G
Sbjct: 237 VAGY------------VQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEG 284
Query: 282 KEIHG------------------------------YVLRHHIQ---------LSTG---- 298
K++H Y++ +Q + +G
Sbjct: 285 KQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKH 344
Query: 299 -----VGIALISIQ--GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351
V I +Q G+ ++SL+ + G G ++ EG R+F++M+ Y + P +
Sbjct: 345 ARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE--EGRRFFKLMRTTYGLSPNV 402
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPS---------SAEPC-NPDIAEHAARHLFE 401
Y CMVD+L RAG + +K +PFEP+ S C N ++AE AA+ LFE
Sbjct: 403 VHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFE 462
Query: 402 LEPLSSG-------------------------------------------KVHSFIAGDT 418
LEP ++G KVH F G++
Sbjct: 463 LEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGES 522
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLIST 464
SH + +I L L E++K GY + HSEKLAL FGL+
Sbjct: 523 SHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCL 582
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GS +R++KNLR+C DCH K S A + R II+ D RFHHF DG CSCG++W
Sbjct: 583 PEGSTVRIMKNLRICVDCHEFMKAASMATR----RFIIVRDANRFHHFSDGHCSCGEFW 637
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 36/177 (20%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HGK + + +L+ D+ ++N L++ Y+KC ++++A F + ++ LVSWN M+ Y
Sbjct: 86 HGKTM------RMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLY 139
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E AL+ F M + + ++S VL+AC K++H
Sbjct: 140 TRNRMESE------------ALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLH 187
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++ + L+ VG A L+D+Y +CG I N+ + FE M+
Sbjct: 188 CLSMKTSLDLNLYVGTA----------------LLDLYAKCGMI--NDAVQVFESMQ 226
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 137/452 (30%), Positives = 192/452 (42%), Gaps = 132/452 (29%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ YA+ L A F ++ ++ VSW+AM + G+ Q GDG AL
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAM------------VNGYVQAGDGREAL 194
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F+RM D++P+ L GVLAACAQ + GK +HGY+ H I+++ G AL+ +
Sbjct: 195 RIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMY 254
Query: 308 G------LGTGSF---------VWNSLID---MYGR------------------------ 325
L F W ++I M+GR
Sbjct: 255 SKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFI 314
Query: 326 ---CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
C ++G F+ M ++Y ++P +E Y CMVDLLAR G + ++KMP
Sbjct: 315 GVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPM 374
Query: 380 EPSS------AEPC----NPDIAEHAARHLFELEPLSSGK-------------------- 409
EP + C N + AE+ A+H LEP SG
Sbjct: 375 EPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREI 434
Query: 410 -----------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM-- 443
+H FI GD SH + I K + + I+ + GY+
Sbjct: 435 RHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPD 494
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEKLA+AF LIS S P+R+ KNLR+C DCH TK +SK
Sbjct: 495 MKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISK 554
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFH F +G CSC DYW
Sbjct: 555 VYG----REIVVRDRTRFHLFKEGTCSCKDYW 582
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+F++MP RN SW++M+ Y G E + +F + E GV AC++
Sbjct: 164 ALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHG 223
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
GK V+ Y+ + + N ++DM+ KCG +++A FE + N+
Sbjct: 224 ALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNV 275
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 67/240 (27%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
+Q+ D+ PD+ + + C + LE G VH +L G+++ F G
Sbjct: 200 MQAEDV-RPDDTVLVG--VLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSK 256
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK-------- 103
+FE+M +NV +WT+M+ + G E V LF + G+
Sbjct: 257 CGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGV 316
Query: 104 --ACSELKDHRVGKDVYD-----YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156
AC+ G++++D Y I K E C ++D+ + G + +E K
Sbjct: 317 LCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGC----MVDLLARNGFL------YEAK 366
Query: 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
+ ++K +E D L+ +LM A CR+ K + +F++ KH +
Sbjct: 367 EM----------------IQKMPMEPDALIWGALM---AGCRFHK--NVEFAEYVAKHWI 405
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 166/649 (25%), Positives = 264/649 (40%), Gaps = 195/649 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG- 60
L M + P+ Y + C L G +VHAH+I L F G
Sbjct: 39 LLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGK 98
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+ ++MPE+NV SWT+M+ Y+ G+ E +++F ++ D
Sbjct: 99 CDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMR----------SDG 148
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ + + +++ +C++ ASG L GK+IH
Sbjct: 149 KPNEFTFATVLT------SCIR---------------ASG------------LALGKQIH 175
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K + +S + V +SL+D YAK ++ A F + ++ +VS A++AGYA
Sbjct: 176 GL-IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYA----- 229
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G E ALE F R+ M+PN ++ + +L A + + GK+ H +VLR
Sbjct: 230 -------QLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 282
Query: 292 HIQLSTGVGIALISI-QGLGTGSFV--------------WNSLIDMYGRCG--------- 327
+ + +LI + G S+ WN+++ Y + G
Sbjct: 283 ELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF 342
Query: 328 -------------------------AIQKNEGWRYFE-MMKKEYNMEPAMEQYCCMVDLL 361
++ G ++ M+ EY ++P E Y C+VD+L
Sbjct: 343 RLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDML 402
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ D+ F+K+MP +P++ C + DI E+ L E+EP ++G
Sbjct: 403 GRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYV 462
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F A D +H ++
Sbjct: 463 ILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLA 522
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
K+ + ++K+ GY+ I GHSEKLAL FGLI+T G P+RV K
Sbjct: 523 KMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFK 582
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K SK ERE+ + D RFH V G CSCGDYW
Sbjct: 583 NLRICVDCHNFAKIFSKV----FEREVSLRDKNRFHQIVKGICSCGDYW 627
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 150/635 (23%), Positives = 251/635 (39%), Gaps = 191/635 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+VT + + C +L+++ G+ +H + I G+E F+ +F
Sbjct: 240 SVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFN 299
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+M R++ SW S++ + + K + VY+ M S
Sbjct: 300 QMKVRDIVSWNSLLAAFE-------------------------QNKKPVIALGVYNKMHS 334
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
I P L + + G F + IH ++ D
Sbjct: 335 IGVV-------PDLLTLVSLASVAAELGNFLSS-----------RSIHGFVTRRCWFLHD 376
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + N+++D YAK ++ A F + K ++SWN+++ GY+ G E D
Sbjct: 377 IALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAI------DV 430
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+++ ++S + PN + +L A +Q+ K G + HG ++++ + V L
Sbjct: 431 YSSMRYYSGAV-----PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCL 485
Query: 304 ISIQGL---------------GTGSFVWNSLIDMYGRCGAIQK----------------- 331
+ + G S WN++I +G G K
Sbjct: 486 VDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDH 545
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+EG F++M++ Y + P+++ Y CMVDL RAG + NF+K
Sbjct: 546 ITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVK 605
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------------- 408
MP P + C N ++ + HL ++E + G
Sbjct: 606 NMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEG 665
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
K+ F G+ +H +I +L L +++K IGY
Sbjct: 666 VDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGY 725
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ K HSE+LA+AFG+IST P + L++ KNLR+CGDCH+ TK+
Sbjct: 726 VPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKF 785
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK EREII+ D+ RFHHF DG CSCGDYW
Sbjct: 786 ISKIT----EREIIVRDSNRFHHFKDGVCSCGDYW 816
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 138/348 (39%), Gaps = 97/348 (27%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG- 60
+D ++ + + IF C K++ L Q+HA L+V G + AFLG
Sbjct: 34 LDGVENEKREIDFNRIFLYCTKVH---LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGD 90
Query: 61 ------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114
F+++ ++V++W SM+ Y +G++ V+ F + ++ DH
Sbjct: 91 IPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQS-----DH--- 142
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
Y + I+ GN L G+++H
Sbjct: 143 ---YTFPPVIRACGN----------------------------------LDDGRKVHCLV 165
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
LK E D+ + S + FY++ ++ +A F + + + +WNAM++G+ L G E
Sbjct: 166 LKLG-FECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAE- 223
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
ALE F M + +++++S +L C Q+ G IH Y ++
Sbjct: 224 -----------ALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK---- 268
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
GL FV N+LI+MY + G ++ E F MK
Sbjct: 269 ------------LGLEFDLFVCNALINMYAKFGELRSAE--TIFNQMK 302
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 163/641 (25%), Positives = 260/641 (40%), Gaps = 173/641 (26%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
LL+ MD+ VTY + + C L L G ++HA +++CG + +R
Sbjct: 348 LLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCG------------LLQR 395
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLI--DEGVYKACSELKDHRVG----KDVYDYMI 122
V S++ MY G E +++F + D+ + A + + VG +D +
Sbjct: 396 EVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNA---VINASVGNSKFQDALELFH 452
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
++ EG + +L + CG +E LK ++IH +
Sbjct: 453 GMELEGLRSNEFTLLSLLEACGGLED---------------LKLARQIHARAAAGGFGGN 497
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
V NS+++ YA+C L A F +++K LV+W+ +LA YA ++ G
Sbjct: 498 STAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQ----------SKDGP 547
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGI 301
G A +FF M ++P ++ L ACA + + G+ +H ++ S +G
Sbjct: 548 GRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGN 607
Query: 302 ALISIQG-LGTGS--------------FVWNSLIDMYGRCG-------AIQK-------- 331
+I++ G G+ S WNSLI Y G ++Q+
Sbjct: 608 TIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDP 667
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD----- 368
G +F +++ +EP+ Q C+VDLLAR G D
Sbjct: 668 DSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEEL 727
Query: 369 ---------DTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGK---------- 409
DT+ +M + S +P A +FELEP SG
Sbjct: 728 ILASPACQADTIAWMTLLAACKSYG---DPQRGIRCAERVFELEPQHSGSFVVLANLYAS 784
Query: 410 ---------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSE 436
VH FI+G++ H + +I E L +L
Sbjct: 785 VGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLR 844
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+++ GY+ K HSE+LA+ FGL+ST PG +RV+KNLR+C DC
Sbjct: 845 MREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDC 904
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ TK +S REI++ D+ RFHHF G CSCGD+W
Sbjct: 905 HAATKIISSVVG----REIVVRDSSRFHHFKHGQCSCGDFW 941
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 83/328 (25%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
L +F+ + +NVFSWT MM Y+ G+Y E + LF + EG D
Sbjct: 12 LMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRP------------DKV 59
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
++I++ +AC ASGE L HG++IH +
Sbjct: 60 VFVIAL----DACA----------------ASGE-----------LDHGRQIHSS-VVGS 87
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L S+++++NSL++ Y KC+ + A F + + +VSW AMLA YA
Sbjct: 88 GLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYA------------ 135
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
Q G ALE SRM ++PN ++ ++ CA+++ LG++IH ++
Sbjct: 136 QNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIIN-------- 187
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM--EPAMEQYCC 356
+GL + N+L+ MYG CG+ F+ MK ++ + ++ +
Sbjct: 188 --------EGLEPDGILGNALVHMYGSCGS---------FDDMKSVFSRMGQSSVLLWTT 230
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA 384
M+ ++ GQ+++ L +KM E A
Sbjct: 231 MIAGCSQNGQYEEGLLVFRKMDLEGVKA 258
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/397 (23%), Positives = 153/397 (38%), Gaps = 105/397 (26%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
L MD VT+ I C KL L+LG ++H +I G+E LG
Sbjct: 147 LSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGS 206
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------- 101
+F +M + +V WT+M+ + G YEE + +F + EGV
Sbjct: 207 CGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSM 266
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF 158
+ C L + G+ + ++ F + + ++ ++ +CG ++ A G E ++D
Sbjct: 267 VEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDV 326
Query: 159 ---------------------------------------------SNLSLLKHGKEIHPH 173
+NL L G+EIH
Sbjct: 327 VAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHAR 386
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L L+ ++ V NS++ Y KC + A F + +K VSWNA++
Sbjct: 387 VLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINAS-------- 438
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
G +++ D ALE F M ++ N +L +L AC ++ KL ++IH
Sbjct: 439 -VGNSKFQD---ALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGF 494
Query: 294 QL-STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
ST VG NS+++MY RCG++
Sbjct: 495 GGNSTAVG----------------NSVVNMYARCGSL 515
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 99/442 (22%), Positives = 163/442 (36%), Gaps = 115/442 (26%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG------- 60
T PD+ V + + C L+ G Q+H+ ++ G+ L G
Sbjct: 54 TRPDK--VVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPC 111
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F+ M R+V SWT+M+ +Y G + + + + EGV C++
Sbjct: 112 AEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAK 171
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----------RMEMAS------- 150
L+ +G+ ++ +I+ E + + ++ M+ CG RM +S
Sbjct: 172 LRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTM 231
Query: 151 -------GEFEEKDF------------------------SNLSLLKHGKEIHPHHLKKDD 179
G++EE NL +K G+ I L+
Sbjct: 232 IAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPF 291
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
S LL SL+ Y +C L A + Q+ +V+WNAM +T Q
Sbjct: 292 CSSTLLA-TSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAM------------VTACAQ 338
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR-HHIQLSTG 298
GD A+ RM N ++ VL ACA ++ G+EIH VL +Q
Sbjct: 339 NGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVA 398
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
VG NS+I MYG+CG Q FE M ++ ++ + ++
Sbjct: 399 VG----------------NSVITMYGKCG--QTEAAMSVFEAMPRKDDV-----SWNAVI 435
Query: 359 DLLARAGQFDDTLNFMKKMPFE 380
+ +F D L M E
Sbjct: 436 NASVGNSKFQDALELFHGMELE 457
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 35/188 (18%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y KC + A F I K++ SW M+A Y+ G E ALE F+R
Sbjct: 1 MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYRE------------ALELFTR 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M +P+ + L ACA G++IH V VG GL +
Sbjct: 49 MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSV----------VG------SGLTSN 92
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+ NSL++MYG+C + E + F+ M + + + M+ + A+ G + L
Sbjct: 93 IIISNSLVNMYGKCQDVPCAE--KVFDGM-----LLRDVVSWTAMLAVYAQNGCWSQALE 145
Query: 373 FMKKMPFE 380
+ +M E
Sbjct: 146 CLSRMDAE 153
>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 694
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 146/594 (24%), Positives = 243/594 (40%), Gaps = 202/594 (34%)
Query: 19 DECT----VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------------- 60
DEC VTY + C ++ +L+LG++VHA L+ G+ F+G
Sbjct: 214 DECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVL 273
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD 116
+F+ + RNV WT++M Y GY+EE +NLF + EG +
Sbjct: 274 NARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLP------------N 321
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
Y + + + NAC + ++ L+HG +H ++
Sbjct: 322 EYTFAVLL----NAC---------------------------AGIAALRHGDLLHAR-VE 349
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K ++ ++V N+L++ Y+K + ++ F+ + + +++WNAM+ GY
Sbjct: 350 KLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGY----------- 398
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+ +G G+ AL+ F M+ + PN ++ GVL+A
Sbjct: 399 -SHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSA------------------------- 432
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
Y G ++ EG+ Y + + + +EP +E Y C
Sbjct: 433 --------------------------YSHLGLVK--EGFYYLNHLMRNFKIEPGLEHYTC 464
Query: 357 MVDLLARAGQFDDTLNFMKKMPFE------PSSAEPC----NPDIAEHAARHLFELEPLS 406
MV LL+RAG D+ NFMK + + C N D+ A + +++P
Sbjct: 465 MVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHD 524
Query: 407 SGK-------------------------------------------VHSFIAGDTSHSLV 423
G +H F++ ++H
Sbjct: 525 VGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPES 584
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSP 469
+I +K+ +L + IK +GY+ I + HSEKLALA+GL+ +P
Sbjct: 585 IQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAP 644
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+IKNLRMC DCH+ K +SK R II+ D RFHHF DG+C+C D+W
Sbjct: 645 IRIIKNLRMCDDCHTAVKLISKVTN----RLIIVRDANRFHHFRDGSCTCLDHW 694
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 116/289 (40%), Gaps = 78/289 (26%)
Query: 46 AHLIV-CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA 104
HL V CG +L +F+ MP RNV SW +M Y G + E++ LF
Sbjct: 57 VHLYVKCG-QLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLF----------- 104
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-CGRMEMASGEFEEKDFSNLSL 163
M+S++ NAC V + C G +E + L
Sbjct: 105 --------------KNMVSLQ---NACPNEYVFTTALSACSH----GGRVKEGMQCHGLL 143
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH---LVSWNA 220
K G H + V ++L+ Y++C ++++A + +H + S+N+
Sbjct: 144 FKFGLVCHQY------------VKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNS 191
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
+L + G GE A+E RM+ + + ++ GV+ CAQ++ +L
Sbjct: 192 VL------------NALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQL 239
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
G +H +LR GL FV + LIDMYG+CG +
Sbjct: 240 GLRVHARLLR----------------GGLMFDEFVGSMLIDMYGKCGEV 272
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 99/225 (44%), Gaps = 35/225 (15%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVN--NSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
+++ L GK +H L ++ + ++ NSL+ Y KC L +A F + +++V
Sbjct: 23 ADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVV 82
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQV 275
SWN ++AGY GG E+ L F M+ + PN + L+AC+
Sbjct: 83 SWNVLMAGYLHGGNHLEV------------LVLFKNMVSLQNACPNEYVFTTALSACSHG 130
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
K G + HG + + GL +V ++L+ MY RC ++
Sbjct: 131 GRVKEGMQCHGLLFKF----------------GLVCHQYVKSALVHMYSRCSHVEL--AL 172
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + E+ + + Y +++ L +G+ ++ + +++M E
Sbjct: 173 QVLDTVPGEHVND--IFSYNSVLNALVESGRGEEAVEVLRRMVDE 215
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/588 (27%), Positives = 236/588 (40%), Gaps = 194/588 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+FE+M RN WTSM+ Y E + L+ + ++G + AC+ELKD
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDFSNLSLL--- 164
VG ++ ++ + + A + +++M+ KCG ++ A F++ KD S L
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFG 255
Query: 165 -----------------KHGKEIHPHHL----------KKDDLESDLLV----------- 186
G + P+ + + DLE+ V
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 187 ----NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
NNSL+D ++KC + A F + K L+SWN+M+ G AL G
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGL------------ 363
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL F M TD+QP+ I+ GVL AC+
Sbjct: 364 GREALAQFHLMQTTDLQPDEITFIGVLTACSHA--------------------------- 396
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G +Q EG + F ++ Y + E Y CMVDLL
Sbjct: 397 ------------------------GLVQ--EGKKLFYEIEALYGVRLKSEHYGCMVDLLC 430
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG + F++ MP +P A C N ++ E AAR L ELEP + G
Sbjct: 431 RAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYIL 490
Query: 409 ---------------KV------------------------HSFIAGDTSHSLVHKISEK 429
KV HSF+AGD SH + +IS
Sbjct: 491 LSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIM 550
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L ++ ++K +GY+ K HSEKLAL +GL+ + G + ++KN
Sbjct: 551 LRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKN 610
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K VSK +R+I + D RFHHF DG+CSC DYW
Sbjct: 611 LRVCSDCHTLIKLVSKI----YQRQITLRDRNRFHHFKDGSCSCRDYW 654
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 135/326 (41%), Gaps = 89/326 (27%)
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
MP R + S+T M+ E N+ + K C+ L + +VGK ++ ++
Sbjct: 58 MPRRALQSYTEML---------ERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKY 108
Query: 125 KFEGNACVKRPVLDMFIKCGRME-------------------MASG-------------- 151
+ ++ +L+M+ CG ++ M SG
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 152 -EFEEKDFS--------------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
+ EE FS L L G ++H H +++ D++ ++ ++L++ YAK
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH-IREMDMKICAVLGSALVNMYAK 227
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI-Q 255
C LK A F ++ K + +W+A++ GY E AL+ F +
Sbjct: 228 CGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTE------------ALQLFREVAGG 275
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
++M+PN +++ V++ACAQ+ + G+ +H Y+ R S +
Sbjct: 276 SNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN--------------- 320
Query: 316 WNSLIDMYGRCGAIQKNEGWRYFEMM 341
NSLIDM+ +CG I + R F+ M
Sbjct: 321 -NSLIDMFSKCGDIDAAK--RIFDSM 343
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
K GK +H +K L SDL + +L++ YA C LK A F ++ ++ V W +M++G
Sbjct: 96 KVGKVLHGQVVKYM-LHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISG 154
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
Y E AL + +M + P+ ++++ +++ACA++K +G ++
Sbjct: 155 YMKNHCPNE------------ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202
Query: 285 HGYVLRHHIQLSTGVGIALISIQG----LGTGSFVWNSLID---------MYGRCGAIQK 331
H ++ +++ +G AL+++ L T V++ L D ++G +
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRS 262
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
E + F + NM P ++ A+ G +
Sbjct: 263 TEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/523 (30%), Positives = 223/523 (42%), Gaps = 151/523 (28%)
Query: 147 EMASGEFEEKDFSNLSLLKH-----GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+M + + F+ SLLK + +H H +K L S L V+ L+D YA+ +
Sbjct: 111 QMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFG-LSSHLYVSTGLVDAYARGGDVA 169
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGD 242
A F + ++ LVS+ AML YA G E I G+ Q+G
Sbjct: 170 SAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGC 229
Query: 243 GETALEFFSRMIQT-------DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL FF +M+ ++PN I++ VL++C QV + GK +H YV + I++
Sbjct: 230 PNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKV 289
Query: 296 STGVGIALI-------SIQGL--------GTGSFVWNSLIDMYGRCG----AIQ------ 330
+ VG AL+ S++ G WNS+I YG G A+Q
Sbjct: 290 NVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMC 349
Query: 331 -----------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
++GW F+ MK Y MEP +E Y CMV+LL RAG+
Sbjct: 350 CIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRM 409
Query: 368 DDTLNFMKKMPFEPS--------------SAEPCNPDIAE-------------------- 393
+ + ++ M EP S +IAE
Sbjct: 410 QEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMY 469
Query: 394 HAARHLF--------------ELEPLSSG-----KVHSFIAGDTSHSLVHKISEKLMRLY 434
AAR+ E EP S +VH F+AGD H I L ++
Sbjct: 470 AAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMN 529
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+K+ Y + A HSEKLALAFGLISTSPG+ ++++KNLR+C
Sbjct: 530 GWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCL 589
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K +SK R+IIM D RFHHF +G+CSC DYW
Sbjct: 590 DCHAVMKIMSKISG----RKIIMRDRNRFHHFENGSCSCRDYW 628
>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
Length = 869
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/645 (24%), Positives = 251/645 (38%), Gaps = 194/645 (30%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
P V +W +M+ + G E + + Y ++ GV ACS+L+ +G+
Sbjct: 232 PGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGR 291
Query: 116 DVYDYMI-SIKFEGNACVKRPVLDMFIK----------------------------CG-- 144
+++ Y++ N+ V ++DM+ CG
Sbjct: 292 EMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYA 351
Query: 145 -------------RMEMASGEF-EEKDFSNL------SLLKHGKEIHPHHLKKDDLESDL 184
RME +G E + + S GKE ++ K + +
Sbjct: 352 QAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNP 411
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------FREEITGF 237
V N+LMD YA+ ++ A F+ I+ + +VSWN ++ G + G E+
Sbjct: 412 FVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQ 471
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
++ D T + + + + PN ++L +L CA + GKEIHGY +RH +
Sbjct: 472 GRFTDATTE-DGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDI 530
Query: 298 GVGIALISIQG------LGTGSF---------VWNSLIDMYGRCG-----------AIQK 331
VG AL+ + L F WN LI YG G +
Sbjct: 531 AVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMS 590
Query: 332 NE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
NE G F MK+ + ++P + + C VD+L RAG+ D
Sbjct: 591 NEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLD 650
Query: 369 DTLNFMKKMPFEPSSAE---------PC----NPDIAEHAARHLFELEPLSS-------- 407
+ + + M EP + C N + E AA LF+LEP +
Sbjct: 651 EAYSIITSM--EPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCN 708
Query: 408 -----------------------------------GKVHSFIAGDTSHSLVHKISEKLMR 432
G +H F+AG+++H + +
Sbjct: 709 IYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDA 768
Query: 433 LYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L+ ++ GY + HSEKLA+AFGL+ T PG+ +RV KNLR+
Sbjct: 769 LWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRV 828
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH K++S R REI++ D RFHHFVDGACSCGDYW
Sbjct: 829 CNDCHEAAKFIS----RMVGREIVLRDVRRFHHFVDGACSCGDYW 869
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/328 (27%), Positives = 145/328 (44%), Gaps = 56/328 (17%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKL-NNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
L+ M L + T + C L +L LG + HA + G FL E+
Sbjct: 150 LRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNG-----FLDGDER---- 200
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-YDYMISIKFE 127
F++ +++ MY LG ++ LF + D G V ++ M+S+ +
Sbjct: 201 --FAFNALLSMYARLGLVDDAQMLF----------GSVDTTDSPGGGVVTWNTMVSLLVQ 248
Query: 128 GNACVK--RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
C + + DM + R + + S L +L G+E+H + LK DL ++
Sbjct: 249 SGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSF 308
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKH--LVSWNAMLAGYALGGFREEITGFTQYGDG 243
V ++L+D YA + VA F + H L WNAM+ GYA G EE
Sbjct: 309 VASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE---------- 358
Query: 244 ETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
ALE F+RM + + P+ +++GVL ACA+ + F + +HGYVL+
Sbjct: 359 --ALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLK------------ 404
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+G+ FV N+L+D+Y R G ++
Sbjct: 405 ----RGMADNPFVQNALMDLYARLGDME 428
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/339 (21%), Positives = 130/339 (38%), Gaps = 87/339 (25%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG +L A L +F MP R+ ++ S++ + + A L+D
Sbjct: 109 CG-DLTAALALFNAMPSRDAVTFNSLIAALCLFRRW---------------LPALDALRD 152
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ EG+ ++ + + C + +D L+ G+E
Sbjct: 153 -------------MLLEGHPLSSFTLVSVLLACSHLA--------ED------LRLGREA 185
Query: 171 HPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-----LVSWNAMLAG 224
H LK L+ D N+L+ YA+ + A F + +V+WN M
Sbjct: 186 HAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTM--- 242
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
++ Q G A+E M+ ++P+ I+ + L AC+Q++ LG+E+
Sbjct: 243 ---------VSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREM 293
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG---RCGAIQKNEGWRYFEMM 341
H YVL+ L SFV ++L+DMY R G + R F+M+
Sbjct: 294 HAYVLKD---------------SDLAANSFVASALVDMYASHERVGVAR-----RVFDMV 333
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + MV A+AG ++ L +M E
Sbjct: 334 PGGHRQ---LGLWNAMVCGYAQAGMDEEALELFARMEAE 369
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 130/296 (43%), Gaps = 38/296 (12%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
K + L L + IH L++D L V N+L+ YA+C L A F+ + +
Sbjct: 67 KSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRD 126
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
V++N+++A L FR + AL+ M+ ++ +L VL AC+
Sbjct: 127 AVTFNSLIAALCL--FRRWL----------PALDALRDMLLEGHPLSSFTLVSVLLACSH 174
Query: 275 V-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ + +LG+E H + L++ G F +N+L+ MY R G + ++
Sbjct: 175 LAEDLRLGREAHAFALKNGFL--------------DGDERFAFNALLSMYARLGLV--DD 218
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAE 393
F + + + + MV LL ++G+ + + + M A PD
Sbjct: 219 AQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDM-----VARGVRPDGIT 273
Query: 394 HAAR--HLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
A+ +LE LS G+ +H+++ D+ + ++ L+ +Y+ +++G +R+
Sbjct: 274 FASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRV 329
>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Brachypodium distachyon]
Length = 647
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 148/582 (25%), Positives = 230/582 (39%), Gaps = 152/582 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE + +RNV SW ++G I G + EL D ++V +
Sbjct: 99 LFEGISKRNVMSWNILIGG----------------CIKNGDLGSARELFDKMPTRNVATW 142
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLK 176
+ N + L F+ R M EF + L + G+++H + +
Sbjct: 143 NAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAY-VV 201
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ ++SD+ V NSL Y +C L + +VS+N +AG
Sbjct: 202 RSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGR----------- 250
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
TQ GD E ALE+FS M ++ P+ ++ ++ C+ + G+++H V++ +
Sbjct: 251 -TQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKV 309
Query: 297 TGVGIALISIQG----LGTGSFVWNS--------LIDMYGRCG-------AIQ------- 330
V +L+ + LG V++ L M CG A++
Sbjct: 310 VPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMN 369
Query: 331 ----------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
K+EG +FE+M K Y +P+++ Y C+VDLL R+G D
Sbjct: 370 GGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLD 429
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----------- 407
+ + MP C N D+AE A + E +P S
Sbjct: 430 EAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRA 489
Query: 408 --------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYS 435
G+VH F GD SH +I E L +
Sbjct: 490 TSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMG 549
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+I++ GY K + HSEKLA+AF ++ G P+RV+KNLR+C D
Sbjct: 550 KIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDD 609
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH K +S+ REI++ D RFHHF DG CSCGDYW
Sbjct: 610 CHVAIKLISQVTG----REIVVRDVSRFHHFRDGRCSCGDYW 647
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 35/171 (20%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFRE------ 232
D N+L+ YA L A F I +++++SWN ++ G LG RE
Sbjct: 76 DRFTTNNLLLAYADLGDLPTARHLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMP 135
Query: 233 ---------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ G T G E +L+FF M + M P+ L V CA + G++
Sbjct: 136 TRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQ 195
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+H YV+R G+ + V NSL MY RCG + + E
Sbjct: 196 VHAYVVR----------------SGMDSDMCVGNSLAHMYMRCGCLAEGEA 230
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 146/536 (27%), Positives = 214/536 (39%), Gaps = 185/536 (34%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------- 153
KAC L GK ++ + I F+ + V +LDM+IKCG M A F
Sbjct: 38 KACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDV 97
Query: 154 --------------------------------EEKDFSNL-------SLLKHGKEIHPHH 174
+E F+ L + L+ G+++H +
Sbjct: 98 AWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANV 157
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K D + SD V SL+D YAKC ++ A+ F K+ +++ WNAML G A
Sbjct: 158 IKLDCV-SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLA-------- 208
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q+G+ E A+ F M ++P+ +S G+L+AC+ H
Sbjct: 209 ----QHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS------------------HAG 246
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
L++ E + Y M +Y +EP +E Y
Sbjct: 247 LTS-----------------------------------EAYEYLHSMPNDYGIEPEIEHY 271
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
C+VD L RAG + ++ MPF+ S++ C + + + A LF LEP
Sbjct: 272 SCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLFALEP 331
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
S +H F+ D SH
Sbjct: 332 FDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHP 391
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
I +K+ + I++ GY+ K HSEKLA+A+GLIST
Sbjct: 392 QADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPAS 451
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ +RVIKNLR+CGDCH+ KY+SK EREI++ D RFHHF DG CSCGDYW
Sbjct: 452 TTIRVIKNLRVCGDCHNAIKYISKV----FEREIVLRDANRFHHFRDGVCSCGDYW 503
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 210/509 (41%), Gaps = 143/509 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F + F++ SLL G+ +H L+ L D V SL+ Y+ C L A F +I Q
Sbjct: 69 FLLQSFASPSLLHLGRSVHAQILRFG-LAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQ 127
Query: 213 KHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRM 253
L SWN+++ G + I G+ + G + AL F M
Sbjct: 128 PDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREM 187
Query: 254 IQ---TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---- 306
D++PN ++SGVLAAC ++ + GK H Y+ + + + +G ALI +
Sbjct: 188 QMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKC 247
Query: 307 ----------QGLGTGSFV--WNSLID---MYG-----------------RCGAIQ---- 330
LG V W+++I M+G R A+
Sbjct: 248 GSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAV 307
Query: 331 ---------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
+EG Y M ++Y++ P ++ Y CMVDL RAG+ + N +K MP EP
Sbjct: 308 FCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEP 367
Query: 382 S--------SAEPCNPDI--AEHAARHLFELEPLSSGK---------------------- 409
S + DI E A + L ELEP +SG
Sbjct: 368 DVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRD 427
Query: 410 ---------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
+H F GD SH +I L + +K GY+
Sbjct: 428 LMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKE 487
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K + HSEKLALA+G + TSPG+P+R++KNLR+C DCH K +SK
Sbjct: 488 VLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKV-- 545
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D RFHHF G CSC DYW
Sbjct: 546 --FDREIIVRDCNRFHHFTQGLCSCRDYW 572
>gi|297733830|emb|CBI15077.3| unnamed protein product [Vitis vinifera]
Length = 804
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 167/679 (24%), Positives = 270/679 (39%), Gaps = 211/679 (31%)
Query: 24 TYALIFQRCPKLNNLE-LGIQVHAHLIVCGVELCAFLG------------------MFEK 64
T+ +F C + L G VH ++ G E F+G +F++
Sbjct: 158 TFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDE 217
Query: 65 MPERNVFSWTSMMGMYNVLG-YYEEIVNLFYLLI--DE---------GVYKACSELKDHR 112
MP+R+V +WTS++ Y + G +Y E + F ++ DE + AC+ L
Sbjct: 218 MPQRDVITWTSVVKGYAMRGEFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALD 277
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKE 169
GK ++ Y+ + ++ + ++DM+ KCGR++ A F+ ++D + + G
Sbjct: 278 QGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 337
Query: 170 IH--------------PHHLKKDDL-----------------------------ESDLLV 186
+H K DD+ ES+L V
Sbjct: 338 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEEIVHGMVVKSGFESNLYV 397
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
NS+++ + ++ A F+++ ++ + SW ++L GYA ++G+ + A
Sbjct: 398 GNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYA------------KHGEMDRA 445
Query: 247 -LEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
L FF M+ D + PN L VL+ACA + G IH Y+ + I+ S+ + ALI
Sbjct: 446 SLTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALI 505
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQ----------KNEGWRYFEM-------------- 340
DMY +CG I K + + M
Sbjct: 506 ----------------DMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDAL 549
Query: 341 --------MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------S 382
M+ + + P +E Y C +DLL RAG + L +K MP EP +
Sbjct: 550 RGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSA 609
Query: 383 SAEPCNPDIAEHAARHLFELEPLS------------------------------------ 406
S N ++ E H+ +L+
Sbjct: 610 SRIHHNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESS 669
Query: 407 --------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------K 444
+G VH F D H + +I KL + + +IGY K
Sbjct: 670 PGCSWIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEK 729
Query: 445 RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
HSEKLA+AFGL+ST PG+ +R++KNLR C DCHS K +S+ REI++
Sbjct: 730 EQAVAWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYG----REIVVR 785
Query: 505 DNYRFHHFVDGACSCGDYW 523
D RFH F++G CSC D+W
Sbjct: 786 DRSRFHTFIEGDCSCKDFW 804
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 160/650 (24%), Positives = 258/650 (39%), Gaps = 205/650 (31%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG------------MFEKMPE 67
+ QRC + L Q+H ++ G+ +L AF +F+++
Sbjct: 24 LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFE 127
N F W +M+ Y+ EE + L++ ++ H V + Y + +K
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLY------------HSVPHNAYTFPFLLK-- 126
Query: 128 GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
AC S++S L+ ++IH H +K S++
Sbjct: 127 --AC---------------------------SSMSALEETQQIHAHIIKMG-FGSEIYTT 156
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
NSL++ Y+K +K A F ++ Q+ VSWN+M+ GY G
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNII 216
Query: 230 -FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ I+G G + AL F RM ++ + ++L L ACA + GK IH Y+
Sbjct: 217 SWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYI 276
Query: 289 LRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYG--------- 324
+H I++ +G LI + G VW ++I Y
Sbjct: 277 KKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREAL 336
Query: 325 ------RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ ++ N E FE M++ + +P++E Y CMVDL
Sbjct: 337 EWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDL 396
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------ 404
L RAG + ++ MP +P++A C N ++ + + L +++P
Sbjct: 397 LGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRY 456
Query: 405 --LSS-----------------------------------GKVHSFIAGDTSHSLVHKIS 427
L+S G H F+AGD SH + +I
Sbjct: 457 IHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEID 516
Query: 428 EKLMRLYSEIKKIGYMKRIPACG--------------HSEKLALAFGLISTSPGSPLRVI 473
L ++ +++ GY ++ HSEKLA+ FGLIST PG +R++
Sbjct: 517 HMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIV 576
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCH+ K +SK REI+M D RFH F DG C+CGDYW
Sbjct: 577 KNLRVCEDCHTVIKLISKV----YAREILMRDRTRFHLFKDGNCTCGDYW 622
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 172/629 (27%), Positives = 252/629 (40%), Gaps = 182/629 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
T+ +F+ L+ G Q+HA + G L F+G S MY+
Sbjct: 111 TFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVG-------------CSAFDMYSKT 157
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G E N+F DE HR YM NA LD
Sbjct: 158 GLRPEARNMF----DE---------MPHRNLATWNAYM------SNAVQDGRCLDAIAAF 198
Query: 144 GRMEMASGEFEEKDF-------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
+ GE F +++ L+ G+++H + + D+ V N L+DFY K
Sbjct: 199 KKFLCVDGEPNAITFCAFLNACADIVSLELGRQLH-GFIVRSRYREDVSVFNGLIDFYGK 257
Query: 197 CRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
C + + FS+I ++++VSW ++LA Q + E A F +
Sbjct: 258 CGDIVSSELVFSRIGSGRRNVVSWCSLLAA------------LVQNHEEERACMVFLQA- 304
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314
+ +++P +S VL+ACA++ G +LG+ +H L+ ++ + VG AL+ + G GS
Sbjct: 305 RKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYG-KCGSI 363
Query: 315 ----------------VWNSLIDMYG---------------------------------- 324
WN++I Y
Sbjct: 364 EYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLS 423
Query: 325 ---RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
R GA+++ G + FE M+ Y +EP E Y C+VDLL R+G D F+K+MP P
Sbjct: 424 ACSRAGAVER--GLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILP 481
Query: 382 SSA------EPCN----PDIAEHAARHLFELEPLSSG----------------------- 408
+ + C + + AA LFEL+P SG
Sbjct: 482 TISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRK 541
Query: 409 --------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
+VH F A D+ H +I L +L E+KK GY+
Sbjct: 542 EMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANL 601
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSEK+ALAFGLI+ G P+R+ KNLR+C DCHS K++SK
Sbjct: 602 SLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVG 661
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ DN RFH F DG CSC DYW
Sbjct: 662 ----REIIVRDNNRFHRFKDGWCSCKDYW 686
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 20/104 (19%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------- 60
+ LQ+ P + ++ L C +L LELG VHA + VE F+G
Sbjct: 300 VFLQARKEVEPTDFMISSVL--SACAELGGLELGRSVHALALKACVEENIFVGSALVDLY 357
Query: 61 -----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F +MPERN+ +W +M+G Y LG + ++LF
Sbjct: 358 GKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLF 401
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 33/171 (19%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAFLGMF 62
+T+ C + +LELG Q+H ++ CG + + L +F
Sbjct: 210 AITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSEL-VF 268
Query: 63 EKM--PERNVFSWTSMMGMYNVLGYYEEIVNLFYL----------LIDEGVYKACSELKD 110
++ RNV SW S++ V + EE + +L + V AC+EL
Sbjct: 269 SRIGSGRRNVVSWCSLLAAL-VQNHEEERACMVFLQARKEVEPTDFMISSVLSACAELGG 327
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
+G+ V+ + E N V ++D++ KCG +E A F E NL
Sbjct: 328 LELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNL 378
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 14/148 (9%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
E S SLL G+ +H H L+ D + N L++ Y+K A S
Sbjct: 14 LESAVLSRSSLL--GRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNP 71
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ +V+W ++ I+G +AL FS M + + PN + V A
Sbjct: 72 RTVVTWTSL------------ISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKAS 119
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A + GK++H L+ L VG
Sbjct: 120 ASLHMPVTGKQLHALALKGGNILDVFVG 147
>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 596
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 167/643 (25%), Positives = 257/643 (39%), Gaps = 210/643 (32%)
Query: 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MF 62
C +L F R +L G+Q+HAH+I G++ L +F
Sbjct: 24 CNTLLSLTFSR-----SLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIF 78
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
P ++ +W+S++ + +N F L++ +GV D + +
Sbjct: 79 HDSPHKSATTWSSVISSFAQNDLPLLSLNYFRLMLRQGV------------PPDDHIFPS 126
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ K CG LS L K +H LK
Sbjct: 127 ATK----------------SCGI---------------LSSLPVAKMLHCFALKTA-YHL 154
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V +S++D YAKC + AH F ++ +++VSW+ ++ GY Q G+
Sbjct: 155 DIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGY------------VQLGE 202
Query: 243 GETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ +L F R + + + N +LS VL C ++G+ IHG + S V
Sbjct: 203 DDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVA 262
Query: 301 IALIS-------------------IQGLGTGSFVWNS----------------LIDMYGR 325
+LIS ++ LG +WN+ L D
Sbjct: 263 SSLISLYSKCGVVEEAYDVFEEVTVRNLG----MWNAMLIACAQHAHTDKTFELFDKMKS 318
Query: 326 CGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
G ++ N +G YFE+MK +Y +EP + Y MVDLL RAG+
Sbjct: 319 VGGMKANFITFLCVLYACSHAGLVEKGKYYFELMK-DYGIEPGTQHYSTMVDLLGRAGKL 377
Query: 368 DDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------- 408
+D + +++MP EP+ + C N +A + A + EL +SSG
Sbjct: 378 NDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAY 437
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
++H+F AGD SH+ +I +KL L
Sbjct: 438 AAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELG 497
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
E+ K GY+ K HSE+LA+AFG I+ G P+RV+KNLR+CG
Sbjct: 498 EEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCG 557
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K++SK R II+ DN RFH F DG C+CGDYW
Sbjct: 558 DCHTAIKFISKCTG----RVIIVRDNNRFHRFEDGKCTCGDYW 596
>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
Length = 655
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 150/623 (24%), Positives = 250/623 (40%), Gaps = 162/623 (26%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+ F ++ E+N +S+ MMG Y +++ + LF I+E V K+C+ L
Sbjct: 37 VAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHL 96
Query: 109 KDHRV--GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+ + GK+++ + I+ F + V+ ++ M+ KCG + A+G FE+ + NL
Sbjct: 97 GEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTS 156
Query: 167 GKEIHPH---HLKKDDLESDLLVNNSLMDFYAKCRYLKVA---------HCKFSKIKQKH 214
+ + H H++ +L +L + D YA L V H K +++
Sbjct: 157 MIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRT 216
Query: 215 LVSWNAMLAGYA-------------------LGGFREEITGFTQYGDGETALEFFSRMIQ 255
V NA++ Y L + I F +Y DG A+ + M
Sbjct: 217 PVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEG 276
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-- 313
+++PN + + VL AC+++ GKEIH V AL+++ +
Sbjct: 277 RNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHE 336
Query: 314 -------------FVWNSLIDMYGRCGAIQ------------------------------ 330
F W SL+ Y + G Q
Sbjct: 337 ARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSH 396
Query: 331 ---KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----- 382
+EG YF M++++ + P Y CM+DLL R G+ + ++ MP+ P
Sbjct: 397 SGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWT 456
Query: 383 ---SAEPCNPD--IAEHAARHLFELEPLSSG----------------------------- 408
SA D I A + + EL P SG
Sbjct: 457 ILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRG 516
Query: 409 --------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY------------ 442
++H F+ GDT+H L +I +L ++ ++ GY
Sbjct: 517 LAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVN 576
Query: 443 --MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
+K HSE++AL GL+++ G+ L ++KNLR+C DCHS K VSK R+
Sbjct: 577 EEVKPELLLFHSERMALGLGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKM----LHRK 632
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
+++ D++RFH F G+CSCGDYW
Sbjct: 633 VLVRDSHRFHIFQRGSCSCGDYW 655
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 44/219 (20%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E + + N L+ Y +C+ + A FS+I +K+ S+ M+ Y ++
Sbjct: 14 EKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKK------- 66
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL--GKEIHGYVLRHHIQLSTG 298
AL+ F + I ++Q N + VL +CA + L GKEIH RH I
Sbjct: 67 -----ALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIH----RHAIA---- 113
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCM 357
QG GT V NSLI MY +CG+ + G FE MEP + Y M
Sbjct: 114 --------QGFGTDLVVQNSLIHMYAKCGSFKFAAG--VFE------KMEPKNLISYTSM 157
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA 396
+ + + KKM +E PDI +AA
Sbjct: 158 IQAYTHTAKHVEAYELYKKM-----LSEGIMPDIYAYAA 191
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 156/603 (25%), Positives = 246/603 (40%), Gaps = 187/603 (31%)
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144
+ + + NL YLL + C++ + G+ + +I I E + +++M+ KC
Sbjct: 39 HIDRVSNLHYLL------QLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCS 92
Query: 145 RMEMASGEFEE--------------------KDFSNLSLL----KHGK------------ 168
++ A +F E +D L LL + G
Sbjct: 93 LVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLC 152
Query: 169 ------------EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
++H +K ++S+ V +L+ YAKC +K A F + +K+ V
Sbjct: 153 NCAFKCAILECMQLHAFSIKAA-IDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAV 211
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
+W++M+AGY GF EE AL F + +S ++ACA +
Sbjct: 212 TWSSMMAGYVQNGFHEE------------ALLIFRNAQLMGFDQDPFMISSAVSACAGLA 259
Query: 277 GFKLGKEIHG-----------YVLRHHIQLSTGVGI---ALISIQG-LGTGSFV-WNSLI 320
GK++H YV I + G A + QG L S V WN++I
Sbjct: 260 TLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMI 319
Query: 321 DMYGRCGAIQK---------------------------------NEGWRYFEMMKKEYNM 347
+ R + EG +YF++M +++N+
Sbjct: 320 SGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNL 379
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
P++ Y CM+D+L RAG + +++MPF +S+ C N + AE AA+
Sbjct: 380 SPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAK 439
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
+LFE+EP ++G K+HSF
Sbjct: 440 YLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFT 499
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFG 460
G+ +H + I KL L E+KK+ Y K++ HSEKLA+ FG
Sbjct: 500 VGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFG 559
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
L+ P+R+IKNLR+CGDCH+ K VSK+ REII+ D RFHHF DG CSCG
Sbjct: 560 LMCLPRDIPIRIIKNLRICGDCHTFMKLVSKST----SREIIVRDTNRFHHFKDGFCSCG 615
Query: 521 DYW 523
++W
Sbjct: 616 EFW 618
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 173/635 (27%), Positives = 250/635 (39%), Gaps = 203/635 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL----KDHRV--G 114
+F+KMPERNV SWTSM+ Y G +E LF+ + ++ V L +D RV
Sbjct: 100 VFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEA 159
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
+ ++D MI +K + ++ GR+ A F+E
Sbjct: 160 RRLFD-MIPVK---DVVASTNMIGGLCSEGRLSEAREIFDEMP----------------- 198
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE- 233
+ +++ S++ YA + VA F + K+ V+W AML GY G E
Sbjct: 199 ------QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEA 252
Query: 234 ------------------ITGFTQYG----------------DGE--------------- 244
I GF G DG
Sbjct: 253 AELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFEL 312
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL FS M + ++PN S+ +L+ C + G+++H ++R H L V LI
Sbjct: 313 EALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLI 372
Query: 305 SI----QGLGTGSFV-----------WNSLIDMYGR------------------------ 325
++ L TG V WNS+I Y +
Sbjct: 373 TMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEI 432
Query: 326 --------CGAIQK-NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
CG K EG FE MK +Y ++ E Y CMVDLL RAG+ ++ +N ++
Sbjct: 433 TFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIEN 492
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MP E + C N D+AE AA+ L +LEP S+G
Sbjct: 493 MPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDV 552
Query: 409 -------------------------KVHSFIAGDT-SHSLVHKISEKLMRLYSEIKKIGY 442
KVH F G + SH I +KL +L + +++ GY
Sbjct: 553 AELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGY 612
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K HSEK+A+A+GL+ G P+RV+KNLR+CGDCHS K
Sbjct: 613 CPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKL 672
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+++ REII+ D RFHHF DG CSC D+W
Sbjct: 673 IAQVTG----REIILRDANRFHHFKDGLCSCRDFW 703
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 156/591 (26%), Positives = 237/591 (40%), Gaps = 182/591 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG CA +F+ M R++ SW +M+ Y E + LF +
Sbjct: 104 CGQNDCA-RRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRM-------------- 148
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
HR G + ++ +S AC + + I+C K++
Sbjct: 149 HREGTQMTEFTLSSTL--CACAAKYAI---IEC------------------------KQL 179
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H +K L+S V + +D YAKC +K A F + +K V+W+++ AG+ G
Sbjct: 180 HTIAIKLA-LDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGL 238
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE+ L F + MQ ++S +L+ CA + G ++H +++
Sbjct: 239 HEEV------------LCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVK 286
Query: 291 HHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGR---------- 325
H + V +L+ + G S+ +WN++I + R
Sbjct: 287 HGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMIL 346
Query: 326 -------------------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G ++ EG YF ++ + EP + Y CMVD+
Sbjct: 347 FEKMQQVGIFPNEVTYLSILSACSHTGLVE--EGRHYFNLLLSDRTAEPNVLHYSCMVDV 404
Query: 361 LARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP------ 404
L R+G+ D+ + KMPFEP SS N +A AA LF LEP
Sbjct: 405 LGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNH 464
Query: 405 --LSS-----------------------------------GKVHSFIAGDTSHSLVHKIS 427
LS+ GK+H F+AG+ H + +
Sbjct: 465 VLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVY 524
Query: 428 EKLMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRV 472
KL +Y E++KI + + C HSEKLA AFGLIS P P+ +
Sbjct: 525 NKLEEIYHEMRKISH-RANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITI 583
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K VS ER++I+ D RFHHF DG+CSCGD+W
Sbjct: 584 YKNLRICGDCHSFMKIVSCIT----ERQVIVRDINRFHHFKDGSCSCGDFW 630
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 35/178 (19%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HG IH L +D + N L++ Y KC A F + + ++SWN M+AGY
Sbjct: 79 HGLAIHF------GLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGY 132
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
RE++ AL+ FSRM + Q +LS L ACA K++H
Sbjct: 133 THN--REDVE----------ALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLH 180
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
++ L + SFV + +D+Y +C I K+ W + M +K
Sbjct: 181 TIAIK----------------LALDSSSFVGTAFLDVYAKCNMI-KDACWVFENMPEK 221
>gi|115468046|ref|NP_001057622.1| Os06g0472300 [Oryza sativa Japonica Group]
gi|113595662|dbj|BAF19536.1| Os06g0472300, partial [Oryza sativa Japonica Group]
Length = 397
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 130/432 (30%), Positives = 186/432 (43%), Gaps = 139/432 (32%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L L+ G+++H H LK D DL+++N+L+D Y KC L+ A F ++ Q+ ++SW
Sbjct: 38 TGLVTLEVGRQVHAHVLKYD---KDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISW 94
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
+ M I+G Q G AL+ F M +P
Sbjct: 95 STM------------ISGLAQNGRSIEALKVFDMMKSEGPRP------------------ 124
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
+HI T VG+ ++ A +GW YF
Sbjct: 125 ------------NHI---TMVGV--------------------LFACSHAGLVEDGWYYF 149
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
M+K + ++P E CMVDLL RAG+ DD + F+ +M F+P S C N
Sbjct: 150 SSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKN 209
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
D+A +AA+ + LEP G
Sbjct: 210 ADLAAYAAKEILRLEPDDQGARILLSNTYADLRQWADAEKSWKMMRDRGVKKDPGRSWIE 269
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GH 451
+VH FIAGD SH I ++L RL+S + +GY + H
Sbjct: 270 LGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLGYTPQTEFVLQDLATEQKEDLLKYH 329
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFG ++ G P+R++KNLR+CGDCH+ K VSK+E + II+ D RFHH
Sbjct: 330 SEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSKSEG----KVIIIRDPVRFHH 385
Query: 512 FVDGACSCGDYW 523
F DG CSC DYW
Sbjct: 386 FQDGVCSCNDYW 397
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C L LE+G QVHAH++ +L C L +F +MP+
Sbjct: 29 TLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILHNALLDMYCKCGSLQDADALFGRMPQ 88
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
R+V SW++M+ G E + +F ++ EG
Sbjct: 89 RDVISWSTMISGLAQNGRSIEALKVFDMMKSEG 121
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 206/485 (42%), Gaps = 145/485 (29%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------ 233
L+ D V SL++ Y+ C L+ A F K L +WN+++ YA G ++
Sbjct: 93 LDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFD 152
Query: 234 -------------ITGFTQYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQV 275
I G+ G + AL+ F M + ++PN ++S VL+AC ++
Sbjct: 153 EMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRL 212
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFVWNSL------------ 319
+ GK +H Y+ ++H+++ +G ALI + L V+N+L
Sbjct: 213 GALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAM 272
Query: 320 ---IDMYG---RC------------------------GAIQK----NEGWRYFEMMKKEY 345
+ MYG C GA NEG YF+MM +E+
Sbjct: 273 ICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEF 332
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHA 395
+ P+++ Y CMVDL R+G + +F+ MP EP S DI E A
Sbjct: 333 GITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGA 392
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
+ L EL+P++SG VH
Sbjct: 393 LKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHE 452
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F+ GD S +I L + +++ GY+ K I HSEKLA+A
Sbjct: 453 FVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIA 512
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ T PG+P+R+IKNLR+CGDCH K +SK REI++ D RFHHF DG+CS
Sbjct: 513 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL----FSREIVVRDCNRFHHFRDGSCS 568
Query: 519 CGDYW 523
C D+W
Sbjct: 569 CRDFW 573
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 145/587 (24%), Positives = 231/587 (39%), Gaps = 188/587 (32%)
Query: 32 CPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSW 73
C + LE G QVH+ + G + +++ +F +M ++ SW
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487
Query: 74 TSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVK 133
S + L+ + + + D+ + +DV + I A
Sbjct: 488 NSFIAA----------------LVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERG 531
Query: 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLL----------KHGKEIHPHHLKKDDLESD 183
++ F + E E+ + L++L K G++IH +K ++S+
Sbjct: 532 DEAVEFF------KTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHG-MDSE 584
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L+V N+LM Y KC +H F ++++ + +WN ITG Q+G G
Sbjct: 585 LIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWNTF------------ITGCAQHGLG 631
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
A++ + M + PN ++ G+L AC+
Sbjct: 632 REAIKMYEHMESVGVLPNEVTFVGLLNACSHA---------------------------- 663
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
L+D EGW++F+ M ++Y + P +E Y CMVDLL R
Sbjct: 664 --------------GLVD-----------EGWQFFKSMSRDYGLTPLLEHYACMVDLLGR 698
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
G F+ MP EP + C N +I AA LF EP ++G
Sbjct: 699 TGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVML 758
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
KVHSF+ GD H + +I L
Sbjct: 759 SNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTL 818
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
LY+ ++ GY+ K HSEKLA+A+GL+ T G P++++KNL
Sbjct: 819 QDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNL 878
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH+ K+VS K R+I + D RFHHF +G+CSCGD+W
Sbjct: 879 RICGDCHTFIKFVSHVTK----RDIDIRDGNRFHHFRNGSCSCGDFW 921
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 132/304 (43%), Gaps = 54/304 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MP+RN+ +WT M+ Y + + + ++F ++ EG V A + L+D
Sbjct: 179 LFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQD 238
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-CGRMEMA----SGEFEEKDFS---NLS 162
V + + ++ FE + + +L+++ + +++A G E +++ ++
Sbjct: 239 LGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIA 298
Query: 163 LLKHGKEIHPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
L HG I + D + +L+ A+C + A F +I +VSWNAM
Sbjct: 299 ALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAM 358
Query: 222 LAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ GY G +E I G+ Q G E AL+ + + M P+
Sbjct: 359 ITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSL 418
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
SL+ AC+ + + G+++H ++ Q + S+V N+LI M
Sbjct: 419 SSLTSSFLACSHIGALETGRQVHSLAVKAGCQFN----------------SYVCNALISM 462
Query: 323 YGRC 326
YG+C
Sbjct: 463 YGKC 466
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVGK---- 115
+F+ MP R++ +W SM+ Y G E+ LF + V A L + R+G+
Sbjct: 55 VFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDA 114
Query: 116 -DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
V+D M E N ++ +++ G + MA F+
Sbjct: 115 RRVFDGMP----ERNTVAWNAMVSCYVQNGDITMARRLFDAMP----------------- 153
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
D+ NS++ Y R + A F ++ Q++LV+W M++GY
Sbjct: 154 ------SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVR------- 200
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q+G G + F M P+ + + VL+A ++ + + + VL+ +
Sbjct: 201 --IEQHGKG---WDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFE 255
Query: 295 LSTGVGIALISI 306
+G +++++
Sbjct: 256 SDVVIGTSILNV 267
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
[Vitis vinifera]
Length = 1058
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 144/530 (27%), Positives = 219/530 (41%), Gaps = 181/530 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FEKMP+R+V SWT+++ Y G+ E ++LF ++ G+ K +++
Sbjct: 643 VFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGI-------KPNQL------- 688
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
V + CG NL +K G++ H + K
Sbjct: 689 --------------TVTSLLSACG---------------NLGAIKLGEQFHAL-IFKLGF 718
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
++ L V NSL+ Y KC Y + C F ++ + L++WNA+L G A Q
Sbjct: 719 DTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCA------------QN 765
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ A++ F +M + P+ +S GVL AC+
Sbjct: 766 GLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHA------------------------- 800
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
L+D EGW +F M ++Y + P + Y CMVDL
Sbjct: 801 -----------------GLVD-----------EGWAHFNSMTQKYGIMPLVYHYTCMVDL 832
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL-EPLSS-- 407
L RAG + ++ MP +P S C N ++ + A LF++ +P S+
Sbjct: 833 LGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATY 892
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
K+H F+ GD +H + +I
Sbjct: 893 VLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIY 952
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
L Y + GYM K+ HSEKLA+ FG++ST GSP+++I
Sbjct: 953 SALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQII 1012
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH+ K++SK R+II+ D RFHHF DG+CSCGDYW
Sbjct: 1013 KNLRICGDCHTFMKFMSKVTL----RKIIIRDGNRFHHFRDGSCSCGDYW 1058
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 150/355 (42%), Gaps = 60/355 (16%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEGVY----KACSELKD 110
+F++MPERN SW M+ Y + Y E ++F + D+ ++ A + L D
Sbjct: 317 LFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDD 376
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE----EKDFSNLSLLKH 166
+ + I +EG+ V +L+ + + G +++A FE ++S +++
Sbjct: 377 LELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAA 436
Query: 167 ----GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
G+ L + E + ++M YA+ ++ A F +I ++V+WNA++
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAII 496
Query: 223 AGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
AGY G +E I GF Q + ALE + ++ P+
Sbjct: 497 AGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDS 556
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
S + L+ACA + ++G+ IH ++ Q + S+V N LI MY
Sbjct: 557 SFTSALSACANIGDVEIGRVIHSLAIKTGCQFN----------------SYVMNGLISMY 600
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+CG ++ +G F ++ + + + ++ L+ DD +KMP
Sbjct: 601 AKCGNVE--DGSHVFRTIRVKDTV-----SWNSLISGLSENYMLDDARVVFEKMP 648
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 123/291 (42%), Gaps = 64/291 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+KMP +N SW +M+ + E + L L G AC+ + D
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ ++ I + N+ V ++ M+ KCG +E S
Sbjct: 571 VEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS-------------------- 610
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H+ + D + NSL+ ++ L A F K+ ++ +VSW A+++ Y
Sbjct: 611 ---HVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAY----- 662
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G GE AL+ F M+ ++PN ++++ +L+AC + KLG++ H
Sbjct: 663 -------VQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFH----- 710
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
ALI G T FV NSLI MY +CG +G+ FE M
Sbjct: 711 -----------ALIFKLGFDTFLFVGNSLITMYFKCGY---EDGFCVFEEM 747
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/339 (20%), Positives = 130/339 (38%), Gaps = 98/339 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F +M +R+V SW SM+ Y+ G +E LF D VGK++ +
Sbjct: 193 VFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----------------DAFVGKNIRTW 236
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
I +L + K GR+E A FE
Sbjct: 237 TI-------------LLTGYAKEGRIEEAREVFESMT----------------------- 260
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGGFRE---- 232
E +++ N+++ Y + LK A F ++ +K++ SWN+++ GY + RE
Sbjct: 261 ERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQ 320
Query: 233 -----------EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+G+ D A + F +M +T +P+ VL+A + +L
Sbjct: 321 MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELI 380
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+ ++ + VG A +++ Y R G++ + +FE M
Sbjct: 381 GSLRPIAIKTGYEGDVVVGSA----------------ILNAYTRNGSL--DLAMHFFETM 422
Query: 342 --KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+ EY+ + M+ A+ G+ DD + +++P
Sbjct: 423 PERNEYS-------WTTMIAAFAQCGRLDDAIQLYERVP 454
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 134/503 (26%), Positives = 210/503 (41%), Gaps = 144/503 (28%)
Query: 147 EMASGEFEEKDFSNLSLL---------KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
E+ F+ K F ++L + G++IH + +S++LV NSL+D YAKC
Sbjct: 301 ELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT-ADSEILVGNSLVDMYAKC 359
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ A F+ + + V W AM++ Y GF EE L+ F++M Q
Sbjct: 360 GKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEE------------GLQLFNKMRQAS 407
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI----------- 306
+ + + + +L A A + LGK++H ++++ + G AL+ +
Sbjct: 408 VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467
Query: 307 ---QGLGTGSFV-WNSLIDMYGRCGAIQKN------------------------------ 332
Q + + V WN++I Y + G +
Sbjct: 468 QTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 527
Query: 333 ---EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SS 383
EG +F M + Y ++P E Y +VD+L R+G+F++ M +MP +P S
Sbjct: 528 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 587
Query: 384 AEPC----NPDIAEHAARHLFELEPLSSG------------------------------- 408
C N ++A AA LF +E L
Sbjct: 588 LNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGV 647
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG----- 450
+ H F A D H + +I +K+ L ++++GY K +C
Sbjct: 648 KKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGY-KPDTSCALHNED 706
Query: 451 ----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSE+LA+AF LIST GSP+ V+KNLR C DCH+ K +SK RE
Sbjct: 707 EKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVG----RE 762
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I + D+ RFHHF DG CSCGD+W
Sbjct: 763 ITVRDSTRFHHFRDGFCSCGDFW 785
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/417 (22%), Positives = 172/417 (41%), Gaps = 77/417 (18%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----MFEKMPERNVFSWTSMMGMYNVL 83
+F++ P N V ++++ G LG +F+ M ER +WT ++G Y+ L
Sbjct: 69 LFEKMPHKNT------VSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQL 122
Query: 84 GYYEEIVNLFYLLIDEGV-------YKACSELKDHRVGKD---VYDYMISIKFEGNACVK 133
++E LF + G S H +G V +I + ++ V
Sbjct: 123 NQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVG 182
Query: 134 RPVLDMFIKCGRMEMASGEFEE----KDFS-------NLSL--LKHGKEIHPHHLKKDDL 180
++D + K R+++A F+E F+ N+ L + G++IH +K +
Sbjct: 183 NTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN-F 241
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
++ V+N+L+DFY+K + A F ++ ++ VS+N +++GYA
Sbjct: 242 VWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD------------ 289
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A + F + T + +L+ + +++G++IH +
Sbjct: 290 GKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI----------- 338
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ + V NSL+DMY +CG ++ EM+ A+ + M+
Sbjct: 339 -----VTTADSEILVGNSLVDMYAKCGKFEEA------EMIFTNLTHRSAVP-WTAMISA 386
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA--RHLFELEPLSSGK-VHSFI 414
+ G +++ L KM A D A A+ R + LS GK +HSFI
Sbjct: 387 YVQKGFYEEGLQLFNKMRQASVIA-----DQATFASLLRASASIASLSLGKQLHSFI 438
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 182 bits (462), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 149/520 (28%), Positives = 213/520 (40%), Gaps = 152/520 (29%)
Query: 147 EMASGEFEEKDFSNLSLLKH-----GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+M S E F+ S+LK GK +H +K L SDL V L+D YA+ +
Sbjct: 135 QMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLG-LGSDLYVRTGLVDVYARGGDVV 193
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYA-----------LGGFREE--------ITGFTQYGD 242
A F K+ ++ LVS ML Y+ G +E I G+ Q G
Sbjct: 194 CARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGV 253
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+L+ F RM+ PN +++ VL+AC Q+ + G+ IH Y+ IQ++ VG A
Sbjct: 254 PNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTA 313
Query: 303 LISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK--------------- 331
LI + GS WNS+I Y G Q
Sbjct: 314 LIDMYS-KCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG +F +M+ +Y +EP +E Y CMV+LL RAG ++
Sbjct: 373 TDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL 432
Query: 374 MKKMPFEPSSAEPC-------------NPDIAEHAARHLFELEPLSSG------------ 408
+K M +A+P N + E A+ L + + +SG
Sbjct: 433 VKNMTI---AADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAAT 489
Query: 409 -------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
KVH F+AG+ H +I L + S +
Sbjct: 490 GNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWL 549
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K GY + HSEKLA+AFGLIST PG+ ++++KNLR+C DCH
Sbjct: 550 KARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCH 609
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ K +S+ R+I+M D RFHHF DG CSCGDYW
Sbjct: 610 TVMKMISEITG----RKIVMRDRNRFHHFEDGLCSCGDYW 645
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 137/489 (28%), Positives = 208/489 (42%), Gaps = 137/489 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K ++ ++ G+ IH ++ S + V NSL+ YA C + A+ F K+ +
Sbjct: 126 FLLKAVGKMADVRLGETIHSVVIR-SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K LV+WN++ I GF + G E AL ++ M ++P+ ++ +L+AC
Sbjct: 185 KDLVAWNSV------------INGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSAC 232
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWN 317
A++ LGK H Y+++ + + L+ + + + S W
Sbjct: 233 AKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 318 SLI-----------------DMYGR-------------------CGAIQKNEGWRYFEMM 341
SLI +M + CG ++ EG+ YF M
Sbjct: 293 SLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVK--EGFEYFRRM 350
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDI 391
+EY +EP +E + CMVDLLARAGQ ++ KMP +P+ C + D+
Sbjct: 351 SEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDL 410
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
AE A + +LEP SG
Sbjct: 411 AELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGN 470
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGHSEK 454
+VH F+ GD SH I KL + ++ GY+ +I HSEK
Sbjct: 471 RVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEK 530
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
+A+AF LIST P+RV+KNL++C DCH K VSK REI++ D RFHHF +
Sbjct: 531 IAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKV----YNREIVVRDRSRFHHFKN 586
Query: 515 GACSCGDYW 523
G+CSC DYW
Sbjct: 587 GSCSCQDYW 595
>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
Length = 720
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 158/596 (26%), Positives = 233/596 (39%), Gaps = 201/596 (33%)
Query: 58 FLGMFEKMPERNVFSWTSMMGMY-------NVLGYYEEIVNLFY---LLIDEGVYKACSE 107
F GM E++ R+ SW SM+ Y L Y ++V+ + + V S
Sbjct: 196 FNGMGEEV--RDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSC 253
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR--------------------ME 147
++D G + I F N V ++DM+ KCG
Sbjct: 254 VEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNT 313
Query: 148 MASGEFEEKDFS------------------------------NLSLLKHGKEIHPHHLKK 177
M SG + K+ S NLS GK+ H +K
Sbjct: 314 MISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKS 373
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ + + VNN+L+ Y+KC L+ A F ++ Q + V+ N+++AGYA
Sbjct: 374 EIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYA----------- 422
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q+G G +L F +M+ + P +
Sbjct: 423 -QHGIGTESLNLFEQMLAASIAPTS----------------------------------- 446
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
I L+SI + G ++ EG +YF MMK + +EP E Y CM
Sbjct: 447 ---ITLVSI-------------LSACAHTGRVE--EGKKYFNMMKDIFGIEPEAEHYSCM 488
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSS 407
+DLL RAG+ + + MPF P SA C N ++AE AA +LEP ++
Sbjct: 489 IDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNA 548
Query: 408 -------------------------------------------GKVHSFIAGDTSHSLVH 424
+VH F+A D SH +
Sbjct: 549 VPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIK 608
Query: 425 KISEKLMRLYSEIKKIGYM-----------------KRIPACGHSEKLALAFGLISTSPG 467
+I L ++ ++K+ GY+ K I HSEKLA+AFGL+ T G
Sbjct: 609 EIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHG 668
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PL V+KNLR+CGDCH+ K++S + R+I + D YRFH F DG CSCGDYW
Sbjct: 669 EPLLVVKNLRICGDCHNAIKFMSAIAR----RKITVRDAYRFHCFEDGRCSCGDYW 720
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
HH E ++ N+L+ YAK + VAH F +I Q LVS+N ++ YA
Sbjct: 63 HHAFNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYA------ 116
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
GD +AL F M + + + + SGV+ AC G L +++H
Sbjct: 117 ------DRGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVG--LIRQLHSLAFSSG 168
Query: 293 IQLSTGVGIALIS--------------IQGLG---TGSFVWNSLIDMYG------RCGAI 329
V +L++ G+G WNS+I YG + A+
Sbjct: 169 FDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALAL 228
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
++ R FE+ + + + + C+ DL
Sbjct: 229 YRDMVHRGFEI--DMFTLASVLTTFSCVEDL 257
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 160/588 (27%), Positives = 236/588 (40%), Gaps = 194/588 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+FE+M RN WTSM+ Y E + L+ + ++G + AC+ELKD
Sbjct: 136 LFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKD 195
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLL--- 164
VG ++ ++ + + A + +++M+ KCG ++ A F+ +KD S L
Sbjct: 196 LGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFG 255
Query: 165 -----------------KHGKEIHPHHL----------KKDDLESDLLV----------- 186
G + P+ + + DLE+ V
Sbjct: 256 YVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGH 315
Query: 187 ----NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
NNSL+D ++KC + A F + K L+SWN+M+ G+AL G
Sbjct: 316 SVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGL------------ 363
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL F M TD+QP+ I+ GVL AC+
Sbjct: 364 GREALAQFRLMQTTDLQPDEITFIGVLTACSHA--------------------------- 396
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G +Q EG + F ++ Y + E Y CMVDLL
Sbjct: 397 ------------------------GLVQ--EGKKLFYEIEALYGVRLKSEHYGCMVDLLC 430
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG + F++ MP +P A C N ++ E AAR L +LEP + G
Sbjct: 431 RAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYIL 490
Query: 409 ---------------KV------------------------HSFIAGDTSHSLVHKISEK 429
KV HSF+AGD SH + +IS
Sbjct: 491 LSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIM 550
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L ++ ++K GY+ K HSEKLAL +GL+ + G + ++KN
Sbjct: 551 LRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKN 610
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K VSK +R+I + D RFHHF DG+CSC DYW
Sbjct: 611 LRVCSDCHTLIKLVSKI----YQRQITLRDRNRFHHFKDGSCSCRDYW 654
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 91/341 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMY-------NVLGYYEEIVNLFYLLIDEGVY----KACSELK 109
+F E +V +W SM+ + L Y E++ + D + K C+ L
Sbjct: 34 VFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLL 93
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MAS 150
+ +VGK ++ ++ + ++ +L+M+ CG ++ M S
Sbjct: 94 EFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 151 G---------------EFEEKDFS--------------NLSLLKHGKEIHPHHLKKDDLE 181
G + EE FS L L G ++H H +++ D++
Sbjct: 154 GYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH-IREMDMK 212
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
++ ++L++ YAKC LK A F K+ K + +W+A++ GY E
Sbjct: 213 ICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTE-------- 264
Query: 242 DGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL+ F + ++M+PN +++ V++ACAQ+ + G+ +H Y+ R S +
Sbjct: 265 ----ALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN 320
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
NSLIDM+ +CG I + R F+ M
Sbjct: 321 ----------------NSLIDMFSKCGDIDAAK--RIFDSM 343
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
K GK +H +K L SDL + +L++ YA C LK A F ++ ++ V W +M++
Sbjct: 95 FKVGKVLHGQVVKYM-LHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMIS 153
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY E AL + +M + P+ ++++ +++ACA++K +G +
Sbjct: 154 GYMKNHCPNE------------ALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMK 201
Query: 284 IHGYVLRHHIQLSTGVGIALISIQG----LGTGSFVWNSLID---------MYGRCGAIQ 330
+H ++ +++ +G AL+++ L T V++ L D ++G +
Sbjct: 202 LHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNR 261
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
E + F + NM P ++ A+ G +
Sbjct: 262 STEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 29/129 (22%)
Query: 203 AHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PN 261
A+ F+ ++ +++WN+ML F AL+ ++ M++ P+
Sbjct: 31 AYSVFAHTRELDVLTWNSML------------RAFVNSNMPRRALQSYTEMLERSRNVPD 78
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
+ +L CA + FK+GK +HG V+++ + + ++ +L++
Sbjct: 79 RFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLH----------------SDLYIETTLLN 122
Query: 322 MYGRCGAIQ 330
MY CG ++
Sbjct: 123 MYAACGDLK 131
>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Brachypodium distachyon]
Length = 1054
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 212/485 (43%), Gaps = 137/485 (28%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLV 216
S LS+L+ GK++H LK +E D V+N+LM YAK + FS + ++ V
Sbjct: 588 LSPLSVLELGKQVHAVVLKHGAIE-DNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAV 646
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN+M++GY G +E ++ M+ ++ + + S VL ACA V
Sbjct: 647 SWNSMISGYIYNGHLQE------------TMDCVWLMMHSNQMLDCCTFSIVLNACASVA 694
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWNSLID 321
+ G E+H + +R ++ V AL+ + F WNS+I
Sbjct: 695 ALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMIS 754
Query: 322 MYGRCG----------AIQKN-----------------------EGWRYFEMMKKEYNME 348
Y R G +Q+N G YFEMM+ ++ +
Sbjct: 755 GYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMME-DHGIL 813
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS-------------SAEPCNPDIAEHA 395
P +E Y C++DLL RAG+ ++ +MP +P+ S + D+ + A
Sbjct: 814 PHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEA 873
Query: 396 ARHLFELEP-------------LSSGK------------------------------VHS 412
+R L ELEP ++G+ VH+
Sbjct: 874 SRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHT 933
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALA 458
FIAGD SH +I EKL L +IK GY+ HSEKLA+A
Sbjct: 934 FIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVA 993
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L +S P+R++KNLR+CGDCH+ +Y+S+ R+II+ D+ RFHHF DG CS
Sbjct: 994 FVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVC----RQIILRDSIRFHHFEDGKCS 1049
Query: 519 CGDYW 523
CGDYW
Sbjct: 1050 CGDYW 1054
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+E+H H L+ ++ + ++N L++ YAKC + A F + + VSWN +
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTI-- 447
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
I+ Q G E A+ + M Q + P+ + L++CA ++ G++
Sbjct: 448 ----------ISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQ 497
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H ++ + L T V N+L+ MYG CGA ++E W F M +
Sbjct: 498 VHCDAVKWGLDLDTSVS----------------NALVKMYGDCGA--RSESWEIFNSMAE 539
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
++L LL G+++H +K L+ D V+N+L+ Y C + F+ + + +VSW
Sbjct: 487 ASLRLLTAGQQVHCDAVKWG-LDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSW 545
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N+++ + + ++E FS M+++ + PN ++ +L+A + +
Sbjct: 546 NSIMG-----------VMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVL 594
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALIS 305
+LGK++H VL+H V AL+S
Sbjct: 595 ELGKQVHAVVLKHGAIEDNAVDNALMS 621
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 99/256 (38%), Gaps = 41/256 (16%)
Query: 159 SNLSLLKHGKEIHPHHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
+ L L + G+E P L K L DL ++N L++ YAK L A F + +++
Sbjct: 62 AGLLLPRRGEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERN 121
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ---PNTISLSGVLAA 271
VSW +++GY L G +E A F M+ + P + VL A
Sbjct: 122 AVSWTCLVSGYVLSGITDE------------AFRVFKAMLWEGSEFSRPTPFTFGSVLRA 169
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
C G ++ + ++ H L+S + + V N+LI MYG C
Sbjct: 170 CQDA-----GPDLLAFAVQVH---------GLVSKTIYASNTTVCNALISMYGNCSVGLP 215
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI 391
+ + F+ + + ++ + A+ G T M + S+ E P+
Sbjct: 216 LQAQQVFDTTPVR-----DLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIE-LRPN- 268
Query: 392 AEHAARHLFELEPLSS 407
EH L LSS
Sbjct: 269 -EHTFGSLITATSLSS 283
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 120/315 (38%), Gaps = 86/315 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK--DHRVGKDVY 118
+F+ P R++ +W ++M +Y GY LF ++ + + EL+ +H G +
Sbjct: 221 VFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHD---DSAIELRPNEHTFGSLIT 277
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
+S G VLD +LK G
Sbjct: 278 ATSLSSCSSG-------VLDQVFA-------------------RVLKSGSS--------- 302
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG-F 237
SDL V ++L+ +A+ L A F +K+++ V+ N ++ G EE G F
Sbjct: 303 ---SDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF 359
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
D S ++ TD + LS V G G+E+HG++LR T
Sbjct: 360 MGTRD--------SFVVNTDTF--VVLLSAVAEFSIPEDGLMRGREVHGHILR------T 403
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM----KKEYNM------ 347
G+ I++ N L++MY +CGAI K R F ++ + +N
Sbjct: 404 GLIDLKIALS---------NGLVNMYAKCGAIDKAS--RVFRLLCARDRVSWNTIISVLD 452
Query: 348 -----EPAMEQYCCM 357
E AM YC M
Sbjct: 453 QNGFCEGAMMNYCMM 467
>gi|215713517|dbj|BAG94654.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222635568|gb|EEE65700.1| hypothetical protein OsJ_21333 [Oryza sativa Japonica Group]
Length = 382
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 130/432 (30%), Positives = 186/432 (43%), Gaps = 139/432 (32%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L L+ G+++H H LK D DL+++N+L+D Y KC L+ A F ++ Q+ ++SW
Sbjct: 23 TGLVTLEVGRQVHAHVLKYD---KDLILHNALLDMYCKCGSLQDADALFGRMPQRDVISW 79
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
+ M I+G Q G AL+ F M +P
Sbjct: 80 STM------------ISGLAQNGRSIEALKVFDMMKSEGPRP------------------ 109
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
+HI T VG+ ++ A +GW YF
Sbjct: 110 ------------NHI---TMVGV--------------------LFACSHAGLVEDGWYYF 134
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
M+K + ++P E CMVDLL RAG+ DD + F+ +M F+P S C N
Sbjct: 135 SSMEKLFGIQPEREHCNCMVDLLGRAGKLDDAVKFIHEMNFQPDSVIWRTLLGACRMHKN 194
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
D+A +AA+ + LEP G
Sbjct: 195 ADLAAYAAKEILRLEPDDQGARILLSNTYADLRQWADAEKSWKMMRDRGVKKDPGRSWIE 254
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GH 451
+VH FIAGD SH I ++L RL+S + +GY + H
Sbjct: 255 LGKQVHVFIAGDLSHPCSESIIQELSRLFSRVTNLGYTPQTEFVLQDLATEQKEDLLKYH 314
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFG ++ G P+R++KNLR+CGDCH+ K VSK+E + II+ D RFHH
Sbjct: 315 SEKLAIAFGTMNAMEGKPIRIMKNLRICGDCHAFAKLVSKSEG----KVIIIRDPVRFHH 370
Query: 512 FVDGACSCGDYW 523
F DG CSC DYW
Sbjct: 371 FQDGVCSCNDYW 382
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFL----GMFEKMPE 67
T + + C L LE+G QVHAH++ +L C L +F +MP+
Sbjct: 14 TLTSVLRACTGLVTLEVGRQVHAHVLKYDKDLILHNALLDMYCKCGSLQDADALFGRMPQ 73
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
R+V SW++M+ G E + +F ++ EG
Sbjct: 74 RDVISWSTMISGLAQNGRSIEALKVFDMMKSEG 106
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 158/624 (25%), Positives = 258/624 (41%), Gaps = 169/624 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
+ +L C +LE G ++H HL L ++ E T ++ +Y+V
Sbjct: 72 SISLFLHACISRRSLEHGRKLHLHL----------LRSQNRVLENPTLK-TKLITLYSVC 120
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL---DMF 140
G E +F ++ D + ++ ++I + N +L DM
Sbjct: 121 GRVNEARRVF-------------QIDDEKPPEEPVWVAMAIGYSRNGFSHEALLLYRDML 167
Query: 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
C + + K S+L G+ IH +K D E+D +VNN+L+ Y +
Sbjct: 168 SCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCF 227
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET--ALEFFSRMIQTDM 258
F ++ Q+++VSWN ++AG+A G G L F M + M
Sbjct: 228 DEVLKVFEEMPQRNVVSWNTLIAGFA--------------GQGRVFETLSAFRVMQREGM 273
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSF 314
+ I+L+ +L CAQV GKEIHG +L+ + +L+ + +G
Sbjct: 274 GFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEK 333
Query: 315 V-----------WNSLIDMYGRCGAIQK-------------------------------- 331
V WN+++ + G I +
Sbjct: 334 VFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGL 393
Query: 332 -NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------ 384
+EG R F + +++ ++P++E Y C+VD+L R+G+FD+ L+ + +P PS +
Sbjct: 394 TSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLL 453
Query: 385 EPC----NPDIAEHAARHLFELEPLSSG-------------------------------- 408
C N +AE A LFE+EP + G
Sbjct: 454 NSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKK 513
Query: 409 -----------KVHSFIAGDTSHSLVHKISEKLMRLYSE----IKKIGY----------- 442
K+H+F+AG +S + S + ++++E +K +GY
Sbjct: 514 DAGCSWIQIKHKIHTFVAGGSSD---FRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDI 570
Query: 443 ---MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
MK + C HSE+LA F LI+T G P+R+ KNLR+C DCHS K VSK + R
Sbjct: 571 NEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTR----R 626
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
I++ D RFHHF +G+CSC DYW
Sbjct: 627 LIVLRDTNRFHHFENGSCSCKDYW 650
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 161/607 (26%), Positives = 237/607 (39%), Gaps = 184/607 (30%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+L A + E M + +W +M+ Y G+YEE +L + G+
Sbjct: 223 DLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQL---------- 272
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
D Y Y I NA L G+++H +
Sbjct: 273 --DEYTYTSVISAASNA-------------------------------GLFNIGRQVHAY 299
Query: 174 HLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG------ 224
L+ S L VNN+L+ Y +C L A F K+ K LVSWNA+L+G
Sbjct: 300 VLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARR 359
Query: 225 --YALGGFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
A FRE I+G Q G GE L+ F++M ++P + +G +A+
Sbjct: 360 IEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIAS 419
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS-------IQGLGT--------GSFVW 316
C+ + G+++H +++ S VG ALI+ ++ T S W
Sbjct: 420 CSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSW 479
Query: 317 NSLIDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKK 343
N++I + G AIQ EG YF+ M+
Sbjct: 480 NAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRV 539
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
Y + P + Y ++DLL RAG F + N + MPFEP + C N ++
Sbjct: 540 CYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGI 599
Query: 394 HAARHLFELEPLSSGK-------------------------------------------V 410
AA L EL P G V
Sbjct: 600 QAADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMV 659
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F+ D H VH + L +L E++K+GY+ K HSEKLA
Sbjct: 660 HVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLA 719
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+ +G++ G+ +RV KNLR+CGDCH+ KY+SK +REII+ D RFHHF +G
Sbjct: 720 VVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVV----DREIIVRDRKRFHHFRNGE 775
Query: 517 CSCGDYW 523
CSC +YW
Sbjct: 776 CSCSNYW 782
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+ LS + +H H L L++N L+D Y K + A F KI + +V+
Sbjct: 6 LAQLSHTSFARAVHAHILTSGFKPFPLIINR-LIDHYCKSFNIPYARYLFDKIPKPDIVA 64
Query: 218 WNAMLAGYALGG---------------------FREEITGFTQYGDGETALEFFSRMIQT 256
ML+ Y+ G + IT F+ DG AL+ F +M +
Sbjct: 65 ATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRL 124
Query: 257 DMQPNTISLSGVLAACAQV 275
P+ + S VL A + +
Sbjct: 125 GFVPDPFTFSSVLGALSLI 143
>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g52630-like [Cucumis
sativus]
Length = 598
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 212/472 (44%), Gaps = 133/472 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H +K D+ V +SL+D YAKC + A F ++ ++++VSW+ M+ GYA
Sbjct: 145 GKSVHCLAVKTG-YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYA 203
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q DG AL F + + D+ N + S V+ C+ +LGK IHG
Sbjct: 204 ------------QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251
Query: 287 YVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGRCGAIQK 331
L+ S+ VG ALIS+ G+ G++ +WNS++ + Q+
Sbjct: 252 LCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQR 311
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+G YF +M+ +Y +EP E Y +V
Sbjct: 312 VFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFSLMR-DYGIEPETEHYASLV 370
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLL RAG+ + ++ +K+MP P+ + C + ++A A + E++ SSG
Sbjct: 371 DLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSG 430
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
KVH+F AGD SH+ +
Sbjct: 431 LHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVE 490
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I EKL L E++K GY+ K HSE+LA+AFGLI+ PG P+R
Sbjct: 491 IYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIR 550
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+CGDCH+ K++SK R +I+ DN RFH F DG CSCGDYW
Sbjct: 551 VMKNLRVCGDCHAAIKFMSKCCG----RVLIVRDNNRFHRFEDGKCSCGDYW 598
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F+ L+ G ++H H LK L++ LV+++L++ Y+K + + F + +K +
Sbjct: 35 FTRSRSLRQGLQLHAHILKFG-LQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTT 93
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W+++ I+ F Q AL+FF RM+ ++P+ AC ++
Sbjct: 94 WSSV------------ISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRR 141
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GK +H ++ G FV +SL+DMY +CG I
Sbjct: 142 SDVGKSVHCLAVK----------------TGYYCDVFVGSSLVDMYAKCGEI 177
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------- 60
D PD+ Y + C L ++G VH + G F+G
Sbjct: 120 DGVRPDDHI--YPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEI 177
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKAC 105
+F++MPERNV SW+ M+ Y L E + LF + E V + C
Sbjct: 178 GDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVC 237
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
S +GK ++ + + F+ ++ V ++ ++ KCG +E A F+E NL L
Sbjct: 238 SSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGL 295
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 150/584 (25%), Positives = 237/584 (40%), Gaps = 164/584 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH------RVG 114
+F+KMP R+ SW +M+ Y G + LF V+ + + +
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
K +D M E N ++ +++ +M++A FE N+S
Sbjct: 286 KTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW---------- 331
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
N+++ Y + + A F + Q+ VSW A++AGYA G EE
Sbjct: 332 -------------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE- 377
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL F + Q N + L+ CA + +LGK+IHG ++
Sbjct: 378 -----------ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426
Query: 295 LSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG------------ 327
VG AL+++ +G+ V WN+++ Y R G
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486
Query: 328 ---AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ +E G YF M K+Y + P + Y CM+DLL RAG+
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546
Query: 367 FDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-------- 408
++ + ++ MPF+P +A N ++ E AA +F++EP +SG
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606
Query: 409 -----------------------------------KVHSFIAGDTSHSLVHKISEKLMRL 433
K+H+F GD SH +I L L
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666
Query: 434 YSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++ GY+ HSEKLA+AFG+++ G P+RV+KNLR+C
Sbjct: 667 DLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVC 726
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K++SK R II+ D++RFHHF +G CSCGDYW
Sbjct: 727 EDCHSAIKHISKIVG----RLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 40/216 (18%)
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI 391
+ G YF M +EY++ P + Y CM+DLL R + ++ +S N ++
Sbjct: 781 DTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEG-------ALLGASRIHGNTEL 833
Query: 392 AEHAARHLFELEPLSSG----------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
E AA+ F++ P +SG KV + + + +H S L L E + IG
Sbjct: 834 GEKAAQMFFKMGPQNSGISKMRDVGVQKVPGYSWFEVQNK-IHTFSVGLF-LSRERENIG 891
Query: 442 YMKRIPACGH-------------SEKLALAFGLISTSPGSPLRVI-KNLRMCGDCHSPTK 487
+++ + SE LA A G+++ G P RV+ K + +C DC S K
Sbjct: 892 FLEELDLKMREREEEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIK 951
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++SK R I + D++RF+ + CSCG+YW
Sbjct: 952 HMSKIVG----RLITLRDSHRFNESI---CSCGEYW 980
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 148/370 (40%), Gaps = 85/370 (22%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ +++ + +L L L F++MPER++FSW M+ Y
Sbjct: 71 VFNTMPRRSSVSYNAMISGYLRNSKFNLARNL--FDQMPERDLFSWNVMLTGYVRNCRLG 128
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYMISIKFEGNACVKRPVLDMFI 141
+ LF L+ ++ V S L + ++V+D M E N+ +L ++
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYV 184
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
GR+E A FE K + DL+ N LM + + + L
Sbjct: 185 HNGRIEEACLLFESKS-----------------------DWDLISWNCLMGGFVRKKKLG 221
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGG--------FREE-----------ITGFTQYGD 242
A F K+ + +SWN M++GYA GG F E ++G+ Q G
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A FF M + N +S + ++A Q K + +E+ + +I
Sbjct: 282 LDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS-------- 329
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
WN++I YG+ G I + ++F+MM + + + ++ A
Sbjct: 330 ------------SWNTMITGYGQIGDIAQAR--KFFDMMPQRDCV-----SWAAIIAGYA 370
Query: 363 RAGQFDDTLN 372
++G +++ LN
Sbjct: 371 QSGHYEEALN 380
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 156/588 (26%), Positives = 226/588 (38%), Gaps = 199/588 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLG----MFE 63
V+ F C L LG Q H ++ CG E+ C G +F+
Sbjct: 113 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 172
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
M RN SW SM+ Y G EE + L R G++ D+M+S
Sbjct: 173 GMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--------------LGARRSGEEPTDFMVS 218
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
C + L L G+ +H ++ ++++
Sbjct: 219 --------------SALTTC---------------AGLLGLHLGRALHAVAVRSC-IDAN 248
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V ++L+D Y KC ++ A F + Q++LV+WNAM+ GYA GD
Sbjct: 249 IFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYA------------HIGDA 296
Query: 244 ETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ AL F MI++ + PN I+L V+ +C++
Sbjct: 297 QNALLVFDDMIRSGETAPNYITLVNVITSCSR---------------------------- 328
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G + K +G+ FE M++ + +EP E Y C+VDLL
Sbjct: 329 ------------------------GGLTK-DGYELFETMRERFGIEPRTEHYACVVDLLG 363
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK--- 409
RAG + ++ MP PS + C ++ AA LFEL+P SG
Sbjct: 364 RAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVL 423
Query: 410 ----------------------------------------VHSFIAGDTSHSLVHKISEK 429
VH F A DT H + ++I
Sbjct: 424 LSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQAL 483
Query: 430 LMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKN 475
L +L +++ GYM HSEKLALAFGLI PG P+R++KN
Sbjct: 484 LSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKN 543
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH K++S REII+ DN RFHHF CSCGDYW
Sbjct: 544 LRICVDCHRAFKFISGIVG----REIIVRDNNRFHHFKQYQCSCGDYW 587
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +IH ++ L D V+ + +D Y K LK+A F ++ +++V+WNA++
Sbjct: 30 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 89
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
L G E +E + + + PN +S ACA LG++ HG
Sbjct: 90 LDGRPLE------------TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 137
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+V++ ++ V NS++D YG+C K F+ M +
Sbjct: 138 FVVKCGFEMDVS----------------VLNSMVDFYGKCRCAGKARA--VFDGMGVRNS 179
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCN 388
+ +C MV A+ G ++ F + S EP +
Sbjct: 180 V-----SWCSMVAAYAQNGAEEEA--FAAYLGARRSGEEPTD 214
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 150/584 (25%), Positives = 237/584 (40%), Gaps = 164/584 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH------RVG 114
+F+KMP R+ SW +M+ Y G + LF V+ + + +
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
K +D M E N ++ +++ +M++A FE N+S
Sbjct: 286 KTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSW---------- 331
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
N+++ Y + + A F + Q+ VSW A++AGYA G EE
Sbjct: 332 -------------NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE- 377
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL F + Q N + L+ CA + +LGK+IHG ++
Sbjct: 378 -----------ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYG 426
Query: 295 LSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCG------------ 327
VG AL+++ +G+ V WN+++ Y R G
Sbjct: 427 TGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESM 486
Query: 328 ---AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ +E G YF M K+Y + P + Y CM+DLL RAG+
Sbjct: 487 KTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGR 546
Query: 367 FDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-------- 408
++ + ++ MPF+P +A N ++ E AA +F++EP +SG
Sbjct: 547 LEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNL 606
Query: 409 -----------------------------------KVHSFIAGDTSHSLVHKISEKLMRL 433
K+H+F GD SH +I L L
Sbjct: 607 YAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEEL 666
Query: 434 YSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++ GY+ HSEKLA+AFG+++ G P+RV+KNLR+C
Sbjct: 667 DLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVC 726
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K++SK R II+ D++RFHHF +G CSCGDYW
Sbjct: 727 EDCHSAIKHISKIVG----RLIILRDSHRFHHFNEGFCSCGDYW 766
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 148/370 (40%), Gaps = 85/370 (22%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ +++ + +L L L F++MPER++FSW M+ Y
Sbjct: 71 VFNTMPRRSSVSYNAMISGYLRNSKFNLARNL--FDQMPERDLFSWNVMLTGYVRNCRLG 128
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYMISIKFEGNACVKRPVLDMFI 141
+ LF L+ ++ V S L + ++V+D M E N+ +L ++
Sbjct: 129 DARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNGLLAAYV 184
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
GR+E A FE K + DL+ N LM + + + L
Sbjct: 185 HNGRIEEACLLFESKS-----------------------DWDLISWNCLMGGFVRKKKLG 221
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGG--------FREE-----------ITGFTQYGD 242
A F K+ + +SWN M++GYA GG F E ++G+ Q G
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ A FF M + N +S + ++A Q K + +E+ + +I
Sbjct: 282 LDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS-------- 329
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
WN++I YG+ G I + ++F+MM + + + ++ A
Sbjct: 330 ------------SWNTMITGYGQIGDIAQAR--KFFDMMPQRDCV-----SWAAIIAGYA 370
Query: 363 RAGQFDDTLN 372
++G +++ LN
Sbjct: 371 QSGHYEEALN 380
>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Cucumis sativus]
Length = 598
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 143/472 (30%), Positives = 212/472 (44%), Gaps = 133/472 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H +K D+ V +SL+D YAKC + A F ++ ++++VSW+ M+ GYA
Sbjct: 145 GKSVHCLAVKTG-YYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYA 203
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
Q DG AL F + + D+ N + S V+ C+ +LGK IHG
Sbjct: 204 ------------QLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHG 251
Query: 287 YVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGRCGAIQK 331
L+ S+ VG ALIS+ G+ G++ +WNS++ + Q+
Sbjct: 252 LCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQR 311
Query: 332 ---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMV 358
+G YF +M+ +Y +EP E Y +V
Sbjct: 312 VFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFSLMR-DYGIEPETEHYASLV 370
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLL RAG+ + ++ +K+MP P+ + C + ++A A + E++ SSG
Sbjct: 371 DLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSG 430
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
KVH+F AGD SH+ +
Sbjct: 431 LHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVE 490
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I EKL L E++K GY+ K HSE+LA+AFGLI+ PG P+R
Sbjct: 491 IYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIR 550
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+CGDCH+ K++SK R +I+ DN RFH F DG CSCGDYW
Sbjct: 551 VMKNLRVCGDCHAAIKFMSKCCG----RVLIVRDNNRFHRFEDGKCSCGDYW 598
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
F+ L+ G ++H H LK L++ LV+++L++ Y+K + + F + +K +
Sbjct: 35 FTRSRSLRQGLQLHAHILKFG-LQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTT 93
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W+++ I+ F Q AL+FF RM+ ++P+ AC ++
Sbjct: 94 WSSV------------ISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRR 141
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GK +H ++ G FV +SL+DMY +CG I
Sbjct: 142 SDVGKSVHCLAVK----------------TGYYCDVFVGSSLVDMYAKCGEI 177
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------- 60
D PD+ Y + C L ++G VH + G F+G
Sbjct: 120 DGVRPDDHI--YPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEI 177
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKAC 105
+F++MPERNV SW+ M+ Y L E + LF + E V + C
Sbjct: 178 GDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSSVIRVC 237
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
S +GK ++ + + F+ ++ V ++ ++ KCG +E A F+E NL L
Sbjct: 238 SSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGL 295
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 134/432 (31%), Positives = 191/432 (44%), Gaps = 137/432 (31%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
++++ L+ GK++H + K E D+ V+N L+D Y KC
Sbjct: 9 ASVAALEQGKQVHAD-IIKIGFELDVSVSNGLVDMYGKC--------------------- 46
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
G E A E FS++ ++P+ S + +++ AQ
Sbjct: 47 ----------------------GRIEDAQEVFSKL----LEPDVASWNAMISGLAQ---H 77
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
GKE VL L TGV I+ ++ + G A +EG YF
Sbjct: 78 GCGKEA---VLLFEQMLQTGVKPNQITF------------VVVLSGCSHAGLVDEGRNYF 122
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
+ M +++ + P E Y CMVDL RAG D+ LNF+ +MP EP+++ C N
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++AE A L EL P + G
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGH 451
KVH FI GD+SH + +I E L L ++K GY+ K H
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHH 302
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFG+IST PG+ +RV+KNLR+CGDCH+ TK++S R REI++ D +RFHH
Sbjct: 303 SEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFIS----RIVSREIVLRDTHRFHH 358
Query: 512 FVDGACSCGDYW 523
F DG CSCGDYW
Sbjct: 359 FKDGQCSCGDYW 370
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324
++G+L ACA V + GK++H +++ +L V N L+DMYG
Sbjct: 1 MAGILRACASVAALEQGKQVHADIIKIGFELDVSVS----------------NGLVDMYG 44
Query: 325 RCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+CG I+ + E+ K +EP + + M+ LA+ G + + ++M
Sbjct: 45 KCGRIEDAQ-----EVFSKL--LEPDVASWNAMISGLAQHGCGKEAVLLFEQM 90
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 150/588 (25%), Positives = 238/588 (40%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+FE +P +V W+ ++ Y E+ +F ++ GV +AC+ +
Sbjct: 308 VFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAF 367
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
+G+ +++ +I + +E V ++D++ KC M
Sbjct: 368 LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVG 427
Query: 147 -------EMASGEFEE-----------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
E A F+E + +N + +KH +IH ++K +
Sbjct: 428 YCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSL-IEKSTFNN 486
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D +V NSL+D YAKC ++ A F I Q +VSWNA+++GYAL +G
Sbjct: 487 DTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYAL------------HGR 534
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
ALE F+RM ++D +PN ++ +L+ C STG+
Sbjct: 535 ATDALELFNRMNKSDTKPNDVTFVALLSVCG----------------------STGL--- 569
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
N+G F M ++ ++P+M+ Y C+V LL
Sbjct: 570 ----------------------------VNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLG 601
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------- 404
RAG+ +D L F+ +P PS C N + + +A + E+EP
Sbjct: 602 RAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVL 661
Query: 405 LSS-----------------------------------GKVHSFIAGDTSHSLVHKISEK 429
LS+ G+VH+F G H + I+
Sbjct: 662 LSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAM 721
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
L L + + GY+ I HSE+LALA+GL T PG P+R++KN
Sbjct: 722 LEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKN 781
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR C DCH+ K +SK +REI++ D RFHHF +G CSCGDYW
Sbjct: 782 LRSCLDCHTVFKVISKIV----QREIVVRDINRFHHFDEGICSCGDYW 825
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 89/375 (23%), Positives = 147/375 (39%), Gaps = 94/375 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ + ++ +WT+M+ Y+ E+ +N F + G V KA L
Sbjct: 207 VFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSS 266
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+GK ++ + + V +LDM+ KCG +E A FE
Sbjct: 267 AVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISR 326
Query: 155 -------EKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
E+ F +N++ L G++IH + + K ES
Sbjct: 327 YAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIH-NLVIKLGYES 385
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L V N+LMD YAKCR ++ + F ++ + VSWN ++ GY GF E+
Sbjct: 386 ELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAED--------- 436
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M + ++ S VL ACA K +IH +
Sbjct: 437 ---ALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIH----------------S 477
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
LI + V NSLID Y +CG I+ + + FE + ++ + + ++ A
Sbjct: 478 LIEKSTFNNDTIVCNSLIDTYAKCGCIR--DALKVFESI-----IQCDVVSWNAIISGYA 530
Query: 363 RAGQFDDTLNFMKKM 377
G+ D L +M
Sbjct: 531 LHGRATDALELFNRM 545
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 152/385 (39%), Gaps = 119/385 (30%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCG-------------VELCAFLG-------MFEKM 65
A + QRC + G VHA ++ G + L A LG +F+ M
Sbjct: 51 ARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGM 110
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PERN+ S+ +++ Y + G +EE LF L EG +H V + ++++
Sbjct: 111 PERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREG------HEVNHFVLTTILKVLVAMD 164
Query: 126 FEG----------------NACVKRPVLDMFIKCGRMEMASGEFE--------------- 154
G NA V ++D + CG + A F+
Sbjct: 165 APGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVS 224
Query: 155 ---EKD--------FSNL-------------SLLKH---------GKEIHPHHLKKDDLE 181
E D FS + S+LK GK IH +K +
Sbjct: 225 CYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTL-CD 283
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
++ V +L+D YAKC Y++ A F I ++ W+ +++ YA Q
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYA------------QSY 331
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
E A E F RM+++ + PN SLSGVL ACA V LG++IH V++
Sbjct: 332 QNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIK----------- 380
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRC 326
G + FV N+L+D+Y +C
Sbjct: 381 -----LGYESELFVGNALMDVYAKC 400
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 165 KHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+ G+ +H +++ + + D N L++ YAK L A F + ++++VS+ ++
Sbjct: 64 RAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQ 123
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYAL G EE G F R+ + + N L+ +L + L
Sbjct: 124 GYALRGGFEEAAG------------LFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCC 171
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
IH + G +FV +SLID Y CGA+
Sbjct: 172 IHACACK----------------LGHDRNAFVGSSLIDAYSLCGAVS 202
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 162/633 (25%), Positives = 254/633 (40%), Gaps = 203/633 (32%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKMPERN 69
+ + P+L NL+ QVHAH+IV G + L G +F +P +
Sbjct: 97 LLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 153
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
F + S++ + + G+ + V + ++ G ++ Y + IK
Sbjct: 154 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN------------YTFTSVIK---- 197
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189
AC ++LS L+ GKEIH H + SD+ V +
Sbjct: 198 AC---------------------------ADLSALRLGKEIHSH-VMVCGYGSDMYVQAA 229
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L+ YAK +KVA F + Q+ +++WN++++GY G +E G
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL------------ 277
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-QG 308
F M+++ QP++ ++ +L++C+Q+ G +H Y + L+ +G +LI++
Sbjct: 278 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 337
Query: 309 LGTGS--------------FVWNSLIDMYGRCGAIQK----------------------- 331
G S W ++I YG G ++
Sbjct: 338 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 397
Query: 332 ----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFE 380
++G R F MK+ Y + P +E CMVD+ RAG +D F+KK +P E
Sbjct: 398 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 457
Query: 381 PSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------------- 408
P A C N D+ A H+ +EP + G
Sbjct: 458 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 517
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
K + F GD SH + I L L + GY +P
Sbjct: 518 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGY---VP 574
Query: 448 ACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
A HSEKLALAFGL+ T+ G +R++KNLR+C DCHS K++S
Sbjct: 575 APESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHIS 634
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D +RFHHF DG+CSC DYW
Sbjct: 635 IIA----DREIIVRDKFRFHHFKDGSCSCLDYW 663
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------VELC 56
+ L + M + + T+ + + C L+ L LG ++H+H++VCG L
Sbjct: 172 DTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALI 231
Query: 57 AFLG----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
A +F+ MP+R + +W S++ Y+ G +E + LF+L+++ G
Sbjct: 232 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSA 291
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE-- 154
+ +CS+L G ++DY F+ N + +++M+ +CG + A F+
Sbjct: 292 TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSM 351
Query: 155 -EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV-----NNSLMDFYAKCRYLKVAHCKFS 208
E++ + + G +H + + +L +++ NN + F A ++ C S
Sbjct: 352 KERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNN--ITFVA-----VLSACAHS 404
Query: 209 KIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
+ +++M Y L E + F + G A +F + I +P
Sbjct: 405 GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPK--EPGPAV 462
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLR-------HHIQLSTGVGIA 302
+ +L AC + F LG ++ +VL H++ LS +A
Sbjct: 463 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALA 507
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 159/608 (26%), Positives = 241/608 (39%), Gaps = 208/608 (34%)
Query: 9 LLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV---------------- 50
L + M TN PDE T+ + C + ++ELG QVH+ +
Sbjct: 183 LFKEMMRTNVRPDEGTLVS--VVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNA 240
Query: 51 -------CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103
CG AF G+FE + ++V SW +++G Y Y+E + LF ++ G
Sbjct: 241 LIDLYSKCGDVETAF-GLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSG--- 296
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
DV +L + C ++L
Sbjct: 297 --------ECPNDV-----------------TLLSVLPAC---------------AHLGA 316
Query: 164 LKHGKEIHPHHLKK-DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+ G+ IH + KK + ++ + SL+D YAKC ++ AH F+ + + L SWNAM+
Sbjct: 317 IDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMI 376
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
G+A+ +G A + FSRM ++P+ I+ G+L+AC+
Sbjct: 377 FGFAM------------HGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSH-------- 416
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+ L+D+ G + F+ M
Sbjct: 417 ----------------------------------SGLLDL-----------GRQIFKSMT 431
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIA 392
++YN+ P +E Y CM+DLL +G F + + MP EP C N ++A
Sbjct: 432 QDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELA 491
Query: 393 EHAARHLFELEPLSSGK------------------------------------------- 409
E A+ L ++EP +SG
Sbjct: 492 ESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSV 551
Query: 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKL 455
VH FI GD H +I L + ++++ G+ K HSEKL
Sbjct: 552 VHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKL 611
Query: 456 ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
A+AFGLIST PG+ L ++KNLR+C +CH TK +SK K REI+ D RFHHF DG
Sbjct: 612 AIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYK----REIVARDRTRFHHFRDG 667
Query: 516 ACSCGDYW 523
CSC DYW
Sbjct: 668 VCSCCDYW 675
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 125/286 (43%), Gaps = 57/286 (19%)
Query: 59 LGMFEKMPERNVFSWTSMMGMY-------NVLGYYEEIVNLFYLLIDEG---VYKACSEL 108
+ +FE + E N+ W +M+ + + L Y +V+L +L + K+C++
Sbjct: 18 ISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKS 77
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K G+ ++ ++ + + V ++ M+ + G +E A F+
Sbjct: 78 KAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASS----------- 126
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
D++ +L+ YA + A F +I ++ +VSWNAM
Sbjct: 127 ------------HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAM------- 167
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
ITG+ + G E ALE F M++T+++P+ +L V++ACAQ +LG+++H +V
Sbjct: 168 -----ITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWV 222
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
G + + N+LID+Y +CG ++ G
Sbjct: 223 ------------DDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 137/334 (41%), Gaps = 71/334 (21%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
++ + + C K E G Q+HA ++ G L + + TS++ MY
Sbjct: 66 SFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGL-------------DRYVHTSLISMYARN 112
Query: 84 GYYEEIVNLFYLLIDEGVYKACSEL-------KDHRVGKDVYDYMISIKFEGNACVKRPV 136
G E+ +F V +C+ L D R + V+D + E + +
Sbjct: 113 GGLEDARKVFDASSHRDVV-SCTALITGYASRGDFRSARKVFDEIT----ERDVVSWNAM 167
Query: 137 LDMFIKCGRMEMASGEFEEKDFSNL-----------------SLLKHGKEIHP---HHLK 176
+ +++ GR E A F+E +N+ ++ G+++H
Sbjct: 168 ITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDD 227
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
S L + N+L+D Y+KC ++ A F + K +VSWN ++ GY +E
Sbjct: 228 DHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKE--- 284
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
AL F M+++ PN ++L VL ACA + +G+ IH Y+ +
Sbjct: 285 ---------ALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDK------ 329
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
++G+ + + SLIDMY +CG I+
Sbjct: 330 --------KLKGVTNETSLRTSLIDMYAKCGDIE 355
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 142/588 (24%), Positives = 237/588 (40%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
++E M +R++ SW + + + G Y+ + +FY +++EG + +CS L D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF--------- 158
G+ V+ ++I + + N V ++DM+ KC +E A F +D
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591
Query: 159 ------------------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
S+L+ L+ G+++H K + S
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV-S 650
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V ++L+D YAKC ++ A F + ++ ++WN ++ GYA Q G
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA------------QNGQ 698
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL F M+ + P+ ++ +G+L+AC+ + GKE
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE------------------- 739
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+F M +++ + P ++ CMVD+L
Sbjct: 740 ----------------------------------HFNSMYRDFGISPTVDHCACMVDILG 765
Query: 363 RAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP-------- 404
R G+FD+ +F++KM +S N + E AA LFEL+P
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825
Query: 405 -----------------------------------LSSGKVHSFIAGDTSHSLVHKISEK 429
++G+VH+F++ D SH + +I K
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLK 885
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
L L E+ I Y+ + HSE+LAL F LISTS +R+ KN
Sbjct: 886 LDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKN 945
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH K++S +EI++ D RFHHF +GACSC D+W
Sbjct: 946 LRICRDCHDVMKHISSITN----QEIVVRDVRRFHHFKNGACSCNDFW 989
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 131/317 (41%), Gaps = 79/317 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+ KMP+R+V SWT+++ G+ + + LF + +EG+ + +
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP------------NEFTL 216
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+K AC LD+ GK++H K L
Sbjct: 217 ATGLK----ACSLCMALDL---------------------------GKQMHAQAFKLG-L 244
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
DL V ++L+D YAKC +++A F + +++ V+WN +L GYA Q
Sbjct: 245 LLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA------------QR 292
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
GD L+ F M++ D++ N +L+ VL CA K K G+ IH +++
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC--------- 343
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G F+ L+DMY +CG G F+ +KK P + + ++
Sbjct: 344 -------GYEGNEFIGCGLVDMYSKCGLAIDAIG--VFKTIKK-----PDIVVWSALITC 389
Query: 361 LARAGQFDDTLNFMKKM 377
L + GQ ++++ M
Sbjct: 390 LDQQGQSEESIKLFHLM 406
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 93/441 (21%), Positives = 167/441 (37%), Gaps = 118/441 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E T+ L + C L+LG Q+HA G+ L F+G
Sbjct: 211 PNEFTLATGL--KACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS 268
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELK 109
MF MPE+N +W ++ Y G ++ LF +++ V K C+ K
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
+ + G+ ++ +I +EGN + ++DM+ KCG A G F+
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388
Query: 156 ------------KDF----------------------SNLSLLKHGKEIHPHHLKKDDLE 181
K F +N L++G+ IH + K E
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC-VWKYGFE 447
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V+N+L+ Y K + + + + L+SWNA L+G G +
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR-------- 499
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
L F M++ PN + +L +C+ + G+++H +++++
Sbjct: 500 ----PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--------- 546
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVD 359
L +FV +LIDMY +C Y E +N + + ++
Sbjct: 547 -------LDDNNFVCTALIDMYAKC---------MYLEDADVAFNRLSVRDLFTWTVIIT 590
Query: 360 LLARAGQFDDTLNFMKKMPFE 380
A+ Q + LN+ ++M E
Sbjct: 591 NYAQTNQGEKALNYFRQMQQE 611
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
KD + D + SL++ YAKCRY A +K+ + +VSW A++ G GF +
Sbjct: 140 KDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFAND--- 196
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
++ F M + PN +L+ L AC+ LGK++H +
Sbjct: 197 ---------SIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFK------ 241
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GL FV ++L+D+Y +CG I+
Sbjct: 242 ----------LGLLLDLFVGSALVDLYAKCGEIE 265
>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
Length = 620
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 163/652 (25%), Positives = 264/652 (40%), Gaps = 181/652 (27%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG------- 60
T PD+ V + + C L+ G Q+H+ ++ G+ L G
Sbjct: 6 TRPDK--VVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPC 63
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI--DEGVYKACSELKDHRVG- 114
+F+ M R+V SWT+M+ +Y G + + +++F + D+ + A + + VG
Sbjct: 64 AEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNA---VINASVGN 120
Query: 115 ---KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+D + ++ EG + +L + CG +E LK ++IH
Sbjct: 121 SKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLED---------------LKLARQIH 165
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ V NS+++ YA+C L F +++K LV+W+ MLA YA
Sbjct: 166 ARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQ---- 221
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
++ G G A +FF M ++P ++ L ACA + + G+ +H
Sbjct: 222 ------SKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAAS 275
Query: 292 -HIQLSTGVGIALISIQG-LGTGS--------------FVWNSLIDMYGRCG-------A 328
++ S +G +I++ G G+ S WNSLI Y G +
Sbjct: 276 GFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSS 335
Query: 329 IQK--------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+Q+ G +F +++ +EP+ Q C+VDLLA
Sbjct: 336 LQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLA 395
Query: 363 RAGQFD--------------DTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSG 408
R G D DT+ +M + S +P A +FELEP SG
Sbjct: 396 RKGFLDAAEELILASPACQADTIAWMTLLAACKSYG---DPQRGIRCAERVFELEPQHSG 452
Query: 409 K-------------------------------------------VHSFIAGDTSHSLVHK 425
VH FI+G++ H + +
Sbjct: 453 SFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIRE 512
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I E+L +L +++ GY+ K HSE+LA+ FGL+ST PG +R
Sbjct: 513 ICEELEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIR 572
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V+KNLR+C DCH+ TK +S REI++ D+ RFHHF G CSCGD+W
Sbjct: 573 VVKNLRVCSDCHAATKIISSVVG----REIVVRDSSRFHHFKHGQCSCGDFW 620
>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
Length = 879
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 237/589 (40%), Gaps = 195/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F M R+V SW +++ + + E ++L +L+ +GV C+ +
Sbjct: 360 VFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEA 419
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
G+ ++ +++ + + + +LDM+ C + AS F +D
Sbjct: 420 LAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITA 479
Query: 158 --------------FSNLSL----------------------LKHGKEIHPHHLKKDDLE 181
F + L L GK +H +++ LE
Sbjct: 480 YAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDR-IRETGLE 538
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S++ V N++++ YAK L +A F K+ ++SWN M I+ F Q+G
Sbjct: 539 SNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGM------------ISAFAQHG 586
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ L FF RM PN ++ V++AC+ HG +++ +QL
Sbjct: 587 HADQVLRFFRRMNHEGKLPNDVTFVSVVSACS-----------HGGLVKDGVQL------ 629
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+ ++ + P E Y CMVDL+
Sbjct: 630 -----------------------------------FVSLLHDFPTISPRAEHYYCMVDLI 654
Query: 362 ARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG--- 408
ARAG+ D F+ P +P A + D+ A +A HL EL P S
Sbjct: 655 ARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYV 714
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+VH F GDT+++ +I E
Sbjct: 715 VLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILE 774
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L RL E+ K GY K+ HSEKLA+AFGLIST+PG+ LR+IK
Sbjct: 775 ELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIK 834
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ TK++SK REI++ D++RFHHF +G CSCGDYW
Sbjct: 835 NLRVCGDCHTATKFISKITG----REIVVRDSHRFHHFDNGTCSCGDYW 879
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 149/376 (39%), Gaps = 99/376 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + +L+LG +VHA + ++ F+G F++MP
Sbjct: 1 YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
++ +W ++ + +G E+ ++LF S++
Sbjct: 61 VQDALTWARLIRAHGQIGDSEQALHLFR----------------------------SMQL 92
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
EG A V R + + C ++ LL+ G+ IH L+ +ESD V
Sbjct: 93 EGVAPVNRNFVAVLGACS--------------ADPELLEEGRRIHGV-LRGTAMESDHYV 137
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+ +L+ Y KC ++ A F I+ K +V WNAM IT + Q E A
Sbjct: 138 STTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAM------------ITAYAQQDHHEQA 185
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV-LRHHIQLSTGVGIALIS 305
++ F M+ ++ I+ GVL AC+++K ++ K + V R H L
Sbjct: 186 IQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLH--------- 236
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-EQYCCMVDLLARA 364
SF +L++ YG CG ++ + +R F + E + AM QY +
Sbjct: 237 -----DSSFA-TALVNFYGSCGDLE--QAFRAFSRHRLELILATAMITQY-------TQR 281
Query: 365 GQFDDTLNFMKKMPFE 380
++D+ L K M E
Sbjct: 282 ERWDEALELFKVMLLE 297
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 102/347 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ + + V W +M+ Y ++E+ + +FY ++ EGV ACS+LKD
Sbjct: 157 VFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKD 216
Query: 111 HRVGKDV--------YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------- 153
V K V +D++ F +++ + CG +E A F
Sbjct: 217 LEVAKLVKLCVEEREHDHLHDSSF------ATALVNFYGSCGDLEQAFRAFSRHRLELIL 270
Query: 154 ----------EEKDFSNLSLLK----------------------------HGKEIHPHHL 175
E+ L L K G+ IH +
Sbjct: 271 ATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGF-M 329
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
++ + + N+L++ Y KC L+ A F ++ + ++SWN ++A +
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHG--------- 380
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Q+ AL M ++ + IS L CA + G+ IH +++
Sbjct: 381 ---QHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVE----- 432
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
G+ + N+++DMYG C + ++ R F MK
Sbjct: 433 -----------SGIKADVMLDNAILDMYGSCKST--DDASRVFRAMK 466
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 168/696 (24%), Positives = 281/696 (40%), Gaps = 202/696 (29%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
+ Y + RC + +L +H H++ G + F+ +F+
Sbjct: 78 SAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFD 137
Query: 64 KMPERNVFSWTSMMGMYNV-------LGYYEEIVNLFYLLID---EGVYKACSELKDHRV 113
+MPE+NV +WT+++ Y + L + E++ L D G+ AC + +
Sbjct: 138 EMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDL 197
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MASGEFE 154
GK V+ Y I + + ++ K G +E M S E
Sbjct: 198 GKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAE 257
Query: 155 EKDFS----NLSLLKHGKEIHPHHLKKDDLES-------------------------DLL 185
+++++ NL L E+ P+ + S +L
Sbjct: 258 DENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLP 317
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA--LGGFREEITGFTQYGDG 243
V NS M Y + + A F +++ +++WNAM++G+A + ++++ ++ G
Sbjct: 318 VKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSR---G 374
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL+ F ++++ M+P+ + S +L+ C+ + + G++IH ++ V AL
Sbjct: 375 FQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSAL 434
Query: 304 ISIQG------LGTGSFV---------WNSLIDMYGRCG----AIQ-------------- 330
+++ T +FV W S+I Y + G AIQ
Sbjct: 435 VNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNE 494
Query: 331 ---------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
E RYF+MM+ EY++EP M+ Y CM+D+ R G+ DD F+K
Sbjct: 495 ITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIK 554
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEP-------------LSSG---- 408
+ FEP+ A C N ++A +AA L EL+P +S+G
Sbjct: 555 RKGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRD 614
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KV+ F A D SH ++ + L L + K IGY
Sbjct: 615 VARVRKLSKHEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGY 674
Query: 443 MKRI------------PACG----HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
PA G HSE+LA+A GL+ PG +R+ KN+ MC DCHS
Sbjct: 675 EPYQNTELYDSEEDGKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSI 734
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
K+ S REI++ D+ R H F DG CSCGD+
Sbjct: 735 KFFSLLAN----REIVVRDSKRLHKFKDGRCSCGDF 766
>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
Length = 645
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 171/645 (26%), Positives = 250/645 (38%), Gaps = 200/645 (31%)
Query: 15 LTNPDECTVTYAL-IFQRCPKLNNLELGIQVHA-----------HLIVCGVELCAFLGM- 61
L NP T+ AL R P + L G Q+HA H++ + L A G+
Sbjct: 65 LPNPSHLTIPIALKSASRLP--HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 122
Query: 62 ------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
F++MP + WT+++ Y G E V++ G+
Sbjct: 123 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRP------------ 170
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHH 174
D +++ + C R+ ++A+GE +
Sbjct: 171 ---DSFTAVR-------------VLTACARIADLATGETVWRA----------------- 197
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+++ + + V + +D Y KC + A F K++ K V+W AM+ GYA G E
Sbjct: 198 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE- 256
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL+ F M M+P+ +++G L+AC ++ LG++ V
Sbjct: 257 -----------ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 305
Query: 295 LSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG------------ 327
+ +G ALI + Q VWN++I G G
Sbjct: 306 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 365
Query: 328 ---AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ N+ G RYF M K Y++ P +E Y CMVDLL+RAG
Sbjct: 366 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 425
Query: 367 FDDTLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFELEPLSSG------- 408
+ + MP P++A N ++AEH + L LEP +SG
Sbjct: 426 LQEAHQLVDDMPM-PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 484
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
KVH F GD SH L +I +KL
Sbjct: 485 IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 544
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L E+K +GY K HSEKLA+AF L+ T PG +RV KNLR+
Sbjct: 545 LGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRV 604
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K VS R REII+ DN RFH F DG+CSC DYW
Sbjct: 605 CSDCHTAIKLVS----RITHREIIVRDNNRFHCFRDGSCSCNDYW 645
>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
Length = 879
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 238/589 (40%), Gaps = 195/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F M R+V SW +++ + + E ++L +L+ +GV C+ +
Sbjct: 360 VFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEA 419
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKD---------- 157
G+ ++ +++ + + + +LDM+ C + AS F + +D
Sbjct: 420 LAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITA 479
Query: 158 --------------FSNLSL----------------------LKHGKEIHPHHLKKDDLE 181
F + L L GK +H +++ LE
Sbjct: 480 YAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDR-IRETGLE 538
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S++ V N++++ YAK L +A F K+ ++SWN M I+ F Q+G
Sbjct: 539 SNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGM------------ISAFAQHG 586
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ L FF RM PN ++ V++AC+ HG +++ +QL
Sbjct: 587 HADQVLRFFRRMNHEGKLPNDVTFVSVVSACS-----------HGGLVKDGVQL------ 629
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+ ++ + P E Y CMVDL+
Sbjct: 630 -----------------------------------FVSLLHDFPTISPRAEHYYCMVDLI 654
Query: 362 ARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSG--- 408
ARAG+ D F+ P +P A + D+ A +A HL EL P S
Sbjct: 655 ARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYV 714
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
+VH F GDT+++ +I E
Sbjct: 715 VLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILE 774
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L RL E+ K GY K+ HSEKLA+AFGLIST+PG+ LR+IK
Sbjct: 775 ELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIK 834
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ TK++SK REI++ D++RFHHF +G CSCGDYW
Sbjct: 835 NLRVCGDCHTATKFISKITG----REIVVRDSHRFHHFDNGTCSCGDYW 879
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 149/376 (39%), Gaps = 99/376 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + +L+LG +VHA + ++ F+G F++MP
Sbjct: 1 YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
++ +W ++ + +G E+ ++LF S++
Sbjct: 61 VQDALTWARLIRAHGQIGDSEQALHLFR----------------------------SMQL 92
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
EG A V R + + C ++ LL+ G+ IH L+ +ESD V
Sbjct: 93 EGVAPVNRNFVAVLGACS--------------ADPELLEEGRRIHGV-LRGTAMESDHYV 137
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+ +L+ Y KC ++ A F I+ K +V WNAM IT + Q E A
Sbjct: 138 STTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAM------------ITAYAQQDHHEQA 185
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV-LRHHIQLSTGVGIALIS 305
++ F M+ ++ I+ GVL AC+++K ++ K + V R H L
Sbjct: 186 IQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLH--------- 236
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-EQYCCMVDLLARA 364
SF +L++ YG CG ++ + +R F + E + AM QY +
Sbjct: 237 -----DSSFA-TALVNFYGSCGDLE--QAFRAFSRHRLELILATAMITQY-------TQR 281
Query: 365 GQFDDTLNFMKKMPFE 380
++D+ L K M E
Sbjct: 282 ERWDEALELFKVMLLE 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 69/347 (19%), Positives = 127/347 (36%), Gaps = 102/347 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ + + V W +M+ Y ++E+ + +FY ++ EGV ACS+LKD
Sbjct: 157 VFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKD 216
Query: 111 HRVGKDV--------YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------- 153
V K V +D++ F +++ + CG +E A F
Sbjct: 217 LEVAKLVKLCVEEREHDHLHDSSF------ATALVNFYGSCGDLEQAFRAFSRHRLELIL 270
Query: 154 ----------EEKDFSNLSLLK----------------------------HGKEIHPHHL 175
E+ L L K G+ IH +
Sbjct: 271 ATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGF-M 329
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
++ + + N+L++ Y KC L+ A F ++ + ++SWN ++A +
Sbjct: 330 REIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHG--------- 380
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Q+ AL M ++ + IS L CA + G+ IH +++
Sbjct: 381 ---QHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVE----- 432
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
G+ + N+++DMYG C + ++ R F MK
Sbjct: 433 -----------SGIKADVMLDNAILDMYGSCKST--DDASRVFRAMK 466
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 156/588 (26%), Positives = 226/588 (38%), Gaps = 199/588 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL----------------CA--FLGMFE 63
V+ F C L LG Q H ++ CG E+ CA +F+
Sbjct: 220 VVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFD 279
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
M RN SW SM+ Y G EE + L R G++ D+M+S
Sbjct: 280 GMGVRNSVSWCSMVAAYAQNGAEEEAFAAY--------------LGARRSGEEPTDFMVS 325
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
C + L L G+ +H ++ ++++
Sbjct: 326 --------------SALTTC---------------AGLLGLHLGRALHAVAVRSC-IDAN 355
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V ++L+D Y KC ++ A F + Q++LV+WNAM+ GYA GD
Sbjct: 356 IFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYA------------HIGDA 403
Query: 244 ETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ AL F MI++ + PN I+L V+ +C++
Sbjct: 404 QNALLVFDDMIRSGETAPNYITLVNVITSCSR---------------------------- 435
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
G + K +G+ FE M++ + +EP E Y C+VDLL
Sbjct: 436 ------------------------GGLTK-DGYELFETMRERFGIEPRTEHYACVVDLLG 470
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK--- 409
RAG + ++ MP PS + C ++ AA LFEL+P SG
Sbjct: 471 RAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGNHVL 530
Query: 410 ----------------------------------------VHSFIAGDTSHSLVHKISEK 429
VH F A DT H + ++I
Sbjct: 531 LSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQAL 590
Query: 430 LMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKN 475
L +L +++ GYM HSEKLALAFGLI PG P+R++KN
Sbjct: 591 LSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIRIMKN 650
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH K++S REII+ DN RFHHF CSCGDYW
Sbjct: 651 LRICVDCHRAFKFISGIVG----REIIVRDNNRFHHFKQYQCSCGDYW 694
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 90/222 (40%), Gaps = 37/222 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +IH ++ L D V+ + +D Y K LK+A F ++ +++V+WNA++
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
L G E +E + + + PN +S ACA LG++ HG
Sbjct: 197 LDGRPLE------------TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHG 244
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+V++ ++ V NS++D YG+C K F+ M +
Sbjct: 245 FVVKCGFEMDVS----------------VLNSMVDFYGKCRCAGKARA--VFDGMGVRNS 286
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCN 388
+ +C MV A+ G ++ F + S EP +
Sbjct: 287 V-----SWCSMVAAYAQNGAEEEA--FAAYLGARRSGEEPTD 321
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 139/487 (28%), Positives = 207/487 (42%), Gaps = 130/487 (26%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F + F++ SLL G+ +H L+ L D V SL+ Y+ + +A F+ + +
Sbjct: 69 FLLQSFASPSLLHLGRSVHAQILRFG-LAIDPFVQTSLISMYSSSGLVDMARNLFAVMPE 127
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++++SW+ M+ GY G QY + + D++PN ++SGVLAAC
Sbjct: 128 RNVISWSCMINGYVRCG---------QYKEALALFREMQMLGVNDVRPNEFTMSGVLAAC 178
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV--W 316
++ + GK H Y+ + + + +G ALI + LG V W
Sbjct: 179 GRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW 238
Query: 317 NSLID---MYG-----------------RCGAIQ-------------KNEGWRYFEMMKK 343
+++I M+G R A+ +EG Y M +
Sbjct: 239 SAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 298
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AE 393
+Y++ P ++ Y CMVDL RAG+ + N +K MP EP S + DI E
Sbjct: 299 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 358
Query: 394 HAARHLFELEPLSSGK-------------------------------------------V 410
A + L ELEP +SG +
Sbjct: 359 LALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVL 418
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F GD SH +I L + +K GY+ K + HSEKLA
Sbjct: 419 HEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLA 478
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
LA+G + TSPG+P+R++KNLR+C DCH K +SK +REII+ D RFHHF G
Sbjct: 479 LAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKV----FDREIIVRDCNRFHHFTQGL 534
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 535 CSCRDYW 541
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 42/169 (24%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----MFEKM----- 65
P+E T++ L C +L LE G HA++ CG+ + LG M+ K
Sbjct: 164 VRPNEFTMSGVL--AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEK 221
Query: 66 ---------PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC- 105
P ++V +W++M+ + G EE V LF +I++G V+ AC
Sbjct: 222 ATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACV 281
Query: 106 -----SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
SE KD+ + + DY I + C ++D++ + GR++ A
Sbjct: 282 HGGLVSEGKDY-LRRMTEDYSIIPTIQHYGC----MVDLYGRAGRIKEA 325
>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Cucumis sativus]
Length = 697
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 149/587 (25%), Positives = 234/587 (39%), Gaps = 198/587 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
TY IF+ C L ++ LG QVHA ++ ++ ++G F+
Sbjct: 224 NATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFD 283
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
++ RNV SWTS++ Y ++EE +NLF S+++ + + +Y ++
Sbjct: 284 RLQSRNVVSWTSIIAAYFQNEFFEEALNLF------------SKMEIDCIPPN--EYTMA 329
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ F A LS L G ++H +K L+ +
Sbjct: 330 VLFNSAA-----------------------------GLSALCLGDQLHA-RAEKSGLKGN 359
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V N+L+ Y K + A FS + ++++WNA+ ITG + +G G
Sbjct: 360 VMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAI------------ITGHSHHGLG 407
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ AL F M+ T +PN ++ GV+ ACA +K
Sbjct: 408 KEALSMFQDMMATGERPNYVTFIGVILACAHLK--------------------------- 440
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
L+D EG+ YF + K++ + P +E Y C+V LL+R
Sbjct: 441 ---------------LVD-----------EGFYYFNHLMKQFRIVPGLEHYTCIVGLLSR 474
Query: 364 AGQFDDTLNFMKKMPFE------PSSAEPC----NPDIAEHAARHLFELEPLSSGK---- 409
+G+ D+ NFM+ + C + D A +L +LEP G
Sbjct: 475 SGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLEPRDVGTYILL 534
Query: 410 ---------------------------------------VHSFIAGDTSHSLVHKISEKL 430
H F + D H + I E +
Sbjct: 535 SNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKHPEANLIYENV 594
Query: 431 MRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
L S+I+ +GY+ I HSEKLA+A+GL+ T G+P+ VIKNL
Sbjct: 595 KDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPSGAPITVIKNL 654
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RMC DCH+ K +SK R I++ D RFHHF +G CSCGDYW
Sbjct: 655 RMCDDCHTAIKLISKVA----NRVIVVRDANRFHHFQNGCCSCGDYW 697
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 71/365 (19%), Positives = 133/365 (36%), Gaps = 100/365 (27%)
Query: 37 NLELGIQVHAHLIVCG---------------------VELCAFLGMFEKMPERNVFSWTS 75
NL+ G +HAHL + E+ +F+ MP RNV SW++
Sbjct: 34 NLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSA 93
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135
+M Y G E+ LF ++ V +++ I ++C +
Sbjct: 94 LMAGYMQNGNPLEVFELFKKMV---------------VKDNIFPNEYVIATAISSCDSQ- 137
Query: 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
M+++ GK+ H + LK LE V N+L+ Y+
Sbjct: 138 ---MYVE------------------------GKQCHGYALKSG-LEFHQYVKNALIQLYS 169
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
KC + A + + +N + + G Q+ A++ +I
Sbjct: 170 KCSDVGAAIQILYTVPGNDIFCYNLV------------VNGLLQHTHMAEAVDVLKLIIS 217
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
++ N + + CA +K LGK++H +L+ I +G
Sbjct: 218 EGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIG--------------- 262
Query: 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+S+IDMYG+CG + G +F+ ++ + + ++ + F++ LN
Sbjct: 263 -SSIIDMYGKCGNVL--SGRTFFDRLQSR-----NVVSWTSIIAAYFQNEFFEEALNLFS 314
Query: 376 KMPFE 380
KM +
Sbjct: 315 KMEID 319
>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1067
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 164/632 (25%), Positives = 257/632 (40%), Gaps = 178/632 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM 77
P T+ AL C L + +G Q+H + G++L +V +++
Sbjct: 488 PSNFTMISAL--SSCASLGWISVGEQLHCEGLKLGLDL-------------DVSVSNALL 532
Query: 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
+Y GY +E F L++D YD++ G P +
Sbjct: 533 ALYGECGYVKECQKAFSLMLD-------------------YDHVSWNSLIGALADSEPSM 573
Query: 138 DMFIKCGRMEMASGEFEEK--------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189
++ + M +G + S+LSL + GK+IH LK++ + +D + N+
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRN-VAADTAIENA 632
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+ Y KC + FS++ + VSWN+M++GY E+ A++
Sbjct: 633 LLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGY----IHNELL--------PKAMD 680
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
M+Q + + + + VL+ACA V + G E+HG +R ++ +G AL+ +
Sbjct: 681 MVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYA 740
Query: 309 L---------------GTGSFVWNSLIDMYGRCGAIQK---------------------- 331
+ WNS+I Y R G K
Sbjct: 741 KCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVG 800
Query: 332 -----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
NEG+ +F+ M + Y + P ME + CMVDLL R G+ + +F+ +MP +
Sbjct: 801 VLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVK 860
Query: 381 PS------------SAEPCNPDIAEHAARHLFELEPL-------------SSGK------ 409
P+ A N + AA L E+EP S GK
Sbjct: 861 PNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAK 920
Query: 410 ------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
VH F+AGD SH I EKL L +++ GY+
Sbjct: 921 TRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPE 980
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEK+A+AF L S P+R++KNLR+CGDCHS KY+S+
Sbjct: 981 TRFALYDLEGESKEELLSYHSEKIAVAFVLTRPSK-MPIRILKNLRVCGDCHSAFKYISQ 1039
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
ER+I++ D+ RFHHF +G CSCGD+W
Sbjct: 1040 IV----ERQIVLRDSNRFHHFENGKCSCGDFW 1067
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 28/167 (16%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+ G E+H ++ L + + + N L++ YAKC + A F + K V+WN+M
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSM--- 461
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
ITG Q A++ F M +T++ P+ ++ L++CA + +G+++
Sbjct: 462 ---------ITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQL 512
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
H L+ + L V N+L+ +YG CG +++
Sbjct: 513 HCEGLKLGLDLDVSVS----------------NALLALYGECGYVKE 543
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 33/198 (16%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
K +E+H L K+ +DL + N+L++ YA+ L F ++ ++LVSW+ +++G
Sbjct: 90 KDAEELHLQ-LFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISG 148
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK--GFKLGK 282
Y E A E F +M+ PN + V+ AC + G K G
Sbjct: 149 YTRNRMPNE------------ACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGM 196
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSF---------VW-------NSLIDMYGRC 326
+IHG + + LIS+ G G +W NS+I +Y C
Sbjct: 197 QIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVY--C 254
Query: 327 GAIQKNEGWRYFEMMKKE 344
+ F M+KE
Sbjct: 255 QRGDAVSAFDIFSTMQKE 272
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 88/397 (22%), Positives = 153/397 (38%), Gaps = 110/397 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MP RN+ SW+ ++ Y E LF ++ +G V +AC E +
Sbjct: 130 VFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGE 189
Query: 111 H--RVGKDVYDYM-------------ISIKFEGNAC-----VKRP--------------- 135
+ + G ++ M + I GNA +R
Sbjct: 190 YGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSM 249
Query: 136 ------------VLDMFIKCGRMEMASG-EFEEKDFSNL-----SLLKHGKEIHPHHL-- 175
D+F + M G + E F +L SL G + L
Sbjct: 250 ISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTR 309
Query: 176 -KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+K DL V ++L+ +AK + A F K+ +++VS N + I
Sbjct: 310 VEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGL------------I 357
Query: 235 TGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQV----KGFKLGKEIHGYVL 289
G + GE A+E F M + ++ PN+ + +L A + G + G E+H +++
Sbjct: 358 IGLVRQKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPEFHVLENGKRKGSEVHAFLI 415
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
R +G+ A I+I N LI+MY +CGAI N+ F +M + ++
Sbjct: 416 R------SGLLNAQIAIG---------NGLINMYAKCGAI--NDACVVFRLMDNKDSV-- 456
Query: 350 AMEQYCCMVDLLARAGQFDD---TLNFMKKMPFEPSS 383
+ M+ L + QF + T M++ PS+
Sbjct: 457 ---TWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSN 490
>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
Length = 801
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 187/403 (46%), Gaps = 88/403 (21%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAM 221
+ G+EIH + + ESD ++ N+L++ YAKC L A F K Q+ +++W ++
Sbjct: 444 IAQGREIHAR-VVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSL 502
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+AGYA QYG E AL+ F M Q ++PN I+ L AC
Sbjct: 503 VAGYA------------QYGQAERALKLFWTMQQQGVRPNHITFISALTACN-------- 542
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-------- 333
HG L +L +G + G+ S ++ ++D+ GRCG + + E
Sbjct: 543 ---HGGKLEQGCELLSG----MTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQ 595
Query: 334 ----GWRYF--------EMMKKEYNMEPAME-------QYCCMVDLLARAGQFDDTLNFM 374
W E+ + E E M+ Y + + A AG++++
Sbjct: 596 ADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIR 655
Query: 375 KKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLY 434
K M + A+P + + ++HSF AGD SH +I +L RL+
Sbjct: 656 KTMLDKGIRADPGCSAVEVNQ-------------ELHSFSAGDKSHPKSEEIYLELERLH 702
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
IK GY+ K HSEKLA+AFGL+ST GSPLRVIKNLR+C
Sbjct: 703 WSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCS 762
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK R+I+M D+ R+HHF G CSCGDYW
Sbjct: 763 DCHTATKLISKVTG----RDILMRDSSRYHHFTSGTCSCGDYW 801
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 42/230 (18%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL---KVAHCKFSKIKQKHL 215
S L L G+ IH + D E + ++ N+L+ Y+KC L K A + + ++ +
Sbjct: 18 SCLGNLAAGRRIHSQ-ISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDV 76
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQ 274
V+WNAM I+ F + G AL+ F M PN+++ VL +C +
Sbjct: 77 VTWNAM------------ISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVE 124
Query: 275 VKGFKLG--KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
L + IHG ++ G GI +FV +L+D YG+ G++ +
Sbjct: 125 AGLLSLEDVRAIHGRIV--------GAGIE--------REAFVRTALVDSYGKLGSL--D 166
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCC--MVDLLARAGQFDDTLNFMKKMPFE 380
+ W F ++ + EP+ C M+ + G ++L M E
Sbjct: 167 DAWEVF---LRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLE 213
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 73/371 (19%), Positives = 133/371 (35%), Gaps = 71/371 (19%)
Query: 18 PDECTVTYALIFQRCPK--LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
P +VT+ + C + L +LE +H ++ G+E R F T+
Sbjct: 108 PPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE-------------REAFVRTA 154
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKA---CSELKD----HRVGKDVYDYMISIKFEG 128
++ Y LG ++ +F DE + CS + + ++ ++ EG
Sbjct: 155 LVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEG 214
Query: 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
++ + C + + S + +L+ E+ D ++
Sbjct: 215 TKPSGVTLVSVLNACSMLPVGS--------ATAFVLEQAMEVV-------SATRDNVLGT 259
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ YA+ L A F I+ +VSWNAM A Y Q+ AL
Sbjct: 260 TLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAY------------LQHHRPREALV 307
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQV---KGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
F RM+ ++P+ + L ACA +GK I + ++ T V A ++
Sbjct: 308 LFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLN 367
Query: 306 -----------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
I WNS++ YG G E + F+ M+ E ++
Sbjct: 368 MYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGL--GKEAFELFQAMEAEKLVK 425
Query: 349 PAMEQYCCMVD 359
P + ++D
Sbjct: 426 PNKVTFVAVLD 436
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 162/633 (25%), Positives = 254/633 (40%), Gaps = 203/633 (32%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKMPERN 69
+ + P+L NL+ QVHAH+IV G + L G +F +P +
Sbjct: 33 LLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPD 89
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
F + S++ + + G+ + V + ++ G ++ Y + IK
Sbjct: 90 SFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN------------YTFTSVIK---- 133
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189
AC ++LS L+ GKEIH H + SD+ V +
Sbjct: 134 AC---------------------------ADLSALRLGKEIHSH-VMVCGYGSDMYVQAA 165
Query: 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249
L+ YAK +KVA F + Q+ +++WN++++GY G +E G
Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL------------ 213
Query: 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-QG 308
F M+++ QP++ ++ +L++C+Q+ G +H Y + L+ +G +LI++
Sbjct: 214 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 273
Query: 309 LGTGS--------------FVWNSLIDMYGRCGAIQK----------------------- 331
G S W ++I YG G ++
Sbjct: 274 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 333
Query: 332 ----------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFE 380
++G R F MK+ Y + P +E CMVD+ RAG +D F+KK +P E
Sbjct: 334 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 393
Query: 381 PSSA------EPC----NPDIAEHAARHLFELEPLSSG---------------------- 408
P A C N D+ A H+ +EP + G
Sbjct: 394 PGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVR 453
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
K + F GD SH + I L L + GY +P
Sbjct: 454 NMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGY---VP 510
Query: 448 ACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
A HSEKLALAFGL+ T+ G +R++KNLR+C DCHS K++S
Sbjct: 511 APESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHIS 570
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+REII+ D +RFHHF DG+CSC DYW
Sbjct: 571 IIA----DREIIVRDKFRFHHFKDGSCSCLDYW 599
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--------VELC 56
+ L + M + + T+ + + C L+ L LG ++H+H++VCG L
Sbjct: 108 DTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALI 167
Query: 57 AFLG----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
A +F+ MP+R + +W S++ Y+ G +E + LF+L+++ G
Sbjct: 168 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSA 227
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE-- 154
+ +CS+L G ++DY F+ N + +++M+ +CG + A F+
Sbjct: 228 TIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSM 287
Query: 155 -EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV-----NNSLMDFYAKCRYLKVAHCKFS 208
E++ + + G +H + + +L +++ NN + F A ++ C S
Sbjct: 288 KERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNN--ITFVA-----VLSACAHS 340
Query: 209 KIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
+ +++M Y L E + F + G A +F + I +P
Sbjct: 341 GLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPK--EPGPAV 398
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLR-------HHIQLSTGVGIA 302
+ +L AC + F LG ++ +VL H++ LS +A
Sbjct: 399 WTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALA 443
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 161/649 (24%), Positives = 257/649 (39%), Gaps = 217/649 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAH---------LIVCG--VELCAFLGMFEK------ 64
TVT + + C L + L + +H + L VC +++ LGM E+
Sbjct: 169 TVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFH 228
Query: 65 -MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
M R++ +W S++ G + +F + GV A ++ D R
Sbjct: 229 GMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRS 288
Query: 114 GKDVYDYMISIKFEGNACVK-RPVLDMFIKCGRMEMASGEFEE----------------- 155
K ++ Y++ ++ + + ++DM+ K +E A F+
Sbjct: 289 AKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYM 348
Query: 156 --------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+S+L L+ G +H +K L D
Sbjct: 349 QNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIG-LNVD 407
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V L+D YAKC L A F K+ ++ WNA+ I+G +G G
Sbjct: 408 VYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAI------------ISGLGVHGHG 455
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL FSRM Q ++P+ ++ +LAAC+
Sbjct: 456 AEALTLFSRMQQEGIKPDHVTFVSLLAACSHA---------------------------- 487
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
L+D +G +F++M+ Y++ P + Y CM D+L R
Sbjct: 488 --------------GLVD-----------QGRSFFDVMQVTYDIVPIAKHYACMADMLGR 522
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
AGQ D+ NF++ MP +P SA C N ++ + A+++LFEL+P + G
Sbjct: 523 AGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLM 582
Query: 409 -----KVHSFIAGDTSHSLVHK-----------------------------------ISE 428
KV + D SLV + I
Sbjct: 583 SNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQA 642
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
+L L ++I+ +GY+ K HSE+LA+AFG+I+T +PL + K
Sbjct: 643 ELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYK 702
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ TKY+S+ EREII+ D+ RFHHF DG CSCGD+W
Sbjct: 703 NLRVCGDCHNATKYISQIT----EREIIVRDSNRFHHFKDGHCSCGDFW 747
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 84/205 (40%), Gaps = 40/205 (19%)
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLK------HGKEIHPHHLKKDDLESDLLVNN 188
P+L + C F F+ SL++ ++H L+ + + +
Sbjct: 54 PLLRHILSCAY------PFRPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSG 107
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
SL+ Y + + A+ F ++ ++ + +WNAML+G E G
Sbjct: 108 SLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGL----------- 156
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F RM+ + +T+++S VL C + L +H Y ++H G
Sbjct: 157 -FGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKH----------------G 199
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNE 333
L FV N+LID+YG+ G +++ +
Sbjct: 200 LDKELFVCNALIDVYGKLGMLEEAQ 224
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 165/699 (23%), Positives = 267/699 (38%), Gaps = 213/699 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGM-------------- 61
PD +T+A + L+ +Q+H+H+I G L F +
Sbjct: 141 PDH--ITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIAS 198
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL----------K 109
F +MP ++ S+ M+ Y G+ EE + LF + + + +
Sbjct: 199 QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSE 258
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
D G+ ++ I + + V +LD + K +++A F+E
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318
Query: 156 -------------------------KDFSNLSLLK---------HGKEIHPHHLKKDDLE 181
K+F ++L G++ H + +
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAV- 377
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S++ V N+L+D YAKC + A+ F+ + ++ V W A+++ Y GF EE
Sbjct: 378 SEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEE-------- 429
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ F M + ++ + + + L A A + LGK++H V+R + S G
Sbjct: 430 ----ALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGS 485
Query: 302 ALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQKN------------- 332
L+ + GS WN+LI Y + G +
Sbjct: 486 VLVDMYA-NCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLY 544
Query: 333 --------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+ YF M + Y ++P + Y M+D+L R+G+F++ N
Sbjct: 545 PDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAEN 604
Query: 373 FMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG-------------- 408
+ +MPFEP S C N D+A+ AA LF+++ L
Sbjct: 605 LISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAG 664
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+VH F A D +H +I K+ L +
Sbjct: 665 KWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMD 724
Query: 439 KIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
K GY MK HSE+LA+AF LI+T GSP+ ++KNLR C DCH+
Sbjct: 725 KEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHA 784
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK REI + D+ RFHHF DG+CSCGDYW
Sbjct: 785 AIKVISKIVG----REITVRDSSRFHHFRDGSCSCGDYW 819
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 77/193 (39%), Gaps = 34/193 (17%)
Query: 132 VKRPVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
V PV +K G E++ F+ KD + + +++ ++ +++V+
Sbjct: 29 VDIPVDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSG-- 86
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
Y K R L A F + ++ VSW M+ GY +Q + A +
Sbjct: 87 ---YVKSRNLFRARELFESMFSRNEVSWTIMIGGY------------SQNNQPKEAFNLY 131
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
+ M ++ ++P+ I+ + +L+ K +IH +++R G
Sbjct: 132 TEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRF----------------GFS 175
Query: 311 TGSFVWNSLIDMY 323
V+NSL+D Y
Sbjct: 176 ASLIVFNSLVDSY 188
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ + M+ N T+A + L ++ LG Q+H+ +I G+ F G
Sbjct: 433 MFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYA 492
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
+F++MP+RN+ W +++ Y+ G E + F +I+ G+Y
Sbjct: 493 NCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLY 544
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 159/638 (24%), Positives = 261/638 (40%), Gaps = 183/638 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKD 110
+F+ M RNV +WT++M + + +++F ++ G Y ACS L+
Sbjct: 124 VFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQS 183
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME----------------------- 147
++G + Y+I + +A V + ++ KCGR+E
Sbjct: 184 LKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSA 243
Query: 148 ----------------MASGEFEEKDFSNLSLLKHGKEIHPHHLK--------KDDLESD 183
M + + + +F+ S L EI L K ES+
Sbjct: 244 CADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESN 303
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT--GFTQYG 241
L V NSL+ Y K + AH F+++ +V+WNAM+AG+A E+T +
Sbjct: 304 LRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQ---MMELTKDNLSACH 360
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G AL+ FS++ + M+P+ +LS VL+ C+++ + G++IH ++ V
Sbjct: 361 RGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVST 420
Query: 302 ALISIQG--------------LGTGSFV-WNSLIDMYGRCGAIQK--------------- 331
+LIS+ + T + + W S+I + + G Q+
Sbjct: 421 SLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRP 480
Query: 332 ------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
++ YFE+M+K+Y ++PAM+ Y CMVD+ R G+ + LNF
Sbjct: 481 NAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNF 540
Query: 374 MKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP-------------LSS--- 407
+KKM +EPS N ++ +AA L L+P LS+
Sbjct: 541 IKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERF 600
Query: 408 ---------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
KV+SF +H I + L L +++K +
Sbjct: 601 EDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLEDLLAKVKNV 660
Query: 441 GY----------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY P HSEKLA+ FGL + SP+RV+K+ +C D H+
Sbjct: 661 GYEMLESVEISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNSSPIRVVKSTLICRDSHN 720
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
KYVS REII+ D+ R H F +G CSCG++
Sbjct: 721 FIKYVSTLAG----REIIVKDSKRLHKFANGECSCGNF 754
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
H+ K + V + L++ YAKC ++ A F + ++++V+W ++
Sbjct: 92 HVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLM----------- 140
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
GF Q + A+ F M+ P+ +LS VL AC+ ++ KLG + H Y++++H+
Sbjct: 141 -VGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHV 199
Query: 294 QLSTGVGIALISI--------QGLGTGSFV-------WNSLIDMYGRCGAIQKNEGWRYF 338
VG AL S+ L T S + W S + GA K G R F
Sbjct: 200 DFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVK--GLRLF 257
Query: 339 ------EMMKKEYNMEPAMEQYCCMVDL 360
++ E+ + A+ Q C ++ L
Sbjct: 258 VEMIAVDIKPNEFTLTSALSQCCEILSL 285
>gi|302142104|emb|CBI19307.3| unnamed protein product [Vitis vinifera]
Length = 683
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 160/599 (26%), Positives = 262/599 (43%), Gaps = 145/599 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F+++P RNV SWT++M Y E V +F +++ G Y A S+L
Sbjct: 89 VFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASSDLHS 148
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
+GK ++ Y I + E +A + + ++ KCG +E A F
Sbjct: 149 KELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISA 208
Query: 154 ----------------------EEKDF---SNLSL------LKHGKEIHPHHLKKDDLES 182
E +F S LSL L G +IH +K ES
Sbjct: 209 WGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLG-FES 267
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGFREEITGFTQYG 241
+L + NS+M Y KC ++ A F +++ LV+WNAM+AG+A + F ++ +
Sbjct: 268 NLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKD--DLAAHQ 325
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG- 300
G AL F ++ ++ M+P+ + S VL+ C+ + + G+++H ++ LS V
Sbjct: 326 CGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGF-LSDVVNG 384
Query: 301 ---IALISIQGLGTGSFVWN--SLIDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQY 354
AL+ + + N + + + C A +E YF+MMK EY + P M+ Y
Sbjct: 385 QPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHY 444
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS------AEPCNP----DIAEHAARHLFELEP 404
C++D+ R G+ D+ +F+K+M EP+ C ++ +AA L L+P
Sbjct: 445 ACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKP 504
Query: 405 -------------LSSGK------------------------------VHSFIAGDTSHS 421
LS+GK ++SF SH+
Sbjct: 505 KDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNARSHA 564
Query: 422 LVHKISEKLMRLYSEIKKIGY-----------------MKRIPA-CGHSEKLALAFGLIS 463
++ E L L+ + K GY K + + HSEKLA+AFGL++
Sbjct: 565 QSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAFGLLN 624
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
TS P+RV K++ MC DCH+ + +S REII+ D+ R H F++G CSCGD+
Sbjct: 625 TSNAVPIRVTKSISMCRDCHNFIRIISLLSA----REIIIRDSKRLHKFINGHCSCGDF 679
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/551 (25%), Positives = 233/551 (42%), Gaps = 171/551 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE MP+R++ SW +++ G +E D
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHE-------------------------------DA 180
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++ ++ GNA + RP D F + + F+ L GKEIH + ++ +
Sbjct: 181 LMMVREMGNADL-RP--DSFTLSSVLPI---------FAEYVNLLKGKEIHGYAIR-NGY 227
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
++D+ + +SL+D YAKC + + F + Q +SWN+++AG G +E
Sbjct: 228 DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE------- 280
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L+FF +M+ ++PN +S S ++ ACA + LGK++HGY++R + +
Sbjct: 281 -----GLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 335
Query: 301 IALISIQG----LGTGSFV-----------WNSLIDMYGRCG---------------AIQ 330
AL+ + + T ++ W ++I Y G ++
Sbjct: 336 SALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVK 395
Query: 331 KN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
N E W+YF M ++Y + P +E Y + DLL R G+ ++
Sbjct: 396 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYE 455
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
F+ M EP+ + C N ++AE ++ LF ++P + G
Sbjct: 456 FISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGR 515
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
KVH+F+AGD SH +I+E L L ++++
Sbjct: 516 WKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMER 575
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ KR C HSE+LA+ FG+IST G+ +RV KNLR+C DCH+
Sbjct: 576 EGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTA 635
Query: 486 TKYVSKAEKRE 496
TK++SK RE
Sbjct: 636 TKFISKIVGRE 646
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 39/190 (20%)
Query: 192 DFYAK----CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
D Y+K YL F + ++ +VSWN +++G A G E+ AL
Sbjct: 134 DVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHED------------AL 181
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
M D++P++ +LS VL A+ GKEIHGY +R+
Sbjct: 182 MMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN---------------- 225
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
G F+ +SLIDMY +C + ++ R F M+ + + + ++ + G F
Sbjct: 226 GYDADVFIGSSLIDMYAKCTRV--DDSCRVFYMLPQHDGI-----SWNSIIAGCVQNGMF 278
Query: 368 DDTLNFMKKM 377
D+ L F ++M
Sbjct: 279 DEGLKFFQQM 288
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 153/591 (25%), Positives = 235/591 (39%), Gaps = 207/591 (35%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG----VYKACSELKD 110
MF+++P ++V SW +++ Y G Y+E + LF ++ DE V AC++
Sbjct: 191 MFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSAS 250
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
+G+ V+ ++ F N + ++D++IKCG +E ASG FE KD
Sbjct: 251 IELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGG 310
Query: 158 FSNLSLLKH-----------------------------------GKEIHPHHLKK-DDLE 181
+++++L K G+ IH + K+ +
Sbjct: 311 YTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVS 370
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ + SL+D YAKC ++ A F + + L SWNAM+ G+A+ +G
Sbjct: 371 NPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAM------------HG 418
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A + FSRM + ++P+ I+ G+L+AC+ LG+ I
Sbjct: 419 RANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHI----------------- 461
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
F M ++Y + P +E Y CM+DLL
Sbjct: 462 ------------------------------------FRSMTEDYKITPKLEHYGCMIDLL 485
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK-- 409
+G F + + M +P C N ++ E A++L ++EP +SG
Sbjct: 486 GHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYV 545
Query: 410 -----------------------------------------VHSFIAGDTSH-------- 420
VH FI GD H
Sbjct: 546 LLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYG 605
Query: 421 ------------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGS 468
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTKPGT 659
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
L ++KNLR+C +CH TK +SK K REII D RFHHF DG CSC
Sbjct: 660 KLTIVKNLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFXDGVCSC 706
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 131/286 (45%), Gaps = 61/286 (21%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSEL 108
+ +F+ + E N+ W +M + + + L+ +I G+ KAC++
Sbjct: 57 ISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKS 116
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K R G+ ++ +++ + + + V ++ M++K GR E A F++
Sbjct: 117 KAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSS----------- 165
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
D++ +L+ YA Y+ A F +I K +VSWNA+++GYA
Sbjct: 166 ------------HRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYA-- 211
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ G+ + ALE F M++T+++P+ ++ VL+ACAQ +LG+++H ++
Sbjct: 212 ----------ETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWI 261
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
H G G+ + N+LID+Y +CG ++ G
Sbjct: 262 DDH----------------GFGSNLKIVNALIDLYIKCGEVETASG 291
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
[Vitis vinifera]
Length = 1005
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 165/691 (23%), Positives = 278/691 (40%), Gaps = 208/691 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
T + + + C NL G VH+ I G EL F L +F ++
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
+ +V SW++++ + G E +F + GV A ++L D G+
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGE 451
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------------- 155
++ + FE + V ++ M++K G ++ FE
Sbjct: 452 SIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNE 511
Query: 156 ----------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+ S+LS + GK++H + K+ L+ + V
Sbjct: 512 TCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQ-IVKNSLDGNDFVG 570
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D YAK R+L+ A F+++ ++ L +W ++AGYA Q G GE A+
Sbjct: 571 TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA------------QDGQGEKAV 618
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
+ F +M + ++PN +L+ L+ C+++ G+++H ++ V AL+ +
Sbjct: 619 KCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMY 678
Query: 307 -------------QGLGTGSFV-WNSLIDMYGRCGAIQK--------------------- 331
GL + V WN++I Y + G K
Sbjct: 679 AKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 738
Query: 332 ------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EG ++F + K Y + P +E Y CMVD+L RAG+F + +F+++M
Sbjct: 739 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 798
Query: 380 EP------SSAEPC----NPDIAEHAARHLFELEP--------LSS-------------- 407
+ C N + E AA LFELEP LS+
Sbjct: 799 TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNV 858
Query: 408 ---------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
G+VH F++ D SH + +I KL L+ ++ +GY
Sbjct: 859 RALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNT 918
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K+ HSE+LALAF L+STS +R+ KNLR+CGDCH K +S+
Sbjct: 919 DHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEI 978
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+E+++ D FHHF +G+CSC ++W
Sbjct: 979 TN----QELVVRDINCFHHFKNGSCSCQNFW 1005
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 149/371 (40%), Gaps = 97/371 (26%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMP 66
Y+ + + C +L G +H +I G+ + L +F ++P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ER+V SWT+++ + GY VNLF E++ V + + Y ++K
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLF------------CEMRREGVEANEFTYATALK- 237
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
AC LD L+ GK++H +K D SDL V
Sbjct: 238 ---AC--SMCLD-------------------------LEFGKQVHAEAIKVGDF-SDLFV 266
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
++L+D YAKC + +A F + +++ VSWNA+L GF Q GD E
Sbjct: 267 GSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALL------------NGFAQMGDAEKV 314
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
L F RM +++ + +LS VL CA + G+ +H +R +L
Sbjct: 315 LNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELD---------- 364
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
F+ L+DMY +CG + + F ++ +P + + ++ L + GQ
Sbjct: 365 ------EFISCCLVDMYSKCGL--AGDALKVFVRIE-----DPDVVSWSAIITCLDQKGQ 411
Query: 367 FDDTLNFMKKM 377
+ K+M
Sbjct: 412 SREAAEVFKRM 422
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 141/359 (39%), Gaps = 89/359 (24%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
TYA + C +LE G QVHA I G V+L A G +F M
Sbjct: 231 TYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCM 290
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKDHRVGK 115
P++N SW +++ + +G E+++NLF + V K C+ + R G+
Sbjct: 291 PKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQ 350
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF-------------- 158
V+ I I E + + ++DM+ KCG A F E+ D
Sbjct: 351 IVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKG 410
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L +G+ IH + K E D V
Sbjct: 411 QSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHA-CVCKYGFEYDNTVC 469
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N+L+ Y K ++ F + L+SWNA+L +GF +T L
Sbjct: 470 NALVTMYMKIGSVQDGCRVFEATTNRDLISWNALL------------SGFHDNETCDTGL 517
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
F++M+ PN + +L +C+ + LGK++H ++++ + + VG AL+ +
Sbjct: 518 RIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDM 576
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 38/234 (16%)
Query: 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
GR+ SG + ++ L GK IH +K + D + NSL++ YAKC A
Sbjct: 126 GRLRQYSGML--RTCASKGDLNEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYA 182
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F +I ++ +VSW A+ ITGF G G A+ F M + ++ N
Sbjct: 183 CKVFGEIPERDVVSWTAL------------ITGFVAEGYGSGAVNLFCEMRREGVEANEF 230
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
+ + L AC+ + GK++H ++ G + FV ++L+D+Y
Sbjct: 231 TYATALKACSMCLDLEFGKQVHAEAIK----------------VGDFSDLFVGSALVDLY 274
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+CG + E R F M K+ + + +++ A+ G + LN +M
Sbjct: 275 AKCGEMVLAE--RVFLCMPKQNAV-----SWNALLNGFAQMGDAEKVLNLFCRM 321
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311
R + D + SG+L CA GK IHG V++ G+
Sbjct: 118 RGLDFDSKGRLRQYSGMLRTCASKGDLNEGKAIHGQVIK----------------SGINP 161
Query: 312 GSFVWNSLIDMYGRCGA 328
S +WNSL+++Y +CG+
Sbjct: 162 DSHLWNSLVNVYAKCGS 178
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 155/593 (26%), Positives = 237/593 (39%), Gaps = 203/593 (34%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----------------- 59
+P + T A + + C L G Q+HA G+E ++
Sbjct: 125 SPAPNSFTLAFVLKACTALGE---GQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALA 181
Query: 60 -GMFEKMPE-RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F+ M E +N+ +W+SM+G Y+ +G E + LF + GV E+
Sbjct: 182 RNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNP--DEVT-------- 231
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
M+S+ +AC K LD+ GK +H + +
Sbjct: 232 ---MVSVI---SACAKAGALDL---------------------------GKWVHAF-IDR 257
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ DL ++ +L+D YAKC ++ A F + ++ +W+AM+ G A+ G E+
Sbjct: 258 KGITVDLELSTALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAED---- 313
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL FSRM+Q ++PN ++ GVL+ACA
Sbjct: 314 --------ALGLFSRMLQLKVRPNNVTFVGVLSACAH----------------------- 342
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ L+D +G RY+ M+ E +E +ME Y CM
Sbjct: 343 -------------------SGLVD-----------DGRRYWCTMQ-ELGIEASMENYGCM 371
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLS- 406
VDLL R+G D+ +F+ MP P+S DI E A+R LFELEP +
Sbjct: 372 VDLLCRSGLLDEAFSFVTGMPISPNSVIWRNLLVASKSSNRIDIVELASRRLFELEPQNP 431
Query: 407 ------------------------------------------SGKVHSFIAGDTSHSLVH 424
+G +H F+ D SH +
Sbjct: 432 ENYVLLSNLYALNSQWDRVRYMRKKMKDNNVTVVAGCSSIEINGYLHKFVVSDGSHPEIK 491
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
KI L + + G+ K + C HSE+LA+A+GL+ T +
Sbjct: 492 KIRLVLREIADRVLCAGHKPWTAAVLHDVVEEEKEVALCEHSERLAIAYGLLKTKAPHVI 551
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR C DCH TK +SK+ REII+ D RFH F+ G+CSC D+W
Sbjct: 552 RVVKNLRFCPDCHEVTKIISKSYG----REIIVRDRVRFHRFIGGSCSCNDFW 600
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 149/542 (27%), Positives = 223/542 (41%), Gaps = 185/542 (34%)
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
G +L A +F+ M +R+V SW +M+ +Y G E + L+ ++
Sbjct: 242 GHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLI------------- 287
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
VG DV +++ AC ++ ++ GK IH
Sbjct: 288 -VGGDVRCNAVTLSAVLLAC---------------------------AHAGAIQTGKRIH 319
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ + + LE ++ V S++D Y+KC +++A F KIK K+++SW+AM+AGY + G+
Sbjct: 320 -NQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGY- 377
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
G+ AL F+ M ++ ++PN I+ VLAAC+
Sbjct: 378 -----------GQEALHVFTDMRKSGLKPNYITFITVLAACSH----------------- 409
Query: 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351
G + + W + MK E+ +EP +
Sbjct: 410 ----------------------------------AGLLSEGRYW--YNTMKTEFGIEPGV 433
Query: 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFE 401
E Y CMVDLL RAG D+ +K+M +P +A C N ++A+ A LFE
Sbjct: 434 EHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFE 493
Query: 402 LEPLSS-------------------------------------------GKVHSFIAGDT 418
L+ +S GK H F GD
Sbjct: 494 LDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDK 553
Query: 419 SHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGL 461
SH +I L +L I GY +P G HSEKLA+AF L
Sbjct: 554 SHPQYKEIYAYLEKLLERIHDAGY---VPNTGSVLHDLDVEERESMLRIHSEKLAVAFAL 610
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
+++ GS + VIKNLR+C DCH+ K ++K REII+ D RFHHF DG CSCGD
Sbjct: 611 MNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTG----REIIIRDLKRFHHFKDGLCSCGD 666
Query: 522 YW 523
YW
Sbjct: 667 YW 668
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 145/579 (25%), Positives = 244/579 (42%), Gaps = 175/579 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP R+V SW +++ + G Y E +++ + G
Sbjct: 182 VFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNG-------------------- 221
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
K + ++ +L +F E D + GKEIH + ++ +
Sbjct: 222 ----KLKPDSFTLSSILPIFA------------EHVD------VNKGKEIHGYAVR-NGF 258
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ + +SL+D YAKC L+ + F + +K +SWN+++AG Q
Sbjct: 259 DGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAG------------CVQN 306
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-----------KLGKEIHGYVL 289
G+ + L FF RM++ +++P +S S V+ ACA + +LG + + ++
Sbjct: 307 GEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIA 366
Query: 290 RHHIQLSTGVG-----------------IALISI--------QGLGTGSFVWNSLIDMYG 324
+ + G +A +I L S N L D
Sbjct: 367 SSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVR 426
Query: 325 RC------------GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
C A +EGWRYF M++++ + P +E Y + DLL RAG+ ++ +
Sbjct: 427 PCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYD 486
Query: 373 FMKKMP-FEPSSA------EPCNP----DIAEHAARHLFELEPLSSG------------- 408
F+ M +P+ + C ++AE L ++ + G
Sbjct: 487 FISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQ 546
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
+VH+F+AGD SH KI++ L L +++
Sbjct: 547 RWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQME 606
Query: 439 KIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
K GY +KR HSE+LA+A+G+IST+ G+ +RVIKN+R+C DCH+
Sbjct: 607 KEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHT 666
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K+++K REI + DN RFHHF +G+CSCGDYW
Sbjct: 667 AIKFITKIVG----REITVRDNSRFHHFKNGSCSCGDYW 701
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 53/234 (22%)
Query: 162 SLLKHGKEIHPHH--LKKDDLESDLLVNNSLMDFYAKCRY---------------LKVAH 204
+LLKH K H H + L+SDL + N+L++ YAK +
Sbjct: 121 TLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVK 180
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTI 263
F + + +VSWN ++AG+A G E AL+ M + ++P++
Sbjct: 181 KVFDMMPVRDVVSWNTVIAGFAQNGMYVE------------ALDMVREMGKNGKLKPDSF 228
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
+LS +L A+ GKEIHGY +R G F+ +SLIDMY
Sbjct: 229 TLSSILPIFAEHVDVNKGKEIHGYAVR----------------NGFDGDVFIGSSLIDMY 272
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+C ++ + R F ++ ++ + + ++ + G+FD L F ++M
Sbjct: 273 AKCNRLECS--LRAFYILPRKDAI-----SWNSIIAGCVQNGEFDRGLGFFRRM 319
>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
Length = 956
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 166/647 (25%), Positives = 263/647 (40%), Gaps = 177/647 (27%)
Query: 36 NNLELGIQVHAHLIVCGVELCAFLGMFEKMP-----------ERNVFSWTSMMGMYNVLG 84
N L GIQ A +V + + LG+F++ NVF S++ +Y+ G
Sbjct: 328 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCG 387
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYMISIKFEGNACVK---RP 135
+ V LF +I V S + + + +++D MI + +C + +P
Sbjct: 388 SLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQP 447
Query: 136 VLDMFIKCGRMEMASG-EFEEKDF---SNLSLLKHGKEIHPHH------LKKDDL----- 180
+ + +A+ ++ K F ++ L H EI P + + K ++
Sbjct: 448 QVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGL 507
Query: 181 --ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+S +L ++M Y + A F I WN M I GF
Sbjct: 508 QYDSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVM------------IRGFA 553
Query: 239 QYGDGETALEFFSRMIQTDMQP-------NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
G ++LE +S+M++ ++P N +S+ VL AC + + G+ H YV++
Sbjct: 554 TDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQT 613
Query: 292 HIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK----- 331
+ V A++ + + G W+++I YG G +K
Sbjct: 614 GFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLF 673
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
EG YF++M +E+ + + Y CMVDLL R
Sbjct: 674 DQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGR 733
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
AGQ + ++ ++ MP EP ++ C N D+AE A HLF L+P+ +G
Sbjct: 734 AGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLL 793
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
+VH F GD SH K+ KL
Sbjct: 794 SNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKL 853
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
L + +K +GY+ K HSE+LA+AFGLI+TSPG+ LR+ KNL
Sbjct: 854 EELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNL 913
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCH+ K +SK R I++ D +RFH F DG CSCGDYW
Sbjct: 914 RICGDCHNAIKLISKIVN----RVILVRDMHRFHRFEDGVCSCGDYW 956
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 139/349 (39%), Gaps = 97/349 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F++ P NV W S + Y +EE + LF+L+I KAC+ L+
Sbjct: 58 VFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLR 117
Query: 110 DHRVGKDVY------DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+GK ++ D + S F G+A V +++ KCG+M A FEE + L
Sbjct: 118 MLELGKVIHGFAKKNDEIGSDMFVGSALV-----ELYSKCGQMGEALKVFEEFQRPDTVL 172
Query: 164 L-------------KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210
+ + + D + DL + NSL++ YAK K+A FSK+
Sbjct: 173 WTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKM 232
Query: 211 KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+K ++SW+ M+A YA E AL F MI+ +PN++++ L
Sbjct: 233 PEKDVISWSTMIACYANNEAANE------------ALNLFHEMIEKRFEPNSVTVVSALQ 280
Query: 271 ACAQVKGFKLGKEIH----------------GYVLRHHIQLSTGV------------GIA 302
ACA + + GK+IH GY S GV +A
Sbjct: 281 ACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVA 340
Query: 303 LISI----------------------QGLGTGSFVWNSLIDMYGRCGAI 329
++ I G + FV SLI++Y +CG++
Sbjct: 341 VVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSL 389
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 165 KHGKEIHPHHLK--KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+G+ + H + K + D L YAKC L+ A F + ++ WN+ L
Sbjct: 15 NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLG 281
Y RE+ E L F MI T + P+ ++ L ACA ++ +LG
Sbjct: 75 RSYC----REK--------QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
K IHG+ ++ +G+ FV ++L+++Y +CG Q E + FE
Sbjct: 123 KVIHGFAKKN---------------DEIGSDMFVGSALVELYSKCG--QMGEALKVFEEF 165
Query: 342 KK 343
++
Sbjct: 166 QR 167
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/591 (24%), Positives = 238/591 (40%), Gaps = 176/591 (29%)
Query: 23 VTYALIFQRCPK-LNNLELGIQVHAHLIVCGV------------------ELCAFLGMFE 63
VTY + C K ++ LG+QVH ++ GV ++ + +F+
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFD 204
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
M R+V SWTS++ LG +E +LF + + +D +
Sbjct: 205 GMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPE----------------RDTVSWTAM 248
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDD 179
I A R L+MF + +++ EF + L L+ G+ + + + +
Sbjct: 249 IDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVY-MSRQG 307
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ D V N+L+D Y+KC ++ A F + + +W A++ G A+ G+
Sbjct: 308 IKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGY--------- 358
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GE A+E F RMI P+ ++ GVL AC
Sbjct: 359 ---GEEAIEMFHRMIGVSETPDEVTFIGVLTACTHA------------------------ 391
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
L+D +G +F M++ YN+ P + Y C++D
Sbjct: 392 ------------------GLVD-----------KGREFFLSMRETYNIAPNVVHYGCIID 422
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS-- 407
L RAG+ + L+ + +MP P+S C N +I E L +++P +S
Sbjct: 423 LFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTV 482
Query: 408 -----------------------------------------GKVHSFIAGDTSHSLVHKI 426
G +H F+AGD SH + +I
Sbjct: 483 YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEI 542
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
KL + +++ +GY K+ HSEKLA+AF L+S+ P + +R+
Sbjct: 543 YCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRI 602
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLRMC DCH+ K +S R RE+++ D RFHHF G CSC DYW
Sbjct: 603 VKNLRMCLDCHNAIKLIS----RLYGREVVVRDRTRFHHFRHGFCSCKDYW 649
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 36/198 (18%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
S+ ++ V WNA+++G+ ++G+ A F M + P ++
Sbjct: 101 LSERERDTPVVWNALISGH---------NRCRRFGE---ACCSFVDMARAGAAPTPVTYV 148
Query: 267 GVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
VL+AC + G LG ++HG V+ G G+ L ++ V N+L+DMY
Sbjct: 149 SVLSACGKGTGDVLLGMQVHGRVV--------GSGV-LPDLR-------VENALVDMYAE 192
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE 385
C ++ W+ F+ M+ ++ + ++ L R G+ D+ + +MP + +
Sbjct: 193 CADMES--AWKLFDGMQVR-----SVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSW 245
Query: 386 PCNPDIAEHAARHLFELE 403
D AAR LE
Sbjct: 246 TAMIDGYVQAARFREALE 263
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 95/235 (40%), Gaps = 51/235 (21%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ + M +N T + C +L LE+G V ++ G+++ AF+G
Sbjct: 264 MFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYS 323
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DE----G 100
+F+ M R+ F+WT+++ V GY EE + +F+ +I DE G
Sbjct: 324 KCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIG 383
Query: 101 VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
V AC+ G++ + Y I+ C ++D+F + G++ A ++
Sbjct: 384 VLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGC----IIDLFGRAGKITEALDAIDQ 439
Query: 156 KDFSNLSLL---------KHGK----EIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+ S + HG E+ L + D E+ V L + YAKC
Sbjct: 440 MPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENS-TVYTLLSNIYAKC 493
>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
Length = 704
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 157/620 (25%), Positives = 251/620 (40%), Gaps = 147/620 (23%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
+IF P+ + + A+ V L FE+MP +V +WT+++ + G
Sbjct: 109 VIFDEMPRREEVSWNALLSAYAQAGHVHLAR--STFERMPRHDVVAWTALIAVSGQNGQL 166
Query: 87 EEIVNLFYLLIDEGVYKACSELKDHRV------GKDVYDYM------------ISIKFEG 128
EE L+ L+ + + + ++ + V K VY M I+ G
Sbjct: 167 EEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNG 226
Query: 129 NACVKRPVLDMFI---KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DL 184
R +LD + R M ++ +K +E+ D +++ D+
Sbjct: 227 EVVQARKMLDTLPDPDQSTRTSMIVA------YAQNGYIKDAREMF------DSIKNPDV 274
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----------- 233
+ N++M+ Y+ + L A F IKQK LVSWN M+A YA G +E
Sbjct: 275 IACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHK 334
Query: 234 --------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ + D A F M + D T++ + ++A AQ +E+
Sbjct: 335 NVVSHNVMVVAYAHNMDLAEARRIFYSMDEKD----TVTWTAMVAMLAQHGRLAEAQELF 390
Query: 286 GYVLRHHI---------QLSTGVGIALISI------QGLGTGSFVWNSLIDMYGRCGAIQ 330
+ ++ S G G+A + +G + ++ G ++
Sbjct: 391 AKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVE 450
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP--------- 381
EGW +F M+ ++ + P E YC MVD+L RAGQ ++ MPF P
Sbjct: 451 --EGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLL 508
Query: 382 -SSAEPCNPDIAEHAARHLFELEPLSSGK------------------------------- 409
S + + AA L + + SSG
Sbjct: 509 GSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKK 568
Query: 410 ------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-------------- 443
+H F+AG+ SH +I +L RL +KK GY
Sbjct: 569 QPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSVLDEE 628
Query: 444 KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIM 503
K + HSEKLA+AF I+ PG+P+R++KNLR+C DCH+ TK++SK +REII+
Sbjct: 629 KEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKL----LQREIIV 684
Query: 504 IDNYRFHHFVDGACSCGDYW 523
D YRFH+F +G CSCGDYW
Sbjct: 685 RDGYRFHNFENGTCSCGDYW 704
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 148/531 (27%), Positives = 222/531 (41%), Gaps = 180/531 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID-EGVYKACSELKDHRVGKDVYD 119
+F++MPE+NV SW+ M+ Y G Y+ ++LF L EG S+L+ + +
Sbjct: 148 LFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEG-----SQLRPN-------E 195
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ +S + C R L L+HGK +H + + K
Sbjct: 196 FTMS--------------SVLSACAR---------------LGALQHGKWVHAY-IDKTG 225
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEITGFT 238
++ D+++ SL+D YAKC ++ A C F + +K +++W+AM IT F+
Sbjct: 226 MKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAM------------ITAFS 273
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+G E LE F+RM+ ++PN ++ VL AC +HG
Sbjct: 274 MHGLSEECLELFARMVNDGVRPNAVTFVAVLCAC-----------VHG------------ 310
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
L+S EG YF+ M EY + P ++ Y CMV
Sbjct: 311 ---GLVS---------------------------EGNEYFKRMMNEYGVSPMIQHYGCMV 340
Query: 359 DLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSS- 407
DL +RAG+ +D N +K MP EP + + D+ E A L EL+P +S
Sbjct: 341 DLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSS 400
Query: 408 ------------------------------------------GKVHSFIAGDTSHSLVHK 425
G + F AGD SH +
Sbjct: 401 AYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLN 460
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
+ L + ++K GY K HSEKLA+A+ + TSPG+ +R
Sbjct: 461 LYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIR 520
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
++KNLR+C DCH K +SK E REII+ D RFHHF +G CSC DY
Sbjct: 521 IVKNLRICSDCHVAIKIISK----EFNREIIVRDCNRFHHFKNGLCSCKDY 567
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 142/492 (28%), Positives = 208/492 (42%), Gaps = 146/492 (29%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K S + L+ GK+IH L+ S V +SL++FY+KC + +A F +I +
Sbjct: 97 FVLKACSIIMALEEGKQIHAQILR-SGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITE 155
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++LV W+AM++GYA G E AL F M ++P+ +SL GVL+AC
Sbjct: 156 RNLVCWSAMVSGYARLGMINE------------ALIMFREMQVVGIEPDEVSLVGVLSAC 203
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWN 317
A V +GK +H Y+ + I + + ALI++ + S W+
Sbjct: 204 AMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWS 263
Query: 318 SLI-------------DMYGRCGAIQK--------------------NEGWRYFEMMKKE 344
S+I +++ R Q ++G RY+ M E
Sbjct: 264 SMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSML-E 322
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDI------------- 391
+EP+ME Y CMVDLL R G D+ +F +P +P I
Sbjct: 323 LGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTP-------DPVIWRTLLVAYTKNRM 375
Query: 392 ---AEHAARHLFELEPLSS----------------------------------------- 407
AE A L ELEP +
Sbjct: 376 LQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIE 435
Query: 408 --GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GH 451
G VH+F+ GD SH +I + L + +I GY + H
Sbjct: 436 VDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEH 495
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SE+LA+A+GL+ T + +R++KNLR+CGDCH TK +SK +REII+ D RFH
Sbjct: 496 SERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKI----YDREIIVRDRVRFHK 551
Query: 512 FVDGACSCGDYW 523
FV+G CSC DYW
Sbjct: 552 FVNGTCSCKDYW 563
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 39/174 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-QPNTISL 265
FS+I + ++N+++ G +T+ E + F M+ PNT ++
Sbjct: 47 FSQIPNPGIFAYNSVIRGCL----------YTKIPSKE-PIHLFKDMVGKGYPNPNTFTM 95
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+ VL AC+ + + GK+IH +LR G + +V +SL++ Y +
Sbjct: 96 AFVLKACSIIMALEEGKQIHAQILR----------------SGFSSSPYVQSSLVNFYSK 139
Query: 326 CGAIQKNEGWRYFEMMKKEYN--MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
C I + +K ++ E + + MV AR G ++ L ++M
Sbjct: 140 CEEIT---------IARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREM 184
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/487 (27%), Positives = 212/487 (43%), Gaps = 133/487 (27%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY-LKVAHCKFSKIK 211
F K + L L GK +H L K + D+ V N+++ Y C ++ A F ++
Sbjct: 114 FVLKACAGLRDLNLGKAVH-GSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMP 172
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
+ V+W AM+ GYA + G A+ F +M + P+ +++ VL+A
Sbjct: 173 KLDPVTWTAMIGGYA------------RLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSA 220
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-W 316
C + +LGK I Y+ + + + + AL+ + + + + V W
Sbjct: 221 CTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSW 280
Query: 317 NSLI---DMYGR-------------CGAIQKN-----------------EGWRYFEMMKK 343
S+I M+GR G + ++ G +YF M +
Sbjct: 281 TSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTR 340
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAE 393
++ + P +E Y CMVDLL+RAG + L F+++MP EP+ C + E
Sbjct: 341 QFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGE 400
Query: 394 HAARHLFELEPL--------------------------SSGK-----------------V 410
++ L EP+ + GK +
Sbjct: 401 SISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEI 460
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H FI GD SH+ ++I + + + E+K+ GY K HSEKLA
Sbjct: 461 HEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLA 520
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AF L++T PGSP+R+ KNLR+CGDCHS +K++SK REI+M D RFHHF DG
Sbjct: 521 IAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKI----YNREIVMRDRSRFHHFRDGQ 576
Query: 517 CSCGDYW 523
CSCGD+W
Sbjct: 577 CSCGDFW 583
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 26/135 (19%)
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ +++ M+ + PN + VL ACA ++ LGK +HG +++
Sbjct: 92 NAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKF------------- 138
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLA 362
G FV N+++ MY C E +K ++ P ++ + M+ A
Sbjct: 139 ---GFDDDIFVQNTMVHMYCCCSG--------GMEFARKLFDEMPKLDPVTWTAMIGGYA 187
Query: 363 RAGQFDDTLNFMKKM 377
R GQ + +KM
Sbjct: 188 RLGQSAGAVGLFRKM 202
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 203/481 (42%), Gaps = 134/481 (27%)
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
+LS L+ G +H H + SD V +L+ Y+KC L VA F I+ + +V+WN
Sbjct: 121 DLSALRTGMAVHAHSVLLG-FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWN 179
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
AM++GY Q G E A+E + M + P++ + L+ACAQ
Sbjct: 180 AMISGY------------EQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALD 227
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGS------------FVWNSLIDMYG 324
LG+E+ ++ + +S +G AL+++ GL + + W S+I YG
Sbjct: 228 LGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYG 287
Query: 325 R----CGAIQ-----------------------------KNEGWRYFEMMKKEYNMEPAM 351
C AI+ NEG F+ MK+ Y + P
Sbjct: 288 MHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRA 347
Query: 352 EQYCCMVDLLARAGQFDDTLNFMK-KMPFEPSSA------EPC----NPDIAEHAARHLF 400
E YC MVD+ RAG DD + F++ +P EP C N ++ A L
Sbjct: 348 EHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLI 407
Query: 401 ELEP--------LSS-----------------------------------GKVHSFIAGD 417
LEP LS+ G H F G+
Sbjct: 408 ALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGE 467
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLI- 462
SH +I + L L I GY+ + HSEKLA+A+GL+
Sbjct: 468 KSHQQTREIYQYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMM 527
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
S+ +P+RVIKNLR+CGDCH K++S E REII+ D +RFHHF DG CSC +Y
Sbjct: 528 SSGSTTPIRVIKNLRICGDCHLAIKFMSSVES----REIIVRDKHRFHHFKDGKCSCLEY 583
Query: 523 W 523
W
Sbjct: 584 W 584
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 30/132 (22%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM---------------- 61
PD + T+ C + L+LG +V ++ +++ FLG
Sbjct: 208 PD--SATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKAR 265
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+++ ERNV +WTSM+ Y + G+ E + LF+L+ EG V AC+
Sbjct: 266 DWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAG 325
Query: 110 DHRVGKDVYDYM 121
G+ +D M
Sbjct: 326 LVNEGRSAFDSM 337
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/285 (18%), Positives = 116/285 (40%), Gaps = 39/285 (13%)
Query: 35 LNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMPERNVFSWTSM 76
L+ L G+ VHAH ++ G +L +F+ + +R+V +W +M
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181
Query: 77 MGMYNVLGYYEEIVNLF------YLLIDEGVY----KACSELKDHRVGKDVYDYMISIKF 126
+ Y G E + ++ ++ D + AC++ +G++V ++S +
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQM 241
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ + + +++M+ +CG + A F +E++ + + G +H H + L
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHL 301
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE----ITGFTQ 239
+ + + L A C + + + ++++M Y L E + + +
Sbjct: 302 MRLEGPTPNDVTFVAVL--AACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGR 359
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
G + A++F I + P + +L AC K F LG E+
Sbjct: 360 AGLLDDAMQFIRDSIPGEPGPEV--WTAMLGACKMHKNFNLGVEV 402
>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
Length = 935
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/403 (31%), Positives = 187/403 (46%), Gaps = 88/403 (21%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAM 221
+ G+EIH + + ESD ++ N+L++ YAKC L A F K Q+ +++W ++
Sbjct: 578 IAQGREIHAR-VVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSL 636
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+AGYA QYG E AL+ F M Q ++PN ++ L AC
Sbjct: 637 IAGYA------------QYGQAERALKLFWTMQQQGVRPNHVTFISALTACN-------- 676
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-------- 333
HG L +L +G + G+ S ++ ++D+ GRCG + + E
Sbjct: 677 ---HGGKLEQGCELLSG----MTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQ 729
Query: 334 ----GWRYF--------EMMKKEYNMEPAME-------QYCCMVDLLARAGQFDDTLNFM 374
W E+ + E E M+ Y + + A AG++++
Sbjct: 730 ADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIR 789
Query: 375 KKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLY 434
K M + A+P + + ++HSF AGD SH +I +L RL+
Sbjct: 790 KTMLDKGIRADPGCSAVEVNQ-------------ELHSFSAGDKSHPKSEEIYLELERLH 836
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
IK GY+ K HSEKLA+AFGL+ST GSPLRVIKNLR+C
Sbjct: 837 WSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCS 896
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK R+I+M D+ R+HHF G CSCGDYW
Sbjct: 897 DCHTATKLISKVTG----RDILMRDSSRYHHFTSGTCSCGDYW 935
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 150/383 (39%), Gaps = 106/383 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL----------------CAFLGMFEKMPE 67
TY + Q C +L L+ G ++HAH++ ++L C L E + +
Sbjct: 45 TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104
Query: 68 R--NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R +V+S T+M+ + G ++ + LF + V C L I++
Sbjct: 105 RFASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHAL-------------IALV 148
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
NAC S L L G+ IH + D E + +
Sbjct: 149 ---NAC---------------------------SCLGNLAAGRRIHSQ-ISDRDFEENSV 177
Query: 186 VNNSLMDFYAKCRYL---KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ N+L+ Y+KC L K A + + ++ +V+WNAM I+ F + G
Sbjct: 178 LGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAM------------ISAFLRNGS 225
Query: 243 GETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLG--KEIHGYVLRHHIQLSTGV 299
AL+ F M + P N+++ VL +C + L + IHG ++ G
Sbjct: 226 AREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIV--------GA 277
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC--M 357
GI +FV +L+D YG+ G++ ++ W F ++ + EP+ C M
Sbjct: 278 GIE--------REAFVRTALVDSYGKLGSL--DDAWEVF---LRKGDEEPSTSLVTCSAM 324
Query: 358 VDLLARAGQFDDTLNFMKKMPFE 380
+ + G ++L M E
Sbjct: 325 ISACWQNGWPQESLRLFFAMNLE 347
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/381 (19%), Positives = 138/381 (36%), Gaps = 72/381 (18%)
Query: 9 LLQSMDLTN-PDECTVTYALIFQRCPK--LNNLELGIQVHAHLIVCGVELCAFLGMFEKM 65
L + MD P +VT+ + C + L +LE +H ++ G+E
Sbjct: 232 LFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIE----------- 280
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA---CSELKD----HRVGKDVY 118
R F T+++ Y LG ++ +F DE + CS + + ++
Sbjct: 281 --REAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
++ EG ++ + C +++ S + +L+ E+
Sbjct: 339 RLFFAMNLEGTKPSGVTLVSVLNACSMLQVGS--------ATAFVLEQAMEVV------- 383
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
D ++ +L+ YA+ L A F I+ +VSWNAM A Y
Sbjct: 384 SATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAY------------L 431
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV---KGFKLGKEIHGYVLRHHIQL 295
Q+ AL F RM+ ++P+ + L ACA +GK I + ++
Sbjct: 432 QHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEG 491
Query: 296 STGVGIALIS-----------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
T V A ++ I WNS++ YG G E + F
Sbjct: 492 DTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGL--GKEAFELF 549
Query: 339 EMMKKEYNMEPAMEQYCCMVD 359
+ M+ E ++P + ++D
Sbjct: 550 QAMEAEKLVKPNKVTFVAVLD 570
>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
Length = 912
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 152/585 (25%), Positives = 240/585 (41%), Gaps = 145/585 (24%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV------GK 115
FE+MP +V +WT+++ + G EE L+ L+ + + + ++ + V K
Sbjct: 350 FERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESK 409
Query: 116 DVYDYM------------ISIKFEGNACVKRPVLDMFI---KCGRMEMASGEFEEKDFSN 160
VY M I+ G R +LD + R M ++
Sbjct: 410 RVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVA------YAQ 463
Query: 161 LSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
+K +E+ D +++ D++ N++M+ Y+ + L A F IKQK LVSWN
Sbjct: 464 NGYIKDAREMF------DSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWN 517
Query: 220 AMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQP 260
M+A YA G +E I + D A F M + D
Sbjct: 518 TMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMIVAYAHNMDLAEARRIFYSMDEKD--- 574
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI---------QLSTGVGIALISI----- 306
T++ + ++A AQ +E+ + ++ S G G+A +
Sbjct: 575 -TVTWTAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMR 633
Query: 307 -QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+G + ++ G ++ EGW +F M+ ++ + P E YC MVD+L RAG
Sbjct: 634 NEGAKPDHITFMGILIACSHVGLVE--EGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAG 691
Query: 366 QFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPLSSGK------ 409
Q ++ MPF P S + + AA L + + SSG
Sbjct: 692 QLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLAN 751
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
+H F+AG+ SH +I +L R
Sbjct: 752 MYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSR 811
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L +KK GY K + HSEKLA+AF I+ PG+P+R++KNLR+
Sbjct: 812 LQELMKKAGYQPDTKAVLHSILDEEKEVLLSYHSEKLAIAFASIACEPGTPIRIMKNLRV 871
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ TK++SK +REII+ D YRFH+F +G CSCGDYW
Sbjct: 872 CSDCHTATKFLSKL----LQREIIVRDGYRFHNFENGTCSCGDYW 912
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 66/244 (27%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
++C KD G+ +++ + + GN ++ ++ M+ KC R++ A F E
Sbjct: 20 RSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNELP----- 74
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
E ++ LM Y++ L A F +I ++VSWN+++
Sbjct: 75 ------------------EPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLI 116
Query: 223 AGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
AG++ GF ITG+ Q GD +A F R + N I
Sbjct: 117 AGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPEH----NVI 172
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
S + + I GY I + GV + G WN+++ Y
Sbjct: 173 SWNAL---------------ITGYSDNRMIPEAKGV-----FDRAPGRDKISWNAMLTAY 212
Query: 324 GRCG 327
+ G
Sbjct: 213 AQSG 216
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 31/195 (15%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY------KACS--ELKDH 111
G+F++ P R+ SW +M+ Y G + +F + + KAC+ E+ H
Sbjct: 192 GVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGH 251
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFI---KCGRMEMASGEFEEKD----------F 158
V +++ M + NA ++ ++I K G E S ++D +
Sbjct: 252 AV--EIFAAMP----DRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSMLSAY 305
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L++ + I ++DD S N+L+ YA+ +L +A F ++ + +V+W
Sbjct: 306 SRHGLVEEARRIFDRAARRDDEVS----WNALLSAYAQAGHLHLARSTFERMPRHDVVAW 361
Query: 219 NAMLAGYALGGFREE 233
A++A G EE
Sbjct: 362 TALIAVSGQNGQLEE 376
>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
Length = 913
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/592 (25%), Positives = 237/592 (40%), Gaps = 200/592 (33%)
Query: 61 MFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
MF MPE + SW S++G + + + V F ++ G + A S L
Sbjct: 393 MFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLS 452
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------------------EMA 149
H V ++ ++ + + +L + KCG M M
Sbjct: 453 LHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 512
Query: 150 SGEFEEKDF-----------------------------SNLSLLKHGKEIHPHHLKKDDL 180
SG + ++++ L+ G E+H ++ L
Sbjct: 513 SGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRAC-L 571
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
ESD++V ++L+D Y+KC + A F + +++ SWN+M++GYA ++
Sbjct: 572 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYA------------RH 619
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G GE AL+ F+RM+ P+ ++ GVL+AC+ V G+V
Sbjct: 620 GHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHV----------GFV------------ 657
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
EG+ +F+ M + Y + P +E + CMVDL
Sbjct: 658 -------------------------------EEGFEHFKSMSEVYRLSPRVEHFSCMVDL 686
Query: 361 LARAGQFDDTLNFMKKMPFEPS------------SAEPCNPDIAEHAARHLFELEP---- 404
L RAG+ D+ +F+ MP +P+ A N ++ AA L ELEP
Sbjct: 687 LGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAV 746
Query: 405 --------LSSGK-------------------------------VHSFIAGDTSHSLVHK 425
+SG+ VH F+AGD H
Sbjct: 747 NYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDL 806
Query: 426 ISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLR 471
I +KL L +++ GY+ + HSEK+A+AF L S P+R
Sbjct: 807 IYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQS-ALPIR 865
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+CGDCHS Y+SK R+I++ D+ RFHHF DG CSCGDYW
Sbjct: 866 IMKNLRVCGDCHSAFGYISKIVG----RQIVLRDSNRFHHFEDGKCSCGDYW 913
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+ +E+H +K +L ++N+L++ Y + L A F ++ ++LV+W +++G
Sbjct: 116 EEARELHLQSIKYG-FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 174
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--KGFKLGK 282
Y TQ G + A F M++ PN + L AC + G KLG
Sbjct: 175 Y------------TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGV 222
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL-------------GTG---SFVWNSLIDMYGRC 326
+IHG + + V LIS+ G G G S WNS+I +Y R
Sbjct: 223 QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRR 282
Query: 327 GAIQKNEGWRYFEMMKKE 344
G + F M+KE
Sbjct: 283 G--DAVSAYDLFSSMQKE 298
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 86/449 (19%), Positives = 169/449 (37%), Gaps = 129/449 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE--- 107
+F++M RN+ +W ++ Y G +E F ++ G +AC E
Sbjct: 156 LFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGP 215
Query: 108 ------------LKDHRVGKDVY--DYMISIK-------------FEG----NACVKRPV 136
+ R G DV + +IS+ F+G N+ +
Sbjct: 216 SGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSI 275
Query: 137 LDMFIKCG------------RMEMASGEFEEKD-FSNLSLL----KHGKEIHPHHLKKDD 179
+ ++ + G + E F+ D FS S+L + G+E+H H ++
Sbjct: 276 ISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGL 335
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG-------------YA 226
++ + + N L++ YAK + A F + +K VSWN++++G ++
Sbjct: 336 NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFS 395
Query: 227 LGGFREEITGFTQYG---DGET----ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
L ++++ + G D E A+++F +M++ + ++ +L+A + + +
Sbjct: 396 LMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHE 455
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGL----------------GTGSFVWNSLIDMY 323
+ +IH VL++ + T +G AL+S G WNS+I Y
Sbjct: 456 VSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY 515
Query: 324 GRCGAIQKNEGWRYFEMMKKEY-----------------NMEPAMEQYCC---------- 356
+ K +F M K + +E ME + C
Sbjct: 516 IHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDV 575
Query: 357 -----MVDLLARAGQFDDTLNFMKKMPFE 380
+VD+ ++ G+ D F + MP
Sbjct: 576 VVGSALVDMYSKCGRIDYASRFFELMPLR 604
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC---------AFLGM----------- 61
+ T+A I C + LE G++VHA CG+ C A + M
Sbjct: 540 SFTFATILSACASVATLERGMEVHA----CGIRACLESDVVVGSALVDMYSKCGRIDYAS 595
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
FE MP RNV+SW SM+ Y G+ E+ + LF ++ +G
Sbjct: 596 RFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG 636
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 171/645 (26%), Positives = 250/645 (38%), Gaps = 200/645 (31%)
Query: 15 LTNPDECTVTYAL-IFQRCPKLNNLELGIQVHA-----------HLIVCGVELCAFLGM- 61
L NP T+ AL R P + L G Q+HA H++ + L A G+
Sbjct: 544 LPNPSHLTIPIALKSASRLP--HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 601
Query: 62 ------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
F++MP + WT+++ Y G E V++ G+
Sbjct: 602 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRP------------ 649
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHH 174
D +++ + C R+ ++A+GE +
Sbjct: 650 ---DSFTAVR-------------VLTACARIADLATGETVWRA----------------- 676
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+++ + + V + +D Y KC + A F K++ K V+W AM+ GYA G E
Sbjct: 677 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE- 735
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL+ F M M+P+ +++G L+AC ++ LG++ V
Sbjct: 736 -----------ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 784
Query: 295 LSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG------------ 327
+ +G ALI + Q VWN++I G G
Sbjct: 785 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 844
Query: 328 ---AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ N+ G RYF M K Y++ P +E Y CMVDLL+RAG
Sbjct: 845 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 904
Query: 367 FDDTLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFELEPLSSG------- 408
+ + MP P++A N ++AEH + L LEP +SG
Sbjct: 905 LQEAHQLVDDMPM-PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 963
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
KVH F GD SH L +I +KL
Sbjct: 964 IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 1023
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L E+K +GY K HSEKLA+AF L+ T PG +RV KNLR+
Sbjct: 1024 LGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRV 1083
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K VS R REII+ DN RFH F DG+CSC DYW
Sbjct: 1084 CSDCHTAIKLVS----RITHREIIVRDNNRFHCFRDGSCSCNDYW 1124
>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
Length = 587
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 163/594 (27%), Positives = 246/594 (41%), Gaps = 161/594 (27%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P RNV SWTS++ G++ + F+ + E V + L+ GK ++ +
Sbjct: 19 PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREAV----ASLRLPVTGKQIHALAVKCG 74
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL--------LKHGK--------- 168
+ V DM+ K + A F+E NL + G+
Sbjct: 75 RILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFI 134
Query: 169 -----EIHPHHLK--------KDDLESDL------LVNNSLMDFYAKCRYLKVAHCKFSK 209
+ HP+ + D L +L LV S D R ++ F++
Sbjct: 135 EFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSIRSSEII---FTE 191
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ K+ VSW +++A Y Q + E A + R + ++ + +S VL
Sbjct: 192 MGTKNAVSWCSLVAAY------------VQNHEDEKASVLYLRSRKDIVETSDFMISSVL 239
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV 315
+ACA + G +LG+ IH + ++ ++ + VG AL+ + G + + V
Sbjct: 240 SACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLV 299
Query: 316 W-NSLIDMYGR------------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
NSLI Y CGA++ G + F+ M+ Y +EP E Y C
Sbjct: 300 TRNSLIGGYAHQGQVDMALALFEEMAPRGCGAVEN--GMKIFDSMRSTYGIEPGAEHYSC 357
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLS 406
+VD+L RAG + F+KKMP +P+ + C P + AA +LF+L+P
Sbjct: 358 IVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKD 417
Query: 407 SG-------------------------------------------KVHSFIAGDTSHSLV 423
SG +VH+F A D SH L
Sbjct: 418 SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILN 477
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
+I L +L +E++ GY K HSEKLALAFGL+S P
Sbjct: 478 KEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVP 537
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+ KNLR+CGDCHS K+VS + K REII+ DN RFH F DG CSC DYW
Sbjct: 538 IRITKNLRICGDCHSFFKFVSGSVK----REIIVRDNNRFHRFKDGICSCKDYW 587
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 115/282 (40%), Gaps = 54/282 (19%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFLGMFEKMPERNVFSWTSMM 77
++T+ C +L LG+Q+H ++ G V + + +F +M +N SW S++
Sbjct: 145 SITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSIRSSEIIFTEMGTKNAVSWCSLV 204
Query: 78 GMYNVLGYYEEIVNLFYL-----------LIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
Y V + +E ++ YL + V AC+ + +G+ ++ + +
Sbjct: 205 AAY-VQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACV 263
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
E V ++DM+ KCG +E + F+E E +L+
Sbjct: 264 ERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-----------------------EKNLVT 300
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIK-------QKHLVSWNAMLAGYALGGFREE----IT 235
NSL+ YA + +A F ++ + + +++M + Y + E +
Sbjct: 301 RNSLIGGYAHQGQVDMALALFEEMAPRGCGAVENGMKIFDSMRSTYGIEPGAEHYSCIVD 360
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+ G E A EF +M +QP TIS+ G L ++ G
Sbjct: 361 MLGRAGMVERAYEFIKKM---PIQP-TISVWGALQNACRMHG 398
>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 721
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 139/510 (27%), Positives = 221/510 (43%), Gaps = 142/510 (27%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+M K +++M + ++L L G++ H L K + V + L+DFY+KC
Sbjct: 230 EMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK-LIKAGFHQNSHVGSGLIDFYSKC 288
Query: 198 ---RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
+ + F +I LV WN M++GY++ EE E A++ F +M
Sbjct: 289 GGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMN---EE--------HSEEAVKSFRQMQ 337
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS-TGVGIALISI------- 306
+ +P+ S V +AC+ + GK+IHG ++ +I + V ALIS+
Sbjct: 338 RIGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNL 397
Query: 307 -------------------------------------------QGLGTGSFVWNSLIDMY 323
G+ + + +++
Sbjct: 398 LDARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSAC 457
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
CG + +EG +YF MK+ + +EP E Y CM+DLL RAG+ ++ F+ MP++P S
Sbjct: 458 AHCGKV--DEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGS 515
Query: 384 AE------PC----NPDIAEHAARHLFELEPLSSG------------------------- 408
C N +AE AA+ L ++PL++
Sbjct: 516 VAWAALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSM 575
Query: 409 ------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------- 443
K H F+A D SH ++ +++E L + ++KK+GY+
Sbjct: 576 RGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ + HSEKLA+AFGL+ST G + V+KNLR+CGDCH+ K++S
Sbjct: 636 VKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDGEEIVVVKNLRICGDCHNAIKFMSAVA 695
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ DN RFH F DG CSCGDYW
Sbjct: 696 G----REIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 97/247 (39%), Gaps = 54/247 (21%)
Query: 148 MASGEFEEKDFSNLSL-------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
M +++ K F +L L L GK +H ++K + S ++N ++ Y+KC L
Sbjct: 1 MNQTQWKFKSFRDLLLKSVAERDLFTGKSLHALYVK-SIVASSTYLSNHFVNLYSKCGCL 59
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALG-------------------GFREEITGFTQYG 241
A F ++ ++ S+N ++ YA + I+G+
Sbjct: 60 SYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADAR 119
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ A+ F RM + + + +LSG++AAC L K++H + + + V
Sbjct: 120 ETVAAMVLFKRMRELGFEVDGFTLSGLIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNN 177
Query: 302 ALISIQGLG----------------TGSFVWNSLIDMYGRCGAIQKNEGWR----YFEMM 341
A ++ G WNS+I YG Q EG + Y EM+
Sbjct: 178 AFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYG-----QHKEGAKALALYKEMI 232
Query: 342 KKEYNME 348
K + ++
Sbjct: 233 FKGFKID 239
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 171/645 (26%), Positives = 250/645 (38%), Gaps = 200/645 (31%)
Query: 15 LTNPDECTVTYAL-IFQRCPKLNNLELGIQVHA-----------HLIVCGVELCAFLGM- 61
L NP T+ AL R P + L G Q+HA H++ + L A G+
Sbjct: 520 LPNPSHLTIPIALKSASRLP--HPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLL 577
Query: 62 ------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK 115
F++MP + WT+++ Y G E V++ G+
Sbjct: 578 HRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRP------------ 625
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHH 174
D +++ + C R+ ++A+GE +
Sbjct: 626 ---DSFTAVR-------------VLTACARIADLATGETVWRA----------------- 652
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+++ + + V + +D Y KC + A F K++ K V+W AM+ GYA G E
Sbjct: 653 AEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPRE- 711
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
AL+ F M M+P+ +++G L+AC ++ LG++ V
Sbjct: 712 -----------ALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFL 760
Query: 295 LSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG------------ 327
+ +G ALI + Q VWN++I G G
Sbjct: 761 DNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 820
Query: 328 ---AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++ N+ G RYF M K Y++ P +E Y CMVDLL+RAG
Sbjct: 821 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 880
Query: 367 FDDTLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFELEPLSSG------- 408
+ + MP P++A N ++AEH + L LEP +SG
Sbjct: 881 LQEAHQLVDDMPM-PANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSN 939
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
KVH F GD SH L +I +KL
Sbjct: 940 IYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDE 999
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L E+K +GY K HSEKLA+AF L+ T PG +RV KNLR+
Sbjct: 1000 LGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRV 1059
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ K VS R REII+ DN RFH F DG+CSC DYW
Sbjct: 1060 CSDCHTAIKLVS----RITHREIIVRDNNRFHCFRDGSCSCNDYW 1100
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/543 (26%), Positives = 216/543 (39%), Gaps = 185/543 (34%)
Query: 52 GVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
G +L A +F +MPERN+ SW++M+ AC +
Sbjct: 158 GGDLGAAREVFARMPERNLVSWSAMV-------------------------DACVRAGEF 192
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
V+D M+ +F + V VL K ++L ++ G+ +H
Sbjct: 193 GEALWVFDRMMREEFRPDVVVLVSVL------------------KACAHLGAVERGRWVH 234
Query: 172 PHHLKKDDL---ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+L+ +L++ +L+D Y KC ++ A F + ++ +V WNAM+ G A+
Sbjct: 235 -RYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMN 293
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G+ GE ALE F RM+Q PN + VL AC
Sbjct: 294 GY------------GERALELFRRMLQKGFMPNESTFIAVLCACTHT------------- 328
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
GR +EG R F+ M+ +Y ++
Sbjct: 329 -----------------------------------GRV-----DEGKRVFKSMQ-DYGIK 347
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARH 398
P E Y C+ DLL RAG ++ + MP EP +++ C + ++ E +
Sbjct: 348 PQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKR 407
Query: 399 LFELEPLSSGK-------------------------------------------VHSFIA 415
L ELEP G+ VH FI+
Sbjct: 408 LIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFIS 467
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKR---------------IPACGHSEKLALAFG 460
GDT H L KI L + ++ IGY+K I HSE+LALAFG
Sbjct: 468 GDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFG 527
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
+++ G P+R++KNLR+C DCH +K VSK EREII+ D +RFH F DG CSC
Sbjct: 528 ILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLY----EREIIVRDRHRFHVFRDGVCSCN 583
Query: 521 DYW 523
DYW
Sbjct: 584 DYW 586
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K + +L LL + + L D++ N+++ Y K L A F+++ +++L
Sbjct: 121 KLYCSLGLLDRARRV----LYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNL 176
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSW+AM+ G ++G+ AL F RM++ + +P+ + L VL ACA +
Sbjct: 177 VSWSAMVDACVRAG---------EFGE---ALWVFDRMMREEFRPDVVVLVSVLKACAHL 224
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ G+ +H Y L TG S G + +L+DMY +CG ++ + W
Sbjct: 225 GAVERGRWVHRY-------LETG------SFGGRRGNLMLETALVDMYCKCGCME--DAW 269
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ F+ + + + + M+ LA G + L ++M
Sbjct: 270 QVFDGVHRR-----DVVLWNAMIGGLAMNGYGERALELFRRM 306
>gi|125575136|gb|EAZ16420.1| hypothetical protein OsJ_31889 [Oryza sativa Japonica Group]
Length = 664
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 169/678 (24%), Positives = 272/678 (40%), Gaps = 190/678 (28%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
+PD VT A I C L L +G Q+H+++I CG++L ++G
Sbjct: 6 SPD--AVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYA 63
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD-----HRV 113
+F + E+N W ++ Y E F L+ + G+ R
Sbjct: 64 RSVFAAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPDTITYNSFIAAYARA 123
Query: 114 GKDVYDY-----MISIKFEGNACVKRPVLDMFIKCGR----------MEMAS-GE----- 152
G+ Y M+ I + N ++ GR M+++S GE
Sbjct: 124 GQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFRYMQVSSDGEAKGWA 183
Query: 153 -----FEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
+ + S+L GKE+H + + L S++ V++ L+D Y K
Sbjct: 184 LPGNSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSG-LISNIFVSSKLVDLYGKTG 242
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
+ A F +I K++V+WN++LA Y Q E AL+ F MI++++
Sbjct: 243 DVGTADKVFRRISNKNVVTWNSILASY------------RQNRKPEIALKLFHEMIKSNL 290
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ-LSTGVGIALISIQG----LGTGS 313
PN ++L L + + G+E+HGY+ ++ T + ALI + G +
Sbjct: 291 LPNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDAR 350
Query: 314 FV-----------WNSLIDMY---GRCGAIQK---------------------------- 331
V WN+++ Y G ++K
Sbjct: 351 LVFECTDEKDIATWNAIMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQEG 410
Query: 332 --NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----- 384
E RYF M+ Y ++P ++ Y CMVD++ AG +++L ++KM EP
Sbjct: 411 SMEEARRYFYSMEDVYGIQPTLKHYTCMVDIMGMAGLLEESLELIQKMQLEPDGCLWSIL 470
Query: 385 -EPC----NPDIAEHAARHLFELEPLSSGK------------------------------ 409
+ C N +I E AA+ LFELEP ++
Sbjct: 471 LKACKLHSNLEIGEKAAKALFELEPNNTSNYMSLSNIYADNGLWESTEALRVAMTEQGLN 530
Query: 410 -------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY----------MKRI 446
VH+F AGD+SH KI L +++ GY +
Sbjct: 531 VERQCSRLYLGTDVHTFEAGDSSHPAFEKILSTWNDLSDRMEQSGYPPQDIEPYSNAEAD 590
Query: 447 P-ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
P +C H+E++AL +GLIS +R+ KN RMC +CHS K++S R+ REI + D
Sbjct: 591 PLSCQHTERIALCYGLISVRVHDLIRISKNFRMCMECHSSIKFIS----RDMNREIFVSD 646
Query: 506 NYRFHHFVDGACSCGDYW 523
+HHF +GACSCGD W
Sbjct: 647 GCTYHHFQNGACSCGDMW 664
>gi|115482524|ref|NP_001064855.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|110289259|gb|AAP54276.2| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|110289260|gb|ABG66139.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639464|dbj|BAF26769.1| Os10g0477200 [Oryza sativa Japonica Group]
gi|215695099|dbj|BAG90290.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 699
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 169/678 (24%), Positives = 272/678 (40%), Gaps = 190/678 (28%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
+PD VT A I C L L +G Q+H+++I CG++L ++G
Sbjct: 41 SPD--AVTVASILPACTGLMALGIGKQLHSYVIRCGIKLNVYIGSSLIGMYSECGEFGYA 98
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD-----HRV 113
+F + E+N W ++ Y E F L+ + G+ R
Sbjct: 99 RSVFAAIEEKNATVWNELIRSYINEERMNEAWEAFRLMKENGLQPDTITYNSFIAAYARA 158
Query: 114 GKDVYDY-----MISIKFEGNACVKRPVLDMFIKCGR----------MEMAS-GE----- 152
G+ Y M+ I + N ++ GR M+++S GE
Sbjct: 159 GQKEQAYTLLSNMVEIGLKPNVVSMNALISGLHHHGRHADALEAFRYMQVSSDGEAKGWA 218
Query: 153 -----FEEKDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
+ + S+L GKE+H + + L S++ V++ L+D Y K
Sbjct: 219 LPGNSIQPNGTTITSVLSLLTDLRLDRLGKEVHCYAFRSG-LISNIFVSSKLVDLYGKTG 277
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
+ A F +I K++V+WN++LA Y Q E AL+ F MI++++
Sbjct: 278 DVGTADKVFRRISNKNVVTWNSILASY------------RQNRKPEIALKLFHEMIKSNL 325
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ-LSTGVGIALISIQG----LGTGS 313
PN ++L L + + G+E+HGY+ ++ T + ALI + G +
Sbjct: 326 LPNLVTLQIALLSSGMTMALQHGRELHGYIRKNWPDGYPTALASALIDMYGKCGKIEDAR 385
Query: 314 FV-----------WNSLIDMY---GRCGAIQK---------------------------- 331
V WN+++ Y G ++K
Sbjct: 386 LVFECTDEKDIATWNAIMSAYLLHRIPGEVKKLFKYIEQSGIQPDPVTFIILLSACKQEG 445
Query: 332 --NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----- 384
E RYF M+ Y ++P ++ Y CMVD++ AG +++L ++KM EP
Sbjct: 446 SMEEARRYFYSMEDVYGIQPTLKHYTCMVDIMGMAGLLEESLELIQKMQLEPDGCLWSIL 505
Query: 385 -EPC----NPDIAEHAARHLFELEPLSSGK------------------------------ 409
+ C N +I E AA+ LFELEP ++
Sbjct: 506 LKACKLHSNLEIGEKAAKALFELEPNNTSNYMSLSNIYADNGLWESTEALRVAMTEQGLN 565
Query: 410 -------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY----------MKRI 446
VH+F AGD+SH KI L +++ GY +
Sbjct: 566 VERQCSRLYLGTDVHTFEAGDSSHPAFEKILSTWNDLSDRMEQSGYPPQDIEPYSNAEAD 625
Query: 447 P-ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
P +C H+E++AL +GLIS +R+ KN RMC +CHS K++S R+ REI + D
Sbjct: 626 PLSCQHTERIALCYGLISVRVHDLIRISKNFRMCMECHSSIKFIS----RDMNREIFVSD 681
Query: 506 NYRFHHFVDGACSCGDYW 523
+HHF +GACSCGD W
Sbjct: 682 GCTYHHFQNGACSCGDMW 699
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I+G Q + AL F M +++ P+ ++++ +L AC + +GK++H YV+R I
Sbjct: 17 ISGCVQNARYDEALNIFCEMCESE-SPDAVTVASILPACTGLMALGIGKQLHSYVIRCGI 75
Query: 294 QLSTGVGIALISIQ------GLGTGSF---------VWNSLIDMYGRCGAIQKNEGWRYF 338
+L+ +G +LI + G F VWN LI Y + NE W F
Sbjct: 76 KLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSY--INEERMNEAWEAF 133
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+M KE ++P Y + ARAGQ + + M
Sbjct: 134 RLM-KENGLQPDTITYNSFIAAYARAGQKEQAYTLLSNM 171
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 68/299 (22%)
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDHRVGKDVYDY 120
V SW ++ Y+E +N+F + + + AC+ L +GK ++ Y
Sbjct: 10 VNSWNCIISGCVQNARYDEALNIFCEMCESESPDAVTVASILPACTGLMALGIGKQLHSY 69
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKD----------FSNLSLLKHG 167
+I + N + ++ M+ +CG A F EEK+ + N +
Sbjct: 70 VIRCGIKLNVYIGSSLIGMYSECGEFGYARSVFAAIEEKNATVWNELIRSYINEERMNEA 129
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHLVSWNAMLA 223
E +K++ L+ D + NS + YA+ + A+ S + + ++VS NA+
Sbjct: 130 WEAF-RLMKENGLQPDTITYNSFIAAYARAGQKEQAYTLLSNMVEIGLKPNVVSMNAL-- 186
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRM-IQTD------------MQPNTISLSGVLA 270
I+G +G ALE F M + +D +QPN +++ VL+
Sbjct: 187 ----------ISGLHHHGRHADALEAFRYMQVSSDGEAKGWALPGNSIQPNGTTITSVLS 236
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
++ +LGKE+H Y R GL + FV + L+D+YG+ G +
Sbjct: 237 LLTDLRLDRLGKEVHCYAFR----------------SGLISNIFVSSKLVDLYGKTGDV 279
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 156/598 (26%), Positives = 247/598 (41%), Gaps = 174/598 (29%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-----------ELCAFLGM- 61
D PD +A + + C L ++ G QVHA IV V ++ A G+
Sbjct: 99 DGLQPDH--YVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLP 156
Query: 62 ------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---ACSELKDHR 112
F+ + +N SWT+M+ Y G + + LF + + + S L
Sbjct: 157 DIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSG 216
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
D + + ++ +G V +L I +NL++L GK+IH
Sbjct: 217 NWVDSFYLFMEMRSKGIDIVDPFILSSIIGAS--------------ANLAVLGLGKQIHC 262
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ ES L V+N+L+D YAKC + A F ++ Q+ +VSW +++ G A
Sbjct: 263 LVILLG-YESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTA------ 315
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q+G E AL ++RM+ T ++PN ++ G++ AC+
Sbjct: 316 ------QHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSH------------------ 351
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
+ L+S +G +F M K+Y + P+++
Sbjct: 352 --------VGLVS---------------------------KGRYFFNSMIKDYGINPSLQ 376
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNPD----IAEHAARHLFEL 402
Y C++DLL+R+G ++ N +K MPF+P A CN I A HL L
Sbjct: 377 HYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSL 436
Query: 403 EPL-------------------SSGKVHS------------------------FIAGDTS 419
+P S KV F+AG+TS
Sbjct: 437 KPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETS 496
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTS 465
H +I L L +E+KK GY+ + HSE+LA+A+GL+
Sbjct: 497 HPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGI 556
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG L ++KNLR+CGDCH+ K++S K REI++ D R+HHF DG CSC ++W
Sbjct: 557 PGMVLHIVKNLRVCGDCHTVLKFISIIVK----REIVVRDANRYHHFKDGKCSCNNFW 610
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 124/331 (37%), Gaps = 81/331 (24%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCA------------------FLGMFEKMPERNV 70
Q C + + +G ++H H+I G++ C L +F ++P R+
Sbjct: 10 LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69
Query: 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYD 119
SW S++ N +++F + + + KAC+ L + GK V+
Sbjct: 70 ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
I + VK ++DM+ KCG ++ F+ N
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKN------------------- 170
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ +++ YA+ A F K+ K+L+SW A+ I+G Q
Sbjct: 171 ----SISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTAL------------ISGLVQ 214
Query: 240 YGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
G+ + F M + + LS ++ A A + LGK+IH
Sbjct: 215 SGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIH------------- 261
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
L+ + G + FV N+L+DMY +C +
Sbjct: 262 ---CLVILLGYESSLFVSNALVDMYAKCSDV 289
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 37/215 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H H +K + L NN L++ Y KC ++ A F+++ + +SW ++L
Sbjct: 22 GKKLHCHIIKTGIDQCKSLSNN-LINMYGKCGLIQDALNLFNQLPHRDPISWASIL---- 76
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIH 285
T Q L F M + D +QP+ + ++ ACA + K GK++H
Sbjct: 77 --------TANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVH 128
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
A + + V +SL+DMY +CG + G F+ + +
Sbjct: 129 ----------------ATFIVSPVSDDDVVKSSLVDMYAKCGL--PDIGRVVFDSISSKN 170
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
++ + M+ A++G+ D + +KMP +
Sbjct: 171 SIS-----WTAMISGYAQSGRKLDAIQLFQKMPVK 200
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 166/712 (23%), Positives = 268/712 (37%), Gaps = 208/712 (29%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL-------------- 48
+K L+ MD + +Y +F+ C KL +L G +H L
Sbjct: 68 LKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENC 127
Query: 49 ---IVCGVELCAFL-GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+ C C + +F++M +N+ SW ++ Y G E+ + LF + G+
Sbjct: 128 LLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPN 187
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---------- 144
++C +GK ++ ++I + N V+ + +M+++CG
Sbjct: 188 SAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFD 247
Query: 145 -------------------------------RMEMASGEFEEKDFS-------NLSLLKH 166
RM M E +E FS L
Sbjct: 248 GMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDM 307
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G++IH H + K ES++ V L+DFY KC ++ A+ F +I + + VSW+A+
Sbjct: 308 GRQIHSH-IVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSAL----- 361
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
I+GF+Q G E ++ F+ + + N+ + V ACA +G + HG
Sbjct: 362 -------ISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHG 414
Query: 287 YVL-RHHIQLSTGVGIALISIQGLGT--------------GSFVWNSLIDMYGRCG---- 327
+ R + G + G + W ++I Y G
Sbjct: 415 DAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAE 474
Query: 328 -----------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMV 358
++ N E +Y M ++Y ++P ++ Y CM+
Sbjct: 475 ALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMI 534
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSS- 407
D +RAG + L + +MPFEP + C+ + + AA +LF L+P +
Sbjct: 535 DTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTA 594
Query: 408 ------------------------------------------GKVHSFIAGDTSHSLVHK 425
G+VH F+ GD H
Sbjct: 595 GYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEA 654
Query: 426 ISEKL-----------MRLYSEIKKIG---YMKRIPACGHSEKLALAFGLISTSPGSPLR 471
I KL +RL +E + ++ HSEKLA+AFGLIST +P+
Sbjct: 655 IYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDNAPIL 714
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V KNLR C DCH K VS R+I++ D+ RFHHF G CSC DYW
Sbjct: 715 VFKNLRACRDCHEFGKQVSMVTG----RQIVVRDSTRFHHFKSGKCSCNDYW 762
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 157/633 (24%), Positives = 261/633 (41%), Gaps = 194/633 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ I + C +L G +H +I G+ + L +F ++
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEI 252
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
PER+V SWT+++ + GY G +++ M++
Sbjct: 253 PERDVVSWTALITGFVAEGYGS--------------------------GLRIFNQMLAEG 286
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
F P + FI R S+LS + GK++H + K+ L+ +
Sbjct: 287 F-------NPNMYTFISILR-----------SCSSLSDVDLGKQVHAQ-IVKNSLDGNDF 327
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L+D YAK R+L+ A F+++ ++ L +W ++AGYA Q G GE
Sbjct: 328 VGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA------------QDGQGEK 375
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F +M + ++PN +L+ L+ C+++ G+++H ++ V AL+
Sbjct: 376 AVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVD 435
Query: 306 I--------------QGLGTGSFV-WNSLIDMYGRCGAIQK------------------- 331
+ GL + V WN++I Y + G K
Sbjct: 436 MYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVT 495
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG ++F + K Y + P +E Y CMVD+L RAG+F + +F+++M
Sbjct: 496 FIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM 555
Query: 378 PFEP------SSAEPC----NPDIAEHAARHLFELEP--------LSS------------ 407
+ C N + E AA LFELEP LS+
Sbjct: 556 KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVT 615
Query: 408 -----------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
G+VH F++ D SH + +I KL L+ ++ +GY
Sbjct: 616 NVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTP 675
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K+ HSE+LALAF L+STS +R+ KNLR+CGDCH K +S
Sbjct: 676 NTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSIS 735
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ +E+++ D FHHF +G+CSC ++W
Sbjct: 736 EITN----QELVVRDINCFHHFKNGSCSCQNFW 764
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 123/304 (40%), Gaps = 72/304 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL----------IDEGVYKACSELKD 110
+ E+MP ++V W + N +E V LFYL+ I + A + L D
Sbjct: 46 VLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGD 105
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-------------------CGRMEMASG 151
+ G+ ++ + FE + + + M++K R + SG
Sbjct: 106 NHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSG 165
Query: 152 --------------------EFEEKDFSNLSLLK---------HGKEIHPHHLKKDDLES 182
FE ++ +S+LK GK IH +K +
Sbjct: 166 FCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSG-INP 224
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D + NSL++ YAKC A F +I ++ +VSW A++ G+ G YG
Sbjct: 225 DSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG----------YGS 274
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G L F++M+ PN + +L +C+ + LGK++H ++++ + + VG A
Sbjct: 275 G---LRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 331
Query: 303 LISI 306
L+ +
Sbjct: 332 LVDM 335
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
+G+ IH + K ESD+L++N+ + Y K + ++ F + ++L S N +L+G+
Sbjct: 108 YGESIHAC-VCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGF 166
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQ---TDMQPNTISLSGVLAACAQVKGFKLGK 282
D ET + +IQ +PN + +L CA GK
Sbjct: 167 C---------------DTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGK 211
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
IHG V++ G+ S +WNSL+++Y +CG+
Sbjct: 212 AIHGQVIK----------------SGINPDSHLWNSLVNVYAKCGS 241
>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
Length = 829
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 170/703 (24%), Positives = 272/703 (38%), Gaps = 205/703 (29%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEKMPE- 67
D PD VT+ C +L GI++H ++ +E+ A L M++K
Sbjct: 139 DGVRPD--AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSL 196
Query: 68 -------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKA 104
RNV SW+ M G + + G E + F ++ G+ A
Sbjct: 197 SHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSA 256
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------- 157
CS + G+ ++ + FE V V+ M+ +CG +E A F+ D
Sbjct: 257 CSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 316
Query: 158 -------------------------------FSNLSLLKH---------GKEIHPHHLKK 177
+ +SLL G+ +H +
Sbjct: 317 SWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQ-IVN 375
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
D+LE +++V N+L+ YAKC A F K++Q+ ++SW +++ Y E
Sbjct: 376 DELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHL 435
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q LE ++P+ ++ +L ACA V + GK + +
Sbjct: 436 FQ-----QMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDK 490
Query: 298 GVGIALISIQGL------GTGSF----------VWNSLIDMYGRCGAIQK---------- 331
VG A++++ G G F +WN++I +Y + G +
Sbjct: 491 AVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEM 550
Query: 332 -----------------------NEGWRYFEMMKKEY-NMEPAMEQYCCMVDLLARAGQF 367
++G YF M EY N+ ++ + C+ DLL R G+
Sbjct: 551 EGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRL 610
Query: 368 DDTLNFMKKMPFEPSSAE------PC--NPDI--AEHAARHLFELEP------------- 404
+ F++K+P +P + C + D+ A+ A L LEP
Sbjct: 611 KEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIY 670
Query: 405 -----------------------------LSSGK-VHSFIAGDTSHSLVHKISEKLMRLY 434
+ GK +H F GD +H +I E+L +L+
Sbjct: 671 AELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLH 730
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
S++K+ GY+ K HSE+LA+A GLIST G+PLRV KNLR+C
Sbjct: 731 SQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCS 790
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK R+I++ D RFH F DG CSC DYW
Sbjct: 791 DCHTATKLISKIAG----RKIVVRDPTRFHLFKDGKCSCQDYW 829
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/403 (19%), Positives = 157/403 (38%), Gaps = 114/403 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHA---------------HLIVCGVELCAFLG----MF 62
TYA + QRC + L G ++H+ + IV C G F
Sbjct: 43 NATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAF 102
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHR 112
+ + +RN++SWT ++ + + G +E + + +GV +C + + R
Sbjct: 103 DALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLR 162
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF-------------- 158
G ++ ++ + E + V +L+M+ KCG + A F + +
Sbjct: 163 DGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAH 222
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
S+ +L++ G+ IH + ES+
Sbjct: 223 ALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHS-CIALSGFESE 281
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYG 241
LLV N++M Y +C ++ A F + + + +VSWN ML+ Y
Sbjct: 282 LLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAY------------VHND 329
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G+ A++ + RM ++ + ++ +L+AC+ + LG+ +H ++ ++ + VG
Sbjct: 330 RGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG- 385
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
N+L+ MY +CG+ E F+ M++
Sbjct: 386 ---------------NALVSMYAKCGS--HTEARAVFDKMEQR 411
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191
+ VLD+ + R E A+ + + L G++IH +K + L +L++ N ++
Sbjct: 27 IASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIV 86
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
YA C A F ++Q++L SW ++A +A+ G +E L
Sbjct: 87 SMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKE------------TLRALE 134
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311
RM Q ++P+ ++ L +C + + G IH V+ +++ V
Sbjct: 135 RMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVS----------- 183
Query: 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
N+L++MY +CG++ + R F M++ N+
Sbjct: 184 -----NALLNMYKKCGSL--SHAKRVFAKMERTRNV 212
>gi|326524233|dbj|BAK00500.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 166/602 (27%), Positives = 250/602 (41%), Gaps = 145/602 (24%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY 85
A + + C L ++E G ++H L+ GV L L +++ MY G
Sbjct: 123 AAVLRCCSGLGDVESGKRIHGWLLRNGVHLDRVLC-------------NAVLDMYAKSGD 169
Query: 86 YEEIVNLFYLLIDEG------VYKAC---------SELKDHRVGKDVYDYMISIK-FEGN 129
YE F +++ V AC ++L D +D + I N
Sbjct: 170 YELTKRAFRAMVEVDAVSWNIVISACLQSGDILGSTQLFDESPVRDTSSWNTIISGLMRN 229
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSN-------LSLLKHGKEIHPHHLKKDDLES 182
C + + ++ M A EF +S LS+L G+++H L LE+
Sbjct: 230 GCAAKALDRLY----HMARAGVEFNHYTYSTALALAGMLSMLDLGRQLHGRVLT-SALEA 284
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV-----SWNAMLAGYALGGFREEITGF 237
D V +SLMD Y KC +K A F + HL +W+ M+AGY
Sbjct: 285 DAFVRSSLMDMYCKCSSIKTAVLVFER--WSHLTGDMKFAWSTMIAGY------------ 330
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q G E A EFF M+ + + +L+ +AACA + G+ + ++ L T
Sbjct: 331 VQNGREEEAFEFFRLMLCEGVAADQFTLTSAVAACANAGMVEQGR-MFDIAPTKNVALWT 389
Query: 298 ---------GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK----NEGWRYFEMMKKE 344
G G I + T + + + + G A +EG +F++M++E
Sbjct: 390 SMLCSYASHGKGRMAIKLFNRMTAEKIKPNEVTLVGVLSACSHGRLVSEGEHFFKLMQEE 449
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS--------AEPCNPDI--AEH 394
Y + P++E Y CMVDL RAG D F+ + + S A + D+ A+
Sbjct: 450 YGIVPSIEHYNCMVDLYGRAGLLDKANIFINENKIKHESIVWKTLLSACRVHKDMEHAKL 509
Query: 395 AARHLFELEPLSSGK-------------------------------------------VH 411
A+ L +LE +G VH
Sbjct: 510 ASESLIQLEQCDAGSYVMLSNMYATHSKWRDTSKLRSLMLERGVRKQPGRSWIHLKNTVH 569
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH--------------SEKLAL 457
+F+AGD +H +I L +L +K++GY RI H SEKLA+
Sbjct: 570 TFVAGDAAHPRSSEIYTYLEKLMERLKELGYTSRIDLVAHDVEEEQRETALKFHSEKLAM 629
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFG+IST G+PLR+ KNLR+C DCH KYVS+A +REI++ D YRFHHF D C
Sbjct: 630 AFGIISTPSGTPLRIFKNLRICVDCHEAIKYVSRAT----DREIVVRDLYRFHHFKDAKC 685
Query: 518 SC 519
SC
Sbjct: 686 SC 687
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 27/116 (23%)
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ +W A++AG A G ++ DG A F + + PN L+ VL
Sbjct: 80 KRSAAAWTAVIAGCARAG---------RHADGMGA--FAEMLAEGGAAPNAFVLAAVLRC 128
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
C+ + + GK IHG++LR+ + L + N+++DMY + G
Sbjct: 129 CSGLGDVESGKRIHGWLLRNGVHLD----------------RVLCNAVLDMYAKSG 168
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/486 (27%), Positives = 205/486 (42%), Gaps = 133/486 (27%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K S +S L+ G+++H + LK S V +L++FYAKC + +A F +I
Sbjct: 97 FVLKACSIVSALEEGQQVHANVLK-SGFGSSPFVETALVNFYAKCEDIVLASKVFDEITD 155
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++LV+W+ M++GYA G E AL F M + + P+ +++ V++AC
Sbjct: 156 RNLVAWSTMISGYARIGLVNE------------ALGLFRDMQKAGVVPDEVTMVSVISAC 203
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS--------------------------- 305
A GK +H Y+ + I+ + AL++
Sbjct: 204 AASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWS 263
Query: 306 --IQGLGTGSFVWNSLIDMYGRCGAIQK-------------------NEGWRYFEMMKKE 344
I GL ++L + + A K +EG RY+ M E
Sbjct: 264 SMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSML-E 322
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEH 394
+ + P+ME Y CMVDLL RA +D ++ MP P+ + N D +E
Sbjct: 323 FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEV 382
Query: 395 AARHLFELEPLSS-------------------------------------------GKVH 411
A+ L ELEP ++ G VH
Sbjct: 383 VAQRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVH 442
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGHSEKLAL 457
F+ GD SH ++ E L + + +G+ I C HSE+LA+
Sbjct: 443 EFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAI 502
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
A+GL+ T +R++KNLR+CGDCH TK +S E REII+ D RFH FV+G+C
Sbjct: 503 AYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISA----EYRREIIVRDRVRFHKFVNGSC 558
Query: 518 SCGDYW 523
SC D+W
Sbjct: 559 SCRDFW 564
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 111/275 (40%), Gaps = 43/275 (15%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
FS+I++ ++ SWN+M+ G + +Q E + F + + PNT +++
Sbjct: 47 FSQIQRPNIFSWNSMIRGCSQ----------SQTPSKEPVILFRKMVRRGYPNPNTFTMA 96
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF------ 314
VL AC+ V + G+++H VL+ S V AL++ L + F
Sbjct: 97 FVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDR 156
Query: 315 ---VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD-- 369
W+++I Y R G + NE F M+K + P ++ A +G D
Sbjct: 157 NLVAWSTMISGYARIGLV--NEALGLFRDMQKA-GVVPDEVTMVSVISACAASGALDTGK 213
Query: 370 -TLNFMKKMPFEPSSAEPCNPDIAEHA-------ARHLFELEPLSSGKV-HSFIAGDTSH 420
++ K E + E + +A A+ +F+ P+ K S I G +
Sbjct: 214 WVHAYINKQLIE-TDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAIN 272
Query: 421 SLVHKISEKLMRLYSEIKK---IGYMKRIPACGHS 452
L E+ R+ K + ++ + AC HS
Sbjct: 273 GLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHS 307
>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 721
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 219/510 (42%), Gaps = 142/510 (27%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+M K +++M + ++L L G++ H L K + V + L+DFY+KC
Sbjct: 230 EMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK-LIKAGFHQNSHVGSGLIDFYSKC 288
Query: 198 ---RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
+ + F +I LV WN M++GY++ EE++ E A++ F +M
Sbjct: 289 GGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMN---EELS--------EEAVKSFRQMQ 337
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS-TGVGIALISI------- 306
+ +P+ S V +AC+ + K+IHG ++ HI + V ALIS+
Sbjct: 338 RIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNL 397
Query: 307 -------------------------------------------QGLGTGSFVWNSLIDMY 323
G+ + +++
Sbjct: 398 QDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSAC 457
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
CG + +EG YF MK+ + +EP E Y CM+DLL RAG+ ++ F+ MP++P S
Sbjct: 458 AHCGKV--DEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGS 515
Query: 384 AE------PC----NPDIAEHAARHLFELEPLSSG------------------------- 408
C N +AE AA L ++PL++
Sbjct: 516 VAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSM 575
Query: 409 ------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------- 443
K H F+A D SH ++ +++E L + ++KK+GY+
Sbjct: 576 RGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ + HSEKLA+AFGL+ST G L V+KNLR+CGDCH+ K++S
Sbjct: 636 VKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVA 695
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ DN RFH F DG CSCGDYW
Sbjct: 696 G----REIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 62/260 (23%)
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
+D GK ++ + + + ++++ KCGR+ A F +
Sbjct: 22 RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTE----------- 70
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E ++ N ++ YAK + +A F +I Q VS+N +++GYA
Sbjct: 71 ------------EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADA 118
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
RE A+ F RM + + + +LSG++AAC L K++H +
Sbjct: 119 --RETF----------AAMVLFKRMRKLGFEVDGFTLSGLIAACCD--RVDLIKQLHCFS 164
Query: 289 LRHHIQLSTGVGIALISIQGLG----------------TGSFVWNSLIDMYGRCGAIQKN 332
+ + V A ++ G WNS+I YG Q
Sbjct: 165 VSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYG-----QHK 219
Query: 333 EGWR----YFEMMKKEYNME 348
EG + Y EM+ K + ++
Sbjct: 220 EGAKALALYKEMIFKGFKID 239
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 133/487 (27%), Positives = 206/487 (42%), Gaps = 137/487 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS LK GK +H H + D V +L+ FY+KC ++ A F ++ +K +
Sbjct: 115 KSCADLSALKIGKGVHCHAVV-SGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSV 173
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN++ ++GF Q G E A+ F +M ++ +P++ + +L+ACAQ
Sbjct: 174 VAWNSL------------VSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQT 221
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LG-----------TGSFVWNSLI 320
LG +H Y++ + ++ +G ALI++ +G T W ++I
Sbjct: 222 GAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281
Query: 321 DMYGR-----------------CGAIQKN-----------------EGWRYFEMMKKEYN 346
YG CG+I N +G ++ M + Y
Sbjct: 282 SAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYR 341
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAE 393
+ P +E + C+VD+L RAG D+ F++++ ++ P N D+
Sbjct: 342 LIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGV 401
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
A+ L LEP + G K
Sbjct: 402 EIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKT 461
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
+ F GD SH +I L L S K+IGY K HSEKLA
Sbjct: 462 YLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLA 521
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ T S + V+KNLR+C DCHS KY+S R+ II+ D RFHHF +G+
Sbjct: 522 VAFGLLKTVD-SAITVVKNLRICEDCHSAFKYISIVSNRQ----IIVRDKLRFHHFQNGS 576
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 577 CSCLDYW 583
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+N T+ + + C L+ L++G VH H +V G L ++
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEA 160
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F++MPE++V +W S++ + G E+ + +FY + + G + AC++
Sbjct: 161 ARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQ 220
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+G V+ Y++S + N + +++++ +CG + A F++ +N++
Sbjct: 221 TGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVA 275
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 65/141 (46%), Gaps = 26/141 (18%)
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ ++ RM+ +++ P+ + + V+ +CA + K+GK +H + + +
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAV----------------V 135
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
G G ++V +L+ Y +CG ++ + F+ M E ++ + +V + G
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDMEAAR--QVFDRMP-----EKSVVAWNSLVSGFEQNGL 188
Query: 367 FDDTLNF---MKKMPFEPSSA 384
+D + M++ FEP SA
Sbjct: 189 AEDAIRVFYQMRESGFEPDSA 209
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 40/174 (22%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD + T+ + C + + LG VH +++ G+++ LG
Sbjct: 206 PD--SATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAR 263
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSEL 108
+F+KM E NV +WT+M+ Y GY ++ V+LF + D+ V AC+
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHA 323
Query: 109 KDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
G+ VY Y + E + C ++DM + G ++ A ++ D
Sbjct: 324 GLVEDGRSVYKRMTESYRLIPGVEHHVC----IVDMLGRAGFLDEAYRFIQQLD 373
>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
Length = 795
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 169/706 (23%), Positives = 272/706 (38%), Gaps = 212/706 (30%)
Query: 9 LLQSMDLT-NPDECTVTYALIFQRCPKLNNLELGIQVHAHLI-VCGVELCAFL------- 59
L + MDL NP V Y + C + LE G +H+ + G++L L
Sbjct: 111 LYKRMDLQPNP----VVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTM 166
Query: 60 -----------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-------GV 101
+FE+M R+V SW +M+ Y G++EE + L+ + E V
Sbjct: 167 YAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSV 226
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS----------- 150
ACS L G+ ++ + S E + ++ +L M+ +C ++ A+
Sbjct: 227 LSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 286
Query: 151 -------GEFEEKD--------FSNLSL----------------------LKHGKEIHPH 173
F E D +S + L L+ G+ +H
Sbjct: 287 VSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQ 346
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L + + L+ +L+D Y L A F +I+ + W ++ GY+ G R
Sbjct: 347 ILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTG 405
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+ LE + M T P T I S V++ACA + F ++ H +
Sbjct: 406 V------------LELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADG 453
Query: 293 IQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGRCG---------- 327
+ + +L+++ + W +LI Y + G
Sbjct: 454 MISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYK 513
Query: 328 -----------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
A + +G + F ++ +Y M P + Y C++DLL+RA
Sbjct: 514 EMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRA 573
Query: 365 GQFDDTLNFMKKMPFEPSS--------AEPCNPDI--AEHAARHLFELEPLS-------- 406
G+ D + MP EP+ A + D+ A HAA + +L+P+
Sbjct: 574 GRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLS 633
Query: 407 -----------------------------------SGKVHSFIAGDTSHSLVHKISEKLM 431
+ ++H F GD SH +I +L
Sbjct: 634 NVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQ 693
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
RL +IK+ GY+ K + HSEKLA+AFGLI+T+PG+ LR+ LR
Sbjct: 694 RLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLR 753
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCHS K++S + REII+ D+ RFH F DG CSCGDYW
Sbjct: 754 ICHDCHSAVKFISAIAR----REIIVRDSSRFHKFRDGQCSCGDYW 795
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 165/402 (41%), Gaps = 84/402 (20%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
N+ LG ++ CG + + F+ + +N +SW SM+ Y G+Y ++L+ +
Sbjct: 57 NVFLGNEIVRAYGKCG-SVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM 115
Query: 97 -------IDEGVYKACSELKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRMEM 148
+ V AC+ +K GK ++ + K + + ++ +L M+ KCG +E
Sbjct: 116 DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLED 175
Query: 149 A------------------------SGEFEE--------------KDF-------SNLSL 163
A SG FEE + F SNL L
Sbjct: 176 AKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGL 235
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G++IH + E DL + N+L+ YA+C+ L A F ++ ++ +VSW+AM+A
Sbjct: 236 LDQGRKIHA-LISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIA 294
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+A +E A+EF+S+M ++PN + + VL ACA V + G+
Sbjct: 295 AFAETDLFDE------------AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 342
Query: 284 IHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGA 328
+H +L + +++ G AL+ + Q +W LI Y + G
Sbjct: 343 VHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQG- 401
Query: 329 IQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+ + MK + Y C++ A G F D
Sbjct: 402 -HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADA 442
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 37/201 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+++ + N ++ Y KC + A F I +K+ SW +ML YA Q G
Sbjct: 56 ANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYA------------QNG 103
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ + RM D+QPN + + VL ACA +K + GK IH +
Sbjct: 104 HYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHSRI------------- 147
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+GL + NSL+ MY +CG+++ + R FE M ++ + M+
Sbjct: 148 --SGTKGLKLDVILENSLLTMYAKCGSLE--DAKRLFERMSGR-----SVSSWNAMIAAY 198
Query: 362 ARAGQFDDTLNFMKKMPFEPS 382
A++G F++ + + M EPS
Sbjct: 199 AQSGHFEEAIRLYEDMDVEPS 219
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 155/590 (26%), Positives = 236/590 (40%), Gaps = 202/590 (34%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFE 63
++T+ C + L LG Q+HA ++ CG + L F G +F
Sbjct: 209 SITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFN 268
Query: 64 KMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
++ R NV SW SM+ V + EE +AC R + D+MI
Sbjct: 269 RIGNRKNVVSWCSMLAAL-VQNHEEE--------------RACMVFLQARKEVEPTDFMI 313
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
S VL + G +E+ G+ +H +K +E
Sbjct: 314 S-----------SVLSACAELGGLEL------------------GRSVHALAVKAC-VED 343
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ V ++L+D Y KC ++ A FS++ +++LV+WNAM+ GYA GD
Sbjct: 344 NIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYA------------HQGD 391
Query: 243 GETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ AL F M ++P+ ++L +L+ C++V + G +I
Sbjct: 392 IDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQI---------------- 435
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
FE M+ Y +EP E + C+VDL
Sbjct: 436 -------------------------------------FESMRLNYGIEPGAEHFACVVDL 458
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG-- 408
L R+G D F++ M +P+ + C ++ + AA LFEL+ + SG
Sbjct: 459 LGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNH 518
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
++H F A D+SH +I
Sbjct: 519 VVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQ 578
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
L +L +K+ GY+ K HSEK+ALAFGLI+ G P+R+
Sbjct: 579 AMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGVPIRIT 638
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K++S R REII+ DN+RFH F DG CSC DYW
Sbjct: 639 KNLRICGDCHSAIKFIS----RIVGREIIVRDNHRFHRFKDGCCSCKDYW 684
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 82/208 (39%), Gaps = 42/208 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK+IH LK + D+ V S D Y K + A F ++ Q++L +WNA
Sbjct: 127 GKQIHGLALK-GGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAY----- 180
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
I+ Q A+ F + +PN+I+ L AC + LG+++H
Sbjct: 181 -------ISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHA 233
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+++R G V N LID YG+CG I E F + N
Sbjct: 234 FIVR----------------CGYKEDVSVANGLIDFYGKCGDIVSAE--MVFNRIGNRKN 275
Query: 347 ------MEPAM-----EQYCCMVDLLAR 363
M A+ E+ CMV L AR
Sbjct: 276 VVSWCSMLAALVQNHEEERACMVFLQAR 303
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 28/161 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ IH H ++ ++N L++ Y+K L A S + +V+W ++
Sbjct: 25 GRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSL----- 79
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
I+G AL F+ M + ++QPN + V A A V+ GK+IHG
Sbjct: 80 -------ISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHG 132
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
L+ G+ FV S DMY + G
Sbjct: 133 LALK----------------GGMIYDVFVGCSCFDMYCKTG 157
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 240/578 (41%), Gaps = 175/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R++ SW +M+G G E ++L L+ R G ++
Sbjct: 121 VFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL--------------LQMQREGTPFSEF 166
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
IS AC + L S LL H I K +
Sbjct: 167 TISSVL--CACAAKCAL---------------------SECQLL-HAFAI------KAAM 196
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ ++ V +L+D YAKC +K A C F + + +V+W++M AGY E+
Sbjct: 197 DLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ------- 249
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F + +T ++ + +S V+ ACA + GK+++ + + + V
Sbjct: 250 -----ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVA 304
Query: 301 IALISIQGLGTG---------------SFVWNSLIDMYGR-------------------- 325
+LI + G +WN++I R
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364
Query: 326 ------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
CG + +G +YF++M KE+++ P + Y CMVD L+RAGQ + +
Sbjct: 365 PNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYD 424
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
+ K+PF S++ C N ++AE AA+ LF++EP +SG
Sbjct: 425 LISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGK 484
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
KVH F+ G+ +H + +I KL + E++K
Sbjct: 485 WDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQK 544
Query: 440 IGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+GY +K+ HSEKLA GL+ P +P+R++KNLR+CGDCHS
Sbjct: 545 LGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K SK R++I+ D RFHHF +G CSCGD+W
Sbjct: 605 MKLASKF----FCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL GK H L L++DLL +N L++ Y+KC + A F ++ + LVSWN M
Sbjct: 79 LLLQGKACHAQILLMG-LKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTM- 136
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I TQ G+ AL+ +M + + ++S VL ACA +
Sbjct: 137 -----------IGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQ 185
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+H + ++ + L+ FV +L+D+Y +CG ++
Sbjct: 186 LLHAFAIKAAMDLNV----------------FVATALLDVYAKCGLMK 217
>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 136/475 (28%), Positives = 199/475 (41%), Gaps = 132/475 (27%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L GK IH +K L ++ V NSL++ Y KC L+ A C F + + LVSWN+M+A
Sbjct: 156 LDVGKCIHGIAVKSGML-LEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVA 214
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
+ G E + +F M + + + ++ +L AC + KL +
Sbjct: 215 VH------------VHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEA 262
Query: 284 IHGYVLRHHIQLSTGVGIALISIQG-LGTGS--------------FVWNSLIDMYGRCG- 327
+HGY+L + + + AL+ + LGT S W +++ Y G
Sbjct: 263 VHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGR 322
Query: 328 ---AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
AI+ EG YF++M + Y +E +E Y
Sbjct: 323 GREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYS 382
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL R+G +D +K MP EP+S C N ++ + A LF L+P
Sbjct: 383 CMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPS 442
Query: 406 SS-------------------------------------------GKVHSFIAGDTSHSL 422
S K+H F+ GD SH
Sbjct: 443 DSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPD 502
Query: 423 VHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGS 468
+I KL L + +++G+ + HSEKLA+AFGL+ T+ G
Sbjct: 503 TEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGM 562
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PL + KN+R+CGDCH K +S EK R II+ D RFHHF +G CSCGDYW
Sbjct: 563 PLIITKNIRICGDCHGFAKLISLIEK----RTIIIRDTKRFHHFTNGLCSCGDYW 613
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 30/175 (17%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+ + L+ Y + K A F ++ K LVSWN++ I+GF++ D
Sbjct: 74 FIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSL------------ISGFSRRADLG 121
Query: 245 TALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
L RM + ++PN +++ V++ACA V +GK IHG ++ + L V +L
Sbjct: 122 ICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSL 181
Query: 304 ISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
I++ +G+ S V WNS++ ++ G +K G YF MM++
Sbjct: 182 INLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIG--YFIMMRR 234
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 158/612 (25%), Positives = 240/612 (39%), Gaps = 186/612 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ + I + + V V F++MP ++ SW +M+ Y G E
Sbjct: 115 LFDEIPEPDTFSYNIMLSCY--VRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEME 172
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
+ LFY ++ E N ++ +I+CG +E
Sbjct: 173 KARELFYSMM-----------------------------EKNEVSWNAMISGYIECGDLE 203
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
AS H K ++ +++ Y K + +++A F
Sbjct: 204 KAS-----------------------HFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMF 240
Query: 208 SKIK-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
+ K+LV+WNAM++GY + E L+ F M++ ++PN+ LS
Sbjct: 241 KDMTVNKNLVTWNAMISGY------------VENSRPEDGLKLFRAMLEEGIRPNSSGLS 288
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ----GLGTG---------- 312
L C+++ +LG++IH V + + +LIS+ LG
Sbjct: 289 SALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKK 348
Query: 313 -SFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYF 338
WN++I Y + G K N G YF
Sbjct: 349 DVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYF 408
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
E M ++Y +EP + Y CMVDLL RAG+ ++ L ++ MPF P +A C N
Sbjct: 409 ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKN 468
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++AE AA L +L ++
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGH 451
KVH F + D H + I +KL L ++K GY K H
Sbjct: 529 IRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWH 588
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFG I GS ++V KNLR+CGDCH K++S+ EK REII+ D RFHH
Sbjct: 589 SEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEK----REIIVRDTTRFHH 644
Query: 512 FVDGACSCGDYW 523
F DG+CSCGDYW
Sbjct: 645 FKDGSCSCGDYW 656
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 93/284 (32%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ H L + E D N ++ Y + + A F ++ K SWN M+ GYA G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169
Query: 230 FREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
E+ I+G+ + GD E A FF + GV+A
Sbjct: 170 EMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF----------KVAPVRGVVA 219
Query: 271 ACAQVKGFKLGKE-----------------------IHGYV---------------LRHH 292
A + G+ K+ I GYV L
Sbjct: 220 WTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG 279
Query: 293 IQL-STGVGIALI------------SIQGLGTGSFVWN------SLIDMYGRCGAIQKNE 333
I+ S+G+ AL+ I + + S + N SLI MY +CG + +
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGEL--GD 337
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
W+ FE+MKK+ + + M+ A+ G D L ++M
Sbjct: 338 AWKLFEVMKKK-----DVVAWNAMISGYAQHGNADKALCLFREM 376
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 213/507 (42%), Gaps = 146/507 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +NL + HG+++H H + + +D +V +SL+D YAKC L A F I+ K+
Sbjct: 113 KACANLGSIDHGRQVHCHFIV-SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNT 171
Query: 216 VSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQT 256
+SW AM++GYA G +EE I+GF Q G G A F+ M +
Sbjct: 172 ISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231
Query: 257 DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ + + LS ++ ACA + G+++HG V+ + ALI + +
Sbjct: 232 RVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIA 291
Query: 316 ---------------WNSLIDMYGRCGAIQK----------------------------- 331
W SLI + G +K
Sbjct: 292 AKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 351
Query: 332 ----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP- 386
+G F+ M K+Y + P+++ Y C++DLL R+G D+ N + MPF P EP
Sbjct: 352 VGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD--EPT 409
Query: 387 -------CNPD--------IAEH-------------------------------AARHLF 400
C IA+H A R L
Sbjct: 410 WAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLG 469
Query: 401 ELE----PLSSG-----KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM------- 443
E+E P S + F AG+TSH L I L +L E++ + GY+
Sbjct: 470 EMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWIL 529
Query: 444 -------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
K HSE+ A+A+GL+ PG+P+R++KNLR+CGDCH K++S+
Sbjct: 530 HDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT--- 586
Query: 497 REREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D R+HHF G CSC D+W
Sbjct: 587 -EREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 81/331 (24%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNV 70
Q C + L +HAH++ G+ C L +F++MP R+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 71 FSWTSMMGMYN-------VLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDVYD 119
+W S++ N L + + + L D+ V+ KAC+ L G+ V+
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ I ++ + VK ++DM+ KCG + A F+ N
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKN------------------- 170
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ +++ YAK + A F + K+L SW A+ I+GF Q
Sbjct: 171 ----TISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL------------ISGFVQ 214
Query: 240 YGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
G G A F+ M + + + + LS ++ ACA + G+++HG V
Sbjct: 215 SGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV---------- 264
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
IAL G + F+ N+LIDMY +C +
Sbjct: 265 --IAL----GFDSCVFISNALIDMYAKCSDV 289
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K +H H +K ++ L N +L++ Y KC A F ++ + ++W ++L
Sbjct: 19 LTTAKALHAHIVKLGIVQCCPLAN-TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL- 76
Query: 224 GYALGGFREEITGFTQYG-DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
T Q G+T F S + ++P+ S ++ ACA + G+
Sbjct: 77 -----------TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR 125
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H + + + V +SL+DMY +CG + N F+ ++
Sbjct: 126 QVHCHFI----------------VSEYANDEVVKSSLVDMYAKCGLL--NSAKAVFDSIR 167
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + MV A++G+ ++ L + +P +
Sbjct: 168 VKNTI-----SWTAMVSGYAKSGRKEEALELFRILPVK 200
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/605 (23%), Positives = 243/605 (40%), Gaps = 192/605 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KM +R++ SW M+G Y + G + E + L+ L EG +
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKR----------------- 306
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
K + + C S++ L G+ +H H L++ L
Sbjct: 307 -----------TKATFVSILGAC---------------SSVKALAQGRLVHSHILERG-L 339
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
+S++ V +L++ YAKC L+ A F+ +K + V+W+ ++ YA G+ ++
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399
Query: 234 ---------------ITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKG 277
IT + Q G A++ F M ++P+ ++ VL ACA +
Sbjct: 400 FDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALIS-------------------------------- 305
K +H + ++ + V LI+
Sbjct: 460 LSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAA 519
Query: 306 ------------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
++G+ + S++ + G+++ +GWRYF M + + +
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE--QGWRYFTDMAELHAL 577
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAAR 397
P + + MVDLL R+G+ D ++ MPFEP C ++ E AA
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637
Query: 398 HLFELEPLSS-------------------------------------------GKVHSFI 414
++EL+P S+ GK+H F
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
+G H +I E+L RL+ ++ GY+ A HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757
Query: 461 LIST-SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF-VDGACS 518
L+S+ G P+RV+KNLR+C DCH+ TK+++ R R+II+ D RFH F DG CS
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIA----RIAGRDIIVRDCNRFHRFSSDGKCS 813
Query: 519 CGDYW 523
CGDYW
Sbjct: 814 CGDYW 818
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/341 (21%), Positives = 134/341 (39%), Gaps = 93/341 (27%)
Query: 61 MFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+FE M +RNV SW +M+ Y G+ E + L++ + +G V ACS L
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------- 155
G+++++ + + + ++ M+ + G + A F+
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180
Query: 156 ----------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLE 181
FS +L G++IH + + +
Sbjct: 181 LAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAE-IVANGFD 239
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+DL+V +L++ Y KC A F K+K++ +VSWN M+ Y L G
Sbjct: 240 TDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN------------G 287
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
D ALE + ++ + + +L AC+ VK G+ +H ++L
Sbjct: 288 DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILE----------- 336
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+GL + V +L++MY +CG+++ E + F MK
Sbjct: 337 -----RGLDSEVAVATALVNMYAKCGSLE--EARKVFNAMK 370
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 36/178 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLAG 224
G+ +H ++ E D +V N+L+ Y KC L A F + +Q+++VSWNAM+A
Sbjct: 26 GRALH-ERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAA 84
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
YA Q G AL + RM + + ++ VL AC+ + G+EI
Sbjct: 85 YA------------QNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---GREI 129
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
H V L S Q L N+L+ MY R G++ + R F+ ++
Sbjct: 130 HNRVFYS----------GLDSFQSLA------NALVTMYARFGSV--GDAKRMFQSLQ 169
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/611 (25%), Positives = 250/611 (40%), Gaps = 195/611 (31%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
PDE VT +F C +L ++ +G Q H ++ G LG EK + +
Sbjct: 114 VKPDE--VTLVCLFGGCARLGDVVVGAQGHGCMVKMG------LGGVEK-------ACNA 158
Query: 76 MMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKDHRVGKDVYDYM---- 121
+M MY G E +FY +I +GV ++ + R G+ V+D M
Sbjct: 159 VMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRS----EGVRNGRVVFDEMPERN 214
Query: 122 -------------ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
+ E A V+ + D+ ++ + + S +L + G+
Sbjct: 215 EVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMM---GR 271
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+H + LK + E +++V +++D YAKC + +A F K+ Q+++VSWNAML+G A+
Sbjct: 272 WVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAM- 330
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+G G AL+ F +M + + +P+ ++ + VL+AC+
Sbjct: 331 -----------HGLGRAALDIFPQMFK-EAKPDDVTFTSVLSACSH-------------- 364
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+ L+D +G YF ++ Y +
Sbjct: 365 ----------------------------SGLVD-----------QGCFYFGNLESVYGIT 385
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARH 398
P +E Y CMVDLL RAG+ ++ +++MP P+ C+ + EH +
Sbjct: 386 PKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQE 445
Query: 399 LFELEPLSS-------------------------------------------GKVHSFIA 415
L +L+P ++ G+VH F A
Sbjct: 446 LVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSA 505
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY-----MKRIPAC------------------GHS 452
GD SH ++ L + ++ GY ++ C HS
Sbjct: 506 GDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHS 565
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+ FGLIST PG PL + KNLR+C DCHS K VSK REI++ D RFH F
Sbjct: 566 EKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKI----YNREIVIRDRNRFHCF 621
Query: 513 VDGACSCGDYW 523
+G+CSC DYW
Sbjct: 622 KEGSCSCCDYW 632
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH--LVSWNAMLAGYALGGFREEITGFTQY 240
+ ++N+L+ FYA C A F +I H V W ++ F ++
Sbjct: 49 ETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGC------------FVRH 96
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ AL F M + ++P+ ++L + CA++ +G + HG +++
Sbjct: 97 NVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVK---------- 146
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
GLG N+++DMY + G + E R F MK +
Sbjct: 147 ------MGLGGVEKACNAVMDMYAKSGLM--GEARRVFYEMKGQ 182
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 143/591 (24%), Positives = 245/591 (41%), Gaps = 206/591 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHA------------------HLIVC------GVELCAFL 59
TY + + C + NL LG VH H+ C G+E
Sbjct: 12 TYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFAR-- 69
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++M + + SW++M+G Y +G + +NLF + +GV C +
Sbjct: 70 KVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGV---CPD----------EI 116
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
M+S+ +AC + L L+ GK + + ++K+
Sbjct: 117 TMVSVL---SAC---------------------------TGLGALELGKWVESY-VEKER 145
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ ++ ++N+L+D +AKC + A F ++++++VSW ++ I G
Sbjct: 146 VQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSV------------IGGLAM 193
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+G G A+ F M+++ + P+ + G+L+AC+
Sbjct: 194 HGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSH------------------------- 228
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
+ L+D +G RYF+ M+K++++ P +E Y CMVD
Sbjct: 229 -----------------SGLVD-----------KGKRYFDSMRKDFSIVPKIEHYGCMVD 260
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLS--- 406
+L RAG + L F+++MP +P+ C + E R L EP+
Sbjct: 261 MLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESN 320
Query: 407 ----------------------------------------SGKVHSFIAGDTSHSLVHKI 426
+++ F+AGD SH+ +I
Sbjct: 321 YVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEI 380
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
E + + E+K+ GYM K HSEKLA+AF L++T PG+ +R+
Sbjct: 381 YEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRI 440
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLR+C DCHS +K++SK REI++ D RFHHF +G CSC D+W
Sbjct: 441 VKNLRVCDDCHSASKFISKI----YNREIVVRDRNRFHHFKNGLCSCRDFW 487
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 27/132 (20%)
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M++ PN + VL ACA + LGK +HG V++ G G
Sbjct: 1 MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKF----------------GFGDE 44
Query: 313 SFVWNSLIDMYGRC----GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
V N+L+ MY C G I+ + F+ M K ++ + M+ R G+
Sbjct: 45 VNVQNTLVHMYCCCRGGEGGIEFAR--KVFDEMYKSDSV-----SWSAMIGGYVRVGRSS 97
Query: 369 DTLNFMKKMPFE 380
D +N ++M +
Sbjct: 98 DAINLFREMQIK 109
>gi|357111099|ref|XP_003557352.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 685
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 135/446 (30%), Positives = 200/446 (44%), Gaps = 101/446 (22%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF---SKIKQKHLVS 217
LSL G+++H L +++D V +SLMD Y KC ++ A F S++ +
Sbjct: 258 LSLQDLGRQLHGRVLTAA-VDTDAFVRSSLMDMYCKCGSMETAVLIFDSWSQLTGDMNFA 316
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W+AM+AGY G EE A EFF M++ + + +L+ +AACA
Sbjct: 317 WSAMVAGYVQNGREEE------------AFEFFRSMLREGVAAHQFTLTSAIAACANAGM 364
Query: 278 FKLGKEIHGYVLRHHIQLST---------GVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
+ G+ I ++ L T G G I + T + + I + G A
Sbjct: 365 VEQGR-IFDRACAKNVALWTSMLCSYASHGKGRMAIELFNRMTAEKITPNEITLVGVLSA 423
Query: 329 IQK----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
NEG +F++M+ EY + P++E Y CMVDL RAG NF+K+ + +
Sbjct: 424 CSHGRLVNEGDHFFKLMQDEYGIVPSIEHYNCMVDLYGRAGMLYKAHNFIKENNIKHEAI 483
Query: 385 ------EPC----NPDIAEHAARHLFELEPLSSGK------------------------- 409
C + + A+ A+ +L +LE +G
Sbjct: 484 VWKTLLSACRLHKHMEYAKLASENLIQLEECDAGSYVMLSNVYATHSKWLDTSKLRSSMR 543
Query: 410 ------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH 451
+H+F+AGDT+H +I L +L +K +GY R H
Sbjct: 544 ERRVWKQPGRSWIHLKNIMHTFVAGDTAHPRSAEIYAYLEKLMERLKDLGYTSRTDLVAH 603
Query: 452 --------------SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRER 497
SEKLA+AFG+IST G+PLR+ KNLR+C DCH KYVS+A
Sbjct: 604 DVEEEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCVDCHEAIKYVSQAT---- 659
Query: 498 EREIIMIDNYRFHHFVDGACSCGDYW 523
+REI++ D YRFHHF D CSC D+W
Sbjct: 660 DREIVVRDLYRFHHFKDAKCSCEDFW 685
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 36/191 (18%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L ++ GK IH L+ + D+++ N+++D YAKC + F + + VSW
Sbjct: 124 AGLRDMESGKCIHGWMLR-NGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSW 182
Query: 219 NAMLA-----GYALG--------------GFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
N +++ G LG + I+G + G AL+ RM + +
Sbjct: 183 NIVISACMQNGDILGSMQLFDVSPLRDTSSWNTVISGLMRNGCAAKALDCLYRMARARVV 242
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
N + S LA + LG+++HG VL + T +FV +SL
Sbjct: 243 FNHYTYSTALALAGMLSLQDLGRQLHGRVL----------------TAAVDTDAFVRSSL 286
Query: 320 IDMYGRCGAIQ 330
+DMY +CG+++
Sbjct: 287 MDMYCKCGSME 297
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
+W A +AG A G ++ DG +A F + +PN L+ VL CA ++
Sbjct: 79 AWTAFIAGCARSG---------RHMDGLSA--FTEMRAKGGAEPNAFVLAAVLRCCAGLR 127
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
+ GK IHG++LR+ L + N+++DMY +CG + + R
Sbjct: 128 DMESGKCIHGWMLRNGAHLDV----------------VLCNAVLDMYAKCGDYECTK--R 169
Query: 337 YFEMMKK 343
F+ M K
Sbjct: 170 AFKAMTK 176
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 157/578 (27%), Positives = 234/578 (40%), Gaps = 183/578 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE+ P R+VF+WT+M+ Y G +E +F E+ R + Y+
Sbjct: 241 LFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF------------DEMPQKR--EMSYNV 286
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
MI+ G A KR M+M FEE F N+
Sbjct: 287 MIA----GYAQYKR-----------MDMGRELFEEMPFPNIGSW---------------- 315
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
N ++ Y + L A F + Q+ VSW A++AGYA G EE
Sbjct: 316 -------NIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEE------- 361
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ M + N + L+ACA + +LGK++HG V+R + VG
Sbjct: 362 -----AMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVG 416
Query: 301 IALISI--------------QGLGTGSFV-WNSLIDMYGRCG---------------AIQ 330
AL+ + QG+ V WN+++ Y R G ++
Sbjct: 417 NALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVK 476
Query: 331 KNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+E G YF M K+Y + P + Y CM+DLL RAG ++ N
Sbjct: 477 PDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQN 536
Query: 373 FMKKMPFEPSSAE----------PCNPDIAEHAARHLFELEPLSSG-------------- 408
++ MPFEP +A N ++ E AA +F++EP +SG
Sbjct: 537 LIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGR 596
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K+H+F GD H +I L L ++K
Sbjct: 597 WVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKH 656
Query: 440 IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ K+ HSEKLA+AFG+++ G P+RV+KNLR+C DCH+
Sbjct: 657 EGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNA 716
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK R II+ D++R+HHF +G CSC DYW
Sbjct: 717 IKHISKIVG----RLIIVRDSHRYHHFSEGICSCRDYW 750
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 148/384 (38%), Gaps = 91/384 (23%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P N++ + +L L L F+KMP +++FSW M+ Y
Sbjct: 55 VFDAMPLRNSVSYNAMISGYLRNAKFSLARDL--FDKMPHKDLFSWNLMLTGYARNRRLR 112
Query: 88 EIVNLFYLLIDEGVYKACSELKDH-RVG-----KDVYDYMI---SIKFEGNACVKRPVLD 138
+ LF + ++ V + L + R G +DV+D M SI + G +L
Sbjct: 113 DARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNG-------LLA 165
Query: 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
+++ GR+E A FE K + +L+ N LM Y K
Sbjct: 166 AYVRSGRLEEARRLFESKS-----------------------DWELISCNCLMGGYVKRN 202
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------FREE-----------ITGFTQ 239
L A F +I + L+SWN M++GYA G F E + + Q
Sbjct: 203 MLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQ 262
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G + A F M Q +S + ++A AQ K +G+E+
Sbjct: 263 DGMLDEARRVFDEMPQK----REMSYNVMIAGYAQYKRMDMGREL--------------- 303
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
+ +G+ WN +I Y + G + + F+MM + ++ + ++
Sbjct: 304 -FEEMPFPNIGS----WNIMISGYCQNGDLAQARN--LFDMMPQRDSV-----SWAAIIA 351
Query: 360 LLARAGQFDDTLNFMKKMPFEPSS 383
A+ G +++ +N + +M + S
Sbjct: 352 GYAQNGLYEEAMNMLVEMKRDGES 375
>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 866
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/549 (26%), Positives = 213/549 (38%), Gaps = 191/549 (34%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +N L HG E+H L+ L D +L+D YAKC L +A F ++ ++L
Sbjct: 328 KSVANSGSLGHGTEVHCFFLRHG-LSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNL 386
Query: 216 VSWNAMLAG-----------------------------------YALGGFREE------- 233
+WN+++AG YA+ G +
Sbjct: 387 ATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQ 446
Query: 234 ----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
I+G GD + + FFS M Q +QP+ +++ +L ACA +
Sbjct: 447 IKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLAL 506
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISI------------------------------- 306
GKE+H + LR V ALI +
Sbjct: 507 LTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTG 566
Query: 307 -------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
GL + +L+ G + E W Y + M+ +Y +
Sbjct: 567 LAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLV--TEAWEYLDDMEAKYGV 624
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAAR 397
P E + CMVDLLAR G D+ + F+++ P EP ++ C N D+AE AAR
Sbjct: 625 APTAEHHACMVDLLARRGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAAR 684
Query: 398 HLFELEPLSSGK-------------------------------------------VHSF- 413
HLF+LEP +S +H F
Sbjct: 685 HLFKLEPHNSANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFE 744
Query: 414 -IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKL 455
G + H +I +++ RL S+++ +GY +P G H+EKL
Sbjct: 745 VDGGSSPHPETPEIYDEMSRLVSQMRMVGY---VPDTGCIAYDVPEEEKELLLLCHTEKL 801
Query: 456 ALAFGLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
A+ +GLI S +P+RV+KN RMC DCH K+VS R+ II+ D RFHHFVD
Sbjct: 802 AVVYGLIRSDKSRAPVRVVKNTRMCRDCHEVIKHVSALCGRQ----IILRDASRFHHFVD 857
Query: 515 GACSCGDYW 523
G CSC DYW
Sbjct: 858 GKCSCDDYW 866
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA--- 223
G+ +H H L+ +++ LV L YA+ + A + +V+WNA++A
Sbjct: 197 GRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCV 256
Query: 224 -------------------------GYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
L + ++G ++G AL RM++ +
Sbjct: 257 RLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGI 316
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
P+ ++S +L + A G E+H + LRH GL ++ +
Sbjct: 317 LPDAATVSSLLKSVANSGSLGHGTEVHCFFLRH----------------GLSPDAYTGTA 360
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
L+DMY +CG + + R F+ ++ + + +V A AG FD L ++ M
Sbjct: 361 LVDMYAKCGRLDIAQ--RVFDGLEHRN-----LATWNSLVAGHANAGHFDRALELVEAM 412
>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
Length = 796
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 153/619 (24%), Positives = 264/619 (42%), Gaps = 137/619 (22%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM-- 61
L + MD+ + T+ + C L L+ G ++HA + G EL A L M
Sbjct: 211 LYEDMDV---EPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYA 267
Query: 62 -----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------- 103
F+++P R+V SW++M+ + ++E + + + EGV
Sbjct: 268 RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFAS 327
Query: 104 ---ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKD 157
AC+ + D R G+ V+D ++ ++ ++D++ G ++ A F E +D
Sbjct: 328 VLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRD 387
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY-LKVAHCK----FSKIKQ 212
++L G H +L ++ N+ K Y ++ C F+ +Q
Sbjct: 388 EGLWTVLIGGYSKQGHRTGVLELYREM--KNTTKVPATKIIYSCVISACASLGAFADARQ 445
Query: 213 KHL-VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
H + + M++ + L + ++++G+ E+A + F +M D LA
Sbjct: 446 AHSDIEADGMISDFVLA--TSLVNMYSRWGNLESARQVFDKMSSRD----------TLAW 493
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
+ G+ E HG L + ++ ++G + ++ +Y A +
Sbjct: 494 TTLIAGYAKHGE-HGLALGLYKEME---------LEGAEPSELTF--MVVLYACSHAGLQ 541
Query: 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS-------- 383
+G + F ++ +Y M P + Y C++DLL+RAG+ D + MP EP+
Sbjct: 542 EQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLG 601
Query: 384 AEPCNPDI--AEHAARHLFELEPLS----------------------------------- 406
A + D+ A HAA + +L+P+
Sbjct: 602 ASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKR 661
Query: 407 --------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------K 444
+ ++H F GD SH +I +L RL +IK+ GY+ K
Sbjct: 662 RGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEK 721
Query: 445 RIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
+ HSEKLA+AFGLI+T+PG+ LR+ LR+C DCHS K++S + REII+
Sbjct: 722 ELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIAR----REIIVR 777
Query: 505 DNYRFHHFVDGACSCGDYW 523
D+ RFH F DG CSCGDYW
Sbjct: 778 DSSRFHKFRDGQCSCGDYW 796
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 137/345 (39%), Gaps = 86/345 (24%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
N+ LG ++ CG A + F+ + +N +SW SM+ Y G+Y
Sbjct: 57 NVFLGNEIVRAYGKCGSVASARVA-FDAIARKNDYSWGSMLTAYAQNGHY---------- 105
Query: 97 IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156
R D+Y M + N V VL C +E
Sbjct: 106 ---------------RAALDLYKRM---DLQPNPVVYTTVLG---ACASIEA-------- 136
Query: 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
L+ GK IH L+ D+++ NSL+ YAKC L+ A F ++ + V
Sbjct: 137 -------LEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSV 189
Query: 217 -SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
SWNAM+A YA G EE A+ + M D++P+ + + VL+AC+ +
Sbjct: 190 SSWNAMIAAYAQSGHFEE------------AIRLYEDM---DVEPSVRTFTSVLSACSNL 234
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
G++IH ALIS +G + N+L+ MY RC + ++
Sbjct: 235 GLLDQGRKIH----------------ALISSRGTELDLSLQNALLTMYARCKCL--DDAA 276
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ F+ + + + + M+ A FD+ + F KM E
Sbjct: 277 KIFQRLPRR-----DVVSWSAMIAAFAETDLFDEAIEFYSKMQLE 316
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+++ + N ++ Y KC + A F I +K+ SW +ML YA Q G
Sbjct: 56 ANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYA------------QNG 103
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL+ + RM D+QPN + + VL ACA ++ + GK IH +
Sbjct: 104 HYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRI------------- 147
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+GL + NSL+ MY +CG+++ + R FE M + + + M+
Sbjct: 148 --SGTKGLKLDVILENSLLTMYAKCGSLE--DAKRLFERMSGRRS----VSSWNAMIAAY 199
Query: 362 ARAGQFDDTLNFMKKMPFEPS 382
A++G F++ + + M EPS
Sbjct: 200 AQSGHFEEAIRLYEDMDVEPS 220
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 86/405 (21%), Positives = 148/405 (36%), Gaps = 115/405 (28%)
Query: 9 LLQSMDLT-NPDECTVTYALIFQRCPKLNNLELGIQVHAHLI-VCGVELCAFL------- 59
L + MDL NP V Y + C + LE G +H+ + G++L L
Sbjct: 111 LYKRMDLQPNP----VVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTM 166
Query: 60 -----------GMFEKMP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-------G 100
+FE+M R+V SW +M+ Y G++EE + L+ + E
Sbjct: 167 YAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTS 226
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V ACS L G+ ++ + S E + ++ +L M+ +C ++ A+ F+
Sbjct: 227 VLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQ------ 280
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
L + D+ VSW+A
Sbjct: 281 -------------RLPRRDV-----------------------------------VSWSA 292
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+A +A +E A+EF+S+M ++PN + + VL ACA V +
Sbjct: 293 MIAAFAETDLFDE------------AIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRA 340
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGR 325
G+ +H +L + +++ G AL+ + Q +W LI Y +
Sbjct: 341 GRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSK 400
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
G + + MK + Y C++ A G F D
Sbjct: 401 QG--HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADA 443
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 151/583 (25%), Positives = 237/583 (40%), Gaps = 178/583 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP+R+ F+W++++ Y G E + L+ + +E G D D
Sbjct: 117 LFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEE-------------PGNDGADN 163
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK--D 178
+ A +CGR G+E+H H +++ D
Sbjct: 164 EFTASSALAAAAA-------ARCGRA--------------------GRELHCHVVRRGID 196
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
D ++ ++L D YAKC + A F ++ + VSW AM+ Y GG
Sbjct: 197 AAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGG--------- 247
Query: 239 QYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS- 296
G F M++T ++PN + +GVL ACAQ G+++HG + + S
Sbjct: 248 ---RGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSC 304
Query: 297 -------------TGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQKNEGWRYFEM-- 340
+G A+ + + V W ++I Y + G Q E RYF+M
Sbjct: 305 FAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNG--QPEEALRYFDMFL 362
Query: 341 ---------------------------------MKKEYNMEPAMEQYCCMVDLLARAGQF 367
+K++Y +E + Y C++DLL+R+GQF
Sbjct: 363 RSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQF 422
Query: 368 DDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------- 408
+ + M +P S C N +A AA LFE+EP +
Sbjct: 423 ERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIY 482
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+VH F+ GD SH +I L +LY
Sbjct: 483 ASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLY 542
Query: 435 SEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
++ + GY+ I HSE+LA+AFG+I+T GSP++V KNLR+CG
Sbjct: 543 VKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICG 602
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ K +S+ +R+II+ D+ RFHHF DG CSC DYW
Sbjct: 603 DCHAAIKLISQIV----QRDIIVRDSNRFHHFKDGICSCRDYW 641
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 31/163 (19%)
Query: 183 DLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ +N+L+ ++ R+L A F ++ Q+ +W+A+++GY T++G
Sbjct: 93 DICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGY------------TRHG 140
Query: 242 DGETALEFFSRMIQ---TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
E AL + RM + D N + S LAA A + + G+E+H +V+R I + G
Sbjct: 141 QPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGG 200
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+ +W++L DMY +CG + ++ R F+ M
Sbjct: 201 DAV-------------LWSALADMYAKCGRV--DDARRVFDRM 228
>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Glycine max]
Length = 854
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 160/649 (24%), Positives = 251/649 (38%), Gaps = 200/649 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+L SM+ ++TY+ + + C + G +VH H+ G FL
Sbjct: 272 VLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYV 331
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F+KMPERNV SWT+M+ Y+ + + L + +GV
Sbjct: 332 KFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPN------ 385
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
M + AC + L K++
Sbjct: 386 ----------MFTFSSVLRACER------------------------------LYDLKQL 405
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H + K LESD+ V ++L+D Y+K L A F ++ V WN+++A +A
Sbjct: 406 HSW-IMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFA---- 460
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q+ DG+ AL + M + + +L+ VL AC + +LG++ H +VL+
Sbjct: 461 --------QHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK 512
Query: 291 HHIQLSTGVGIA-----------------------LIS----IQGLGTGSFVWNSL---- 319
L + +IS I GL F +L
Sbjct: 513 FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFE 572
Query: 320 -----------IDMYGRCGAIQK----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
I + G A NEGW YF M Y ++P E Y CM+DLL RA
Sbjct: 573 SMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRA 632
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------ 408
+ DD + + +M EP + C N D+A +AA+ + +L+P +G
Sbjct: 633 EKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTGAYVLLS 692
Query: 409 -------------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
++H+FI GD SH + +I+ +L
Sbjct: 693 NIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLN 752
Query: 432 RLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIK 474
+ + GY +P HSEKLA+ FG++S +R+ K
Sbjct: 753 QFICRLAGAGY---VPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKTIRIWK 809
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NL++CGDCH K +++ E +R I++ D R+HHF DG CSCGDYW
Sbjct: 810 NLKICGDCHKFAKLIAELE----QRHIVIRDPIRYHHFQDGVCSCGDYW 854
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 150/519 (28%), Positives = 228/519 (43%), Gaps = 113/519 (21%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
+FQ N+L L + CG VE L F+KMPE+++ SWT+M+ Y +G Y
Sbjct: 224 LFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRL--FDKMPEKDIVSWTTMLVGYAKIGEY 281
Query: 87 EEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146
+ +F D +D+ + NA ++ + +CG+
Sbjct: 282 DAAQGIF----------------DAMPNQDIAAW--------NA-----LISAYEQCGKP 312
Query: 147 EMASGEFEEKDFSNLS-----LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ A F E S + LK G +++ H + SL+D Y KC L+
Sbjct: 313 KEALELFHELQLSKTAKPDEVTLKQGMKLNCH------------LTTSLIDMYCKCGDLQ 360
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A F +++K + W+AM+AG A+ +G G+ A+ FS+M + ++PN
Sbjct: 361 KALMVFHSVERKDVFVWSAMIAGLAM------------HGHGKDAIALFSKMQEDKVKPN 408
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
++ + +L AC+ V G G + ++L G + + VW +L+
Sbjct: 409 AVTFTNILCACSHV-----GLVEEGRTFFNQMELVYGK-------MPMAPAASVWGALL- 455
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEY-NMEPAME-QYCCMVDLLARAGQFDDTLNFMKKMPF 379
GA +E E + +EP Y + ++ A+AG++D K M
Sbjct: 456 -----GACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRD 510
Query: 380 EPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
EP I G VH F+ GD SH KI KL + + ++
Sbjct: 511 VGLKKEPGCSSIE-------------VDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLET 557
Query: 440 IGYM---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
IGY+ K HSEKLA+AFGLIST P+R++KNLR+CGDCHS
Sbjct: 558 IGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHS 617
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VSK +REI++ D YRFHHF +G CSC DYW
Sbjct: 618 VAKLVSKL----YDREILLRDRYRFHHFREGHCSCMDYW 652
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 45/236 (19%)
Query: 165 KHGKEIHPHHLKK----DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
K K+IH L+ D + L+ + + + Y A F +I +L +WN
Sbjct: 49 KQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDY---AQQVFDQIPHPNLYTWNT 105
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFK 279
++ YA + +L F RM+ Q+ P+ + ++ A ++++
Sbjct: 106 LIRAYA------------SSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELF 153
Query: 280 LGKEIHGYVLRHHIQLSTGVGI--ALISIQ------GLGTGSFV---------WNSLIDM 322
GK HG V++ + L + V I +LI GLG FV WNS+I
Sbjct: 154 TGKAFHGMVIK--VLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITA 211
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+ + G + E F+ M+ + ++ + M+D+ + G +D KMP
Sbjct: 212 FVQGGCPE--EALELFQEMETQNSLTLSN----AMLDMYTKCGSVEDAKRLFDKMP 261
>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
Length = 634
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 162/643 (25%), Positives = 248/643 (38%), Gaps = 211/643 (32%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ F+ L G Q+HA + CG L F+G +F+++
Sbjct: 60 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF--YLLIDE--------GVYKACSELKDHRVGK 115
PERN+ +W + + G E + F + ID ACS+ +G
Sbjct: 120 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 179
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMASGE--------------- 152
++ ++ F+ + V ++D + KC ++ EM +
Sbjct: 180 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 239
Query: 153 ----------------FEEKDF---------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
E DF + ++ L+ G+ IH H +K +E + V
Sbjct: 240 EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERTIFVG 298
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
++L+D Y KC ++ + F ++ +K+LV+ N+++ GYA G + AL
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYA------------HQGQVDMAL 346
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M P ++ V
Sbjct: 347 ALFEEMAPRGCGPTPNYMTFV--------------------------------------- 367
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
SL+ R GA++ G + F+ M+ Y +EP E Y C+VD+L RAG
Sbjct: 368 ----------SLLSACSRAGAVEN--GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 415
Query: 368 DDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG--------- 408
+ F+KKMP +P+ + C P + AA +LF+L+P SG
Sbjct: 416 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTF 475
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+VH+F A D SH L +I L +L
Sbjct: 476 AAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLR 535
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+E++ GY K HSEKLALAFGL+S P+R+ KNLR+CG
Sbjct: 536 NEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICG 595
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VS + K REII+ DN RFH F DG CSC DYW
Sbjct: 596 DCHSFFKFVSGSVK----REIIVRDNNRFHRFKDGICSCKDYW 634
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 240/578 (41%), Gaps = 175/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP R++ SW +M+G G E ++L L+ R G ++
Sbjct: 121 VFDEMPSRSLVSWNTMIGSLTQNGEENEALDLL--------------LQMQREGTPFSEF 166
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
IS AC + L S LL H I K +
Sbjct: 167 TISSVL--CACAAKCAL---------------------SECQLL-HAFAI------KAAM 196
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ ++ V +L+D YAKC +K A C F + + +V+W++M AGY E+
Sbjct: 197 DLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ------- 249
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F + +T ++ + +S V+ ACA + GK+++ + + + V
Sbjct: 250 -----ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVA 304
Query: 301 IALISIQGLGTG---------------SFVWNSLIDMYGR-------------------- 325
+LI + G +WN++I R
Sbjct: 305 SSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLS 364
Query: 326 ------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
CG + +G +YF++M KE+++ P + Y CMVD L+RAGQ + +
Sbjct: 365 PNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYD 424
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
+ K+PF S++ C N ++AE AA+ LF++EP +SG
Sbjct: 425 LISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGK 484
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
KVH F+ G+ +H + +I KL + E++K
Sbjct: 485 WDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQK 544
Query: 440 IGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+GY +K+ HSEKLA GL+ P +P+R++KNLR+CGDCHS
Sbjct: 545 LGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSF 604
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K SK R++I+ D RFHHF +G CSCGD+W
Sbjct: 605 MKLASKF----FCRDVIVRDTNRFHHFKNGCCSCGDFW 638
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 29/168 (17%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL GK H L L++DLL +N L++ Y+KC + A F ++ + LVSWN M
Sbjct: 79 LLLQGKACHAQILLMG-LKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTM- 136
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I TQ G+ AL+ +M + + ++S VL ACA +
Sbjct: 137 -----------IGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQ 185
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+H + ++ + L+ FV +L+D+Y +CG ++
Sbjct: 186 LLHAFAIKAAMDLNV----------------FVATALLDVYAKCGLMK 217
>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
1
gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 684
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 162/643 (25%), Positives = 248/643 (38%), Gaps = 211/643 (32%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ F+ L G Q+HA + CG L F+G +F+++
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF--YLLIDE--------GVYKACSELKDHRVGK 115
PERN+ +W + + G E + F + ID ACS+ +G
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 229
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMASGE--------------- 152
++ ++ F+ + V ++D + KC ++ EM +
Sbjct: 230 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 289
Query: 153 ----------------FEEKDF---------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
E DF + ++ L+ G+ IH H +K +E + V
Sbjct: 290 EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERTIFVG 348
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
++L+D Y KC ++ + F ++ +K+LV+ N+++ GYA G + AL
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYA------------HQGQVDMAL 396
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M P ++ V
Sbjct: 397 ALFEEMAPRGCGPTPNYMTFV--------------------------------------- 417
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
SL+ R GA++ G + F+ M+ Y +EP E Y C+VD+L RAG
Sbjct: 418 ----------SLLSACSRAGAVEN--GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 465
Query: 368 DDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG--------- 408
+ F+KKMP +P+ + C P + AA +LF+L+P SG
Sbjct: 466 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTF 525
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+VH+F A D SH L +I L +L
Sbjct: 526 AAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLR 585
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+E++ GY K HSEKLALAFGL+S P+R+ KNLR+CG
Sbjct: 586 NEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICG 645
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VS + K REII+ DN RFH F DG CSC DYW
Sbjct: 646 DCHSFFKFVSGSVK----REIIVRDNNRFHRFKDGICSCKDYW 684
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K+ + S ++ G+ +H +K D + N L++ Y+K + + A +++
Sbjct: 14 KNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNV 73
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSW ++ I+G Q G TAL F M + + PN + A A +
Sbjct: 74 VSWTSL------------ISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASL 121
Query: 276 KGFKLGKEIHGYVLR 290
+ GK+IH ++
Sbjct: 122 RLPVTGKQIHALAVK 136
>gi|242034187|ref|XP_002464488.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
gi|241918342|gb|EER91486.1| hypothetical protein SORBIDRAFT_01g019317 [Sorghum bicolor]
Length = 701
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 161/679 (23%), Positives = 275/679 (40%), Gaps = 192/679 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD VT A I C L L +G Q+H++++ CG+++ ++G
Sbjct: 42 PD--AVTVASILPACAGLQALGIGKQLHSYVLRCGIKINVYVGASLIALYSECGEFDDAR 99
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELK 109
+F + E+NV W ++ Y G ++ F L+ ++G+ A +++
Sbjct: 100 VVFSTIQEKNVNVWNELVQSYIREGSMDKAWEAFDLMQEDGLEPDIVTYNSFIAAYAKVG 159
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---------RMEMASGEFEEKDFS- 159
+ +++ M + + N ++ + G R S + + K ++
Sbjct: 160 QNEQAYELFSRMADVGLKPNVVSMNALICGLHRHGLYTDALEAFRYMQRSSDGKSKGWAF 219
Query: 160 ----------------------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+L L + GKE+H + LK + L S++ +++ L+D Y K
Sbjct: 220 LDNCDPIQPTGTTITGVLSLLADLKLDRLGKEVHCYALK-NGLASNIYISSKLVDLYGKI 278
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ A F KI K++V+WN+++A Y E L+ M Q++
Sbjct: 279 GDMTSAANVFQKIGNKNVVTWNSLMAAYKHNRMPE------------VTLKLLGEMFQSN 326
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR-HHIQLSTGVGIALISIQG-------- 308
+ PN +++ L +C G+E+H Y+ + T + ALI++ G
Sbjct: 327 LHPNLVTVHIALMSCGVTMALGYGRELHSYITKCWPGGYPTTLASALINMYGKCGNIEDA 386
Query: 309 -------LGTGSFVWNSL-------------IDM--YGRCGAIQKN-------------- 332
+ VWN++ ID+ Y IQ +
Sbjct: 387 RLVFKSTVPKDIAVWNAMMSCYLLHRMPMDIIDLFNYLEQSGIQPDHITFILLLSACKQE 446
Query: 333 ----EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
E YF M+ Y ++P+++ Y CMVD++ AG ++L ++KMP +P +
Sbjct: 447 GLFEEAQSYFYNMEDVYGIKPSLKHYTCMVDIMGSAGLLAESLTLIQKMPLKPDACLWST 506
Query: 385 --EPC----NPDIAEHAARHLFELEP---------------------------------- 404
+ C N +I E AA+ LFELEP
Sbjct: 507 VLKACKLHSNLEIGEKAAKALFELEPHNPSNYMVLSNIYADTGLLDASEAVRDAMTEQGL 566
Query: 405 ---------LSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY----------MKR 445
+ VHSF AG+ SH + I L +++ Y ++
Sbjct: 567 HVDRQCSWLYNGTTVHSFEAGNLSHPAIDAILSTWKHLTVRMEQSRYSTEDIGPYYNVEV 626
Query: 446 IP-ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
P +C H+EK+A+ +GLIST P+R+ KN RMC +CHS K++S R+ REII+
Sbjct: 627 DPLSCHHTEKIAVCYGLISTYDHQPIRISKNFRMCMECHSSIKFIS----RDMNREIIVS 682
Query: 505 DNYRFHHFVDGACSCGDYW 523
D +HHF DG CSC D W
Sbjct: 683 DGCTYHHFKDGTCSCRDAW 701
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 33/177 (18%)
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SWN +++G +E ALEFF M +++ +P+ ++++ +L ACA ++
Sbjct: 12 SWNCIISGCVQNALYDE------------ALEFFLEMCESE-RPDAVTVASILPACAGLQ 58
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLI 320
+GK++H YVLR I+++ VG +LI++ G F VWN L+
Sbjct: 59 ALGIGKQLHSYVLRCGIKINVYVGASLIALYS-ECGEFDDARVVFSTIQEKNVNVWNELV 117
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
Y R G++ K W F++M+++ +EP + Y + A+ GQ + +M
Sbjct: 118 QSYIREGSMDK--AWEAFDLMQED-GLEPDIVTYNSFIAAYAKVGQNEQAYELFSRM 171
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 159/597 (26%), Positives = 255/597 (42%), Gaps = 164/597 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEE-------IVNLF-YLLIDE----------GVY 102
+F +MP+RN FSW ++ + G+ E + LF ++ DE V
Sbjct: 74 IFNQMPQRNCFSWNTI-----IRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVL 128
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
KAC++ + GK ++ + F G+ V ++ M++ CG M+ A F + +
Sbjct: 129 KACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYK------N 182
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+++ + K+D ++++ N ++D Y + K A F K++Q+ +VSWN M+
Sbjct: 183 IIEREMVMMIDRRKRD---GEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 239
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLG 281
+GY+ GF ++ A+E F M + D++PN ++L VL A +++ +LG
Sbjct: 240 SGYSQNGFFKD------------AVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELG 287
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MY 323
+ +H Y I++ +G ALI + W+++I+ ++
Sbjct: 288 EWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIH 347
Query: 324 GRCG------------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G+ G A EG RYF M +EP +E
Sbjct: 348 GQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEH 407
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y CMVDLL R G D+ F+ MP +P C N ++ + A L ++
Sbjct: 408 YGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMV 467
Query: 404 PLSSGK-------------------------------------------VHSFIAGDTSH 420
P SG +H F+ D SH
Sbjct: 468 PHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSH 527
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I+ L+ + +++ GY K HSEK+A AFGLISTSP
Sbjct: 528 PRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSP 587
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G P+R++KNLR+C DCHS K +SK K R+I + D RFHHF DG+CSC DYW
Sbjct: 588 GKPIRIVKNLRICEDCHSSIKLISKVYK----RKITVRDRKRFHHFQDGSCSCMDYW 640
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 41/203 (20%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKC----RYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+IH +K + D L ++ F A R L AH F+++ Q++ SWN ++ G
Sbjct: 34 QIHAVFIKSGQIR-DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRG 92
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKE 283
++ + + T F M+ + ++PN + VL ACA+ + GK+
Sbjct: 93 FSESDEDKALIAIT----------LFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQ 142
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
IHG L++ G G FV ++L+ MY CG ++ Y ++++
Sbjct: 143 IHGLALKY----------------GFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186
Query: 344 EYNMEPAMEQYCCMVDLLARAGQ 366
E M M+D R G+
Sbjct: 187 EMVM---------MIDRRKRDGE 200
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 145/605 (23%), Positives = 242/605 (40%), Gaps = 192/605 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KM +R++ SW M+G Y G + E + L+ L EG +
Sbjct: 264 VFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKR----------------- 306
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
K + + C S++ L G+ +H H L++ L
Sbjct: 307 -----------TKATFVSILGAC---------------SSVKALAQGRLVHSHILERG-L 339
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------- 233
+S++ V +L++ YAKC L+ A F+ +K + V+W+ ++ YA G+ ++
Sbjct: 340 DSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKV 399
Query: 234 ---------------ITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKG 277
IT + Q G A++ F M ++P+ ++ VL ACA +
Sbjct: 400 FDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGR 459
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALIS-------------------------------- 305
K +H + ++ + V LI+
Sbjct: 460 LSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAA 519
Query: 306 ------------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
++G+ + S++ + G+++ +GWRYF M + + +
Sbjct: 520 FSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLE--QGWRYFTDMAELHGL 577
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAAR 397
P + + MVDLL R+G+ D ++ MPFEP C ++ E AA
Sbjct: 578 APTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAE 637
Query: 398 HLFELEPLSS-------------------------------------------GKVHSFI 414
++EL+P S+ GK+H F
Sbjct: 638 RVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFS 697
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFG 460
+G H +I E+L RL+ ++ GY+ A HSEK+A+AFG
Sbjct: 698 SGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFG 757
Query: 461 LIST-SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF-VDGACS 518
L+S+ G P+RV+KNLR+C DCH+ TK+++ R R+II+ D RFH F DG CS
Sbjct: 758 LVSSRGSGEPIRVVKNLRVCSDCHTATKFIA----RIAGRDIILRDCNRFHRFSSDGKCS 813
Query: 519 CGDYW 523
CGDYW
Sbjct: 814 CGDYW 818
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 134/341 (39%), Gaps = 93/341 (27%)
Query: 61 MFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+FE M +RNV SW +M+ Y G+ E + L++ + +G V ACS L
Sbjct: 64 VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------- 155
G+++++ + + + ++ M+ + G + A F+
Sbjct: 124 AQ---GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180
Query: 156 ----------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLE 181
FS +L G++IH + + +
Sbjct: 181 LAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAE-IVANGFD 239
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SDL+V +L++ Y KC A F K+K++ +VSWN M+ Y Q G
Sbjct: 240 SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCY------------VQNG 287
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
D ALE + ++ + + +L AC+ VK G+ +H ++L
Sbjct: 288 DFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILE----------- 336
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+GL + V +L++MY +CG+++ E + F MK
Sbjct: 337 -----RGLDSEVAVATALVNMYAKCGSLE--EARKVFNAMK 370
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 43/229 (18%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAM 221
+ G+ +H ++ E D +V N+L+ Y KC L A F + +Q+++VSWNAM
Sbjct: 23 VAEGRALH-ERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAM 81
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+A YA Q G AL + RM + + ++ VL AC+ + G
Sbjct: 82 IAAYA------------QNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---G 126
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+EIH V L S Q L N+L+ MY R G++ + R F+ +
Sbjct: 127 REIHNRVFYS----------GLDSFQSLA------NALVTMYARFGSV--GDAKRMFQSL 168
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP--FEPSSAEPCN 388
+ + ++ +++G + L K+M +P+S N
Sbjct: 169 QTRDET-----SWNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYIN 212
>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 867
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 145/549 (26%), Positives = 213/549 (38%), Gaps = 191/549 (34%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +N L HG E+H L+ L D +L+D YAKC L +A F ++ ++L
Sbjct: 329 KSVANSGSLGHGTEVHCFFLRHG-LSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNL 387
Query: 216 VSWNAMLAG-----------------------------------YALGGFREE------- 233
+WN+++AG YA+ G +
Sbjct: 388 ATWNSLVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQ 447
Query: 234 ----------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
I+G GD + + FFS M Q +QP+ +++ +L ACA +
Sbjct: 448 IKSAGVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLAL 507
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISI------------------------------- 306
GKE+H + LR V ALI +
Sbjct: 508 LTKGKELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTG 567
Query: 307 -------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
GL + +L+ G + E W Y + M+ +Y +
Sbjct: 568 LAVHGQAHEAAALFHDMWRSGLKPDGITFTALLTACRSMGLV--TEAWEYLDDMEAKYGV 625
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAAR 397
P E + CMVDLLAR G D+ + F+++ P EP ++ C N D+AE AAR
Sbjct: 626 APTAEHHACMVDLLARRGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAAR 685
Query: 398 HLFELEPLSSGK-------------------------------------------VHSF- 413
HLF+LEP +S +H F
Sbjct: 686 HLFKLEPHNSANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFE 745
Query: 414 -IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKL 455
G + H +I +++ RL S+++ +GY +P G H+EKL
Sbjct: 746 VDGGSSPHPETPEIYDEMSRLVSQMRMVGY---VPDTGCIAYDVPEEEKELLLLCHTEKL 802
Query: 456 ALAFGLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
A+ +GLI S +P+RV+KN RMC DCH K+VS R+ II+ D RFHHFVD
Sbjct: 803 AVVYGLIRSDKSRAPVRVVKNTRMCRDCHEVIKHVSALCGRQ----IILRDASRFHHFVD 858
Query: 515 GACSCGDYW 523
G CSC DYW
Sbjct: 859 GKCSCDDYW 867
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA--- 223
G+ +H H L+ +++ LV L YA+ + A + +V+WNA++A
Sbjct: 198 GRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCV 257
Query: 224 -------------------------GYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
L + ++G ++G AL RM++ +
Sbjct: 258 RLGLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRMLEQGI 317
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
P+ ++S +L + A G E+H + LRH GL ++ +
Sbjct: 318 LPDAATVSSLLKSVANSGSLGHGTEVHCFFLRH----------------GLSPDAYTGTA 361
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
L+DMY +CG + + R F+ ++ + + +V A AG FD L ++ M
Sbjct: 362 LVDMYAKCGRLDIAQ--RVFDGLEHRN-----LATWNSLVAGHANAGHFDRALELVEAM 413
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 153/590 (25%), Positives = 243/590 (41%), Gaps = 203/590 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCAFLG--------- 60
T+ + + C + LELG VHA ++ G E C G
Sbjct: 229 TFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKK 288
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++ P ++ +W++M+G Y G V LF + GV C +
Sbjct: 289 VFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGV---CPD----------EIT 335
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+S+ +AC ++L L+ GK + + +K+ +
Sbjct: 336 MVSVL---SAC---------------------------ADLGALELGKWLESYIERKNIM 365
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S L N +L+D +AKC + A F ++K + +VSW +M+ G A+ +
Sbjct: 366 RSVELCN-ALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAM------------H 412
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G A+ F M++ + P+ ++ GVL+AC+
Sbjct: 413 GRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSH-------------------------- 446
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ L+D +G YF M+ +++ P +E Y CMVD+
Sbjct: 447 ----------------SGLVD-----------KGHYYFNTMENMFSIVPKIEHYGCMVDM 479
Query: 361 LARAGQFDDTLNFMKKMPFEP------SSAEPCNP----DIAEHAARHLFELEP------ 404
L+RAG+ ++ L F++ MP EP S C+ + E A+ L EP
Sbjct: 480 LSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNY 539
Query: 405 --LS-----------------------------------SGKVHSFIAGDTSHSLVHKIS 427
LS + +++ F+AGD SH +I
Sbjct: 540 VLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIY 599
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
E + + EIK+ GY+ K HSEKLA+AF L+ST PG+P+R++
Sbjct: 600 EMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIV 659
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C DCHS TK++SK REI++ D RFHHF +G CSCGD+W
Sbjct: 660 KNLRVCEDCHSATKFISKV----YNREIVVRDRNRFHHFKNGLCSCGDFW 705
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 150/614 (24%), Positives = 262/614 (42%), Gaps = 165/614 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81
T+T A I C + +++ G+ +H H++ G++ +VF +++ MY+
Sbjct: 222 TITVASILPVCAQSDDVINGVLIHLHVLKHGLD-------------SDVFVSNALINMYS 268
Query: 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY-MISIKFEGN---ACVKRPVL 137
G ++ +F D +D+ + I +E N + R
Sbjct: 269 KFGRLQDAQMVF----------------DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFK 312
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
M + R ++ + FS LS + + I ++++ L+ D+++ N+L++ YAK
Sbjct: 313 GMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-T 256
Y+ AH F ++ +K +SWN + +TG+TQ G A++ ++ M +
Sbjct: 373 GYMNCAHTVFDQLPRKDTISWNTL------------VTGYTQNGLASEAIDAYNMMEECR 420
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-------- 308
D PN + ++ A + V + G +IH ++++ + L V LI + G
Sbjct: 421 DTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDA 480
Query: 309 -------LGTGSFVWNSLIDMYGRCG----AIQ--------------------------- 330
S WN++I G G A+Q
Sbjct: 481 MSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHS 540
Query: 331 --KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
+EG + F++M+KEY ++P+++ Y CMVDLL RAG + ++ MP +P ++
Sbjct: 541 GLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGA 600
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSG------------------------------ 408
C N ++ A+ L E++ + G
Sbjct: 601 LLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGL 660
Query: 409 -------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------ 443
K F G+ +H +I ++L L +++K +GY+
Sbjct: 661 RKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEE 720
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
K HSE+LA+AFG+IST P SP+R+ KNLR+CGDCH+ TKY+S R EREI
Sbjct: 721 DEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYIS----RISEREI 776
Query: 502 IMIDNYRFHHFVDG 515
++ D+ RFHHF DG
Sbjct: 777 VVRDSNRFHHFKDG 790
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 111/272 (40%), Gaps = 71/272 (26%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
F+ + ++N+FSW S++ Y G Y E +N L + C + D Y +
Sbjct: 77 FDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL-----FSMCG---GGHLRPDFYTFP 128
Query: 122 ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181
+K ACV L GK++H K E
Sbjct: 129 PILK----ACVS------------------------------LVDGKKVHCCVFKMG-FE 153
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ V SL+ Y++ L VAH F + K + SWNAM I+GF Q G
Sbjct: 154 DDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM------------ISGFCQNG 201
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ AL +RM ++ +TI+++ +L CAQ G IH +VL+H
Sbjct: 202 NAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKH---------- 251
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
GL + FV N+LI+MY + G +Q +
Sbjct: 252 ------GLDSDVFVSNALINMYSKFGRLQDAQ 277
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 162/647 (25%), Positives = 258/647 (39%), Gaps = 189/647 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVH--------------------AHLIVCGVELCAFLGMFE 63
++ + + KL+ L LG+++H A CG + A +F+
Sbjct: 117 SFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARF-LFD 175
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
KM R+V +W M+ Y+ +Y+ ++ L+ + G V AC+ +
Sbjct: 176 KMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSY 235
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
GK ++ ++ F + ++ +++M+ CG M +A +E++
Sbjct: 236 GKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLA------------------REVY-- 275
Query: 174 HLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
D L S ++V+ +++ YAK ++ A F ++ +K LV W+AM++GYA
Sbjct: 276 ----DQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYA------ 325
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Y E AL+ F+ M + + P+ I++ V++ACA V K IH Y ++
Sbjct: 326 -----ESYQPLE-ALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNG 379
Query: 293 IQLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCG--------- 327
+ + ALI + G+ V W+S+I+ + G
Sbjct: 380 FGRTLPINNALIDMYA-KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALF 438
Query: 328 ------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
I+ N EG ++F M E+ + P E Y CMVDL R
Sbjct: 439 HRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCR 498
Query: 364 AGQFDDTLNFMKKMPFEP------SSAEPCNP----DIAEHAARHLFELEPLSSG----- 408
A + ++ MPF P S C ++ E AA L ELEP G
Sbjct: 499 ANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVL 558
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
+VH F+ D H +I +KL
Sbjct: 559 SNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKL 618
Query: 431 MRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNL 476
+ S++K +GY HSEKLAL +GLI S +R++KNL
Sbjct: 619 DAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNL 678
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCHS K VSK + EI+M D RFHHF G CSC DYW
Sbjct: 679 RICEDCHSFMKLVSKVHR----IEIVMRDRTRFHHFNGGICSCRDYW 721
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 164/642 (25%), Positives = 250/642 (38%), Gaps = 198/642 (30%)
Query: 18 PDECTVTYALIFQRCPKLNN-LELGIQVHA-----------HLIVCGVELCAFLGM---- 61
P+ +T+ + + +L + L G Q+HA H++ + L A G+
Sbjct: 66 PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 125
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
F++MP + SWT+++ Y G E V++ G+
Sbjct: 126 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRP--------------- 170
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
D +++ + C R+ ++A+GE + ++
Sbjct: 171 DSFTAVR-------------VLTACARVADLATGETVWRA-----------------AEQ 200
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ + + V + +D Y KC + A F K++ K V+W AM+ GYA G E
Sbjct: 201 EGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPRE---- 256
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL+ F M ++P+ +++G L+AC ++ LG++ V +
Sbjct: 257 --------ALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP 308
Query: 298 GVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG--------------- 327
+G ALI + Q VWN++I G G
Sbjct: 309 VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKS 368
Query: 328 AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ N+ G RYF M K Y++ P +E Y C+VDLL+RAG +
Sbjct: 369 GVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQE 428
Query: 370 TLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFELEPLSSG---------- 408
+ MP P++A N ++AEH L LEP +SG
Sbjct: 429 AHQLIDDMPM-PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 487
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
KVH F GD SH L +I +KL L
Sbjct: 488 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 547
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
E+K +GY K HSEKLA+AF L+ T PG +RV KNLR+C D
Sbjct: 548 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSD 607
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K +S R REII+ DN RFH F DG+CSC DYW
Sbjct: 608 CHTAIKLIS----RITHREIIVRDNNRFHCFRDGSCSCNDYW 645
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 172/698 (24%), Positives = 275/698 (39%), Gaps = 213/698 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD +VT + + C +L +L LG VH +++ +E A L
Sbjct: 199 PD--SVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAE 256
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELK 109
+FE +P R WT M+ YN G ++E +N+F + + GV AC+ L
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316
Query: 110 DHRVGKDVYDYMI------SIKFEGNACVK--------------------------RPVL 137
+ G+ V+ ++I + F G A ++ ++
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLI 376
Query: 138 DMFIKCGRMEMASGEFEEKDFSNL-----------------SLLKHGKEIHPHHLKKDDL 180
+F + G+ E A F + L S + G +IH + +K +
Sbjct: 377 SIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNF 436
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
V N+L+D YAKC ++ A+ F KIK+K LV+WN+M+ G++ G+ E
Sbjct: 437 ND--FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVE------- 487
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ F +M ++ + ++ V+ AC+ + + GK +H ++ + ++ + +
Sbjct: 488 -----AITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD 542
Query: 301 IALISIQG------LGTGSF---------VWNSLIDMYGRCGAIQKN------------- 332
AL + + G F W+ +I YG G I
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIK 602
Query: 333 --------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG YF M E+ +EP + + CMVDLL+RAG +
Sbjct: 603 PNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQ 661
Query: 373 FMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG-------------- 408
+ +PF +S+ C DI + ++L +++ +G
Sbjct: 662 IITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGT 721
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K++ F GDTSHS I L S +
Sbjct: 722 WDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHA 781
Query: 440 -----------IG---YMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+G + K HSEKLA+AFG+I+T PG+ LR+ KNLR+C DCHS
Sbjct: 782 QVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSF 841
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K SK REIIM D RFH F +G+CSC DYW
Sbjct: 842 AKIASKITG----REIIMRDLNRFHCFRNGSCSCNDYW 875
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 151/385 (39%), Gaps = 123/385 (31%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLGMFEK------- 64
+ Y +F+RC L Q+HAHL + G +E A +G+FE
Sbjct: 2 ILYMPLFRRCATSTTL---TQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT 58
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRV 113
P+ + F W ++ Y G++EE V+L++ ++ + V KACS D V
Sbjct: 59 FPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSV 118
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G V+ +I KCG
Sbjct: 119 GGKVHGRVI-------------------KCG----------------------------- 130
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
ESD +V SL+ Y + L A F + + +V+W+++
Sbjct: 131 ------FESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSI------------ 172
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ F Q G L+ FS+MI ++P+++++ V AC+++ +LG+ +HGYV+R I
Sbjct: 173 VLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREI 232
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
+ + + NSLI MYG+ G + E R FE N+ M
Sbjct: 233 ESNASLN----------------NSLIVMYGKLGDLYSAE--RLFE------NVPCRMTA 268
Query: 354 -YCCMVDLLARAGQFDDTLNFMKKM 377
+ M+ ++G F + LN KM
Sbjct: 269 PWTPMISCYNQSGCFQEALNVFAKM 293
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 164/642 (25%), Positives = 250/642 (38%), Gaps = 198/642 (30%)
Query: 18 PDECTVTYALIFQRCPKLNN-LELGIQVHA-----------HLIVCGVELCAFLGM---- 61
P+ +T+ + + +L + L G Q+HA H++ + L A G+
Sbjct: 113 PNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRA 172
Query: 62 ---FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
F++MP + SWT+++ Y G E V++ G+
Sbjct: 173 QRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRP--------------- 217
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
D +++ + C R+ ++A+GE + ++
Sbjct: 218 DSFTAVR-------------VLTACARVADLATGETVWRA-----------------AEQ 247
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ + + V + +D Y KC + A F K++ K V+W AM+ GYA G E
Sbjct: 248 EGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPRE---- 303
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
AL+ F M ++P+ +++G L+AC ++ LG++ V +
Sbjct: 304 --------ALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNP 355
Query: 298 GVGIALISI---------------QGLGTGSFVWNSLIDMYGRCG--------------- 327
+G ALI + Q VWN++I G G
Sbjct: 356 VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKS 415
Query: 328 AIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
++ N+ G RYF M K Y++ P +E Y C+VDLL+RAG +
Sbjct: 416 GVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQE 475
Query: 370 TLNFMKKMPFEPSSAEPC-----------NPDIAEHAARHLFELEPLSSG---------- 408
+ MP P++A N ++AEH L LEP +SG
Sbjct: 476 AHQLIDDMPM-PANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYS 534
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
KVH F GD SH L +I +KL L
Sbjct: 535 NRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGL 594
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
E+K +GY K HSEKLA+AF L+ T PG +RV KNLR+C D
Sbjct: 595 EMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSD 654
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K +S R REII+ DN RFH F DG+CSC DYW
Sbjct: 655 CHTAIKLIS----RITHREIIVRDNNRFHCFRDGSCSCNDYW 692
>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
Length = 696
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 155/589 (26%), Positives = 221/589 (37%), Gaps = 196/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++MP RNV +W ++M + G E V ++ L G + AC+ + +
Sbjct: 178 LFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTN 237
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ Y ++ KCG GK
Sbjct: 238 LSLGEQFYGFVA-------------------KCG---------------------FGK-- 255
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
D+ V+NS++DFY KCR + A F + ++ VSW +M+ YA G
Sbjct: 256 ------------DVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGA 303
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE F Y A E +P +S VL CA + G LG+ +H +R
Sbjct: 304 EEE--AFFVYLGARRAGE----------EPTDFMVSSVLTTCAGLLGLDLGRALHAVAVR 351
Query: 291 HHIQLSTGVGIALISIQGLGTGS---------------FVWNSLIDMYGRCGAIQK---- 331
I + V AL+ + G G WN++I Y G
Sbjct: 352 SCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSV 411
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
EG+ F+ MK + +EP +E Y C+VDLL
Sbjct: 412 FDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLL 471
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSGK-- 409
RAG + ++ MP PS + C ++ AA LFEL+P SG
Sbjct: 472 CRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHV 531
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
VH F A DT+H + +I
Sbjct: 532 LLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQA 591
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
L +L +++ GYM HSEKLALAFGLI PG P+R++K
Sbjct: 592 LLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIMK 651
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH K++S REII+ DN FHHF + CSC DYW
Sbjct: 652 NLRICVDCHRAFKFISGIAG----REIIVRDNNMFHHFKNYECSCKDYW 696
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 35/199 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G ++H L+ L D V+ + +D Y K L +A F ++ +++V+WNA++
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAV 198
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
L G E +E + + PN +S+ ACA + LG++ +G
Sbjct: 199 LDGRPLE------------TVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYG 246
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+V + G G V NS++D YG+C + K F+ M N
Sbjct: 247 FVAK----------------CGFGKDVSVSNSVVDFYGKCRCVGKARA--VFDGMGVRNN 288
Query: 347 MEPAMEQYCCMVDLLARAG 365
+ +C MV A+ G
Sbjct: 289 VS-----WCSMVVAYAQNG 302
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 28/168 (16%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG----------MFE 63
V+ F C + NL LG Q + + CG + F G +F+
Sbjct: 222 VVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFD 281
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
M RN SW SM+ Y G EE ++ G V C+ L +
Sbjct: 282 GMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDL 341
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
G+ ++ + + N V ++DM+ KCG +E A F E NL
Sbjct: 342 GRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNL 389
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 158/645 (24%), Positives = 252/645 (39%), Gaps = 184/645 (28%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + + C K G Q+H H++ G +L ++ +F++
Sbjct: 105 TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 164
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R+V S+T+++ Y GY +F D KDV + I
Sbjct: 165 SHRDVVSYTALITGYASKGYIASAQKMF----------------DEIPIKDVVSWNAMIS 208
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLE 181
+ L++F + + + E + + ++ G+++H +
Sbjct: 209 GYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW-IDDHGFG 267
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S+L + N+L+D Y KC ++ A F + K ++SWN ++ GY +E
Sbjct: 268 SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE-------- 319
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQLSTGV 299
AL F M+++ PN +++ +L ACA + ++G+ IH Y+ + + ++
Sbjct: 320 ----ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375
Query: 300 GIALISIQG---------------LGTGSFVWNSLI---DMYGRCGA-------IQKNE- 333
+LI + L WN++I M+GR A ++KNE
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435
Query: 334 ----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
G F MK++Y + P +E Y CM+DLL +G F +
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495
Query: 372 NFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK------------ 409
+ M EP C N ++ E A++L ++EP + G
Sbjct: 496 EMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 555
Query: 410 -------------------------------VHSFIAGDTSH------------------ 420
VH FI GD H
Sbjct: 556 RWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLE 615
Query: 421 --SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+ L ++KNLR+
Sbjct: 616 EAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTKPGTKLTIVKNLRV 669
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 670 CRNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 710
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 147/334 (44%), Gaps = 85/334 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF----------LGMFEKMP 66
+ C L +L + +HA +I G +E C + +FE +
Sbjct: 8 LLHNCKTLQSLRM---IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKD 116
E N+ W +M + + + L+ +I G+ K+C++ K R G+
Sbjct: 65 EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ +++ + ++ + V ++ M+++ GR+E A F++
Sbjct: 125 IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSS------------------- 165
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
D++ +L+ YA Y+ A F +I K +VSWNAM++GYA
Sbjct: 166 ----HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYA---------- 211
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+ G+ + ALE F M++T+++P+ ++ V++ACAQ +LG+++H ++ H
Sbjct: 212 --ETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDH----- 264
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G G+ + N+LID+Y +CG ++
Sbjct: 265 -----------GFGSNLKIVNALIDLYIKCGEVE 287
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 145/588 (24%), Positives = 235/588 (39%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKD 110
+FE M +R+ +WT+M+ + G + +N F + ID+ + AC L
Sbjct: 228 LFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSA 287
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF----------------- 153
GK ++ Y+I ++ N V ++DM+ KC ++ A F
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347
Query: 154 ----------------------EEKDFS---------NLSLLKHGKEIHPHHLKKDDLES 182
+ DF+ NL+ L+ G + H L L
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSG-LMH 406
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V+N+L+ Y KC ++ AH F ++ VSW A++ GYA Q+G
Sbjct: 407 YITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYA------------QFGR 454
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
+ ++ F +M+ D++P+ ++ GVL+AC+
Sbjct: 455 AKETIDLFEKMLAKDVKPDGVTFIGVLSACS----------------------------- 485
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
R G ++K G YF M+K++ + P + Y CM+DL +
Sbjct: 486 ----------------------RAGFVEK--GCSYFHSMQKDHGIVPIDDHYTCMIDLYS 521
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
R+G+ + F+K+MP P + C + +I + AA +L E++P +
Sbjct: 522 RSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVL 581
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
KVH F A D SH I EK
Sbjct: 582 LCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEK 641
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
L L S++ + GY + + HSEKLA+AFGL+ P+R++KN
Sbjct: 642 LEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKN 701
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ TK +SK R+I++ D RFH F +G CSCGD+W
Sbjct: 702 LRVCVDCHNATKLISKITG----RDILVRDAVRFHKFSNGVCSCGDFW 745
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 163/390 (41%), Gaps = 74/390 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LL++ P +T + + L + LG Q H ++ G + AF+G
Sbjct: 129 LLRAGSSVRPSR--ITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYA 186
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---ACSE 107
+F++M +NV + +M+ EE LF ++ D +
Sbjct: 187 KMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTG 246
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
+ + ++ ++F+G A + + CG LS L+ G
Sbjct: 247 FTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACG---------------ALSALEQG 291
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K+IH + + + + ++ V ++L+D Y+KCR +K A F ++ K+++SW A++ GY
Sbjct: 292 KQIHAY-IIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQ 350
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G EE A+ FS M + + P+ +L V+++CA + + G + H
Sbjct: 351 NGCSEE------------AVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCL 398
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
L + GL V N+L+ +YG+CG+I+ + R F+ M +
Sbjct: 399 AL----------------VSGLMHYITVSNALVTLYGKCGSIE--DAHRLFDEMLFHDQV 440
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ +V A+ G+ +T++ +KM
Sbjct: 441 S-----WTALVTGYAQFGRAKETIDLFEKM 465
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 120/285 (42%), Gaps = 63/285 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSEL 108
+F M +R+ S+ +++ ++ G + V L++ L+ G + A S L
Sbjct: 94 LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
D +G+ + ++ + F NA V P++ M+ K G + A F+E D N+
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNV------- 206
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++ N+++ +C+ ++ A F + + ++W M
Sbjct: 207 ----------------VMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTM------- 243
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+TGFTQ G AL FF RM + + + +L AC + + GK+IH Y+
Sbjct: 244 -----VTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYI 298
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+R H + FV ++L+DMY +C +I+ E
Sbjct: 299 IRTHYDDNV----------------FVGSALVDMYSKCRSIKPAE 327
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 36/215 (16%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L N+L+ A R L F+ + Q+ VS+NA++AG++ GG
Sbjct: 71 NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHAR--------- 121
Query: 243 GETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+ + +++ + ++P+ I++S ++ A + + LG++ H +LR ++ VG
Sbjct: 122 ---AVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVG 178
Query: 301 IALISI---QGL------------GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
L+ + GL G ++N++I RC ++ E R FE+M
Sbjct: 179 SPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVE--EARRLFEVMTDRD 236
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + MV + G LNF ++M F+
Sbjct: 237 CI-----TWTTMVTGFTQNGLESQALNFFRRMRFQ 266
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 147/588 (25%), Positives = 245/588 (41%), Gaps = 165/588 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F+ NV+ +T+++ + G Y E + L+ ++ E + KAC
Sbjct: 103 IFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLA 162
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
R G++V+ + + F N V+ +++++ KCG + A FEE
Sbjct: 163 LREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE--------------- 207
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ D++ + ++ Y+ ++ A FS++++K V W AM
Sbjct: 208 ---------MPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM--------- 249
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
I GF + + ALE F M +++PN ++ VL+AC+Q+ ++G+ +H Y+ +
Sbjct: 250 ---IDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306
Query: 291 HHIQLSTGVGIALI-------SIQGLGT--------GSFVWNSLID-------------- 321
I+L+ VG ALI SI T +N++I
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366
Query: 322 ---MYGR---------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
M GR G + + G+ F M ++Y +EP +E Y CMVDLL
Sbjct: 367 FRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLG 426
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---- 408
R G+ ++ + ++ M P + C N ++ E A+ L + SG
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVL 486
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H F+ GD H +I EK
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEK 546
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L ++ GY K HSE+LA+ +GLIST P + +RV+KN
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKN 606
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCHS K ++K + R+I++ D RFH+F +GACSCGDYW
Sbjct: 607 LRVCYDCHSAIKLIAKITR----RKIVVRDRNRFHYFENGACSCGDYW 650
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 79/193 (40%), Gaps = 32/193 (16%)
Query: 154 EEKDFSNLSLLKHGKEIHPHH--LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+++ S L +H ++ P H L ++ D + L+ +KC + A F
Sbjct: 49 QKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 108
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ + A+ I GF G+ A++ +SRM+ + P+ ++ +L A
Sbjct: 109 NPNVYLYTAL------------IDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
C + G+E+H L+ G + V ++++YG+CG +
Sbjct: 157 CGSQLALREGREVHSRALK----------------LGFSSNRLVRLRIMELYGKCGEL-- 198
Query: 332 NEGWRYFEMMKKE 344
+ R FE M ++
Sbjct: 199 GDARRVFEEMPED 211
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 39/165 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E T+ + C +L LE+G VH+++ +EL F+G
Sbjct: 276 PNEFTIV--CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 333
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+F++M +R+V ++ +M+ ++ G + + LF +++ GV ACS
Sbjct: 334 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 393
Query: 110 DHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
G +++ DY + + E C ++D+ + GR+E A
Sbjct: 394 LVDFGFEIFHSMARDYRVEPQIEHYGC----MVDLLGRVGRLEEA 434
>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
Length = 742
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 169/704 (24%), Positives = 271/704 (38%), Gaps = 207/704 (29%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEKMPE- 67
D PD VT+ C +L GI++H ++ +E+ A L M++K
Sbjct: 52 DGVRPD--AVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSL 109
Query: 68 -------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKA 104
RNV SW+ M G + + G E + F ++ G+ A
Sbjct: 110 SHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSA 169
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------- 157
CS + G+ ++ + FE V V+ M+ +CG +E A F+ D
Sbjct: 170 CSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 229
Query: 158 -------------------------------FSNLSLLKH---------GKEIHPHHLKK 177
+ +SLL G+ +H +
Sbjct: 230 SWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQ-IVN 288
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
D+LE +++V N+L+ YAKC A F K++Q+ ++SW +++ Y E
Sbjct: 289 DELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHL 348
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q LE ++P+ ++ +L ACA V + GK + +
Sbjct: 349 FQ-----QMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDK 403
Query: 298 GVGIALISIQGLGTGSF-----------------VWNSLIDMYGRCGAIQK--------- 331
VG A++++ G G +WN++I +Y + G +
Sbjct: 404 AVGTAVVNLYG-KCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRME 462
Query: 332 ------------------------NEGWRYFEMMKKEY-NMEPAMEQYCCMVDLLARAGQ 366
++G YF M EY N+ ++ + C+ DLL R G+
Sbjct: 463 MEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGR 522
Query: 367 FDDTLNFMKKMPFEPSSAE------PC--NPDI--AEHAARHLFELEP------------ 404
+ F++K+P +P + C + D+ A+ A L LEP
Sbjct: 523 LKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNI 582
Query: 405 ------------------------------LSSGK-VHSFIAGDTSHSLVHKISEKLMRL 433
+ GK +H F GD +H +I E+L +L
Sbjct: 583 YAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKL 642
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
+S++K+ GY+ K HSE+LA+A GLIST G+PLRV KNLR+C
Sbjct: 643 HSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVC 702
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK R+I++ D RFH F DG CSC DYW
Sbjct: 703 SDCHTATKLISKIAG----RKIVVRDPTRFHLFKDGKCSCQDYW 742
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 139/343 (40%), Gaps = 95/343 (27%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDH 111
F+ + +RN++SWT ++ + + G +E + + +GV +C + +
Sbjct: 15 FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESL 74
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF------------- 158
R G ++ ++ + E + V +L+M+ KCG + A F + +
Sbjct: 75 RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGA 134
Query: 159 ------------------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
S+ +L++ G+ IH + ES
Sbjct: 135 HALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHS-CIALSGFES 193
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQY 240
+LLV N++M Y +C ++ A F + + + +VSWN ML+ Y
Sbjct: 194 ELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTY------------VHN 241
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G+ A++ + RM ++P+ ++ +L+AC+ + LG+ +H ++ ++ + VG
Sbjct: 242 DRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG 298
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
N+L+ MY +CG+ E F+ M++
Sbjct: 299 ----------------NALVSMYAKCGS--HTEARAVFDKMEQ 323
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
YA C A F ++Q++L SW ++A +A+ G +E L R
Sbjct: 1 MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKE------------TLRALER 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M Q ++P+ ++ L +C + + G IH V+ +++ V
Sbjct: 49 MRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVS------------ 96
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
N+L++MY +CG++ + R F M++ N+
Sbjct: 97 ----NALLNMYKKCGSLSHAK--RVFAKMERTRNV 125
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 38/186 (20%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--- 60
K+ L Q M L PD+ VTY + C ++ LG +H ++ +E +G
Sbjct: 245 KDAIQLYQRMQL-RPDK--VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNAL 301
Query: 61 ---------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID------- 98
+F+KM +R++ SWT+++ Y E +LF +++
Sbjct: 302 VSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSS 361
Query: 99 ----------EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148
+ AC+++ GK V + S + V V++++ KCG +E
Sbjct: 362 QRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 421
Query: 149 ASGEFE 154
A F+
Sbjct: 422 ARRIFD 427
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 163/633 (25%), Positives = 255/633 (40%), Gaps = 175/633 (27%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFL 59
D P+E T+ + + C L L G Q+H H I G +L C +
Sbjct: 119 DGIKPNEYTL--GSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRI 176
Query: 60 G----MFEKMP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKA 104
+FE M E+N +WTSM+ Y+ G+ + + F L EG V A
Sbjct: 177 SEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTA 236
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--- 161
C+ + RVG V+ ++ F+ N V+ ++DM+ KC ME A E + ++
Sbjct: 237 CASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSW 296
Query: 162 --------------SLLKHGKEIHPHHLKKDDLE-------------------------- 181
L +H +K DD
Sbjct: 297 NSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIV 356
Query: 182 -----SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ LVNN+L+D YAK + A F + +K ++SW A+ +TG
Sbjct: 357 KTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTAL------------VTG 404
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
T G + AL+ F M + P+ I + VL+A A++ + G+++HG ++ S
Sbjct: 405 NTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSS 464
Query: 297 TGVGIALISI----QGLGTGSFVWNS-----------LIDMYGRCGAIQKNEGWRYFEMM 341
V +L+++ L + ++NS LI Y + G ++ + RYF+ M
Sbjct: 465 LSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLE--DAQRYFDSM 522
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDI 391
+ Y + P E Y CM+DL R+G F + +M EP +S + N +
Sbjct: 523 RTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIEN 582
Query: 392 AEHAARHLFELEPLSS-------------------------------------------G 408
E AA+ L ELEP ++ G
Sbjct: 583 GERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKG 642
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
KVHSF++ D H + +I K+ + IK+ GY K + HSEK
Sbjct: 643 KVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEK 702
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
LA+AFGL+ G+P+R+IKNLR+CGDCHS K
Sbjct: 703 LAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMK 735
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/376 (21%), Positives = 142/376 (37%), Gaps = 94/376 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F P +N SW +++ Y G E NLF+ + +G V + C+ L
Sbjct: 81 LFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVL 140
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE--EKDFSNLS------ 162
G+ ++ + I F+ + V +L M+ +C R+ A FE E + +N++
Sbjct: 141 LLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLT 200
Query: 163 -----------------LLKHGKEIHPHH-----------------------LKKDDLES 182
L + G + + + + K ++
Sbjct: 201 GYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKT 260
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
++ V ++L+D YAKCR ++ A ++ +VSWN+M+ G G E
Sbjct: 261 NIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGE--------- 311
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGI 301
AL F RM + DM+ + ++ +L A + K+ H
Sbjct: 312 ---ALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAH---------------- 352
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
LI G T V N+L+DMY + G + + + FE M +E + + +V
Sbjct: 353 CLIVKTGYATYKLVNNALVDMYAKRGIM--DSALKVFEGM-----IEKDVISWTALVTGN 405
Query: 362 ARAGQFDDTLNFMKKM 377
G +D+ L M
Sbjct: 406 THNGSYDEALKLFCNM 421
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 30/184 (16%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
L K G+ + E D N+++ Y+ R L A F K+ +SWNA++
Sbjct: 38 LSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALI 97
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GY G + E A F M ++PN +L VL C + G+
Sbjct: 98 SGYCKSGSKVE------------AFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGE 145
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
+IHG+ ++ L V N L+ MY +C I + E FE M+
Sbjct: 146 QIHGHTIKTGFDLDVN----------------VVNGLLAMYAQCKRISEAE--YLFETME 187
Query: 343 KEYN 346
E N
Sbjct: 188 GEKN 191
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 160/650 (24%), Positives = 253/650 (38%), Gaps = 194/650 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + + C K G Q+H H++ G +L ++ +F++
Sbjct: 90 TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R+V S+T+++ Y GY +F D KDV + I
Sbjct: 150 SHRDVVSYTALITGYASKGYIASAQKMF----------------DEIPIKDVVSWNAMIS 193
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL---------LKHGKEIHPHHLK 176
+ L++F EM + + +S+ ++ G+++H +
Sbjct: 194 GYAETGNNKEALELF-----KEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSW-ID 247
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
S+L + N+L+D Y KC ++ A F + K ++SWN ++ GY +E
Sbjct: 248 DHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE--- 304
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQ 294
AL F M+++ PN +++ +L ACA + ++G+ IH Y+ + +
Sbjct: 305 ---------ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVA 355
Query: 295 LSTGVGIALISIQG---------------LGTGSFVWNSLI---DMYGRCGA-------I 329
++ +LI + L WN++I M+GR A +
Sbjct: 356 NASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRM 415
Query: 330 QKNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
+KNE G F MK++Y + P +E Y CM+DLL +G
Sbjct: 416 RKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGL 475
Query: 367 FDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK------- 409
F + + M EP C N ++ E A++L ++EP + G
Sbjct: 476 FKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNI 535
Query: 410 ------------------------------------VHSFIAGDTSH------------- 420
VH FI GD H
Sbjct: 536 YATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 595
Query: 421 -------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVI 473
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+ L ++
Sbjct: 596 EVLLEEAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTKPGTKLTIV 649
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 650 KNLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 695
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 132/282 (46%), Gaps = 61/282 (21%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSEL 108
+ +FE + E N+ W +M + + + L+ +I G+ K+C++
Sbjct: 42 ISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKS 101
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K R G+ ++ +++ + ++ + V ++ M+++ GR+E A F++
Sbjct: 102 KAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSS----------- 150
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
D++ +L+ YA Y+ A F +I K +VSWNAM++GYA
Sbjct: 151 ------------HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYA-- 196
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ G+ + ALE F M++T+++P+ ++ V++ACAQ +LG+++H ++
Sbjct: 197 ----------ETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWI 246
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
H G G+ + N+LID+Y +CG ++
Sbjct: 247 DDH----------------GFGSNLKIVNALIDLYIKCGEVE 272
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 203/473 (42%), Gaps = 134/473 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGY 225
G+++H L++ L + V L++ YAKC + +A F + K+LV+W+AM++GY
Sbjct: 145 GRQLHAQALRQG-LATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGY 203
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ G E AL F M ++P+ +++ V++ACA+ LGK +H
Sbjct: 204 SRVGMVNE------------ALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 251
Query: 286 GYVLRHHIQLSTGVGIALISIQ---GL---GTGSF---------VWNSLIDMYGRCGAIQ 330
Y+ R I + + ALI + GL G F W+++I + G ++
Sbjct: 252 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+G RY+ +M+ ++P+ME Y CM
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCM 370
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEP--- 404
VDLL R+G DD +F+ MP P+S C DIAE A + L ELEP
Sbjct: 371 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 430
Query: 405 -----LSS-----------------------------------GKVHSFIAGDTSHSLVH 424
LS+ G +H F+ D SH +
Sbjct: 431 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 490
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I L + +++ G+ K C HSE+LA+A+GL+ T +
Sbjct: 491 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 550
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR C DCH K +SKA REI++ D RFH F+ G+CSC D+W
Sbjct: 551 RVVKNLRFCLDCHEVAKIISKAY----NREIVVRDRVRFHKFMGGSCSCKDFW 599
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 246 ALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL + RM++ +PN+ +L+ L ACA V G+++H LR
Sbjct: 109 ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALR-------------- 154
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
QGL T ++V L+++Y +C + F+ M + N + + MV +R
Sbjct: 155 --QGLATSAYVQTGLLNLYAKCEQVALART--VFDGMAGDKN----LVAWSAMVSGYSRV 206
Query: 365 GQFDDTLNFMKKM 377
G ++ L ++M
Sbjct: 207 GMVNEALGLFREM 219
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----------------- 59
+P + T A + C + G Q+HA + G+ A++
Sbjct: 121 SPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALA 180
Query: 60 -GMFEKMP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F+ M ++N+ +W++M+ Y+ +G E + LF + GV AC++
Sbjct: 181 RTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAK 240
Query: 108 LKDHRVGKDVYDYM----ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSN 160
+GK V+ Y+ I++ E + ++DM+ KCG +E A G F+ EKD
Sbjct: 241 AGALDLGKWVHAYIDRKGITVDLE----LSTALIDMYAKCGLIERARGVFDAMVEKDTKA 296
Query: 161 LSLLKHGKEIH 171
S + G IH
Sbjct: 297 WSAMIVGFAIH 307
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 134/476 (28%), Positives = 202/476 (42%), Gaps = 133/476 (27%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
+ GK++H +K L + V +L++ YA C + A F +I + +VS+NA++
Sbjct: 143 FQQGKQLHCLAIKLG-LNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL F ++ ++PN +++ VL++CA + LGK
Sbjct: 202 GYARSSRPNE------------ALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKW 249
Query: 284 IHGYVLRHHIQLSTGVGIALI-------SIQGLGT--------GSFVWNSLIDMYGRCGA 328
IH YV ++ + V ALI S+ G + + W+++I Y G
Sbjct: 250 IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQ 309
Query: 329 IQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQYC 355
Q +EG+RYF M + Y + P ++ Y
Sbjct: 310 GQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYG 369
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEPL 405
CMVDLL RAG + F+ ++P +P S + N ++A+ + EL+
Sbjct: 370 CMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDS 429
Query: 406 SSGK-------------------------------------------VHSFIAGDTSHSL 422
G VH F +GD H +
Sbjct: 430 HGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYV 489
Query: 423 VHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSPG 467
+ L L E+K +GY+ K I HSEKLA++FGL++T PG
Sbjct: 490 STALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPG 549
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ +RV+KNLR+CGDCHS K +S +REII+ D RFHHF DG CSCGDYW
Sbjct: 550 TTIRVVKNLRVCGDCHSAAKLISSL----IDREIILRDVQRFHHFKDGKCSCGDYW 601
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK---CRYLKVAHCKFSKIKQKHLVSWNA 220
LK K+I +K L++DL + L++ + + AH F I Q +V +N+
Sbjct: 39 LKELKQIQAFSIKTH-LQNDLQILTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNS 97
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M GY ++ A+ F + + ++ P+ + +L AC K F+
Sbjct: 98 MFRGY------------SRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQ 145
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340
GK++H ++ GL +V +LI+MY C + + R F+
Sbjct: 146 GKQLHCLAIK----------------LGLNENPYVCPTLINMYAGCNDVDGAQ--RVFDE 187
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ +EP + Y ++ AR+ + ++ L+ +++
Sbjct: 188 I-----LEPCVVSYNAIITGYARSSRPNEALSLFRQL 219
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 159/592 (26%), Positives = 239/592 (40%), Gaps = 200/592 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDEG------------------V 101
+F+++P+R+V SWTS++ + V +F LL++E V
Sbjct: 35 LFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLGCV 94
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA------------ 149
A S+L V + V+ +I FE V ++D + K G M +A
Sbjct: 95 VSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAKVFDGMNESDHY 154
Query: 150 ---------------------------SGEFEEK----DFSNLSLLKHGKEIHPHHLKKD 178
SG F D L+ GK IH H + K
Sbjct: 155 FWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIH-HQVIKM 213
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
DLE + V S++D Y KC +++A F +K K++ SW AM+AGY +
Sbjct: 214 DLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGM----------- 262
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+G + A+E F +MI++ ++PN I+ VLAAC+ K
Sbjct: 263 -HGRAKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLK------------------- 302
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
EG +F MK E+ +EP +E Y CMV
Sbjct: 303 ----------------------------------EGXHWFNRMKCEFIVEPGIEHYLCMV 328
Query: 359 DLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLS-- 406
DLL RAG +K+M +P S C N ++ E +AR LFEL+ +
Sbjct: 329 DLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNCG 387
Query: 407 -----------------------------------------SGKVHSFIAGDTSHSLVHK 425
G++H + GD H K
Sbjct: 388 YYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHEK 447
Query: 426 ISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLR 471
I E L + +++++GYM K + HSEKLA+AFG++++ PGS +
Sbjct: 448 IYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSIIH 507
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+IKNLR+CGDC+ K + K REI++ D+ RFHHF +G+CSCGDYW
Sbjct: 508 IIKNLRICGDCNVVIKLIFKVVN----REIVVRDSKRFHHFKEGSCSCGDYW 555
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 143/531 (26%), Positives = 222/531 (41%), Gaps = 181/531 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE MPE+++ +W S++ + + G E + L+ + EGV D +
Sbjct: 63 VFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGV------------EPDGFT- 109
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+S+ +AC + L+ L G+ H + +K L
Sbjct: 110 MVSLL---SAC---------------------------AELATLVLGRRAHVYMVKVG-L 138
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEITGFTQ 239
+L NN+L+D YAKC + A F ++ ++++VSW +++ G A+ GF
Sbjct: 139 NKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGF--------- 189
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G+ ALE F M + + P+ I+ GVL AC+
Sbjct: 190 ---GKEALEHFKDMEREGLVPSEITFVGVLYACSH------------------------- 221
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
CG + NEG+ YF+ MK++Y++ P +E Y CMVD
Sbjct: 222 --------------------------CGIV--NEGFEYFKRMKEQYDIVPRIEHYGCMVD 253
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSGK 409
LL RAG + ++++ MP +P++ C + A L +LEP SG
Sbjct: 254 LLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGD 313
Query: 410 -------------------------------------------VHSFIAGDTSHSLVHKI 426
VH F+ GD +H I
Sbjct: 314 YVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAI 373
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
+ L+ + ++K GY+ K HSEK+A+AF LI+T PG+P+R+
Sbjct: 374 YKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIRI 433
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+C DCH K +SK ER+I++ D RFHHF DG+CSC DYW
Sbjct: 434 IKNLRVCADCHFAIKLISKV----FERDIVVRDCSRFHHFRDGSCSCRDYW 480
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 30/149 (20%)
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
Y + A+ F + +K +V+WN+++ G+AL G E AL + RM +
Sbjct: 56 YFESAYKVFELMPEKDIVAWNSVINGFALNGKPNE------------ALTLYKRMGSEGV 103
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
+P+ ++ +L+ACA++ LG+ H Y+++ GL N+
Sbjct: 104 EPDGFTMVSLLSACAELATLVLGRRAHVYMVK----------------VGLNKNLHANNA 147
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
L+D+Y +CG I +E + F+ M E N+
Sbjct: 148 LLDLYAKCGTI--SEARKIFDEMGIERNV 174
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 239/591 (40%), Gaps = 182/591 (30%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
CG CA L +F+ M R++ SW +M+ Y G + + LF +
Sbjct: 105 CGRNDCARL-VFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM-------------- 149
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
HR G + ++ +S AC + ++ +C K++
Sbjct: 150 HREGTHMSEFTLSSTI--CACAAKYAIN---EC------------------------KQL 180
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H LK L+S+ V +++D YAKC +K A F K+ ++ LV+W+++ AGY G
Sbjct: 181 HTIALKLA-LDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGL 239
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE AL F + ++ +LS +L+ACA + G ++H +L+
Sbjct: 240 HEE------------ALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILK 287
Query: 291 HHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGR---------- 325
+ V +L+ + +WN++I + R
Sbjct: 288 CGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMIL 347
Query: 326 -------------------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G ++K G YF ++ + +EP + Y CMVD+
Sbjct: 348 FEKMQQLGIFPNEVTYLSVLSVCSHAGLVEK--GRHYFSLLMSDRTVEPNVLHYSCMVDV 405
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP------ 404
L R+G+ D+ + KMPFEP+++ C N +A AA LF+LEP
Sbjct: 406 LGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNH 465
Query: 405 --LSS-----------------------------------GKVHSFIAGDTSHSLVHKIS 427
LS+ GKVH F+ G+ H + I
Sbjct: 466 VLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIY 525
Query: 428 EKLMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSPLRV 472
KL +Y E++K I C HSEKLAL+FGLIS P+ +
Sbjct: 526 NKLEEIYHEMRKFARRTSIE-CDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIII 584
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCHS K + ER +I+ D RFHHF DG+CSCGD+W
Sbjct: 585 HKNLRICGDCHSFMKIAAHIT----ERLVIVRDTNRFHHFKDGSCSCGDFW 631
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 35/178 (19%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HG IH L +D L N L++ Y KC A F + + +VSWN M+AGY
Sbjct: 80 HGLAIHF------GLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGY 133
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
T G+ AL+ FSRM + + +LS + ACA K++H
Sbjct: 134 ------------THSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLH 181
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
L+ L + SFV +++D+Y +C I K+ W + +M ++
Sbjct: 182 TIALK----------------LALDSNSFVGTAILDVYAKCNMI-KDACWVFEKMPER 222
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 199/477 (41%), Gaps = 135/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+++H +K L+ ++ V +L++ Y +C + A C F +I + +V +NAM+
Sbjct: 145 LEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL F M ++PN I+L VL++CA + LGK
Sbjct: 204 GYARRNRPNE------------ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
IH Y +H V ALI + GS W+++I Y G
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFA-KCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHG 310
Query: 328 AIQKN---------------------------------EGWRYFEMMKKEYNMEPAMEQY 354
+K+ EG +YF M ++ + P+++ Y
Sbjct: 311 KAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHY 370
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
MVDLL+RAG +D F+ K+P P+ + N D+AE + +FEL+
Sbjct: 371 GSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 430
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G VH F +GD S
Sbjct: 431 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 490
Query: 422 LVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSP 466
K+ L + E+K GY+ K I HSEKLA+ FGL++T P
Sbjct: 491 ATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 550
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +RV+KNLR+C DCH+ K +S R++++ D RFHHF DG CSCGD+W
Sbjct: 551 GTTIRVVKNLRVCRDCHNAAKLISLIFG----RKVVLRDVQRFHHFEDGKCSCGDFW 603
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 203/473 (42%), Gaps = 134/473 (28%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGY 225
G+++H L++ L + V L++ YAKC + +A F + K+LV+W+AM++GY
Sbjct: 194 GRQLHAQALRQG-LATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGY 252
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ G E AL F M ++P+ +++ V++ACA+ LGK +H
Sbjct: 253 SRVGMVNE------------ALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 300
Query: 286 GYVLRHHIQLSTGVGIALISIQ---GL---GTGSF---------VWNSLIDMYGRCGAIQ 330
Y+ R I + + ALI + GL G F W+++I + G ++
Sbjct: 301 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 360
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+G RY+ +M+ ++P+ME Y CM
Sbjct: 361 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQN-LGIKPSMENYGCM 419
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEP--- 404
VDLL R+G DD +F+ MP P+S C DIAE A + L ELEP
Sbjct: 420 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 479
Query: 405 -----LSS-----------------------------------GKVHSFIAGDTSHSLVH 424
LS+ G +H F+ D SH +
Sbjct: 480 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 539
Query: 425 KISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPL 470
+I L + +++ G+ K C HSE+LA+A+GL+ T +
Sbjct: 540 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 599
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR C DCH K +SKA REI++ D RFH F+ G+CSC D+W
Sbjct: 600 RVVKNLRFCLDCHEVAKIISKAYN----REIVVRDRVRFHKFMGGSCSCKDFW 648
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 246 ALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
AL + RM++ +PN+ +L+ L ACA V G+++H LR
Sbjct: 158 ALAVYRRMLRAGSPRPNSFTLAFALKACAAVPAPGEGRQLHAQALR-------------- 203
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
QGL T ++V L+++Y +C + F+ M + N + + MV +R
Sbjct: 204 --QGLATSAYVQTGLLNLYAKCEQVALART--VFDGMAGDKN----LVAWSAMVSGYSRV 255
Query: 365 GQFDDTLNFMKKM 377
G ++ L ++M
Sbjct: 256 GMVNEALGLFREM 268
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL----------------- 59
+P + T A + C + G Q+HA + G+ A++
Sbjct: 170 SPRPNSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALA 229
Query: 60 -GMFEKMP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSE 107
+F+ M ++N+ +W++M+ Y+ +G E + LF + GV AC++
Sbjct: 230 RTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAK 289
Query: 108 LKDHRVGKDVYDYM----ISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSN 160
+GK V+ Y+ I++ E + ++DM+ KCG +E A G F+ EKD
Sbjct: 290 AGALDLGKWVHAYIDRKGITVDLE----LSTALIDMYAKCGLIERARGVFDAMVEKDTKA 345
Query: 161 LSLLKHGKEIH 171
S + G IH
Sbjct: 346 WSAMIVGFAIH 356
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 151/588 (25%), Positives = 238/588 (40%), Gaps = 161/588 (27%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL-------KDH 111
L + + + +TS + ++ G+ + L ++ +G+ L +
Sbjct: 343 LALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRGL 402
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
G+ ++ Y + G++ V +L M+ + G A F++ +L
Sbjct: 403 SPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDD-------MLPD----- 450
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
PH ++ +++ YA L A F + K V WNAM
Sbjct: 451 PH----------VVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAM---------- 490
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR- 290
I G+TQ+G AL F RM+ + ++P+ +++ VL+A AQ+ + GK +H YV
Sbjct: 491 --IDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNS 548
Query: 291 HHIQLSTGVGIALISI--------------QGLGTGSF-VWNSLIDMYGRCGAIQK---- 331
+QLS VG ALI + G+G VWN++I+ Y G +K
Sbjct: 549 RRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEM 608
Query: 332 -----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
EG +F+ M++EY ++P +E Y CMVDLL
Sbjct: 609 FVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLG 668
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG + ++ M P + C N + + A +L +SG
Sbjct: 669 RAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYIL 728
Query: 409 ---------------KVHSFI------------------------AGDTSHSLVHKISEK 429
+V S + AGD SH +I
Sbjct: 729 LSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVM 788
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L ++ +K+ G++ K HSEKLALAFGLIST PG+ ++++KN
Sbjct: 789 LDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKN 848
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR C DCH+ K +S R R+I+ D RFHHFVDG+CSCGDYW
Sbjct: 849 LRACSDCHAVLKLIS----RITGRKIVFRDRNRFHHFVDGSCSCGDYW 892
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 163/614 (26%), Positives = 257/614 (41%), Gaps = 161/614 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC----SELKDHRVGK- 115
+F++MPERNV SWT+M+ Y G E LF+ + ++ V L++ R+ +
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241
Query: 116 -DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKH 166
++D M E + + ++ + + GR+ A F+E N+ +++
Sbjct: 242 CRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN 297
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ L + E + + +++ Y C L A F+ + K +V+ NAM+ +
Sbjct: 298 QQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFG 357
Query: 227 LGG-----------FREEITG--------FTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G RE+ G + + G ALE F M + ++PN SL
Sbjct: 358 QNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLIS 417
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ----GLGTGSFV-------- 315
VL+ CA + G+EIH ++R L V L+S+ L V
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKD 477
Query: 316 ---WNSLIDMYGR-----------------------------------CGAIQKNEGWRY 337
WNS+I Y + G ++K G
Sbjct: 478 VVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKK--GLEI 535
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP-- 389
F M+ +Y +E +E Y CMVDLL RAG+ ++ ++ ++KMP E + C
Sbjct: 536 FNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHM 595
Query: 390 --DIAEHAARHLFELEPLSSG--------------------------------------- 408
D+AE AA+ L LEP ++G
Sbjct: 596 KLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655
Query: 409 ----KVHSFIAGDTS----HSLVHKISEKLMRLYSE----------IKKIGYMKRIPACG 450
KVH F GD+S HS +++I E L L E + + +++ +
Sbjct: 656 VVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLE 715
Query: 451 -HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+A+GL+ G P+RV+KNLR+CGDCH+ K ++K REII+ D RF
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTG----REIILRDANRF 771
Query: 510 HHFVDGACSCGDYW 523
HHF DG+CSC DYW
Sbjct: 772 HHFKDGSCSCRDYW 785
>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
lyrata]
Length = 1057
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 214/501 (42%), Gaps = 142/501 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+NL +K GK++H H + + +D +V +SL+D YAKCR L A F I+ K+ +SW
Sbjct: 53 ANLGSIKLGKQVHCHFIVSE-YSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISW 111
Query: 219 NAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQ 259
AM++GYA G +EE I+GF Q G G A F+ M + +
Sbjct: 112 TAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVD 171
Query: 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV--- 315
+ + LS ++ ACA + G+++HG V+ + ALI + +
Sbjct: 172 ILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKD 231
Query: 316 ------------WNSLIDMYGRCGAIQK---------------NE--------------- 333
W SLI + G +K NE
Sbjct: 232 IFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGF 291
Query: 334 ---GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP--------- 381
G F+ M K+Y + P+++ Y C++DLL R+G D+ N + MPF P
Sbjct: 292 VAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALL 351
Query: 382 --------------------SSAEPCNPDI----------------AEHAARHLFELE-- 403
SS +P +P A R L ++E
Sbjct: 352 SACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVR 411
Query: 404 ---PLSSGKVHS----FIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM------------ 443
SS +V F AG+TSH+L I L +L E++ + GY+
Sbjct: 412 KDPGYSSVEVRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDE 471
Query: 444 --KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
K HSE+ A+A+GL+ PG+P+R++KNLR+CGDCH K++S+ EREI
Sbjct: 472 QEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT----EREI 527
Query: 502 IMIDNYRFHHFVDGACSCGDY 522
I+ D R+HHF G CSC D+
Sbjct: 528 IVRDATRYHHFKGGKCSCNDF 548
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 63/277 (22%)
Query: 65 MPERNVFSWTSMMGMYN-------VLGYYEEIVNLFYLLIDEGVY----KACSELKDHRV 113
MP R+ +W S++ N L + + + L D+ V+ KAC+ L ++
Sbjct: 1 MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
GK V+ + I ++ + VK ++DM+ KC ++ A F+ N
Sbjct: 61 GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKN------------- 107
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ +++ YAK + A F ++ K+L SW A+
Sbjct: 108 ----------TISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTAL------------ 145
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
I+GF Q G G A F+ M + + + + LS ++ ACA + G+++HG V
Sbjct: 146 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV---- 201
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
IAL G + F+ N+LIDMY +C +
Sbjct: 202 --------IAL----GFDSCVFISNALIDMYAKCSDV 226
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317
++P+ S ++ ACA + KLGK++H + + + V +
Sbjct: 38 LRPDDFVFSALVKACANLGSIKLGKQVHCHFI----------------VSEYSNDDVVKS 81
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
SL+DMY +C + + F+ ++ + + + MV A++G+ ++ L +++
Sbjct: 82 SLVDMYAKCRLLDCAKA--VFDSIRVKNTI-----SWTAMVSGYAKSGRKEEALELFRRL 134
Query: 378 PFE 380
P +
Sbjct: 135 PVK 137
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 163/614 (26%), Positives = 257/614 (41%), Gaps = 161/614 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC----SELKDHRVGK- 115
+F++MPERNV SWT+M+ Y G E LF+ + ++ V L++ R+ +
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEA 241
Query: 116 -DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--------SLLKH 166
++D M E + + ++ + + GR+ A F+E N+ +++
Sbjct: 242 CRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN 297
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ L + E + + +++ Y C L A F+ + K +V+ NAM+ +
Sbjct: 298 QQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCFG 357
Query: 227 LGG-----------FREEITG--------FTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G RE+ G + + G ALE F M + ++PN SL
Sbjct: 358 QNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLIS 417
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ----GLGTGSFV-------- 315
VL+ CA + G+EIH ++R L V L+S+ L V
Sbjct: 418 VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKD 477
Query: 316 ---WNSLIDMYGR-----------------------------------CGAIQKNEGWRY 337
WNS+I Y + G ++K G
Sbjct: 478 VVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKK--GLEI 535
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP-- 389
F M+ +Y +E +E Y CMVDLL RAG+ ++ ++ ++KMP E + C
Sbjct: 536 FNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHM 595
Query: 390 --DIAEHAARHLFELEPLSSG--------------------------------------- 408
D+AE AA+ L LEP ++G
Sbjct: 596 KLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655
Query: 409 ----KVHSFIAGDTS----HSLVHKISEKLMRLYSE----------IKKIGYMKRIPACG 450
KVH F GD+S HS +++I E L L E + + +++ +
Sbjct: 656 VVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLE 715
Query: 451 -HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+A+GL+ G P+RV+KNLR+CGDCH+ K ++K REII+ D RF
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTG----REIILRDANRF 771
Query: 510 HHFVDGACSCGDYW 523
HHF DG+CSC DYW
Sbjct: 772 HHFKDGSCSCRDYW 785
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/579 (26%), Positives = 229/579 (39%), Gaps = 177/579 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F KM ER+ SW+ M+G + G YE F LI R G ++
Sbjct: 57 LFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELI--------------RAGSKPDNF 102
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
S+ F AC R + + + G+ IH LK + L
Sbjct: 103 --SLPFVIKAC--RDTMGLIM-------------------------GRLIHSTVLK-NGL 132
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D V ++L+D YAKC + A F ++ +K LV+ M+AGYA +
Sbjct: 133 HLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA------------EC 180
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + F +M + P+ +++ ++ ACA++ + +H YV L +G
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240
Query: 301 IALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK------------- 331
A+I + GS W+++I YG G ++
Sbjct: 241 TAMIDMYA-KCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGI 299
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
++G + F +M Y + P ++ Y CMVDLL RAG+ D L
Sbjct: 300 IPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQAL 359
Query: 372 NFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK------------ 409
++ M E C D+AE AA+ L L+ + G
Sbjct: 360 RLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAG 419
Query: 410 -------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
++ F AGD SH ++I E L L +++
Sbjct: 420 RWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLE 479
Query: 439 KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GY+ + HSEKLA+AFGLI+T G+P+R+ KNLR+CGDCHS
Sbjct: 480 SAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHS 539
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VS +R+II+ D RFHHF +G CSCGDYW
Sbjct: 540 FCKLVSAIT----QRDIIVRDANRFHHFKEGICSCGDYW 574
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 31/177 (17%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K++H + + DL+V N L+ AK + L AH F+K++++ VSW+ M
Sbjct: 20 KQVHAQ-VTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVM------ 72
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
I GF + GD E + F +I+ +P+ SL V+ AC G +G+ IH
Sbjct: 73 ------IGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
VL++ GL +FV ++L+DMY +CG I + + F+ M K+
Sbjct: 127 VLKN----------------GLHLDNFVCSTLVDMYAKCGMIDNAK--QLFDRMPKK 165
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM-------FEKMPERNVFSW 73
C T LI R L+ G+ + + V++ A GM F++MP++++ +
Sbjct: 111 CRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTR 170
Query: 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMIS 123
T M+ Y G E LF + +G + AC++L + V+DY+ +
Sbjct: 171 TVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCA 230
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
++ + + ++DM+ KCG ++ + F+ + N+
Sbjct: 231 RRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNV 268
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96
++ELG + CG + + +F++M ++NV SW++M+G Y G E + LF+++
Sbjct: 236 DVELGTAMIDMYAKCG-SIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMM 294
Query: 97 IDEGV 101
++ G+
Sbjct: 295 LNSGI 299
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/628 (24%), Positives = 251/628 (39%), Gaps = 187/628 (29%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
+ SW + + +++E +NL+ ++ G +K+C+ L G
Sbjct: 18 QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK-------------------- 156
++ ++I E V+ ++ M+ KC + A F+E
Sbjct: 78 LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137
Query: 157 -DFSNLSLL-----KHGKEIH-------------PHHLK----------KDDLESDLLVN 187
FS+ LL K G ++ P HL + L+ DL V
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L+ Y +C + A F + +K L++WNAM++GYA G + L
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHV------------L 245
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
+ + +M T + P+ ++L GVL++CA + G+E+ + + + ALI++
Sbjct: 246 DLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMY 305
Query: 307 -------------QGLGTGSFV-WNSLIDMYGRCG----AIQ------------------ 330
G+ + + W ++I YG G A+Q
Sbjct: 306 ARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFV 365
Query: 331 -----------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
+G YF M+++Y ++P E Y C+VDLL RAG+ ++ + M
Sbjct: 366 SVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSV 425
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLS----------------------- 406
EP A C N ++AE A + E EP +
Sbjct: 426 EPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRV 485
Query: 407 --------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG----- 441
G++H F+AGD +H +I L L IK+ G
Sbjct: 486 RVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDN 545
Query: 442 -----YMKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
+ I G HSEKLA+AFGLI+T PG+ + VIKNLR+CGDCH K VS+
Sbjct: 546 DQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIV-- 603
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
+R++++ D RFHHF +G CSC DYW
Sbjct: 604 --DRQLVVRDATRFHHFKNGVCSCKDYW 629
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/635 (24%), Positives = 242/635 (38%), Gaps = 200/635 (31%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y C + L G QVHA +I FLG + ++MP
Sbjct: 13 YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ER+V SWT+M+ Y+ + E
Sbjct: 73 ERSVVSWTTMISGYSQTERHVE-------------------------------------- 94
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLES 182
LD+FIK R E+ S + GK++H L K + ES
Sbjct: 95 ---------ALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL-LVKTNFES 144
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V +SL+D YAK ++ A F + ++ +VS A+++GYA G EE
Sbjct: 145 HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEE--------- 195
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F ++ MQ N ++ + ++ A + + GK++H +LR + + +
Sbjct: 196 ---ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252
Query: 303 LISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK---------------- 331
LI + L WN+++ YGR G +
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 312
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+EG F+ + KE + Y C++DLL R+G+ + LN ++
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372
Query: 376 KMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSGK---------------- 409
MPFE + + N + E A+ L E+EP ++G
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432
Query: 410 ---------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
+H+F + + H I+ K+ ++ +IK G+
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + GHSEKLA+ FGL++T PG +RV+KNLR+C DCH+ K+
Sbjct: 493 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 552
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VSK EREI + D RFH G C+CGDYW
Sbjct: 553 VSKV----YEREISLRDKNRFHLLTHGNCTCGDYW 583
>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
Length = 781
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 157/615 (25%), Positives = 245/615 (39%), Gaps = 198/615 (32%)
Query: 36 NNLELGIQVHAHLI----VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVN 91
+ LE I+V L+ CG E+ +F MP R V +W M+G Y + +E +
Sbjct: 238 HGLEQDIKVGTSLLDMYCKCG-EVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFD 296
Query: 92 LFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
F + EG+ AC++ + G+ V+ Y++ +F + ++ +L+M+
Sbjct: 297 CFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYG 356
Query: 142 KCGRMEMAS---GEFEEKD----------------------------------------- 157
K G++E + G+ K
Sbjct: 357 KVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMST 416
Query: 158 ----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
F L L+H ++IH + + E+ L++N +++ YA+ + + F K+ K
Sbjct: 417 VVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMN-AVLHMYARSGDVVASREIFDKMVSK 475
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
++SWN M+ GYA+ +G G+TALE F M +QPN + VL AC
Sbjct: 476 DVISWNTMIMGYAI------------HGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC- 522
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
S+ GL +E
Sbjct: 523 -------------------------------SVSGL---------------------VDE 530
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----------S 383
GW +F +M +EY M P +E Y CM DLL R G + L F++ MP +P+ S
Sbjct: 531 GWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTAS 590
Query: 384 AEPCNPDIAEHAARHLFEL---------------------------------------EP 404
+ DIAE+AA +F+L EP
Sbjct: 591 RNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEP 650
Query: 405 LSSGKVH----SFIAGDTSHS---LVHKISEKLMRLYSEIKKIGYMK-RIPACG------ 450
+S ++H SF GD SHS +H++S+ L R E +P
Sbjct: 651 ISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKETDDTRNQSYPVPVATRTTTMP 710
Query: 451 --HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HS +LA+ FGLIS+ GSP+ V KN+R+C CH K +S R R I++ D+
Sbjct: 711 NKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLIS----RYSGRRIVVGDSKI 766
Query: 509 FHHFVDGACSCGDYW 523
+H F DG+C CGDYW
Sbjct: 767 YHEFSDGSCCCGDYW 781
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 30/172 (17%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L L G+ H +K LE D+ NSL+ FYAK ++ A F + + +V+W
Sbjct: 118 ARLGGLDEGRAAHGMVIKLG-LEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKG 277
N M+ GY G G AL F M ++Q +++ + LAAC
Sbjct: 177 NIMVDGYVSNGL------------GSLALACFQEMHDALEVQHDSVGIIAALAACCLEFS 224
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
GKEIHGYV+RH ++ VG SL+DMY +CG +
Sbjct: 225 SMQGKEIHGYVIRHGLEQDIKVG----------------TSLLDMYCKCGEV 260
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/503 (27%), Positives = 215/503 (42%), Gaps = 136/503 (27%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
M + C + + F K S ++ G+ IH ++ + ES + V NSL+ YA C
Sbjct: 108 QMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIR-NGFESLVFVQNSLLHIYAAC 166
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
+ A+ F +K++ LV+WN+M+ G+AL G E AL F M
Sbjct: 167 GDTESAYKVFELMKERDLVAWNSMINGFALNGRPNE------------ALTLFREMSVEG 214
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI----------- 306
++P+ ++ +L+A A++ +LG+ +H Y+L+ + ++ V +L+ +
Sbjct: 215 VEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQ 274
Query: 307 ----QGLGTGSFVWNSLI-----------------DMYGR------------------CG 327
+ + W SLI +M G+ CG
Sbjct: 275 RVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCG 334
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA--- 384
+ +EG+ YF MK+E + P +E Y CMVDLL+RAG +++ MP +P++
Sbjct: 335 ML--DEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWR 392
Query: 385 ---EPCNP----DIAEHAARHLFELEPLSSG----------------------------- 408
C + E A HL LEP SG
Sbjct: 393 TLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDG 452
Query: 409 --------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----------- 443
+V+ F GD SH + L ++ +K GY+
Sbjct: 453 VKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIE 512
Query: 444 ---KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
K HSEK+A+AF L++T PG+P+RV+KNLR+C DCH K ++K +RE
Sbjct: 513 EEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKI----YDRE 568
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I++ D RFHHF G+CSC DYW
Sbjct: 569 IVIRDRSRFHHFRGGSCSCKDYW 591
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 20/108 (18%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG 60
S++ PD TV L +L LELG +VH +L+ G ++L A G
Sbjct: 211 SVEGVEPDGFTVVSLL--SASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCG 268
Query: 61 -------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F +M ERN SWTS++ V G+ EE + LF + +G+
Sbjct: 269 AIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGL 316
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/489 (27%), Positives = 206/489 (42%), Gaps = 137/489 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY-LKVAHCKFSKIK 211
F K + L +L G+ +H + K + D+ V N+++ Y+ C + A F ++
Sbjct: 137 FVLKACAGLEVLNLGQTVHGS-VVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEMP 195
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
+ V+W+AM+ GYA + G A+ F M ++ P+ I++ +L+A
Sbjct: 196 KSDSVTWSAMIGGYA------------RVGRSTEAVALFREMQMAEVCPDEITMVSMLSA 243
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-W 316
C + +LGK I Y+ RH I V ALI + + + + V W
Sbjct: 244 CTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSW 303
Query: 317 NSLI---DMYGR--------------------------------CGAIQKNEGWRYFEMM 341
S+I M+GR G +++ G YF M
Sbjct: 304 TSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVER--GREYFGSM 361
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DI 391
K+Y + P +E Y CMVD+ R G + L F++ MP EP+ C +
Sbjct: 362 MKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKL 421
Query: 392 AEHAARHLFELEPLS-------------------------------------------SG 408
E + L + EPL
Sbjct: 422 GEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDN 481
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEK 454
+++ F+AGD SH +I E + + E+KK GY K HSEK
Sbjct: 482 EIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEK 541
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA+AFGL+ T PG+P+R++KNLR+C DCHS +K++SK +REIIM D RFHHF
Sbjct: 542 LAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKI----YDREIIMRDRNRFHHFKS 597
Query: 515 GACSCGDYW 523
G CSCGD+W
Sbjct: 598 GQCSCGDFW 606
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 126/304 (41%), Gaps = 41/304 (13%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLI-------------------VCGVELCAFLGMFEK 64
TY + + C L L LG VH ++ C + + +F++
Sbjct: 134 TYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDE----GVYKACSELKDHRVG 114
MP+ + +W++M+G Y +G E V LF + DE + AC++L +G
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIH 171
K + Y+ + V ++DMF KCG + A F EK + + + G +H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ L ++ + D A L C S + ++ + +M+ Y L
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSA--CSHSGLVERGREYFGSMMKKYKLVPKI 371
Query: 232 EE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
E + + + G + ALEF M ++PN + L +++AC FKLG++I
Sbjct: 372 EHYGCMVDMYCRTGLVKEALEFVRNM---PIEPNPVILRTLVSACRGHGEFKLGEKITKL 428
Query: 288 VLRH 291
+++H
Sbjct: 429 LMKH 432
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 29/165 (17%)
Query: 230 FREEITGFTQYGDG-ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
F I + Q G + AL + M+ + PN + VL ACA ++ LG+ +HG V
Sbjct: 99 FNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSV 158
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC-GAIQKNEGWRYFEMMKKEYNM 347
++ G V N+++ MY C G I N + F+ M K ++
Sbjct: 159 VKF----------------GFDCDIHVQNTMVHMYSCCAGGI--NSARKVFDEMPKSDSV 200
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ M+ AR G+ + + ++M AE C +I
Sbjct: 201 -----TWSAMIGGYARVGRSTEAVALFREMQM----AEVCPDEIT 236
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/634 (23%), Positives = 250/634 (39%), Gaps = 198/634 (31%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y C + L G QVHAH++ +L + + MP
Sbjct: 44 YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ERNV SWT+M+ Y+ G + E
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAE-------------------------------------- 125
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFE-EKDFSNLSLLKHGKEIHPHH--LKKDDLESD 183
L++FI+ R + EF ++ + + +++ H + K + ES
Sbjct: 126 ---------ALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESH 176
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ V +SL+D Y K ++ A F + ++ VS A+++GYA Q G
Sbjct: 177 MFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYA------------QLGLD 224
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH----------- 292
+ AL+ F ++ + MQ N ++ + +L + + + GK++HG +LR
Sbjct: 225 DEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSL 284
Query: 293 IQLSTGVGIALISIQGLGT----GSFVWNSLIDMYGRCGAIQK----------------- 331
I + + G L S + + WN+++ YGR G Q+
Sbjct: 285 IDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSV 344
Query: 332 ---------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
+EG F+++ KE N + Y C++DLL R+GQ L+ ++
Sbjct: 345 TLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEH 404
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK----------------- 409
MPFEP+ A C N + E A+ L ++EP ++G
Sbjct: 405 MPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDV 464
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+H+F + + H I+ K+ +Y ++K G++
Sbjct: 465 FRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFV 524
Query: 444 KRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+ GHSEKLA+ FGL++T PG ++V+KNLR+C DCH+ K+V
Sbjct: 525 PDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFV 584
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK REI + D RFH DGAC+CGDYW
Sbjct: 585 SKVYG----REISLRDKNRFHLLKDGACTCGDYW 614
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 36/168 (21%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAFLGMFE 63
VT+ + L +L G QVH ++ CG +L +F+
Sbjct: 244 VTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCG-KLLYSRRVFD 302
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDHRVG 114
MP+R+ SW +M+ Y G +E+V LF + +E V CS G
Sbjct: 303 NMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSHGGLVDEG 362
Query: 115 KDVYDYMISIKFEGNACVKRP----VLDMFIKCGRMEMASGEFEEKDF 158
D++D ++ E NA + V+D+ + G+++ A E F
Sbjct: 363 LDIFDLIVK---EQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPF 407
>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
Length = 903
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 149/565 (26%), Positives = 244/565 (43%), Gaps = 143/565 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF--------------YLLIDEGVYKACS 106
+F+++P N SW +M+ + G + V LF YL + E V
Sbjct: 380 LFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPE 438
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD--------- 157
E + G+ ++ ++S + + V+ M+ CG ++ A+ F+
Sbjct: 439 EARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVS 498
Query: 158 ----FSNLSLLKHGK-------------------------------------EIHPHHLK 176
S+LS HGK EI HL+
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLR 558
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEIT 235
+ES+L V +L Y +C L+ A F K+ ++ +V +NAM+A Y+ G E
Sbjct: 559 HSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGE-- 616
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL+ F RM Q +P+ S VL+AC+ G G+ + ++
Sbjct: 617 ----------ALKLFWRMQQEGSRPDEQSFVSVLSACSHG-----GLADEGWEIFRSMRQ 661
Query: 296 STGVGIA----------------------LISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
S G+ + LI + VW +L+ G C + +
Sbjct: 662 SYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLL---GACRKYRDVD 718
Query: 334 GWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
R M +E ++P E Y + ++LA AG++D+ +M + +
Sbjct: 719 RGRLANSMVRE--LDPGDESAYVVLSNILAGAGKWDEAAEVRTEME---------SRGLR 767
Query: 393 EHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------- 443
+ A + E++ +VH F+AGD SH +I +L RL++EI++IGY+
Sbjct: 768 KEAGKSWIEIKS----RVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRK 823
Query: 444 -----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERE 498
K C HSE+LA+A G++S+S + +RV+KNLR+C DCH+ TK++SK +E
Sbjct: 824 VDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKE-- 880
Query: 499 REIIMIDNYRFHHFVDGACSCGDYW 523
I++ D +RFHHFVDG+CSCGDYW
Sbjct: 881 --IVVRDTHRFHHFVDGSCSCGDYW 903
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 145/361 (40%), Gaps = 102/361 (28%)
Query: 38 LELGIQVHAHLIVCGVE------------LCAFLG----MFEKMPERNVFSWTSMMGMYN 81
L G ++HA ++ G+E C LG +F ++ R+ SWT+++ Y
Sbjct: 45 LSQGRRIHARIVSLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYT 104
Query: 82 VLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNAC 131
G + + +F+ + EGV KAC+ L D G+ ++ +++ +G +
Sbjct: 105 EHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSV 164
Query: 132 VKRPVLDMFIKCGRMEMASGEFE--EKD-----------------------FSNLSL--- 163
+ +L ++ CG + A FE E+D F + L
Sbjct: 165 LANLLLHIYGSCGCVASAMLLFEKMERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGV 224
Query: 164 ----------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
++ + IH +++ LE L+V+ +L YA+ +L A F
Sbjct: 225 RPARITLVIALTVCATIRQAQAIH-FIVRESGLEQTLVVSTALASAYARLGHLYQAKEVF 283
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
+ ++ +VSWNAML YA Q+G A F+RM+ + P+ ++L
Sbjct: 284 DRAAERDVVSWNAMLGAYA------------QHGHMSEAALLFARMLHEGISPSKVTLVN 331
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
C+ + G+ IHG L +GL + N+L+DMY RCG
Sbjct: 332 ASTGCSS---LRFGRMIHGCALE----------------KGLDRDIVLGNALLDMYTRCG 372
Query: 328 A 328
+
Sbjct: 373 S 373
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 134/334 (40%), Gaps = 96/334 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKA----------CSELKD 110
+F++ ER+V SW +M+G Y G+ E LF ++ EG+ + CS L
Sbjct: 282 VFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSL-- 339
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME------------------MASGE 152
R G+ ++ + + + + +LDM+ +CG E M +G
Sbjct: 340 -RFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVSWNTMIAGS 398
Query: 153 FEEKD-------FSNLSL--------------------------LKHGKEIHPHHLKKDD 179
++ F + L + G+++H +
Sbjct: 399 SQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR-IVSCG 457
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSK--IKQKH-LVSWNAMLAGYALGGFREEITG 236
S+ + +++ YA C + A F + ++ +H +VSWNA+ I+
Sbjct: 458 YASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAI------------ISS 505
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+Q+G G+ AL FF RM + PN I+ VL ACA G+ +H + LRH
Sbjct: 506 LSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDH-LRH----- 559
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G+ + FV +L MYGRCG+++
Sbjct: 560 ----------SGMESNLFVATALASMYGRCGSLE 583
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 39/218 (17%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL G+ IH + LE +L N L+ Y KC L FS+++ + SW +
Sbjct: 44 LLSQGRRIHAR-IVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTI- 99
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
IT +T++G + A+ F RM Q ++ + ++ VL ACA++ G+
Sbjct: 100 -----------ITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
IH +++ GL S + N L+ +YG CG + FE M+
Sbjct: 149 SIHAWIVE----------------SGLKGKSVLANLLLHIYGSCGCVAS--AMLLFEKME 190
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
++ + + + A++G L ++M E
Sbjct: 191 RD------LVSWNAAIAANAQSGDLGIALELFQRMQLE 222
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 153/635 (24%), Positives = 242/635 (38%), Gaps = 200/635 (31%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y C + L G QVHA +I FLG + ++MP
Sbjct: 45 YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ER+V SWT+M+ Y+ + E
Sbjct: 105 ERSVVSWTTMISGYSQTERHVE-------------------------------------- 126
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLES 182
LD+FIK R E+ S + GK++H L K + ES
Sbjct: 127 ---------ALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL-LVKTNFES 176
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V +SL+D YAK ++ A F + ++ +VS A+++GYA G EE
Sbjct: 177 HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEE--------- 227
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F ++ MQ N ++ + ++ A + + GK++H +LR + + +
Sbjct: 228 ---ALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284
Query: 303 LISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK---------------- 331
LI + L WN+++ YGR G +
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 344
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+EG F+ + KE + Y C++DLL R+G+ + LN ++
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404
Query: 376 KMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSGK---------------- 409
MPFE + + N + E A+ L E+EP ++G
Sbjct: 405 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 464
Query: 410 ---------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
+H+F + + H I+ K+ ++ +IK G+
Sbjct: 465 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 524
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ + GHSEKLA+ FGL++T PG +RV+KNLR+C DCH+ K+
Sbjct: 525 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 584
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VSK EREI + D RFH G C+CGDYW
Sbjct: 585 VSKV----YEREISLRDKNRFHLLTHGNCTCGDYW 615
>gi|125524834|gb|EAY72948.1| hypothetical protein OsI_00820 [Oryza sativa Indica Group]
Length = 370
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/432 (28%), Positives = 186/432 (43%), Gaps = 137/432 (31%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
++LS L+ G+E+H + +++ LE D V N+L+D Y KC L +A F + K+L+SW
Sbjct: 9 ASLSSLERGREMHAYAVRRGYLE-DNFVANALVDMYVKCGALLLARRLFDMLTNKNLISW 67
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
M+AGY + +G G A+ F +M + +QP+ S S +L AC
Sbjct: 68 TIMIAGYGM------------HGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC------ 109
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
S GL ++EGWR+F
Sbjct: 110 --------------------------SHSGL---------------------RDEGWRFF 122
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
M+ E+ +EP ++ Y CMVDLL G + F++ MP EP S+ C N
Sbjct: 123 NAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRN 182
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
+AE A +FELEP ++G
Sbjct: 183 VKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIE 242
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGH 451
K H F A + +H +I+E L + +++ G+ + CGH
Sbjct: 243 VRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGH 302
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
S KLA+AFG+++ S G P+RV KN R+C CH K++SK REII+ D+ RFHH
Sbjct: 303 SSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCG----REIILRDSNRFHH 358
Query: 512 FVDGACSCGDYW 523
F +G CSC YW
Sbjct: 359 FEEGRCSCRGYW 370
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/537 (27%), Positives = 222/537 (41%), Gaps = 156/537 (29%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+ C++L+ H G V+ +I FE + V+ ++ M+ + G + F+
Sbjct: 120 RTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGA------ 173
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+E DL+ ++++ AKC + A F ++ ++ V+WNAM+
Sbjct: 174 -----------------VEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMI 216
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
AGYA Q G AL+ F M ++ N +S+ VL+AC ++ G+
Sbjct: 217 AGYA------------QCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGR 264
Query: 283 EIHGYVLRHHIQLSTGVGIALI-----------------------------SIQGLGTGS 313
+H YV R+ ++++ +G AL+ +I GL
Sbjct: 265 WVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNG 324
Query: 314 FVWNSLIDMYG--RCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQ 353
F SL D++ + +Q N EG ++F+ M+ Y + P +E
Sbjct: 325 FGEESL-DLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEH 383
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y MVD+ RAG+ + LNF+ MP P C N ++ E A R + ELE
Sbjct: 384 YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELE 443
Query: 404 ---------------------PLSS----------------------GKVHSFIAGDTSH 420
+SS G+VH FI GD SH
Sbjct: 444 DKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSH 503
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I KL + ++ GY+ K HSEK+A+AFGLIS
Sbjct: 504 PRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKG 563
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV+ NLR+C DCH+ K +SK REII+ D RFHHF DG CSC DYW
Sbjct: 564 VVPIRVVMNLRICWDCHNVAKMISKI----FNREIIVRDRNRFHHFKDGECSCKDYW 616
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
MF++MPER+ +W +M+ Y G E +++F+L+ EGV AC+ L+
Sbjct: 200 MFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQV 259
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHG 167
G+ V+ Y+ K + ++DM+ KCG ++ A F +E++ S G
Sbjct: 260 LDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGG 319
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
++ + DL +D+ + LK C + ++ +++M Y +
Sbjct: 320 LAMNGFGEESLDLFNDMKREGVQPNGITFISVLK--GCSVVGLVEEGRKHFDSMRNVYGI 377
Query: 228 GGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
G E + + + G + AL F + M M+P+ + S +L AC K +LG+
Sbjct: 378 GPQLEHYGLMVDMYGRAGRLKEALNFINSM---PMRPHVGAWSALLHACRMYKNKELGE 433
>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g09950
gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 995
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 210/480 (43%), Gaps = 143/480 (29%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGY 225
GK+IH LK +++ + N+L+ Y KC + FS++ ++ V+WN+M++GY
Sbjct: 536 GKQIHGLALK-NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY 594
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E+ AL+ M+QT + ++ + VL+A A V + G E+H
Sbjct: 595 ----IHNELLA--------KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVH 642
Query: 286 GYVLRHHIQLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMYGRCGAIQ 330
+R ++ VG AL+ +++ T S+ WNS+I Y R G +
Sbjct: 643 ACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGE 702
Query: 331 K----------------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
+ EG+++FE M Y + P +E + C
Sbjct: 703 EALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSC 762
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPS------------SAEPCNPDIAEHAARHLFELEP 404
M D+L RAG+ D +F++KMP +P+ A ++ + AA LF+LEP
Sbjct: 763 MADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP 822
Query: 405 -------------LSSGK------------------------------VHSFIAGDTSHS 421
+ G+ VH F+AGD SH
Sbjct: 823 ENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHP 882
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLIST 464
I +KL L +++ GY +P G HSEKLA+AF L +
Sbjct: 883 DADVIYKKLKELNRKMRDAGY---VPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQ 939
Query: 465 SPGS-PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ P+R++KNLR+CGDCHS KY+SK E R+II+ D+ RFHHF DGACSC D+W
Sbjct: 940 RSSTLPIRIMKNLRVCGDCHSAFKYISKIEG----RQIILRDSNRFHHFQDGACSCSDFW 995
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F E + LK G+E+H H + ++ + + N L++ YAKC + A F +
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K VSWN+M ITG Q G A+E + M + D+ P + +L L++C
Sbjct: 378 KDSVSWNSM------------ITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
A +K KLG++IHG L+ I L+ V AL+++
Sbjct: 426 ASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTL 459
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 151/369 (40%), Gaps = 90/369 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F++MP RN SW ++ Y+ G ++E + ++ EG++ +AC E+
Sbjct: 58 VFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGS 117
Query: 111 HRV--GKDVYDYMISIKFEGNACVKRPVLDMFIKC----GRMEMASGEFEEKD------- 157
+ G+ ++ M + + +A V ++ M+ KC G A G+ E K+
Sbjct: 118 VGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSI 177
Query: 158 ----------------FSNL-------------SLLKHGKEIHPHHLK----------KD 178
FS++ SL+ + ++ K
Sbjct: 178 ISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKS 237
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L +DL V + L+ +AK L A F++++ ++ V+ N ++ G + EE T
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL- 296
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLA-ACAQVKGFKLGKEIHGYVLRHHIQLST 297
+ D + MI + I LS + A+ G K G+E+HG+V ++T
Sbjct: 297 -FMD-------MNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHV------ITT 342
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---NMEPAMEQY 354
G+ ++ G+G G L++MY +CG+I YF K +M ++Q
Sbjct: 343 GLVDFMV---GIGNG------LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQN 393
Query: 355 CCMVDLLAR 363
C ++ + R
Sbjct: 394 GCFIEAVER 402
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L K+ L+ D+ + N+L++ Y + A F ++ ++ VSW +++GY+ G +E
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK--GFKLGKEIHGYVLRH 291
AL F M++ + N + VL AC ++ G G++IHG + +
Sbjct: 86 ------------ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKL 133
Query: 292 HIQLSTGVGIALIS-----IQGLG-----------TGSFVWNSLIDMYGRCGAIQKNEGW 335
+ V LIS I +G S WNS+I +Y + G + +
Sbjct: 134 SYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAG--DQRSAF 191
Query: 336 RYFEMMK------KEYNMEPAMEQYCCMVD 359
R F M+ EY + C + +
Sbjct: 192 RIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 162/431 (37%), Gaps = 103/431 (23%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLN-----NLELGIQVHAHLIVCG-VELCAFLGMFE 63
+ SM +P+ +Y ++ P+ + L+ G +VH H+I G V+ +G
Sbjct: 300 MNSMIDVSPE----SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIG--- 352
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
++ MY G + +FY + D+ ++ MI+
Sbjct: 353 ----------NGLVNMYAKCGSIADARRVFYFMTDKDSVS--------------WNSMIT 388
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEF----EEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ N C V + + R ++ G F ++L K G++IH LK
Sbjct: 389 -GLDQNGCFIEAV-ERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG- 445
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ ++ V+N+LM YA+ YL FS + + VSWN+++ A R E +
Sbjct: 446 IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALA----RSERS---- 497
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
A+ F + + N I+ S VL+A + + +LGK+IHG L+++I
Sbjct: 498 ---LPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATT 554
Query: 300 GIALISIQGL----------------GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
ALI+ G + WNS+I Y + K +F +
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTG 614
Query: 344 EY-----------------NMEPAMEQYCC---------------MVDLLARAGQFDDTL 371
+ +E ME + C +VD+ ++ G+ D L
Sbjct: 615 QRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYAL 674
Query: 372 NFMKKMPFEPS 382
F MP S
Sbjct: 675 RFFNTMPVRNS 685
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 170/647 (26%), Positives = 262/647 (40%), Gaps = 161/647 (24%)
Query: 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY 86
L+F++ P+ N + + H I G+ L +F+ MP+RNV SWTSM+ Y G
Sbjct: 76 LLFEKMPQRNTVSWNGLISGH-IKNGM-LSEARRVFDTMPDRNVVSWTSMVRGYVRNGDV 133
Query: 87 EEIVNLFYLLIDEGVYKAC----SELKDHRV--GKDVYDYMISIKFEGNACVKRPVLDMF 140
E LF+ + + V L++ RV + ++D M E + ++ +
Sbjct: 134 AEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP----EKDVVAVTNMIGGY 189
Query: 141 IKCGRMEMASGEFEEKDFSNL--------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192
+ GR++ A F+E N+ ++GK L + E + + +++
Sbjct: 190 CEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLL 249
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----FREEITGFTQYGDGE---- 244
Y ++ A F + K +V N M+ G+ L G R G + +G
Sbjct: 250 GYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAM 309
Query: 245 -----------TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
AL F RM + + N SL VL+ C + GK++H ++R
Sbjct: 310 IKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEF 369
Query: 294 QLSTGVGIALISIQGLGTGSFV----------------WNSLIDMYGRCGAIQK------ 331
V LI++ + G+ V WNS+I Y + G ++
Sbjct: 370 DQDLYVASVLITMY-VKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFH 428
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
EG FE MK +Y +EP +E Y C+VDLL RA
Sbjct: 429 DMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRA 488
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG------ 408
Q ++ + ++KMP EP + C D+AE A L +LEP ++G
Sbjct: 489 DQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLS 548
Query: 409 -------------------------------------KVHSFIAGDTS----HSLVHKIS 427
KVH F GD+ ++ K+
Sbjct: 549 NMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKML 608
Query: 428 EKLMRLYSE----------IKKIGYMKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNL 476
EKL L E + + ++ + G HSEKLA+A+GL+ G P+RV+KNL
Sbjct: 609 EKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNL 668
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+CGDCHS K ++K REII+ D RFHHF DG CSC DYW
Sbjct: 669 RVCGDCHSAIKLIAKVTG----REIILRDANRFHHFKDGHCSCKDYW 711
>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
Length = 781
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 157/615 (25%), Positives = 244/615 (39%), Gaps = 198/615 (32%)
Query: 36 NNLELGIQVHAHLI----VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVN 91
+ LE I+V L+ CG E+ +F MP R V +W M+G Y + +E +
Sbjct: 238 HGLEQDIKVGTSLLDMYCKCG-EVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFD 296
Query: 92 LFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFI 141
F + EG+ AC++ + G+ V+ Y++ +F + ++ +L+M+
Sbjct: 297 CFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYG 356
Query: 142 KCGRMEMAS---GEFEEKD----------------------------------------- 157
K G++E + G+ K
Sbjct: 357 KVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMST 416
Query: 158 ----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
F L L+H ++IH + + E+ L++N +++ YA+ + + F K+ K
Sbjct: 417 VVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMN-AVLHMYARSGDVVASREIFDKMVSK 475
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
++SWN M+ GYA+ +G G+TALE F M +QPN + VL AC
Sbjct: 476 DVISWNTMIMGYAI------------HGQGKTALEMFDEMKYNGLQPNESTFVSVLTAC- 522
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
S+ GL +E
Sbjct: 523 -------------------------------SVSGL---------------------VDE 530
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----------S 383
GW +F +M +EY M P +E Y CM DLL R G + L F++ MP +P+ S
Sbjct: 531 GWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTAS 590
Query: 384 AEPCNPDIAEHAARHLFEL---------------------------------------EP 404
+ DIAE+AA +F+L EP
Sbjct: 591 RNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEP 650
Query: 405 LSSGKVH----SFIAGDTSHS---LVHKISEKLMRLYSEIKKIGYMK-RIPACG------ 450
+S ++H SF GD SHS +H++S L R E +P
Sbjct: 651 ISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEETDDTRNQSYPVPVATRTTTMP 710
Query: 451 --HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HS +LA+ FGLIS+ GSP+ V KN+R+C CH K +S R R I++ D+
Sbjct: 711 NKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLIS----RYSGRRIVVGDSKI 766
Query: 509 FHHFVDGACSCGDYW 523
+H F DG+C CGDYW
Sbjct: 767 YHEFSDGSCCCGDYW 781
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 30/172 (17%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ L L G+ H +K LE D+ NSL+ FYAK ++ A F + + +V+W
Sbjct: 118 ARLGGLDEGRAAHGMVIKLG-LEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTW 176
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKG 277
N M+ GY G G AL F M ++Q +++ + LAAC
Sbjct: 177 NTMVDGYVSNGL------------GSLALACFQEMHDALEVQHDSVGIIAALAACCLEVS 224
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
GKEIHGYV+RH ++ VG SL+DMY +CG +
Sbjct: 225 SMQGKEIHGYVIRHGLEQDIKVG----------------TSLLDMYCKCGEV 260
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 156/614 (25%), Positives = 249/614 (40%), Gaps = 181/614 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP+R+ +WT+M + GY D ++V++
Sbjct: 214 LFDEMPKRDELTWTTM-----ITGYVRN--------------------DDLNGAREVFEA 248
Query: 121 MI-SIKFEGNACVKRPV-----LDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHG 167
M+ ++ NA + V + C +M +F++ ++ N+ + G
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMG 308
Query: 168 KEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
K++H + LK ++L + L V+N+L+ Y K + A F + +++++WNA+L+
Sbjct: 309 KQVHAYILK-NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 224 GYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
GY G EE I+G Q G G+ L+ F +M +P +
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSFV--- 315
+G L AC+ + + G+++H ++ + S VG A+IS+ FV
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487
Query: 316 ------WNSLIDMYGRCG----AIQ-----------------------------KNEGWR 336
WNS+I G+ G AI+ +G
Sbjct: 488 SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRH 547
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC--- 387
YF M + Y + P + Y MVDL RAG F + MP +P + C
Sbjct: 548 YFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIH 607
Query: 388 -NPDIAEHAARHLFELEPLSSG-------------------------------------- 408
N D+ AA LF+L P + G
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSW 667
Query: 409 -----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPAC 449
KVH F+ D H V + L +L E+KK+GY+ K
Sbjct: 668 IEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALS 727
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+ FG++ PG+ +RV KN+R+CGDCH+ K++SK + REII+ D RF
Sbjct: 728 THSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVAR----REIIVRDRKRF 783
Query: 510 HHFVDGACSCGDYW 523
HHF +G CSC DYW
Sbjct: 784 HHFKNGDCSCRDYW 797
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 96/444 (21%), Positives = 168/444 (37%), Gaps = 112/444 (25%)
Query: 25 YALIFQRCPKLN--NLELGIQVHAHLIVCGVE------------------LCAFLGMFEK 64
YA Q C + + L VHAH+I G + L +FE+
Sbjct: 14 YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEE 73
Query: 65 MPERNVFSWTSMMGMYNVLGYYE---EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
+P + + T+++ Y LG E EI N L + + V+ Y+ M
Sbjct: 74 IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVF---------------YNAM 118
Query: 122 IS-IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL----------KHGKEI 170
I+ G+ L++F M +F DF+ S+L + ++
Sbjct: 119 ITGYAHNGDG---HSALELF-----RAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM 170
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAK--------CRYLKVAHCKFSKIKQKHLVSWNAML 222
H +K V N+L+ Y K C + A F ++ ++ ++W M+
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMI 230
Query: 223 AGYA----LGGFREE---------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
GY L G RE I+G+ G + AL +M +Q + I
Sbjct: 231 TGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDI 290
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ----LSTGVGIALISIQGLGT-------- 311
+ + +++ACA V F++GK++H Y+L++ + V ALI++
Sbjct: 291 TYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350
Query: 312 -------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
WN+++ Y G ++ E +FE M + + M+ LA+
Sbjct: 351 FYAMPVRNIITWNAILSGYVNAGRME--EAKSFFEEMPVK-----NLLTLTVMISGLAQN 403
Query: 365 GQFDDTLNFMKKMPFEPSSAEPCN 388
G D+ L K+M + EPC+
Sbjct: 404 GFGDEGLKLFKQMRLD--GFEPCD 425
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 117/308 (37%), Gaps = 58/308 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY-ALGG----------------- 229
N L++ Y K L A F +I ++ ++ Y ALG
Sbjct: 52 NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA--------------- 271
+ ITG+ GDG +ALE F M + D +P+ + + VL+A
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171
Query: 272 CAQVKGFK--LGKEIHGYVLRHHIQLSTGVGI---ALISIQGL-----GTGSFVWNSLID 321
CA VK + + +L +++ ++ +GI A++S + L W ++I
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMIT 231
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
Y R + N FE M +E + M+ G F + L +KM F
Sbjct: 232 GYVRNDDL--NGAREVFEAM-----VENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG 284
Query: 382 SSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAG---DTSHSLVHKISEKLMRLYSEIK 438
+ A ++ + +VH++I + +HS +S L+ LY +
Sbjct: 285 IQFDDITYTTIISACANVGSFQ--MGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNN 342
Query: 439 KIGYMKRI 446
K+ ++I
Sbjct: 343 KVDEARKI 350
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L + M L + C +A C L LE G Q+HA L+ G E +G
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
+F MP ++ SW SM+ G+ + + LF ++ EGV+
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVF 523
>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 754
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/581 (24%), Positives = 240/581 (41%), Gaps = 179/581 (30%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
G+FE M +R+ +WT+M+ G E +++F + EGV G D Y
Sbjct: 236 GVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGV------------GIDQYT 283
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ + CG L+ + GK+IH + ++
Sbjct: 284 FG----------------SILTACG---------------ALAASEEGKQIHAYTIRTL- 311
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ ++ V ++L+D Y+KCR +++A F ++ K+++SW AM+ GY Q
Sbjct: 312 YDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYG------------Q 359
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL----RHHIQL 295
G GE A+ FS M ++PN +L V+++CA + + G + H L R +I +
Sbjct: 360 NGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITV 419
Query: 296 STGVGI---------------------------ALIS-------------------IQGL 309
S+ + AL+S ++G+
Sbjct: 420 SSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGV 479
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+ ++ R G ++K G YF M++++ + + Y CM+DL +R+G+ +
Sbjct: 480 KPNGVTFIGVLSACSRSGLVEK--GCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKE 537
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------- 408
F+++MP P + C + +I + AA +L + +P +
Sbjct: 538 AEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHAS 597
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+VH F A D SH I EKL L S+
Sbjct: 598 KGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSK 657
Query: 437 IKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+ + GY + + HSEKLA+AFGLI P+RV+KNLR+C DC
Sbjct: 658 MAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDC 717
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ TK++SK R+I++ D RFH F +G CSCGD+W
Sbjct: 718 HNATKFISKITG----RDILVRDAVRFHKFSNGICSCGDFW 754
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ +L N+L+ A R L F+ + Q+ VS+NA++AG++ G G +
Sbjct: 73 DPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRA 132
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
E A+ +R ++P+ I++SG++ A + + LG+++H ++R
Sbjct: 133 LLREEAVVDGAR-----VRPSRITMSGMVMAASALGDRALGRQVHCQIMR---------- 177
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G G +F W+ L+DMY + G I + R F+ M
Sbjct: 178 ------LGFGAYAFTWSPLVDMYAKMGLI--GDAKRVFDEM 210
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/481 (29%), Positives = 201/481 (41%), Gaps = 134/481 (27%)
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
+LS L+ G +H H + SD V +L+ Y+KC L VA F I+ + +V+WN
Sbjct: 121 DLSALRTGMAVHAHSVLLG-FGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWN 179
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
AM++GY Q G E A+E + M + P++ + L+ACAQ
Sbjct: 180 AMISGY------------EQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALD 227
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGS------------FVWNSLIDMYG 324
LG+E+ ++ + +S +G AL+++ GL + + W S+I YG
Sbjct: 228 LGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYG 287
Query: 325 RCG----AIQ-----------------------------KNEGWRYFEMMKKEYNMEPAM 351
G AI+ NEG F+ MK+ Y + P
Sbjct: 288 MHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRA 347
Query: 352 EQYCCMVDLLARAGQFDDTLNFM-KKMPFEPSSA------EPC----NPDIAEHAARHLF 400
E YC MVD+ RAG DD + F+ +P EP C N ++ A L
Sbjct: 348 EHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLI 407
Query: 401 ELEP--------LSS-----------------------------------GKVHSFIAGD 417
LEP LS+ G H F G+
Sbjct: 408 ALEPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGE 467
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLI- 462
SH +I L L I GY+ + HSEKLA+A+GL+
Sbjct: 468 KSHQQTREIYRYLEELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMM 527
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
S+ +P+RVIKNLR+CGDCH K++S E REII+ D +RFHHF DG CSC +Y
Sbjct: 528 SSGSTAPIRVIKNLRICGDCHLAIKFMSSVE----SREIIVRDKHRFHHFKDGKCSCLEY 583
Query: 523 W 523
W
Sbjct: 584 W 584
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD + T+ C + L+LG +V ++ +++ FLG
Sbjct: 208 PD--SATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKAR 265
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+++ ERNV +WTSM+ Y + G+ E + LF+L+ EG V AC+
Sbjct: 266 DWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAG 325
Query: 110 DHRVGKDVYDYM 121
G++ +D M
Sbjct: 326 LVNEGRNAFDSM 337
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 121/293 (41%), Gaps = 55/293 (18%)
Query: 35 LNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMPERNVFSWTSM 76
L+ L G+ VHAH ++ G +L +F+ + +R+V +W +M
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181
Query: 77 MGMYNVLGYYEEIVNLF------YLLIDEGVY----KACSELKDHRVGKDVYDYMISIKF 126
+ Y G E + ++ ++ D + AC++ +G++V ++S +
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQM 241
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHGKEIHPH--------HL 175
+ + + +++M+ +CG + A F +E++ + + G +H H HL
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHL 301
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-- 233
+ + + N+ + F A +A C + + + ++++M Y L E
Sbjct: 302 MRREGPTP---ND--VTFVA-----VLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYC 351
Query: 234 --ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
+ + + G + A++F I + P + +L AC K F LG E+
Sbjct: 352 SMVDMYGRAGLLDDAMQFICDSIPEEPGPEV--WTAMLGACKMHKNFNLGVEV 402
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 151/589 (25%), Positives = 233/589 (39%), Gaps = 197/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ M +R+ +SW+ ++G Y +G + +F L+ G V +AC +LKD
Sbjct: 107 LFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKD 166
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ G+ ++ C+ +KCG
Sbjct: 167 LKCGRLIH------------CIT-------LKCG-------------------------- 181
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
L+ V +L+D YA+C+ ++ AH F K+ ++ L +W M+ A G
Sbjct: 182 ---------LDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGV 232
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E +L FF RM + P+ ++L V+ ACA++ K IH Y+
Sbjct: 233 PVE------------SLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYING 280
Query: 291 HHIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGRCGAIQK--- 331
L +G A+I + GS W+++I YG G +K
Sbjct: 281 TGYSLDVILGTAMIDMYA-KCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALE 339
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
EG R+F M EY + P ++ Y CMVDLL
Sbjct: 340 LFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLL 399
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG+ D+ L ++ MP E C + D+AE AR L +L+ G
Sbjct: 400 GRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYV 459
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K++ F GD +H ++I +
Sbjct: 460 LLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYK 519
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L RL +++ GY +K+ HSEKLA+AFGL+ G P+R+ K
Sbjct: 520 MLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITK 579
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ K+VS E ++ II+ D RFHHF +G CSC DYW
Sbjct: 580 NLRVCGDCHTFCKFVSLIE----QKTIIVRDAKRFHHFKEGVCSCRDYW 624
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 49/196 (25%)
Query: 18 PDEC---TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------------- 60
PD+ TV YA C KL + +HA++ G L LG
Sbjct: 250 PDKVALVTVVYA-----CAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVE 304
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACS 106
+F++M RNV +W++M+ Y G E+ + LF +++ G+ ACS
Sbjct: 305 SARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACS 364
Query: 107 EL----KDHRVGKDVYD-YMISIKFEGNACVKRPVLDMFIKCGR----MEMASGEFEEKD 157
+ R ++D Y ++ + C ++D+ + GR +EM G EKD
Sbjct: 365 HAGLIEEGQRFFSSMWDEYGVTPDVKHYTC----MVDLLGRAGRLDEALEMIEGMPVEKD 420
Query: 158 FSNLSLLKHGKEIHPH 173
L IH H
Sbjct: 421 EVLWGALLGACRIHRH 436
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 150/597 (25%), Positives = 237/597 (39%), Gaps = 170/597 (28%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDEGVYKACSELKDH------ 111
+ + + P+ +TS + ++ G + + L +L+ G+ L
Sbjct: 82 VALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACGG 141
Query: 112 -RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
VG+ ++ Y + + G V +L M+ + G A F+ G +
Sbjct: 142 LAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLFD------------GMQP 189
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
PH ++ +++ YAK L A F + K L+ WNAM+ GY
Sbjct: 190 DPH----------VVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMMDGY----- 234
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
TQ+G AL F RM+++ ++P+ +S+ L+A AQ+ + G+ +H +V
Sbjct: 235 -------TQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTN 287
Query: 291 ---HHIQLSTGVGIALISI--------------QGLGTGS---FVWNSLIDMYGRCGAIQ 330
++L+ VG ALI + LG G WN++++ Y G +
Sbjct: 288 SSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSR 347
Query: 331 K---------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ +EG F M +EY +EP +E Y CM
Sbjct: 348 EALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCM 407
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHL------- 399
VDLL RAG+ ++ ++ M A C N ++ + A HL
Sbjct: 408 VDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANGLAN 467
Query: 400 -------------------------------FELEPLSSG-----KVHSFIAGDTSHSLV 423
+ EP S +V F+AGD SH
Sbjct: 468 SGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSHPRA 527
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSP 466
+I KL + + G++ R HSEKLALAFGLIST P
Sbjct: 528 AEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLISTPP 587
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ ++++KNLR C DCH+ K VS+ R+I+ D RFHHFVDG+C+CGDYW
Sbjct: 588 GTAIKIVKNLRACADCHAVLKLVSEVTG----RKIVFRDRNRFHHFVDGSCTCGDYW 640
>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 170/647 (26%), Positives = 247/647 (38%), Gaps = 199/647 (30%)
Query: 16 TNPDECTVTYAL-----IFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFL 59
TNP + +A I Q C +L G Q+H L+V G V+L A
Sbjct: 51 TNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAAC 110
Query: 60 G-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
G +F+ MP+RNVF W ++ Y G E V L+ +++ GV
Sbjct: 111 GQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEP--------- 161
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
D + Y + +K AC +LD L+ G+E+H
Sbjct: 162 ---DNFTYPLVLK----ACAA--LLD-------------------------LETGREVH- 186
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ D+ V ++D YAKC + A F I + V WN+M+A Y
Sbjct: 187 QRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYG------ 240
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q G AL M + P +L ++A A G+E+HG+ R
Sbjct: 241 ------QNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRG 294
Query: 293 IQL--------------STGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK------ 331
L S V +A + + L V WN++I YG G +
Sbjct: 295 FGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFN 354
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
E +F +M Y+++P ++ Y C++D+L
Sbjct: 355 KMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGH 414
Query: 364 AGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----- 408
G+F++ + +K M EP S C N ++ E A + L ELEP +G
Sbjct: 415 TGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHL 474
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
K H F+ GD SH +I +L
Sbjct: 475 SNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGEL 534
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
RL + GY+ KR HSE+LA+AFGLIST PG+ L V KNL
Sbjct: 535 ERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNL 594
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCH K +S+ +REII+ D R+HHFV+G CSC DYW
Sbjct: 595 RVCEDCHVVIKLISQIV----QREIIIRDVNRYHHFVNGECSCKDYW 637
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 137/497 (27%), Positives = 206/497 (41%), Gaps = 148/497 (29%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++ H +K LE++L V N+L+ Y ++ A F + + SWN ML+GYA
Sbjct: 121 GEQVRVHAIKLG-LENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYA 179
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
G +E I+G Q G AL+ F M+ M PN +L+
Sbjct: 180 RLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLAS 239
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-----------------LG 310
LAACA + G+ +H Y+ +++IQ++ + LI + L
Sbjct: 240 SLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLK 299
Query: 311 TGSFVWNSLIDMYGRCGA------------IQK---------------------NEGWRY 337
+ WN++I + G I+K EG Y
Sbjct: 300 RKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYY 359
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
FE M Y ++P +E Y C+VDLL RAG+ + + M P A C
Sbjct: 360 FESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHK 419
Query: 388 NPDIAEHAARHLFELEP-----------------------------LSSGK--------- 409
+ ++ E + + EL+P SGK
Sbjct: 420 DAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSI 479
Query: 410 -----VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG-------------- 450
H F+ GD SH ++ L + +++K GY IP G
Sbjct: 480 ELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGY---IPESGEVLLDIDDNEDRET 536
Query: 451 ----HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
HSEKLA+AFGL++T+P +P+R++KNLR+C DCH K++SK +REII+ D
Sbjct: 537 ALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKV----YDREIIVRDR 592
Query: 507 YRFHHFVDGACSCGDYW 523
R+HHF DG CSC DYW
Sbjct: 593 IRYHHFKDGTCSCNDYW 609
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 158/589 (26%), Positives = 242/589 (41%), Gaps = 176/589 (29%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
EL A +F++ P +++F W +++ + + EE + +++ RV
Sbjct: 129 ELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARL------------ADMGRLRV 176
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
D Y Y +K AC+ S++ +EIH H
Sbjct: 177 PVDSYSYAHGLK----ACIA----------------------ASTSHVPASALVREIHAH 210
Query: 174 HLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+++ L + V +L+D YAK + A F+ + ++++VSW AM+ YA +
Sbjct: 211 AVRRGYGLHTH--VATTLIDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYA----KN 264
Query: 233 EITGFTQYGDGETALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E G A+ F M+ +D + PN++++ +L A A V GK +H Y+LR
Sbjct: 265 ERPG--------DAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILR 316
Query: 291 HHIQLSTGVGIALISIQ----------------GLGTGSFVWNSLIDMYGRCG----AIQ 330
V AL+++ G WN+LI YG G A+Q
Sbjct: 317 RGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQ 376
Query: 331 K-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+EG R FE M +YN+ P E Y CMVDLL
Sbjct: 377 VFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMV-DYNVTPRAEHYACMVDLL 435
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG D+ + ++ M PS C + + AE A LF+LEP ++G
Sbjct: 436 GRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQLFDLEPRNAGNYV 495
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
++H F++ D + + ++
Sbjct: 496 LLADIYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRLHMFVSVDNKNPQIEELQA 555
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
+ +++K GY+ A GHSEKLA+AFGLI+T G +R+ K
Sbjct: 556 LIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKILLGHSEKLAVAFGLINTGRGEVIRITK 615
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCHS TK++SK EREII+ D RFHHF DG CSCGDYW
Sbjct: 616 NLRLCEDCHSVTKFISKYA----EREIIVRDVNRFHHFRDGICSCGDYW 660
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/476 (29%), Positives = 201/476 (42%), Gaps = 135/476 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+ IH LK L SD V SL+D YAKC ++ A F ++ K LV+W M+
Sbjct: 117 LQIGRVIHDVVLKHG-LLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIG 175
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
YA E +L F RM + + P+ +++ V+ ACA++ +
Sbjct: 176 AYADCNAYE-------------SLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARF 222
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGS----------------FVWNSLIDMYGRCG 327
+ Y++R+ L +G A+I + GS W+++I YG G
Sbjct: 223 ANDYIVRNGFSLDVILGTAMIDMYA-KCGSVESAREVFDRMKEKNVISWSAMIAAYGYHG 281
Query: 328 ---------------AIQKN------------------EGWRYFEMMKKEYNMEPAMEQY 354
AI N EG R+F M +E+ + P ++ Y
Sbjct: 282 RGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHY 341
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEP 404
CMVDLL RAG+ D+ L ++ M E C ++AE AA L EL+P
Sbjct: 342 TCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQP 401
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
+ G K + F GD SH
Sbjct: 402 QNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHP 461
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+I E LM L +++ GY+ K+ HSEKLA+AFGLI+ G
Sbjct: 462 QSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEG 521
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R+ KNLR+CGDCH+ +K VS + R II+ D RFHHF DG CSCGDYW
Sbjct: 522 EPIRISKNLRVCGDCHTFSKMVSSIMR----RSIIVRDANRFHHFNDGTCSCGDYW 573
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
H +++H H + L+ DL++ N L+ YA+ + + A+ F + + +W+ M+ G+
Sbjct: 18 HIRQVHAHVVANGTLQ-DLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGF 76
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
A + GD F +++ + P+ +L V+ C ++G+ IH
Sbjct: 77 A------------KAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIH 124
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
VL+H GL + FV SL+DMY +C ++ + R FE M
Sbjct: 125 DVVLKH----------------GLLSDHFVCASLVDMYAKCIVVEDAQ--RLFERM 162
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 148/571 (25%), Positives = 245/571 (42%), Gaps = 148/571 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ MP N F W +M+ Y+ +G V+++ +++ GV K +
Sbjct: 75 VFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTA 134
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---DFSNLSLLKHG 167
+ G++++D+++ + F N V+ ++ ++ G + +A G F+ D +++ G
Sbjct: 135 VKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISG 194
Query: 168 ----KEIHPHHLKKDDLESDLLVNNS--LMDFYAKCRYLK-------VAHCKFSKIKQKH 214
K+ D++E ++ +S L+ + C LK V F K+ ++
Sbjct: 195 YNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRNYFDKMPERD 254
Query: 215 LVSWNAMLAGY-ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
VSW AM+ GY + F+E L F M +++P+ ++ +L ACA
Sbjct: 255 FVSWTAMIDGYLQVNRFKE-------------VLSLFREMQAANIKPDEFTMVSILTACA 301
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ +LG+ I Y+ ++ I++ SFV N+LIDMY CG ++K
Sbjct: 302 HLGALELGEWIKAYIDKNEIKID----------------SFVGNALIDMYFNCGNVEK-- 343
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF--------------MKKMPF 379
R F M + + ++ LA G ++ L+ +K MP
Sbjct: 344 AIRIFNAMPHRDKI-----SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVIKNMPV 398
Query: 380 EPSSAE------PC----NPDIAEHAARHLFELEPLS----------------------- 406
+P+S C + ++AE AA+ + ELEP +
Sbjct: 399 KPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEV 458
Query: 407 --------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+G VH F+AGD H +I KL + ++K GY
Sbjct: 459 RKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDT 518
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K HSEKLA+AFGLIS+ PG +R++KNLRMC DCH YV+K
Sbjct: 519 SEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCH----YVAKL 574
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ RE+I+ D RFHHF G+CSC DYW
Sbjct: 575 VSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 4 KNVTLLLQSMDLTN--PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
K V L + M N PDE T+ I C L LELG + A++ +++ +F+G
Sbjct: 272 KEVLSLFREMQAANIKPDEFTMVS--ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGN 329
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+F MP R+ SWT+++ + GY EE +++F ++ +
Sbjct: 330 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASI 387
>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
Length = 686
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 141/490 (28%), Positives = 213/490 (43%), Gaps = 134/490 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+NL + HG+++H H + + +D +V +SL+D YAKC L A F I+ K+ +SW
Sbjct: 184 ANLGSIDHGRQVHCHFIV-SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISW 242
Query: 219 NAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQ 259
AM++GYA G +EE I+GF Q G G A F+ M + +
Sbjct: 243 TAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVD 302
Query: 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVL--------------------RHHIQLSTG 298
+ + LS ++ ACA + G+++HG L RH +S
Sbjct: 303 ILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWT 362
Query: 299 ---VGIA--------------LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
VG+A ++S G+ + LI G ++K G F+ M
Sbjct: 363 SLIVGMAQHGQAEKALALYDDMVS-HGVKPNEVTFVGLIYACSHVGFVEK--GRELFQSM 419
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNPD----- 390
K+Y + P+++ Y C++DLL R+G D+ N + MPF P C
Sbjct: 420 TKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQM 479
Query: 391 ---IAEH-------------------------------AARHLFELE----PLSSG---- 408
IA+H A R L E+E P S
Sbjct: 480 GIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 539
Query: 409 -KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM--------------KRIPACGHS 452
+ F AG+TSH L I L +L E++ + GY+ K HS
Sbjct: 540 KETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHS 599
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
E+ A+A+GL+ PG+P+R++KNLR+CGDCH K++S+ EREII+ D R+HHF
Sbjct: 600 ERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT----EREIIVRDATRYHHF 655
Query: 513 VDGACSCGDY 522
G CSC D+
Sbjct: 656 KGGKCSCNDF 665
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K +H H +K ++ L N +L++ Y KC A F ++ + ++W ++L
Sbjct: 87 LTTAKALHAHIVKLGIVQCCPLAN-TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL- 144
Query: 224 GYALGGFREEITGFTQYG-DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
T Q G+T F S + ++P+ S ++ ACA + G+
Sbjct: 145 -----------TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR 193
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H + + + V +SL+DMY +CG + N F+ ++
Sbjct: 194 QVHCHFI----------------VSEYANDEVVKSSLVDMYAKCGLL--NSAKAVFDSIR 235
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + MV A++G+ ++ L + +P +
Sbjct: 236 VKNTI-----SWTAMVSGYAKSGRKEEALELFRILPVK 268
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 168/655 (25%), Positives = 253/655 (38%), Gaps = 201/655 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA-----------FLG---- 60
PD VT+A C +L L LG ++HA +++ +L A + G
Sbjct: 278 VRPD--GVTFASALPACSRLEMLALGREMHA-VVLKDADLAANSFVASALVDMYAGNEKV 334
Query: 61 -----MFEKMPE--RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+F+ +PE R + W +M+ Y G EE + LF + E
Sbjct: 335 ASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEA------------- 381
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G A + + + C R E F+ GKE
Sbjct: 382 --------------GCAPSETTMSGVLPACARSE---------GFA-------GKEAMHG 411
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
++ K + + V N+LMD YA+ + VA F+ I + +VSWN ++ G + G E
Sbjct: 412 YVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAE 471
Query: 234 ITGFTQYGDGETALEFFSRMIQTD------MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
F + + S T+ PN I+L +L CA + GKEIHGY
Sbjct: 472 --AFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGY 529
Query: 288 VLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYG-------- 324
+RH ++ VG AL+ + L V WN LI YG
Sbjct: 530 AVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEA 589
Query: 325 --------RCGAIQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMV 358
G NE G F M++++ ++P + + C+V
Sbjct: 590 VALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVV 649
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAE---------PC----NPDIAEHAARHLFELEPL 405
D+L RAG+ D+ + + M EP + C N ++ E AA LFELEP
Sbjct: 650 DVLGRAGRLDEAYSIITSM--EPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPG 707
Query: 406 SS-------------------------------------------GKVHSFIAGDTSHSL 422
+ G +H F+AG++SH
Sbjct: 708 EASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPA 767
Query: 423 VHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGS 468
++ + L+ +++ GY HSEKLA+AFGL+ PG+
Sbjct: 768 SAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGA 827
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RV KNLR+C DCH K++SK R+I++ D RFHHF DG+CSCGDYW
Sbjct: 828 AIRVAKNLRVCNDCHEAAKFMSKMVG----RDIVLRDVRRFHHFRDGSCSCGDYW 878
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 47/281 (16%)
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV--YDYMISIK 125
R F + +++ MY LG ++ +LF + G DV ++ MIS+
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFR----------TTAAAFSPGGGDVVTWNTMISLL 257
Query: 126 FEGNACVK--RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+G C + + DM R + + S L +L G+E+H LK DL ++
Sbjct: 258 VQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAAN 317
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYG 241
V ++L+D YA + A F + + + L WNAM+ GYA G EE
Sbjct: 318 SFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE-------- 369
Query: 242 DGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
ALE FSRM + P+ ++SGVL ACA+ +GF + +HGYV++
Sbjct: 370 ----ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVK---------- 415
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+G+ FV N+L+DMY R G + + R F M+
Sbjct: 416 ------RGMAGNRFVQNALMDMYARLG--EMDVARRIFAMI 448
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 105/259 (40%), Gaps = 56/259 (21%)
Query: 148 MASGEFEEKDFSNLSLL------------KHGKEIHPHHLKKDDLES--DLLVNNSLMDF 193
+A G + F+ +S+L + G+E H LK+ L+ + N+L+
Sbjct: 160 LAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSM 219
Query: 194 YAKCRYLKVAHCKFSKIKQK------HLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
YA+ + A F +V+WN M I+ Q G A+
Sbjct: 220 YARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTM------------ISLLVQGGRCAEAV 267
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E M+ ++P+ ++ + L AC++++ LG+E+H VL+
Sbjct: 268 EVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKD---------------A 312
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAG 365
L SFV ++L+DMY G + R F+M+ EP+ + + M+ A+AG
Sbjct: 313 DLAANSFVASALVDMYA--GNEKVASARRVFDMVP-----EPSRQLGMWNAMICGYAQAG 365
Query: 366 QFDDTLNFMKKMPFEPSSA 384
++ L +M E A
Sbjct: 366 MDEEALELFSRMEAEAGCA 384
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 144/477 (30%), Positives = 203/477 (42%), Gaps = 136/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L +IH H L++ +D+L+ +L+D YAKC L A F +I + + +WNA++A
Sbjct: 116 LSETSQIHSHLLRRG-CHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIA 174
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
G A G E AL F+RM + N IS+ G LAAC+Q+ + G+
Sbjct: 175 GLAQGSKSSE------------ALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEG 222
Query: 284 IHGYVLRHHIQLSTGV----------------GIALISIQGLGTGSFVWNSLI---DMYG 324
+H V + + ++ V G + S G WN++I M+G
Sbjct: 223 VHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHG 282
Query: 325 R-CGAIQ-----------------------------KNEGWRYF-EMMKKEYNMEPAMEQ 353
C A++ EG R F EM+ + N ++
Sbjct: 283 DGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRN--VKH 340
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFEL- 402
Y +VDLL RAG+ + + MP P S C N ++AE A+R L E+
Sbjct: 341 YGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMG 400
Query: 403 ---------------------------EPLSS---------------GKVHSFIAGDTSH 420
E + S G +H F+ GD SH
Sbjct: 401 SNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSH 460
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+I KL + IK GY+ K C HSEKLA+AFGLISTS
Sbjct: 461 PDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSE 520
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+P+RV KNLR+CGDCH K +SK ++EII+ D RFH F DG+CSC DYW
Sbjct: 521 GTPIRVNKNLRICGDCHVVIKLISKI----YDQEIIVRDRARFHRFKDGSCSCRDYW 573
>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
Length = 863
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 154/598 (25%), Positives = 242/598 (40%), Gaps = 199/598 (33%)
Query: 53 VELCAFLGM-------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---- 101
+++ A LGM F +M R+ +WT+M+ Y G+ ++ + ++ L+ V
Sbjct: 332 IQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDD 391
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE- 154
AC+ L VG +++ S F V +L+M+ K R++ A F+
Sbjct: 392 ITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKC 451
Query: 155 --EKDFSNLS--------------------------------------------LLKHGK 168
EKD + S L+ GK
Sbjct: 452 MHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGK 511
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH H L+ +E + + N+L+D Y KC A +F K +VSWN M+AG
Sbjct: 512 EIHAHVLRCG-IEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG---- 566
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
F +G G+TAL FF++M++ P+ ++ +L AC+
Sbjct: 567 --------FVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACS--------------- 603
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
R G + +EGW F M ++Y++
Sbjct: 604 ------------------------------------RGGMV--SEGWELFHSMTEKYSIV 625
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P ++ Y CMVDLL+RAGQ + NF+ +MP P +A C + ++ E AA++
Sbjct: 626 PNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKY 685
Query: 399 LFELEPLSSGK-------------------------------------------VHSFIA 415
+ LEP +G VH+F+
Sbjct: 686 VLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLT 745
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGY------------MKRIPACGHSEKLALAFGLIS 463
D SH + +I+ L +Y +K GY +K CGHSE+LA+AFGLI+
Sbjct: 746 DDESHPQIREINTVLEGIYERMKASGYAPVESHCPEDEVLKDDIFCGHSERLAVAFGLIN 805
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
T+PG+ + V KN C CH K +S + R+II+ D+ + HHF DG+CSCGD
Sbjct: 806 TTPGTSISVTKNQYTCQSCHRILKMISNIVR----RDIIVRDSKQLHHFKDGSCSCGD 859
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 130/332 (39%), Gaps = 92/332 (27%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAH------------------LIVCGVELCAFL 59
PDE Y +F+ C +E G++ AH ++V E
Sbjct: 86 PDE--DAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAW 143
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F KMPER+VFSW M+G Y G +E ++L++ ++ GV DVY
Sbjct: 144 RVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAGVRP------------DVYT 191
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ CV R CG + + G+E+H H L+
Sbjct: 192 F---------PCVLR-------SCG---------------GVPDWRMGREVHAHVLRFG- 219
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ V N+LM YAKC + A F + +SWNAM+AG+ +
Sbjct: 220 FGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGH------------FE 267
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G+ LE F M+ ++QPN ++++ V A + KE+HG ++
Sbjct: 268 NGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVK--------- 318
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
+G NSLI MY G +++
Sbjct: 319 -------RGFAGDVAFCNSLIQMYASLGMMRQ 343
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 150/579 (25%), Positives = 218/579 (37%), Gaps = 176/579 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE+MP RNV +W ++M + G E ++ L + G
Sbjct: 171 LFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMP----------------N 214
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++S+ NAC G M L G++ H +
Sbjct: 215 VVSVCAFFNACA-----------GAM----------------FLSLGEQFH-GFVVTCGF 246
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V+N+++DFY KCR A F ++ ++ VSW +M+ YA Q+
Sbjct: 247 DMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYA------------QH 294
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G E AL + T +P +S VL CA + G G+ +H +R I + V
Sbjct: 295 GAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVA 354
Query: 301 IALISIQGLGTGS---------------FVWNSLIDMYGRCGAIQK-------------- 331
AL+ + G G WN++I Y G Q
Sbjct: 355 SALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGT 414
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+G+ F+ M++ + +EP E Y C+VDLL RAG +
Sbjct: 415 SPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAY 474
Query: 372 NFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSGK------------ 409
+++MP PS + C ++ A+ LFEL+P SG
Sbjct: 475 EIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAG 534
Query: 410 -------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
VH F A DT H +I L +L +++
Sbjct: 535 RWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQ 594
Query: 439 KIGYMKRIP--------------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
GYM HSEKLALAFGLI P P+R+ KNLR+C DCH
Sbjct: 595 ASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHR 654
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K+VS REII+ DN RFH+F CSC DYW
Sbjct: 655 AFKFVSGIVG----REIIVRDNNRFHYFKQFECSCKDYW 689
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 35/205 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G +IH L+ L D V+ + MD Y K L +A F ++ +++++WNA++
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+ G + F Y F R + PN +S+ ACA LG++ HG
Sbjct: 192 IDG--RPLETFKAY--------FGLR--EAGGMPNVVSVCAFFNACAGAMFLSLGEQFHG 239
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
+V+ + V N+++D YG+C K F+ M+ +
Sbjct: 240 FVVTCGFDMDVSVS----------------NAMVDFYGKCRCAGKARA--VFDGMRVRNS 281
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTL 371
+ +C M+ A+ G +D L
Sbjct: 282 V-----SWCSMIVAYAQHGAEEDAL 301
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 133/481 (27%), Positives = 208/481 (43%), Gaps = 126/481 (26%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK G+E+H LK L S+ + L++ Y KC + A F ++ ++ +V+ M+
Sbjct: 146 LKEGREVHSQVLKLG-LSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMIN 204
Query: 224 GYALGGFREE------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
Y G ++ I G + G+ ALE F M + D+ PN +++ VL+AC+++
Sbjct: 205 YYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGA 264
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI-- 320
+LG+ + Y+ +H I+L+ VG ALI++ Q +NS+I
Sbjct: 265 LQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMG 324
Query: 321 -DMYGRC--------GAIQK----------------------NEGWRYFEMMKKEYNMEP 349
++G+ G I++ G+ F M K+Y +EP
Sbjct: 325 FALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEP 384
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHL 399
+E Y CMVDLL R G+ ++ +F++ M P C N ++AE A+ L
Sbjct: 385 QIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSL 444
Query: 400 FELEPLSSG-------------------------------------------KVHSFIAG 416
+ SG ++H F+ G
Sbjct: 445 VACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLG 504
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
D H KI +KL L ++ GY K HSE+LA+ +GLI
Sbjct: 505 DLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLI 564
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
ST P + LRV+KNLR+C DCH K +S + R+I++ D RFHHF +G CSCGDY
Sbjct: 565 STKPLTTLRVVKNLRVCNDCHLTIKLISNITR----RKIVVRDRNRFHHFENGVCSCGDY 620
Query: 523 W 523
W
Sbjct: 621 W 621
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 141/337 (41%), Gaps = 84/337 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F NV+ +T+++ + YY + ++L+Y +I+ V KAC
Sbjct: 86 IFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLA 145
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+ G++V+ ++ + N ++ +++++ KCG E A F+E
Sbjct: 146 LKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMP------------- 192
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
E D++ + ++++Y F K V W AM
Sbjct: 193 ----------ERDVVASTVMINYY------------FDH-GIKDTVCWTAM--------- 220
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
I G + G+ ALE F M + D+ PN +++ VL+AC+++ +LG+ + Y+ +
Sbjct: 221 ---IDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDK 277
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
H I+L+ FV +LI+MY RCG I +E R FE MK E
Sbjct: 278 HRIELN----------------HFVGGALINMYSRCGDI--DEAQRVFEQMK-----EKN 314
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMK---KMPFEPSSA 384
+ Y M+ A G+ + + + K F PSS
Sbjct: 315 VITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSV 351
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 45/231 (19%)
Query: 165 KHGKEIHPHHLK--KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
KH +I P + K ++ D V L+ + + A FS + ++ + A++
Sbjct: 43 KHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALI 102
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
G L + Y DG + + +MI + + P++ +++ VL AC K G+
Sbjct: 103 DGLVLSCY---------YTDG---IHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGR 150
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
E+H VL+ GL + + LI++YG+CGA + + R F+ M
Sbjct: 151 EVHSQVLK----------------LGLSSNRSIRIKLIELYGKCGAFE--DARRVFDEMP 192
Query: 343 KE----------YNMEPAMEQYCC---MVDLLARAGQFDDTLNFMKKMPFE 380
+ Y + ++ C M+D L R G+ + L + M E
Sbjct: 193 ERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE 243
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 39/165 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E VT + C +L L+LG V +++ +EL F+G
Sbjct: 247 PNE--VTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQ 304
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+FE+M E+NV ++ SM+ + + G E V LF LI + GV ACS
Sbjct: 305 RVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGG 364
Query: 110 DHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+G +++ DY I + E C ++D+ + GR+E A
Sbjct: 365 LAELGFEIFHSMAKDYGIEPQIEHYGC----MVDLLGRLGRLEEA 405
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 245/631 (38%), Gaps = 231/631 (36%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------------- 52
+L S + PD TV + + Q C L E G+QVH I G
Sbjct: 97 ILSSGNDLKPDNYTVNF--LVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYA 154
Query: 53 --------------------------VELCAFLG-------MFEKMPERNVFSWTSMMGM 79
V CA G +FE MPER+ +W +M+
Sbjct: 155 ELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISG 214
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139
Y +G E +N+F+L+ EGV K + V MIS+ +AC
Sbjct: 215 YAQVGESREALNVFHLMQLEGV-------KVNGVA------MISVL---SAC-------- 250
Query: 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
+ L L G+ H + ++++ ++ + + +L+D YAKC
Sbjct: 251 -------------------TQLGALDQGRWAHSY-IERNKIKITVRLATTLVDLYAKCGD 290
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
++ A F +++K++ +W++ L G A+ GF GE LE FS M Q +
Sbjct: 291 MEKAMEVFWGMEEKNVYTWSSALNGLAMNGF------------GEKCLELFSLMKQDGVT 338
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
PN ++ VL C+ V G+V
Sbjct: 339 PNAVTFVSVLRGCSVV----------GFV------------------------------- 357
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
+EG R+F+ M+ E+ +EP +E Y C+VDL ARAG+ +D ++ +++MP
Sbjct: 358 ------------DEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPM 405
Query: 380 EPSSAEPC----------NPDIAEHAARHLFELEPLS----------------------- 406
+P +A N ++ A++ + ELE +
Sbjct: 406 KPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHV 465
Query: 407 --------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+G+VH F GD SH +I + ++ GY
Sbjct: 466 RQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADT 525
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K C HSEK A+AFG++S P+R++KNLR+CGDCH + +SK
Sbjct: 526 TPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKI 585
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSC +W
Sbjct: 586 ----FNREIIVRDRNRFHHFKDGHCSCNGFW 612
>gi|224127907|ref|XP_002320193.1| predicted protein [Populus trichocarpa]
gi|222860966|gb|EEE98508.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 136/482 (28%), Positives = 208/482 (43%), Gaps = 146/482 (30%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK----HLVSWNAMLAGYALGGFREE----- 233
+++ NSL+ Y+ + A +++K++ L++WN+++AGY++ G +E
Sbjct: 22 NIVAWNSLISGYSFKGHFDHAKRLLNRMKEEGIKPDLITWNSLVAGYSMRGHTKEALALI 81
Query: 234 ------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
I+G +Q G+ ++E F +M + ++PN+ ++S +L C +
Sbjct: 82 HDIKISGLTPNVVSWTALISGCSQNGNYSESIEAFVQMQEEGIKPNSATISSLLRTCGGL 141
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV----------WN---- 317
+ GKEIH +R V ALI L + V WN
Sbjct: 142 SLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKSGDLESAHKVFWSAEKTLASWNCMIM 201
Query: 318 ------------SLIDMYGRCGAIQ------------KN-----EGWRYFEMMKKEYNME 348
+L+D R G + KN EGW+ F+MM +Y ++
Sbjct: 202 GFAINGCGREVIALLDGMQRAGILPDAITFTALLSGCKNSGLVEEGWKCFDMMSNDYGIK 261
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P +E Y CM DLL RAG D+ +F++ MP +P ++ C N + AE AA+
Sbjct: 262 PTIEHYSCMADLLGRAGYLDEAWDFIQTMPIKPDASVWGAMLGSCRIHGNIEFAEIAAKE 321
Query: 399 LFELEPLSSG-------------------------------------------KVHSFIA 415
LF+LEP +S +VH F A
Sbjct: 322 LFKLEPYNSANYVLMLSLYAMSNRWEDVDRIKDLMDTRGIKPRQVWSWIQIDQRVHLFSA 381
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGL 461
G H +I +L +L SE+KK GY+ + H+EKLA+ +GL
Sbjct: 382 GGIPHQDEGEIYYELYQLVSELKKFGYLPDVNCVYQNIDEEEKVKMLLSHTEKLAITYGL 441
Query: 462 ISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
I TS +P+RVIKN R+C DCH+ K +S R REI + D RFHHF G CSC D
Sbjct: 442 IKTS-SAPIRVIKNTRICSDCHTAAKLISLV----RSREIFLRDGVRFHHFKAGKCSCND 496
Query: 522 YW 523
YW
Sbjct: 497 YW 498
>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
Length = 1539
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 156/619 (25%), Positives = 247/619 (39%), Gaps = 204/619 (32%)
Query: 38 LELGIQVHAHLIVCGVELCAF---LGMFEKMPERNVFSWTSMMG-MYNVLGYYEEIVNLF 93
L+ + V L+ E F L +F MPE + SW S++G + + + V F
Sbjct: 992 LDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYF 1051
Query: 94 YLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
++ G + A S L H V ++ ++ + + +L + KC
Sbjct: 1052 LEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC 1111
Query: 144 GRME--------------------MASGEFEEKDF------------------------- 158
G M M SG +
Sbjct: 1112 GEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATV 1171
Query: 159 ----SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
++++ L+ G E+H ++ +ESD++V ++L+D Y+KC + A F + ++
Sbjct: 1172 LSACASVATLERGMEVHACGIRAC-MESDVVVGSALVDMYSKCGRIDYASRFFELMPLRN 1230
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS-LSGVLAACA 273
+ SWN+M++GYA ++G GE AL+ F+RM+ P+ ++ L GVL+AC+
Sbjct: 1231 VYSWNSMISGYA------------RHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACS 1278
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
V G+V E
Sbjct: 1279 HV----------GFV-------------------------------------------EE 1285
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS----------- 382
G+ +F+ M + Y + P +E + CMVDLL RAG+ D+ +F+ MP +P+
Sbjct: 1286 GFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGAC 1345
Query: 383 -SAEPCNPDIAEHAARHLFELEP------------LSSGK-------------------- 409
A N ++ AA L ELEP +SG+
Sbjct: 1346 CRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKE 1405
Query: 410 -----------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP----------- 447
VH F+AGD H I +KL L +++ GY+ +
Sbjct: 1406 AGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENK 1465
Query: 448 ---ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
HSEK+A+AF L S P+R++KNLR+CGDCHS Y+SK R+I++
Sbjct: 1466 EELLSYHSEKIAVAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIVG----RQIVLR 1520
Query: 505 DNYRFHHFVDGACSCGDYW 523
D+ RFHHF DG CSCGDYW
Sbjct: 1521 DSNRFHHFEDGKCSCGDYW 1539
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 153/411 (37%), Gaps = 115/411 (27%)
Query: 39 ELGIQVH---------AHLIVCGVELCAF----------LGMFEKMPERNVFSWTSMMGM 79
+LG+Q+H + ++VC V + + +F+++ RN SW S++ +
Sbjct: 664 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISV 723
Query: 80 YNVLGYYEEIVNLFYLLIDEG---------------VYKACSE----------------- 107
Y+ G +LF + EG + ACS
Sbjct: 724 YSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEK 783
Query: 108 ---LKDHRVGKDVYDYMISIKFEGNA------CVKRPVLDM------FIKCGRMEMASGE 152
L+D VG + +A R V+ M +K + E A+
Sbjct: 784 SGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKV 843
Query: 153 FEE-KD---------------FSNLSLL----KHGKEIHPHHLKKDDLESDLLVNNSLMD 192
F E KD FS S+L + G+E+H H ++ ++ + + N L++
Sbjct: 844 FHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVN 903
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
YAK + A F + +K VSWN++ I+G Q E A E F R
Sbjct: 904 MYAKSGAIADACSVFELMVEKDSVSWNSL------------ISGLDQNECSEDAAESFLR 951
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M +T P+ +L L++CA + LG++IH L+ + V AL+++ TG
Sbjct: 952 MRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYA-ETG 1010
Query: 313 SFV----------------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
F WNS+I A + EMM+ + +
Sbjct: 1011 CFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGL 1061
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+ +E+H +K +L ++N+L++ Y + L A F ++ ++LV+W +++G
Sbjct: 561 EEARELHLQSIKYG-FVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 619
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--KGFKLGK 282
Y TQ G + A F M++ PN + L AC + G KLG
Sbjct: 620 Y------------TQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGV 667
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG---------------LGT-GSFVWNSLIDMYGRC 326
+IHG + + V LIS+ G +G S WNS+I +Y R
Sbjct: 668 QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRR 727
Query: 327 GAIQKNEGWRYFEMMKKE 344
G + F M+KE
Sbjct: 728 G--DXVSAYDLFSSMQKE 743
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC---------AFLGM----------- 61
+ T+A + C + LE G++VHA CG+ C A + M
Sbjct: 1165 SFTFATVLSACASVATLERGMEVHA----CGIRACMESDVVVGSALVDMYSKCGRIDYAS 1220
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
FE MP RNV+SW SM+ Y G+ E+ + LF ++ +G
Sbjct: 1221 RFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDG 1261
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 171/696 (24%), Positives = 265/696 (38%), Gaps = 213/696 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQV---------HAHLIVCGVEL-----CAFLG----MFEKM 65
T+ + + C L +L G + H L V + CA G +F KM
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161
Query: 66 PERNVFSWTSMMGMYNVLGYY--------------------EEIVNLFYLLIDEGVY--- 102
P R+V +W +M+ Y G Y +V+L LL G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221
Query: 103 --------KACSELKDHRV--GKDVYDYMISIK--------FEG----NACVKRPVLDMF 140
+AC E + +V G + D K F G N ++ F
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281
Query: 141 IKCGRMEMASGEFEE------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ C RM A F++ + ++L+ L G ++H + K + +
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHAL-IAKSGIHA 340
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL +NSL+ YAK + A F +I K +S+ A+L +G Q G
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALL------------SGCVQNGK 388
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A F +M +M+P+ ++ ++ AC+ + + GK HG V+ + L T + +
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNS 448
Query: 303 LISIQG------LGTGSF---------VWNSLIDMYGRCGAIQK---------------- 331
LI + L F WN++I YG G ++
Sbjct: 449 LIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPD 508
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG +F+ M +Y + P ME Y CMVDLLAR G D+ F+
Sbjct: 509 DVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFI 568
Query: 375 KKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK--------------- 409
+ MP + + C N D+ + +R + +L P +G
Sbjct: 569 QSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFD 628
Query: 410 ----------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+H+F+ GD SH I +L + +IKK+G
Sbjct: 629 EAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLG 688
Query: 442 YMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y HSEKLA+AFG++S + + V KNLR+CGDCH+ K
Sbjct: 689 YQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIK 748
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y++ R R II+ D RFHHF +G CSCG++W
Sbjct: 749 YMTLV----RNRTIIVRDTNRFHHFKNGQCSCGNFW 780
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 91/455 (20%), Positives = 173/455 (38%), Gaps = 114/455 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKD 110
+F+++P + ++ +++ Y+ LG + ++L+ ++ V KACS L D
Sbjct: 56 VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVD 115
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------KD 157
R G+ ++ + + + V ++D++I+C R A F +
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175
Query: 158 FSNLSLLKH------------------------------------GKEIHPHHLKK--DD 179
++N + H G IH + L+ +
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E +L+ +L+D YAKC+ L A F + ++ V+W+A++ G+ L E
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE------ 289
Query: 240 YGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A F M+ + + S++ L CA + +G ++H
Sbjct: 290 ------AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH------------- 330
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
ALI+ G+ NSL+ MY + G I NE +F+ + + + Y ++
Sbjct: 331 ---ALIAKSGIHADLTASNSLLSMYAKAGLI--NEATMFFDEIAVKDTIS-----YGALL 380
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPCN--PDIAE-----HAARHLFELEPLSSGKVH 411
+ G+ ++ KKM + CN PDIA A HL L+
Sbjct: 381 SGCVQNGKAEEAFLVFKKM-------QACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
I G +L I L+ +Y++ KI +++
Sbjct: 434 VIIRG---LALETSICNSLIDMYAKCGKIDLSRQV 465
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------ 55
L+ + M N + T + C L L+ G H +I+ G+ L
Sbjct: 394 LVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMY 453
Query: 56 --CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
C + + F+KMP R+V SW +M+ Y + G +E LF + ++G
Sbjct: 454 AKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/558 (25%), Positives = 222/558 (39%), Gaps = 170/558 (30%)
Query: 48 LIVCGVELCAFLG---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
+ +C V L A++ +F+ M R++ SW +M+ Y V G +F D
Sbjct: 116 VFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRD 175
Query: 99 EGVYKACSELKDH---RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
+ S + + R K+ + ++ G A ++ + C
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSAC------------ 223
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
S + L G E+H ++ + +E D+ + +L+D YAKC ++ + F + K +
Sbjct: 224 ---SAMGALAIGAEVH-RFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDV 279
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
++W++M I G +G G AL FS MI +QPN I+ GVL AC
Sbjct: 280 LTWSSM------------IIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIAC--- 324
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
T VG+ N+G
Sbjct: 325 ---------------------THVGLV-----------------------------NDGK 334
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------- 387
+YF M + + P ME Y CMVDLL RAG ++ + ++ M F+P +P
Sbjct: 335 KYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKP---DPIIWRTLLGA 391
Query: 388 -----NPDIAEHAARHLFELEPLSSG---------------------------------- 408
N +IAE A L L+PL+ G
Sbjct: 392 CRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVP 451
Query: 409 ---------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KR 445
VH F++GD SH + +I + L + +++ GY K+
Sbjct: 452 GRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKK 511
Query: 446 IPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
HSEKLA+AFGL+ T S LR+ KNLR C DCHS K +S A +R++I+ D
Sbjct: 512 RALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLA----YDRKLIVRD 567
Query: 506 NYRFHHFVDGACSCGDYW 523
RFHHF +G CSC DYW
Sbjct: 568 RNRFHHFSEGQCSCKDYW 585
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 68/218 (31%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK-------------------- 206
G +H L+ +DL V +L++ YAK ++A +
Sbjct: 66 GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125
Query: 207 -------------FSKIKQKHLVSWNAMLAGYALGG----FREEITG------------F 237
F + + LVSWN M+ GYA+ G RE G
Sbjct: 126 YVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMI 185
Query: 238 TQYGDG---ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+ Y G + ALE + M + P+ IS+ VL+AC+ + +G E+H +V + ++
Sbjct: 186 SAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVE 245
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+ +G A L+DMY +CG I+ +
Sbjct: 246 VDMKLGTA----------------LVDMYAKCGDIENS 267
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 171/696 (24%), Positives = 265/696 (38%), Gaps = 213/696 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQV---------HAHLIVCGVEL-----CAFLG----MFEKM 65
T+ + + C L +L G + H L V + CA G +F KM
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161
Query: 66 PERNVFSWTSMMGMYNVLGYY--------------------EEIVNLFYLLIDEGVY--- 102
P R+V +W +M+ Y G Y +V+L LL G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221
Query: 103 --------KACSELKDHRV--GKDVYDYMISIK--------FEG----NACVKRPVLDMF 140
+AC E + +V G + D K F G N ++ F
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281
Query: 141 IKCGRMEMASGEFEE------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ C RM A F++ + ++L+ L G ++H + K + +
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHAL-IAKSGIHA 340
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL +NSL+ YAK + A F +I K +S+ A+L +G Q G
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALL------------SGCVQNGK 388
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A F +M +M+P+ ++ ++ AC+ + + GK HG V+ + L T + +
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNS 448
Query: 303 LISIQG------LGTGSF---------VWNSLIDMYGRCGAIQK---------------- 331
LI + L F WN++I YG G ++
Sbjct: 449 LIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPD 508
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EG +F+ M +Y + P ME Y CMVDLLAR G D+ F+
Sbjct: 509 DVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFI 568
Query: 375 KKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK--------------- 409
+ MP + + C N D+ + +R + +L P +G
Sbjct: 569 QSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFD 628
Query: 410 ----------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+H+F+ GD SH I +L + +IKK+G
Sbjct: 629 EAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLG 688
Query: 442 YMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y HSEKLA+AFG++S + + V KNLR+CGDCH+ K
Sbjct: 689 YQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIK 748
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
Y++ R R II+ D RFHHF +G CSCG++W
Sbjct: 749 YMTLV----RNRTIIVRDTNRFHHFKNGQCSCGNFW 780
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/396 (19%), Positives = 152/396 (38%), Gaps = 106/396 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELKD 110
+F+++P + ++ +++ Y+ LG + ++L+ ++ V KACS L D
Sbjct: 56 VFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKACSALVD 115
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------KD 157
R G+ ++ + + + V ++D++I+C R A F +
Sbjct: 116 LRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAG 175
Query: 158 FSNLSLLKH------------------------------------GKEIHPHHLKK--DD 179
++N + H G IH + L+ +
Sbjct: 176 YANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQ 235
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E +L+ +L+D YAKC+ L A F + ++ V+W+A++ G+ L E
Sbjct: 236 NEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTE------ 289
Query: 240 YGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A F M+ + + S++ L CA + +G ++H
Sbjct: 290 ------AFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH------------- 330
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
ALI+ G+ NSL+ MY + G I NE +F+ + + + Y ++
Sbjct: 331 ---ALIAKSGIHADLTASNSLLSMYAKAGLI--NEATMFFDEIAVKDTIS-----YGALL 380
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPCN--PDIA 392
+ G+ ++ KKM + CN PDIA
Sbjct: 381 SGCVQNGKAEEAFLVFKKM-------QACNMEPDIA 409
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------ 55
L+ + M N + T + C L L+ G H +I+ G+ L
Sbjct: 394 LVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMY 453
Query: 56 --CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100
C + + F+KMP R+V SW +M+ Y + G +E LF + ++G
Sbjct: 454 AKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQG 504
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 171/649 (26%), Positives = 256/649 (39%), Gaps = 194/649 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LL SM + VT+ C + E G +H ++V G+ +G
Sbjct: 349 LLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYG 408
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+ +MP R+V +W +++G GY E DE KA + +
Sbjct: 409 KIGEMSESRRVLLQMPRRDVVAWNALIG-----GYAE----------DEDPDKALAAFQT 453
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RV EG + V+ + C + G+ LL+ GK +
Sbjct: 454 MRV-------------EGVSSNYITVVSVLSAC----LLPGD----------LLERGKPL 486
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H + + ESD V NSL+ YAKC L + F+ + +++++WNAMLA A
Sbjct: 487 HAY-IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANA---- 541
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+G GE L+ S+M + + S S L+A A++ + G+++HG ++
Sbjct: 542 --------HHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 593
Query: 291 ---HHIQLSTGVGIALISIQGLGTGSFV-------------WNSLIDMYGRCGAIQK--- 331
H + S G G V WN LI GR G ++
Sbjct: 594 LGFEHDSFIFNAAADMYSKCG-EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCA 652
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
++G Y++M+ +++ +EPA+E C++DLL
Sbjct: 653 TFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLL 712
Query: 362 ARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEP------- 404
R+G+ + F+ KMP +P S C N D AA +L +LEP
Sbjct: 713 GRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYV 772
Query: 405 LSSG------------------------------------KVHSFIAGDTSHSLVHKISE 428
LSS KV SF GD +H +I
Sbjct: 773 LSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYA 832
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
KL + IK+ GY+ HSE+LALA+ L+ST GS +R+ K
Sbjct: 833 KLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFK 892
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCHS K+VS R R I++ D YRFHHF G CSC DYW
Sbjct: 893 NLRICSDCHSVYKFVS----RVIGRRIVLRDQYRFHHFERGLCSCKDYW 937
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 132/330 (40%), Gaps = 87/330 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+FE+MP+RNV SWTS+M Y+ G EE+++++ + EGV +C LKD
Sbjct: 116 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKD 175
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---------------- 154
+G+ + ++ E V+ ++ M G ++ A+ F+
Sbjct: 176 ESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 235
Query: 155 -------EKDFSNLSLL-------------------------KHGKEIHPHHLKKDDLES 182
E+ F SL+ K G+ IH +K +S
Sbjct: 236 YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDS 294
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V N+L+ YA A+ F ++ K L+SWN+++A F G
Sbjct: 295 VVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMAS------------FVNDGR 342
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL MI + N ++ + LAAC F+ G+ +HG
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHG---------------- 386
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
L+ + GL + N+L+ MYG+ G + ++
Sbjct: 387 LVVVSGLFYNQIIGNALVSMYGKIGEMSES 416
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 151/387 (39%), Gaps = 106/387 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEKM 65
+ +L+ C L + LG Q+ ++ G+E L + LG +F++M
Sbjct: 162 SMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQM 221
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI---DEGVYKACSEL------KDH-RVGK 115
ER+ SW S+ Y G+ EE +F L+ DE S L DH + G+
Sbjct: 222 SERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGR 281
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------------- 161
++ ++ + F+ CV +L M+ GR A+ F++ +L
Sbjct: 282 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDG 341
Query: 162 ----------SLLKHGKEIH-------------PHHLKKDDLESDLLV----------NN 188
S++ GK ++ P +K + L+V N
Sbjct: 342 RSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN 401
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y K + + ++ ++ +V+WNA++ GYA + D + AL
Sbjct: 402 ALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA------------EDEDPDKALA 449
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKG--FKLGKEIHGYVLRHHIQLSTGVGIALISI 306
F M + N I++ VL+AC + G + GK +H Y++
Sbjct: 450 AFQTMRVEGVSSNYITVVSVLSACL-LPGDLLERGKPLHAYIVS---------------- 492
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G + V NSLI MY +CG + ++
Sbjct: 493 AGFESDEHVKNSLITMYAKCGDLSSSQ 519
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 127/298 (42%), Gaps = 72/298 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP RN SW +MM +G Y E + F + D G+ + +
Sbjct: 14 LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPS--------------SF 59
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+I+ + CGR SG S+ + G ++H + K L
Sbjct: 60 VIA--------------SLVTACGR----SG----------SMFREGVQVHGF-VAKSGL 90
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
SD+ V+ +++ Y + + F ++ +++VSW +++ GY+ G EE+
Sbjct: 91 LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV------ 144
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
++ + M + N S+S V+++C +K LG++I G V++ ++ V
Sbjct: 145 ------IDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 198
Query: 301 IALISIQG-LGTGSFV--------------WNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+LIS+ G +G + WNS+ Y + G I+ E +R F +M++
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIE--ESFRIFSLMRR 254
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 13/117 (11%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y K +K A F + ++ VSWN M++G G E +EFF +M
Sbjct: 2 YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLE------------GMEFFRKM 49
Query: 254 IQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
++P++ ++ ++ AC + F+ G ++HG+V + + V A++ + G+
Sbjct: 50 CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 106
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 203/487 (41%), Gaps = 137/487 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS L+ GK +H H + D V +L+ FY+KC ++ A F ++ +K +
Sbjct: 115 KSCADLSALRIGKGVHCHAVV-SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSI 173
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN++ ++GF Q G + A++ F +M ++ +P++ + +L+ACAQ
Sbjct: 174 VAWNSL------------VSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQT 221
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LG-----------TGSFVWNSLI 320
LG +H Y++ + L+ +G ALI++ +G T W ++I
Sbjct: 222 GAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281
Query: 321 DMYGR-----------------CGAIQKN-----------------EGWRYFEMMKKEYN 346
YG CG I N EG ++ M K Y
Sbjct: 282 SAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYR 341
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAE 393
+ P +E + CMVD+L RAG D+ F+ ++ + P N D+
Sbjct: 342 LIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGV 401
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
A+ L LEP + G K
Sbjct: 402 EIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKT 461
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
+ F GD SH +I L L S K+IGY K HSEKLA
Sbjct: 462 YMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLA 521
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ T + + ++KNLR+C DCHS KY+S R+ I + D RFHHF +G+
Sbjct: 522 VAFGLLKTVDVA-ITIVKNLRICEDCHSAFKYISIVSNRQ----ITVRDKLRFHHFQNGS 576
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 577 CSCLDYW 583
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+N T+ + + C L+ L +G VH H +V G L ++
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEG 160
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F++MPE+++ +W S++ + G +E + +FY + + G + AC++
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQ 220
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+G V+ Y+IS + N + +++++ +CG + A F++ +N++
Sbjct: 221 TGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVA 275
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 31/133 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD + T+ + C + + LG VH ++I G++L LG
Sbjct: 206 PD--SATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSEL 108
+F+KM E NV +WT+M+ Y GY ++ V LF + D+ V AC+
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323
Query: 109 KDHRVGKDVYDYM 121
G+ VY M
Sbjct: 324 GLVEEGRSVYKRM 336
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ ++ RM+ +++ P+ + + V+ +CA + ++GK +H + + +
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV----------------V 135
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWR-YFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G G ++V +L+ Y +CG + EG R F+ M E ++ + +V + G
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDM---EGARQVFDRMP-----EKSIVAWNSLVSGFEQNG 187
Query: 366 QFDDTLNF---MKKMPFEPSSA 384
D+ + M++ FEP SA
Sbjct: 188 LADEAIQVFYQMRESGFEPDSA 209
>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 1011
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 173/663 (26%), Positives = 272/663 (41%), Gaps = 196/663 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P++ T++ L + C NNL+LG VHA ++ G+++ LG
Sbjct: 388 PNQYTLSSVL--KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAE 445
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+FE M E +V SW M+G Y G E+ +++F L KD + D
Sbjct: 446 RLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRL----------PYKDVVSWNTIVD 495
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHGKEIHP 172
++ +E +A + L ++CG EF FS +LS ++ G+++H
Sbjct: 496 GLLQCGYERHALEQ---LYCMVECGT------EFSAVTFSIALILASSLSHVELGRQLHG 546
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKC---------------RYLKVAHCKFS-KIKQKHLV 216
LK +SD + +SL++ Y KC L+ + + S K + +V
Sbjct: 547 MVLKFG-FDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIV 605
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SW +M++GY G +Y DG L+ F M++ + + +++ +++ACA
Sbjct: 606 SWGSMVSGYVWNG---------KYEDG---LKTFRLMVRELVVVDIRTVTTIISACANAG 653
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLI 320
+ G+ +H YV + ++ VG +LI + +GS +W S+I
Sbjct: 654 ILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYS-KSGSLDDAWMVFRQSNEPNIVMWTSMI 712
Query: 321 DMYGRCG---------------AIQKNE------------------GWRYFEMMKKEYNM 347
Y G I NE G RYF MMK Y +
Sbjct: 713 SGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCI 772
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKK----------MPFEPSSAEPCNPDIAEHAAR 397
P +E MVDL RAG T NF+ K F S N ++ + +
Sbjct: 773 NPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSE 832
Query: 398 HLFELEPLSSG-------------------------------------------KVHSFI 414
L ++ P G ++H+F+
Sbjct: 833 MLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFV 892
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFG 460
GD SH +I L L +K+IGY + HSEKLA+ FG
Sbjct: 893 MGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFG 952
Query: 461 LISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
+I+T+ +P+R+IKNLR+C DCH+ KY S+ +REII+ D +RFHHF G+CSCG
Sbjct: 953 IINTANRTPIRIIKNLRICTDCHNFIKYASQL----LDREIIVRDIHRFHHFKHGSCSCG 1008
Query: 521 DYW 523
DYW
Sbjct: 1009 DYW 1011
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 121/281 (43%), Gaps = 61/281 (21%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+++P+RN +WT ++ + G E + NLF + +G V K CS +
Sbjct: 346 LFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNN 405
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
++GK V+ +M+ + + + +LD+++KC E A FE +
Sbjct: 406 LQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMN------------- 452
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
E D++ N ++ Y + ++ + F ++ K +VSWN +
Sbjct: 453 ----------EGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTI--------- 493
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+ G Q G ALE M++ + + ++ S L + + +LG+++HG VL+
Sbjct: 494 ---VDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLK 550
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
G + F+ +SL++MY +CG + K
Sbjct: 551 F----------------GFDSDGFIRSSLVEMYCKCGRMDK 575
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 36/211 (17%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H ++K L++ L N L+ YAK + A F +I Q++ +W +
Sbjct: 311 LHALYVKNGSLQT-LNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTIL-------- 361
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
I+GF + G E F M PN +LS VL C+ +LGK +H ++L
Sbjct: 362 ----ISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWML 417
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349
R+ I + +G NS++D+Y +C + E R FE+M E
Sbjct: 418 RNGIDVDVVLG----------------NSILDLYLKCKVFEYAE--RLFELMN-----EG 454
Query: 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + M+ RAG + +L+ +++P++
Sbjct: 455 DVVSWNIMIGAYLRAGDVEKSLDMFRRLPYK 485
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 141/555 (25%), Positives = 225/555 (40%), Gaps = 164/555 (29%)
Query: 48 LIVCGVELCAFLG---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
+ +C V L A++ +F+ M ER++ SW +M+ Y V G + +F + D
Sbjct: 106 VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDD 165
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVK---RPVLDMFIKCGRMEMASGEFEE 155
+ S + + G+ D + + ACV ++ + C
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSAC------------ 213
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
S++ L G E+H ++ + +E D+ + +L+D YAKC ++ + F + K +
Sbjct: 214 ---SDMGALAVGAEVH-QFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDV 269
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
++W++M+ G A GF G AL FSRM+ +QPN ++ GVL +C
Sbjct: 270 LTWSSMIIGLANHGF------------GHDALSLFSRMLSEGLQPNEVTFIGVLISCTH- 316
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ L+S +G
Sbjct: 317 -------------------------LGLVS---------------------------DGK 324
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC-- 387
+YF M + + P ++ Y CMVDLL R+G ++ ++ MPFEP + C
Sbjct: 325 KYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRI 384
Query: 388 --NPDIAEHAARHLFELEPLSSG------------------------------------- 408
N ++AE A L L+P + G
Sbjct: 385 YKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRS 444
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPA 448
+H FI+GD SH +I + L + +++ GY K
Sbjct: 445 SIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERAL 504
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HSEKLA+AFGL++T GS LR+ KNLR C DCHS K ++ ER++I+ D R
Sbjct: 505 AEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLY----ERKLIIRDRNR 560
Query: 509 FHHFVDGACSCGDYW 523
FHHF +G CSC DYW
Sbjct: 561 FHHFSEGRCSCKDYW 575
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 107/268 (39%), Gaps = 65/268 (24%)
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191
V+ +++ + K GR ++A F+E D+ + N ++
Sbjct: 77 VRTALVEAYAKAGRADLARAAFDEAP-----------------------RRDVFLCNVML 113
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG----FREEITG----------- 236
Y + A F ++++ +VSWN M+ GYA+ G RE G
Sbjct: 114 AAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSS 173
Query: 237 ----FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
+T+ + ALE + M + P+ ++ VL+AC+ + +G E+H +V +
Sbjct: 174 MMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNG 233
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
++L +G A LIDMY +CG I+ + R F M + +
Sbjct: 234 VELDVKLGTA----------------LIDMYAKCGDIENSV--RVFHSMPVKDVL----- 270
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ M+ LA G D L+ +M E
Sbjct: 271 TWSSMIIGLANHGFGHDALSLFSRMLSE 298
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
NPD CT T + C + L +G +VH + GVEL LG
Sbjct: 199 VNPD-CT-TMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIEN 256
Query: 61 ---MFEKMPERNVFSWTSM-MGMYNVLGYYEEIVNLFYLLIDEGV 101
+F MP ++V +W+SM +G+ N G+ + ++LF ++ EG+
Sbjct: 257 SVRVFHSMPVKDVLTWSSMIIGLAN-HGFGHDALSLFSRMLSEGL 300
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 171/649 (26%), Positives = 256/649 (39%), Gaps = 194/649 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
LL SM + VT+ C + E G +H ++V G+ +G
Sbjct: 439 LLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYG 498
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+ +MP R+V +W +++G GY E DE KA + +
Sbjct: 499 KIGEMSESRRVLLQMPRRDVVAWNALIG-----GYAE----------DEDPDKALAAFQT 543
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
RV EG + V+ + C + G+ LL+ GK +
Sbjct: 544 MRV-------------EGVSSNYITVVSVLSAC----LLPGD----------LLERGKPL 576
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H + + ESD V NSL+ YAKC L + F+ + +++++WNAMLA A
Sbjct: 577 HAY-IVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANA---- 631
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+G GE L+ S+M + + S S L+A A++ + G+++HG ++
Sbjct: 632 --------HHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 683
Query: 291 ---HHIQLSTGVGIALISIQGLGTGSFV-------------WNSLIDMYGRCGAIQK--- 331
H + S G G V WN LI GR G ++
Sbjct: 684 LGFEHDSFIFNAAADMYSKCG-EIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCA 742
Query: 332 ------------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
++G Y++M+ +++ +EPA+E C++DLL
Sbjct: 743 TFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLL 802
Query: 362 ARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEP------- 404
R+G+ + F+ KMP +P S C N D AA +L +LEP
Sbjct: 803 GRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYV 862
Query: 405 LSSG------------------------------------KVHSFIAGDTSHSLVHKISE 428
LSS KV SF GD +H +I
Sbjct: 863 LSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYA 922
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
KL + IK+ GY+ HSE+LALA+ L+ST GS +R+ K
Sbjct: 923 KLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFK 982
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCHS K+VS R R I++ D YRFHHF G CSC DYW
Sbjct: 983 NLRICSDCHSVYKFVS----RVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/321 (22%), Positives = 125/321 (38%), Gaps = 92/321 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+FE+MP+RNV SWTS+M Y+ G EE+++++ KD +G+ +
Sbjct: 231 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---------------KDESLGRQIIGQ 275
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE-----------------------EKD 157
++ E V+ ++ M G ++ A+ F+ E+
Sbjct: 276 VVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEES 335
Query: 158 FSNLSLL-------------------------KHGKEIHPHHLKKDDLESDLLVNNSLMD 192
F SL+ K G+ IH +K +S + V N+L+
Sbjct: 336 FRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMG-FDSVVCVCNTLLR 394
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
YA A+ F ++ K L+SWN+++A F G AL
Sbjct: 395 MYAGAGRSVEANLVFKQMPTKDLISWNSLMAS------------FVNDGRSLDALGLLCS 442
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
MI + N ++ + LAAC F+ G+ +HG L+ + GL
Sbjct: 443 MISSGKSVNYVTFTSALAACFTPDFFEKGRILHG----------------LVVVSGLFYN 486
Query: 313 SFVWNSLIDMYGRCGAIQKNE 333
+ N+L+ MYG+ G + ++
Sbjct: 487 QIIGNALVSMYGKIGEMSESR 507
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/263 (23%), Positives = 104/263 (39%), Gaps = 45/263 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ MP RN SW +MM +G Y E + F + D G+ AC
Sbjct: 129 LFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGS 188
Query: 111 -HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS-----LL 164
R G V+ ++ + V +L ++ G + + FEE N+ ++
Sbjct: 189 MFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMV 248
Query: 165 KHGKEIHPH-----------------HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
+ + P + K LES L V NSL+ + A+ F
Sbjct: 249 GYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIF 308
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ ++ +SWN++ A YA G EE + FS M + + N+ ++S
Sbjct: 309 DQMSERDTISWNSIAAAYAQNGHIEE------------SFRIFSLMRRFHDEVNSTTVST 356
Query: 268 VLAACAQVKGFKLGKEIHGYVLR 290
+L+ V K G+ IHG V++
Sbjct: 357 LLSVLGHVDHQKWGRGIHGLVVK 379
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F++ FS +++ G+ +H +K + +L N+L++ Y K +K A F +
Sbjct: 77 FDQIGFSQITIETTGRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPV 135
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++ VSWN M++G G E +EFF +M ++P++ ++ ++ AC
Sbjct: 136 RNEVSWNTMMSGIVRVGLYLE------------GMEFFRKMCDLGIKPSSFVIASLVTAC 183
Query: 273 AQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
+ F+ G ++HG+V + + V A++ + G+
Sbjct: 184 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 221
>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g40410, mitochondrial; Flags: Precursor
gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 608
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 164/601 (27%), Positives = 246/601 (40%), Gaps = 177/601 (29%)
Query: 40 LGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVN-LFYLLID 98
+G Q+ + G ++CA +F++MPER++ SW S++ Y+ GY + L ++I
Sbjct: 68 IGDQLVGCYLRLGHDVCA-EKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMIS 126
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
E + R + + MIS ACV G EE
Sbjct: 127 EVGF---------RPNEVTFLSMIS------ACV----------------YGGSKEE--- 152
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
G+ IH +K LE ++ V N+ +++Y K L + F + K+LVSW
Sbjct: 153 --------GRCIHGLVMKFGVLE-EVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSW 203
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N M+ + Q G E L +F+ + +P+ + VL +C +
Sbjct: 204 NTMIVIH------------LQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVV 251
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI-QGLGT--------------GSFVWNSLIDMY 323
+L + IHG ++ + + AL+ + LG S W +++ Y
Sbjct: 252 RLAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAY 311
Query: 324 GRCG----AIQK-----------------------------NEGWRYFEMMKKEYNMEPA 350
G AI+ EG YFE M K Y ++P
Sbjct: 312 ATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPR 371
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLF 400
++ Y CMVDLL R+G D +K+MP EPSS C + + AA LF
Sbjct: 372 LDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLF 431
Query: 401 ELEPL-----------------------------------SSG--------KVHSFIAGD 417
ELEP +SG K+H F+ GD
Sbjct: 432 ELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGD 491
Query: 418 TSHSLVHKISEKLMRLYSEIK-KIGYMKRIPAC--------------GHSEKLALAFGLI 462
SH KI +KL + ++K ++GY + HSEK+A+AFGL+
Sbjct: 492 WSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLL 551
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
SP P+ + KNLR+CGDCH K +S EK R II+ D+ RFHHF+DG+CSC DY
Sbjct: 552 VVSPMEPIIIRKNLRICGDCHETAKAISLIEK----RRIIIRDSKRFHHFLDGSCSCSDY 607
Query: 523 W 523
W
Sbjct: 608 W 608
>gi|302781198|ref|XP_002972373.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
gi|300159840|gb|EFJ26459.1| hypothetical protein SELMODRAFT_97177 [Selaginella moellendorffii]
Length = 485
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 153/594 (25%), Positives = 234/594 (39%), Gaps = 200/594 (33%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------------CAFLGM 61
T P+ T++ A+ C L +L G ++HA L CG + C L
Sbjct: 6 TAPNNHTLSIAI--AACSALVDLSRGRKIHASLEGCGFQADDHVKNTLMDFYTKCDSLDD 63
Query: 62 FEKM-----PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD 116
+K+ + V SWT ++ LG Y E + F L+ +G++ D
Sbjct: 64 VKKVFRSMGGDAKVVSWTCLIVGCVQLGSYREAFHFFKLMELQGIHA------------D 111
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
Y + +AC SNL+ L G+++H +
Sbjct: 112 TVTYASLL----DAC---------------------------SNLASLSQGRKLHARIAE 140
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
LE+D+++ S++ Y+KC L A F +I +K++V+W+A++ YA
Sbjct: 141 LGLLEADVVLQTSILTMYSKCGRLGEARGIFDRIGEKNIVAWSAIIIAYA---------- 190
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
Q GD TAL+ F +M Q + + + VL AC+
Sbjct: 191 --QNGDCSTALKLFWKMEQAGQKASETTFVSVLYACSHA--------------------- 227
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
L+D + + YF MK E +EP Y C
Sbjct: 228 ---------------------GLVD-----------DAYYYFTTMKSERKLEPLPGHYGC 255
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLS 406
+VDLL RAG+ D +++M S C +AE AA + EL+P S
Sbjct: 256 IVDLLGRAGRLADAEELIQRMKAPQSGVLWTTLLGACKTHGDMKLAERAAERIRELDPGS 315
Query: 407 S-------------------------------------------GKVHSFIAGDTSHSLV 423
+ GK+H F+AGD SH +
Sbjct: 316 ATPYVLLSNVYSEAGRWDLAASVRKRMDDMKVKKPAGKSWVEVRGKLHEFVAGDQSHPKI 375
Query: 424 HKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSP 469
+I +L RL + IK+ GY A HSEKLA+ GL+ + G P
Sbjct: 376 GEIVLELKRLLALIKEAGYAADKSATLHNAEEEEKEGLLYYHSEKLAMVMGLLHSPRGEP 435
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++V+KNLR+C DCH+ K++SK E +R+I++ D +FHHF G CSCGDYW
Sbjct: 436 VQVVKNLRVCSDCHTAAKFISKVE----DRQIVLRDTKQFHHFEHGRCSCGDYW 485
>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 517
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 159/576 (27%), Positives = 232/576 (40%), Gaps = 176/576 (30%)
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI 124
MPER++ +W S++ Y GY + + ++ V R + + MIS
Sbjct: 1 MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEV--------GFRPNEVTFLSMIS- 51
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
ACV G EE G IH +K LE ++
Sbjct: 52 -----ACVH----------------GGNKEE-----------GVCIHGLVMKSGVLE-EV 78
Query: 185 LVNNSLMDFYAKCRYLKVAHCK-FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+LM+ Y K L ++ CK F + K+LVSWN M+ + G EE
Sbjct: 79 KVVNALMNLYGKTGDL-ISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEE---------- 127
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
L +F+ ++P+ + VL C + +L + IHG ++ +T + AL
Sbjct: 128 --GLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTAL 185
Query: 304 ISIQG-LGT--------------GSFVWNSLIDMYGRCG----AIQK------------- 331
+ + LG S W +++ Y G AI+
Sbjct: 186 LDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDH 245
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
EG YFE M K Y +EP ++ Y CMVDL+ R+G D +K
Sbjct: 246 VTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIK 305
Query: 376 KMPFEPSSA------EPC----NPDIAEHAARHLFELEPL-------------------- 405
+MP EPSS C + + AA+ LFELEP
Sbjct: 306 EMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKD 365
Query: 406 ---------------SSG--------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIG 441
+SG K+H F+ GD SH KI +KL + ++K ++G
Sbjct: 366 ASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSELG 425
Query: 442 YMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ R HSEK+A+AFGL+ SP P+ + KNLR+CGDCH K
Sbjct: 426 FKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIRKNLRICGDCHETAK 485
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+S EK R II+ D+ RFHHF++G+CSC DYW
Sbjct: 486 AISLIEK----RRIIIRDSKRFHHFLEGSCSCRDYW 517
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFL 59
P+E VT+ + C N E G+ +H ++ GV +L +
Sbjct: 41 PNE--VTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSC 98
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVY----KACSELK 109
+FE + +N+ SW +M+ ++ G EE + F L D+ + + C ++
Sbjct: 99 KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIG 158
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
R+ + ++ ++ F N C+ +LD++ K GR+E +S F E
Sbjct: 159 VVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLE 204
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 133/536 (24%), Positives = 223/536 (41%), Gaps = 154/536 (28%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
K+C++L +G + ++I FE + V+ ++ M+ G E A+ F+ +
Sbjct: 127 KSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYV--- 183
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
D++ S++ + KC ++ A F ++ +K+LV+W+ M+
Sbjct: 184 --------------------DVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMI 223
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GYA Q + A+E F + ++ N + V+++CA + +LG+
Sbjct: 224 SGYA------------QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGE 271
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGRCG 327
H YV+++ + L+ +G AL+ + + W +LI G
Sbjct: 272 RAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG 331
Query: 328 AIQKN---------------------------------EGWRYFEMMKKEYNMEPAMEQY 354
+++ G++ FE MK+++ +EP +E Y
Sbjct: 332 YSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHY 391
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL RAG+ ++ F+ KMP +P++ C N +I E + L +L P
Sbjct: 392 GCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLP 451
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
SG +VH F GD+SH
Sbjct: 452 QHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHP 511
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+ KI + I+ GY K HSEKLA+AFG++ + G
Sbjct: 512 EMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAG 571
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+P+R++KNLR+C DCH+ TK +SK RE+I+ D RFHHF G CSC DYW
Sbjct: 572 TPIRIVKNLRVCEDCHTATKLISKVFG----RELIVRDRNRFHHFRQGLCSCMDYW 623
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K + L + G + H H + K E D+ V NSL+ YA + A F ++
Sbjct: 124 FLVKSCTKLHCISMGSQAHGH-IIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYY 182
Query: 213 KHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRM 253
+VSW +M+ G+ G E I+G+ Q + A+E F +
Sbjct: 183 VDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVL 242
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
++ N + V+++CA + +LG+ H YV+++ + L+ +G A
Sbjct: 243 QSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTA----------- 291
Query: 314 FVWNSLIDMYGRCGAIQK 331
L+DMY RCG+I K
Sbjct: 292 -----LVDMYARCGSIDK 304
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 64/216 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----------LCAFLG------ 60
PD +T+ + + C KL+ + +G Q H H+I G E + A G
Sbjct: 117 PD--NLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAAT 174
Query: 61 --------------------------------MFEKMPERNVFSWTSMMGMYNVLGYYEE 88
+F++MPE+N+ +W++M+ Y ++++
Sbjct: 175 LIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK 234
Query: 89 IVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138
V LF +L +G V +C+ L +G+ +DY++ N + ++D
Sbjct: 235 AVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVD 294
Query: 139 MFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIH 171
M+ +CG ++ A FE E+D + + L G +H
Sbjct: 295 MYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 40/174 (22%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+LQS + + V+ + C L LELG + H +++ G+ L LG
Sbjct: 241 VLQSQGVRANETVMVS---VISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYA 297
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+FE +PER+ SWT+++ + GY E + F +++ G
Sbjct: 298 RCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTA 357
Query: 101 VYKACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
V ACS G ++ D+ + + E C ++D+ + G++E A
Sbjct: 358 VLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGC----MVDLLGRAGKLEEA 407
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/233 (17%), Positives = 94/233 (40%), Gaps = 39/233 (16%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF----YAKCRYLKVAHCKFSKIKQKHLVS 217
S L H K IH + ++ + D+ + L+ F + + A FS+I+ +L
Sbjct: 28 SDLTHLKIIHAYMIRTHII-CDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFI 86
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+NAM+ G+ + + + A F+ + + + P+ ++ ++ +C ++
Sbjct: 87 FNAMIRGH------------SGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHC 134
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---------------FVWNSLIDM 322
+G + HG++++H + V +L+ + + W S+I
Sbjct: 135 ISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRG 194
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+ +CG ++ + F+ M E + + M+ A+ FD + K
Sbjct: 195 FNKCGDVESAR--KLFDQMP-----EKNLVTWSTMISGYAQNNHFDKAVELFK 240
>gi|302803021|ref|XP_002983264.1| hypothetical protein SELMODRAFT_118039 [Selaginella moellendorffii]
gi|300148949|gb|EFJ15606.1| hypothetical protein SELMODRAFT_118039 [Selaginella moellendorffii]
Length = 524
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 160/584 (27%), Positives = 233/584 (39%), Gaps = 172/584 (29%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + ++C K L LG +VHA + GV FL +FE+MP
Sbjct: 28 YASLLRQCGKARALALGRRVHADMARWGVGQGPFLANFLIQMYGSCGSIEEACAVFERMP 87
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----ACSELKDH---RVGKDVYD 119
+ +W M+ Y G+ ++ F+ + G+ + +K++ R G +
Sbjct: 88 HKEPHTWNFMIQAYAQNGHPQQSWKTFHAMQGRGIVSWNLLIAALIKNNLHDRDGDALRL 147
Query: 120 YMISIKFEGNACVKRPVLDMFI----KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
+ + + C RP F+ C R L+ L G+ IH
Sbjct: 148 FAAMEQQQSYGC--RPNRVTFVIALDACAR---------------LAALTQGQRIHSTLA 190
Query: 176 KKD-DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
D +L SD+++N +L++ YAKC L+ + F + + VSW AMLA YA
Sbjct: 191 AIDSELASDVVLNTALINLYAKCGRLEQSKSVFDAMARHDTVSWTAMLAAYA-------- 242
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
Q G A E F M + + ++L +L AC+ HG LR
Sbjct: 243 ----QNGHPGVADELFLVMCLEGVGLDDVTLVSLLVACS-----------HGGTLR---- 283
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
G F + + E+ + P ME +
Sbjct: 284 --------------------------------------RGRESFLLARGEFGIVPTMEHF 305
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS-AEPC-----------NPDIAEHAARHLFEL 402
CMVDLL RAGQ ++ MPF+ + A P + + AA LF L
Sbjct: 306 LCMVDLLGRAGQTQQAEELIQTMPFDTDAIAMPWMSLLAACKSHRDEERGARAAERLFVL 365
Query: 403 EP--------LSS-----------------------------------GKVHSFIAGDTS 419
+P LSS G +H F+AGD +
Sbjct: 366 DPHGAAPYLLLSSIYAASGKKDKVAELRKLMELRGVKKEPGYSSIEIDGALHVFVAGDKT 425
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
H L I +L L S++ G + + A HSEKLA+AFGLI+T P +PL V KNLR+C
Sbjct: 426 HPLQDHIHAELQMLESKLGIHGVQEEMVA-HHSEKLAMAFGLIATPPRTPLLVTKNLRVC 484
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CH+ K VS R R I++ D+ RFHH DG CSCGDYW
Sbjct: 485 VECHTTIKLVS----RIVGRRIVVRDSARFHHCEDGVCSCGDYW 524
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
LE +R+ ++ + +L C + + LG+ +H + R
Sbjct: 10 LEAINRLDNAAAPSSSDRYASLLRQCGKARALALGRRVHADMAR---------------- 53
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
G+G G F+ N LI MYG CG+I+ E FE M
Sbjct: 54 WGVGQGPFLANFLIQMYGSCGSIE--EACAVFERM 86
>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
Length = 1070
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 142/492 (28%), Positives = 214/492 (43%), Gaps = 138/492 (28%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+NL + HG+++H H + + +D +V +SL+D YAKC L A F I+ K+ +SW
Sbjct: 53 ANLGSIDHGRQVHCHFIVSE-YANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISW 111
Query: 219 NAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQ 259
AM++GYA G +EE I+GF Q G G A F+ M + +
Sbjct: 112 TAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVD 171
Query: 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVL--------------------RHHIQLSTG 298
+ + LS ++ ACA + G+++HG L RH +S
Sbjct: 172 ILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWT 231
Query: 299 ---VGIA--------------LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
VG+A ++S G+ + LI G ++K G F+ M
Sbjct: 232 SLIVGMAQHGQAEKALALYDDMVS-HGVKPNEVTFVGLIYACSHVGFVEK--GRELFQSM 288
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------- 387
K+Y + P+++ Y C++DLL R+G D+ N + MPF P EP
Sbjct: 289 TKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD--EPTWAALLSACKRQGRG 346
Query: 388 --NPDIAEH-------------------------------AARHLFELE----PLSSG-- 408
IA+H A R L E+E P S
Sbjct: 347 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 406
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM--------------KRIPACG 450
+ F AG+TSH L I L +L E++ + GY+ K
Sbjct: 407 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 466
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSE+ A+A+GL+ PG+P+R++KNLR+CGDCH K++S+ EREII+ D R+H
Sbjct: 467 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT----EREIIVRDATRYH 522
Query: 511 HFVDGACSCGDY 522
HF G CSC D+
Sbjct: 523 HFKGGKCSCNDF 534
>gi|30686506|ref|NP_173402.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75263158|sp|Q9FXH1.1|PPR52_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g19720; AltName: Full=Protein DYW7
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein [Arabidopsis thaliana]
gi|332191770|gb|AEE29891.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 894
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 182/723 (25%), Positives = 279/723 (38%), Gaps = 224/723 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD+ + I Q C ++E G +H+ +I G+ C +
Sbjct: 179 PDD--FLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFAT 236
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC-------------- 105
F +M ER+V +W S++ Y G +EE V L + EG+
Sbjct: 237 KFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLG 296
Query: 106 ---------SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK---CGRMEMASGEF 153
+++ + DV+ + I + ++ LDMF K G + A
Sbjct: 297 KCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIM 356
Query: 154 EEKDF-SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
S L ++ G E+H +K ++ D+LV NSL+D Y+KC L+ A F +K
Sbjct: 357 SAVSACSCLKVINQGSEVHSIAVKMGFID-DVLVGNSLVDMYSKCGKLEDARKVFDSVKN 415
Query: 213 K-----------------------------------HLVSWNAMLAGYALGGFREE---- 233
K ++++WN M++GY G E
Sbjct: 416 KDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDEGEAMDL 475
Query: 234 --------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
I G+ Q G + ALE F +M + PN++++ +L ACA
Sbjct: 476 FQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILSLLPACA 535
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--------------GLGTGSFV-WNS 318
+ G K+ +EIHG VLR ++ V AL G+ T + WNS
Sbjct: 536 NLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGMETKDIITWNS 595
Query: 319 LIDMY-------------------------GRCGAI--------QKNEGWRYFEMMKKEY 345
LI Y G +I +EG + F + +Y
Sbjct: 596 LIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGKKVFYSIANDY 655
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM------PFEPSSAEPC----NPDIAEHA 395
++ PA+E MV L RA + ++ L F+++M P S C + D+A HA
Sbjct: 656 HIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRIHGDIDMAIHA 715
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
A +LF LEP ++ +H+
Sbjct: 716 AENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQSWIEVRNLIHT 775
Query: 413 FIAGDTSH---SLVHKISEKLMRLYSEIKK------IGYMKRIPACG-HSEKLALAFGLI 462
F GD S +++ + EK+ RL + + I R CG HSEK A+AFGLI
Sbjct: 776 FTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWIEEEGREETCGIHSEKFAMAFGLI 835
Query: 463 STSPGS--PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
S+S S +R++KNLRMC DCH KYVSK +I++ D HHF +G CSC
Sbjct: 836 SSSGASKTTIRILKNLRMCRDCHDTAKYVSK----RYGCDILLEDTRCLHHFKNGDCSCK 891
Query: 521 DYW 523
DYW
Sbjct: 892 DYW 894
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 140/323 (43%), Gaps = 58/323 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+ M ERN+F+W++M+G Y+ + E+ LF L++ +GV + C+ D
Sbjct: 137 VFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGD 196
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFS--NLSLL- 164
GK ++ +I + V +L ++ KCG ++ A+ F E+D N LL
Sbjct: 197 VEAGKVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLA 256
Query: 165 -----KHGKEIH-PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKH 214
KH + + ++K+ + L+ N L+ Y + A K++
Sbjct: 257 YCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITAD 316
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ +W AM++G G R + AL+ F +M + PN +++ ++AC+
Sbjct: 317 VFTWTAMISGLIHNGMRYQ------------ALDMFRKMFLAGVVPNAVTIMSAVSACSC 364
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+K G E+H ++ G V NSL+DMY +CG ++ +
Sbjct: 365 LKVINQGSEVHSIAVK----------------MGFIDDVLVGNSLVDMYSKCGKLE--DA 406
Query: 335 WRYFEMMKKE--YNMEPAMEQYC 355
+ F+ +K + Y + YC
Sbjct: 407 RKVFDSVKNKDVYTWNSMITGYC 429
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 30/212 (14%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E D+ V L+ YAKC + A F +++++L +W+AM+ Y+ E+
Sbjct: 112 EPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVA----- 166
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ F M++ + P+ +L CA + GK IH V++ + V
Sbjct: 167 -------KLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVVIKLGMSSCLRVS 219
Query: 301 IALISIQG------LGTGSF---------VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
+++++ T F WNS++ Y C + E + M+KE
Sbjct: 220 NSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAY--CQNGKHEEAVELVKEMEKE- 276
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ P + + ++ + G+ D ++ M+KM
Sbjct: 277 GISPGLVTWNILIGGYNQLGKCDAAMDLMQKM 308
>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
Length = 903
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 147/565 (26%), Positives = 244/565 (43%), Gaps = 143/565 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF--------------YLLIDEGVYKACS 106
+FE +P N SW +M+ + G + + LF YL + E V
Sbjct: 380 LFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPE 438
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD--------- 157
E + G+ ++ ++S + + V+ M+ CG ++ A+ F+
Sbjct: 439 EARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVS 498
Query: 158 ----FSNLSLLKHGKE------------IHPH-------------------------HLK 176
S+LS HGK + P+ HL+
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR 558
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLVSWNAMLAGYALGGFREEIT 235
+ES++ V +L Y +C L+ A F K+ ++ +V +NAM+A Y+ G E
Sbjct: 559 HSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGE-- 616
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL+ F RM Q +P+ S VL+AC+ G G+ + ++
Sbjct: 617 ----------ALKLFWRMQQEGSRPDEQSFVSVLSACSHG-----GLADEGWEIFRSMRQ 661
Query: 296 STGVGIA----------------------LISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
S G+ + LI + VW +L+ G C + +
Sbjct: 662 SYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLL---GACRKYRDVD 718
Query: 334 GWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
R M +E ++P E Y + ++LA AG++D+ +M + +
Sbjct: 719 RGRLANSMVRE--LDPGDESAYVVLSNILAGAGKWDEAAEVRTEME---------SRGLR 767
Query: 393 EHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------- 443
+ A + E++ +VH F+AGD SH +I +L RL++EI++IGY+
Sbjct: 768 KQAGKSWIEIKS----RVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRK 823
Query: 444 -----KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERE 498
K C HSE+LA+A G++S+S + +RV+KNLR+C DCH+ TK++SK +E
Sbjct: 824 VDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKE-- 880
Query: 499 REIIMIDNYRFHHFVDGACSCGDYW 523
I++ D +RFHHFVDG+CSCGDYW
Sbjct: 881 --IVVRDTHRFHHFVDGSCSCGDYW 903
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 90/404 (22%), Positives = 152/404 (37%), Gaps = 117/404 (28%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC-----------A 57
L Q M L +T + C K+ +H+ + G+E A
Sbjct: 215 LFQRMQLEGVRPARITLVITLSVCAKIRQAR---AIHSIVRESGLEQTLVVSTALASAYA 271
Query: 58 FLG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--------- 101
LG +F++ ER+V SW +M+G Y G+ E LF ++ EG+
Sbjct: 272 RLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVN 331
Query: 102 -YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME------------- 147
CS L R G+ ++ + + + + +LDM+ +CG E
Sbjct: 332 ASTGCSSL---RFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPGNA 388
Query: 148 -----MASGEFEEKD-------FSNLSL--------------------------LKHGKE 169
M +G ++ F + L + G++
Sbjct: 389 VSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRK 448
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK--IKQKH-LVSWNAMLAGYA 226
+H + S+ + +++ YA C + A F + ++ +H +VSWNA+
Sbjct: 449 LHSR-IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAI----- 502
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
I+ +Q+G G+ AL FF RM + PN I+ VL ACA G +H
Sbjct: 503 -------ISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHD 555
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ LRH G+ + FV +L MYGRCG+++
Sbjct: 556 H-LRH---------------SGMESNVFVATALASMYGRCGSLE 583
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/415 (22%), Positives = 157/415 (37%), Gaps = 111/415 (26%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
VT+ + + C +L +L G +HA ++ G+E + L +FE
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFE 187
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+M ER++ SW + + G + + LF + EGV A I+
Sbjct: 188 RM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPA----------------RIT 230
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ + C K ++ + IH +++ LE
Sbjct: 231 LVITLSVCAK------------------------------IRQARAIHS-IVRESGLEQT 259
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L+V+ +L YA+ +L A F + ++ +VSWNAML YA Q+G
Sbjct: 260 LVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYA------------QHGHM 307
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
A F+RM+ + P+ ++L C+ + G+ IH L
Sbjct: 308 SEAALLFARMLHEGIPPSKVTLVNASTGCSS---LRFGRMIHACALE------------- 351
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+GL + N+L+DMY RCG+ + E FE + + M+ ++
Sbjct: 352 ---KGLDRDIVLGNALLDMYTRCGSPE--EARHLFE------GIPGNAVSWNTMIAGSSQ 400
Query: 364 AGQFDDTLNFMKKMPFE---PSSAEPCNPDIAEHAARHLFELEPLSSG-KVHSFI 414
GQ L ++M E P A N + E A + E ++ G K+HS I
Sbjct: 401 KGQMKRALELFQRMQLEGMAPVRATYLN--LLEAVASNPEEARAMAEGRKLHSRI 453
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 39/218 (17%)
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
LL G+ IH + LE +L N L+ Y KC L FS+++ + SW +
Sbjct: 44 LLSQGRRIHAR-IVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTI- 99
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
IT +T++G + A+ F RM Q ++ + ++ VL ACA++ G+
Sbjct: 100 -----------ITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGR 148
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
IH +++ GL S + N L+ +YG CG + FE M+
Sbjct: 149 SIHAWIVE----------------SGLEGKSVLANLLLHIYGSCGCVAS--AMLLFERME 190
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
++ + + + A++G D L ++M E
Sbjct: 191 RD------LVSWNAAIAANAQSGDLDMALELFQRMQLE 222
>gi|357452657|ref|XP_003596605.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485653|gb|AES66856.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 261/599 (43%), Gaps = 152/599 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F+ +P+ + + ++++ G E +N+ L + G V KAC+ +D
Sbjct: 34 LFDNIPQPDPTTSSTLISALTTHGLLNEAINICTSLRERGIKLDIPVFMAVAKACAASRD 93
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDFSNLSL---- 163
K++++ N V ++ + KC +E F++ +D L++
Sbjct: 94 ALNVKELHNDATRCGAMFNVFVGNALIHAYGKCKCVEGERRVFDDMVVRDVKGLNVFHEM 153
Query: 164 ------------------------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
LK GK IH ++ +E ++ V N+L++ YAKC
Sbjct: 154 GWNGVKLDPVTVSSILPACADLKDLKSGKAIHGFAVRNGMVE-NVFVCNALVNLYAKCLC 212
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY-GDG-ET------ALEFFS 251
++ AH F + + +VSW+ +L + + + ++ F+Q DG ET A+E
Sbjct: 213 VREAHAIFDLMPHRDVVSWSGVLTYFTNKEYEKGLSLFSQMCRDGVETNEVTWKAMEMLR 272
Query: 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311
+M +PN I++S +L AC + ++ KEIH YV RH + IA+ +
Sbjct: 273 KMQNMGFKPNEITISSILQACYLSESLRMCKEIHYYVFRHWKVWNVFDMIAIKDV----- 327
Query: 312 GSFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYF 338
W ++I+ G ++ EG + F
Sbjct: 328 --VAWTTMINANAMHGNGKEALFLFEKMLLSMVKPDSVTFICVLSSCSHSRLVEEGVQIF 385
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----N 388
M K++ +EP Y C+VD+ +RAG+ ++ F+++MP P++ C N
Sbjct: 386 NSMSKDHLVEPNAIHYSCVVDIYSRAGRLNEAYEFIQRMPMGPTAGAWKSLLAGCRVYKN 445
Query: 389 PDIAEHAARHLFELEPLSS----------------------------------------- 407
++A+ +A+ LFE+EP S
Sbjct: 446 VELAKISAKKLFEIEPSRSRDYVALCNILVTAKLWSEASKIRMFMKESGITKTPGCSWLH 505
Query: 408 --GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-CGHSEKLALAFGLIST 464
+VH+F+AGD S+ +E L + + I +++ + C HSEKLA+AFG+++
Sbjct: 506 VGNRVHNFVAGDKSNME----NENLGDTDNVLHDIDQEEKVESLCKHSEKLAVAFGILNL 561
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ S +RV KNLR+CGDCH+ KY++K + I++ D++RFHHF +G CSC D W
Sbjct: 562 NGQSTIRVFKNLRICGDCHNAIKYMAKVV----DVMIVVRDSFRFHHFKNGNCSCNDLW 616
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 153/582 (26%), Positives = 235/582 (40%), Gaps = 203/582 (34%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAF----------LGMFEKMP 66
+++ + C L +L G VHA ++ V L L MF+ MP
Sbjct: 180 FSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMP 239
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
RN+ SW S++ L+ EGV++A + + GK + +++
Sbjct: 240 HRNLVSWNSLIA---------------GLVKKEGVFEAIEAFRIMQ-GKGMGFSWVTLT- 282
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
+ C R ++ L GKEIH + K + D V
Sbjct: 283 -----------TILPVCAR---------------VTALGSGKEIHAV-IVKSTAKPDAPV 315
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
NSL+D YAKC + F+ ++ K L SWN ++ GYA+ G E A
Sbjct: 316 LNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTE------------A 363
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+E F MI + P+ I+ +L+ C+ G+A
Sbjct: 364 MESFQEMICSGFSPDGITFIALLSGCSHA------------------------GLA---- 395
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
++G R FEMMK ++ + P +E Y C+VD+L RAG+
Sbjct: 396 -------------------------DDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGR 430
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------- 408
+ L +K MPF+P+ + C N +AE A+ LFELEP ++G
Sbjct: 431 IKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNI 490
Query: 409 -----------------------------------KVHSFIAGDTS---HSLVHKISEKL 430
K+H+F+AG ++ +S+ +K K
Sbjct: 491 YANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWK- 549
Query: 431 MRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
RL ++++GY M+ + CGHSE+LA F LI+T+ G P+R+ KNL
Sbjct: 550 -RLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNL 608
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
R+C DCHS K +SK R I++ D RFHHF DG CS
Sbjct: 609 RVCVDCHSWVKTLSKVTG----RVIVLRDTNRFHHFKDGVCS 646
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
LA F LI+T+ G P+R+ KNL +C DCHS K VSK
Sbjct: 700 LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSK 736
>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
Length = 865
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 157/569 (27%), Positives = 236/569 (41%), Gaps = 171/569 (30%)
Query: 96 LIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
L+ G+ C L+ HR+ DVY G A V DM+ KCGR+E A F+
Sbjct: 327 LLAHGMEAHCFFLR-HRLEPDVY--------TGTAFV-----DMYAKCGRLEYAQKVFDT 372
Query: 156 KDFSNLSLLKH--------GKEIHP----HHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+ N++ G+ H +K++ L+ D+ N L+ Y+ A
Sbjct: 373 LELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQA 432
Query: 204 HCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
++K ++VSW ++ I+G GD E + FF+ M + +Q
Sbjct: 433 VLLLRQMKAIGLTPNVVSWTSL------------ISGSCHNGDYEDSFYFFNEMQKDHVQ 480
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVL-RHHIQLSTGVGIALISI----QGLGTGSF 314
P+ +++S +L ACA + GKE+H + L R V ALI + L + +
Sbjct: 481 PSVVTMSVLLRACAGLALLAKGKELHCFALRRRAYDRDMVVATALIDMYSKSGNLASATR 540
Query: 315 V------------WNSLI-----------------DM---YGRCGAIQK----------- 331
+ WN+++ DM GA K
Sbjct: 541 IFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFDDMCSASAGAGAGLKPDSITFTALLT 600
Query: 332 --------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
EGW YF+ M+ Y + P +E Y CMVDLLAR G D+ +F+ + PF+ ++
Sbjct: 601 ACRSMELITEGWDYFDAMESRYGVTPTVENYACMVDLLARCGYLDEATDFINRSPFKSAA 660
Query: 384 A------EPC----NPDIAEHAARHLFELEPLSSGK------------------------ 409
+ C N +AE AAR LF+LEP +S
Sbjct: 661 SLWGALLTGCVVHGNLALAEAAARKLFKLEPYNSANYLQMVSLYEREQMFDEAESLKYAM 720
Query: 410 -------------------VHSF-IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK----- 444
+H F + G H +I ++L+RL +I+K GY+
Sbjct: 721 KARALNTRPGWSWIQIEQSIHVFQVEGKPPHPDTAEIYQQLVRLVLQIRKAGYVADTSCI 780
Query: 445 --RIPA-------CGHSEKLALAFGLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
+P H+EKLA+ +GLI S + G+P+RVIKN RMC DCH K++S
Sbjct: 781 AYNVPEEDKEKLLLSHTEKLAITYGLIHSDASGTPIRVIKNTRMCSDCHEVAKHISALCG 840
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDYW 523
R+II+ D RFHHF DG CSC D W
Sbjct: 841 ----RQIILRDADRFHHFTDGKCSCNDRW 865
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/239 (19%), Positives = 95/239 (39%), Gaps = 50/239 (20%)
Query: 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224
+ G+ +H H K + + LV L YA+ + A + + + V+WN ++A
Sbjct: 190 REGQAVHAHAAKAGHVAAHPLVPGFLAGMYAESADVGAAR-RVLETEDAPPVAWNVVVAC 248
Query: 225 YALGGFREE--------------------------ITGFTQYGDGETALEFFSRMIQTDM 258
A G ++ ++G ++G A M++ +
Sbjct: 249 CARLGLVDDALDLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLERGI 308
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318
P++ S+S +L + A + G E H + LRH ++ G A
Sbjct: 309 PPDSSSMSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDVYTGTA---------------- 352
Query: 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+DMY +CG ++ + + F+ ++ + + +V + AGQFD L+ +++M
Sbjct: 353 FVDMYAKCGRLEYAQ--KVFDTLELRN-----ITTWNSLVAGYSNAGQFDHALDLVEEM 404
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 161/598 (26%), Positives = 235/598 (39%), Gaps = 212/598 (35%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHL----------IV---------CGVELCAF 58
PDE T Y + C ++ELG QVH+ + IV CG E+
Sbjct: 194 PDEST--YVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG-EVETA 250
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
G+F+ + ++V SW +++G Y + Y+E + LF ++ G DV
Sbjct: 251 CGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSG-----------ETPNDVT 299
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
M+S+ AC +D+ GR + K +N S L+
Sbjct: 300 --MLSVL---PACAHLGAIDI----GRWIHVYIDKRLKGVTNASSLR------------- 337
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
SL+D YAKC ++ AH F+ + K L SWNAM+ G+A+
Sbjct: 338 ---------TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAM----------- 377
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+G + + + FSRM + ++P+ I+ G+L+AC+ LG+ HI
Sbjct: 378 -HGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR---------HI----- 422
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
F M ++Y M P +E Y CM+
Sbjct: 423 ---------------------------------------FRSMTQDYKMTPKLEHYGCMI 443
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEP---- 404
DLL +G F + + M EP C N ++AE A++L ++EP
Sbjct: 444 DLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPS 503
Query: 405 -----------------------LSSGK----------------VHSFIAGDTSH----- 420
L +GK V F+ GD H
Sbjct: 504 SYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNRE 563
Query: 421 ---------------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTS 465
V SE L + E K+ G ++ HSEKLA+AFGLIST
Sbjct: 564 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTK 617
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG+ L ++KNLR+C +CH TK +SK K REI+ D RFHHF DG CSC DYW
Sbjct: 618 PGTKLTIVKNLRVCRNCHEATKLLSKIYK----REIVARDRTRFHHFRDGVCSCNDYW 671
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 157/385 (40%), Gaps = 79/385 (20%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + + C K G Q+H ++ G +L ++ +F++
Sbjct: 66 TFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRS 125
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
R+V S+T+++ Y G ++ +L D KDV + I
Sbjct: 126 SHRDVVSYTALITGY----------------ASRGDIRSAQKLFDEIPVKDVVSWNAMIS 169
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH------GKEIHPHHLKKDD 179
+ L++F + +M + E + LS H G+++H +
Sbjct: 170 GYAETGCYKEALELFEEMMKMNVRPDE--STYVTVLSACAHSGSIELGRQVHSW-VDDHG 226
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+S+L + N+L+D Y+KC ++ A F + K ++SWN ++ GY +E
Sbjct: 227 FDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKE------ 280
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
AL F M+++ PN +++ VL ACA + +G+ IH Y+ +
Sbjct: 281 ------ALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKR-------- 326
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
++G+ S + SLIDMY +CG I+ + F M + ++ + M+
Sbjct: 327 ------LKGVTNASSLRTSLIDMYAKCGDIEAAH--QVFNSM-----LHKSLSSWNAMIF 373
Query: 360 LLARAGQFD---DTLNFMKKMPFEP 381
A G+ D D + M+K+ EP
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEP 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
L A F I++ + + WN M+ G+AL D ++L + M+ +
Sbjct: 14 LPYATSVFETIQEPNQLIWNTMIRGHALSS------------DPVSSLTLYVCMVSLGLL 61
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
PN+ + +L +CA+ K F G++IHG VL+ L V +LIS+
Sbjct: 62 PNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISM 108
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 174 bits (442), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 156/620 (25%), Positives = 244/620 (39%), Gaps = 192/620 (30%)
Query: 38 LELGIQVHAHLIVCG-----------VELCAFLG-------MFEKMPERNVFSWTSMMGM 79
+E G ++H+ L +CG V + A G +F + ER V SW++M+G
Sbjct: 1 MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139
Y + G +E + LF+ + ++G RV + ++ F G +
Sbjct: 61 YALHGRGQEALLLFHRMRNDG-----------RVEPN------AMTFTG----------V 93
Query: 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCR 198
F CG +E L+ G+EIH + +L+S + ++ N+L++ Y +C
Sbjct: 94 FNACGVIED---------------LEQGREIHALAMASGELKSSNAILENALLNMYVRCG 138
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258
L+ A F + SW +M IT T+ + ALE F RM +
Sbjct: 139 SLEEARKVFDTMDHPDAFSWTSM------------ITACTENCELLEALELFHRMNLEGI 186
Query: 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI------------ 306
P +++L+ VL ACA K+GK+IH + S AL+ +
Sbjct: 187 PPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSK 246
Query: 307 --QGLGT-GSFVWNSLIDMYGRCGAIQK-------------------------------- 331
+ T S W ++I + G +
Sbjct: 247 VFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGL 306
Query: 332 -NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------ 384
E +F M ++Y + P YC +D + RAG+ D + MPF P +
Sbjct: 307 IKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLL 366
Query: 385 EPC----NPDIAEHAARHLFELEPLSS--------------------------------- 407
C + A A L +L P S
Sbjct: 367 NACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGLKK 426
Query: 408 ----------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH------ 451
KVH F+AGD +H +I +L +L +++ GY+ H
Sbjct: 427 VPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEE 486
Query: 452 --------SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIM 503
SEKLA+AFGLI+T PG+PL ++KNLR+C DCH+ TK ++K + R I++
Sbjct: 487 KEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMR----RRIVV 542
Query: 504 IDNYRFHHFVDGACSCGDYW 523
D +RFHHF DG CSC DYW
Sbjct: 543 RDTHRFHHFEDGQCSCKDYW 562
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 200/476 (42%), Gaps = 133/476 (27%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G ++H L K +SD+ V N L+ FY C +L A F ++ ++ LVSW++M+A
Sbjct: 100 LQTGLDLHSL-LFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERDLVSWSSMIA 158
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+A GF G AL F RM + ++P+ + + V++A + + +LGK
Sbjct: 159 CFAKNGF------------GYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGK 206
Query: 283 EIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGS-FVWNSLID---MYG 324
I G++ R+ ++ + +G AL+ + +G + W +LI+ ++G
Sbjct: 207 WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHG 266
Query: 325 RCGAIQK------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
R + +EGW FE ++ EY MEP E Y
Sbjct: 267 RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHY 326
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
CMVDLL RAG ++ F+ MP P+S ++AE + EL+
Sbjct: 327 GCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDS 386
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G +H F+AGD +H
Sbjct: 387 YHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHP 446
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
I E L+ + +K +GY I HSEKLA+AF L+
Sbjct: 447 QFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDS 506
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RV+KNLR+C DCH KY S EREII+ D RFHHF G+CSC DYW
Sbjct: 507 RTIRVMKNLRICHDCHCFMKYASDV----FEREIIIRDRNRFHHFSKGSCSCRDYW 558
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 37/192 (19%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCA 57
+M +PD T+ + + C +L + G+ +H+ L G + C
Sbjct: 79 TMAGVSPDH--FTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133
Query: 58 FLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL-----------IDEGVY 102
FL FE+MPER++ SW+SM+ + G+ E + LF + I V
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL- 161
A S L D +GK + ++ E + ++DMF +CG +E + F+E N+
Sbjct: 194 SAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVL 253
Query: 162 --SLLKHGKEIH 171
+ L +G +H
Sbjct: 254 TWTALINGLAVH 265
>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
Length = 815
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 176/700 (25%), Positives = 267/700 (38%), Gaps = 212/700 (30%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---------VCGVELCAFLG------ 60
+ PD VTY + C L + Q HA ++ VC L ++
Sbjct: 136 SQPD--YVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDS 193
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F +M + S+ M+ Y G EE + LF + + G V A
Sbjct: 194 ARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVG 253
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK------------------------- 142
L D G+ ++ +++ F N V LD + K
Sbjct: 254 LDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVI 313
Query: 143 ------CGRMEMASGEFEEKDFSN-----------LSL------LKHGKEIHPHHLKKDD 179
G+++ + F+E F+ LS+ L+ G+++H +
Sbjct: 314 ITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQ-VVVSM 372
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ D V+NSL+D YAKC + A F ++ + V W AM I+ Q
Sbjct: 373 ADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAM------------ISANVQ 420
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTG 298
G E L+ F M + ++ + + + VL A A + LGK++H V+R + + +G
Sbjct: 421 RGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGFMNVYSG 480
Query: 299 VGI------------ALISIQGLGTGSFV-WNSLIDMYGRCGAIQKN------------- 332
+ A+ + + + + V WN+L+ Y + G +
Sbjct: 481 CALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQ 540
Query: 333 --------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG +YF M YN+ P E Y MVD L R+G+FD+
Sbjct: 541 PDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEK 600
Query: 373 FMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG-------------- 408
M +MPFEP S C N +A AA LF ++ L
Sbjct: 601 LMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAG 660
Query: 409 ------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
KVH F A D H +I K+ L +++
Sbjct: 661 QWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQME 720
Query: 439 KIGYMKRIPACGH---------------SEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K GY I +C H SE+LA+AF LI+T GSP+ V+KNLR C DCH
Sbjct: 721 KEGYDPDI-SCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCH 779
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ K +SK REI + D+ RFHHF DG+CSCGDYW
Sbjct: 780 AAIKVISKIVG----REITVRDSNRFHHFRDGSCSCGDYW 815
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 132/333 (39%), Gaps = 62/333 (18%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSEL----- 108
+LC + ++MP RN FS ++ Y G + + DE A + +
Sbjct: 58 QLCQARQLLDQMPNRNSFSIDIIISGYVKSGNL-TVARRIFDDTDERTVVAWTTMIGAYS 116
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K +R G D + + G+ + + C +E+A ++ ++ ++K G
Sbjct: 117 KSNRFG-DAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQ----AHAQIVKLG- 170
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
HHL V N+L+D Y K L A F ++ VS+N M+ GYA
Sbjct: 171 ----HHLNHR-------VCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANN 219
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G EE A+E F M +P+ + + V++A + G++IHG+V
Sbjct: 220 GLNEE------------AIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFV 267
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
++ FV N+ +D Y + + + ++K +N
Sbjct: 268 VK----------------TSFIRNVFVGNAFLDFYSKHDCVNE---------VRKLFNEM 302
Query: 349 PAME--QYCCMVDLLARAGQFDDTLNFMKKMPF 379
P ++ Y ++ A G+ ++++ +++ F
Sbjct: 303 PELDGVSYNVIITAYAWVGKVKESIDLFQELQF 335
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 226/578 (39%), Gaps = 174/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP +++ SW S+M + GY +N F + E
Sbjct: 119 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE--------------------- 157
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
G + +L + C M G +E GK +H +K +
Sbjct: 158 ------SGRQPNEVTLLSVVSACADM----GALDE-----------GKSLHGVVVKLG-M 195
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
V NSL++ Y K +L A F ++ + LVSWN+M+ + G+
Sbjct: 196 SGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY---------- 245
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
E ++ F+ M + + P+ ++ +L AC + + IH Y+ R +
Sbjct: 246 --AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 303
Query: 301 IALISIQG-LGT--------------GSFVWNSLIDMYG--RCG--AIQ----------- 330
AL+++ LG W +++ Y CG AI+
Sbjct: 304 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 363
Query: 331 ------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG +YFE+M + Y +EP ++ Y CMVDLL R+G+ +D
Sbjct: 364 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 423
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
+K MP EPSS C N ++ + A L L+P LS+
Sbjct: 424 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 483
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K+H F+ GD H +I KL L +I++
Sbjct: 484 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 543
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G + HSEKLA+AFGL+ T G PL + KNLR+CGDCHS
Sbjct: 544 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 603
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K+ S EK R II+ D+ RFHHF DG CSC DYW
Sbjct: 604 AKFASLLEK----RTIIIRDSKRFHHFADGLCSCRDYW 637
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 39/207 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD + + L+ Y K Y + A F ++ K LVSWN++++G + G+
Sbjct: 95 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYL---------- 144
Query: 242 DGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L F RM ++ QPN ++L V++ACA + GK +HG V++
Sbjct: 145 --GACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVK---------- 192
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G+ + V NSLI+MYG+ G + + + FE M ++ + MV +
Sbjct: 193 ------LGMSGKAKVVNSLINMYGKLGFL--DAASQLFEEMPVR-----SLVSWNSMVVI 239
Query: 361 LARAGQFD---DTLNFMKKMPFEPSSA 384
G + D N MK+ P A
Sbjct: 240 HNHNGYAEKGMDLFNLMKRAGINPDQA 266
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 155/623 (24%), Positives = 250/623 (40%), Gaps = 203/623 (32%)
Query: 14 DLTNPDECTVTYAL-----------------IFQRCPKLNNLELGIQVHAHLIVCGVELC 56
D +NP E + YA + + C KL + G QVH ++ +
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFD 143
Query: 57 AFLG------------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
F+G +F++MP R+V SW SM+ Y G E +F + D
Sbjct: 144 PFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSD 203
Query: 99 EGVYKACSELKDHRVGK------DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152
+ V S + + + D++ M+S+ + VL
Sbjct: 204 KDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAI------------ 251
Query: 153 FEEKDFSNLSLLKHGKEIHPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
++L ++ GK +H + + K +L S + ++L+D Y+KC Y++ A+ F I
Sbjct: 252 ------ADLGFVEEGKWLHAYVSMNKIELSSGF-IGSALIDMYSKCGYIENAYHVFRSIS 304
Query: 212 -QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
++++ WN+M++G A+ G E AL+ F M + D++PN I+ G+L+
Sbjct: 305 HRRNIGDWNSMISGLAIHGLARE------------ALDIFVEMERMDIEPNEITFLGLLS 352
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
C+ HG ++
Sbjct: 353 TCS-----------HGGLVE---------------------------------------- 361
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP--------- 381
EG YFE M ++Y + P ++ Y CM+DL RAG+ +D L ++ MPFE
Sbjct: 362 --EGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAIL 419
Query: 382 -SSAEPCNPDIAEHAARHLFELEP------------------------------------ 404
+S + + +I + AA EL P
Sbjct: 420 SASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKK 479
Query: 405 -------LSSGKVHSFIAG---DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---- 450
L +GKVH F+ G D+S+S ++ K+ + S +K GY +
Sbjct: 480 IAGCSSMLVNGKVHEFLLGKELDSSYS--GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIE 537
Query: 451 ----------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEK+A+AFGLI + +P+ ++KNLR+C DCH K VSK R+
Sbjct: 538 DEGKESLLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKV----YNRQ 593
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
IIM D RFHHF +G CSC +YW
Sbjct: 594 IIMRDQNRFHHFENGCCSCNEYW 616
>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Brachypodium distachyon]
Length = 674
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 140/530 (26%), Positives = 215/530 (40%), Gaps = 180/530 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP R+V +W +M+ Y++ G EE V+L++ + + GV
Sbjct: 258 VFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLYHDMCECGV------------------- 298
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
V D F + + FS L LL+H K+IH L + L
Sbjct: 299 ---------------VFDQFTFSTMLGV---------FSRLGLLEHAKQIHAS-LIQSGL 333
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D++ N +L+D Y K ++ A F ++ ++L+SWNA++AGY +
Sbjct: 334 HMDIVGNTALVDLYCKWGRMEDARHVFERMPSRNLISWNALIAGYGY------------H 381
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G A+E F R+I + PN ++ GVL AC + GF
Sbjct: 382 GMGAHAIEMFERLIAEGIAPNHVTYLGVLNAC-RFSGF---------------------- 418
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
ID +G R F++M + +P Y C+++L
Sbjct: 419 -------------------ID-----------KGKRIFQLMAQNPKTKPRAMHYACVIEL 448
Query: 361 LARAGQFDDTLNFMKKMPFEPSS------AEPC----NPDIAEHAARHLFELEP------ 404
+ G D+ + ++K PF P++ C N +A AA L +EP
Sbjct: 449 FGQQGLLDEAYSMIRKAPFTPTANMWGALLTACRIHKNIQLARLAAEQLLAMEPQKVNNY 508
Query: 405 -------LSSG------------------------------KVHSFIAGDTSHSLVHKIS 427
+SSG K H F D+ H +I
Sbjct: 509 IVLLNLYISSGRQDEALKVVNTLNGAGLCMSNACSWITVKKKDHRFFFKDSLHPKSSEIY 568
Query: 428 EKLMRLYSEIKKIGYMK--------------RIPACGHSEKLALAFGLISTSPGSPLRVI 473
KL L +K++GY+ + HSE+LA+AFG+ISTSP +PL +
Sbjct: 569 RKLHTLMEALKELGYVAEEDELLPDILPDELKTSKAYHSERLAVAFGIISTSPSTPLTIN 628
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++ R+C DCH K V++ K REI++ D RFHHF G CSCGDYW
Sbjct: 629 QSHRLCRDCHKVMKLVAQVTK----REIVLRDGSRFHHFKLGTCSCGDYW 674
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 20 ECTV-----TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFLGM- 61
EC V T++ + +L LE Q+HA LI G+ + C + M
Sbjct: 295 ECGVVFDQFTFSTMLGVFSRLGLLEHAKQIHASLIQSGLHMDIVGNTALVDLYCKWGRME 354
Query: 62 -----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
FE+MP RN+ SW +++ Y G + +F LI EG+
Sbjct: 355 DARHVFERMPSRNLISWNALIAGYGYHGMGAHAIEMFERLIAEGI 399
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 148/578 (25%), Positives = 226/578 (39%), Gaps = 174/578 (30%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP +++ SW S+M + GY +N F + E
Sbjct: 176 LFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE--------------------- 214
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
G + +L + C +++ L GK +H +K +
Sbjct: 215 ------SGRQPNEVTLLSVVSAC---------------ADMGALDEGKSLHGVVVKLG-M 252
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
V NSL++ Y K +L A F ++ + LVSWN+M+ + G+
Sbjct: 253 SGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGY---------- 302
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
E ++ F+ M + + P+ ++ +L AC + + IH Y+ R +
Sbjct: 303 --AEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 360
Query: 301 IALISIQG-LGT--------------GSFVWNSLIDMYG--RCG--AIQ----------- 330
AL+++ LG W +++ Y CG AI+
Sbjct: 361 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 420
Query: 331 ------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
EG +YFE+M + Y +EP ++ Y CMVDLL R+G+ +D
Sbjct: 421 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 480
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
+K MP EPSS C N ++ + A L L+P LS+
Sbjct: 481 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 540
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
K+H F+ GD H +I KL L +I++
Sbjct: 541 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 600
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G + HSEKLA+AFGL+ T G PL + KNLR+CGDCHS
Sbjct: 601 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 660
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K+ S EK R II+ D+ RFHHF DG CSC DYW
Sbjct: 661 AKFASLLEK----RTIIIRDSKRFHHFADGLCSCRDYW 694
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 39/207 (18%)
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
SD + + L+ Y K Y + A F ++ K LVSWN++++G + G+
Sbjct: 152 SDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYL---------- 201
Query: 242 DGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L F RM ++ QPN ++L V++ACA + GK +HG V++
Sbjct: 202 --GACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVK---------- 249
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G+ + V NSLI+MYG+ G + + + FE M ++ + MV +
Sbjct: 250 ------LGMSGKAKVVNSLINMYGKLGFL--DAASQLFEEMPVR-----SLVSWNSMVVI 296
Query: 361 LARAGQFD---DTLNFMKKMPFEPSSA 384
G + D N MK+ P A
Sbjct: 297 HNHNGYAEKGMDLFNLMKRAGINPDQA 323
>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Vitis vinifera]
Length = 703
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 176/712 (24%), Positives = 288/712 (40%), Gaps = 218/712 (30%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-------VELCAFLG 60
LL+S + +P E T+ + + NL+ G +HAHLI+ V++ + +
Sbjct: 14 FLLKSSTVGHPLEHTIQ---LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLIN 70
Query: 61 MFEK-------------MPERNVFSWTSMMGMY-------NVLGYYEEIVNLFYLLIDEG 100
++ K M +RNV SW ++M Y VL ++ ++++ Y+ +E
Sbjct: 71 LYAKCDQIMVARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEY 130
Query: 101 VY----KACSE------------------LKDHRVGKD----VYDYMISIKFEGNACVKR 134
++ +CS+ L H+ K+ +Y +K + +
Sbjct: 131 IFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEV 190
Query: 135 PVLDMF----IKCGRME--MASGEFEEKDF--------------------SNLSLLKHGK 168
P LD+F I G +E S E D S+L L+ G
Sbjct: 191 PGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGL 250
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
++H + + E D V+++++D Y KC + A F++++ K++VSW A+LA Y+
Sbjct: 251 QVHCR-MFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQN 309
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G EE AL FF M + PN + + +L +CA + GK +H +
Sbjct: 310 GCFEE------------ALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRI 357
Query: 289 LRHHIQLSTGVGIALISI----------------------------------QGLGTGSF 314
+ + VG ALI++ GLG +
Sbjct: 358 KKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREAL 417
Query: 315 V-------------WNSLIDMYGRC---GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
V + + + + C G++Q EG+ Y + K+ +EP +E Y C+V
Sbjct: 418 VVFQEMLAAKECPHYVTFVGVLSACAHLGSVQ--EGFYYLNQLMKQTGIEPGVEHYTCIV 475
Query: 359 DLLARAGQFDDTLNFMKKMPFE------PSSAEPC----NPDIAEHAARHLFELEPLSSG 408
LL +AG+ D+ NFMK P + + C N + + A + +++P G
Sbjct: 476 GLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVG 535
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
+H F++ +H ++
Sbjct: 536 TYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQ 595
Query: 426 ISEKLMRLYSEIKKIGYMKRIPACGH--------------SEKLALAFGLISTSPGSPLR 471
I EK+ L + I+ +GY+ I A H SEKLA+A+GL+ T G+P+R
Sbjct: 596 IYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIR 655
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VIKNLRMC DCHS K +SK R II+ D RFH F DG CSC DYW
Sbjct: 656 VIKNLRMCVDCHSAVKLISKVT----NRMIIVRDANRFHCFGDGGCSCADYW 703
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 200/471 (42%), Gaps = 135/471 (28%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK-FSKIKQKHLVSWNAMLAGYALG 228
IH +K LE ++ V N+LM+ Y K L ++ CK F + K+LVSWN M+ +
Sbjct: 659 IHGLVMKSGVLE-EVKVVNALMNLYGKTGDL-ISSCKLFEDLSVKNLVSWNTMIVIHLQN 716
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
G EE L +F+ ++P+ + VL C + +L + IHG +
Sbjct: 717 GLAEE------------GLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLI 764
Query: 289 LRHHIQLSTGVGIALISIQG-LG--------------TGSFVWNSLIDMYGRCG----AI 329
+ +T + AL+ + LG S W +++ Y G AI
Sbjct: 765 MFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAI 824
Query: 330 QK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ EG YFE M K Y +EP ++ Y CMVDL
Sbjct: 825 KHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDL 884
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL----- 405
+ R+G D +K+MP EPSS C + + AA+ LFELEP
Sbjct: 885 MGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNY 944
Query: 406 ------------------------------SSG--------KVHSFIAGDTSHSLVHKIS 427
+SG K+H F+ GD SH KI
Sbjct: 945 IMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQ 1004
Query: 428 EKLMRLYSEIK-KIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRV 472
+KL + ++K ++G+ R HSEK+A+AFGL+ SP P+ +
Sbjct: 1005 KKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIII 1064
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH K +S EK R II+ D+ RFHHF++G+CSC DYW
Sbjct: 1065 RKNLRICGDCHETAKAISLIEK----RRIIIRDSKRFHHFLEGSCSCRDYW 1111
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 122/528 (23%), Positives = 214/528 (40%), Gaps = 154/528 (29%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+AC+ L G V+ I F+ + V+ ++ ++ + G ++ K F+++S
Sbjct: 124 QACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSC-----HKVFNSVS 178
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+P D + +++ A+C + A F + +K ++WNAM+
Sbjct: 179 --------YP----------DFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMI 220
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GYA Q G+ AL F M ++ N +S+ VL+AC Q+ G+
Sbjct: 221 SGYA------------QVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGR 268
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGRCG 327
H Y+ R+ I+++ +G L+ + + W+S ++ G
Sbjct: 269 WAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNG 328
Query: 328 AIQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
+K +EG ++F+ M+ E+ +EP ++ Y
Sbjct: 329 FGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHY 388
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEP 404
C+VDL ARAG+ +D ++ +++MP + +A N ++ A++ + ELE
Sbjct: 389 GCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELET 448
Query: 405 LS-------------------------------------------SGKVHSFIAGDTSHS 421
+ +G+VH F GD SH
Sbjct: 449 SNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHP 508
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
++I + ++ GY K C HSEK A+AFG++S
Sbjct: 509 KYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKAD 568
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDG 515
P+R++KNLR+CGDCH + +SK REII+ D RFHHF DG
Sbjct: 569 VPIRIVKNLRVCGDCHQVSMMISKI----FNREIIVRDRNRFHHFKDG 612
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 84/221 (38%), Gaps = 64/221 (28%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------------- 52
+L S + PD TV + + Q C L E G+QVH I G
Sbjct: 105 ILSSGNGLKPDNYTVNF--LVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYA 162
Query: 53 --------------------------VELCAFLG-------MFEKMPERNVFSWTSMMGM 79
V CA G +FE MPE++ +W +M+
Sbjct: 163 ELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISG 222
Query: 80 YNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGN 129
Y +G E +NLF+L+ EG V AC++L G+ + Y+ K +
Sbjct: 223 YAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIKIT 282
Query: 130 ACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLKHG 167
+ ++D++ KCG M+ A F EEK+ S +G
Sbjct: 283 VRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNG 323
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 30/166 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFL 59
P+E VT+ + C N E G+ +H ++ GV +L +
Sbjct: 635 PNE--VTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSC 692
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVY----KACSELK 109
+FE + +N+ SW +M+ ++ G EE + F L D+ + + C ++
Sbjct: 693 KLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIG 752
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
R+ + ++ ++ F N C+ +LD++ K GR+E +S F E
Sbjct: 753 VVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLE 798
>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 161/699 (23%), Positives = 270/699 (38%), Gaps = 217/699 (31%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TYA C + +L G VHA ++ G+ FL +F+
Sbjct: 105 TYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAA 164
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD--HRV 113
E + SW S++ Y G EE + +F L+ G + K C+ D +
Sbjct: 165 EEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHI 224
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------------------------- 146
+ V+ ++ + + + ++DM+ K G +
Sbjct: 225 AEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCR 284
Query: 147 ------------------EMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKKDD 179
EM S + +F+ S+L+ GK+IH LK
Sbjct: 285 DEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHS- 343
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
D + ++L+D Y+ ++ + F + ++ +V+W +M I+G Q
Sbjct: 344 FHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSM------------ISGCVQ 391
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
E AL F I ++P+ ++S V+ ACA + + G++I +++ T +
Sbjct: 392 NELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAM 451
Query: 300 GIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQK------------- 331
G + I + Q + + V W+++I + + G +
Sbjct: 452 GNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKV 511
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
++G RY+E+MK EY + P ++ C+VDLL RAG+ D
Sbjct: 512 APNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAE 571
Query: 372 NFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------ 409
F++ F + C + + + A + +LEP SS
Sbjct: 572 AFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAG 631
Query: 410 -------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
VHSF+AGD SH + I +KL + S+I+
Sbjct: 632 ELSLASKTRDLMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIE 691
Query: 439 KIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
K+ + + C HSEK+A+AFG+I +P+RV+KNLR+C DCHS
Sbjct: 692 KLANTDNASTGSDGISSSEQNLVGC-HSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHS 750
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +S +E REII+ D RFHHF G+CSCGDYW
Sbjct: 751 TMKLISGSEN----REIILRDGIRFHHFRGGSCSCGDYW 785
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 37/218 (16%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWN 219
+ L H +H H + + + L + NSL+ Y + H ++ +++ VS+N
Sbjct: 13 TALPHVAAVHAH-IARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYN 71
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
+++ Y+ G G F ++ + + + LAAC++ +
Sbjct: 72 LLISSYSRAGL-----------PGRALETFARARAAAGLRVDRFTYAAALAACSRALDLR 120
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
GK +H A+ + GLG G F+ NSL MY CG + E R F+
Sbjct: 121 TGKAVH----------------AMTVLDGLGNGVFLSNSLASMYASCG--EMGEARRVFD 162
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
++ ++ + ++ RAG ++TL M
Sbjct: 163 AAEEHDDV-----SWNSLLSGYVRAGAREETLKVFSLM 195
>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 836
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 151/619 (24%), Positives = 248/619 (40%), Gaps = 175/619 (28%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
+TY + C +++L+ G +HA ++ L AFLG +F
Sbjct: 275 MTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALARRVFNS 334
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLF------YLLIDE----GVYKACSELKDHRVG 114
+ E+N SWT ++ G ++ + LF +++DE + CS G
Sbjct: 335 LGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQNYAATG 394
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174
+ ++ Y I + V ++ M+ +CG E AS F
Sbjct: 395 ELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLR--------------- 439
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
D + +++ +++ + A F + ++++++WN+ML+ Y GF EE
Sbjct: 440 --------DTISWTAMITAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEE- 490
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
++ + M ++P+ ++ + + ACA + KLG ++ +V +
Sbjct: 491 -----------GMKLYVLMRSKAVKPDWVTFATSIRACADLATIKLGTQVVSHVTK--FG 537
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE------------GWR------ 336
LS+ V +A NS++ MY RCG I++ W
Sbjct: 538 LSSDVSVA--------------NSIVTMYSRCGQIKEARKVFDSIHVKNLISWNAMMAAF 583
Query: 337 ------------YFEMMKKEYNMEPAMEQYCCMV-DLLARAGQFDDTLNFMKKMPFEPSS 383
Y +M++ E +P Y ++ DLL RAG D N + MPF+P++
Sbjct: 584 AQNGLGNKAIETYEDMLRTE--CKPDHISYVAVLSDLLGRAGLLDQAKNLIDGMPFKPNA 641
Query: 384 A------EPC----NPDIAEHAARHLFELEPLSSG------------------------- 408
C + +AE AA+ L EL SG
Sbjct: 642 TVWGALLGACRIHHDSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLM 701
Query: 409 ------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG 450
+VH F +TSH ++++ KL + +I+ G I +C
Sbjct: 702 KVKGIRKSPGCSWIEVDNRVHVFTVDETSHPQINEVYVKLEEMMKKIEDTGRYVSIVSCA 761
Query: 451 H------SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMI 504
H SEKLA AFGL+S P P++V KNLR+C DCH K +S RE+IM
Sbjct: 762 HRSQKYHSEKLAFAFGLLSLPPWMPIQVTKNLRVCNDCHLVIKLLSLVT----SRELIMR 817
Query: 505 DNYRFHHFVDGACSCGDYW 523
D +RFHHF DG CSC DYW
Sbjct: 818 DGFRFHHFKDGFCSCRDYW 836
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 82/358 (22%), Positives = 141/358 (39%), Gaps = 83/358 (23%)
Query: 45 HAHLIVCGVELCAFL---------GMFEKMPE--RNVFSWTSMMGMYNVLGYYEEIVNLF 93
HA++ L AF +F++MP R+ SWT+M+ Y G + F
Sbjct: 67 HANIFTWNTMLHAFFDSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTF 126
Query: 94 YLLIDEG--------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139
++ + KAC L R ++ ++I + C++ ++DM
Sbjct: 127 MSMLRDSNHDIQNCDPFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDM 186
Query: 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
+IKCG + +A E F N+ L NS++ Y++
Sbjct: 187 YIKCGAITLA-----ETVFLNIE------------------SPSLFCWNSMIYGYSQLYG 223
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
A F+++ ++ VSWN + I+ F+QYG G L F M +
Sbjct: 224 PYEALHVFTRMPERDHVSWNTL------------ISVFSQYGHGIRCLSTFVEMCNLGFK 271
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
PN ++ VL+ACA + K G +H +LR L +F+ + L
Sbjct: 272 PNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLD----------------AFLGSGL 315
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
IDMY +CG + R F + ++ + + C++ +A+ G DD L +M
Sbjct: 316 IDMYAKCGCLALAR--RVFNSLGEQNQVS-----WTCLISGVAQFGLRDDALALFNQM 366
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 41/179 (22%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML-AGYALGGFREE----- 233
L++ L + N+L+ Y+ C + A F + ++ +WN ML A + G RE
Sbjct: 35 LDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFDSGRMREAENLFD 94
Query: 234 ---------------ITGFTQYGDGETALEFFSRMIQT---DMQP-NTISLSGVLAACAQ 274
I+G+ Q G +++ F M++ D+Q + S + + AC
Sbjct: 95 EMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDPFSYTCTMKACGC 154
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ + ++H +V++ H LG + + NSL+DMY +CGAI E
Sbjct: 155 LASTRFALQLHAHVIKLH----------------LGAQTCIQNSLVDMYIKCGAITLAE 197
>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 934
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 175/706 (24%), Positives = 260/706 (36%), Gaps = 212/706 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LC-AFLGM--- 61
M T+ +T + + C NL G +H ++ G+E +C + L M
Sbjct: 249 FSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQ 308
Query: 62 ----------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
F KM ER++ SW SMM + G Y + L ++
Sbjct: 309 AGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTA 368
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS----------- 150
AC L+ ++ V+ ++I + N + ++ M+ K G M A
Sbjct: 369 LSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDE 425
Query: 151 --------GEFEEKD------------------------------FSNLSLLKHGKEIHP 172
G + K+ S LL HG IH
Sbjct: 426 VTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHA 485
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
H + E + V +SL+ YA+C L ++ F + K+ +WNA+L+ A
Sbjct: 486 H-IVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANA------ 538
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
YG GE AL+ +M + + S S A + G+++H +++H
Sbjct: 539 ------HYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHG 592
Query: 293 IQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK------ 331
+ + V A + + G WN LI R G Q+
Sbjct: 593 FESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFH 652
Query: 332 ---------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
+EG YF M ++ + +E C++DLL RA
Sbjct: 653 EMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRA 712
Query: 365 GQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE----------- 403
G+ + NF+ KMP P+ C N ++A AA LFEL+
Sbjct: 713 GKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYS 772
Query: 404 ---------------------------PLSS-----GKVHSFIAGDTSHSLVHKISEKLM 431
P S +V +F GD H +I KL
Sbjct: 773 NVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLE 832
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L I++ GYM K HSE++ALAFGLI++S GSPLR+ KNLR
Sbjct: 833 ELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLR 892
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+CGDCHS K VS+ R+II+ D YRFHHF G CSC DYW
Sbjct: 893 VCGDCHSVFKMVSQIIG----RKIILRDAYRFHHFSSGKCSCSDYW 934
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 129/316 (40%), Gaps = 96/316 (30%)
Query: 39 ELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMY 80
E QVHAH+I CG+ F+G +F+++ E N+ SWTS+M Y
Sbjct: 76 EGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGY 135
Query: 81 NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD---VYDYMISIKFEGNACVKRPVL 137
G +E+++++ L +GVY C+E V + + D M+ + VL
Sbjct: 136 AYNGCVKEVMSVYRRLRRDGVY--CNENAMATVIRSCGVLVDKMLGYQ----------VL 183
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
IK G L++ + V NSL+ + C
Sbjct: 184 GSVIKSG-----------------------------------LDTTVSVANSLISMFGNC 208
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
++ A C F +K++ +SWN++ IT G E +LE+FS+M T
Sbjct: 209 DSIEEASCVFDDMKERDTISWNSI------------ITASVHNGHCEKSLEYFSQMRYTH 256
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317
+ + I++S +L C + + G+ +HG V++ GL + V N
Sbjct: 257 AKTDYITISALLPVCGSAQNLRWGRGLHGMVVK----------------SGLESNVCVCN 300
Query: 318 SLIDMYGRCGAIQKNE 333
SL+ MY + G + E
Sbjct: 301 SLLSMYSQAGKSEDAE 316
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 115/271 (42%), Gaps = 71/271 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMPERN SW ++M + +G+Y++ + F +++ GV + Y
Sbjct: 14 VFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPS--------------SY 59
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ + + C R SG E F ++H H +K L
Sbjct: 60 VAA--------------SLVTACDR----SGCMTEGAF----------QVHAHVIKCG-L 90
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D+ V SL+ FY ++ F +I++ ++VSW +++ GYA G +E+
Sbjct: 91 ACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEV------ 144
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ + R+ + + N +++ V+ +C + LG ++ G V++
Sbjct: 145 ------MSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIK---------- 188
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
GL T V NSLI M+G C +I++
Sbjct: 189 ------SGLDTTVSVANSLISMFGNCDSIEE 213
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 142/391 (36%), Gaps = 120/391 (30%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEKMPE 67
A + + C L + LG QV +I G++ L + G +F+ M E
Sbjct: 164 ATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKE 223
Query: 68 RNVFSWTSMMGMYNVLGYYEEIVNLF-----------YLLIDEGVYKACSELKDHRVGKD 116
R+ SW S++ G+ E+ + F Y+ I + C ++ R G+
Sbjct: 224 RDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITI-SALLPVCGSAQNLRWGRG 282
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ ++ E N CV +L M+ + G+ E A F H ++
Sbjct: 283 LHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVF-------------------HKMR 323
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ D L+SWN+M+A +
Sbjct: 324 ERD-----------------------------------LISWNSMMASH----------- 337
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
G+ ALE M+QT N ++ + L+AC ++ K+ +H +V+ + +
Sbjct: 338 -VDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAFVILLGLHHN 393
Query: 297 TGVGIALISIQG-LGT--------------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+G AL+++ G G+ WN+LI G + N F ++
Sbjct: 394 LIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIG--GHADNKEPNAAIEAFNLL 451
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
++ E Y +V+LL+ DD L+
Sbjct: 452 RE----EGVPVNYITIVNLLSAFLSPDDLLD 478
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
Y+K ++ A F K+ +++ SWN ++ +GF + G + A++FF M
Sbjct: 2 YSKFGSIEHAQHVFDKMPERNEASWNNLM------------SGFVRVGWYQKAMQFFCHM 49
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGK-EIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
++ ++P++ + ++ AC + G ++H +V++ + VG +L+ G
Sbjct: 50 LEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFY----G 105
Query: 313 SFVWNSLIDM 322
+F W + +DM
Sbjct: 106 TFGWVAEVDM 115
>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 565
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 156/612 (25%), Positives = 247/612 (40%), Gaps = 178/612 (29%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+++R K N + I ++ + V +L + +F++MP+R + +W +M+ Y E
Sbjct: 16 LYERMRKKNFMSSNILINGY--VRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNE 73
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E ++LF + H +G +Y + F G+A ++ +
Sbjct: 74 EGLSLFREM--------------HGLGFSPDEYTLGSVFSGSAGLRSVSI---------- 109
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
G++IH + +K LE DL+VN+SL Y + L+
Sbjct: 110 -------------------GQQIHGYAIKYG-LELDLVVNSSLAHMYMRNGKLQDGEIVI 149
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
+ ++LV+WN ++ G A Q G ET L + M + +PN I+
Sbjct: 150 RSMPVRNLVAWNTLIMGNA------------QNGCPETVLYLYKMMKISGCRPNKITFVT 197
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGS---------- 313
VL++C+ + G++IH ++ V +LIS+ LG +
Sbjct: 198 VLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDED 257
Query: 314 -FVWNSLIDMYGRCG----AIQ------------------------------KNEGWRYF 338
+W+S+I YG G AI+ K++G F
Sbjct: 258 EVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELF 317
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN---- 388
+MM ++Y +P ++ Y C+VDLL RAG D +K MP +P CN
Sbjct: 318 DMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKN 377
Query: 389 PDIAEHAARHLFELEPLSS----------------------------------------- 407
++A+ + + E++P S
Sbjct: 378 AEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFE 437
Query: 408 --GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGH 451
G+VH F GD S S +I L L E+K GY K H
Sbjct: 438 HKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQH 497
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AF L+ G+P+R+IKNLR+C DCH KY+S REI + D RFHH
Sbjct: 498 SEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVI----MNREITLRDGSRFHH 553
Query: 512 FVDGACSCGDYW 523
F++G CSCGDYW
Sbjct: 554 FINGKCSCGDYW 565
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 33/176 (18%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
+S L L ++ KK+ + S++L+N Y + L A F ++ + L +
Sbjct: 4 YSKLGDLPSAVALYERMRKKNFMSSNILING-----YVRAGDLVSARKVFDEMPDRKLTT 58
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
WNAM+AG Q+ E L F M P+ +L V + A ++
Sbjct: 59 WNAMIAG------------LIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRS 106
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+G++IHGY +++ ++L V +SL MY R G +Q E
Sbjct: 107 VSIGQQIHGYAIKYGLELDLVVN----------------SSLAHMYMRNGKLQDGE 146
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 60/307 (19%), Positives = 126/307 (41%), Gaps = 39/307 (12%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
+PDE T+ +F L ++ +G Q+H + I G+EL +
Sbjct: 88 SPDEYTL--GSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDG 145
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+ MP RN+ +W +++ G E ++ L+ ++ G V +CS+L
Sbjct: 146 EIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDL 205
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
G+ ++ I I V ++ M+ KCG + A+ F E++ + +
Sbjct: 206 AIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMI 265
Query: 169 EIHPHHLKKDDLES--DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
+ H + D+ + + + M+ + C S +K K L ++ M+ Y
Sbjct: 266 SAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKY- 324
Query: 227 LGGFREEITGFTQYGD--GETA-LEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGK 282
GF+ + +T D G L+ +I++ ++P+ + +L+AC K ++ +
Sbjct: 325 --GFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQ 382
Query: 283 EIHGYVL 289
++ +L
Sbjct: 383 KVFKEIL 389
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 200/477 (41%), Gaps = 135/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+++H +K L ++ V +L++ Y C + A F KI + +V++NAM+
Sbjct: 137 LEEGRQLHCLAIKLG-LSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMIT 195
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA G E AL F + +++P +++ VL++CA + LGK
Sbjct: 196 GYARGSRPNE------------ALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKW 243
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
+H YV ++ V ALI + GS W+++I Y G
Sbjct: 244 MHEYVKKNGFNRFVKVDTALIDMYA-KCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHG 302
Query: 328 AIQK---------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
K EG+ YF M+ +Y + P ++ Y
Sbjct: 303 HGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHY 362
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL RAG+ ++ F+ +P P+ C N ++ + +FEL+
Sbjct: 363 GCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDD 422
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G VH F +GD HS
Sbjct: 423 SHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHS 482
Query: 422 LVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSP 466
+ K+ + L L E+K +GY+ K + HSEKLA+ FGL++T P
Sbjct: 483 VSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPP 542
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +RV+KNLR+CGDCHS K +S +R+II+ D RFHHF DG CSC DYW
Sbjct: 543 GTTIRVVKNLRVCGDCHSAAKLISLI----FDRQIILRDVQRFHHFKDGKCSCEDYW 595
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 177 KDDLESDLLVNNSLMDFYA---KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
K L SDL V ++F + ++ AH F +I Q +V +N M GYA
Sbjct: 45 KTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYA------- 97
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+ A F++++ + + P+ + +L ACA K + G+++H ++
Sbjct: 98 -----RTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIK--- 149
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
GL +V +LI+MY C + + R F+ + EP +
Sbjct: 150 -------------LGLSENVYVCPTLINMYTACN--EMDCARRVFDKI-----WEPCVVT 189
Query: 354 YCCMVDLLARAGQFDDTLNFMKKM 377
Y M+ AR + ++ L+ +++
Sbjct: 190 YNAMITGYARGSRPNEALSLFREL 213
>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
Length = 401
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 181/408 (44%), Gaps = 130/408 (31%)
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
F + G A+ F +M+ +QP++++L G+L A A + GKEIHG+++R +
Sbjct: 3 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 62
Query: 297 TGVGIALISI-QGLGTGSF--------------VWNSLIDMYGRCGAIQK---------- 331
V +L+ + G G+ ++ +W ++I+ G G ++
Sbjct: 63 GAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLE 122
Query: 332 -----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+EG Y +MM +Y ++P E Y C+VDLL R+GQ +
Sbjct: 123 TGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTE 182
Query: 369 DTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK--------- 409
+ F+K MP EP S C N ++A A L ELEP + G
Sbjct: 183 EAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFA 242
Query: 410 ----------------------------------VHSFIAGDTSH---SLVH----KISE 428
VH+F A D SH +H +I+E
Sbjct: 243 EMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITE 302
Query: 429 KLMRL-------------YSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
KL R SE +KI + R HSE+LA++FGLIST+ G+PLR+ KN
Sbjct: 303 KLRREGQYVEDTSFVLHDVSEEEKIDLLHR-----HSERLAISFGLISTASGTPLRIAKN 357
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+CGDCH TK VSK EREI++ D RFHHF G CSCGD+W
Sbjct: 358 LRVCGDCHEFTKLVSKL----FEREIVVRDANRFHHFSGGTCSCGDFW 401
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 197/485 (40%), Gaps = 134/485 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS L+ G +H H + SD V +L+ Y+KC L VA F I+ K++
Sbjct: 113 KACADLSALRTGMTVHAHSILLG-FGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDKNV 171
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WNAM++GY Q G E +E + M P++++ L+ACAQ
Sbjct: 172 VAWNAMISGY------------EQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQA 219
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLI 320
LG+E+ ++ + +S +G AL+++ W S+I
Sbjct: 220 GALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMI 279
Query: 321 DMYG---------------RCGAIQKN------------------EGWRYFEMMKKEYNM 347
YG RC N EG F MK+ Y +
Sbjct: 280 AGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGL 339
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMK-KMPFEPSSA------EPC----NPDIAEHAA 396
P +E YC MVD+ RAG+ ++ + F++ MP +P C N + A
Sbjct: 340 APRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVA 399
Query: 397 RHLFELEP--------LSS-----------------------------------GKVHSF 413
L LEP LS+ G H F
Sbjct: 400 ERLIRLEPENPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIELGGTSHLF 459
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG--------------HSEKLALAF 459
G+ SH +I + L L I GYM + HSEKLA+A+
Sbjct: 460 RMGEKSHQKTREIYQYLEELVHRISAAGYMPETESVLHELEEEEREGALRYHSEKLAVAY 519
Query: 460 GLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
GL+ S +PLRVIKNLR+C DCH K++S E REII+ D +RFHHF DG CS
Sbjct: 520 GLMMSAGSTTPLRVIKNLRICSDCHLAIKFMSAVE----NREIIVRDKHRFHHFKDGKCS 575
Query: 519 CGDYW 523
C +YW
Sbjct: 576 CLEYW 580
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 53/172 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM---------------- 61
PD ++T+ C + L+LG +V ++ +++ FLG
Sbjct: 204 PD--SMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKAR 261
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+ + ERNV +WTSM+ Y + G+ E + L++L+ +G V AC+
Sbjct: 262 QWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAG 321
Query: 110 DHRVGKDVYDYMISIKFEGNACVKR------------PVLDMFIKCGRMEMA 149
G+D + AC+KR ++DM+ + GR+E A
Sbjct: 322 LITEGRDAF-----------ACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEA 362
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 200/476 (42%), Gaps = 133/476 (27%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G ++H L K +SD+ V N L+ FY C +L A F ++ ++ LVSW++M+A
Sbjct: 100 LQTGLDLHSL-LFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIA 158
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+A GF G AL F RM + ++P+ + + V++A + + +LGK
Sbjct: 159 CFAKNGF------------GYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGK 206
Query: 283 EIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGS-FVWNSLID---MYG 324
I G++ R+ ++ + +G AL+ + +G + W +LI+ ++G
Sbjct: 207 WIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHG 266
Query: 325 RCGAIQK------------------------------NEGWRYFEMMKKEYNMEPAMEQY 354
R + +EGW FE ++ EY MEP E Y
Sbjct: 267 RSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHY 326
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
CMVDLL RAG ++ F+ MP P+S ++AE + EL+
Sbjct: 327 GCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDS 386
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G +H F+AGD +H
Sbjct: 387 YHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHP 446
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
I E L+ + +K +GY I HSEKLA+AF L+
Sbjct: 447 QFESIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDS 506
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RV+KNLR+C DCH KY S EREII+ D RFHHF G+CSC DYW
Sbjct: 507 RTIRVMKNLRICHDCHCFMKYASDV----FEREIIIRDRNRFHHFSKGSCSCRDYW 558
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 37/192 (19%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------------LCA 57
+M +PD T+ + + C +L + G+ +H+ L G + C
Sbjct: 79 AMAGVSPDH--FTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133
Query: 58 FLG----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL-----------IDEGVY 102
FL +FE+MPER++ SW+SM+ + G+ E + LF + I V
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL- 161
A S L D +GK + ++ E + ++DMF +CG +E + F+E N+
Sbjct: 194 SAISILGDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVL 253
Query: 162 --SLLKHGKEIH 171
+ L +G +H
Sbjct: 254 TWTALINGLAVH 265
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 154/603 (25%), Positives = 237/603 (39%), Gaps = 218/603 (36%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFLGM----------------FE 63
T + +F C +L NL LG Q+H+ I G VE C+ + M F+
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE-CSLVDMYAKCSADGSVDDCRKVFD 329
Query: 64 KMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDH 111
+M + +V SWT+++ G E +NLF +I +G +KAC L D
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---------- 158
RVGK V N+ V V+ MF+K RME A FE EK+
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+N+ ++ G++IH +K L +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG-LSCN 508
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+ Y+KC + A F+ ++ ++++SW +M ITGF ++G
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSM------------ITGFAKHGFA 556
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
LE F++MI+ ++PN ++ +L+AC+ V L
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHV--------------------------GL 590
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+S EGWR+F M +++ ++P ME Y CMVDLL R
Sbjct: 591 VS---------------------------EGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
Query: 364 AGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP--------L 405
AG D F+ MPF+ + N ++ + AAR + EL+P L
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Query: 406 SS-----------------------------------GKVHSFIAGDTSHSLVHKISEKL 430
S+ K+H F GDT+H H+I ++L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
Query: 431 MRLYSEIKKIGYMKRIPAC------------------GHSEKLALAFGLISTSPGSPLRV 472
RL +EIK+ GY+ HSEK+A+AFGLISTS PL++
Sbjct: 744 DRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPLKM 803
Query: 473 IKN 475
I+
Sbjct: 804 IQT 806
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 131/329 (39%), Gaps = 95/329 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+VT++ + + C + + LG VHA LI +E + L +FE
Sbjct: 62 SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121
Query: 64 KMP---ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
M +R+V SW++MM Y G + + +F ++ G+ V D Y Y
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL-----------VPND-YCY 169
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
I+ AC F+ GR+ + L+K G
Sbjct: 170 TAVIR----ACSNSD----FVGVGRVTLGF------------LMKTGH-----------F 198
Query: 181 ESDLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
ESD+ V SL+D + K + A+ F K+ + ++V+W M IT Q
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM------------ITRCMQ 246
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G A+ FF M+ + + + +LS V +ACA+++ LGK++H + +R
Sbjct: 247 MGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS-------- 298
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGA 328
G V SL+DMY +C A
Sbjct: 299 ----------GLVDDVECSLVDMYAKCSA 317
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/591 (24%), Positives = 234/591 (39%), Gaps = 175/591 (29%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFE 63
VTY + C K +L LG+QVH ++ GV ++ A +FE
Sbjct: 161 AVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFE 220
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
M R++ SWTS++ L+ G +L DH +D +
Sbjct: 221 GMQMRSMASWTSVISG----------------LVRSGQVDRARDLFDHMPERDTIAWTAM 264
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDD 179
I R L+ F ++ + EF + L L+ G E ++ +
Sbjct: 265 IDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLG 323
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ D+ V N+L+D Y+KC ++ A F + + +W A++ G A+ G
Sbjct: 324 IKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNG---------- 373
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GE A++ F RM++ P+ ++ GVL AC
Sbjct: 374 --RGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHA------------------------ 407
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
L+D +G +F M + YN+ P + Y C++D
Sbjct: 408 ------------------GLVD-----------KGREFFLSMTEAYNISPTVVHYGCLID 438
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS-- 407
+L RAG+ + L+ + KMP +P+S C N +I E AA L EL+P +S
Sbjct: 439 VLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTA 498
Query: 408 -----------------------------------------GKVHSFIAGDTSHSLVHKI 426
G +H F+A D SH + +I
Sbjct: 499 YILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEI 558
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
KL + ++++ GY+ K+ HSEKLA+ F L+++ +R+
Sbjct: 559 YSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRI 618
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLRMC DCH+ K +SK RE+I+ D RFHHF G+CSC DYW
Sbjct: 619 VKNLRMCLDCHNAIKLISKLYG----REVIVRDRTRFHHFRHGSCSCKDYW 665
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 35/163 (21%)
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V WNA+ I+G + G E + F M++ ++ VL+AC +
Sbjct: 127 VMWNAL------------ISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKG 174
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
K LG ++H VL G+ V N+L+DMY CG + + W
Sbjct: 175 KDLLLGMQVHKRVLE----------------SGVLPDQRVENALVDMYAECGDM--DAAW 216
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
FE M+ +M + ++ L R+GQ D + MP
Sbjct: 217 VLFEGMQMR-----SMASWTSVISGLVRSGQVDRARDLFDHMP 254
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 163/615 (26%), Positives = 251/615 (40%), Gaps = 189/615 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ N + V + V +E A F+ MPER+V SW +M+ Y G E
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLE--AARRYFDCMPERSVVSWNAMLSGYAQNGLAE 242
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR--PVLDMFIKCGR 145
E + LF +++ G+ D ++ I +AC R P L
Sbjct: 243 EALRLFDEMVNAGIEP------------DETTWVTVI----SACSSRGDPCLA------- 279
Query: 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
++L H K I + + V +L+D YAK L A
Sbjct: 280 -------------ASLVRTLHQKRI----------QLNCFVRTALLDMYAKFGDLDSARK 316
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTIS 264
F+ + +++V+WN+M+AGYA Q G A+E F MI + P+ ++
Sbjct: 317 LFNTMPGRNVVTWNSMIAGYA------------QNGQSAMAIELFKEMITAKKLTPDEVT 364
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLG 310
+ V++AC + +LG + ++ + I+LS A+I + Q +
Sbjct: 365 MVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA 424
Query: 311 TGSFV-WNSLIDMYG---------------RCGAIQKN------------------EGWR 336
T V +N+LI + + G I+ + EG +
Sbjct: 425 TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK 484
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEP 386
FE +K +PA++ Y CMVDLL R G+ +D M++MP EP +S
Sbjct: 485 VFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIH 539
Query: 387 CNPDIAEHAARHLFELEPLSSG-------------------------------------- 408
++ E AA LFELEP +SG
Sbjct: 540 KQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSW 599
Query: 409 -----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC-------------- 449
K+H FI D SH I + L+ L ++++ GY+ +C
Sbjct: 600 VEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD-KSCVLRDVEEEEKEEIV 658
Query: 450 -GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HSEKLA+ + L+ + G+ +RV+KNLR+C DCH+ K +SK E R II+ DN R
Sbjct: 659 GTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEG----RVIIVRDNNR 714
Query: 509 FHHFVDGACSCGDYW 523
FH F DG CSC DYW
Sbjct: 715 FHCFNDGLCSCKDYW 729
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 144/359 (40%), Gaps = 82/359 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F NVF +TSM+ Y+ L + ++V ++ +++ V D + Y
Sbjct: 56 LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMY------------EQMQGCGVRPDAFVY 103
Query: 121 MISIKFEG-----------------NACVKRPVLDMFIKCGRMEMASGEFEE-----KDF 158
I IK G +A V+ V+DM+ + G + A F+E +
Sbjct: 104 PILIKSAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKV 163
Query: 159 SNLSLLKHG-----KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213
++ + + G E L E +++ +++ YAK + L+ A F + ++
Sbjct: 164 ADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPER 223
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+VSWNAML+GYA G EE AL F M+ ++P+ + V++AC+
Sbjct: 224 SVVSWNAMLSGYAQNGLAEE------------ALRLFDEMVNAGIEPDETTWVTVISACS 271
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
L + + + IQL+ FV +L+DMY + G +
Sbjct: 272 SRGDPCLAASLVRTLHQKRIQLNC----------------FVRTALLDMYAKFGDL---- 311
Query: 334 GWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
+ +K +N P + M+ A+ GQ + K+M +A+ PD
Sbjct: 312 -----DSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI----TAKKLTPD 361
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 140/584 (23%), Positives = 234/584 (40%), Gaps = 195/584 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
++E M +R++ SW + + + G Y+ + +FY +++EG + +CS L D
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF--------- 158
G+ V+ ++I + + N V ++DM+ KC +E A F +D
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591
Query: 159 ------------------------------------SNLSLLKHGKEIHPHHLKKDDLES 182
S+L+ L+ G+++H K + S
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV-S 650
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V ++L+D YAKC ++ A F + ++ ++WN ++ GYA Q G
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYA------------QNGQ 698
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL F M+ + P+ ++ +G+L+AC+ + GKE
Sbjct: 699 GNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE------------------- 739
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
+F M +++ + P ++ CMVD+L
Sbjct: 740 ----------------------------------HFNSMYRDFGISPTVDHCACMVDILG 765
Query: 363 RAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP-------- 404
R G+FD+ +F++KM +S N + E AA LFEL+P
Sbjct: 766 RVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYIL 825
Query: 405 -----------------------------------LSSGKVHSFIAGDTSHSLVHKISEK 429
++G+VH+F++ D SH + +I K
Sbjct: 826 LSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLK 885
Query: 430 LMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
L L E+ I Y+ + HSE+LAL F LISTS +R+ KN
Sbjct: 886 LDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKN 945
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
LR+C DCH K++S +EI++ D RFHHF +GACSC
Sbjct: 946 LRICRDCHDVMKHISSITN----QEIVVRDVRRFHHFKNGACSC 985
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 132/317 (41%), Gaps = 79/317 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+ KMP+R+V SWT+++ G+ + + LF + +EG+ ++
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPN--------------EF 214
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
++ + AC LD+ GK++H K L
Sbjct: 215 TLATGLK--ACSLCMALDL---------------------------GKQMHAQAFKLG-L 244
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
DL V ++L+D YAKC +++A F + +++ V+WN +L GYA Q
Sbjct: 245 LLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA------------QR 292
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
GD L+ F M++ D++ N +L+ VL CA K K G+ IH +++
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK---------- 342
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G F+ L+DMY +CG G F+ +KK P + + ++
Sbjct: 343 ------CGYEGNEFIGCGLVDMYSKCGLAIDAIG--VFKTIKK-----PDIVVWSALITC 389
Query: 361 LARAGQFDDTLNFMKKM 377
L + GQ ++++ M
Sbjct: 390 LDQQGQSEESIKLFHLM 406
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 93/441 (21%), Positives = 167/441 (37%), Gaps = 118/441 (26%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E T+ L + C L+LG Q+HA G+ L F+G
Sbjct: 211 PNEFTLATGL--KACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS 268
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSELK 109
MF MPE+N +W ++ Y G ++ LF +++ V K C+ K
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------- 155
+ + G+ ++ +I +EGN + ++DM+ KCG A G F+
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388
Query: 156 ------------KDF----------------------SNLSLLKHGKEIHPHHLKKDDLE 181
K F +N L++G+ IH + K E
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC-VWKYGFE 447
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D+ V+N+L+ Y K + + + + L+SWNA L+G G +
Sbjct: 448 TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR-------- 499
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
L F M++ PN + +L +C+ + G+++H +++++
Sbjct: 500 ----PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ--------- 546
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVD 359
L +FV +LIDMY +C Y E +N + + ++
Sbjct: 547 -------LDDNNFVCTALIDMYAKC---------MYLEDADVAFNRLSVRDLFTWTVIIT 590
Query: 360 LLARAGQFDDTLNFMKKMPFE 380
A+ Q + LN+ ++M E
Sbjct: 591 NYAQTNQGEKALNYFRQMQQE 611
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 28/154 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
KD + D + SL++ YAKCRY A +K+ + +VSW A++ G GF +
Sbjct: 140 KDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFAND--- 196
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
++ F M + PN +L+ L AC+ LGK++H +
Sbjct: 197 ---------SIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFK------ 241
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
GL FV ++L+D+Y +CG I+
Sbjct: 242 ----------LGLLLDLFVGSALVDLYAKCGEIE 265
>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 179/703 (25%), Positives = 265/703 (37%), Gaps = 212/703 (30%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LC-AFLGM------ 61
M T+P +T + + C +L+ G +H + G+E +C + L M
Sbjct: 443 MRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGS 502
Query: 62 -------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKA 104
F MP R++ SW SMM + G Y + L ++ A
Sbjct: 503 SEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSA 562
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS-------------- 150
C L+ ++ V+ ++I N + ++ M+ K G M+ A
Sbjct: 563 CYNLEKLKI---VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTW 619
Query: 151 -----GEFEEKD----------------FSNL--------------SLLKHGKEIHPHHL 175
G ++KD SN LLKHG IH H +
Sbjct: 620 NALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAH-I 678
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
E D V +SL+ YA+C L + F + K+ +WNA+ + A
Sbjct: 679 VVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANA--------- 729
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
YG GE AL+F +RM + + S S LA + G+++H ++++ +L
Sbjct: 730 ---HYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFEL 786
Query: 296 STGVGIALISIQG-LGTGSFV--------------WNSLIDMYGRCGAIQK--------- 331
V A + + G G V WN LI R G ++
Sbjct: 787 DEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEML 846
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
+EG YF M E+ + A+E C++DLL R+G+
Sbjct: 847 DLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRL 906
Query: 368 DDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFEL--------------- 402
+ F+ KMP P S C N ++ AA LFEL
Sbjct: 907 AEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVC 966
Query: 403 -----------------------EPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLY 434
+P S KV +F GD H +I KL L
Sbjct: 967 ASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELR 1026
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
++ G+M K HSE++ALAFGLI+++ GSPLR+ KNLR+CG
Sbjct: 1027 KMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCG 1086
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K VSK R+I++ D+YRFHHF G CSC DYW
Sbjct: 1087 DCHSVFKLVSKIVG----RKIVVRDSYRFHHFHGGKCSCSDYW 1125
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 37/227 (16%)
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
F +K FS +S GK +H +K D ++ + N+L++ Y+K +K A F K+
Sbjct: 151 RFLQKGFSEISEGNVGKALHALCVK-DVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMY 209
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ SWN M I+GF + G A++FF M + + P++ ++ ++ A
Sbjct: 210 DRNDASWNNM------------ISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTA 257
Query: 272 CAQVKGFKLG-KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
C + G ++IHGYV++ GL + FV SL+ YG G++
Sbjct: 258 CDRSGCMTEGARQIHGYVVK----------------CGLMSNVFVGTSLLHFYGTHGSV- 300
Query: 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+E + FE ++ EP + + ++ A G + LN + +
Sbjct: 301 -SEANKLFEEIE-----EPNIVSWTSLMVCYADNGHTKEVLNIYRHL 341
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 121/309 (39%), Gaps = 89/309 (28%)
Query: 43 QVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMYNVLG 84
Q+H +++ CG+ F+G +FE++ E N+ SWTS+M Y G
Sbjct: 270 QIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNG 329
Query: 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144
+ +E++N++ L + G C + + CG
Sbjct: 330 HTKEVLNIYRHL----------------------------RHNGLICTGNTMATVIRTCG 361
Query: 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204
F +K G +I +K S + V NSL+ + ++ A
Sbjct: 362 M-------FGDKTM--------GYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEAS 406
Query: 205 CKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
F+ ++++ +SWN+++ A G EE +L F M +T + + I+
Sbjct: 407 RVFNNMQERDTISWNSIITASAHNGRFEE------------SLGHFFWMRRTHPKTDYIT 454
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324
+S +L AC + K G+ +HG LI+ GL + V NSL+ MY
Sbjct: 455 ISALLPACGSAQHLKWGRGLHG----------------LITKSGLESNVCVCNSLLSMYA 498
Query: 325 RCGAIQKNE 333
+ G+ + E
Sbjct: 499 QAGSSEDAE 507
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/312 (21%), Positives = 126/312 (40%), Gaps = 79/312 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KM +RN SW +M+ + +G+Y + + F + + GV + Y
Sbjct: 204 VFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPS--------------SY 249
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+I+ M C R SG E ++IH + + K L
Sbjct: 250 VIA--------------SMVTACDR----SGCMTEG----------ARQIHGY-VVKCGL 280
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S++ V SL+ FY + A+ F +I++ ++VSW +++ YA G +E+
Sbjct: 281 MSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEV------ 334
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
L + + + +++ V+ C +G +I G V++
Sbjct: 335 ------LNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIK---------- 378
Query: 301 IALISIQGLGTGSF-VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
GL T S V NSLI M+G +++ E R F M++ + + ++
Sbjct: 379 ------SGLDTSSVSVANSLISMFGNYDSVE--EASRVFNNMQERDTI-----SWNSIIT 425
Query: 360 LLARAGQFDDTL 371
A G+F+++L
Sbjct: 426 ASAHNGRFEESL 437
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 155/614 (25%), Positives = 248/614 (40%), Gaps = 181/614 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MP+R+ +WT+M + GY D ++V++
Sbjct: 214 LFDEMPKRDELTWTTM-----ITGYVRN--------------------DDLNGAREVFEA 248
Query: 121 MI-SIKFEGNACVKRPV-----LDMFIKCGRMEMASGEFEEKDFS-------NLSLLKHG 167
M+ ++ NA + V + C +M +F++ ++ N+ + G
Sbjct: 249 MVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMG 308
Query: 168 KEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
K++H + LK ++L + L V+N+L+ Y K + A F + +++++WNA+L+
Sbjct: 309 KQMHAYILK-NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367
Query: 224 GYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
GY G EE I+G Q G G+ L+ F +M +P +
Sbjct: 368 GYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFA 427
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSFV--- 315
+G L AC+ + + G+++H ++ + S VG A+IS+ FV
Sbjct: 428 FAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP 487
Query: 316 ------WNSLIDMYGRCG----AIQ-----------------------------KNEGWR 336
WNS+I G+ G AI+ +G
Sbjct: 488 SVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRH 547
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC--- 387
YF M + Y + P + Y MVDL RAG F + MP +P + C
Sbjct: 548 YFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIH 607
Query: 388 -NPDIAEHAARHLFELEPLSSG-------------------------------------- 408
N D+ AA LF+L P + G
Sbjct: 608 GNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSW 667
Query: 409 -----KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPAC 449
KVH F+ D H V + L +L E+KK+GY+ K
Sbjct: 668 IEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALS 727
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+ FG++ P + +RV KN+R+CGDCH+ K++SK + REII+ D RF
Sbjct: 728 THSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVAR----REIIVRDRKRF 783
Query: 510 HHFVDGACSCGDYW 523
HHF +G CSC DYW
Sbjct: 784 HHFKNGDCSCRDYW 797
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 98/444 (22%), Positives = 169/444 (38%), Gaps = 112/444 (25%)
Query: 25 YALIFQRCPKLN--NLELGIQVHAHLIVCGVE-----LCAFLGM-------------FEK 64
YA Q C + + L VHAH+I G + L L M FE+
Sbjct: 14 YAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEE 73
Query: 65 MPERNVFSWTSMMGMYNVLGYYE---EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYM 121
+P + + T+++ Y LG E EI N L + + V+ Y+ M
Sbjct: 74 IPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVF---------------YNAM 118
Query: 122 IS-IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL----------KHGKEI 170
I+ G+ L++F M +F DF+ S+L + ++
Sbjct: 119 ITGYAHNGDG---HSALELF-----RAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQM 170
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAK--------CRYLKVAHCKFSKIKQKHLVSWNAML 222
H +K V N+L+ Y K C + A F ++ ++ ++W M+
Sbjct: 171 HCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMI 230
Query: 223 AGYA----LGGFREE---------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
GY L G RE I+G+ G + AL +M +Q + I
Sbjct: 231 TGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDI 290
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ----LSTGVGIALISIQGLGT-------- 311
+ + +++ACA V F++GK++H Y+L++ + V ALI++
Sbjct: 291 TYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350
Query: 312 -------GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
WN+++ Y G ++ E +FE M + + M+ LA+
Sbjct: 351 FYAMPVRNIITWNAILSGYVNAGRME--EAKSFFEEMPVK-----NLLTLTVMISGLAQN 403
Query: 365 GQFDDTLNFMKKMPFEPSSAEPCN 388
G D+ L K+M + EPC+
Sbjct: 404 GFGDEGLKLFKQMRLD--GFEPCD 425
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 117/308 (37%), Gaps = 58/308 (18%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY-ALGG----------------- 229
N L++ Y K + A F +I ++ ++ Y ALG
Sbjct: 52 NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA--------------- 271
+ ITG+ GDG +ALE F M + D +P+ + + VL+A
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171
Query: 272 CAQVKGFK--LGKEIHGYVLRHHIQLSTGVGI---ALISIQGL-----GTGSFVWNSLID 321
CA VK + + +L +++ ++ +GI A++S + L W ++I
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMIT 231
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
Y R + N FE M +E + M+ G F + L +KM F
Sbjct: 232 GYVRNDDL--NGAREVFEAM-----VENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG 284
Query: 382 SSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAG---DTSHSLVHKISEKLMRLYSEIK 438
+ A ++ + ++H++I + +HS +S L+ LY +
Sbjct: 285 IQFDDITYTTIISACANVGSFQ--MGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNN 342
Query: 439 KIGYMKRI 446
K+ ++I
Sbjct: 343 KVDEARKI 350
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 18/112 (16%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L + M L + C +A C L LE G Q+HA L+ G E +G
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102
+F MP ++ SW SM+ G+ + + LF ++ EGV+
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVF 523
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 154/598 (25%), Positives = 240/598 (40%), Gaps = 199/598 (33%)
Query: 53 VELCAFLGM-------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---- 101
+++ A LGM F +M R+ SWT+M+ Y G+ ++ + ++ L+ V
Sbjct: 338 IQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDD 397
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE- 154
AC+ L VG +++ S F V +L+M+ K R++ A F+
Sbjct: 398 ITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKC 457
Query: 155 --EKDFSNLS--------------------------------------------LLKHGK 168
EKD + S L+ GK
Sbjct: 458 MPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGK 517
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
EIH H L+ + + + N+L+D Y KC A +F K +VSWN M+AG
Sbjct: 518 EIHAHVLRCG-IAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG---- 572
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
F +G+GETAL FF++M++ P+ ++ +L AC+
Sbjct: 573 --------FVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACS--------------- 609
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
R G + +EGW F M +Y++
Sbjct: 610 ------------------------------------RGGMV--SEGWELFHSMTDKYSIV 631
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARH 398
P ++ Y CMVDLL+R GQ + NF+ +MP P +A C + ++ E AA++
Sbjct: 632 PNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKY 691
Query: 399 LFELEPLSSG-------------------------------------------KVHSFIA 415
+ ELEP +G VH+F+
Sbjct: 692 VLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLT 751
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIG------------YMKRIPACGHSEKLALAFGLIS 463
D SH + +I+ L +Y +K G +K CGHSE+LA+AFGLI+
Sbjct: 752 DDESHPQIREINTVLEGIYERMKASGCAPVESHSPEDKVLKDDIFCGHSERLAVAFGLIN 811
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
T+PG+ + V KN C CH K +S + R+II+ D+ + HHF DG+CSCGD
Sbjct: 812 TTPGTSISVTKNQYTCQSCHRILKMISYIVR----RDIIVRDSKQVHHFKDGSCSCGD 865
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 130/328 (39%), Gaps = 92/328 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAH------------------LIVCGVELCAFL 59
PDE Y +F+ C +E G++ AH ++V E
Sbjct: 92 PDE--DAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAW 149
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F KMPER+VFSW M+G Y G EE ++L++ ++ GV DVY
Sbjct: 150 RVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP------------DVYT 197
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ CV R CG + + G+E+H H L+
Sbjct: 198 F---------PCVLR-------SCG---------------GVPDWRMGREVHAHVLRFGF 226
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E ++ V N+LM YAKC + A F + +SWNAM+AG+ +
Sbjct: 227 AE-EVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGH------------FE 273
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G+ LE F M+Q ++QPN ++++ V A + KE+HG ++
Sbjct: 274 NGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVK--------- 324
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCG 327
+G T NSLI MY G
Sbjct: 325 -------RGFATDVAFCNSLIQMYASLG 345
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 28/123 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F+K+ ++ + SWN M+ GY G EE AL+ + RM+ ++P+ +
Sbjct: 152 FAKMPERDVFSWNVMVGGYGKAGLLEE------------ALDLYHRMMWAGVRPDVYTFP 199
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
VL +C V +++G+E+H +VLR G V N+L+ MY +C
Sbjct: 200 CVLRSCGGVPDWRMGREVHAHVLRF----------------GFAEEVDVLNALMTMYAKC 243
Query: 327 GAI 329
G +
Sbjct: 244 GDV 246
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 202/491 (41%), Gaps = 140/491 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K L L + K++H + K DL + N+L+ Y++ L +A F ++
Sbjct: 96 FALKSCGRLKLTQQAKQLHGF-INKMGFGFDLYIQNALIHMYSEIGELVIARQVFDRMSH 154
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
+ +VSW +M+AG F + A++ F RM++ + N ++ VL C
Sbjct: 155 RDVVSWTSMIAG------------FVNHHLTVEAIQLFQRMLEVGVDVNEATVISVLRGC 202
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG---------------LGTGSFVWN 317
A +G+++HG V I V ALI + L FVW
Sbjct: 203 ADSGALSVGRKVHGIVKEKGIDFKANVCTALIHMYSKCGCLESAREVFDDVLDRDVFVWT 262
Query: 318 SLI-----------------------------------DMYGRCGAIQKNEGWRYFEMMK 342
++I Y G ++ EG+ +F ++
Sbjct: 263 AMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRNAGLVR--EGYMFFNDVQ 320
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIA 392
K Y+M+P ++ + CMVDLLA+ G ++ +F+ MP +P + + + A
Sbjct: 321 KRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWACKVHADTERA 380
Query: 393 EHAARHLFELEPLSS--------------------------------------------- 407
E +HL EL+ +S+
Sbjct: 381 ERLMKHL-ELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVKPPGSSRIEV 439
Query: 408 -GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
G VH F+ GD H KI KL ++ +++K GY K I HS
Sbjct: 440 DGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEEKAIQLLHHS 499
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLALA+GLI T PGS +R++KNLR C DCH K +SK +R+II+ D RFHHF
Sbjct: 500 EKLALAYGLIRTCPGSKIRIVKNLRSCEDCHEFMKLISKV----YQRDIIVRDRIRFHHF 555
Query: 513 VDGACSCGDYW 523
+G CSC DYW
Sbjct: 556 KNGDCSCKDYW 566
>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 206/473 (43%), Gaps = 136/473 (28%)
Query: 170 IHPHHL----KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
+ PH L K D+ V ++++D YAKC L A F ++ ++++VSW+A++ GY
Sbjct: 143 LAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIGGY 202
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
A G +AL F ++ +Q N ++S ++ CA F+LG ++H
Sbjct: 203 ADAGMHP------------SALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVH 250
Query: 286 GYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGRCG--- 327
++ + S VG +L+S+ GL ++ +WN+++ + G
Sbjct: 251 ARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTS 310
Query: 328 -AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
A ++ +EG RYF +MK EY +EP +E Y M
Sbjct: 311 TAFERFTKMQHAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLMK-EYRIEPEVEHYAAM 369
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSS 407
VDLL R G+ + L+ ++ MP EP + C + D A AA+ LFE SS
Sbjct: 370 VDLLGRVGRITEALDLIESMPMEPPDSVWGALLMACRMFKDADTAAIAAKRLFETGSRSS 429
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G +VH+F++ H +
Sbjct: 430 GAHMLLSSTYAAAGRHVDAALARKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRHPRSN 489
Query: 425 KISEKLMRLYSEIKKIGYMKRIPA----------CG----HSEKLALAFGLISTSPGSPL 470
+I L ++ ++ GY+ A C HSE+LA+A GL+ G P+
Sbjct: 490 EIYNVLEKVGEKMAVAGYVADTSAVVKDVDRDEKCASLGYHSERLAIALGLLIVPEGVPI 549
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR+C DCH+ KY+SK R +++ DN RFH F DG CSCGD+W
Sbjct: 550 RVMKNLRVCDDCHNAVKYLSKCTG----RVVVLRDNRRFHRFEDGLCSCGDFW 598
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++MPERNV SW++++G Y G + + +F ++E V + C+
Sbjct: 183 VFDEMPERNVVSWSALIGGYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATL 242
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+G V+ I + + V ++ ++ KCG ++ A F NL +
Sbjct: 243 FELGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGI 295
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 134/494 (27%), Positives = 201/494 (40%), Gaps = 139/494 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
++ GK+IH H LK +D N+L+ Y + L+ A F + Q+ +VSW +++
Sbjct: 136 IEEGKQIHAHVLKFG-FGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLIT 194
Query: 224 GYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264
GY+ GF ++ I + Q A F RM ++ +
Sbjct: 195 GYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFV 254
Query: 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGL 309
+ +L+AC + + GK IHGY+ + I+L + + +I + +
Sbjct: 255 AASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELP 314
Query: 310 GTGSFVWNSLID---MYGRCGAIQK------------------------------NEGWR 336
G WN +I M+G+ A + EG
Sbjct: 315 QKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKH 374
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC--- 387
YF+ M + ++P ME + CMVDLL RAG ++ + +MP P + C
Sbjct: 375 YFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIH 434
Query: 388 -NPDIAEHAARHLFELEPLSSGK------------------------------------- 409
N ++ E + + ELEP +SG+
Sbjct: 435 GNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSM 494
Query: 410 ------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPAC 449
V FIAG +H +I KL + I+ IGY+ K P
Sbjct: 495 IESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLY 554
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+AFGL+ T PG LR+ KNLR+C DCH +K +SK +REII+ D RF
Sbjct: 555 YHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKV----YDREIIIRDRNRF 610
Query: 510 HHFVDGACSCGDYW 523
HHF G CSC DYW
Sbjct: 611 HHFRMGGCSCKDYW 624
>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Glycine max]
Length = 1033
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/434 (28%), Positives = 193/434 (44%), Gaps = 140/434 (32%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
++++ L+ G E+H ++ LE++++V ++L+D YAKC + A F + +++ SW
Sbjct: 671 ASVATLERGMEVHACAIRAC-LEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 729
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N+M++GYA ++G G AL+ F++M Q P+ ++ GVL+AC+ V
Sbjct: 730 NSMISGYA------------RHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHV--- 774
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
L+D EG+ +F
Sbjct: 775 ---------------------------------------GLVD-----------EGFEHF 784
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS------------AEP 386
+ M + Y + P +E + CMVDLL RAG F+K MP P++ A
Sbjct: 785 KSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANS 844
Query: 387 CNPDIAEHAARHLFELEPLSS-------------GK------------------------ 409
N ++ AA+ L ELEPL++ GK
Sbjct: 845 RNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSW 904
Query: 410 ------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------AC 449
VH F+AGD +H KI +KL + ++++ +GY+
Sbjct: 905 VTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLS 964
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+AF L S P+R+IKNLR+CGDCH+ KY+S R+II+ D+ RF
Sbjct: 965 YHSEKLAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVN----RQIILRDSNRF 1019
Query: 510 HHFVDGACSCGDYW 523
HHF G CSC DYW
Sbjct: 1020 HHFDGGICSCQDYW 1033
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 157 DFSNLSLLKH-GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
+FSNL K G+E+H + ++ ++ +L+ N+L++ YAKC + A F + K
Sbjct: 362 EFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDT 421
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+G E A+ F M + M P+ S+ L++CA +
Sbjct: 422 VSWNSI------------ISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASL 469
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
LG++IHG ++ + L V AL+++
Sbjct: 470 GWIMLGQQIHGEGIKCGLDLDVSVSNALLTL 500
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 33/214 (15%)
Query: 168 KEIHPHHLK--KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
++ H HL+ K L SD+ N+L++ + + L A F ++ QK+LVSW+ +++GY
Sbjct: 56 EDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGY 115
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--KGFKLGKE 283
A G +E A F +I + PN ++ L AC ++ KLG E
Sbjct: 116 AQNGMPDE------------ACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGME 163
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
IHG + + + L+S+ + S WNS+I +Y R G
Sbjct: 164 IHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRG 223
Query: 328 -AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
AI + + + E N P +C +V +
Sbjct: 224 DAISAFKLFSSMQREATELNCRPNEYTFCSLVTV 257
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 84/426 (19%), Positives = 157/426 (36%), Gaps = 126/426 (29%)
Query: 24 TYALIFQRCPKLNNLE----LGIQVHAHLIVCG-VELCAFLG------------------ 60
+YA++ + +NL+ G +VHA+LI V++ +G
Sbjct: 352 SYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARS 411
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MP ++ SW S++ + +EE V F+ + G
Sbjct: 412 IFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNG-------------------- 451
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M+ KF V+ C ++L + G++IH +K L
Sbjct: 452 MVPSKF--------SVISTLSSC---------------ASLGWIMLGQQIHGEGIKCG-L 487
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V+N+L+ YA+ ++ F + + VSWN+ + A T
Sbjct: 488 DLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALA-----------TSE 536
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+++F M+Q +PN ++ +L+A + + +LG++IH +L+H + +
Sbjct: 537 ASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIE 596
Query: 301 IALISIQGL----------------GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
L++ G WN++I Y G + K G + M K +
Sbjct: 597 NTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQ 656
Query: 345 Y-----------------NMEPAMEQYCC---------------MVDLLARAGQFDDTLN 372
+E ME + C +VD+ A+ G+ D
Sbjct: 657 RLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASR 716
Query: 373 FMKKMP 378
F + MP
Sbjct: 717 FFELMP 722
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 25/242 (10%)
Query: 61 MFEKMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F +M ER + SW +M+ Y G + + L +L++ +G V AC+ +
Sbjct: 615 IFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVA 674
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL---SLLKH 166
G +V+ I E V ++DM+ KCG+++ AS FE N+ + +
Sbjct: 675 TLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMIS 734
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G H H K L + + + L D L C + + + +M Y
Sbjct: 735 GYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSA--CSHVGLVDEGFEHFKSMGEVYE 792
Query: 227 LGGFREEITGFT----QYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC--AQVKGFKL 280
L E + + GD + EF M M PN + +L AC A + +L
Sbjct: 793 LAPRIEHFSCMVDLLGRAGDVKKLEEFIKTM---PMNPNALIWRTILGACCRANSRNTEL 849
Query: 281 GK 282
G+
Sbjct: 850 GR 851
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 32/159 (20%)
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
++K DL V ++L+ +A+ + A F ++ ++ V+ N ++ G A
Sbjct: 276 IEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLA-------- 327
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK----EIHGYVLR 290
+ GE A + F M + ++ N S + +L+A + K GK E+H Y++R
Sbjct: 328 ----RQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIR 382
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ AL+ + L + N+L+++Y +C AI
Sbjct: 383 N----------ALVDVWIL-----IGNALVNLYAKCNAI 406
>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
Length = 668
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 159/607 (26%), Positives = 246/607 (40%), Gaps = 178/607 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKM 65
T+ + C K+ GIQVH ++ G+E F+ +FE M
Sbjct: 133 TFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGM 192
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-------------GVYKACSELKDHR 112
ERNV SWTS++ Y +E V+LF+ ++++ G A L D
Sbjct: 193 SERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDEC 252
Query: 113 VGKDV--YDYMIS-IKFEGNACVKRPVLDMFIKCG----RMEMASGEFEEKDFSNLSLLK 165
V +++ Y+ ++S +G A +LD ++ G R+ M S +L K
Sbjct: 253 VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGK 312
Query: 166 --HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
HG +H + ++K+ + D+ +N +L+D +A+C + A F+K+ ++ + +W A +
Sbjct: 313 VCHGYWVHTY-IEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIG 371
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
A+ G+GE A F++M+ ++P+ + VL AC+
Sbjct: 372 TMAM------------EGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS---------- 409
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
HG Q +G F +M+
Sbjct: 410 -HGG------------------------------------------QVEQGLHIFSLME- 425
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAE 393
++ + P +E Y CMVDLL RAG + + +K MP EP+ C N ++A
Sbjct: 426 DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMAT 485
Query: 394 HAARHLFELEP-------------LSSGK------------------------------V 410
+AA + EL P S+GK +
Sbjct: 486 YAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVI 545
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F +GD SH + I+ L + G++ K HSEKLA
Sbjct: 546 HEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLA 605
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGLI+T P+RV+KNLRMC DCHS K S REII+ DN RFH F G
Sbjct: 606 IAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASII----YNREIIVRDNNRFHFFRQGL 661
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 662 CSCCDYW 668
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G++ G G A+ + RM+ + PN + VL+ C ++ F G ++HG V++
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK--- 159
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
GL F+ N LI Y CG + + G + FE M +
Sbjct: 160 -------------MGLEEDVFIQNCLIHFYAECGHM--DHGHKVFEGMSE 194
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 158/634 (24%), Positives = 245/634 (38%), Gaps = 224/634 (35%)
Query: 38 LELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGM 79
L LG ++H + I G+E +G +F KMP R V +W M+G
Sbjct: 238 LALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGG 297
Query: 80 Y----------------NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
Y V G+ E+V LL AC++ + G+ V+ Y++
Sbjct: 298 YALNERPVDAFDCFMQMRVDGFQVEVVTAINLL------TACAQTESSLFGRSVHAYVVR 351
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKD----------------------- 157
F + ++ +L+M+ K G++E + G+ +K
Sbjct: 352 RHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIAL 411
Query: 158 ----------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195
F L ++ K++H + +K +S L++N ++M YA
Sbjct: 412 FLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMN-AVMHMYA 470
Query: 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255
+C + + F K+ K ++SWN ++ GYA+ +G G+ ALE F M
Sbjct: 471 RCGNIVASREIFDKMPGKDVISWNTIIIGYAI------------HGQGKIALEMFDEMKC 518
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ M+PN + VL AC S+ GL
Sbjct: 519 SGMEPNESTFVSVLTAC--------------------------------SVSGL------ 540
Query: 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+ EGW+ F M++EY M P +E Y CM DLL RAG+ + L F++
Sbjct: 541 ---------------EAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIE 585
Query: 376 KMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG----------------- 408
MP P+S + DIAE+AA +F+LE ++G
Sbjct: 586 NMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWED 645
Query: 409 --------------------------KVHSFIAGDTSHSL---VHKISEKLMRLYSE--- 436
K SF+ GD SH +H+ S+ L R E
Sbjct: 646 VERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFSDILSRNIGEDLD 705
Query: 437 -------IKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
+ HS +LA+AFGLIS+ GSP+ V KN+R+C CH K +
Sbjct: 706 SSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAGSPVLVKKNVRVCNHCHHALKLI 765
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK R+I++ D +H F DG+C CGDYW
Sbjct: 766 SKYSG----RKIVVGDTKIYHIFSDGSCCCGDYW 795
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L G+ H +K L +D+ NSL+ YAK + A F + + +VSWN M+
Sbjct: 136 LGEGRAAHAAVIKLG-LGADVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVD 194
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGK 282
GY G G AL F M + +++ + LAAC LG+
Sbjct: 195 GYVSNGM------------GALALACFREMNDALQVGHDSVGVIAALAACCLESALALGR 242
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
EIHGY +RH ++ VG SL+DMY +CG +
Sbjct: 243 EIHGYAIRHGLEQDVKVG----------------TSLVDMYCKCGNV 273
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 135/529 (25%), Positives = 224/529 (42%), Gaps = 153/529 (28%)
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
+G+ + ++ + + V+ +L+M+ CG + A F+E
Sbjct: 79 LGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDE----------------- 121
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL-GGFR 231
+ DL NS+++ YAK + A F ++ +++++SW+ ++ GY + G ++
Sbjct: 122 ------SVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYK 175
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E + F + + F S PN ++S VL+AC ++ + GK +H Y+ ++
Sbjct: 176 EALDLFREMQLPKPNEVFVS--------PNKFTMSTVLSACGRLGALEQGKWVHSYIDKY 227
Query: 292 HIQLSTGVGIALISIQG----LGTGSFVWNSL---------------IDMYG---RCGAI 329
+++ +G ALI + L V+++L + MYG C +
Sbjct: 228 GVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQV 287
Query: 330 QK----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
N+G YF+MM +E+ + P+++ Y CMVDL
Sbjct: 288 FSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLY 347
Query: 362 ARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHAARHLFELEPLSSGK-- 409
R+G + +F+ MP EP S DI E A + L EL+P++SG
Sbjct: 348 GRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYV 407
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
VH F+ GD S +I
Sbjct: 408 LLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYA 467
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L + +++ GY+ K + HSEKLA+AF L+ T PG+P+R+IK
Sbjct: 468 MLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIK 527
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH K +SK REI++ D RFHHF DG+CSC D+W
Sbjct: 528 NLRICGDCHLVMKMISKL----FSREIVVRDCNRFHHFSDGSCSCRDFW 572
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/577 (24%), Positives = 228/577 (39%), Gaps = 177/577 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
TY + C +L ++LG + H ++ G ++F +++ Y+
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFG-------------SDLFVINALIQFYHNC 159
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G + ++F D +DV + I I N + D+ +
Sbjct: 160 GSFGCACDVF----------------DESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEM 203
Query: 144 GRME-MASGEFEEKDF----SNLSLLKHGKEIHPH--HLKKDDLESDLLVNNSLMDFYAK 196
+++ + E + L L+ GK +H + L K ++ DL++ +L+D YAK
Sbjct: 204 TKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYAK 263
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
C + +A F +++ +++ +WNA++ G A+ +G GE A+ F +M
Sbjct: 264 CGSIDLALQVFRRMRVRNVFTWNALIGGLAM------------HGHGEDAISLFDQMEHD 311
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316
+ P+ ++ +L AC+
Sbjct: 312 KLMPDDVTFIALLCACSHA----------------------------------------- 330
Query: 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
L+D EG F+ MK ++ +EP ME Y C+VDLL RA + DD L F++
Sbjct: 331 -GLVD-----------EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN 378
Query: 377 MPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSGK----------------- 409
MP + +S C D+AE R + ELEP S G+
Sbjct: 379 MPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHA 438
Query: 410 --------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
+H F+AGD SH +I + + + G
Sbjct: 439 LKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDG-- 496
Query: 444 KRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
+P HSEKLA+A GLIST GSP+R++KNLR+C DCHS
Sbjct: 497 GHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFL 556
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K SK REI+ D RFHHF +G+CSC D+W
Sbjct: 557 KVTSKV----YNREIVARDRSRFHHFKEGSCSCMDFW 589
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I G+ + + A+ + M++ + + + VLAACA++ KLG+ H VL++
Sbjct: 83 IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN-- 140
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
G G+ FV N+LI Y CG+
Sbjct: 141 --------------GFGSDLFVINALIQFYHNCGS 161
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 23/105 (21%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL-------IVCGVEL------- 55
+ +D PDE VT + C +L NLE G +H++ I C + L
Sbjct: 203 MTKLDNLRPDE--VTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDM 260
Query: 56 ---CA----FLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
C L +F +M RNVF+W +++G + G+ E+ ++LF
Sbjct: 261 YAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLF 305
>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 938
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 166/705 (23%), Positives = 269/705 (38%), Gaps = 212/705 (30%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LCAFLG-------- 60
M L + + T +++ C ++ L+ G VH + G+E LC L
Sbjct: 252 MRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGR 311
Query: 61 ------MFEKMPERNVFSWTSMMGMYN-------VLGYYEEIV----NLFYLLIDEGVYK 103
+F +MPER++ SW SM+ Y L + E++ + Y+ +
Sbjct: 312 SKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSAL-A 370
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------- 155
AC + + GK ++ +++ + + + ++ + KC +M A F+
Sbjct: 371 ACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVT 430
Query: 156 -----KDFSNLS-------------------------------------LLKHGKEIHPH 173
F+N + L+K+G IH H
Sbjct: 431 WNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAH 490
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ + D V +SL+ YAKC L + F ++ K WNA++A A
Sbjct: 491 TVVTG-FDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANA------- 542
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+YG GE AL+ RM ++ + + S L+ A + + G+++HG ++
Sbjct: 543 -----RYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGF 597
Query: 294 QLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK------- 331
+L + A + + G WN+LI + R G K
Sbjct: 598 ELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHD 657
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG Y+ M Y ++P +E CM+DLL R+G
Sbjct: 658 MLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSG 717
Query: 366 QFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSS-------- 407
+ + F+ +MP P S C N D+ AA+HL EL+P
Sbjct: 718 RLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSN 777
Query: 408 -----------------------------------GKVHSFIAGDTSHSLVHKISEKLMR 432
G + F GD +H + +I+ KL+
Sbjct: 778 VFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLG 837
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L + + GY+ K HSE++ALAFGLI+ GS +R+ KNLR+
Sbjct: 838 LMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRV 897
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CGDCHS K+VS R+I++ D YRFHHF +G CSC DYW
Sbjct: 898 CGDCHSFFKFVSGV----LGRKIVLRDPYRFHHFTNGNCSCSDYW 938
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 132/345 (38%), Gaps = 100/345 (28%)
Query: 41 GIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTSMMGMYNV 82
G Q H I CG+ F+G MF +MP+RNV SWTS+M Y+
Sbjct: 78 GFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSD 137
Query: 83 LGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
G +E++N YK ++ EG C + + +
Sbjct: 138 NGSKKEVIN---------TYK-------------------RMRHEGICCNENNIALVISS 169
Query: 143 CG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
CG M++ G LL H K LE+ + NSL+ + C +
Sbjct: 170 CGFLMDIILGH---------QLLGHAL--------KFGLETKVSAANSLIFMFGGCGDIN 212
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A F+++ ++ +SWN++++ A EE + +F M + N
Sbjct: 213 EACSIFNEMNERDTISWNSIISANAQNTLHEE------------SFRYFHWMRLVHEEIN 260
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-------- 313
+LS +L+ C V K GK +HG +++ ++ + + L+S+ S
Sbjct: 261 YTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFR 320
Query: 314 -------FVWNSLIDMY---GRCGAIQKNEGWRYFEM--MKKEYN 346
WNS++ Y GRC K + EM MKKE N
Sbjct: 321 RMPERDLISWNSMLACYVQDGRCLCALK----VFAEMLWMKKEIN 361
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 110/284 (38%), Gaps = 73/284 (25%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ERN SW MM Y +G Y E V F + G+ + +
Sbjct: 14 VFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPS--------------GF 59
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
MI+ AC K ++ K G + H +K L
Sbjct: 60 MIASLV--TACNKSSIM--------------------------AKEGFQFHGFAIKCG-L 90
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D+ V S + FYA + A F+++ +++VSW +++ Y+ G ++E+
Sbjct: 91 IYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEV------ 144
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ + RM + N +++ V+++C + LG ++ G+ L+
Sbjct: 145 ------INTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALKF--------- 189
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
GL T NSLI M+G CG I NE F M +
Sbjct: 190 -------GLETKVSAANSLIFMFGGCGDI--NEACSIFNEMNER 224
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 207/487 (42%), Gaps = 134/487 (27%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK-IK 211
F K S + L G+++H ++ LE V L++ YAKC + +A F +
Sbjct: 136 FALKACSVVPALGEGRQLHSQAFRRG-LEPSPYVQTGLLNLYAKCEEVALARTVFDGMVG 194
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
K+L +W+AM+ GY+ G E AL F M D+ P+ +++ V++A
Sbjct: 195 DKNLAAWSAMIGGYSRVGMVNE------------ALGLFREMQAADVNPDEVTMVSVISA 242
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---GL---GTGSF---------VW 316
CA+ LG+ +H ++ R I + + ALI + GL G F W
Sbjct: 243 CAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAW 302
Query: 317 NSLI-------------DMYGR-------------CGAIQK-------NEGWRYFEMMKK 343
+++I ++ R G + NEG RY+ M+
Sbjct: 303 SAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGRRYWSTMQ- 361
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS---------AEPCNP-DIAE 393
E ++P+ME Y CMVDL R+ D+ +F+ M P+S ++ N DI +
Sbjct: 362 ELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTGMAIPPNSVIWRTLLVASKNSNRFDIVQ 421
Query: 394 HAARHLFELEPLS-------------------------------------------SGKV 410
A++ L ELEP + +G +
Sbjct: 422 SASKKLLELEPCNPENYVLLSNLYASNSQWDRVSYMRKKMKENNVNVVAGCSSIEINGYL 481
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
H F+ D SH + +I L + + + G+ K + C HSE+LA
Sbjct: 482 HKFVVSDDSHPEIKEIRLLLREIADRVVRAGHKPWTAAVLHDVGEEEKEVALCEHSERLA 541
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+A+GL+ T +RV+KNLR C DCH K VSK+ +REII+ D RFH FV+G+
Sbjct: 542 IAYGLLKTKAPHVIRVVKNLRFCPDCHEVAKIVSKS----YDREIIVRDRVRFHRFVEGS 597
Query: 517 CSCGDYW 523
CSC D+W
Sbjct: 598 CSCKDFW 604
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL----IVCGVELCAFL------ 59
+Q+ D+ NPDE VT + C K L+LG VHA + I +EL L
Sbjct: 224 MQAADV-NPDE--VTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAK 280
Query: 60 --------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
G+F+ M ER+ +W++M+ + G E + LF +++
Sbjct: 281 CGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLE 327
>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 624
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 194/458 (42%), Gaps = 126/458 (27%)
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D ++ +L+D +A+C ++A C+ F +I L +WNA+L+ YA R+ +
Sbjct: 176 DRVLGAALLDVFARCG--RIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSA- 232
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
+ LE F RM+ ++PN I+L V+ AC ++ G H Y ++ + ++ V
Sbjct: 233 --ADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA 290
Query: 301 IALIS-----------------------------IQGL---GTGSFVWNSLIDMYGR--- 325
AL+ + GL G G + M+G
Sbjct: 291 TALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVP 350
Query: 326 ----------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
C +EG YF+ M+ E+ +EP++E Y CMVD+L+RAG+ +D
Sbjct: 351 VDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEK 410
Query: 373 FMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSGK------------- 409
+ MP P++A C ++ + L LEP SG
Sbjct: 411 LIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNR 470
Query: 410 ------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
+H F+ GD +H +I + + + + +
Sbjct: 471 WDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSE 530
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
G+ + HSE+LA+AF LI+++PG+P+R+IKNLR+C DCH
Sbjct: 531 CGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHES 590
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K VS R REI+M D RFHHF DG CSCGD+W
Sbjct: 591 AKLVS----RVYGREIVMRDRTRFHHFRDGVCSCGDFW 624
>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
Length = 1108
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 167/699 (23%), Positives = 262/699 (37%), Gaps = 206/699 (29%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV--------------------CG 52
M L D V++ I C L+ G ++H+ ++ CG
Sbjct: 428 MLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCG 487
Query: 53 VELCAFLGMFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC----S 106
A L +F++MP R++ +W M+G Y +E ++ GV S
Sbjct: 488 SIAEAEL-VFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTS 546
Query: 107 ELKDHRVGKDVYDYMISIKFEG--NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL--- 161
L ++ + I G +AC++ ++ M +C +E A F+E D ++
Sbjct: 547 VLSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSW 606
Query: 162 ---------------------------------------------SLLKHGKEIHPHHLK 176
+ L GK IH +
Sbjct: 607 TAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHAC-VT 665
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
+ LE+D+ V N+L++ Y+ C + A F +K + LVSWN M A YA G +E
Sbjct: 666 EIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE--- 722
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A+ F M ++P+ ++ S L GK HG +
Sbjct: 723 ---------AVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSD 773
Query: 297 TGVGIALISIQG----------LGTGSFVWN----------------------------- 317
V L+ + L G+ W
Sbjct: 774 VSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQ 833
Query: 318 --------SLIDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+L+ + CG A EG F MK+ + + P +E Y C VDLL RAGQ +
Sbjct: 834 EGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLE 893
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
++KMPFE ++ C + ++ E A+ + EL+P +S
Sbjct: 894 HAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYC 953
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
+VH F+AGD SH +I L +L
Sbjct: 954 ATGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLEL 1013
Query: 436 EIKKIGY-----------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
+++ GY +K HSE++A+AFGLI+T P + L+++KNLR+CGDCH+
Sbjct: 1014 LMRRAGYEADKGLDAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHT 1073
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TKY+S REII+ D+ RFHHF +G CSC D W
Sbjct: 1074 ATKYISMIMG----REIIVRDSLRFHHFSNGTCSCKDCW 1108
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/385 (21%), Positives = 137/385 (35%), Gaps = 113/385 (29%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y + Q C N+L G + H + G+E FLG +F KM
Sbjct: 28 YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRVGK 115
ERNV SWT+++ G + LF ++ E + AC+ +D +G+
Sbjct: 88 ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++ + + E +
Sbjct: 148 SIHAMIWELGLERESTTAT----------------------------------------- 166
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
LV N++++ YAKC + A F I +K +VSW AM YA +E
Sbjct: 167 ---------LVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYA----QER-- 211
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Y D AL F M+ + PN I+ L AC ++ G +H
Sbjct: 212 --RFYPD---ALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLH---------- 253
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355
+L+ GLG N+LI+MYG+CG + G F+ M ++ + +
Sbjct: 254 ------SLLHEAGLGFDPLAGNALINMYGKCGDWEGAYG--VFKAMASRQELD--LVSWN 303
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFE 380
M+ AG+ D + +++ E
Sbjct: 304 AMISASVEAGRHGDAMAIFRRLRLE 328
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/413 (20%), Positives = 157/413 (38%), Gaps = 121/413 (29%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL---------CA 57
T+LL+S N + T + C +L +G +HA + G+E A
Sbjct: 116 TMLLESSAAPN----SYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNA 171
Query: 58 FLGMFEK-------------MPERNVFSWTSMMGMY-NVLGYYEEIVNLFYLLIDE---- 99
+ M+ K +PE++V SWT+M G Y +Y + + +F ++ +
Sbjct: 172 MINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP 231
Query: 100 ------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
AC+ L+D G ++ + + +++M+ KCG E A G F
Sbjct: 232 NVITFITALGACTSLRD---GTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVF 288
Query: 154 ------EEKDFSNLSLL--------KHG------KEIHPHHLKKDDLE------------ 181
+E D + + + +HG + + ++ + +
Sbjct: 289 KAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG 348
Query: 182 -------------------SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAM 221
D++V N+++ YAKC + A F +I+ K ++SWN M
Sbjct: 349 VDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTM 408
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
L G E+ F + + F M+ + PN +S +L AC+ + G
Sbjct: 409 L------GASEDRKSFGK------VVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG 456
Query: 282 KEIHGYVL-RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++IH +L R + + V L+S MYG+CG+I + E
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVS----------------MYGKCGSIAEAE 493
>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
Length = 781
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 193/434 (44%), Gaps = 140/434 (32%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
+ ++ L+ G E+H ++ LESD+++ ++L+D Y+KC + A F+ + ++L SW
Sbjct: 419 ATVATLECGMEVHACAIRAC-LESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSW 477
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N+M++GYA ++G G+ AL F+RM + P+ I+ GVL+AC+
Sbjct: 478 NSMISGYA------------RHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACS----- 520
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
HI L + G + S+ ++YG
Sbjct: 521 -------------HIGL-------------VDEGFEYFKSMTEVYG-------------- 540
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS------------SAEP 386
+ P +E Y CMVDLL RAG+ D NF+ KMP +P+
Sbjct: 541 --------LVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNG 592
Query: 387 CNPDIAEHAARHLFELEP-------------LSSGK------------------------ 409
++ AA LF ++P S GK
Sbjct: 593 RKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSW 652
Query: 410 ------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP--------------AC 449
VH F+AGD SH I KL L +I+ GY+ +I
Sbjct: 653 VTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLS 712
Query: 450 GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRF 509
HSEKLA+AF +++ + G P+R++KNLR+CGDCHS KY+SK +R I++ D+ RF
Sbjct: 713 YHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVV----DRSIVLRDSNRF 767
Query: 510 HHFVDGACSCGDYW 523
HHF DG CSC DYW
Sbjct: 768 HHFEDGKCSCRDYW 781
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 124/308 (40%), Gaps = 72/308 (23%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE-LK 109
+F++MP+RN +W ++ Y G E+ + +I EG +AC E +
Sbjct: 57 LFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESML 116
Query: 110 DHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGRME-------------------MA 149
R G+ V+ Y I + V +++M+ KCG ++ M
Sbjct: 117 WRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMI 176
Query: 150 SGEFEEKDF-----------------SNLSLLKH------------GKEIHPHHLKKDDL 180
+G + K F SN +L+ G++ H +K L
Sbjct: 177 TGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLG-L 235
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ D+ V+N+L+ YA+ L FS + ++ VSWN ++ A G
Sbjct: 236 DMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSG----------- 284
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
A+E F M++ PN ++ +LA + + KL +IH +L+++++ +
Sbjct: 285 ASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE 344
Query: 301 IALISIQG 308
AL++ G
Sbjct: 345 NALLACYG 352
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 101/233 (43%), Gaps = 50/233 (21%)
Query: 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
+ + +L++LKHG +SDL + N+L++ Y + A F ++ ++
Sbjct: 18 DANLFHLNVLKHG------------FDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRN 65
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
V+W +++GY TQ G E A MI PN + + AC +
Sbjct: 66 GVTWACLISGY------------TQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQE 113
Query: 275 VKGFKL-GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++ G+++HGY +R TG+ A +++ N LI+MY +CG I +
Sbjct: 114 SMLWRRKGRQVHGYAIR------TGLNDAKVAVG---------NGLINMYAKCGDI--DH 156
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL---NFMKKMPFEPSS 383
F +M + ++ + M+ L + F+D + N M+K PS+
Sbjct: 157 ARSVFGLMVDKDSV-----SWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSN 204
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELC---------AFLGMFEK---------- 64
T+A + C + LE G++VHA C + C A + M+ K
Sbjct: 410 TFATVLSACATVATLECGMEVHA----CAIRACLESDVVIGSALVDMYSKCGRIDYASRF 465
Query: 65 ---MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
MP RN++SW SM+ Y G+ + + LF + K +L DH
Sbjct: 466 FNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRM------KLSGQLPDH 509
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 61 MFEKMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
+F +M ER + SW SM+ Y + ++L +L++ G V AC+ +
Sbjct: 363 IFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVA 422
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
G +V+ I E + + ++DM+ KCGR++ AS F NL
Sbjct: 423 TLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNL 474
>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
Length = 592
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 127/471 (26%), Positives = 203/471 (43%), Gaps = 136/471 (28%)
Query: 172 PHHL----KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
PH L K D+ V ++++D YAKC +L A F ++ ++++VSW+A++ GYA
Sbjct: 139 PHALHGLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALICGYAD 198
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G A+ F ++ + N ++S ++ CA F+LG ++H
Sbjct: 199 AGMHP------------AAMGIFRLALEEAVPVNDFTVSSIIRVCAAATLFELGAQVHAR 246
Query: 288 VLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGRCG----A 328
+ + S VG +L+S+ GL ++ +WN+++ + G A
Sbjct: 247 ATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASAQHGHTAAA 306
Query: 329 IQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
++ +EG RYF +MK +Y +EP E Y MVD
Sbjct: 307 FERFMEMQNAGFRPNHITFLCLVTACSHAGLVDEGKRYFSLMK-DYGIEPQAEHYASMVD 365
Query: 360 LLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG- 408
LL R G+ + L+ ++ MP EP + C + D AE AA+ LFE SSG
Sbjct: 366 LLGRVGRIKEALDLIESMPMEPPESVWGALLMSCRIFKDADTAEIAAKRLFETGSRSSGA 425
Query: 409 ------------------------------------------KVHSFIAGDTSHSLVHKI 426
+VH+F++ H +I
Sbjct: 426 HMLLSSTYAAAGRHIDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHQRSEEI 485
Query: 427 SEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
+ L ++ +++ GY+ KR HSE+LA+ GL+ G P+RV
Sbjct: 486 YKVLEKVGEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSERLAIGLGLLIVPQGVPIRV 545
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+KNLR+C DCHS KY++K R +++ DN RFH F DG CSCGD+W
Sbjct: 546 MKNLRVCDDCHSAIKYLTKCTG----RVVVLRDNRRFHRFEDGVCSCGDFW 592
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++MPERNV SW++++ Y G + + +F L ++E V + C+
Sbjct: 177 LFDEMPERNVVSWSALICGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCAAATL 236
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+G V+ + + V ++ ++ KCG +E A F E NL +
Sbjct: 237 FELGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGI 289
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 164/701 (23%), Positives = 277/701 (39%), Gaps = 204/701 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--------- 59
Q MD +Y +F+ C +L +L G +H + + G+E + L
Sbjct: 68 FFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRM-GIENPSVLLQNCVLQMY 126
Query: 60 ----------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+F++M + N S T+M+ Y G ++ V LF +++ G
Sbjct: 127 CECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYT 186
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---- 155
+ K+ + +G+ ++ ++I NA ++ +++M++KCG + A F++
Sbjct: 187 TLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVK 246
Query: 156 --------------------------------------------KDFSNLSLLKHGKEIH 171
K ++L L+ GK+IH
Sbjct: 247 KPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIH 306
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGF 230
+ K LE ++ V L+DFY KC + A F +I++ + VSW+A+++GY + F
Sbjct: 307 AC-VAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQF 365
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E + F S + + N+ + + + AC+ + +G ++H ++
Sbjct: 366 EEAVKTFK------------SLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIK 413
Query: 291 HHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLID---MYGR------- 325
+ S ALI++ + + V W + I YG
Sbjct: 414 RSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRL 473
Query: 326 ------CG-----------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
CG A +G Y + M ++YN+ P ++ Y CM+D+ A
Sbjct: 474 FEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYA 533
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE-PC---------NPDIAEHAARHLFELEPLSS----- 407
R+G D+ L FMK MPFEP + C N ++ + A L +L+P +
Sbjct: 534 RSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAGYVL 593
Query: 408 --------------------------------------GKVHSFIAGDTSHSLVHKISEK 429
GK+H FI GD H +I EK
Sbjct: 594 PFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQEIYEK 653
Query: 430 LMRLYSEIKKIGYM-----KRIPACGHSEKLALAFGLISTSPGS--PLRVIKNLRMCGDC 482
L ++ + +R HSE+LA+AFGLIS + + P++V KNLR C DC
Sbjct: 654 LKEFDGFMEGDMFQCSMTERREQLLDHSERLAIAFGLISVNGNARAPIKVFKNLRACPDC 713
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H K+VS E I++ D+ RFHHF +G CSC DYW
Sbjct: 714 HEFAKHVSLVTGHE----IVIRDSRRFHHFKEGKCSCNDYW 750
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 159/622 (25%), Positives = 251/622 (40%), Gaps = 161/622 (25%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS 75
++PD ++ I + C L+ G Q+H H+I G E F+ T+
Sbjct: 46 SSPD--AFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFV-------------LTA 90
Query: 76 MMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV-YDYMISIKFEGNACVKR 134
++ MY G E+ +F E H V Y+ +IS + N+ V
Sbjct: 91 LISMYCKCGLVEDARKVF-------------EENPHSSQLGVCYNALIS-GYTANSKVSD 136
Query: 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH----GKEIHPHHLKKDDLESDLLVNNSL 190
MF + ++ L + G+ +H +K S++ V NS
Sbjct: 137 AAF-MFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTY-SEVAVLNSF 194
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
+ Y KC ++ F ++ K L++WNA+++GY+ G ++ LE F
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV------------LELF 242
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG-- 308
+M + + P+ +L VL++CA + K+G+E+ V + + + ALIS+
Sbjct: 243 EQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARC 302
Query: 309 ------------LGTGSFV-WNSLIDMYGRCGAIQK------------------------ 331
+ S V W ++I YG G +
Sbjct: 303 GNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVL 362
Query: 332 ---------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
++G F MK+EY +EP E Y C+VDLL RAG+ D+ + F+ MP EP
Sbjct: 363 SACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPD 422
Query: 383 SA------EPC----NPDIAEHAARHLFELEPLS-------------------------- 406
A C N D+AE A + E EP++
Sbjct: 423 GAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVM 482
Query: 407 -----------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI--------G 441
GKVH F+AGD SH ++ L L + + ++ G
Sbjct: 483 MRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRG 542
Query: 442 YMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREI 501
HSE+LA+AFG++++ PG+ + VIKNLR+C DCH K VSK +R
Sbjct: 543 EEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKI----VDRRF 598
Query: 502 IMIDNYRFHHFVDGACSCGDYW 523
++ D RFH+F DG CSC DYW
Sbjct: 599 VVRDASRFHYFKDGVCSCKDYW 620
>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/551 (25%), Positives = 228/551 (41%), Gaps = 149/551 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+FE+MPE + SWT+M+ YN +G +E + +F ++ + V +C+ ++
Sbjct: 101 VFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVEC 160
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G+ V+ +++ V +L+M+ K G A F+ + S
Sbjct: 161 LGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSTF------ 214
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+L+D Y K + A F ++ + +V+W AM+ GY GF
Sbjct: 215 -----------------TALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGF 257
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
++ A+E F MI+ +PN +L+ +L+ + + G++IH R
Sbjct: 258 NQD------------AMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATR 305
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
G + V N+LI MY + G+I N+ F ++ + +
Sbjct: 306 ----------------SGNASSVSVSNALITMYAKSGSI--NDARWVFNLIHWKRDTI-- 345
Query: 351 MEQYCCMVDLLARAGQFDDTLN-----------FMKKMPFEP------SSAEPC----NP 389
+ M+ LA+ G ++ L F++ MP EP S C N
Sbjct: 346 --TWTSMIIALAQHGLGEEALTLFERMLENAHAFIENMPIEPDVIAWGSLLASCKVHKNV 403
Query: 390 DIAEHAARHLFELEPLSSG----------------------------------------- 408
++AE AA L +EP +SG
Sbjct: 404 ELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQI 463
Query: 409 --KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHS 452
KVH F D H I E + +++ EIKK+G+ +K HS
Sbjct: 464 KNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHS 523
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AFGLI T + LR++KNLR+C DCHS K++SK REII+ D RFHHF
Sbjct: 524 EKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVG----REIIVRDATRFHHF 579
Query: 513 VDGACSCGDYW 523
+G CSC DYW
Sbjct: 580 KNGLCSCRDYW 590
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 89/180 (49%), Gaps = 36/180 (20%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK IH +K L + + N+LM+FYAK ++ AH F ++ K + SWN +L+GYA
Sbjct: 32 GKSIHARIIKAG-LHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90
Query: 227 LGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
GG EE I G+ Q G E A+ F M+ D+ P +L+
Sbjct: 91 KGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTN 150
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VLA+CA V+ +G+++H +V++H GL + V NSL++MY + G
Sbjct: 151 VLASCAAVECLGIGRKVHSFVVKH----------------GLSSYISVANSLLNMYAKSG 194
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 164/703 (23%), Positives = 273/703 (38%), Gaps = 208/703 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL--------- 59
LQ MD + +Y +F+ C +L +L G +H + + G+E + L
Sbjct: 70 FLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHDRMRM-GIENPSVLLQNCVLQMY 128
Query: 60 ----------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
+F++M E N S T+M+ Y G ++ V LF ++ G
Sbjct: 129 CECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYT 188
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---- 155
+ K+ + G+ ++ ++I N ++ +++M++KCG + A F++
Sbjct: 189 TLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVK 248
Query: 156 --------------------------------------------KDFSNLSLLKHGKEIH 171
K ++L L GK+IH
Sbjct: 249 KPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIH 308
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-LGGF 230
+ K LES++ V L+DFY KC + A F +I++ + VSW+A+++GY + F
Sbjct: 309 AC-VAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQF 367
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E + F ++ N+ + + + AC+ + +G ++H ++
Sbjct: 368 EEAVKTFKSLRSKNASI------------LNSFTYTSIFQACSVLADCNIGGQVHADAIK 415
Query: 291 HHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQKNEGW 335
+ S ALI++ + + V W + I + G +E
Sbjct: 416 RSLIGSQYGESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYG--NASEAL 473
Query: 336 RYFE-----------------------------------MMKKEYNMEPAMEQYCCMVDL 360
R FE M ++YN+ P ++ Y CM+D+
Sbjct: 474 RLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDI 533
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAE-PC---------NPDIAEHAARHLFELEPLSS--- 407
AR+G D+ L FMK MPFEP + C N ++ E A L +L+P +
Sbjct: 534 YARSGLLDEALKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGY 593
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
GK+H FI GD H +I
Sbjct: 594 VLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIY 653
Query: 428 EKLMRLYSEIKKIGYM-----KRIPACGHSEKLALAFGLIST--SPGSPLRVIKNLRMCG 480
EKL ++ + +R HSE+LA+AFGLIS + +P++V KNLR C
Sbjct: 654 EKLKEFDGFMEGDMFQCNMTERREQLLDHSERLAIAFGLISVHGNAPAPIKVFKNLRACP 713
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH K+VS E I++ D+ RFHHF +G CSC DYW
Sbjct: 714 DCHEFAKHVSLVTGHE----IVIRDSRRFHHFKEGKCSCNDYW 752
>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 637
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 216/539 (40%), Gaps = 188/539 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPERN +WT M+ Y G+ +E +LL+ E V+ L +
Sbjct: 211 LFDEMPERNEVAWTVMIVGYVGNGFTKEA----FLLLKEMVFGCGFRLSF----VTLCSV 262
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ + G+ CV G+ +H + +K+ L
Sbjct: 263 LSACSQSGDVCV----------------------------------GRWVHCYAVKEMGL 288
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ ++V SL+D YAKC + A F + ++++V+WNAML G A+ +
Sbjct: 289 DFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAM------------H 336
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ A++ F M++ +++P+ ++ +L+AC+
Sbjct: 337 GMGKIAVDMFPSMVE-EVKPDGVTFMALLSACSH-------------------------- 369
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
G ++K GW YF ++ Y ++P +E Y CMV L
Sbjct: 370 -------------------------SGLVEK--GWDYFHDLEPVYRIKPEIEHYACMVGL 402
Query: 361 LARAGQFDDTLNFMKKMPFEP------SSAEPCNP----DIAEHAARHLFELEPLSS--- 407
L RAG+ ++ +K M P S C + E R L E++PL++
Sbjct: 403 LGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLNTEYH 462
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
GK+H FIAGD SH+ +I
Sbjct: 463 IVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRTSEIY 522
Query: 428 EKLMRLYSEIKKIGYMKRIP-----ACG------------------HSEKLALAFGLIST 464
KL + ++ GY+ C HSEKLAL FGL+ST
Sbjct: 523 MKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFGLMST 582
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GSPL + KNLR+C DCHS K SK K REI++ D YRFH F G+CSC DYW
Sbjct: 583 PSGSPLHIFKNLRICQDCHSAIKIASKVYK----REIVVRDRYRFHSFKHGSCSCSDYW 637
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 37/179 (20%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------------ 233
V N+LM+ Y K + A F I+ + +VSW+ L G E
Sbjct: 160 VCNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERN 219
Query: 234 -------ITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I G+ G + A M+ + + ++L VL+AC+Q +G+ +H
Sbjct: 220 EVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVH 279
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
Y ++ GL G V SL+DMY +CG I N F M K
Sbjct: 280 CYAVKE---------------MGLDFGVMVGTSLVDMYAKCGRI--NAALSVFRSMLKR 321
>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
lyrata]
Length = 1038
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 155/575 (26%), Positives = 234/575 (40%), Gaps = 174/575 (30%)
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+MP R+V +W +++G GY E +E KA + + RV
Sbjct: 523 QMPRRDVVAWNALIG-----GYAE----------NEDPDKALAAFQTLRV---------- 557
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
EG + V+ + C + G+ LL+ GK +H + + ESD
Sbjct: 558 ---EGVSANYITVVSVLSAC----LVPGD----------LLERGKPLHAY-IVSAGFESD 599
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V NSL+ YAKC L + F+ + + +++WNA+LA A +G G
Sbjct: 600 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANA------------HHGHG 647
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E L+ S+M + + S S L+A A++ + G+++HG ++ +L + A
Sbjct: 648 EEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAA 707
Query: 304 ISIQGL--GTGSFV-------------WNSLIDMYGRCGAIQK----------------- 331
+ G V WN LI GR G ++
Sbjct: 708 ADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIKPGH 767
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
++G Y++M+ K++ +EPA+E C++DLL R+G+ + F+
Sbjct: 768 VTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAETFIS 827
Query: 376 KMPFEP------SSAEPC----NPDIAEHAARHLFELEP-------LSSG---------- 408
KMP +P S C + D AA +L +LEP LSS
Sbjct: 828 KMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGRWED 887
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
KV SF GD +H +I KL + IK+ GY
Sbjct: 888 VENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGY 947
Query: 443 MKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
+ HSE+LALA+ L+ST GS +R+ KNLR+C DCHS K+
Sbjct: 948 VADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKF 1007
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
VS R R I++ D YRFHHF G CSC DYW
Sbjct: 1008 VS----RVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/387 (21%), Positives = 149/387 (38%), Gaps = 106/387 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LCAFLG----------MFEKM 65
+ +L+ C L + LG Q+ +I G+E L + G +F ++
Sbjct: 263 SMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQI 322
Query: 66 PERNVFSWTSMMGMYNVLGYYEE---IVNLFYLLIDEGVYKACSEL------KDH-RVGK 115
ER+ SW S++ Y G+ EE I NL DE S L DH + G+
Sbjct: 323 SERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGR 382
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------------- 161
++ ++ + F+ CV +L M+ GR E A F++ +L
Sbjct: 383 GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDG 442
Query: 162 ----------SLLKHGKEIH-------------PHHLKK----------DDLESDLLVNN 188
S+++ GK ++ P K L + ++ N
Sbjct: 443 RSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGN 502
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y K + + ++ ++ +V+WNA++ GYA + D + AL
Sbjct: 503 ALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYA------------ENEDPDKALA 550
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKG--FKLGKEIHGYVLRHHIQLSTGVGIALISI 306
F + + N I++ VL+AC V G + GK +H Y++
Sbjct: 551 AFQTLRVEGVSANYITVVSVLSACL-VPGDLLERGKPLHAYIVS---------------- 593
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNE 333
G + V NSLI MY +CG + ++
Sbjct: 594 AGFESDEHVKNSLITMYAKCGDLSSSQ 620
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 72/298 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+KMP RN SW +MM +G Y E + F + D G+ + +
Sbjct: 115 LFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPS--------------SF 160
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+I+ + CGR SG S+ + G ++H + K L
Sbjct: 161 VIA--------------SLVTACGR----SG----------SMFREGVQVHGF-VAKSGL 191
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
SD+ V+ +++ Y + + F ++ +++VSW +++ GY+ G EE+
Sbjct: 192 LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEV------ 245
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
++ + M ++ N S+S V+++C +K LG++I G V++ ++ V
Sbjct: 246 ------IDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVE 299
Query: 301 IALISIQG-LGTGSFV--------------WNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+LIS+ G +G + WNS++ Y + G I+ E R F +M++
Sbjct: 300 NSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIE--ESSRIFNLMRR 355
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 76/240 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+FE+MP+RNV SWTS+M Y+ G EE+++++ + EGV +C LKD
Sbjct: 217 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKD 276
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+G R ++ IK G
Sbjct: 277 ESLG-------------------RQIIGQVIKSG-------------------------- 291
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
LES L V NSL+ + + A+ F++I ++ +SWN+++A YA G
Sbjct: 292 ---------LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGH 342
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE + F+ M + + N+ ++S +L+ V K G+ IHG V++
Sbjct: 343 IEESS------------RIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVK 390
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F++ FS ++ G+ +H +K + +L N+L++ Y K +K A F K+
Sbjct: 63 FDQTGFSQITRETTGRALHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPV 121
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
++ VSWN M++G G E +EFF +M ++P++ ++ ++ AC
Sbjct: 122 RNEVSWNTMMSGIVRVGLYLE------------GMEFFQKMCDLGIKPSSFVIASLVTAC 169
Query: 273 AQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
+ F+ G ++HG+V + + V A++ + G+
Sbjct: 170 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGV 207
>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
Length = 838
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 126/475 (26%), Positives = 201/475 (42%), Gaps = 135/475 (28%)
Query: 172 PH---HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAMLAGYA 226
PH + ++ D ++ +L+D +A+C ++A C+ F +I L +WNA+L+ YA
Sbjct: 376 PHEVCQILNNETSCDRVLGAALLDVFARCG--RIASCRKVFDRIANPDLPAWNALLSAYA 433
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
R+ + + LE F RM+ ++PN I+L V+ AC ++ G H
Sbjct: 434 RLRARDVACASSA---ADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHT 490
Query: 287 YVLRHHIQLSTGVGIALI----------------------------------SIQGLGTG 312
Y ++ + ++ V AL+ ++ G G
Sbjct: 491 YAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRA 550
Query: 313 SFVWNSLID-MYGR-------------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYC 355
+ SL D M+G C +EG YF+ M+ E+ +EP++E Y
Sbjct: 551 AL---SLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYG 607
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPL 405
CMVD+L+RAG+ +D + MP P++A C ++ + L LEP
Sbjct: 608 CMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPD 667
Query: 406 SSGK-------------------------------------------VHSFIAGDTSHSL 422
SG +H F+ GD +H
Sbjct: 668 DSGNHVLISNFYATTNRWDDAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPA 727
Query: 423 VHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGS 468
+I + + + + + G+ + HSE+LA+AF LI+++PG+
Sbjct: 728 SKEIYAMVEDIETRLSECGHRSSTSSALFDVEEEDKADALSYHSERLAIAFALIASNPGA 787
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R+IKNLR+C DCH K VS R REI+M D RFHHF DG CSCGD+W
Sbjct: 788 PIRIIKNLRVCADCHESAKLVS----RVYGREIVMRDRTRFHHFRDGVCSCGDFW 838
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 153/635 (24%), Positives = 263/635 (41%), Gaps = 176/635 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM-------------FEKM 65
T+ +F+ C K + G Q+HA ++ G+ + + + M F+
Sbjct: 80 TFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTS 139
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDVYD 119
R+V S+T+M+ Y G ++ +F + + V +E+ ++ ++++
Sbjct: 140 SHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFN 199
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
M+ + + + VL G +E+ G++IH +
Sbjct: 200 EMMKMDVKPDESTMATVLSTCTHSGNVEL------------------GRQIHSW-IDNHG 240
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
S+L + N+L+D Y+KC ++ AH F ++ K ++SWN ++ GYA +E
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKE------ 294
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQLST 297
AL F M++ PN +++ +L ACA + +G+ IH Y+ + I +T
Sbjct: 295 ------ALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNT 348
Query: 298 GVGIALISIQG----LGTGSFVWNSLID--------------MYGRCGA----------- 328
+ +LI + + + V++++++ M+GR A
Sbjct: 349 SLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKD 408
Query: 329 -IQKNE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
I+ ++ G + F+ M +Y +EP +E Y CM+DLL R+G F +
Sbjct: 409 GIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKE 468
Query: 370 TLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK---------- 409
+ M EP S + C N ++ E A+ L ++EP + G
Sbjct: 469 AEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYAT 528
Query: 410 ---------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSE 436
VH F+ GD H +I + L + S
Sbjct: 529 SARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSL 588
Query: 437 IKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+ + G+ +K HSEKLA+AFGLIST PG+ LR++KNLR+C +C
Sbjct: 589 LAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNC 648
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
H TK +SK K REII D RFHHF DG C
Sbjct: 649 HEATKLISKIYK----REIIARDRSRFHHFKDGMC 679
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 128/287 (44%), Gaps = 63/287 (21%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSEL 108
+ +F+ + E N SW +M+ + + +NL+ +I G+ +K+C++
Sbjct: 32 ISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKS 91
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
K + GK ++ ++ + V ++ M+ + G +E A F+
Sbjct: 92 KAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSS----------- 140
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA-L 227
D++ +++ YA + A F +I K +VSWNAM++GYA +
Sbjct: 141 ------------HRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEI 188
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G ++E ALE F+ M++ D++P+ +++ VL+ C +LG++IH +
Sbjct: 189 GRYKE-------------ALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSW 235
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334
+ H G G+ + N+LID+Y +CG +++ G
Sbjct: 236 IDNH----------------GFGSNLKLVNALIDLYSKCGEMERAHG 266
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 38/196 (19%)
Query: 188 NSLMDFYAKCRY---LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+ L+DF Y L A F I++ + +SWN M+ G+AL D
Sbjct: 13 SKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSS------------DPI 60
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
+AL + MI + PN+ + + +CA+ K + GK+IH +L++
Sbjct: 61 SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKY------------- 107
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
GL V SLI MY + G ++ + + F+ + Y M+ A
Sbjct: 108 ---GLTVDLHVHTSLISMYAQNGIVE--DAHKVFDTSSHR-----DVVSYTAMITGYASR 157
Query: 365 GQFDDTLNFMKKMPFE 380
G D ++P +
Sbjct: 158 GNMDKAQKMFDEIPIK 173
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 153/573 (26%), Positives = 233/573 (40%), Gaps = 199/573 (34%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM 77
PD T T + + + C L +L G +H G+ EK+ R SWTSM+
Sbjct: 159 PD--TFTCSSVLRACLNLLDLSNGRILH--------------GVVEKVGFR---SWTSMI 199
Query: 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
Y G +E ++LF + + GV C+E +++ AC L
Sbjct: 200 AGYVQCGKAKEAIHLFAKMEEAGV--KCNE--------------VTVVAVLAACADLGAL 243
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
D+ ++ ++SN +HG + ++ ++N+L+D Y KC
Sbjct: 244 DLGMRI------------HEYSN----RHG------------FKRNVRISNTLIDMYVKC 275
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257
L+ A F +++++ +VSW+AM I G +G E AL FS M Q
Sbjct: 276 GCLEEACKVFEEMEERTVVSWSAM------------IGGLAMHGRAEEALRLFSDMSQVG 323
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317
++PN ++ G+L AC+ + LIS
Sbjct: 324 IEPNGVTFIGLLHACSH--------------------------MGLIS------------ 345
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG R+F M ++Y + P +E Y CMVDLL+RAG + F+ M
Sbjct: 346 ---------------EGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNM 390
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
P +P+ C N ++AE A +HL EL+PL+ G
Sbjct: 391 PMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTA 450
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMK 444
VH F+AG+ SH +I ++ L E++ GY+
Sbjct: 451 RVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVP 510
Query: 445 RIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
HSEKLAL FGL++T +P+R++KNLR+C DCHS K +S
Sbjct: 511 NTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLIS 570
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFH F D +CSC DYW
Sbjct: 571 AIVN----REIVVRDRNRFHCFNDNSCSCRDYW 599
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 145/585 (24%), Positives = 232/585 (39%), Gaps = 186/585 (31%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERNV 70
F C + LE G QVH+ + G + +++ +F++M ++
Sbjct: 425 FFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDT 484
Query: 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDVYDYMISI 124
S+ S M ++E ++F + V AC++ +++ M+
Sbjct: 485 VSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHE 544
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
+ N P+L + + NL + G++IH +K ++S L
Sbjct: 545 RELPNP----PILTILLGLS--------------GNLGAPQLGQQIHTIAIKLG-MDSGL 585
Query: 185 LVNNSLMDFYAKCRY---LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+V N+L+ Y KC LKV F ++++ + +WN ++ GYA Q+G
Sbjct: 586 VVANALVSMYFKCSSADSLKV----FDSMEERDIFTWNTIITGYA------------QHG 629
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G A+ + M+ + PN ++ G+L AC+
Sbjct: 630 LGREAIRMYQLMVSAGVLPNEVTFVGLLHACSH--------------------------- 662
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+ L+D EG ++F+ M +Y + P +E Y CMVDLL
Sbjct: 663 ---------------SGLVD-----------EGHQFFKSMSSDYGLTPLLEHYACMVDLL 696
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG +F+ MP EP S C N +I AA LF +EP ++G
Sbjct: 697 GRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYV 756
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+HSF+ GD H + I
Sbjct: 757 MLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYA 816
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L LY+ +K GY+ K HSEKLA+A+GL+ T G P++++K
Sbjct: 817 TLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMK 876
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
NLR+CGDCH+ K+VS K REI + D RFHHF +G+CSC
Sbjct: 877 NLRICGDCHTFIKFVSSVTK----REIDVRDGNRFHHFRNGSCSC 917
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/356 (21%), Positives = 144/356 (40%), Gaps = 61/356 (17%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+FE+MPERN SWT M+ Y ++ + ++F ++ EG V A L
Sbjct: 179 LFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGK 238
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF-------EEKDFSNL-- 161
+ + ++ + FE + V +L+ + K M ++ +F E +S +
Sbjct: 239 PGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIA 298
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
+L + G+ + + D + S++ A+ + A F +I + ++VSWNAM
Sbjct: 299 ALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAM 358
Query: 222 LAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262
+ GY +E I G+ + G E AL + + M P+
Sbjct: 359 ITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSL 418
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322
SL+ AC+ ++ + GK++H ++ Q + S+V N+LI +
Sbjct: 419 SSLTSSFFACSNIEALETGKQVHSLAVKAGCQFN----------------SYVCNALITL 462
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
YG+ +I + F+ M + + Y + L + FD+ + MP
Sbjct: 463 YGKYRSIGSVR--QIFDRMTVKDTV-----SYNSFMSALVQNNLFDEARDVFNNMP 511
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 152/572 (26%), Positives = 245/572 (42%), Gaps = 144/572 (25%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG---- 60
++PD+ T+ + + C + G QVH ++ G + L G
Sbjct: 124 SSPDK--HTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDL 181
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F++MPER++ SW SM+ G Y+ + LF E++
Sbjct: 182 ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF------------REMQR------- 222
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
FE + + VL G + + G H L+K
Sbjct: 223 -------SFEPDGYTMQSVLSACAGLGSLSL------------------GTWAHAFLLRK 257
Query: 178 DDLES--DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
D++ D+LV NSL++ Y KC L++A F ++++ L SWNAM I
Sbjct: 258 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM------------IL 305
Query: 236 GFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH- 292
GF +G E A+ FF RM+ + +++PN+++ G+L AC G++ ++R +
Sbjct: 306 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 365
Query: 293 -----------IQLSTGVG-----IALISIQGLGTGSFVWNSLIDMYGRCGA-IQKNEGW 335
+ L G I ++ + + +W SL+D + GA ++ +E
Sbjct: 366 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEI 425
Query: 336 RYFEMMKKEYNMEPAME---QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ KE N Y + + A A +++D + ++K+ ++
Sbjct: 426 ARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND-VGIVRKL-------------MS 471
Query: 393 EHAARHLFELEPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---K 444
EH R EP S G H F AGDTSH +I ++L + ++ IGY+
Sbjct: 472 EHGIRK----EPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 527
Query: 445 RIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ P HSE+LA+AFGLI+ P +P+R+ KNLR+C DCH TK +SK
Sbjct: 528 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 587
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF DG+CSC DYW
Sbjct: 588 V----FNTEIIVRDRVRFHHFKDGSCSCLDYW 615
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 41/180 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISL 265
F I+ WN ++ A R+E A + +M++ + P+ +
Sbjct: 83 FDSIENHSSFMWNTLIRACAHDVSRKE-----------EAFMLYRKMLERGESSPDKHTF 131
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
VL ACA + GF GK++H +++H G G +V N LI +YG
Sbjct: 132 PFVLKACAYIFGFSEGKQVHCQIVKH----------------GFGGDVYVNNGLIHLYGS 175
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEP--AMEQYCCMVDLLARAGQFDDTLNFMKKM--PFEP 381
CG + ++ +K ++ P ++ + M+D L R G++D L ++M FEP
Sbjct: 176 CGCL---------DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP 226
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 141/485 (29%), Positives = 199/485 (41%), Gaps = 134/485 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS L+ G IH H + SD V +L+ Y+KC L VA F I+ + +
Sbjct: 113 KACADLSALRTGAAIHAHSILLG-FGSDRFVLTALVVLYSKCGQLGVARKLFDAIRDRSV 171
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WNAM++GY Q G E + + M P++++ L+ACAQ
Sbjct: 172 VAWNAMISGY------------EQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQA 219
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLI 320
LG+E+ V+ + +S +G AL+++ L + V W S+I
Sbjct: 220 GALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMI 279
Query: 321 DMYG---------------RCGAIQKN------------------EGWRYFEMMKKEYNM 347
YG RC N EG F MK+ Y +
Sbjct: 280 AGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGL 339
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEP------SSAEPC----NPDIAEHAA 396
P +E YC MVD+ RAG D+ + F+ MP EP + C N ++ A
Sbjct: 340 VPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVA 399
Query: 397 RHLFELEPLS-------------SGKVHS------------------------------F 413
L LEP + SGK+H F
Sbjct: 400 ERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLF 459
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG--------------HSEKLALAF 459
G+ SH +I L L I GYM + HSEKLA+A+
Sbjct: 460 RMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAY 519
Query: 460 GLI-STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
GL+ S +P+RVIKNLR+CGDCH K++S E REI++ D +RFHHF DG CS
Sbjct: 520 GLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVEN----REIVVRDKHRFHHFKDGKCS 575
Query: 519 CGDYW 523
C +YW
Sbjct: 576 CLEYW 580
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 53/172 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM---------------- 61
PD ++T+ C + L+LG +V ++ +++ FLG
Sbjct: 204 PD--SMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKAR 261
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F+ + ERNV +WTSM+ Y + G+ E + LF+L+ EG V AC+
Sbjct: 262 RWFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAG 321
Query: 110 DHRVGKDVYDYMISIKFEGNACVKR------------PVLDMFIKCGRMEMA 149
G+D + AC+KR ++DMF + G ++ A
Sbjct: 322 LVMEGRDAF-----------ACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEA 362
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 151/606 (24%), Positives = 244/606 (40%), Gaps = 200/606 (33%)
Query: 61 MFEKMPERNVFSWTSMM------GMYN-VLGYYEEIVNLFYLLIDE----GVYKACSELK 109
MF+KM R+V +W+ M+ G++N L +EE+ N + + DE V AC
Sbjct: 179 MFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKN-YNVEPDEMMLSTVLSACGRAG 237
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+ GK ++D+++ + ++ ++ M+ CG M++A FE+ NL
Sbjct: 238 NLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNL-------- 289
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ + +++ Y+K ++ A F+++ +K LV W+AM++GYA
Sbjct: 290 ---------------VASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYA--- 331
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
+ + AL F+ M ++P+ +++ V+ ACA + K IH +V
Sbjct: 332 ---------ESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVD 382
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE------------GW-- 335
++ G G + N+LI+MY +CG++++ W
Sbjct: 383 KN----------------GFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426
Query: 336 ---------------RYFEMMKKEYNMEP----------------AMEQ----------- 353
R+F M+ E N+EP +E+
Sbjct: 427 MISAFAMHGDAGSALRFFHQMEDE-NIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINE 485
Query: 354 ---------YCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPCNP----DIAEH 394
Y CMVDL RA + L ++ MP P S C ++ E
Sbjct: 486 HNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEF 545
Query: 395 AARHLFELEPLSSG-------------------------------------------KVH 411
AA+ L EL+P G ++H
Sbjct: 546 AAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIH 605
Query: 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLAL 457
F+ D SH +I EKL + S++K +GY + HSEKLAL
Sbjct: 606 EFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLAL 665
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
+GL+ GS +R+IKNLR+C DCH+ K SK EREI++ D RFHH+ DG C
Sbjct: 666 CYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKV----YEREIVVRDRTRFHHYKDGVC 721
Query: 518 SCGDYW 523
SC DYW
Sbjct: 722 SCKDYW 727
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K S + L G EIH K +SD V L+ YA C + A F K+ + +
Sbjct: 130 KALSRVKSLVEGLEIHGL-AAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDV 188
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W+ M+ GY G + D AL F M +++P+ + LS VL+AC +
Sbjct: 189 VTWSIMIDGYCQSGL---------FND---ALLLFEEMKNYNVEPDEMMLSTVLSACGRA 236
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
GK IH +++ ++I + + AL++ MY CG++ +
Sbjct: 237 GNLSYGKMIHDFIMENNIVVDPHLQSALVT----------------MYASCGSM--DLAL 278
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
FE M + + MV ++ GQ ++ + +M
Sbjct: 279 NLFEKMTPK-----NLVASTAMVTGYSKLGQIENARSVFNQM 315
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 164/681 (24%), Positives = 267/681 (39%), Gaps = 207/681 (30%)
Query: 34 KLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTS 75
KL +L+ Q+HA +I G+ FL +F P +NV SWT
Sbjct: 33 KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTI 92
Query: 76 MMGMYNVLGYYEEIVNLFYLLI----------DEGVYKACSELKDHRVGKDVYDYMISIK 125
++ + E +++F +I V A + L R+ K V+ + +
Sbjct: 93 LISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIHPHHLKKDDL-- 180
FEGN V+ ++DM+ K G M +A FE E++ + + G H + DL
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFN 212
Query: 181 ------------------------------------------ESDLLVNNSLMDFYAKCR 198
E+D + +LMD Y
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHN 272
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-D 257
+ AH FS++ K + +W ML TGF+ + A++ F++M+ +
Sbjct: 273 CVDDAHRVFSEMSVKDVAAWTLML------------TGFSSGRHWDRAIKHFNKMLGIQN 320
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---------- 307
++ ++I+L G+L++C+ + G+ +H ++ + VG A+I +
Sbjct: 321 LKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAK 380
Query: 308 ----GLGTGSFV-WNSLIDMYGRCG---------------------------------AI 329
G+G V WN++I G G A
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAG 440
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SS 383
EG + F M K ++ P ++ Y C++D+L RAGQ D +F+ MPF+P +
Sbjct: 441 MVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTL 500
Query: 384 AEPC----NPDIAEHAARHLFELEPLSSG------------------------------- 408
C N + ++ +FE+EP +G
Sbjct: 501 LGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMK 560
Query: 409 ------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-------------- 442
++++F+AG+ H KI L L +IKK GY
Sbjct: 561 KDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDD 620
Query: 443 MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
MK+ HSEK+A+AFGL+ T P + +R+ KNLR C DCH+ +K+VSK R ++
Sbjct: 621 MKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFG----RVLV 676
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFH F DG CSC DYW
Sbjct: 677 IKDANRFHVFQDGVCSCRDYW 697
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 155/648 (23%), Positives = 251/648 (38%), Gaps = 213/648 (32%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-- 60
D P+ T+T + L++L+ ++HA + G +++ + LG
Sbjct: 290 DEVEPNLMTITSVTVASGL--LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRM 347
Query: 61 -----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR--- 112
+F +M R+ SWT+M+ Y G+ ++ + ++ L+ V +
Sbjct: 348 GEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAAC 407
Query: 113 -------VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME------------------ 147
VG +++ S F V +++M+ K +E
Sbjct: 408 ASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWS 467
Query: 148 --MASGEFEEKDFSNLSLLKH---------------------------GKEIHPHHLKKD 178
+A F K+F L +H GKEIH H L++
Sbjct: 468 SMIAGFCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQG 527
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ S+ V N+L+D Y KC A +F K +VSWN MLAG F
Sbjct: 528 -IASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAG------------FV 574
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+G G+ AL FF+ M++T P+ ++ +L C+
Sbjct: 575 AHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCS------------------------- 609
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
R G + ++GW F M ++Y++ P ++ Y CMV
Sbjct: 610 --------------------------RAGMV--SQGWELFHSMTEKYSIVPNLKHYACMV 641
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG 408
DLL+R G+ + NF+ +MP P +A C N ++ E AA+ + ELEP +G
Sbjct: 642 DLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAG 701
Query: 409 -------------------------------------------KVHSFIAGDTSHSLVHK 425
+H+F+ D SH + +
Sbjct: 702 YHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKE 761
Query: 426 ISEKLMRLYSEIKKIGYM-------------KRIPACGHSEKLALAFGLISTSPGSPLRV 472
I++ L +Y +K G+ K CGHSE+LA+AFGLI+T+PG+ + V
Sbjct: 762 INDVLDGIYERMKASGFAPVESYSLEDKEVSKDDVLCGHSERLAVAFGLINTTPGTSICV 821
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCG 520
KN C CH + +SK + REI + D FHHF DG+CSCG
Sbjct: 822 TKNQYTCESCHGILRMISKIVR----REITVRDTKEFHHFRDGSCSCG 865
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 142/329 (43%), Gaps = 87/329 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F KMPER+VFSW M+G Y G+ EE ++L++ ++ G V ++C + D
Sbjct: 151 VFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPD 210
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MASG 151
+G++V+ +++ V ++ M+ KCG +E M +G
Sbjct: 211 LTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAG 270
Query: 152 EFEEKDFSN-----------------------------LSLLKHGKEIHPHHLKKDDLES 182
FE + LS L KEIH +K+ +
Sbjct: 271 HFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKR-GFAT 329
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ NSL+ Y+ + A FS+++ + +SW AM++GY GF ++
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDK--------- 380
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
ALE ++ M ++ P+ ++++ LAACA + +G ++H +L+T G
Sbjct: 381 ---ALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLH--------ELATSKGFI 429
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
+ V N+L++MY + I+K
Sbjct: 430 RYIV--------VANALVEMYAKSKIIEK 450
>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
Length = 923
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 138/478 (28%), Positives = 206/478 (43%), Gaps = 137/478 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ GK IH L + +L V N+L+ YA+ L+ A F + ++++SW AM+
Sbjct: 465 LEKGKWIHSL-LTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVG 523
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-------- 275
+ +Q G AL F ++ + PN ++ + VL AC +
Sbjct: 524 VH------------SQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAAKL 571
Query: 276 -------KGF------------KLGK-----EIHGY----VLRHHIQLSTGV-------- 299
GF LGK E+ + +++ + +T +
Sbjct: 572 VQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQVMAVKNQVSWNTAIAANAQHGN 631
Query: 300 ---GIAL---ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G+ L + ++G+ TGS ++ G + +G+ YF M +Y E
Sbjct: 632 GVRGVELFQTMQLEGIDTGSVTLIGVLSSCSHAGLVA--QGYSYFLNMHVDYGFPAEAEH 689
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP--------------------------C 387
Y C++DLL+RAG + F+K++PF S P
Sbjct: 690 YSCVIDLLSRAGWLEHAEEFVKRLPFGDQSVFPWITLLCGCKLHGDLERGGRATQRILGL 749
Query: 388 NPDIA-----------------EHAA--RHLFELEP-----LS----SGKVHSFIAGDTS 419
NP E AA + + EL P LS G++H F GDTS
Sbjct: 750 NPGSTGPYLVMHNLYAGAGKWPEAAAVRKSMVELGPKKEPGLSWIEVKGRIHEFRVGDTS 809
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPA--------------CGHSEKLALAFGLISTS 465
H +I +L RL E+K+ G++ I A C HSEKLA+AFGLIST+
Sbjct: 810 HPRSSEIHRELERLNEEMKRAGFVCDIKAVVYDLQAKEKESLLCQHSEKLAIAFGLISTA 869
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G PLR++KNLR+C DCHS TK++S REI++ D YRFHHF GACSC D+W
Sbjct: 870 AGEPLRIMKNLRVCSDCHSATKFISGLVG----REIVVRDAYRFHHFRGGACSCEDFW 923
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/427 (19%), Positives = 170/427 (39%), Gaps = 101/427 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+A + +C +L++L G ++H ++ G+E+ FLG +F+ +
Sbjct: 42 TFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEARAVFQGI 101
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------YKACSELKDHRVGKDVYD 119
+++V +WTS++G+ G+ +E +LF + +GV Y A H D
Sbjct: 102 QDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGHPWEVDTIR 161
Query: 120 YMISI--KFEGNACVKRPVLDMFIKCGRMEMASGEFE--------------------EKD 157
+ E + V V++ + KCG ++ A G F+ E+
Sbjct: 162 ARVEACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAHEQG 221
Query: 158 FSNLSLLKH--------------------------GKEIHPHHLKKDDL-ESDLLVNNSL 190
L L + + + H ++ ++D +V +L
Sbjct: 222 DEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTAL 281
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
++ Y K + A F +I+++ +VSWNAML A GF ++ A + F
Sbjct: 282 VNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDK------------AFKCF 329
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
M+ P+ I+ +L AC K HG ++ + + G GI + + +G
Sbjct: 330 REMLLVGELPSRITYVAILNACFLAAHLK-----HGDFVK-TLAVEGGCGIESVDVV-MG 382
Query: 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
T ++++MY RC + + ++ ++ +P++ + ++ L QF++
Sbjct: 383 T------AIMNMYSRC---KSPKSAFSSSLLLEQDRDQPSIMMWNTVLSLYVENEQFEEA 433
Query: 371 LNFMKKM 377
+ M
Sbjct: 434 FTIFRLM 440
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 28/161 (17%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFE 63
TV+ +F C +LE G +H+ L V + A LG +F+
Sbjct: 449 TVSLMTVFNACGSSASLEKGKWIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFD 508
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
M RNV SWT+M+G+++ LG E + +F ++ EG V AC L
Sbjct: 509 AMTTRNVISWTAMVGVHSQLGLNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPA 568
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154
K V + F GN V +L KCG +E + F+
Sbjct: 569 AKLVQACLSETGFFGNVEVANGLLCTLGKCGSLEEVANFFQ 609
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 73/371 (19%), Positives = 139/371 (37%), Gaps = 97/371 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLI----VCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
I R +LEL + V ++ CG +L + G+F+ + R+ W +M+ +
Sbjct: 160 IRARVEACGSLELDVIVATAVMNAYGKCG-DLDSAWGVFDGILVRDAAVWNAMISLLVAH 218
Query: 84 GYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGKDVYDYMISIKFEGNACVK 133
+E + LF + GV AC +D ++ + + + + V+
Sbjct: 219 EQGDEALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQ 278
Query: 134 RPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLK--------HGKEIH----------- 171
+++M+ K G+++ A FE E+D + + + H K
Sbjct: 279 TALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLLVGEL 338
Query: 172 ---------------PHHLKKDD------------LES-DLLVNNSLMDFYAKCRYLKVA 203
HLK D +ES D+++ ++M+ Y++C+ K A
Sbjct: 339 PSRITYVAILNACFLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSA 398
Query: 204 HCKFSKIKQKH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
++Q ++ WN +L+ Y + E A F M+ +
Sbjct: 399 FSSSLLLEQDRDQPSIMMWNTVLSLY------------VENEQFEEAFTIFRLMLLGGVT 446
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
+T+SL V AC + GK IH +L++ L + V N+L
Sbjct: 447 IDTVSLMTVFNACGSSASLEKGKWIH----------------SLLTESELTRKTPVQNAL 490
Query: 320 IDMYGRCGAIQ 330
+ MY R G+++
Sbjct: 491 VTMYARLGSLE 501
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 158/583 (27%), Positives = 229/583 (39%), Gaps = 159/583 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F PK N + + + V L L FE MPERN SWT+M+ Y G+ E
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKL--FEVMPERNEVSWTAMLVGYIQAGHVE 253
Query: 88 EIVNLFYLLID---------------EGVYKACSELKDHRVGKDVYDYMISIK-FEGNAC 131
+ LF + + G+ A + + +D + IK +E N
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313
Query: 132 VKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
+ + +M + R S + L++L +G+E+H L+ + D+ +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS-FDMDVFAVS 372
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y KC L A F + K +V WN+M ITG+ Q+G GE AL
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM------------ITGYAQHGLGEQALG 420
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M M P+ I+ G L AC+ K
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVK----------------------------- 451
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
EG F M ++ P E Y CMVDLL R+G +
Sbjct: 452 ------------------------EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
+ + +K MP EP + C N +IAE AA+ L ELEP ++G
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYT 547
Query: 409 ---------------------------------KVHSFIAGDT----SHSLVHKISEKLM 431
+VH F +GD H+ + +I EKL
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLD 607
Query: 432 RLYSE----------IKKIGYMKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
L E + I ++ + HSE+ A+A+GL+ G P+RV+KNLR+CG
Sbjct: 608 GLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K ++K REII+ D RFHHF DG CSC DYW
Sbjct: 668 DCHSAIKLIAKITS----REIILRDANRFHHFKDGFCSCRDYW 706
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 147/580 (25%), Positives = 230/580 (39%), Gaps = 176/580 (30%)
Query: 60 GMFEKMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F ++P N+FSW S++ G + +E + LF L + G
Sbjct: 45 SVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETG------------------ 86
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
Y + F L +K + A GE G ++H H LK D
Sbjct: 87 -YPVPNSF---------TLAFVLKACAIVTAFGE--------------GLQVHSHVLK-D 121
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
S L V SL++FY KC + A F ++ ++LV+W AM++G+A
Sbjct: 122 GFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHA------------ 169
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+ G + A+E F M + +QP+ ++L V++ACA +G +H Y+ ++ +
Sbjct: 170 RVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLE 229
Query: 299 VGIALISIQG------LGTGSFV---------WNSLIDMYGRCGAIQK------------ 331
+ AL+ + FV W+S+I + G Q
Sbjct: 230 LSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETE 289
Query: 332 ---------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+ G R++ +M E+ +EP++E Y C VDLL R+G ++
Sbjct: 290 VTPDHVTFLAVLSACAHGGLVSRGRRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEA 348
Query: 371 LNFMKKMPFEPSSAE------PCNP----DIAEHAARHLFELEPLSS------------- 407
M P++A C ++ E AR+L ELEPL++
Sbjct: 349 YRITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSL 408
Query: 408 ------------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
G VH F+ GD SH V + E + + +
Sbjct: 409 SQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRV 468
Query: 438 KKIGYMKRIP-----------ACG---HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
+ GY I C HSE+ A+A+GL+ T +RV+KNLR+C DCH
Sbjct: 469 RDSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCH 528
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK EREII+ D RFH F+ G CSC D+W
Sbjct: 529 EVIKIISKL----YEREIIVRDRVRFHKFIKGTCSCKDFW 564
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 168 KEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAG 224
+++H H L + L S + ++ F A + + A F++I ++ SWN+++ G
Sbjct: 5 RQLHAHILTRPLPLSSFAFALSKIVAFCALSPFGNINYARSVFAQIPHPNIFSWNSLIKG 64
Query: 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKE 283
Y+ +I ++ + F ++ +T PN+ +L+ VL ACA V F G +
Sbjct: 65 YS------QIHTLSK-----EPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQ 113
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
+H +VL+ G G+ FV SL++ YG+C I + FE M
Sbjct: 114 VHSHVLK----------------DGFGSSLFVQTSLVNFYGKCEEI--GFARKVFEEMPV 155
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + M+ AR G D+ + ++M
Sbjct: 156 R-----NLVAWTAMISGHARVGAVDEAMELFREM 184
>gi|296090683|emb|CBI41082.3| unnamed protein product [Vitis vinifera]
Length = 413
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 143/534 (26%), Positives = 220/534 (41%), Gaps = 161/534 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFL---------------------GMFEKMP 66
+ Q KLN + IQ+HA +I ++ F+ +F+++P
Sbjct: 3 LLQNATKLNQI---IQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIP 59
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+ F W +M+ Y +E ++LF+ + H+ + Y +S+
Sbjct: 60 SPDTFIWNTMIRAYLNSQNPQESMSLFFQM-------------RHQECIPIDSYSLSLVI 106
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
+ CGR+ KD N G+++H LK L SDL V
Sbjct: 107 QA--------------CGRL---------KDPGN------GQKLHTQVLKIG-LGSDLFV 136
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+L++ YAK +++A ++ + LVSWN M+ G+A GD
Sbjct: 137 ETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIHGHA------------SLGDS 184
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
AL F M ++ P+ +++ VL+AC V +GK IH + R+ I++ +G
Sbjct: 185 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLG--- 241
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
SL+DMY +CG I + W
Sbjct: 242 -------------TSLVDMYAKCGDIDNSLRW---------------------------- 260
Query: 364 AGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLV 423
D +N + M N +I + E++ VH F+AGD SH
Sbjct: 261 ----DKVVNVRRMMK---------NINIQKVPGSSSIEVD----NAVHEFVAGDQSHPES 303
Query: 424 HKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSP 469
KI L + + +K GY K HSEKLA+AFGL+ST+PGS
Sbjct: 304 KKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGST 363
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R++KNLR+C DCH K +S+ K R II+ D RFHHFV+G+CSC DYW
Sbjct: 364 IRIVKNLRVCDDCHIAIKLISRTYK----RRIIVRDRNRFHHFVNGSCSCKDYW 413
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 152/572 (26%), Positives = 245/572 (42%), Gaps = 144/572 (25%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG---- 60
++PD+ T+ + + C + G QVH ++ G + L G
Sbjct: 147 SSPDK--HTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDL 204
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F++MPER++ SW SM+ G Y+ + LF E++
Sbjct: 205 ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF------------REMQR------- 245
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
FE + + VL G + + G H L+K
Sbjct: 246 -------SFEPDGYTMQSVLSACAGLGSLSL------------------GTWAHAFLLRK 280
Query: 178 DDLES--DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
D++ D+LV NSL++ Y KC L++A F ++++ L SWNAM I
Sbjct: 281 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM------------IL 328
Query: 236 GFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH- 292
GF +G E A+ FF RM+ + +++PN+++ G+L AC G++ ++R +
Sbjct: 329 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 388
Query: 293 -----------IQLSTGVG-----IALISIQGLGTGSFVWNSLIDMYGRCGA-IQKNEGW 335
+ L G I ++ + + +W SL+D + GA ++ +E
Sbjct: 389 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEI 448
Query: 336 RYFEMMKKEYNMEPAME---QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ KE N Y + + A A +++D + ++K+ ++
Sbjct: 449 ARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND-VGIVRKL-------------MS 494
Query: 393 EHAARHLFELEPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---K 444
EH R EP S G H F AGDTSH +I ++L + ++ IGY+
Sbjct: 495 EHGIRK----EPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 550
Query: 445 RIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ P HSE+LA+AFGLI+ P +P+R+ KNLR+C DCH TK +SK
Sbjct: 551 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 610
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF DG+CSC DYW
Sbjct: 611 V----FNTEIIVRDRVRFHHFKDGSCSCLDYW 638
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 41/180 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISL 265
F I+ WN ++ A R+E A + +M++ + P+ +
Sbjct: 106 FDSIENHSSFMWNTLIRACAHDVSRKE-----------EAFMLYRKMLERGESSPDKHTF 154
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
VL ACA + GF GK++H +++H G G +V N LI +YG
Sbjct: 155 PFVLKACAYIFGFSEGKQVHCQIVKH----------------GFGGDVYVNNGLIHLYGS 198
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEP--AMEQYCCMVDLLARAGQFDDTLNFMKKM--PFEP 381
CG + ++ +K ++ P ++ + M+D L R G++D L ++M FEP
Sbjct: 199 CGCL---------DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP 249
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 152/572 (26%), Positives = 245/572 (42%), Gaps = 144/572 (25%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG---- 60
++PD+ T+ + + C + G QVH ++ G + L G
Sbjct: 138 SSPDK--HTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDL 195
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F++MPER++ SW SM+ G Y+ + LF E++
Sbjct: 196 ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF------------REMQR------- 236
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
FE + + VL G + + G H L+K
Sbjct: 237 -------SFEPDGYTMQSVLSACAGLGSLSL------------------GTWAHAFLLRK 271
Query: 178 DDLES--DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
D++ D+LV NSL++ Y KC L++A F ++++ L SWNAM I
Sbjct: 272 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM------------IL 319
Query: 236 GFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH- 292
GF +G E A+ FF RM+ + +++PN+++ G+L AC G++ ++R +
Sbjct: 320 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 379
Query: 293 -----------IQLSTGVG-----IALISIQGLGTGSFVWNSLIDMYGRCGA-IQKNEGW 335
+ L G I ++ + + +W SL+D + GA ++ +E
Sbjct: 380 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEI 439
Query: 336 RYFEMMKKEYNMEPAME---QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ KE N Y + + A A +++D + ++K+ ++
Sbjct: 440 ARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND-VGIVRKL-------------MS 485
Query: 393 EHAARHLFELEPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---K 444
EH R EP S G H F AGDTSH +I ++L + ++ IGY+
Sbjct: 486 EHGIRK----EPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 541
Query: 445 RIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ P HSE+LA+AFGLI+ P +P+R+ KNLR+C DCH TK +SK
Sbjct: 542 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 601
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF DG+CSC DYW
Sbjct: 602 V----FNTEIIVRDRVRFHHFKDGSCSCLDYW 629
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 41/180 (22%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISL 265
F I+ WN ++ A R+E A + +M++ + P+ +
Sbjct: 97 FDSIENHSSFMWNTLIRACAHDVSRKE-----------EAFMLYRKMLERGESSPDKHTF 145
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
VL ACA + GF GK++H +++H G G +V N LI +YG
Sbjct: 146 PFVLKACAYIFGFSEGKQVHCQIVKH----------------GFGGDVYVNNGLIHLYGS 189
Query: 326 CGAIQKNEGWRYFEMMKKEYNMEP--AMEQYCCMVDLLARAGQFDDTLNFMKKM--PFEP 381
CG + ++ +K ++ P ++ + M+D L R G++D L ++M FEP
Sbjct: 190 CGCL---------DLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP 240
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 152/572 (26%), Positives = 245/572 (42%), Gaps = 144/572 (25%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG---- 60
++PD+ T+ + + C + G QVH ++ G + L G
Sbjct: 204 SSPDK--HTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDL 261
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F++MPER++ SW SM+ G Y+ + LF E++
Sbjct: 262 ARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLF------------REMQR------- 302
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
FE + + VL G + + G H L+K
Sbjct: 303 -------SFEPDGYTMQSVLSACAGLGSLSL------------------GTWAHAFLLRK 337
Query: 178 DDLES--DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
D++ D+LV NSL++ Y KC L++A F ++++ L SWNAM I
Sbjct: 338 CDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM------------IL 385
Query: 236 GFTQYGDGETALEFFSRMI--QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH- 292
GF +G E A+ FF RM+ + +++PN+++ G+L AC G++ ++R +
Sbjct: 386 GFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC 445
Query: 293 -----------IQLSTGVG-----IALISIQGLGTGSFVWNSLIDMYGRCGA-IQKNEGW 335
+ L G I ++ + + +W SL+D + GA ++ +E
Sbjct: 446 IEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEI 505
Query: 336 RYFEMMKKEYNMEPAME---QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+ KE N Y + + A A +++D + ++K+ ++
Sbjct: 506 ARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWND-VGIVRKL-------------MS 551
Query: 393 EHAARHLFELEPLSS-----GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---K 444
EH R EP S G H F AGDTSH +I ++L + ++ IGY+
Sbjct: 552 EHGIRK----EPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRS 607
Query: 445 RIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
+ P HSE+LA+AFGLI+ P +P+R+ KNLR+C DCH TK +SK
Sbjct: 608 QAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISK 667
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EII+ D RFHHF DG+CSC DYW
Sbjct: 668 V----FNTEIIVRDRVRFHHFKDGSCSCLDYW 695
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 109/271 (40%), Gaps = 46/271 (16%)
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS---NLSLLKHGKEIHPHHLKK 177
+++I+F +K V +G ++ FS S + K++H L+
Sbjct: 72 LLAIRFAIRFGLKTLVFSRIPNLKYGSSTAGNHHQRIFSLAETCSDMSQLKQLHAFTLRT 131
Query: 178 DDLE--SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
E + L + ++ + + A F I+ WN ++ A R+E
Sbjct: 132 TYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKE-- 189
Query: 236 GFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
A + +M++ + P+ + VL ACA + GF GK++H +++H
Sbjct: 190 ---------EAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKH--- 237
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP--AME 352
G G +V N LI +YG CG + ++ +K ++ P ++
Sbjct: 238 -------------GFGGDVYVNNGLIHLYGSCGCL---------DLARKVFDEMPERSLV 275
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKM--PFEP 381
+ M+D L R G++D L ++M FEP
Sbjct: 276 SWNSMIDALVRFGEYDSALQLFREMQRSFEP 306
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 156/640 (24%), Positives = 243/640 (37%), Gaps = 208/640 (32%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y C L G QVHA ++ G +L + + MP
Sbjct: 38 YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ERNV SWT+M+ GY +
Sbjct: 98 ERNVVSWTAMIS-----GYSQN-------------------------------------- 114
Query: 127 EGNACVKRPV--LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK-------K 177
+RP D+FI R EF S L+ + IH H +K K
Sbjct: 115 ------ERPAEAWDLFIMMLRAGCEPNEFTLA--SVLTSCTGSQGIHQHQIKQVHAFAIK 166
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ E + V +SL+D YA+ ++ A F + + +VS+ +L+GY
Sbjct: 167 KNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGY------------ 214
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
T+ G E AL F ++ MQ N ++ S +L A + + GK++HG +LR +
Sbjct: 215 TRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFM 274
Query: 298 GVGIALISI--------------QGLGTGSFV-WNSLIDMYGRCGAIQK----------- 331
+ +LI + + S V WN+++ YGR G +
Sbjct: 275 ALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK 334
Query: 332 ---------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
+EG F+ + KE + + Y C++DLL R+GQ +
Sbjct: 335 VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKA 394
Query: 371 LNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSGK----------- 409
L ++KMPF+P+ A N + E A+ LF++EP ++G
Sbjct: 395 LLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAA 454
Query: 410 --------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEI 437
+H+F + + H I+ K+ +Y+ I
Sbjct: 455 RMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAI 514
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K G++ + GHSEKLA+ FGL+ST ++V+KNLR+C DCH
Sbjct: 515 KAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCH 574
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ K+VSK REI + D RFH +GAC+CGDYW
Sbjct: 575 NFAKFVSKVYG----REISLRDKNRFHLITEGACTCGDYW 610
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 22/97 (22%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM--------------------F 62
VT++++ L++++ G QVH ++ EL F+ + F
Sbjct: 240 VTFSVLLNALSGLSSMDYGKQVHG--LILRRELPFFMALQNSLIDMYSKCGKLLYSRRVF 297
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99
+ MPER+V SW +M+ Y G E+V LF + D+
Sbjct: 298 DNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK 334
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 138/538 (25%), Positives = 214/538 (39%), Gaps = 153/538 (28%)
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V +ACS R G V ++I + F + V+ ++ ++ C R+E A F+E S
Sbjct: 139 VLQACSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSR 198
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
D++ NS++ + + + VA F ++ +K ++SW
Sbjct: 199 ----------------------DVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGT 236
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
+ I+G Q G+ E AL++F + + ++PN L +LAA AQ+ +
Sbjct: 237 I------------ISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEY 284
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSLIDMYGR 325
GK IH ++ +G AL+ + + F+ WN +I
Sbjct: 285 GKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLAT 344
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G Q+ +EG +F++M Y +EP ME
Sbjct: 345 HGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEME 404
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPCNP----DIAEHAARHLFEL 402
Y CMVDLL+RAG D + + +MP P S C ++ E L ++
Sbjct: 405 HYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQM 464
Query: 403 EPL-------------------------------------------SSGKVHSFIAGDTS 419
+P + G+VH F+AGD
Sbjct: 465 DPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKE 524
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTS 465
H +I + L + I GY + + HSE+LA+AFGL+ T
Sbjct: 525 HERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTK 584
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G +R+IKNLR+CGDCH +K +S EREII+ D RFHHF G CSC DYW
Sbjct: 585 DGDCIRIIKNLRVCGDCHEVSKIISLV----FEREIIVRDGSRFHHFKKGICSCQDYW 638
>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 491
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 151/594 (25%), Positives = 240/594 (40%), Gaps = 186/594 (31%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER 68
L + M + D T+ +A + L ++++G Q+HA LI+ G+ L F+G
Sbjct: 5 LFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMG-------- 56
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG 128
+++ MY+ G + +F D+ IS
Sbjct: 57 -----NALIDMYSKCGMLDAAKTIFANKSDKTA--------------------ISWTALI 91
Query: 129 NACVKR----PVLDMFIKCGRM----EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
CV+ L +F R + A+ K S+L ++ G+++H + L
Sbjct: 92 TGCVQNGQHEEALQLFCNMRRAGLSPDRATCSSIIKSSSSLGVIGIGRQLHAY-LTTSGH 150
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
S + ++L+D YAKC L A F+++ +K+ ++WNA+++ YA QY
Sbjct: 151 MSSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYA------------QY 198
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A+ F M+ P+ ++ VLAAC+
Sbjct: 199 GQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSH-------------------------- 232
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
GL E +YF++M+ +M P E Y C++D
Sbjct: 233 ------NGLA---------------------EECMKYFDLMRYYNSMSPWKEHYSCVIDA 265
Query: 361 LARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAEHAARHLFELEPLSS 407
L RAG FD + +MPFE A+P N D+A AA +LF + P +
Sbjct: 266 LGRAGCFDKIQKVLDEMPFE---ADPVIWSSILHSCRIYGNQDLATVAAENLFTMVPTDA 322
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
K++ F + D ++ ++
Sbjct: 323 TAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSWVEIKQKIYMFSSNDHTNPMID 382
Query: 425 KISEKLMRLYSEIKKIGYMKRIPACG---------------HSEKLALAFGLISTSPGSP 469
+I E+L RLY E+ K GY + +C HSE+LA+AF LI+T PG+P
Sbjct: 383 EIKEELERLYEEMDKQGY-EPDTSCALHMVDNKQKLESLKYHSERLAIAFALINTPPGTP 441
Query: 470 LRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ V+KNL C DCH+ K +SK R+II+ D+ RFHHF DG CSCGDYW
Sbjct: 442 ITVMKNLSACLDCHAAIKMISKIVN----RDIIVRDSRRFHHFKDGFCSCGDYW 491
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 16/84 (19%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL+ F M +T+ + +L+ + K+G++IH ++
Sbjct: 2 ALQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLI---------------- 45
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
+ GL F+ N+LIDMY +CG +
Sbjct: 46 LLGLTLEDFMGNALIDMYSKCGML 69
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 196/477 (41%), Gaps = 135/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+++H +K ++ ++ V +L++ Y +C + A C F +I + +V +NAM+
Sbjct: 147 LEEGRQLHCLSMKLG-VDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMIT 205
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL F M +++PN I+L VL++CA + LGK
Sbjct: 206 GYARRNRPNE------------ALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKW 253
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
IH Y +H V ALI + GS W+++I Y G
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFA-KCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHG 312
Query: 328 AIQKN---------------------------------EGWRYFEMMKKEYNMEPAMEQY 354
+ + EG YF M E+ + P+++ Y
Sbjct: 313 QAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHY 372
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
MVDLL RAG +D F+ K+P P+ + N ++AE + + EL+
Sbjct: 373 GSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDD 432
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G VH F +GD S
Sbjct: 433 SHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 492
Query: 422 LVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSP 466
K+ L + E+K GY+ K I HSEKLA+AFGL++T P
Sbjct: 493 ATTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPP 552
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +RV+KNLR+C DCHS K +S R++++ D RFHHF DG CSC D+W
Sbjct: 553 GTTIRVVKNLRVCRDCHSAAKLISLIFG----RKVVLRDVQRFHHFEDGKCSCRDFW 605
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 206/471 (43%), Gaps = 134/471 (28%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+IH H ++K + +D L+ +L+D YAK + A F ++ ++ + SWNA+++G+A G
Sbjct: 126 QIHTHIVRKGFI-ADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQG 184
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
E AL F RM +PN IS+ G L+ACAQ+ FK G++IHGY+
Sbjct: 185 SKPTE------------ALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYI 232
Query: 289 LRHHIQLSTGVGIALISIQ---GLGTGSFV-------------WNSLI---DMYGR-CGA 328
++ V +I + G +++ WN++I M+G C A
Sbjct: 233 KVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKA 292
Query: 329 IQ-----------------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
++ EG+R F M+ ++P ++ Y +VD
Sbjct: 293 LELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMEN-CGVKPNVKHYGSVVD 351
Query: 360 LLARAGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFEL------- 402
LL RAG+ + + + MP P +S N +IAE +R L E+
Sbjct: 352 LLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGD 411
Query: 403 ---------------------EPLSS---------------GKVHSFIAGDTSHSLVHKI 426
E + + G +H F D SH +I
Sbjct: 412 FVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREI 471
Query: 427 SEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRV 472
KL + +K+ GY+ HSEKLA+AFGLISTS G+P++V
Sbjct: 472 YAKLDEIRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQV 531
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
IKNLR+CGDCH K +SK +REII+ D RFH F +G CSC DYW
Sbjct: 532 IKNLRICGDCHFVIKLISKI----YDREIIVRDRVRFHRFKEGFCSCRDYW 578
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNS-LMDFYA-KCRYLKVAHCKFSKIKQKHLVSWNAM 221
L H K++H H + S L++ YA L A FS+I+ WNA+
Sbjct: 17 LPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAI 76
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I GF Q + A ++ MI + + ++ S VL ACA+V
Sbjct: 77 ------------IRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLES 124
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
+IH +++R +G + + +L+D+Y + G I E + EM+
Sbjct: 125 IQIHTHIVR----------------KGFIADALLGTTLLDVYAKVGEIDSAEK-VFDEMV 167
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP---FEPS 382
K++ + + ++ A+ + + L+ K+M F+P+
Sbjct: 168 KRD------IASWNALISGFAQGSKPTEALSLFKRMEIDGFKPN 205
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 184/406 (45%), Gaps = 96/406 (23%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E +L+ NS++ + KC ++ A FS++ + +VSWN+MLA YA Q
Sbjct: 124 ERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYA------------QC 171
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G AL F +M ++P+ ++ +L+ACA + G +H Y+ + I++++ VG
Sbjct: 172 GKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 231
Query: 301 IALISIQG------LGTGSF---------VWNSLIDMYGRCGAIQK-------------- 331
AL+ + L T F WN++I G +++
Sbjct: 232 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVE 291
Query: 332 -------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+EG + + M Y +EP +E Y C++DLLARAG ++ +
Sbjct: 292 PNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAME 351
Query: 373 FMKKMPFEPSSAEPC-------------NPDIAEHAARHLFELEPLSSGKVHSFI--AGD 417
+ MP EP+ PC N ++ E + L L+P SG++ S I + D
Sbjct: 352 LIGTMPMEPN---PCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGRLKSAIGXSAD 408
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
T + L+ E K HSEKLA+A+GL+ +R++KNLR
Sbjct: 409 TGNXLLDMEEED--------------KEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLR 454
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK +SK EII+ D RFHHF DG CSC D+W
Sbjct: 455 VCRDCHHVTKLISKVYG----GEIIVRDRNRFHHFEDGECSCLDFW 496
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 63/309 (20%)
Query: 48 LIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------ 101
+ CG AF G+F +MP R+V SW SM+ Y G E + LF + GV
Sbjct: 137 FVKCGNVEDAF-GLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEAT 195
Query: 102 ----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---E 154
AC+ L G ++ Y+ + E N+ V ++DM+ KCG++ +A+ F E
Sbjct: 196 VVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAME 255
Query: 155 EKD-------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNN-SLMDFYAKCRYLKVAHCK 206
KD + +++L H KE L K+ E+ + N+ + + + C +H
Sbjct: 256 SKDVLAWNTIIAGMAILGHVKE--AQQLFKEMKEAGVEPNDITFVAMLSAC-----SHAG 308
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREE----ITGFTQYGDGETALEFFSRMIQTDMQPNT 262
QK L + M + Y + E I + G E A+E M M+PN
Sbjct: 309 MVDEGQKLL---DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNP 362
Query: 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---------GLGTGS 313
+L +L C IHG + +L VG LI++Q +G +
Sbjct: 363 CALGALLGGC----------RIHG-----NFELGEMVGKRLINLQPCQSGRLKSAIGXSA 407
Query: 314 FVWNSLIDM 322
N L+DM
Sbjct: 408 DTGNXLLDM 416
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 154/649 (23%), Positives = 254/649 (39%), Gaps = 188/649 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMF-------------E 63
+ T+ + + C K + G Q+H ++ G +L + + M+ +
Sbjct: 103 SYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXD 162
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDV 117
K R+V S+T+++ Y G E +F + + V +E +++ ++
Sbjct: 163 KSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALEL 222
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ M+ + VL + G +E+ G+++H +
Sbjct: 223 FKKMMKTNVRPDESTMVTVLSACAQSGSIEL------------------GRQVHSW-IND 263
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+L + N+L+D Y+KC L+ A F + K ++SWN ++ GY +E
Sbjct: 264 HGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKE---- 319
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQL 295
AL F M+++ +PN +++ +L+ACA + +G+ IH Y+ + +
Sbjct: 320 --------ALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTN 371
Query: 296 STGVGIALISIQG---------------LGTGSFVWNSLI---DMYGRCGA-------IQ 330
++ + +LI + L WN++I M+GR A ++
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431
Query: 331 KNE-----------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
KN G F M ++Y + P +E Y CM+DL +G F
Sbjct: 432 KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLF 491
Query: 368 DDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK-------- 409
+ + M EP C N ++ E A++L ++EP + G
Sbjct: 492 KEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIY 551
Query: 410 -----------------------------------VHSFIAGDTSH-------------- 420
VH FI GD H
Sbjct: 552 ATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEME 611
Query: 421 ------SLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
V SE L + E K+ G ++ HSEKLA+AFGLIST PG+ L ++K
Sbjct: 612 VLLEEAGFVPDTSEVLQEMEEEWKE-GALRH-----HSEKLAIAFGLISTKPGTKLTIVK 665
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 666 NLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFRDGECSCNDYW 710
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 141/334 (42%), Gaps = 85/334 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV-----------ELCAFLGMFEKMP---------- 66
+ C L +L + +HA +I G+ E C F+ +P
Sbjct: 8 LLHXCKTLQSLRI---IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQ 64
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKDHRVGKD 116
E + W +M + + + L+ ++ G+ K+C++ + G+
Sbjct: 65 EPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQ 124
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176
++ ++ F+ + + ++ M+++ GR+E A ++
Sbjct: 125 LHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSS------------------- 165
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
D++ +L+ YA ++ AH F +I K +VSWNA ++GYA
Sbjct: 166 ----HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYA---------- 211
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+ G+ + ALE F +M++T+++P+ ++ VL+ACAQ +LG+++H ++ H
Sbjct: 212 --ETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDH----- 264
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
G G + N+LID+Y +CG ++
Sbjct: 265 -----------GFGXNLKIVNALIDLYSKCGELE 287
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 152/600 (25%), Positives = 236/600 (39%), Gaps = 210/600 (35%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL------------ 59
PD T T++ + + C + +VH +I G V LC L
Sbjct: 497 ARPD--TYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIET 554
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+FE+MP R++ SW SM+ Y G +EE + ++ +++ VG D
Sbjct: 555 AHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY------------DQMRISNVGFDG 602
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ ++S+ ++C L M ++ R +GE
Sbjct: 603 FT-LVSLL---SSCAHVGALHMGVQMHRF---AGERR----------------------- 632
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L ++ V N+L+D YAKC L A F+ + ++ + +WN+M+ GY +
Sbjct: 633 --LVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGV---------- 680
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
+G G+ A+ FF M+ ++PN+I+ G+L C+
Sbjct: 681 --HGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH----------------------- 715
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
QGL EG +YF MM E+N++P ++ Y CM
Sbjct: 716 ---------QGL---------------------VKEGVQYFHMMSSEFNLKPGIKHYGCM 745
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAEHAARHLFELEP 404
VDL RAG+ + L ++ PS +P N +I E A R+L +L
Sbjct: 746 VDLFGRAGKLKEALEVIRS---SPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGS 802
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
L +G +VH F+ D SH
Sbjct: 803 LGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHP 862
Query: 422 LVHKISEKLMRLYSEIKKIGY------MKRIPACG------------HSEKLALAFGLIS 463
+I KL + +GY + P HSEKLA+A+GL
Sbjct: 863 DSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAYGLAR 922
Query: 464 TSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
T G+ L ++KNLR+C DCH+ TK+VSKA +REII+ D RFHHF G CSC ++W
Sbjct: 923 TPEGTSLLIVKNLRVCRDCHNFTKFVSKA----FDREIIVRDRVRFHHFRGGHCSCKEFW 978
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVH---------AHLIV--------- 50
+ M ++N T + C + L +G+Q+H ++ V
Sbjct: 589 MYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYA 648
Query: 51 -CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
CG L + L +F MP+R+VF+W SM+ Y V G +E + F ++ GV
Sbjct: 649 KCG-SLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGV 699
>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
Length = 588
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 139/561 (24%), Positives = 230/561 (40%), Gaps = 159/561 (28%)
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNL 161
C E + R G+ V+ M++ + + ++ M+ +CG +E A + E++ +
Sbjct: 45 CVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSW 104
Query: 162 SLLKHG-------------------------KEIHPHHLKKDDLESDLLVNNSLMDFYAK 196
+ + G K++H +K + E + V +SL+D YAK
Sbjct: 105 TAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTN-FELHMFVGSSLLDMYAK 163
Query: 197 CRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256
++ A F + + +VS+ A+L+GY TQ G E AL+ F +
Sbjct: 164 SENIQEARRVFDMLPARDVVSYTAILSGY------------TQLGLDEEALDLFRLLYNE 211
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------- 306
MQ N ++ + +L A + + GK++HG +LR + + +LI +
Sbjct: 212 GMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYS 271
Query: 307 ----QGLGTGSFV-WNSLIDMYGRCGAIQK------------------------------ 331
+ S V WN+++ YGR G +
Sbjct: 272 RRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEVKPDSVTLLAVLSGYSHGG 331
Query: 332 --NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----- 384
+EG F+ + KE + E Y C++DLL R+GQ LN ++KMPF+P+ A
Sbjct: 332 LVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSL 391
Query: 385 -EPC----NPDIAEHAARHLFELEPLSSGK------------------------------ 409
C N + E A+ L ++EP ++G
Sbjct: 392 LGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVI 451
Query: 410 -------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------- 449
+H+F + + H I+ K+ +Y IK G++ +
Sbjct: 452 KEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSCVLHDVDDE 511
Query: 450 -------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
GHSEKLA+ FGL+ST ++V+KNLR+C DCH+ K+VSK REI
Sbjct: 512 QKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYG----REIS 567
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFH +GAC+CGDYW
Sbjct: 568 LRDKNRFHLITEGACTCGDYW 588
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 40/170 (23%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM--------------------F 62
VT+ + L++++ G QVH ++ EL F+ + F
Sbjct: 218 VTFTALLNALSGLSSMDYGKQVHG--LILRRELPFFMALQNSLIDMYSKCGKLLYSRRVF 275
Query: 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---------GVYKACSELKDHRV 113
+ MPER+V SW +M+ Y G E+V LF + DE V S
Sbjct: 276 DSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEVKPDSVTLLAVLSGYSHGGLVDE 335
Query: 114 GKDVYDYMIS-----IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
G D++D+++ + E C V+D+ + G+++ A E+ F
Sbjct: 336 GLDMFDHIVKEQSTLLNTEHYGC----VIDLLGRSGQLQKALNLIEKMPF 381
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 168/676 (24%), Positives = 257/676 (38%), Gaps = 187/676 (27%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGM----------- 61
+D +P E + P + L VH+ +I+ + + LG+
Sbjct: 33 LDQKSPQETVFLLGQVLDTYPDIRTLR---TVHSRIILEDLRCNSSLGVKLMRAYASLKD 89
Query: 62 -------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKA 104
F+++PERNV M+ Y G+Y E V +F + V KA
Sbjct: 90 VASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKA 149
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNL 161
CS +G+ ++ + V ++ M+ KCG + A E +D +
Sbjct: 150 CSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW 209
Query: 162 SLLKHGKEIHPHHLKKDD------------LESDLLVNNSLMDFYAKCRYLKVAHCK--F 207
+ L G + + + DD + D SL+ + V + K F
Sbjct: 210 NSLVVG---YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMF 266
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
K+ +K LVSWN M+ Y E A+E +SRM +P+ +S++
Sbjct: 267 FKMGKKSLVSWNVMIGVYMKNAMPVE------------AVELYSRMEADGFEPDAVSITS 314
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGS 313
VL AC LGK+IHGY+ R + + + ALI + + + +
Sbjct: 315 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRD 374
Query: 314 FV-WNSLIDMYG----RCGAIQK-----------------------------NEGWRYFE 339
V W ++I YG C A+ EG F+
Sbjct: 375 VVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 434
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
+M Y + P +E CMVDLL RAG+ + F++ M EP+ C +
Sbjct: 435 LMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDT 494
Query: 390 DIAEHAARHLFELEPLSSGK---------------------------------------- 409
DI AA LF+L P SG
Sbjct: 495 DIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV 554
Query: 410 ---VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHS 452
+H+F+ GD SH +I +L L ++K++GY+ K HS
Sbjct: 555 NRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHS 614
Query: 453 EKLALAFGLIST-----SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNY 507
EKLA+ F L++T + +R+ KNLR+CGDCH K +S+ REII+ D
Sbjct: 615 EKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQIT----SREIIIRDTN 670
Query: 508 RFHHFVDGACSCGDYW 523
RFH F G CSCGDYW
Sbjct: 671 RFHVFRFGVCSCGDYW 686
>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 150/606 (24%), Positives = 242/606 (39%), Gaps = 176/606 (29%)
Query: 54 ELCAFLGMFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV---------- 101
E+ +F+++P +++ WT+++ ++ G + LF + + V
Sbjct: 58 EIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCL 117
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
+ C++L+D R G+ + + + F + V ++DM+ KCG + F+ +
Sbjct: 118 FGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALE---- 173
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E ++ ++D K LK F ++ ++++V+W M
Sbjct: 174 -------------------EKSVVSWTVVLDTLVKWEGLKRGREVFDEMPERNVVAWTLM 214
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKL 280
+AGY GF E+ LE + M+ + N ++L +L+ACAQ +
Sbjct: 215 VAGYLGAGFTREV------------LELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVI 262
Query: 281 GKEIHGYVLRHHIQLS-------TGVGIALISIQG---------------LGTGSFVWNS 318
G+ +H Y L+ + + VG AL+ + WN+
Sbjct: 263 GRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVVTWNA 322
Query: 319 L-------------IDMY------------------GRCGAI-QKNEGWRYFEMMKKEYN 346
L IDM+ C + +EGWR F ++ Y
Sbjct: 323 LFSGLAMHGKGRMVIDMFPEMVREVKPDDLTFTALLSACSHLGMVDEGWRCFHSLQF-YG 381
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAA 396
+EP ++ Y CMVD+L RAG+ ++ M++MP P+ C+ +IAE
Sbjct: 382 LEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEIAERIK 441
Query: 397 RHLFELEP---------------------------------------LSS----GKVHSF 413
R L ++ P LSS VH F
Sbjct: 442 RELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVNDSVHRF 501
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA----------------CGHSEKLAL 457
+GD SH ++ KL + I+ GY+ I C HSEKLA+
Sbjct: 502 SSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHSEKLAV 561
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
FGL+ T P +PL V KNLR+C DCHS K VSK +REII+ D RFH F G+C
Sbjct: 562 CFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKV----YDREIIIRDRNRFHQFKGGSC 617
Query: 518 SCGDYW 523
SC DYW
Sbjct: 618 SCSDYW 623
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 44/223 (19%)
Query: 162 SLLKHGKEIHP----HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHL 215
S L G+E+H LKK ++N+L FYA + A F +I K
Sbjct: 20 SFLHPGRELHAVLTTSGLKKAPRS---YLSNALFQFYASSGEIATAQKLFDEIPLSDKDN 76
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V W +L + F+++G +++ F M + ++ + +SL + CA++
Sbjct: 77 VDWTTLL------------SSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKL 124
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ + G++ HG ++ G T V N+L+DMYG+CG + +E
Sbjct: 125 EDLRFGEQGHGVAVK----------------MGFLTSVKVCNALMDMYGKCGFV--SEVK 166
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
R F+ ++ E ++ + ++D L + +MP
Sbjct: 167 RIFQALE-----EKSVVSWTVVLDTLVKWEGLKRGREVFDEMP 204
>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
Length = 771
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 152/564 (26%), Positives = 227/564 (40%), Gaps = 178/564 (31%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV------------YKACSEL 108
M + +V +W +++ Y+ G +E+ LF + V Y C +
Sbjct: 285 MLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRV 344
Query: 109 KDHRVGKDVYDYMISIKF---------EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
D R D S+ + GNA +++F +C +E A E D +
Sbjct: 345 DDARRVLDAMPVRTSVSWTAMIAAYAQNGNAA---EAINLF-QCMDLEGA----EPSDIT 396
Query: 160 NLSL---------LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210
+S+ L GK IH L++ N+++ Y KC L++A F +
Sbjct: 397 LISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESV 456
Query: 211 --KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSG 267
+ + +V+W AM+ YA Q G GE A+E F M I +PN ++
Sbjct: 457 PLRTRSVVTWTAMIRAYA------------QNGVGEEAIELFQEMVIDGGTEPNRVTFLS 504
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
VL+AC+ LG W
Sbjct: 505 VLSACSH----------------------------------LGQLEQAWE---------- 520
Query: 328 AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN-FMKKMPFEPS---- 382
+F M ++ + PA + YCC+VDLL RAG+ + ++ FE
Sbjct: 521 ---------HFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCW 571
Query: 383 ----SAEPCNPDI--AEHAARHLFELEP-----------------------------LSS 407
SA N D+ ++ AA+ + ELEP SS
Sbjct: 572 IAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSS 631
Query: 408 G--------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------- 443
G +VH F+ D SH +I +L RL+ EIK+ GY+
Sbjct: 632 GVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDV 691
Query: 444 ---KRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
K+ G HSE+LA+A G+IST PG+ LRV+KNLR+C DCH+ TK++S+ R
Sbjct: 692 DEEKKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVG----R 747
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
+II+ D RFHHF DG CSCGDYW
Sbjct: 748 QIIVRDTSRFHHFKDGVCSCGDYW 771
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 127/334 (38%), Gaps = 79/334 (23%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+ MP + F+W M+ Y + ++ LF+ +I G+DV
Sbjct: 94 ALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMIS---------------GRDVVS 138
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---DFSNLSLLKHGKEIHPHHLK 176
+ I ++ + + R+E AS F D + + G + H +
Sbjct: 139 WAI-------------LVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAE 185
Query: 177 KDDL--------ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+L + D N+++ Y K + +A F++IK ++ SW+ +L YA
Sbjct: 186 AQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYA-- 243
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
Q G + A + F RM Q D T +++ VL+ +++G
Sbjct: 244 ----------QNGHLDLAKKSFDRMPQRDSIAFT-AMTAVLSDQGELRG----------- 281
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
R ++ + V + WN+L++ Y R G + +E R F M E+
Sbjct: 282 AREMLRYLSAVDV------------IAWNALLEGYSRTGDL--DEVRRLFSAM--EHRTV 325
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
+V+L + G+ DD + MP S
Sbjct: 326 ATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTS 359
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 32/132 (24%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHL---------------IVCGV 53
L Q MDL + +T + C L L LG ++HA + ++
Sbjct: 381 LFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMY 440
Query: 54 ELCAFLGM----FEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFY-LLIDEG------ 100
C L + FE +P R+V +WT+M+ Y G EE + LF ++ID G
Sbjct: 441 GKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRV 500
Query: 101 ----VYKACSEL 108
V ACS L
Sbjct: 501 TFLSVLSACSHL 512
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 155/615 (25%), Positives = 245/615 (39%), Gaps = 165/615 (26%)
Query: 28 IFQRCPKLNNLELGIQVH--------------AHLIV-----CGVELCAFLGMFEKMPER 68
+ +RC LE G ++H ++L+V CG L +F+ M +
Sbjct: 47 LIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCG-SLVEAKRVFDAMQHK 105
Query: 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVY 118
NVFSWT +M + G E + LF+ + EG +C K G++++
Sbjct: 106 NVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIH 165
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD------------------ 157
S + + +++M+ KCG + A F EK+
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELAD 225
Query: 158 ---------------------------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
++++ L+ GK +H + L++ ++V N+L
Sbjct: 226 EALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVR-IVYAGLDTSIVVGNTL 284
Query: 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250
++ Y KC A F + +K++VSWNAMLA Y Q G AL F
Sbjct: 285 VNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYG------------QNGRSREALALF 332
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
M ++PN I+ +L C+ FK + H +++ GI +
Sbjct: 333 DSMDLEGVRPNDITFVTILYCCSHSGKFK-------DAVSHFVEMRQDFGITPREVH--- 382
Query: 311 TGSFVWNSLIDMYGRCGAIQKNEG-------------WRYF--------------EMMKK 343
+ LIDM GR G +++ E W ++
Sbjct: 383 -----FGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEE 437
Query: 344 EYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFEL 402
+ EP Y + +L A ++D+ K+M + + A R E+
Sbjct: 438 AFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRME---------QAGVRKQAGRSWIEI 488
Query: 403 EPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPA 448
+ +VH F+AGD+ H +I + L RL SE++ GY K
Sbjct: 489 DK----QVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVL 544
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
HSEKLA+AFG+ ST P +PL ++KNLR+C DCHS K++S E R I + D+ R
Sbjct: 545 FYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEG----RRITVRDSNR 600
Query: 509 FHHFVDGACSCGDYW 523
FHHF G CSCGDYW
Sbjct: 601 FHHFDRGECSCGDYW 615
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 78/382 (20%), Positives = 148/382 (38%), Gaps = 110/382 (28%)
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
E + + C+ K G+ ++ +M S + + ++DM+ KCG + A F+
Sbjct: 45 EQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQH 104
Query: 159 SN------------------------------------LSLLK------------HGKEI 170
N ++LLK G+EI
Sbjct: 105 KNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREI 164
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H ++SDL+ N++++ Y KC + A F+++ +K+++SW+ M+A
Sbjct: 165 HS-AAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIA------- 216
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
F Q + AL FF M Q M+ + I+ VL A V +LGK +H ++
Sbjct: 217 -----AFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVY 271
Query: 291 HHIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQKN--- 332
+ S VG L+++ G + WN+++ YG+ G ++
Sbjct: 272 AGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALAL 331
Query: 333 ------EGWR------------------------YFEMMKKEYNMEPAMEQYCCMVDLLA 362
EG R +F M++++ + P + C++D+L
Sbjct: 332 FDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLG 391
Query: 363 RAGQFDDTLNFMKKMPFEPSSA 384
R+G+ ++ ++ MP P+ A
Sbjct: 392 RSGKLEEAEELIQAMPV-PADA 412
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
+TY + + LELG +H ++ G++ +G +F+
Sbjct: 244 ITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDS 303
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
M E+NV SW +M+ Y G E + LF + EGV
Sbjct: 304 MVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGV 340
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 143/588 (24%), Positives = 245/588 (41%), Gaps = 165/588 (28%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F+ NV+ +T+++ + G Y + + L+ ++ + + KAC
Sbjct: 103 IFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLA 162
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
R G++V+ + + N V+ +++++ KCG + A FEE
Sbjct: 163 LREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEE--------------- 207
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ D++ + ++ Y+ ++ A FS++++K V W AM
Sbjct: 208 ---------MPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAM--------- 249
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
I GF + + ALE F M +++PN ++ VL+AC+Q+ ++G+ +H Y+ +
Sbjct: 250 ---IDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK 306
Query: 291 HHIQLSTGVGIALI-------SIQGLGT--------GSFVWNSLID-------------- 321
I+L+ VG ALI SI T +N++I
Sbjct: 307 FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIEL 366
Query: 322 ---MYGR---------CGAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
M GR G + + G++ F M ++Y +EP +E Y CMVDLL
Sbjct: 367 FRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLG 426
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---- 408
R G+ ++ + ++ M P + C N ++ E A+ L + SG
Sbjct: 427 RVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVL 486
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H F+ GD H +I EK
Sbjct: 487 LSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEK 546
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
L L ++ GY K HSE+LA+ +GLIST P + +RV+KN
Sbjct: 547 LEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKN 606
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCHS K ++K + R++++ D RFH+F +GACSCGDYW
Sbjct: 607 LRVCYDCHSAIKLIAKITR----RKVVVRDRNRFHYFENGACSCGDYW 650
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 154 EEKDFSNLSLLKHGKEIHPHH--LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+++ S L KH ++ P H L ++ D + L+ +KC + A F
Sbjct: 49 QKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTH 108
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ + A+ I GF G+ A++ +SRM+ + P+ ++ +L A
Sbjct: 109 NPNVYLYTAL------------IDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
C + G+E+H L+ GL + V ++++YG+CG +
Sbjct: 157 CGSQLALREGREVHSRALK----------------LGLSSNRLVRLRIMELYGKCGEL-- 198
Query: 332 NEGWRYFEMMKKE 344
+ R FE M ++
Sbjct: 199 GDARRVFEEMPED 211
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 39/165 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
P+E T+ + C +L LE+G VH+++ +EL F+G
Sbjct: 276 PNEFTIV--CVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 333
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELK 109
+F++M +R+V ++ +M+ ++ G + + LF ++I GV ACS
Sbjct: 334 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 393
Query: 110 DHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
G ++ DY + + E C ++D+ + GR+E A
Sbjct: 394 LVDFGFKIFHSMTRDYGVEPQIEHYGC----MVDLLGRVGRLEEA 434
>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
Length = 734
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 167/665 (25%), Positives = 260/665 (39%), Gaps = 207/665 (31%)
Query: 19 DECTVT------YALIFQRCPKLNNLELGIQVHAHLIVCGV----ELC-AFLGMFEK--- 64
DEC T A + + C L ++E G ++H ++ GV LC A L M+ K
Sbjct: 117 DECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGD 176
Query: 65 ----------MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114
M +++ SW N++ + +G ++L D
Sbjct: 177 HGRARRAFGAMAQKDATSW-------NIV---------IRACLQDGDLVGATQLFDESSL 220
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK-----DFSN--------- 160
+DV + ++ ++ G A G ++ FSN
Sbjct: 221 RDVSSW-------------NTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFAL 267
Query: 161 ---LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC---KFSKIKQKH 214
LS G+++H + LE D V SLMD Y KC ++ A ++S +
Sbjct: 268 AGLLSSRDLGRQLHGR-VVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDR 326
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+W+ M+AGY G EE ALEFF RM++ + L+ V +ACA
Sbjct: 327 QFAWSTMVAGYVQNGREEE------------ALEFFRRMLREGVPAGQFILTSVASACAN 374
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNS 318
+ G+++HG+V + + + A++ + +GS +W +
Sbjct: 375 AGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYS-KSGSLEDACRIFRSAQTKNVALWTT 433
Query: 319 LIDMYGRCGA---------------IQKNE------------------GWRYFEMMKKEY 345
++ Y G I NE G+ YF +M++EY
Sbjct: 434 MLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEY 493
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHA 395
+ P E Y CMVDL RAG D NF+++ + C + + A+ A
Sbjct: 494 GIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLA 553
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
+ L +LE +G VH
Sbjct: 554 SEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHR 613
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH--------------SEKLALA 458
F+A DTSH +I L +L +K++GY R H SEKLA+A
Sbjct: 614 FVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIA 673
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
FG+IST G+ LR+ KNLR+C DCH K++++A +REI++ D YRFHHF DG CS
Sbjct: 674 FGIISTPVGTALRIFKNLRVCEDCHEAIKFITRAT----DREIVVRDLYRFHHFKDGQCS 729
Query: 519 CGDYW 523
C D+W
Sbjct: 730 CEDFW 734
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/417 (19%), Positives = 161/417 (38%), Gaps = 86/417 (20%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------------GVYKACSEL 108
+F+ P R++ +WTS++ G + + + F ++DE GV + C+ L
Sbjct: 80 VFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGL 139
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC---GRMEMASGEFEEKDFSNLSLLK 165
D G+ ++ +++ + + VLDM+ KC GR A G +KD ++ +++
Sbjct: 140 GDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIV- 198
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
++ + DL+ L D + + + SWN +
Sbjct: 199 ---------IRACLQDGDLVGATQLFD----------------ESSLRDVSSWNTI---- 229
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
++G ++G AL +M++ + + + S V A + LG+++H
Sbjct: 230 --------VSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLH 281
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN----EGWRYFEMM 341
G V+ + L +FV SL+DMY +CG ++ + W F
Sbjct: 282 GRVV----------------VAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDF--- 322
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFE 401
E + MV + G+ ++ L F ++M E P I A
Sbjct: 323 -----TEDRQFAWSTMVAGYVQNGREEEALEFFRRMLRE---GVPAGQFILTSVASACAN 374
Query: 402 LEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLAL 457
+ G+ VH F+ H ++ ++ +YS+ + RI ++ +AL
Sbjct: 375 AGMVEQGRQVHGFVE-KLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVAL 430
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT- 256
R L AH F + L +W ++++G A G ++ DG A F+ M+
Sbjct: 72 RGLHNAHRVFDGTPTRSLPAWTSIISGCAREG---------RHADGMRA---FAEMLDEC 119
Query: 257 -DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
PN L+GVL CA + + G+ IHG++LR G+ +
Sbjct: 120 GATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILR----------------SGVCPDVVL 163
Query: 316 WNSLIDMYGRCG 327
N+++DMY +CG
Sbjct: 164 CNAVLDMYAKCG 175
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 143/512 (27%), Positives = 209/512 (40%), Gaps = 145/512 (28%)
Query: 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHC 205
A G EK + + G+++H + L+ S L VNN+L+ FY K + A
Sbjct: 292 ACGSCNEK----MGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARR 347
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETA 246
F K+ + ++SWNA+L+GY EE I+G Q G GE
Sbjct: 348 VFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEG 407
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR--HHIQLSTGVG-IAL 303
L+ F++M ++P + +G + AC+ + G++IH V+R H LS G I +
Sbjct: 408 LKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITM 467
Query: 304 ISIQGLG------------TGSFVWNSLIDMYGRCG----AIQK---------------- 331
S G+ S WN++I + G AI+
Sbjct: 468 YSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITF 527
Query: 332 -------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
EG YF+ M Y + P + Y ++DLL RAG F + +K MP
Sbjct: 528 LTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMP 587
Query: 379 FEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK------------------- 409
FE + C N ++ AA L EL P G
Sbjct: 588 FEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVAR 647
Query: 410 ------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM-- 443
VH F+ D H V + L +L +E+KK+GY+
Sbjct: 648 VRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPD 707
Query: 444 ------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSK 491
K HSEKLA+ +G++ G+ +RV KNLR+CGDCH+ KY+SK
Sbjct: 708 TKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISK 767
Query: 492 AEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EREI++ D RFHHF +G CSCG+YW
Sbjct: 768 VV----EREIVVRDRKRFHHFKNGECSCGNYW 795
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 163/426 (38%), Gaps = 110/426 (25%)
Query: 44 VHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG- 84
VHAH++ G + F+ +F+K+P+ ++ + T+++ Y+ G
Sbjct: 27 VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86
Query: 85 --YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142
+++ N L I + V Y+ MI+ GN L++F++
Sbjct: 87 VKLAQQLFNATPLTIRDTV---------------SYNAMITAYSHGND--GHAALNLFVQ 129
Query: 143 CGRMEMASGEFE-EKDFSNLSLL----KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
R F S LSL+ +H + +H +K L V N+L+ Y C
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPS-VTNALLSCYVCC 188
Query: 198 ---------RYLKVAHCKFSKIKQKHLV--SWNAMLAGYA----LGGFRE---------- 232
+ + A F + + + SW M+AGY L RE
Sbjct: 189 ASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPID 248
Query: 233 -----EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA----QVKGFKLGKE 283
I+G+ + G E A + F RM +Q + + + +++AC ++ F G++
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ 308
Query: 284 IHGYVLR------HHIQLSTGVGIALIS--------------IQGLGTGSFV-WNSLIDM 322
+HGY+LR HH LS V ALI+ + + WN+++
Sbjct: 309 VHGYILRTVVEPSHHFVLS--VNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSG 366
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
Y I+ E F M E + + M+ LA+ G ++ L +M E
Sbjct: 367 YVNAQRIE--EANSIFSEMP-----ERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSE-- 417
Query: 383 SAEPCN 388
EPC+
Sbjct: 418 GLEPCD 423
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 18/143 (12%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F +MPERNV +WT M+ G+ EE + LF + EG+ ACS L
Sbjct: 379 IFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGS 438
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN--------LS 162
G+ ++ +I + + ++ M+ +CG +E A F + + +
Sbjct: 439 LDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAA 498
Query: 163 LLKHGKEIHPHHLKKDDLESDLL 185
L +HG + L + ++ D+L
Sbjct: 499 LAQHGHGVKAIELFEQMMKEDIL 521
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 158/583 (27%), Positives = 229/583 (39%), Gaps = 159/583 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F PK N + + + V L L FE MPERN SWT+M+ Y G+ E
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKL--FEVMPERNEVSWTAMLVGYIQAGHVE 253
Query: 88 EIVNLFYLLID---------------EGVYKACSELKDHRVGKDVYDYMISIK-FEGNAC 131
+ LF + + G+ A + + +D + IK +E N
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEF 313
Query: 132 VKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
+ + +M + R S + L++L +G+E+H L+ + D+ +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS-FDMDVFAVS 372
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y KC L A F + K +V WN+M ITG+ Q+G GE AL
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM------------ITGYAQHGLGEQALG 420
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M M P+ I+ G L AC+ K
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVK----------------------------- 451
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
EG F M ++ P E Y CMVDLL R+G +
Sbjct: 452 ------------------------EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
+ + +K MP EP + C N +IAE AA+ L ELEP ++G
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYT 547
Query: 409 ---------------------------------KVHSFIAGDT----SHSLVHKISEKLM 431
+VH F +GD H+ + +I EKL
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLD 607
Query: 432 RLYSE----------IKKIGYMKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
L E + I ++ + HSE+ A+A+GL+ G P+RV+KNLR+CG
Sbjct: 608 GLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K ++K REII+ D RFHHF DG CSC DYW
Sbjct: 668 DCHSAIKLIAKITS----REIILRDANRFHHFKDGFCSCRDYW 706
>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 152/580 (26%), Positives = 238/580 (41%), Gaps = 155/580 (26%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+ +VF ++M+GMY G E V LF ++D V V++ MI+
Sbjct: 249 DSDVFLASAMVGMYAKKGALSEAVALFKSVLDPNVV--------------VFNAMIAGLC 294
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKK 177
A V VL + E+ S E +F+ S+++ GK+IH LK
Sbjct: 295 RDEAAVGTDVLREALSL-YSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKH 353
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ D + ++L+D Y ++ F+ + ++ +V+W AM I+G
Sbjct: 354 C-FQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAM------------ISGC 400
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR------- 290
Q E AL F ++ ++P+ ++S V+ ACA + + G++I + +
Sbjct: 401 VQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATKSGFGRFT 460
Query: 291 -------HHIQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK----------- 331
H S V A+ Q + + V W+++I + + G +
Sbjct: 461 AMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFNEMVDA 520
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+EG +Y+E MK+EY + P ++ C+VDLL RAG+ D
Sbjct: 521 KVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRAGRLAD 580
Query: 370 TLNFMKKMPF--EP----SSAEPC----NPDIAEHAARHLFELEPLSSGK---------- 409
F++ F EP S C + + + A + EL+P SS
Sbjct: 581 AEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLYNIYLD 640
Query: 410 ---------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSE 436
VHSF+AGD SH + I KL + S+
Sbjct: 641 AGELSLASKIRDVMKERGVKKEPGLSWIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSK 700
Query: 437 IKKIGYMKRIPACG-------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
I K+ HSEKLA+A GLI +P+RV+KNLR+C DCH
Sbjct: 701 IDKLTATDASSTKSDDTIRNEQSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCH 760
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK+EK REI++ D RFHHF DG+CSC DYW
Sbjct: 761 LTMKLISKSEK----REIVLRDAIRFHHFRDGSCSCADYW 796
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 86/381 (22%), Positives = 147/381 (38%), Gaps = 87/381 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TYA C + L G VHA ++ G+ F+ +F+
Sbjct: 116 TYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAA 175
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
ER+ SW +++ Y G ++++ +F ++ R G + + +
Sbjct: 176 DERDDVSWNALVSGYVRAGAQDDMLRVFAMM--------------RRSGIGLNSFALGSV 221
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ A PV+D ++ HG + K +SD+
Sbjct: 222 IKCCAGSDDPVMD----------------------IAAAVHGCVV------KAGFDSDVF 253
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ ++++ YAK L A F + ++V +NAM+AG R+E T
Sbjct: 254 LASAMVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLC----RDEAAVGTDVL--RE 307
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL +S + M+P + S V+ AC + GK+IHG VL+H Q
Sbjct: 308 ALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ----------- 356
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM-KKEYNMEPAMEQYCCMVDLLARA 364
F+ ++LID+Y G ++ +G+R F + K++ AM C +L RA
Sbjct: 357 -----GDDFIGSALIDLYLNSGCME--DGFRCFTSVPKQDVVTWTAMISGCVQNELFERA 409
Query: 365 -GQFDDTLNF-MKKMPFEPSS 383
F + L +K PF SS
Sbjct: 410 LTLFHELLGAGLKPDPFTISS 430
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
S +H +H H ++ S L + N+L+ Y CR A ++ + + VS+N +
Sbjct: 28 SAPRHAAAVHAHIVRAHPSPS-LFLRNTLLAAY--CRLGGHARRLLDEMPRTNAVSFNLL 84
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKL 280
I +++ G E +LE F+R ++ ++ + + + LAAC++ +
Sbjct: 85 ------------IDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLRE 132
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340
GK +H AL ++G+ G FV NSL+ MY RCG + + + F+
Sbjct: 133 GKAVH----------------ALSVLEGIAGGVFVSNSLVSMYARCGDM--GQARQVFDA 174
Query: 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ ++ + +V RAG DD L M
Sbjct: 175 ADERDDV-----SWNALVSGYVRAGAQDDMLRVFAMM 206
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 153/601 (25%), Positives = 251/601 (41%), Gaps = 179/601 (29%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV---CGVELC--AFLGMFEK--MP 66
D PD +A I + C L L LG QVHA ++ C E+ + + M+ K P
Sbjct: 99 DGLQPDH--FVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQP 156
Query: 67 E-----------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVG 114
+ +N SWTSM+ Y G E ++LF ++ + + + G
Sbjct: 157 DEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSG 216
Query: 115 KDVYDYMI--SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
+Y + + ++ EG V VL + +NL+LL+ GK+IH
Sbjct: 217 HGIYSFSLFNEMRREGIDIVDPLVLSSVVG--------------GCANLALLELGKQIHG 262
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ ES L ++N+L+D YAKC + A F ++ +K ++SW +++ G A
Sbjct: 263 LVIALG-FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA------ 315
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q+G E AL + M+ + ++PN ++ G+L AC+ G V R
Sbjct: 316 ------QHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHA----------GLVSR-- 357
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G F M +Y++ P+++
Sbjct: 358 -----------------------------------------GRELFRSMTTDYSINPSLQ 376
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARH------------LF 400
Y C++DLL+R+G D+ N + K+PF+P EP + RH +
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPD--EPTWASLLSACMRHNNLEMGVRIADRVL 434
Query: 401 ELEP----------------------------LSSGKVHS---------------FIAGD 417
+L+P +SS +V F AG+
Sbjct: 435 DLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGE 494
Query: 418 T-SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
+ H + ++I L L +E++K GY+ K HSE+LA+A+GL+
Sbjct: 495 SCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLL 554
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
PG+ +R++KNLR+CGDCH+ K++S K REI++ D R+HHF +G CSC D+
Sbjct: 555 KAVPGTIIRIVKNLRICGDCHNVLKFISDIVK----REIMVRDATRYHHFKEGKCSCNDF 610
Query: 523 W 523
W
Sbjct: 611 W 611
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 63/283 (22%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYN-VLGYYEEIVNLFYLLIDEG----------VYKACSE 107
L +F++MP R+ SW S++ +N L + L + +G + +ACS
Sbjct: 58 LQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSS 117
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
L R+GK V+ + F + VK ++DM+ KCG+ + A F+ F N
Sbjct: 118 LGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKN------- 170
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ S++ YA+ A F + ++L SW A+
Sbjct: 171 ----------------SVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTAL------ 208
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHG 286
I+G Q G G + F+ M + + + + LS V+ CA + +LGK+IHG
Sbjct: 209 ------ISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHG 262
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
V IAL G + F+ N+L+DMY +C I
Sbjct: 263 LV------------IAL----GFESCLFISNALVDMYAKCSDI 289
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 54/245 (22%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H +K +S LL +N+L+D Y KC + A F ++ + VSW ++L
Sbjct: 24 ELHSQIIKAGFDKSSLL-SNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASIL------ 76
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
T + L + M D +QP+ + ++ AC+ + +LGK++H
Sbjct: 77 ------TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHAR 130
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+ + V +SLIDMY +CG Q +E F+ + + ++
Sbjct: 131 FM----------------LSXFCDDEVVKSSLIDMYTKCG--QPDEARAVFDSILFKNSV 172
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSS 407
+ M+ AR+G+ + ++ + P R+LF L S
Sbjct: 173 -----SWTSMISGYARSGRKCEAMDLFLQAP-----------------VRNLFSWTALIS 210
Query: 408 GKVHS 412
G + S
Sbjct: 211 GLIQS 215
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 41/181 (22%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------- 60
+ +D+ +P + + + C L LELG Q+H +I G E C F+
Sbjct: 231 EGIDIVDP----LVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKC 286
Query: 61 --------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVY 102
+F +MP ++V SWTS++ G EE + L+ ++ G+
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346
Query: 103 KACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
ACS G++++ DY I+ + C +LD+ + G ++ A ++
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTC----LLDLLSRSGHLDEAENLLDKIP 402
Query: 158 F 158
F
Sbjct: 403 F 403
>gi|297736355|emb|CBI25078.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 151/561 (26%), Positives = 243/561 (43%), Gaps = 152/561 (27%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAF 58
S L N +E + + +F C K L ++HA L+V G V L A
Sbjct: 39 FSSYGLENQNE-EIDFNSLFDSCTKT---LLAKRLHALLVVSGKIQSNFISIRLVNLYAS 94
Query: 59 LG-------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
LG F+++ ++V++W SM+ Y G++ E ++ FY L
Sbjct: 95 LGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQL--------------- 139
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
++ KF+ + PVL C + G+ +L ++KHG
Sbjct: 140 ---------LLVTKFQADFYTFPPVLK---AC---QTLLGDISTATLIHLYVIKHG---- 180
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
LE +L V+N+L++ YAK L A F ++ + +VSWN+++A Y
Sbjct: 181 --------LEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYE----- 227
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR- 290
Q D TA FF +M ++P+ ++L + + AQ + +K + +HG+++R
Sbjct: 228 -------QNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRR 280
Query: 291 ---HHI--------QLSTGVGIALISIQGLGTGSF-----------------VWNSLIDM 322
H + +S I+ + GL + + W S++
Sbjct: 281 DSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAA 340
Query: 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
Y GA+Q +G R + K N+ + C++DL + G+ D + ++P E
Sbjct: 341 YAHVGALQ--QGMRIHGHLIKT-NLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE-- 395
Query: 383 SAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
S+ P N I+ +SF+ D EK L S
Sbjct: 396 SSVPWNAIIS-----------------YYSFVLQDVEED------EKEHILTS------- 425
Query: 443 MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
HSE+LA+AFG+IST P S +R+ KNLR+CGDCH+ TK++S R EREI+
Sbjct: 426 --------HSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFIS----RITEREIV 473
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D+ RFHHF +G CSCGDYW
Sbjct: 474 VRDSKRFHHFKNGICSCGDYW 494
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 138/529 (26%), Positives = 213/529 (40%), Gaps = 179/529 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F +M E+ V +W +M+ Y + Y+E + LF L+++ +Y DY
Sbjct: 69 IFGQMTEKTVVTWNNMIAAYIYMEMYQEAIALFLELLNQPLYP---------------DY 113
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
V+ F+ G L+ +++H + +K
Sbjct: 114 F----------TMTTVVPAFVLLGS------------------LRQCRQMHSYIIKLGYG 145
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+S L++N ++M YA+C + + F K+ K ++SWN ++ GYA+ +
Sbjct: 146 DSTLIMN-AVMHMYARCGDIVASREIFDKMPGKDVISWNTIIIGYAI------------H 192
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+TALE F M ++PN + VL AC
Sbjct: 193 GQGKTALEMFDEMKCNGIEPNESTFVSVLTAC---------------------------- 224
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
S+ GL T EGW+ F M+ EY M P +E Y CM DL
Sbjct: 225 ----SVSGLET---------------------EGWKEFNSMQHEYGMVPQIEHYGCMTDL 259
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG-- 408
L RAG + L F++ MP P+S + DIAE+AA +F+LE ++G
Sbjct: 260 LGRAGDLREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCY 319
Query: 409 -----------------------------------------KVHSFIAGDTSHSL---VH 424
+ SF+ GD SH +H
Sbjct: 320 VVLSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELNAEECSFVNGDMSHPQSEKIH 379
Query: 425 KISEKLMRLYSE----------IKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
++S+ L R E K + HS +LA+AFGLIS+ PG+P+ V K
Sbjct: 380 ELSDILSRNIGEDLDSPTNLRDSDPFASGKTVLPNKHSVRLAVAFGLISSEPGTPILVKK 439
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
N+R+C CH K +SK + R+I++ D +H F DG+C CGDYW
Sbjct: 440 NVRVCNHCHRALKLISKYSR----RKIVVGDTKIYHIFSDGSCCCGDYW 484
>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Glycine max]
Length = 674
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 158/638 (24%), Positives = 262/638 (41%), Gaps = 174/638 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKMP 66
++ + Q C L ++ LG Q+H+ + G EL A + +F++MP
Sbjct: 72 FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS--I 124
RN+ S M+ Y +G E NLF E+ D V ++ M++
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLF------------DEMPDRNVA--TWNAMVTGLT 177
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHHLKKDDL 180
KFE N L +F + + E+ + ++L L G+++H + + K
Sbjct: 178 KFEMN----EEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAY-VMKCGF 232
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E +L+V SL Y K + + + LV+WN +++G A G+ E +
Sbjct: 233 ECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGV------ 286
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR---------- 290
L+ + M +P+ I+ V+++C+++ GK+IH ++
Sbjct: 287 ------LDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVV 340
Query: 291 -HHIQLSTGVGIALISIQGL----GTGSFVWNSLIDMYGRCG----AIQ----------- 330
+ + + G SI+ +W+S+I YG G AI+
Sbjct: 341 SSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLP 400
Query: 331 ------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
K++G F+MM K+Y ++ ++ Y C+VDLL R+G ++
Sbjct: 401 GNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEA 460
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG-------------- 408
++ MP + + C N +IA A + ++P S
Sbjct: 461 MIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANR 520
Query: 409 -----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
+VH F GD H +I++ L L SEIK+
Sbjct: 521 WQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKR 580
Query: 440 IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY+ + HSEKLA+AF L++T G P+RV+KNLR+C DCH
Sbjct: 581 QGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVA 640
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KY+S+ +K EII+ D+ RFHHF +G CSCGDYW
Sbjct: 641 IKYISEIKK----LEIIVRDSSRFHHFKNGTCSCGDYW 674
>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
Length = 1108
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 164/698 (23%), Positives = 260/698 (37%), Gaps = 204/698 (29%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV---------CGVELCAFLG--- 60
M L D V++ I C L+ G ++H+ ++ L + G
Sbjct: 428 MLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCG 487
Query: 61 -------MFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC----SE 107
+F++MP R++ +W M+G Y +E ++ GV S
Sbjct: 488 SISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSV 547
Query: 108 LKDHRVGKDVYDYMISIKFEG--NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL---- 161
L ++ + I G +AC++ ++ M +C +E A F E D ++
Sbjct: 548 LSSCYCSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWT 607
Query: 162 --------------------------------------------SLLKHGKEIHPHHLKK 177
+ L GK IH + +
Sbjct: 608 AMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHAC-VTE 666
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
LE+D+ V N+L++ Y+ C + A F +K + LVSWN M A YA G +E
Sbjct: 667 IGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE---- 722
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
A+ F +M ++P+ ++ S L GK H +
Sbjct: 723 --------AVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDV 774
Query: 298 GVGIALISI----------QGLGTGSFVWN------------------------------ 317
V L+ + L G+ W
Sbjct: 775 SVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQE 834
Query: 318 -------SLIDMYGRCG-AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+L+ + CG A EG F MK+ + + P +E Y C VDLL RAGQ +
Sbjct: 835 GVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEH 894
Query: 370 TLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG----------- 408
++KMPFE ++ C + ++ E A+ + EL+P +S
Sbjct: 895 AEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCA 954
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+VH F+AGD SH +I L +L
Sbjct: 955 TGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELL 1014
Query: 437 IKKIGY-----------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
+++ GY +K HSE++A+AFGLI+T P + L+++KNLR+CGDCH+
Sbjct: 1015 MRRAGYEADKGLDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTA 1074
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TKY+S REII+ D+ RFHHF +G CSC D W
Sbjct: 1075 TKYISMVMG----REIIVRDSLRFHHFSNGTCSCKDCW 1108
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 85/385 (22%), Positives = 139/385 (36%), Gaps = 113/385 (29%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
Y + Q C N+L G H + G+E FLG +F KM
Sbjct: 28 YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKDHRVGK 115
ERNV SWT+++ G + LF ++ E + AC+ +D +G+
Sbjct: 88 ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
++ + + +E AS
Sbjct: 148 SIHAMIWELG--------------------LERAS------------------------- 162
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
+ LV N++++ YAKC L+ A F I +K +VSW AM YA +E
Sbjct: 163 -----TTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYA----QER-- 211
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
Y D AL F M+ + PN I+ L AC ++ G +H
Sbjct: 212 --RFYPD---ALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLH---------- 253
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355
+L+ LG N+LI+MYG+CG + + F+ M ++ + +
Sbjct: 254 ------SLLHEASLGFDPLASNALINMYGKCGDWEG--AYSVFKAMASRQELD--LVSWN 303
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFE 380
M+ AG+ D + +++ E
Sbjct: 304 AMISASVEAGRHGDAMAIFRRLRLE 328
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/413 (20%), Positives = 156/413 (37%), Gaps = 121/413 (29%)
Query: 7 TLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC---------A 57
T+LL+S N + T + C +L +G +HA + G+E A
Sbjct: 116 TMLLESSAAPN----SYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNA 171
Query: 58 FLGMFEK-------------MPERNVFSWTSMMGMY-NVLGYYEEIVNLFYLLIDE---- 99
+ M+ K +PE++V SWT+M G Y +Y + + +F ++ +
Sbjct: 172 MINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAP 231
Query: 100 ------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
AC+ L+D G ++ + + +++M+ KCG E A F
Sbjct: 232 NVITFITALGACTSLRD---GTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVF 288
Query: 154 ------EEKDFSNLSLL--------KHG------KEIHPHHLKKDDLE------------ 181
+E D + + + +HG + + ++ + +
Sbjct: 289 KAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG 348
Query: 182 -------------------SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAM 221
D+++ N+++ YAKC + A F +I+ K ++SWN M
Sbjct: 349 VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTM 408
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
L G E+ F + + F M+ + PN +S +L AC+ + G
Sbjct: 409 L------GASEDRKSFGK------VVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG 456
Query: 282 KEIHGYVL-RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
++IH +L R + + V L+S MYG+CG+I + E
Sbjct: 457 RKIHSLILTRRRDYVESSVATMLVS----------------MYGKCGSISEAE 493
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 162/618 (26%), Positives = 242/618 (39%), Gaps = 191/618 (30%)
Query: 5 NVTLLLQSMDLTN---PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-----VELC 56
N LLL S L N P+ T LI C K+ + G+Q+HAHL G V L
Sbjct: 107 NSILLLYSHMLQNSVLPNNFTFPSLLI--ACRKIQH---GMQIHAHLFKFGFGAHSVCLN 161
Query: 57 AFLGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---- 99
+ + M F +P + SWTS++ Y+ G +E +F L+ +
Sbjct: 162 SLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSAS 221
Query: 100 --GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
+ A + ++D M K E N VLD F+ + +G
Sbjct: 222 WNAMMAAYVQTNRFHEAFALFDRM---KAENNN-----VLDKFVATTMLSACTG------ 267
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215
L L GK IH ++K++ +E D + +++D Y KC L+ A F + + +
Sbjct: 268 ---LGALDQGKWIH-EYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWI 323
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
SWN M+ G A+ +G+GE A++ F M + + P+ I+ +L ACA
Sbjct: 324 SSWNCMIGGLAM------------HGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHS 371
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
+ G+ Y++R +YG
Sbjct: 372 GLVEEGRNYFSYMIR-------------------------------VYG----------- 389
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAE 385
+EP ME + CMVDLL RAG + + +MP P + +
Sbjct: 390 -----------IEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKK 438
Query: 386 PCNPDIAEHAARHLFELEPLSSGK------------------------------------ 409
N ++ E R + ELEP +SG+
Sbjct: 439 HRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFS 498
Query: 410 -------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI---------------- 446
VH FIAG+ +H ++ K+ + +K +GY+
Sbjct: 499 MIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGE 558
Query: 447 -PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMID 505
P HSEKLA+AFGL T PG LR++KNLR+C DCH K +S +REII+ D
Sbjct: 559 NPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTV----FDREIIVRD 614
Query: 506 NYRFHHFVDGACSCGDYW 523
RFH F G CSC DYW
Sbjct: 615 RTRFHRFKMGQCSCQDYW 632
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/380 (20%), Positives = 144/380 (37%), Gaps = 90/380 (23%)
Query: 29 FQRCPKLNNLE--------LGIQVHAHLIVCGVELCA----------FLGMFEKMPERNV 70
F++C ++ L LG+ H HLI + CA L +F+ +P+ +
Sbjct: 29 FEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDA 88
Query: 71 FSWTSMMG--MYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKDHRVGKDVY 118
F + +++ +++ L I+ L+ ++ V AC +++ G ++
Sbjct: 89 FLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKIQH---GMQIH 145
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
++ F ++ ++ M++ +E A F PH
Sbjct: 146 AHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTI---------------PH----- 185
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
D + SL+ Y+K + A F + QK+ SWNAM+A Y
Sbjct: 186 ---PDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAY------------V 230
Query: 239 QYGDGETALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
Q A F RM + + + + +L+AC + GK IH Y+ R+ I+L +
Sbjct: 231 QTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDS 290
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357
+ A ++DMY +CG ++K + F + + + CM
Sbjct: 291 KLTTA----------------IVDMYCKCGCLEK--ALQVFHSLPLPCRW---ISSWNCM 329
Query: 358 VDLLARAGQFDDTLNFMKKM 377
+ LA G + + K+M
Sbjct: 330 IGGLAMHGNGEAAIQLFKEM 349
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 165/681 (24%), Positives = 266/681 (39%), Gaps = 207/681 (30%)
Query: 34 KLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNVFSWTS 75
KL +L+ Q+HA +I G+ FL +F P +NV SWT
Sbjct: 33 KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTI 92
Query: 76 MMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
++ + E +++F + V A + L R+ K V+ + +
Sbjct: 93 LISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKHGKEIHPHHLKKDDL-- 180
FEGN V+ ++DM+ K G M +A FE E++ + + + G H + DL
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFN 212
Query: 181 ------------------------------------------ESDLLVNNSLMDFYAKCR 198
E+D + +LMD Y
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHN 272
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-D 257
+ AH FS++ K + +W ML TGF+ + A++ F++M+ +
Sbjct: 273 CVDDAHRVFSEMFVKDVAAWTLML------------TGFSSGRHWDRAIKHFNKMLGIQN 320
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---------- 307
++ ++I L G+L++C+ + G+ +H ++ + VG A+I +
Sbjct: 321 LKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAK 380
Query: 308 ----GLGTGSFV-WNSLIDMYGRCG---------------------------------AI 329
G+G V WN++I G G A
Sbjct: 381 RFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAG 440
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SS 383
EG + F M K + P ++ Y C++D+L RAGQ D +F+ MPF+P +
Sbjct: 441 MVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTL 500
Query: 384 AEPC----NPDIAEHAARHLFELEPLSSG------------------------------- 408
C N + ++ +FE+EP +G
Sbjct: 501 LGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLK 560
Query: 409 ------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-------------- 442
++++F+AG+ H KI L L +IKK GY
Sbjct: 561 KDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDD 620
Query: 443 MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
MK+ HSEK+A+AFGL+ T PG+ +R+ KNLR C DCHS +K+VSK R ++
Sbjct: 621 MKKDILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFG----RVLV 676
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFH F DG CSC DYW
Sbjct: 677 IKDANRFHVFQDGVCSCRDYW 697
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/601 (25%), Positives = 251/601 (41%), Gaps = 179/601 (29%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV---CGVELC--AFLGMFEK--MP 66
D PD +A I + C L L LG QVHA ++ C E+ + + M+ K P
Sbjct: 99 DGLQPDH--FVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQP 156
Query: 67 E-----------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH-RVG 114
+ +N SWTSM+ Y G E ++LF ++ + + + G
Sbjct: 157 DDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSG 216
Query: 115 KDVYDYMI--SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
+Y + + ++ EG V VL + +NL+LL+ GK+IH
Sbjct: 217 HGIYSFSLFNEMRREGIDIVDPLVLSSVVG--------------GCANLALLELGKQIHG 262
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
+ ES L ++N+L+D YAKC + A F ++ +K ++SW +++ G A
Sbjct: 263 LVIALG-FESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTA------ 315
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
Q+G E AL + M+ + ++PN ++ G+L AC+ G V R
Sbjct: 316 ------QHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHA----------GLVSR-- 357
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
G F M +Y++ P+++
Sbjct: 358 -----------------------------------------GRELFRSMTTDYSINPSLQ 376
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARH------------LF 400
Y C++DLL+R+G D+ N + K+PF+P EP + RH +
Sbjct: 377 HYTCLLDLLSRSGHLDEAENLLDKIPFKPD--EPTWASLLSACMRHNNLEMGVRIADRVL 434
Query: 401 ELEP----------------------------LSSGKVHS---------------FIAGD 417
+L+P +SS +V F AG+
Sbjct: 435 DLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGE 494
Query: 418 T-SHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
+ H + ++I L L +E++K GY+ K HSE+LA+A+GL+
Sbjct: 495 SCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLL 554
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
PG+ +R++KNLR+CGDCH+ K++S K REI++ D R+HHF +G CSC D+
Sbjct: 555 KAVPGTIIRIVKNLRICGDCHNVLKFISDIVK----REIMVRDATRYHHFKEGKCSCNDF 610
Query: 523 W 523
W
Sbjct: 611 W 611
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 118/283 (41%), Gaps = 63/283 (22%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYN-VLGYYEEIVNLFYLLIDEG----------VYKACSE 107
L +F++MP R+ SW S++ +N L + L + +G + +ACS
Sbjct: 58 LQLFDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSS 117
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167
L R+GK V+ + F + VK ++DM+ KCG+ + A F+ F N
Sbjct: 118 LGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKN------- 170
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ S++ YA+ A F + ++L SW A+
Sbjct: 171 ----------------SVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTAL------ 208
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHG 286
I+G Q G G + F+ M + + + + LS V+ CA + +LGK+IHG
Sbjct: 209 ------ISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHG 262
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
V IAL G + F+ N+L+DMY +C I
Sbjct: 263 LV------------IAL----GFESCLFISNALVDMYAKCSDI 289
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 54/245 (22%)
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E+H +K +S LL +N+L+D Y KC + A F ++ + VSW ++L
Sbjct: 24 ELHSQIIKAGFDKSSLL-SNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASIL------ 76
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
T + L + M D +QP+ + ++ AC+ + +LGK++H
Sbjct: 77 ------TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHAR 130
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+ + V +SLIDMY +CG Q ++ F+ + + ++
Sbjct: 131 FM----------------LSFFCDDEVVKSSLIDMYTKCG--QPDDARAVFDSILFKNSV 172
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSS 407
+ M+ AR+G+ + ++ + P R+LF L S
Sbjct: 173 -----SWTSMISGYARSGRKCEAMDLFLQAP-----------------VRNLFSWTALIS 210
Query: 408 GKVHS 412
G + S
Sbjct: 211 GLIQS 215
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 41/181 (22%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------- 60
+ +D+ +P + + + C L LELG Q+H +I G E C F+
Sbjct: 231 EGIDIVDP----LVLSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKC 286
Query: 61 --------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVY 102
+F +MP ++V SWTS++ G EE + L+ ++ G+
Sbjct: 287 SDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLL 346
Query: 103 KACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157
ACS G++++ DY I+ + C +LD+ + G ++ A ++
Sbjct: 347 YACSHAGLVSRGRELFRSMTTDYSINPSLQHYTC----LLDLLSRSGHLDEAENLLDKIP 402
Query: 158 F 158
F
Sbjct: 403 F 403
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/561 (25%), Positives = 224/561 (39%), Gaps = 176/561 (31%)
Query: 48 LIVCGVELCAFLG---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
+ +C V L A++ +F+ MP R++ SW +M+ Y + G +
Sbjct: 23 VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRG-------------E 69
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
G+ + E+ D +D + + I + + L+++ EM +
Sbjct: 70 VGLAR---EIFDGTEDRDAFSWSSMISAYAKSRRSKEALELW-----REMHAASIIPDCI 121
Query: 159 ---------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209
S+L L G E+H ++ + +E DL + +L+D YAKC ++ A F +
Sbjct: 122 TLVSVVSACSDLGALAVGAEVH-RFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDR 180
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ +K + +W++M I G +G G +L FS+MI M+PN ++ GVL
Sbjct: 181 MPEKDVQTWSSM------------IIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVL 228
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
AC T VG+
Sbjct: 229 IAC------------------------THVGLV--------------------------- 237
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----- 384
+EG +YF M + + +EP +E Y CMVDLL R+G ++ ++ M FEP +
Sbjct: 238 --SEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRAL 295
Query: 385 -EPC----NPDIAEHAARHLFELEPLSSG------------------------------- 408
C N +IAE A L L+PL G
Sbjct: 296 LGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQ 355
Query: 409 ------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------------- 443
K+H F++GD H +I L + +K+ GY
Sbjct: 356 RIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQ 415
Query: 444 -KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREII 502
K HSEKLA+AF L++T S +R+ KNLR C DCHS K +S +R++I
Sbjct: 416 SKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLV----YDRKLI 471
Query: 503 MIDNYRFHHFVDGACSCGDYW 523
+ D RFHHF +G CSC DYW
Sbjct: 472 VRDRNRFHHFSEGQCSCKDYW 492
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 105/261 (40%), Gaps = 65/261 (24%)
Query: 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
M+ K GR+++A F+E D+ + N ++ Y
Sbjct: 1 MYAKAGRVDLARDAFDEAPLR-----------------------DVFLCNVMLAAYVSRS 37
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-------------------FREEITGFTQ 239
+ A F + + LVSWN M+ GYA+ G + I+ + +
Sbjct: 38 EVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAK 97
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+ ALE + M + P+ I+L V++AC+ + +G E+H +V + I+L +
Sbjct: 98 SRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKL 157
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
G A LIDMY +CG I+ + R F+ M E ++ + M+
Sbjct: 158 GTA----------------LIDMYAKCGDIESAQ--RVFDRMP-----EKDVQTWSSMII 194
Query: 360 LLARAGQFDDTLNFMKKMPFE 380
LA G ++L+ KM E
Sbjct: 195 GLANHGLGHESLSLFSKMISE 215
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P + + +H + + V L +F+ +R+ FSW+SM+ Y +
Sbjct: 45 VFDGMPMRDLVSWNTMIHGYAMRGEVGLAR--EIFDGTEDRDAFSWSSMISAYAKSRRSK 102
Query: 88 EIVNLFY------LLID----EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137
E + L+ ++ D V ACS+L VG +V+ ++ S + E + + ++
Sbjct: 103 EALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALI 162
Query: 138 DMFIKCGRMEMASGEFE---EKDFSNLS-----LLKHG 167
DM+ KCG +E A F+ EKD S L HG
Sbjct: 163 DMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 200
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 151/580 (26%), Positives = 244/580 (42%), Gaps = 155/580 (26%)
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+ ++F ++M+ MY G E V LF ++D V V++ MI+
Sbjct: 249 DTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVV--------------VFNAMIAGLC 294
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH---------GKEIHPHHLKK 177
A V + V+ + E+ S E +F+ S+++ GK+IH LK
Sbjct: 295 RDEAAVHKEVVREALSL-YSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKH 353
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
+ D + ++L+D Y ++ F + ++ +V+W AM I+G
Sbjct: 354 C-FQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAM------------ISGC 400
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR------- 290
Q E AL F ++ ++P+ ++S V+ ACA + + G+++ + +
Sbjct: 401 VQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQMQCFATKSGFDRFT 460
Query: 291 -------HHIQLSTGVGIALISIQGLGTGSFV-WNSLIDMYGRCGAIQK----------- 331
H S V A+ Q + + V W+++I + + G ++
Sbjct: 461 AMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFFNEMVGA 520
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
+EG RY+E+MK EY + P ++ C+VDLL RAG+ D
Sbjct: 521 KVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLAD 580
Query: 370 TLNFMKKMPF--EP----SSAEPC----NPDIAEHAARHLFELEPLSSG----------- 408
F++ F EP S C + + + A + EL+P SSG
Sbjct: 581 AEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNLYNMYLD 640
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
+HSF+AGD SH + I KL + S+
Sbjct: 641 AGELSLGSKIRDLMKERGVKKEPGLSWIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSK 700
Query: 437 IKKIGY-----MKRIPACG--------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
I K+ ++ + G HSEKLA+A G+I +P+RV+KNLR+C DCH
Sbjct: 701 IDKLTTTDTSCIEWVETTGREQNWMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCH 760
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
S K +SK+E REII+ D RFHHF DG+CSCGDYW
Sbjct: 761 STMKLISKSEC----REIILRDVIRFHHFRDGSCSCGDYW 796
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 154/381 (40%), Gaps = 87/381 (22%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TYA C + L+ G VHA ++ G+ F+ +F+
Sbjct: 116 TYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVT 175
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
ER+ SW S++ Y +G +EE++ +F L+ + C+ +G + +
Sbjct: 176 EERDDVSWNSLVSGYLRVGAHEEMLRVFALM------RRCA------MGLNSF------- 216
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
L IKC SG + ++ HG + K L++DL
Sbjct: 217 ----------ALGSVIKC-----CSGG--DGSVRGIAEAVHGCVV------KAGLDTDLF 253
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ ++++D YAK L A F + ++V +NAM+AG R+E +
Sbjct: 254 LASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLC----RDEAAVHKEVV--RE 307
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
AL +S + M+P + S V+ AC + GK+IHG VL+H Q
Sbjct: 308 ALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQ----------- 356
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM-KKEYNMEPAMEQYCCMVDLLARA 364
F+ ++LID+Y ++ +G+R F + K++ AM C +L RA
Sbjct: 357 -----GDDFIGSALIDLYFNSACME--DGFRCFRSVPKQDVVTWTAMISGCVQNELFERA 409
Query: 365 -GQFDDTLNF-MKKMPFEPSS 383
F + L +K PF SS
Sbjct: 410 LALFHELLGVGLKPDPFTISS 430
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 33/173 (19%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAMLAGYALGGFR 231
H+ + L + N+L+ Y + + ++ +++ VS+N ++ Y+ G
Sbjct: 35 HIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQT 94
Query: 232 EEITGFTQYGDGETALE-FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
EE +LE F +++ + + + LAAC++ K GK +H
Sbjct: 95 EE------------SLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVH----- 137
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
AL ++GL G FV NSL+ MY RCG + E R F++ ++
Sbjct: 138 -----------ALAVLEGLAEGVFVSNSLVSMYARCGDM--GEARRVFDVTEE 177
>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Glycine max]
Length = 765
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 165/661 (24%), Positives = 244/661 (36%), Gaps = 215/661 (32%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL--------- 55
V L L+ +DL P+ + ++ P + L+LG Q+H+ LI G
Sbjct: 177 VRLFLRMLDLGITPNSSIFSTLIMSFTDPSM--LDLGKQIHSQLIRIGFAANISIETLIS 234
Query: 56 -----CAFLGMFE----KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----- 101
C +L E KM +N + T +M Y + + LF +I EGV
Sbjct: 235 NMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGF 294
Query: 102 -----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE- 155
KAC+ L D GK ++ Y I + E V P++D ++KC R E A FE
Sbjct: 295 VFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESI 354
Query: 156 ---KDFSNLSLLKH--------------------------------------------GK 168
DFS +L+ G
Sbjct: 355 HEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGA 414
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
+IH +KK L + L ++++ Y+KC + AH F I + V+W A++ +A
Sbjct: 415 QIHADAIKK-GLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAY- 472
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+G AL F M + ++PN ++ G+L AC+ K GK+I
Sbjct: 473 -----------HGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKI---- 517
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+S+ D YG +
Sbjct: 518 ---------------------------LDSMSDEYG----------------------VN 528
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARH 398
P ++ Y CM+D+ +RAG + L ++ +PFEP S C N +I AA +
Sbjct: 529 PTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADN 588
Query: 399 LFELEPLSS-------------------------------------------GKVHSFIA 415
+F L+PL S GKVH F+
Sbjct: 589 IFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVV 648
Query: 416 GDTSHSLVHKISEKLMRLYSEIKKIGYM-------------KRIPACGHSEKLALAFGLI 462
GD H +I KL L KK ++ HSE+LA+A+GLI
Sbjct: 649 GDRHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLDHSERLAIAYGLI 708
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
T+ +P+ V KN R C DCH K VS RE+++ D RFHH G CSC DY
Sbjct: 709 CTAADTPIMVFKNTRSCKDCHDFAKRVSIVTG----RELVVRDGNRFHHINSGECSCRDY 764
Query: 523 W 523
W
Sbjct: 765 W 765
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 120 YMISIKFEGNACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
++IS+ +GN + K G + S E+ K L L GK H +
Sbjct: 63 HLISLAKQGNLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA 122
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
+ S+ ++N ++ Y C+ A F KI + L SW+ +++ Y T
Sbjct: 123 N--SNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAY------------T 168
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+ G + A+ F RM+ + PN+ S ++ + LGK+IH ++R
Sbjct: 169 EEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIR-------- 220
Query: 299 VGIAL-ISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+G A ISI+ L + +MY +CG + E
Sbjct: 221 IGFAANISIETL---------ISNMYVKCGWLDGAE 247
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 161/628 (25%), Positives = 246/628 (39%), Gaps = 207/628 (32%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM 77
P E T+ I +L++L G Q+H +IV FLG NVF W ++
Sbjct: 153 PTEYTIVS--ILNASAQLSDLRYGKQIHGSIIVRN-----FLG--------NVFIWNALT 197
Query: 78 GMYNVLGYYEEIVNLFYLLIDEGVYK---ACSELKDHRVGKDVYDYMISIKFEG---NAC 131
MY G E+ LF L + + S + + + ++ G +
Sbjct: 198 DMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQV 257
Query: 132 VKRPVLDMFIKCGRMEMAS---GEFEEKDF------------------------------ 158
++ + +CGR++ A EF+EKD
Sbjct: 258 TMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317
Query: 159 ---------------SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+ L+ L HG+ +H + L ++LLV+++L+D Y+KC ++ A
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAG-LNNNLLVSSALIDMYSKCGFIDDA 376
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F+ + +++VSWNAM+ G A Q G + ALE F M+Q +P+ +
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCA------------QNGHDKDALELFENMLQQKFKPDNV 424
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
+ G+L+AC + G+E ++S+ + +
Sbjct: 425 TFIGILSACLHCNWIEQGQE-------------------------------YFDSITNQH 453
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS- 382
G M P ++ Y CMV+LL R G+ + + +K M +P
Sbjct: 454 G----------------------MTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF 491
Query: 383 -------SAEPCNPDI--AEHAARHLFELEP--------LSS------------------ 407
S DI AE AARHLFEL+P LS+
Sbjct: 492 LIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLM 551
Query: 408 -----------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------- 443
+VH F + D +H I EKL L ++++ G+
Sbjct: 552 KSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVL 611
Query: 444 -------KRIPACGHSEKLALAFGLISTSPG-SPLRVIKNLRMCGDCHSPTKYVSKAEKR 495
K C HSEKLALAFGLI G SP+R+IKN+R+C DCH K+ S R
Sbjct: 612 HDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFAS----R 667
Query: 496 EREREIIMIDNYRFHHFVDGACSCGDYW 523
R+II+ D+ RFHHF G CSC D W
Sbjct: 668 IIGRQIILRDSNRFHHFSTGKCSCNDNW 695
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 156/351 (44%), Gaps = 64/351 (18%)
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
F++MP R+ S+ + + ++ +E + LF + EG + A ++L
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLS 169
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDFSNLSLLKH 166
D R GK ++ +I F GN + + DM+ KCG +E A F+ +K+ + +L+
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMIS 229
Query: 167 G--KEIHP-------HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217
G K P H ++ D + ++++ Y +C + A FS+ K+K +V
Sbjct: 230 GYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC 289
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
W AM+ GYA G REE AL F+ M+ ++P++ +LS V+++CA++
Sbjct: 290 WTAMMVGYAKNG-REE-----------DALLLFNEMLLEHIEPDSYTLSSVVSSCAKLAS 337
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G+ +HG + + GL V ++LIDMY +CG +
Sbjct: 338 LHHGQAVHGKSI----------------LAGLNNNLLVSSALIDMYSKCG---------F 372
Query: 338 FEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTLNFMKKM---PFEPSS 383
+ + +N+ P + M+ A+ G D L + M F+P +
Sbjct: 373 IDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDN 423
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--- 229
HHL + +D ++N L+ YAK L+ A F K+ ++ + SWNA+L+ YA G
Sbjct: 50 HHLFQ---PTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQ 106
Query: 230 ----------FREE------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
FR+ I GF+ + +LE F RM + +P ++ +L A A
Sbjct: 107 NLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASA 166
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
Q+ + GK+IHG ++ ++ F+WN+L DMY +CG I++
Sbjct: 167 QLSDLRYGKQIHGSII----------------VRNFLGNVFIWNALTDMYAKCGEIEQAR 210
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
W + + KK + + M+ A+ GQ + + + +M
Sbjct: 211 -WLFDCLTKKN------LVSWNLMISGYAKNGQPEKCIGLLHQM 247
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 37/179 (20%)
Query: 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------- 54
++ LL M L + + + T + + C KL +L G VH I+ G+
Sbjct: 304 EDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSAL 363
Query: 55 -----LCAFL----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE------ 99
C F+ +F MP RNV SW +M+ G+ ++ + LF ++ +
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDN 423
Query: 100 ----GVYKACSELKDHRVGKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMA 149
G+ AC G++ +D + ++ + AC ++++ + GR+E A
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYAC----MVNLLGRTGRIEQA 478
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/570 (25%), Positives = 231/570 (40%), Gaps = 187/570 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+++ +R+V SW SM+ + G+ + F +++ GV AC+ + +
Sbjct: 215 LFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGN 274
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS-------------------- 150
+G+ ++ Y + F G +LDM+ KCG + A+
Sbjct: 275 LTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAA 334
Query: 151 -----------GEFEEKDFSNL-----------------SLLKHGKEIHPHHLKKDDLES 182
G F+E L + L G+E+H +H+KK+++ S
Sbjct: 335 HVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVH-NHIKKNNMGS 393
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+L V+N+LM+ YAKC ++ A+ FS++ K++VSWN M+ GY+ E
Sbjct: 394 NLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNE--------- 444
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F M Q ++P+ ++++ VL ACA + + G+EIHG++LR V A
Sbjct: 445 ---ALQLFLDM-QKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACA 500
Query: 303 LISIQ---GL------------GTGSFVWNSLIDMYG---------------RCGAIQK- 331
L+ + GL +W +I YG R I+
Sbjct: 501 LVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPE 560
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EGW+ F+ MK E N+EP +E Y CMVDLL R+G F+
Sbjct: 561 ESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFI 620
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSS----------------- 407
+ MP +P +A C + ++AE A H+FELEP ++
Sbjct: 621 ETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWE 680
Query: 408 --------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
GK + F AGDTSH I L +L ++ + G
Sbjct: 681 EVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFFAGDTSHPQAKMIDSLLRKLTMKMNRGG 740
Query: 442 Y--------------MKRIPACGHSEKLAL 457
Y +K + C HSEKLA+
Sbjct: 741 YSNKIKYALINADDRLKEVLLCAHSEKLAM 770
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 129/325 (39%), Gaps = 90/325 (27%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY + Q C +L +LE G +VH+ + G+ + LG +F+ +
Sbjct: 59 TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
+F W +M Y +G Y E V LF ++++ + D Y +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLF------------EKMQELGIRGDSYTF----- 161
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
CV K F+ + ++ K +H + LK + +
Sbjct: 162 ----TCVL----------------------KGFAASAKVRECKRVHGYVLKLGFGSYNAV 195
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
VN SL+ Y KC ++ A F ++ + +VSWN+M++G + GF
Sbjct: 196 VN-SLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGF------------SRN 242
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
LEFF +M+ + ++ +L VL ACA V LG+ +H Y ++
Sbjct: 243 GLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVK--------------- 287
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQ 330
G G N+L+DMY +CG +
Sbjct: 288 -AGFSGGVMFNNTLLDMYSKCGNLN 311
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-----ELCAFLG 60
+ L L PD+ VT A + C L LE G ++H H++ G CA +
Sbjct: 446 LQLFLDMQKQLKPDD--VTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVD 503
Query: 61 M-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK---- 103
M F+ +P++++ WT M+ Y + G+ +E ++ F + G+
Sbjct: 504 MYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESS 563
Query: 104 ------ACSELKDHRVGKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMA 149
AC+ + G ++D M I K E AC ++D+ I+ G + A
Sbjct: 564 FTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYAC----MVDLLIRSGNLSRA 616
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 143/588 (24%), Positives = 233/588 (39%), Gaps = 194/588 (32%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F ++ + F + +M+ Y + E + L+Y +++ GV +KAC+ L+
Sbjct: 41 IFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRS 100
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
G ++ Y+ EG+ V+ +++M+ KCG++E++ FE D +++
Sbjct: 101 IEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAA 160
Query: 171 HPH-----------------------------------HLKKDDL-------------ES 182
H HL DL E
Sbjct: 161 HASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREM 220
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+++V SL+D Y KC ++ F ++ +K+ +S++ M ITG +G
Sbjct: 221 NVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVM------------ITGLAMHGR 268
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G AL+ FS M++ ++P+ + GVL+AC
Sbjct: 269 GMEALQVFSDMLEEGLKPDDVVYLGVLSACNHA--------------------------- 301
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L+D EG + F MK E+ +EP ++ Y C+V L+
Sbjct: 302 ---------------GLVD-----------EGLQCFNRMKLEHGIEPTIQHYGCIVHLMG 335
Query: 363 RAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG + L ++ MP +P+ C N +I E AA+ L EL + G
Sbjct: 336 RAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVV 395
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
K++ F++ D SH + E
Sbjct: 396 LSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEM 455
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
+ ++ ++K GY KR HS+KLA+AF LI TS G+P+R+ +N
Sbjct: 456 IHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARN 515
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LRMC DCH+ TK +S +REI + D RFHHF DG CSC DYW
Sbjct: 516 LRMCNDCHTYTKLISVI----YQREITVRDRNRFHHFKDGTCSCRDYW 559
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 96/225 (42%), Gaps = 45/225 (20%)
Query: 168 KEIHPHHLKKDD--LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K++H LK ++ S+L+ +L D+ + + A F +I Q +N M+ GY
Sbjct: 5 KQVHAQVLKWENSFCASNLVATCALSDWGS----MDYACSIFRQIDQPGTFEFNTMIRGY 60
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ E AL + M++ ++ + + + ACA ++ + G +IH
Sbjct: 61 ------------VNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIH 108
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
GY+ + +GL FV NSLI+MYG+CG I+ + FE M +
Sbjct: 109 GYIFK----------------RGLEGDLFVQNSLINMYGKCGKIELS--CSVFEHMDRR- 149
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
+ + ++ A G + + L+ +M E S C P+
Sbjct: 150 ----DVASWSAIIAAHASLGMWSECLSVFGEMSREGS----CRPE 186
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 159/640 (24%), Positives = 254/640 (39%), Gaps = 204/640 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFL 59
PD +TY + + C + + G+ VH H++ G E L A
Sbjct: 193 PDH--MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAK 250
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F R+V SW +M+ GY + + E+ R+ V+D
Sbjct: 251 QLFNLCSARDVVSWNAMID-----GYVKHV-----------------EMGHARM---VFD 285
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
M+ + +++ + G+++ A F+E
Sbjct: 286 RMVC----RDVISWNTMINGYAIVGKIDEAKRLFDEMP---------------------- 319
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E +L+ NS++ + KC ++ A FS++ + +VSWN+MLA YA Q
Sbjct: 320 -ERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYA------------Q 366
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G AL F +M ++P ++ +L+ACA + G +H Y+ + I++++ V
Sbjct: 367 CGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIV 426
Query: 300 GIALISIQG------LGTGSF---------VWNSLID---MYGRCGAIQK---------- 331
G AL+ + L T F WN++I ++G Q+
Sbjct: 427 GTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGV 486
Query: 332 --------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTL 371
+EG + + M Y +EP +E Y C++DLLARAG ++ +
Sbjct: 487 EPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAM 546
Query: 372 NFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSGK------------ 409
+ MP EP+ + C N ++ E + L L+P SG+
Sbjct: 547 ELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAK 606
Query: 410 -------------------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIK 438
VH F+AGD SH +KI EKL +++ +K
Sbjct: 607 KWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLK 666
Query: 439 K-IGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
IGY K HSEKLA+A+GL+ +R++KNLR+C DCH
Sbjct: 667 SAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCH 726
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K +SK REII+ D RFHHF DG CSC D+W
Sbjct: 727 HVIKLISKVYG----REIIVRDRNRFHHFEDGECSCLDFW 762
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 151/585 (25%), Positives = 231/585 (39%), Gaps = 198/585 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T++ I + C + E G Q+HA + ++ F+G F
Sbjct: 252 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 311
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ +V SWTS++ + G +E + LF+ L+ G + ++ ISI
Sbjct: 312 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSG--------------RKPDEFTISIM 357
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC +NL+ +K G++IH + +K + + +
Sbjct: 358 L--SAC---------------------------ANLAAVKSGEQIHAYAIKTG-IGNFTI 387
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ NS + YAKC + A+ F + K +VSW+ M++ A Q+G +
Sbjct: 388 IQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNA------------QHGCAKE 435
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F M + + PN I+ GVL AC+ HG ++
Sbjct: 436 AVDLFELMKGSGIAPNHITFLGVLVACS-----------HGGLVE--------------- 469
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
EG RYFE+MKK++ + P ++ C+VDLL RAG
Sbjct: 470 ---------------------------EGLRYFEIMKKDHGITPNVKHSACIVDLLGRAG 502
Query: 366 QFDDTLNFMKKMPFEP------SSAEPCN----PDIAEHAARHLFELEPLSSGK------ 409
+ + +F+ FE S C D + A + ELEP ++
Sbjct: 503 RLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYN 562
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
VHSF+AGD SH I +L
Sbjct: 563 IYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEE 622
Query: 433 LYSEIKKIGYM--KRIPACG------------HSEKLALAFGLISTSPGSPLRVIKNLRM 478
+ EIKK+ Y+ K + HSEKLA+ FG+IS +P+RV+KNLR
Sbjct: 623 MLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRS 682
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C CH K S+ E REII+ D RFH F DG+CSCGDYW
Sbjct: 683 CWHCHETMKLFSRLEN----REIILRDPIRFHRFRDGSCSCGDYW 723
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/408 (22%), Positives = 175/408 (42%), Gaps = 91/408 (22%)
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVYK----ACSELKDHRVG 114
MP+RNV SW S++ Y +G+Y E++NLF L +D+ + C D R+G
Sbjct: 1 MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD----------------- 157
+ ++ + G + ++DM+ KCGR++ A FE D
Sbjct: 61 RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120
Query: 158 FSN-------LSLLKHGKEIHPHHLK-------------------------KDDLESDLL 185
SN + +L+HG ++ + L K L+ D++
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L+D YAK L+ A F + ++V +NAM+AG F + T ++ +
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAG-----FLQMETMADEFAN--E 233
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A+ F M M+P+ + S +L AC+ ++ F+ GK+IH + ++++Q
Sbjct: 234 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ----------- 282
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+ F+ N+L+++Y G+I+ +G + F K + + ++ + G
Sbjct: 283 -----SDEFIGNALVELYSLSGSIE--DGLKCFHSTPK-----LDVVSWTSLIVGHVQNG 330
Query: 366 QFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSF 413
QF+ L ++ F + I A +L ++ S ++H++
Sbjct: 331 QFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVK--SGEQIHAY 376
>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g04780-like [Glycine max]
Length = 632
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/469 (27%), Positives = 197/469 (42%), Gaps = 139/469 (29%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K ++S+ V +L+ YAKC +K A F + +K+ V+W++M+AGY GF +E
Sbjct: 179 KAAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDE--- 235
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG---------- 286
AL F + ++S ++ACA + GK++H
Sbjct: 236 ---------ALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSN 286
Query: 287 -YVLRHHIQLSTGVGI---ALISIQG-LGTGSFV-WNSLIDMYGRCGAIQK--------- 331
YV I + G A + +G + S V WN++I + R Q+
Sbjct: 287 IYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQ 346
Query: 332 ------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
EG +YF++M +++N+ P++ Y CM+D+L RAG
Sbjct: 347 QRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLV 406
Query: 368 DDTLNFMKKMPFEPSSA-------------EPC----NPDIAEHAARHLFELEPLSSG-- 408
+ + +M F +S+ C N + AE AA+HLFE+EP ++G
Sbjct: 407 QKAYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAAKHLFEMEPNNAGNH 466
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
K+HSF G+ +H +
Sbjct: 467 ILLANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDNY 526
Query: 428 EKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVI 473
KL L E+KK+ Y K + HSEKLA+ FGL+ P+R+I
Sbjct: 527 AKLDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITFGLVCLPTEIPIRII 586
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
KNLR+CGDCH+ K VSK REII+ D RFHHF DG CSCG++
Sbjct: 587 KNLRICGDCHTFMKLVSKFA----SREIIVRDTNRFHHFKDGLCSCGEF 631
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
LE D+L + L++ Y+KC + K ++ K L+ N I TQ
Sbjct: 81 LEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNT------------RIGALTQ 128
Query: 240 YGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
+ AL+ RM Q ++ P N ++S VL CA ++H + ++
Sbjct: 129 NAEDRKALKLLIRM-QREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIK-------- 179
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+ + FV +L+ +Y +C +I+ + + FE M ++
Sbjct: 180 --------AAIDSNCFVXTALLHVYAKCSSIK--DASQMFESMPEK 215
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 171/701 (24%), Positives = 271/701 (38%), Gaps = 198/701 (28%)
Query: 2 VIKNVTLLLQSMD-LTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI----VCGVELC 56
V NV L ++ + +PD + C + + L + V+ L+ CG L
Sbjct: 6 VKANVITFLNVLNSVVDPD--ALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG-SLT 62
Query: 57 AFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACS 106
+F+ MP R+V +W SM+ Y++ E +F + EG + AC
Sbjct: 63 DARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACV 122
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDFSNLSL 163
++ + GK V + + FE + V ++ M+ +C E A+ G ++K+ S
Sbjct: 123 NPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSA 182
Query: 164 L-----KHG-------------------------------------KEIHPHHL--KKDD 179
+ HG +E+ HL +
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHG 242
Query: 180 LESDLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ ++N+L++ Y +C L VA ++ ++ + +WN ++ GY L G E
Sbjct: 243 LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSRE---- 298
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
ALE + R+ + + ++ VL AC GK IH + +
Sbjct: 299 --------ALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDV 350
Query: 298 GVGIALISI-QGLGT--------------GSFVWNSLIDMYGRCGAIQK----------- 331
V AL ++ G+ + WN ++ Y + G ++
Sbjct: 351 IVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQE 410
Query: 332 ----------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369
EG +YF + + +E E Y C+VDLL RAG+ +
Sbjct: 411 GVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQE 470
Query: 370 TLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG----------- 408
++ KMP EP S C + D + AAR L EL+P +S
Sbjct: 471 AEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSE 530
Query: 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSE 436
KVH F DTSH +I +K+ L
Sbjct: 531 RGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFA 590
Query: 437 IKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDC 482
+++ GY+ K HSEKLA+AFGLIST S L + KNLR+C DC
Sbjct: 591 MREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDC 650
Query: 483 HSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
H+ TK++SK REI++ DN+RFHHF DG+CSC DYW
Sbjct: 651 HTATKFISKITG----REIVVRDNHRFHHFRDGSCSCKDYW 687
>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
Length = 487
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 206/481 (42%), Gaps = 135/481 (28%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
L+ L+ GK IH L+ LES+ +V +L++ Y K L A F +++K LVSW A
Sbjct: 24 LADLRLGKLIHSCVLEAG-LESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTA 82
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM---QPNTISLSGVLAACAQVKG 277
+++ Y+ RE++ AL+ F M + +P+ + +L ACA +
Sbjct: 83 LMSAYS----REDLY--------REALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSA 130
Query: 278 FKLGKEIHGYVLRHHIQLSTGV-GIALISIQG---------------LGTGSFVWNSLID 321
G+ H + S GV G+ +I++ G + W ++I
Sbjct: 131 AAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIIS 190
Query: 322 MYGRCGAIQKN---------------------------------EGWRYFEMMKKEYNME 348
Y G +++ +GW +F + KE+ +E
Sbjct: 191 GYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVE 250
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARH 398
P + Y CM+DLL R+G + +++MPF+ ++ C + + + AA
Sbjct: 251 PGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEK 310
Query: 399 LFELEPLSSG------------------------------------------KVHSFIAG 416
+ ELEP+ + +VH F AG
Sbjct: 311 VLELEPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAG 370
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
D SH +I L L +++ GY+ K C HSEKLA+AFGL+
Sbjct: 371 DKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLL 430
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
ST GS LR+IKNLR+CGDCH+ K+VS+ REI M D+ RFHHF DG CSCGDY
Sbjct: 431 STPAGSSLRIIKNLRVCGDCHTAAKFVSRIAG----REIFMRDSQRFHHFQDGHCSCGDY 486
Query: 523 W 523
W
Sbjct: 487 W 487
>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
Length = 688
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 131/530 (24%), Positives = 217/530 (40%), Gaps = 180/530 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ +P +V +W SM+ Y + G EE + L+ E+ RV D + +
Sbjct: 272 VFDGLPRASVVAWNSMLAAYVLHGRSEEALELY------------QEMCRSRVAMDQFTF 319
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+ FS L LL+H K+ H +++ L
Sbjct: 320 STMLGV-------------------------------FSRLGLLEHAKQAHAGLIQRG-L 347
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D++ N +L+D Y K ++ A F ++ +++L+SWNA++AGY +
Sbjct: 348 PLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGY------------H 395
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ A+E F R+I + PN ++ VL AC
Sbjct: 396 GMGDKAIEMFERLIAEGVVPNHVTFLAVLNACR--------------------------- 428
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
++ L+D +G R F++M + M+P Y C+++L
Sbjct: 429 ---------------FSGLVD-----------KGKRIFQLMTENLRMKPRAMHYACVIEL 462
Query: 361 LARAGQFDDTLNFMKKMPFEPS----------SAEPCNPDIAEHAARHLFELEP------ 404
R G D+ + +++ PF P+ S N +A+ AA L +EP
Sbjct: 463 FGREGLLDEAYSMIRRAPFTPTANMWGALLTASRIHKNMHLAKLAAEQLLAMEPEKINSY 522
Query: 405 -------LSSGKV------------------------------HSFIAGDTSHSLVHKIS 427
+SSG+ H F DT H +I
Sbjct: 523 AVLLNLYVSSGRQDDACKVVETLKRKGLYIHNACTWITVKKTDHKFFFKDTLHPQSAEIY 582
Query: 428 EKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVI 473
+L L ++++ GY+ +++ + HSE+LA+AFGL+ST+P +PLR+
Sbjct: 583 RRLHTLMKDVREAGYVAEENELLPDIYPDEQKVSSAYHSERLAIAFGLMSTAPQTPLRIN 642
Query: 474 KNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++ R+C DCH K+V++ K REI++ D RFHHF G CSCGDYW
Sbjct: 643 QSHRLCRDCHKVIKFVAEVTK----REIVVRDGSRFHHFKLGICSCGDYW 688
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 37/178 (20%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY-------- 225
H++ + DL +N ++ Y +C L A F + ++ V+W M+ G
Sbjct: 130 HVESSGFDLDLYTHNHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRA 189
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
AL FRE + GDG+ P SL L A + G+++H
Sbjct: 190 ALALFREMLLAEEAGGDGDA--------------PPPRSLVVALRAATASGSARAGQQLH 235
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
V++ G ++ +L+DMY +CG I +E R F+ + +
Sbjct: 236 CCVVK-------------AGACGDVADRYLACALLDMYSKCGLI--DEARRVFDGLPR 278
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 86/208 (41%), Gaps = 38/208 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------CAFLGM------FEKM 65
T++ + +L LE Q HA LI G+ L C + M FE+M
Sbjct: 318 TFSTMLGVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERM 377
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KAC--SELKDHRV 113
P RN+ SW +++ Y G ++ + +F LI EGV AC S L D
Sbjct: 378 PRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRFSGLVDK-- 435
Query: 114 GKDVYDYMI-SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS----LLKHGK 168
GK ++ M +++ + A V+++F + G ++ A F+ + L
Sbjct: 436 GKRIFQLMTENLRMKPRAMHYACVIELFGREGLLDEAYSMIRRAPFTPTANMWGALLTAS 495
Query: 169 EIHPH-HLKKDDLESDLLVNNSLMDFYA 195
IH + HL K E L + ++ YA
Sbjct: 496 RIHKNMHLAKLAAEQLLAMEPEKINSYA 523
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 152/588 (25%), Positives = 232/588 (39%), Gaps = 195/588 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK----------ACSELKD 110
+F+++ N+ SW SM+G+Y +++ + LF + +G+ AC+
Sbjct: 419 VFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSH 478
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD------------- 157
R K V+ + G+ V+ +++M+ K G +++A +E D
Sbjct: 479 GRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLING 538
Query: 158 -------------FSNLSL----------------------LKHGKEIHPHHLKKDDLES 182
+ L L L GK IH + ++ L+S
Sbjct: 539 YALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG-LDS 597
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D++V N+L + Y+KC ++ A F + + VSWN ML YA Q+G+
Sbjct: 598 DVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYA------------QHGE 645
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E L+ +M Q ++ N I+ V LS+
Sbjct: 646 SEEVLKLIRKMEQEGVKLNGITFVSV--------------------------LSSCSHAG 679
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
LI+ EG +YF + + +E E Y C+VDLL
Sbjct: 680 LIA---------------------------EGCQYFHSLGHDRGIEVKTEHYGCLVDLLG 712
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---- 408
RAG+ + ++ KMP EP S C + D + AA L EL+P +S
Sbjct: 713 RAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVV 772
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
KVH F DTSH +I +K
Sbjct: 773 LSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDK 832
Query: 430 LMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKN 475
+ L +++ GY+ K HSEKLA+AFGLIST S L + KN
Sbjct: 833 VEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKN 892
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ TK++SK REI++ DN+RFHHF DG+CSC DYW
Sbjct: 893 LRVCEDCHTATKFISKITG----REIVVRDNHRFHHFRDGSCSCKDYW 936
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 97/447 (21%), Positives = 170/447 (38%), Gaps = 115/447 (25%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA---------HLIV--------- 50
L +M L +T + C L GI VHA + +V
Sbjct: 45 LFHAMLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYG 104
Query: 51 -CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY-YEEIVNLFYLLIDEGV------- 101
CG L A +FE+M E+NV +W +M+G+Y++ G ++ V LF ++ EGV
Sbjct: 105 KCGTLLDA-QSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITF 163
Query: 102 ---YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---- 154
+ + R GK ++ + + + V +++ + KCG + A F+
Sbjct: 164 LNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPC 223
Query: 155 --------------------EKDF------------------------SNLSLLKHGKEI 170
E F N L+HGK +
Sbjct: 224 RSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHV 283
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ + E DL V +L+ YA+CR + A F ++KQ +L++W+A+
Sbjct: 284 R-ESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAI--------- 333
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
IT F +G AL +F M Q + PN ++ +L G + IH
Sbjct: 334 ---ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIH----- 385
Query: 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350
LI+ GL + + N+L+++YGRC + ++ F+ ++ P
Sbjct: 386 -----------LLITEHGLDDTTTMRNALVNVYGRCES--PDDARTVFDQLEL-----PN 427
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + M+ + + + DD L + M
Sbjct: 428 LISWNSMIGIYVQCERHDDALQLFRTM 454
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 87/371 (23%), Positives = 144/371 (38%), Gaps = 96/371 (25%)
Query: 51 CGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
CG L + F K+ RNV SW M+ Y+ ++E + LF+ ++ EG
Sbjct: 5 CG-SLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVA 63
Query: 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
V +C ++ R G V+ + F N V +L+M+ KCG + A FEE N
Sbjct: 64 VLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKN 123
Query: 161 L-------------------------------------------------SLLKHGKEIH 171
+ L+ GK IH
Sbjct: 124 VVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIH 183
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+++ + D+ VN +L++ Y KC L A F + + + +WN+M++ Y++
Sbjct: 184 S-CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS--- 239
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E +G A F RM Q + + ++ +L AC + + GK + +
Sbjct: 240 -ERSG--------EAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET 290
Query: 292 HIQLSTGVGIALISI-----------QGLG----TGSFVWNSLIDMY---GRCGAIQKNE 333
+L VG ALI++ Q G T W+++I + G CG E
Sbjct: 291 SFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCG-----E 345
Query: 334 GWRYFEMMKKE 344
RYF MM++E
Sbjct: 346 ALRYFRMMQQE 356
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 37/179 (20%)
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252
Y++C L A F KI+ +++VSWN M++ Y + Y + AL F
Sbjct: 1 MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAY------------SSYKSFQEALALFHA 48
Query: 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312
M+ + PN I+L VL +C + + G +H L +G
Sbjct: 49 MLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLE----------------RGFFQN 92
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-----EQYCC---MVDLLAR 363
+ V +L++MYG+CG + + + EM +K AM Q CC V+L R
Sbjct: 93 TLVATALLNMYGKCGTLLDAQSV-FEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTR 150
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
VT+ + C +L G +H++ + CG++ + +F+
Sbjct: 565 VTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDS 624
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
MP R+ SW M+ Y G EE++ L + EGV
Sbjct: 625 MPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGV 661
>gi|302800080|ref|XP_002981798.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
gi|300150630|gb|EFJ17280.1| hypothetical protein SELMODRAFT_115031 [Selaginella moellendorffii]
Length = 483
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 147/585 (25%), Positives = 220/585 (37%), Gaps = 198/585 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ + + C L +L LG +H +I G EL LG +F+ M
Sbjct: 12 TFTSVIEACACLPDLTLGQLLHYRMITLGCELDTVLGTNLINMYSRCDVPDKAIEVFDAM 71
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
++V WT+M+ ++ G E + LF + EGV R K + ++ +
Sbjct: 72 HNKSVVVWTAMIAAHSQQGQGLEALELFKRMDIEGV----------RADKVAFSLVLDV- 120
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
C +NL+ L + +H + +LE D++
Sbjct: 121 -----------------C---------------ANLAALAQARILHAT-VAGTELEQDMV 147
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V N+L++ Y KC L A F K+ K +VSW +++A YA Q G
Sbjct: 148 VKNTLVNMYGKCGKLNEARQVFEKMASKDMVSWTSIIAAYA------------QQGSASA 195
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A E F M Q +T+ V++ C
Sbjct: 196 AFELFHAMQQAGEAIDTVIFVKVMSGC--------------------------------- 222
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G ++ W F M ++Y + P E Y C++DLL R G
Sbjct: 223 ------------------NHAGLLKDARNW--FVSMLQDYGLSPVNENYACILDLLGRLG 262
Query: 366 QFDDTLNFMKKMPFEPS--------SAEPCNPDIAE--HAARHLFELEPLSSG------- 408
Q D + ++ M EP +A + D+ AA+ L +L +S
Sbjct: 263 QLQDVEDLLENMTLEPDFIAWMSFLNACKVHKDMKRGVRAAQRLVQLNRRNSASYVLLSD 322
Query: 409 ------------------------------------KVHSFIAGDTSHSLVHKISEKLMR 432
KVH F +G +H +I +L R
Sbjct: 323 IHAVCGKFDAAAKLRRRIGRDCGKKVPGLSWIEIKDKVHKFASGSRTHPRNDEIFAELQR 382
Query: 433 LYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRM 478
L +++ GY+ K C HSEK A+AFGLIST G+PLRV+KNLR+
Sbjct: 383 LGVLMREAGYVPDTEVVLMDVEEEEKEQVLCYHSEKQAMAFGLISTPSGTPLRVVKNLRV 442
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C DCH+ TK++SK R+I + D RFH F DG CSC DYW
Sbjct: 443 CTDCHTATKFISKITG----RQITVRDANRFHEFKDGFCSCKDYW 483
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 200/466 (42%), Gaps = 126/466 (27%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+ +H +K L+S++ V NS + Y KC ++ F ++ K L++WNA+++GY+
Sbjct: 175 GRSLHGQCVK-GGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYS 233
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G ++ LE + +M + + P+ +L VL++CA + K+G E+
Sbjct: 234 QNGLAYDV------------LELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK 281
Query: 287 YVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLIDMYGRCGAIQ- 330
V + + V A IS+ + S V W ++I YG G +
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEI 341
Query: 331 --------------------------------KNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
++G F MK+EY +EP E Y C+V
Sbjct: 342 GLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS-- 406
DLL RAG+ D+ + F++ MP EP A C N D+AE A + E EP +
Sbjct: 402 DLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIG 461
Query: 407 -----------------------------------------SGKVHSFIAGDTSHSLVHK 425
G+VH F+AGD SH +
Sbjct: 462 YYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEE 521
Query: 426 ISEKLMRLYSEIKKI--------GYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
+ L L + + ++ G HSE+LA+AFG++++ PG+ + VIKNLR
Sbjct: 522 VHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERLAIAFGILNSIPGTEILVIKNLR 581
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH K VSK +R+ ++ D RFH+F DG CSC DYW
Sbjct: 582 VCEDCHVFLKQVSKIV----DRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 33/191 (17%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K ++LSL G+++H H + K E++ V +L+ Y KC + A F + Q
Sbjct: 58 FILKSCASLSLPVSGQQLHCH-VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQ 116
Query: 213 KHLVS--WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+S +NA+++GY T ++ D A F RM +T + +++++ G++
Sbjct: 117 SSQLSVCYNALISGY---------TANSKVTD---AAYMFRRMKETGVSVDSVTMLGLVP 164
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
C + LG+ +HG ++ GL + V NS I MY +CG+++
Sbjct: 165 LCTVPEYLWLGRSLHGQCVK----------------GGLDSEVAVLNSFITMYMKCGSVE 208
Query: 331 KNEGWRYFEMM 341
G R F+ M
Sbjct: 209 A--GRRLFDEM 217
>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
Length = 601
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 145/605 (23%), Positives = 239/605 (39%), Gaps = 162/605 (26%)
Query: 77 MGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRV--GKDVYDYMISI 124
MG Y +++ + LF I+E V K+C+ L D + GK+++ + I+
Sbjct: 1 MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH---HLKKDDLE 181
F + V+ ++ M+ KCG + A+G F++ + NL + + H H++ +L
Sbjct: 61 GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120
Query: 182 SDLLVNNSLMDFYAKCRYLKVA---------HCKFSKIKQKHLVSWNAMLAGYA------ 226
+L + D YA L V H K +++ V NA++ Y
Sbjct: 121 KKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIA 180
Query: 227 -------------LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
L + I F +Y DG A+ + M +++PN + + VL AC+
Sbjct: 181 SAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACS 240
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---------------FVWNS 318
++ GKEIH V AL+++ + F W S
Sbjct: 241 KLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTS 300
Query: 319 LIDMYGRCGAIQ---------------------------------KNEGWRYFEMMKKEY 345
L+ Y + G Q +EG YF M++++
Sbjct: 301 LMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDH 360
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPD--IAEHA 395
+ P Y CM+DLL R G+ + ++ MP+ P SA D I A
Sbjct: 361 WIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARA 420
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
+ + EL P SG ++H
Sbjct: 421 YKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHE 480
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGHSEKLALA 458
F+ GDT+H L +I +L ++ ++ GY +K HSE++AL
Sbjct: 481 FVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALG 540
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
GL+++ G+ L ++KNLR+C DCHS K VSK R++++ D++RFH F G+CS
Sbjct: 541 LGLLTSDAGATLHIVKNLRICPDCHSFFKLVSKM----LHRKVLVRDSHRFHIFQRGSCS 596
Query: 519 CGDYW 523
CGDYW
Sbjct: 597 CGDYW 601
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 149/520 (28%), Positives = 209/520 (40%), Gaps = 148/520 (28%)
Query: 146 MEMASGEFEEKDFSNLSLLKH-----GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
+++ S E +F+ SLLK GK IH H LK L D V L+D YAK +
Sbjct: 119 VQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFG-LGIDPYVATGLVDVYAKGGDV 177
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYG 241
A F ++ ++ LVS AM+ YA G E I G+ Q+G
Sbjct: 178 VSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHG 237
Query: 242 DGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F +++ + +P+ I++ L+AC+Q+ + G+ IH +V I+L+ V
Sbjct: 238 FPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVC 297
Query: 301 IALISIQGLGTGSF----------------VWNSLIDMYGRCGAIQK------------- 331
LI + GS WN++I Y G Q
Sbjct: 298 TGLIDMYS-KCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356
Query: 332 ---------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDL------LARA 364
NEG R FE M +EY ++P +E Y C+V L L RA
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416
Query: 365 GQFDDTLNFMKKMPFEPSSAEPCNPD----IAEHAARHLFELEPLSSG------------ 408
+ +N S C + + A +L L +SG
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASV 476
Query: 409 -------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
KVH F AGD HS +I L ++ I
Sbjct: 477 GDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536
Query: 438 KKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
K GY+ HSE+LA+A+GLIST PGSPL++ KNLR+C DCH
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCH 596
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ TK +SK R+I+M D RFHHF DG+CSCGD+W
Sbjct: 597 TVTKLISKITG----RKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 153/395 (38%), Gaps = 120/395 (30%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------- 60
NP+E T++ + + C + + G +H H++ G+ + ++
Sbjct: 127 NPNE--FTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSA 180
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F++MPER++ S T+M+ Y G E LF D +D+
Sbjct: 181 QKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF----------------DSMCERDIV 224
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF---------SNLSLLKHGKE 169
+ + I L +F K +A G+ + + S + L+ G+
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKL----LAEGKPKPDEITVVAALSACSQIGALETGRW 280
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
IH +K + ++ V L+D Y+KC L+ A F+ +K +V+WNAM+AGYA+ G
Sbjct: 281 IHVF-VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHG 339
Query: 230 FREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
+ ++ AL F+ M T +QP I+ G L ACA H +
Sbjct: 340 YSQD------------ALRLFNEMQGITGLQPTDITFIGTLQACA-----------HAGL 376
Query: 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+ I++ FE M +EY ++
Sbjct: 377 VNEGIRI------------------------------------------FESMGQEYGIK 394
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
P +E Y C+V LL RAGQ +K M + S
Sbjct: 395 PKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADS 429
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 130/477 (27%), Positives = 196/477 (41%), Gaps = 135/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+++H +K L+ ++ V +L++ Y +C + A F +I + +V +NAM+
Sbjct: 145 LEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL F M ++PN I+L VL++CA + LGK
Sbjct: 204 GYARRNRPNE------------ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
IH Y +H V ALI + GS W+++I Y G
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFA-KCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHG 310
Query: 328 AIQKN---------------------------------EGWRYFEMMKKEYNMEPAMEQY 354
+K+ EG +YF M ++ + P+++ Y
Sbjct: 311 KAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHY 370
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
MVDLL+ AG +D F+ K+P P+ + N D+AE + +FEL+
Sbjct: 371 GSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 430
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G VH F +GD S
Sbjct: 431 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 490
Query: 422 LVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSP 466
K+ L + E+K GY+ K I HSEKLA+ FGL++T P
Sbjct: 491 ATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 550
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +RV+KNLR+C DCH+ K +S R+++ D RFHHF DG CSCGD+W
Sbjct: 551 GTTIRVVKNLRVCRDCHNAAKLISLIFG----RKVVXRDVQRFHHFEDGKCSCGDFW 603
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 157/583 (26%), Positives = 229/583 (39%), Gaps = 159/583 (27%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F PK N + + + V L L FE MPERN SWT+M+ Y G+ E
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGEVNLARKL--FEVMPERNEVSWTAMLVGYIQAGHVE 253
Query: 88 EIVNLFYLLID---------------EGVYKACSELKDHRVGKDVYDYMISIK-FEGNAC 131
+ LF + + G+ A + + +D + IK +E N
Sbjct: 254 DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEF 313
Query: 132 VKRPV---LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188
+ + +M + R S + L++L +G+E+H L+ + D+ +
Sbjct: 314 LMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS-FDMDVFAVS 372
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+ Y KC L A F + K +V WN+M ITG+ Q+G GE AL
Sbjct: 373 ALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSM------------ITGYAQHGLGEQALG 420
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
F M M P+ I+ G L AC+ K
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVK----------------------------- 451
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
EG F M ++ P E Y CMVDLL R+G +
Sbjct: 452 ------------------------EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
+ + +K MP EP + C N +IAE AA+ L ELEP ++G
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYT 547
Query: 409 ---------------------------------KVHSFIAGDT----SHSLVHKISEKLM 431
+VH F +GD H+ + +I EKL
Sbjct: 548 SVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLD 607
Query: 432 RLYSE----------IKKIGYMKRIPACG-HSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
L E + I ++ + HSE+ A+A+GL+ G P+RV+KNLR+CG
Sbjct: 608 GLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCG 667
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K ++K REI++ D RFHHF DG CSC DYW
Sbjct: 668 DCHSAIKLIAKITS----REIVLRDANRFHHFKDGFCSCRDYW 706
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/485 (27%), Positives = 200/485 (41%), Gaps = 139/485 (28%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA----LGG 229
H+ K E D + +SL+ YA + L A F+ + +VSWNAM+ GY +G
Sbjct: 191 HVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGH 250
Query: 230 FR---------------EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
R I G+ G AL F +M ++P ++ +L+ACA
Sbjct: 251 ARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 310
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG------LGTGSF---------VWNSL 319
+ G +H Y+ + I++++ VG AL+ + L T F WN++
Sbjct: 311 LGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTI 370
Query: 320 ID---MYGRCGAIQK------------------------------NEGWRYFEMMKKEYN 346
I ++G Q+ +EG + + M Y
Sbjct: 371 IAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYG 430
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAA 396
+EP +E Y C++DLLARAG ++ + + MP EP+ + C N ++ E
Sbjct: 431 IEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVG 490
Query: 397 RHLFELEPLSSGK-------------------------------------------VHSF 413
+ L L+P SG+ VH F
Sbjct: 491 KRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRF 550
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKK-IGYM--------------KRIPACGHSEKLALA 458
+AGD SH +KI EKL +++ +K IGY K HSEKLA+A
Sbjct: 551 VAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIA 610
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
+GL+ +R++KNLR+C DCH K +SK REII+ D RFHHF DG CS
Sbjct: 611 YGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYG----REIIVRDRNRFHHFEDGECS 666
Query: 519 CGDYW 523
C D+W
Sbjct: 667 CLDFW 671
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/592 (24%), Positives = 227/592 (38%), Gaps = 201/592 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFL 59
PD T T++ + + C ++ +VH +I CG + +C
Sbjct: 103 PD--TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIAR 160
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+KMP R++ +W +M+ ++ G ++E + + + E V DV
Sbjct: 161 QVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENV--------------DV-- 204
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
D F G + + +L L G ++H +++
Sbjct: 205 ------------------DGFTLVGLISSCA---------HLGALNIGVQMH-RFARENG 236
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ L V N+L+D YAKC L A F ++++K + +WN+M+ GY +
Sbjct: 237 LDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGV------------ 284
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+G G A+ F +M++ +QPN ++ G+L C+
Sbjct: 285 HGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSH------------------------- 319
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
QGL EG +YF +M ++ ++P ++ Y C+VD
Sbjct: 320 -------QGL---------------------VQEGVKYFNLMSSKFRLKPEVKHYGCLVD 351
Query: 360 LLARAGQFDDTLNFMKKMPFEPSS-----AEPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAG+ D L + S C N I E A L EL S+G
Sbjct: 352 LYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDC 411
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VH F+ D SH ++
Sbjct: 412 ILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVY 471
Query: 428 EKLMRLYSEIKKIGYMK----------------RIPACGHSEKLALAFGLISTSPGSPLR 471
EKL + + GY+ + HSEKLA+AFGL T+ G+ +R
Sbjct: 472 EKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIR 531
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+C DCHS K VS A REII+ D RFHHF G CSC DYW
Sbjct: 532 IVKNLRVCRDCHSFIKAVSVA----FNREIIVRDRVRFHHFKGGECSCNDYW 579
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAM 221
LK ++IH H + L + + N L++F A +A+ + F +++ +WN++
Sbjct: 17 LKRLRKIHAHVIV-SGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSI 75
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKL 280
I GF Q A+ F+++M+ P+T + S VL AC ++K +
Sbjct: 76 ------------IRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERK 123
Query: 281 GKEIHGYVLR-----------HHIQLSTGVGIALISIQGL----GTGSFVWNSLIDMYGR 325
KE+HG V+R + ++ + +G+ I+ Q WN++I + +
Sbjct: 124 CKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFSQ 183
Query: 326 CGAIQKNEGWRYFEMMKKE 344
G Q E + + M+ E
Sbjct: 184 QGLHQ--EALQTYNQMRSE 200
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/617 (25%), Positives = 250/617 (40%), Gaps = 203/617 (32%)
Query: 14 DLTNPDECTVTYAL-----------------IFQRCPKLNNLELGIQVHAHLIVCGVELC 56
D +NP E + YA + + C KL + G QVH ++ +
Sbjct: 84 DTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFD 143
Query: 57 AFLG------------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98
F+G +F++MP R+V SW SM+ Y G E LF + +
Sbjct: 144 PFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPE 203
Query: 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF 158
+ +C+ + D GK+ M+S+ + VL
Sbjct: 204 RDLV-SCNAMIDG-YGKE----MLSLGLRPDGPAIVSVLSAI------------------ 239
Query: 159 SNLSLLKHGKEIHPH-HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-QKHLV 216
++L ++ GK +H + + K +L S + ++L+D Y+KC Y++ A+ F I ++++
Sbjct: 240 ADLGFVEEGKWLHAYVSMNKIELSSGF-IGSALIDMYSKCGYIENAYHVFRSISHRRNIG 298
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
WN+M++G A+ G E AL+ F M + D++PN I+ G+L+ C+
Sbjct: 299 DWNSMISGLAIHGLARE------------ALDIFVEMERMDIEPNEITFLGLLSTCS--- 343
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336
HG ++ EG
Sbjct: 344 --------HGGLVE------------------------------------------EGQF 353
Query: 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP----------SSAEP 386
YFE M ++Y + P ++ Y CM+DL RAG+ +D L ++ MPFE +S +
Sbjct: 354 YFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKH 413
Query: 387 CNPDIAEHAARHLFELEP------------------------------------------ 404
+ +I + AA EL P
Sbjct: 414 GHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSS 473
Query: 405 -LSSGKVHSFIAG---DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACG---------- 450
L +GKVH F+ G D+S+S ++ K+ + S +K GY +
Sbjct: 474 MLVNGKVHEFLLGKELDSSYS--GQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKES 531
Query: 451 ----HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDN 506
HSEK+A+AFGLI + +P+ ++KNLR+C DCH K VSK R+IIM D
Sbjct: 532 LLNLHSEKMAIAFGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKV----YNRQIIMRDQ 587
Query: 507 YRFHHFVDGACSCGDYW 523
RFHHF +G CSC +YW
Sbjct: 588 NRFHHFENGCCSCNEYW 604
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 219/551 (39%), Gaps = 146/551 (26%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKD-- 157
K+CS KD +G ++ + ++ + N V + M+ +CGR E A F+ +D
Sbjct: 131 KSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVV 190
Query: 158 --------FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY--AKCRYLKVAHCKF 207
F+ + L E+ + D ++ AK ++ F
Sbjct: 191 SWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVF 250
Query: 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K L+SWNAMLA YA F + A+E F M + +++P++I+L+
Sbjct: 251 DNMQFKELISWNAMLAVYANNEFHVK------------AVELFMLMEKDEVEPDSITLAT 298
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTG 312
VL C ++ F +GK IH + R ++ + + AL+ +
Sbjct: 299 VLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARD 358
Query: 313 SFVWNSLIDMYGRCGAIQKN---------------------------------EGWRYFE 339
W S+I YG+ G ++ +G YF+
Sbjct: 359 VISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFD 418
Query: 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NP 389
M Y++ P E Y CMVDLL RAG ++ +F+ M EP+ + C N
Sbjct: 419 SMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNM 478
Query: 390 DIAEHAARHLFELEPLSSG----------------------------------------- 408
DI AA +LF L P +G
Sbjct: 479 DIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVEL 538
Query: 409 --KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHS 452
+VH+F GD H I KL L +I+ +GY + A HS
Sbjct: 539 GDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHS 598
Query: 453 EKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF 512
EKLA+AF L++TSPG+ +RV NLR C DCH K +S REI++ D R HH
Sbjct: 599 EKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITC----REIVLKDTNRIHHI 654
Query: 513 VDGACSCGDYW 523
V G CSCGDYW
Sbjct: 655 VQGVCSCGDYW 665
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 3 IKNVTL-LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC----- 56
+K V L +L D PD ++T A + C +L+ +G ++H I+ +C
Sbjct: 275 VKAVELFMLMEKDEVEPD--SITLATVLPPCGELSAFSVGKRIHE--IIKRKNMCPNLLL 330
Query: 57 --AFLGM-------------FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG- 100
A + M F+ M R+V SWTS++ Y G+ E V+LF ++ +G
Sbjct: 331 ENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGL 390
Query: 101 ---------VYKACSELKDHRVGKDVYDYMIS 123
V ACS GK +D M S
Sbjct: 391 EPDSIAFVAVLAACSHAGLLADGKHYFDSMTS 422
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 165/716 (23%), Positives = 270/716 (37%), Gaps = 222/716 (31%)
Query: 1 WVIKNVTLLLQSMDLTNPDEC---TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA 57
W + + DL +C VT+ + C + +L Q+HAH++ G E
Sbjct: 404 WAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDV 463
Query: 58 FL------------------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99
L +FE + ER+V +W SM+ + G YE + L+ ++ E
Sbjct: 464 VLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLE 523
Query: 100 G----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
G V AC + + R Y + + E + + + + +CG ++ A
Sbjct: 524 GTKPDKITYLAVLDACQSVSEAR------RYAATFELELDIAARNAAVSAYARCGSLKEA 577
Query: 150 SGEFEEKDFSN------------------------------------------------- 160
F+ + N
Sbjct: 578 KAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSS 637
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
L L G+++H L ++ E++L +N++++ Y KC L A +F K+ ++ ++SWN
Sbjct: 638 LKDLTRGRQLHARILLENIHEANL--SNAVINMYGKCGSLDEAMDEFVKMPERDVISWNT 695
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+A YA Q+G G ALEFF +M P+ + G + AC V L
Sbjct: 696 MIATYA------------QHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLAL 743
Query: 281 GKEIHGYVLRHH--IQLSTGVGIALIS--------------------------------- 305
GK IH V ++ GV AL++
Sbjct: 744 GKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAAC 803
Query: 306 -----------------IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
+QG + +++L+ R G + K+ G R F+ + + Y +
Sbjct: 804 AQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVV-KDGGRRIFDALGRVYPVS 862
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP--DIAE--HAARH 398
+ E Y CMV++L RAG+ ++ ++ MP + S A CN D+ AA
Sbjct: 863 ASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRAANR 922
Query: 399 LFELEPLS---------------------------------------------SGKVHSF 413
+L+P S + +VH F
Sbjct: 923 AQQLDPGSFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNNRVHEF 982
Query: 414 IAGDT--SHSLVHKISEKLMRLYS-EIKKIGYMK------RIPACGHSEKLALAFGLIST 464
D + KI +L RL S +++ G K I C HSEK+A+ FG++ST
Sbjct: 983 GEDDDRLQGPRLDKIRGELQRLSSLAVEEGGICKDENARAHILGCCHSEKVAIGFGIVST 1042
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHF-VDGACSC 519
G +R++KNLR C DCH+ K+VS R +REI + D Y H F +G+CSC
Sbjct: 1043 PAGQLIRIVKNLRACHDCHAFAKFVS----RRIQREISVRDPYGLHCFHTNGSCSC 1094
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 90/444 (20%), Positives = 168/444 (37%), Gaps = 116/444 (26%)
Query: 13 MDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-------------CAFL 59
+D T PD ++ + C L G +H +++ G+E C +
Sbjct: 120 LDGTKPD--AFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVGNAIVNLYGKCGRV 177
Query: 60 ----GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKA 104
+FE++PERN+ SW +++ G+ ++ + +F L+ +G V A
Sbjct: 178 HEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDA 237
Query: 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164
CS L D GK ++ +I F+ V +++M+ KCG ++ A FE+ ++ +
Sbjct: 238 CSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSV 297
Query: 165 KHGKEI-----HPHHL------------------------------------------KK 177
I H HL K
Sbjct: 298 YSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKIFARVKH 357
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI-KQKHLVSWNAMLAGYALGGFREEITG 236
LE D + + + +AK L A F + +++VSW M+ YA GF
Sbjct: 358 LGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFI----- 412
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
A + + RM D +PN ++ V+ +C + + ++IH +++
Sbjct: 413 -------RAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMV------- 455
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
G + + L+ MYG+CG++ + W FE +K E ++ +
Sbjct: 456 ---------ASGFESDVVLQVCLVTMYGKCGSV--DSAWSIFENLK-----ERSVVAWNS 499
Query: 357 MVDLLARAGQFDDTLNFMKKMPFE 380
M+ A G ++ +L ++M E
Sbjct: 500 MLSAFASNGCYERSLKLYERMLLE 523
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 95/431 (22%), Positives = 162/431 (37%), Gaps = 119/431 (27%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMP 66
YA + Q+C + + G VH H++ G + +L +FE +P
Sbjct: 29 YASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELLP 88
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKD 116
NVFSWT+++ Y G+ E++ F + +G V ACS GK
Sbjct: 89 CPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF--------------- 158
++D ++ E V +++++ KCGR+ A FE E++
Sbjct: 149 IHDCVVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGH 207
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
SNL L GK H + + +S L V
Sbjct: 208 CKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTH-ERIIRTGFDSYLFVG 266
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLV---SWNAMLAGYALGGFREEITGFTQYGDGE 244
NSL++ Y KC + A F K++ + ++ SW ++A +A G E
Sbjct: 267 NSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLE----------- 315
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A F +M + PN ++ VL AC + ++I V ++L T +G A +
Sbjct: 316 -AFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQC---EKIFARVKHLGLELDTTLGTAFV 371
Query: 305 S--------------IQGLGTGSFV--WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348
S + LG+ V W +I Y + G I+ F++ K+ + E
Sbjct: 372 STFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRA-----AFDLYKR-MDCE 425
Query: 349 PAMEQYCCMVD 359
P + ++D
Sbjct: 426 PNAVTFMAVMD 436
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK +H H L + + N L+ YAKC L+ A F + ++ SW A++ YA
Sbjct: 45 GKLVHQHILSSG-CGVNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYA 103
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
G E+ G FF +M +P+ S VL AC+ GK IH
Sbjct: 104 KEGHLREVLG------------FFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHD 151
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
V+ + G+ T V N+++++YG+CG + +E FE +
Sbjct: 152 CVV----------------LAGMET-QVVGNAIVNLYGKCGRV--HEAKAVFERLP---- 188
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382
E + + ++ A+ G D + + M + S
Sbjct: 189 -ERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGS 223
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 152/596 (25%), Positives = 240/596 (40%), Gaps = 166/596 (27%)
Query: 54 ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
E+ + F MP RN+ S ++ + G + + +F +++ V
Sbjct: 7 EIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVA----------- 55
Query: 114 GKDVYDYMIS--IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK------ 165
++ M+S I+FE N L +F EM F +F+ S+L+
Sbjct: 56 ---TWNAMVSGLIQFEFN----ENGLFLF-----REMHELGFLPDEFTLGSVLRGCAGLR 103
Query: 166 ---HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
GK++H + LK E +L+V +SL Y K L ++ +++V+WN ++
Sbjct: 104 ASYAGKQVHAYVLKYG-YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLI 162
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
AG A Q G E L+ ++ M + ++P+ I+L V+++ A++ G+
Sbjct: 163 AGNA------------QNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQ 210
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGRCG 327
+IH ++ + V +LIS+ S +W+S+I YG G
Sbjct: 211 QIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHG 270
Query: 328 AIQ---------------------------------KNEGWRYFEMMKKEYNMEPAMEQY 354
+ K +G +F++M ++Y ++P +E Y
Sbjct: 271 RGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHY 330
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
C+VDLL R+G D+ ++ MP E C N D+A A + L P
Sbjct: 331 TCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNP 390
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
S +V F GD SH
Sbjct: 391 QDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHP 450
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+ +I L L E+K GY+ K HSEKLA+AFGL++ PG
Sbjct: 451 MSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPG 510
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SP+RV+KNLR+C DCH K +S REII+ D RFHHF G CSCGDYW
Sbjct: 511 SPIRVMKNLRICSDCHVAIKLISDINN----REIIVRDTSRFHHFKHGKCSCGDYW 562
>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 152/587 (25%), Positives = 228/587 (38%), Gaps = 198/587 (33%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL--------------GMFE 63
+TY + L +L L +QVH+ ++ G VE C L +F+
Sbjct: 237 NLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFD 296
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+N+F T++M Y +EE +NLF S++ V + Y + I
Sbjct: 297 DTHAQNIFLNTTIMDAYFQDKSFEEALNLF------------SKMDTKEVPPNEYTFAIL 344
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+ + LSLLK G +H LK +
Sbjct: 345 LN-------------------------------SIAELSLLKQGDLLHGLVLK-SGYRNH 372
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
++V N+L++ YAK ++ A FS + + +V+WN M I+G + +G G
Sbjct: 373 VMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTM------------ISGCSHHGLG 420
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
ALE F RMI T PN I+ GVL AC+ + G+V
Sbjct: 421 REALEAFDRMIFTGEIPNRITFIGVLQACSHI----------GFV--------------- 455
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+G YF + K+++++P ++ Y C+V LL++
Sbjct: 456 ----------------------------EQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSK 487
Query: 364 AGQFDDTLNFMKKMPFE------PSSAEPC----NPDIAEHAARHLFELEPLSSG----- 408
AG F D +FM+ P E + C N + + A + E P SG
Sbjct: 488 AGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLL 547
Query: 409 --------------------------------------KVHSFIAGDTSHSLVHKISEKL 430
+ H F+A D H + I K+
Sbjct: 548 SNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKV 607
Query: 431 MRLYSEIKKIGYMKRIPACGH--------------SEKLALAFGLISTSPGSPLRVIKNL 476
+ S+IK +GY + H SEKLA+A+GLI T SPL V KN+
Sbjct: 608 KEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNV 667
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+C DCHS K +SK K R I++ D+ RFHHF+DG CSC DYW
Sbjct: 668 RICDDCHSAIKLISKISK----RYIVIRDSNRFHHFLDGQCSCCDYW 710
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 159 SNLSLLKHGKEIHPHHL--KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216
+N S L+ G+ IH H + + D NSL++ Y KCR A F + ++++V
Sbjct: 42 ANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMPERNVV 101
Query: 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276
SW AM+ GY GF D E F S + +PN + V +C+
Sbjct: 102 SWCAMMKGYQNSGF-----------DFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSG 150
Query: 277 GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA 328
+ GK+ HG L++ GL + FV N+L+ MY C
Sbjct: 151 RIEEGKQFHGCFLKY----------------GLISHEFVRNTLVYMYSLCSG 186
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 72/324 (22%), Positives = 115/324 (35%), Gaps = 94/324 (29%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGV---------------------ELCAFLGMFEKMP 66
+ + C + L +G +HAHLIV E +F+ MP
Sbjct: 37 LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
ERNV SW +MM Y G+ E++ LF S+ F
Sbjct: 97 ERNVVSWCAMMKGYQNSGFDFEVLKLFK----------------------------SMFF 128
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
G + RP + F+ A+ F K SN ++ GK+ H LK L S V
Sbjct: 129 SGES---RP--NEFV-------ATVVF--KSCSNSGRIEEGKQFHGCFLKYG-LISHEFV 173
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY-ALGGFREEITGFTQYGDGET 245
N+L+ Y+ C A + L +++ L+GY G F+E
Sbjct: 174 RNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKE------------- 220
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
L+ + D N ++ L + ++ L ++H ++R
Sbjct: 221 GLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRF-------------- 266
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI 329
G +LI+MYG+CG +
Sbjct: 267 --GFNAEVEACGALINMYGKCGKV 288
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 144/589 (24%), Positives = 226/589 (38%), Gaps = 196/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV-----------YKACSELK 109
+F M RN +W++++G + + E NLF ++ EG+ + C+ L
Sbjct: 261 VFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLA 320
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KDF-------- 158
D R+G ++ + + +L M+ K G + A+ F+E KD
Sbjct: 321 DLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLS 380
Query: 159 -------------------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
S+L+ L+HG+ H + + L
Sbjct: 381 GYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG-LA 439
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ + NSL+D YAKC + ++ F K+ + +VSWN M+AGY + G
Sbjct: 440 LETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGL----------- 488
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
G+ A F M +P+ ++ ++AAC+
Sbjct: 489 -GKEATTLFLSMKNQGFEPDDVTFICLIAACSH--------------------------- 520
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
GL T EG +F+ M +Y + P ME Y CMVDLL
Sbjct: 521 -----SGLVT---------------------EGKHWFDTMTHKYGILPRMEHYICMVDLL 554
Query: 362 ARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSGK-- 409
AR G D+ F++ MP + + C N D+ + +R + +L P +G
Sbjct: 555 ARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFV 614
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H+F+ GD SH I
Sbjct: 615 LLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYH 674
Query: 429 KLMRLYSEIKKIGYMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIK 474
+L + +IKK+GY HSEKLA+AFG++S + + V K
Sbjct: 675 ELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTK 734
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ KY++ R R II+ D RFHHF +G CSCGD+W
Sbjct: 735 NLRVCGDCHTAIKYMTLV----RNRTIIVRDANRFHHFKNGQCSCGDFW 779
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/396 (19%), Positives = 153/396 (38%), Gaps = 106/396 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF----YLLIDEGVY------KACSELKD 110
+F+++P + ++ +++ Y+ G + ++L+ Y + Y KACS L D
Sbjct: 55 VFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALAD 114
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE-------------KD 157
G+ ++ + ++ + V ++D++I+C R A+ F +
Sbjct: 115 LCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAG 174
Query: 158 FSNLSLLKH------------------------------------GKEIHPHHLKK--DD 179
++N + H G +H + L+ D
Sbjct: 175 YANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQ 234
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
E +L+ +L+D YAKC++L A F + ++ V+W+A++ G+ L E
Sbjct: 235 NEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTE------ 288
Query: 240 YGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A F M+ M + S++ L CA + ++G ++H
Sbjct: 289 ------AFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLH------------- 329
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358
AL++ G+ NSL+ MY + G I NE F+ + + + Y ++
Sbjct: 330 ---ALLAKSGIHADLTAGNSLLSMYAKAGLI--NEATMLFDEIAIKDTIS-----YGALL 379
Query: 359 DLLARAGQFDDTLNFMKKMPFEPSSAEPCN--PDIA 392
+ G+ ++ KKM + CN PDIA
Sbjct: 380 SGYVQNGKAEEAFLVFKKM-------QACNVQPDIA 408
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 28/142 (19%)
Query: 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL------------ 55
L+ + M N T + C L L+ G H +I+ G+ L
Sbjct: 393 LVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMY 452
Query: 56 --CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
C + + F+KMP R++ SW +M+ Y + G +E LF + ++G
Sbjct: 453 AKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFI 512
Query: 101 -VYKACSELKDHRVGKDVYDYM 121
+ ACS GK +D M
Sbjct: 513 CLIAACSHSGLVTEGKHWFDTM 534
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 152/604 (25%), Positives = 236/604 (39%), Gaps = 210/604 (34%)
Query: 12 SMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFL-------- 59
S PD T T++ + + C + +VH +I G V LC L
Sbjct: 118 SASHARPD--TYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNG 175
Query: 60 ------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113
+FE+MP R++ SW SM+ Y G +EE + ++ +++ V
Sbjct: 176 LIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMY------------DQMRISNV 223
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G D + ++S+ ++C L M ++ R +GE
Sbjct: 224 GFDGFT-LVSLL---SSCAHVGALHMGVQMHRF---AGE--------------------- 255
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L ++ V N+L+D YAKC L A F+ + ++ + +WN+M+ GY +
Sbjct: 256 ----RRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGV------ 305
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
+G G+ A+ FF M+ ++PN+I+ G+L C+
Sbjct: 306 ------HGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSH------------------- 340
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
QGL EG +YF MM E+N++P ++
Sbjct: 341 -------------QGL---------------------VKEGVQYFHMMSSEFNLKPGIKH 366
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAEHAARHLF 400
Y CMVDL RAG+ + L ++ PS +P N +I E A R+L
Sbjct: 367 YGCMVDLFGRAGKLKEALEVIRS---SPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLV 423
Query: 401 ELEPLSSG-------------------------------------------KVHSFIAGD 417
+L L +G +VH F+ D
Sbjct: 424 QLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDD 483
Query: 418 TSHSLVHKISEKLMRLYSEIKKIGY------MKRIPACG------------HSEKLALAF 459
SH +I KL + +GY + P HSEKLA+A+
Sbjct: 484 KSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTSYHSEKLAIAY 543
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL T G+ L ++KNLR+C DCH+ TK+VS A +REII+ D RFHHF G CSC
Sbjct: 544 GLARTPEGTSLLIVKNLRVCRDCHNFTKFVSMA----FDREIIVRDRVRFHHFKGGHCSC 599
Query: 520 GDYW 523
++W
Sbjct: 600 KEFW 603
>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
Length = 487
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/481 (28%), Positives = 205/481 (42%), Gaps = 135/481 (28%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
L+ L+ GK IH L+ LES+ +V +L++ Y K L A F + +K LVSW A
Sbjct: 24 LADLRLGKLIHSCVLEAG-LESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTA 82
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM---QPNTISLSGVLAACAQVKG 277
+++ Y+ RE++ AL+ F M + +P+ + +L ACA +
Sbjct: 83 LMSAYS----REDLY--------REALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSA 130
Query: 278 FKLGKEIHGYVLRHHIQLSTGV-GIALISIQG---------------LGTGSFVWNSLID 321
G+ H + S GV G+ +I++ G + W ++I
Sbjct: 131 AAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIIS 190
Query: 322 MYGRCGAIQKN---------------------------------EGWRYFEMMKKEYNME 348
Y G +++ +GW +F + KE+ +E
Sbjct: 191 GYAHHGHSEESLLMFWRMQQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVE 250
Query: 349 PAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARH 398
P + Y CM+DLL R+G + +++MPF+ ++ C + + + AA
Sbjct: 251 PGEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIFLAACKVHSDTERGKRAAEK 310
Query: 399 LFELEPLSSG------------------------------------------KVHSFIAG 416
+ ELEP+ + +VH F AG
Sbjct: 311 VLELEPVPAAYVSLSNIYAAAGEWDQVDRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAG 370
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLI 462
D SH +I L L +++ GY+ K C HSEKLA+AFGL+
Sbjct: 371 DKSHPRAAEIYGLLESLTRQMEGSGYVPDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLL 430
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
ST GS LR+IKNLR+CGDCH+ K+VS+ REI M D+ RFHHF DG CSCGDY
Sbjct: 431 STPAGSSLRIIKNLRVCGDCHTAAKFVSRIAG----REIFMRDSQRFHHFQDGHCSCGDY 486
Query: 523 W 523
W
Sbjct: 487 W 487
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 167/695 (24%), Positives = 262/695 (37%), Gaps = 213/695 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGMFEKM------------- 65
T+ + + C L L+LG +H H + G+ + A L M+ K
Sbjct: 109 TFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSI 168
Query: 66 --PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD-----------HR 112
+R++ +W +M+ ++ + + ++ + GV S L H+
Sbjct: 169 SHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQ 228
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------------ 160
GK ++ Y I F N ++ +LDM+ KC + A F + N
Sbjct: 229 -GKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYV 287
Query: 161 -------------------------------------LSLLKHGKEIHPHHLKKDDLESD 183
L+ LK GK++H H + K ++ D
Sbjct: 288 LHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCH-MIKSGMDLD 346
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V NSL+ YAKC + A ++ K VS++A+ I+G Q G
Sbjct: 347 TTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAI------------ISGCVQNGYA 394
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
E AL F +M + + P ++ +L AC+ + + G HGY + T + A+
Sbjct: 395 EKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAI 454
Query: 304 ISIQ---GLGTGS------------FVWNSLIDMYGRCGAIQK----------------- 331
I + G T S WN++I YG G +
Sbjct: 455 IDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDD 514
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT----- 370
EG +F M + +N++P M Y CMVDLLARAG D+
Sbjct: 515 VTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQ 574
Query: 371 -LNFMKKMPFEPSSAEPC----NPDIAEHAARHLFELEPLS------------------- 406
+ F+ + + C N ++ E ++ + L P
Sbjct: 575 RMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDD 634
Query: 407 ------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
SG +H FI G SH I++KL L ++KK+GY
Sbjct: 635 AAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGY 694
Query: 443 M--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKY 488
K HSEK+A+AFG+++TSP S + V KNLR+C DCHS K+
Sbjct: 695 RADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKF 754
Query: 489 VSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++ EREI + D RFHHF DG C+C D+W
Sbjct: 755 ITLLT----EREITVRDASRFHHFKDGICNCQDFW 785
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 91/345 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F+++P+ +V W M+ Y G +++ + L+ ++ GV KACS L+
Sbjct: 63 VFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQA 122
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF-----EEKD-------- 157
++G+ ++ + + + V +L M+ KCG + A F +++D
Sbjct: 123 LQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMI 182
Query: 158 --FSNLSL-----------------------------------LKHGKEIHPHHLKKDDL 180
FS +L L GK IH ++++
Sbjct: 183 AAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFF 242
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ ++++ +L+D YAKC L A F+ + +K+ V W+AM+ GY L +
Sbjct: 243 D-NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL------------H 289
Query: 241 GDGETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
AL + M+ + P +L+ +L ACAQ+ K GK++H ++++ + L T V
Sbjct: 290 DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTV 349
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
G NSLI MY +CG + G+ EM+ K+
Sbjct: 350 G----------------NSLISMYAKCGIMDNAVGF-LDEMIAKD 377
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 77/196 (39%), Gaps = 35/196 (17%)
Query: 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR 198
M I+C + E+ S + + HPH + D + L ++
Sbjct: 1 MRIRCLKREVVSILLINWRQRHRQIRSFSPHPHPHRVSDSDAAA-----TQLARYHISRN 55
Query: 199 YLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-FREEITGFTQYGDGETALEFFSRMIQTD 257
+++A F +I + +V WN M+ YA G F++ I + M+Q
Sbjct: 56 EIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSI-------------YLYLHMLQLG 102
Query: 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317
+ P + +L AC+ ++ +LG+ IH + I GL +V
Sbjct: 103 VTPTNFTFPFLLKACSSLQALQLGRLIHTHA----------------HILGLSMDLYVST 146
Query: 318 SLIDMYGRCGAIQKNE 333
+L+ MY +CG + + +
Sbjct: 147 ALLHMYAKCGHLYQAQ 162
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 143/592 (24%), Positives = 226/592 (38%), Gaps = 201/592 (33%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFL 59
PD T T++ + + C ++ +VH +I CG + +C
Sbjct: 103 PD--TFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIAR 160
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F+KMP R++ +W +M+ ++ G ++E + + + E V
Sbjct: 161 QVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQMRSENVD----------------- 203
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+D F G + + +L L G ++H +++
Sbjct: 204 -----------------IDGFTLVGLISSCA---------HLGALNIGVQMH-RFARENG 236
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
L+ L V N+L+D YAKC L A F ++++K + +WN+M+ GY +
Sbjct: 237 LDQSLYVGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGV------------ 284
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
+G G A+ F +M++ +QPN ++ G+L C+
Sbjct: 285 HGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSH------------------------- 319
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359
QGL EG +YF +M ++ ++P ++ Y C+VD
Sbjct: 320 -------QGL---------------------VQEGVKYFNLMSSKFRLKPEVKHYGCLVD 351
Query: 360 LLARAGQFDDTLNFMKKMPFEPSS-----AEPC----NPDIAEHAARHLFELEPLSSG-- 408
L RAG+ D L + S C N I E A L EL S+G
Sbjct: 352 LYGRAGKLDKALEIVSNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDC 411
Query: 409 -----------------------------------------KVHSFIAGDTSHSLVHKIS 427
+VH F+ D SH ++
Sbjct: 412 ILLATIYAGEKDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVY 471
Query: 428 EKLMRLYSEIKKIGYMK----------------RIPACGHSEKLALAFGLISTSPGSPLR 471
EKL + + GY+ + HSEKLA+AFGL T+ G+ +R
Sbjct: 472 EKLREVIHQASFFGYVGDESISSLDMLSTMETLKTSCTYHSEKLAIAFGLARTADGTQIR 531
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++KNLR+C DCHS K VS A REII+ D RFHHF G CSC DYW
Sbjct: 532 IVKNLRVCRDCHSFIKAVSVA----FNREIIVRDRVRFHHFKGGECSCNDYW 579
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHLVSWNAM 221
LK ++IH H + L + + N L++F A +A+ + F +++ +WN++
Sbjct: 17 LKRLRKIHAHVIV-SGLHHHVPIANKLLNFCAISVSGSLAYAQLLFHQMECPQTEAWNSI 75
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKL 280
I GF Q A+ F+++M+ P+T + S VL AC ++K +
Sbjct: 76 ------------IRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERK 123
Query: 281 GKEIHGYVLR-----------HHIQLSTGVGIALISIQGL----GTGSFVWNSLIDMYGR 325
KE+HG V+R + ++ + +G I+ Q WN++I + +
Sbjct: 124 CKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQ 183
Query: 326 CGAIQKNEGWRYFEMMKKE 344
G Q E + + M+ E
Sbjct: 184 QGLHQ--EALQTYNQMRSE 200
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 151/585 (25%), Positives = 231/585 (39%), Gaps = 198/585 (33%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T++ I + C + E G Q+HA + ++ F+G F
Sbjct: 331 TFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHST 390
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+ +V SWTS++ + G +E + LF+ L+ G + ++ ISI
Sbjct: 391 PKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSG--------------RKPDEFTISIM 436
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+AC +NL+ +K G++IH + +K + + +
Sbjct: 437 L--SAC---------------------------ANLAAVKSGEQIHAYAIKTG-IGNFTI 466
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ NS + YAKC + A+ F + K +VSW+ M++ A Q+G +
Sbjct: 467 IQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNA------------QHGCAKE 514
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A++ F M + + PN I+ GVL AC+ HG ++
Sbjct: 515 AVDLFELMKGSGIAPNHITFLGVLVACS-----------HGGLVE--------------- 548
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
EG RYFE+MKK++ + P ++ C+VDLL RAG
Sbjct: 549 ---------------------------EGLRYFEIMKKDHGITPNVKHSACIVDLLGRAG 581
Query: 366 QFDDTLNFMKKMPFE------PSSAEPCN----PDIAEHAARHLFELEPLSSGK------ 409
+ + +F+ FE S C D + A + ELEP ++
Sbjct: 582 RLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYN 641
Query: 410 -------------------------------------VHSFIAGDTSHSLVHKISEKLMR 432
VHSF+AGD SH I +L
Sbjct: 642 IYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQLEE 701
Query: 433 LYSEIKKIGYM--KRIPACG------------HSEKLALAFGLISTSPGSPLRVIKNLRM 478
+ EIKK+ Y+ K + HSEKLA+ FG+IS +P+RV+KNLR
Sbjct: 702 MLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRS 761
Query: 479 CGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
C CH K S+ E REII+ D RFH F DG+CSCGDYW
Sbjct: 762 CWHCHETMKLFSRLEN----REIILRDPIRFHRFRDGSCSCGDYW 802
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 105/469 (22%), Positives = 197/469 (42%), Gaps = 109/469 (23%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+VTY + Q + +L G H H+I + C FL +F+
Sbjct: 19 SVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFD 78
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFY------LLIDEGVY----KACSELKDHRV 113
+MP+RNV SW S++ Y +G+Y E++NLF L +D+ + C D R+
Sbjct: 79 RMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRL 138
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD---------------- 157
G+ ++ + G + ++DM+ KCGR++ A FE D
Sbjct: 139 GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 198
Query: 158 -FSN-------LSLLKHGKEIHPHHLK-------------------------KDDLESDL 184
SN + +L+HG ++ + L K L+ D+
Sbjct: 199 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 258
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
+V +L+D YAK L+ A F + ++V +NAM+A GF + T ++ +
Sbjct: 259 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIA-----GFLQMETMADEFAN-- 311
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ F M M+P+ + S +L AC+ ++ F+ GK+IH + ++++Q
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQ---------- 361
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364
+ F+ N+L+++Y G+I+ +G + F K + + ++ +
Sbjct: 362 ------SDEFIGNALVELYSLSGSIE--DGLKCFHSTPK-----LDVVSWTSLIVGHVQN 408
Query: 365 GQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSF 413
GQF+ L ++ F + I A +L ++ S ++H++
Sbjct: 409 GQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVK--SGEQIHAY 455
>gi|242072952|ref|XP_002446412.1| hypothetical protein SORBIDRAFT_06g015580 [Sorghum bicolor]
gi|241937595|gb|EES10740.1| hypothetical protein SORBIDRAFT_06g015580 [Sorghum bicolor]
Length = 317
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 160/384 (41%), Gaps = 136/384 (35%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
FS++ ++ VSWN + IT +Q+G G AL+ F +M Q ++PN ++
Sbjct: 3 FSEMSLRNEVSWNTI------------ITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFI 50
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
GVLAAC+ VG+
Sbjct: 51 GVLAACSH------------------------VGLV------------------------ 62
Query: 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-- 384
EG YF+ M Y + P + Y C+VD+L RAGQ D F+ +MP +
Sbjct: 63 -----EEGLSYFKSMSNVYGLNPTPDHYACVVDILGRAGQLDRARRFVDEMPITADAMVW 117
Query: 385 ----EPC----NPDIAEHAARHLFELEPLSSGK--------------------------- 409
C N +I E AA+HL ELEP S
Sbjct: 118 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 177
Query: 410 ----------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP------ 447
VH+F GD H L +I + L L + KIGY + P
Sbjct: 178 GIRKEPGRSWIEAKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLAKIGYKQEKPNLFHEK 237
Query: 448 --------ACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERER 499
A HSEKLA+AFGL++ P PLRVIKNLR+C DCHS K+ S+ + R
Sbjct: 238 EQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTR----R 293
Query: 500 EIIMIDNYRFHHFVDGACSCGDYW 523
EI++ D YRFHHF G+CSCGDYW
Sbjct: 294 EIVLRDVYRFHHFNSGSCSCGDYW 317
>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 139/539 (25%), Positives = 217/539 (40%), Gaps = 188/539 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++MPERN WT M+ Y G+ E +LL+DE V + R+G +
Sbjct: 210 VFDEMPERNEVGWTIMIAGYVGNGFSRE----GFLLLDEMVLR-------FRLGLN---- 254
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
+++ +AC + + M G+ +H + LK
Sbjct: 255 FVTLSSILSACAQSGDVLM---------------------------GRWVHVYALKGMGR 287
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
E ++V +L+D YAKC + +A F + ++++V+WNAML G A+ +
Sbjct: 288 EMHIMVGTALVDMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAM------------H 335
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G G+ L+ F +MI+ + +P+ ++ VL+AC+
Sbjct: 336 GRGKFVLDIFPKMIE-EAKPDDLTFMAVLSACSH-------------------------- 368
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360
+ L+D +G+ YF ++ EY P +E Y CMVD+
Sbjct: 369 ----------------SGLVD-----------QGYHYFRSLESEYGTTPKIEHYACMVDI 401
Query: 361 LARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSS--- 407
L RAG ++ + +KKMP P+ CN + E + L +++ ++
Sbjct: 402 LGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYH 461
Query: 408 ----------------------------------------GKVHSFIAGDTSHSLVHKIS 427
G +H F AGD SH L +I
Sbjct: 462 VLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIY 521
Query: 428 EKLMRLYSEIKKIGYM-----KRIPACG------------------HSEKLALAFGLIST 464
L + ++ GY+ + P HSEKLA+ FG IST
Sbjct: 522 HALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHIST 581
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
PG+PL + KNLR+C DCHS K VSK REI++ D RFH F G+CSC DYW
Sbjct: 582 KPGAPLYIFKNLRICQDCHSAIKIVSKI----YNREIVIRDRNRFHCFKHGSCSCSDYW 636
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 76/406 (18%), Positives = 156/406 (38%), Gaps = 80/406 (19%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV 70
+++ T + + + C + ++L G ++HA ++ G+ N
Sbjct: 4 STINFTTLQSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGL----------ASSSPNT 53
Query: 71 FSWTSMMGMYNVLGYYEEIVNLFYLL------IDEGVYKACSELKDHRVGKDVYDYMISI 124
F ++ +Y G +LFY + + + S ++ + + + +
Sbjct: 54 FLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEM 113
Query: 125 KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184
+ EG ++ +F+ C R+E +L + + + L K L +
Sbjct: 114 RKEGVVLDDVAMISVFVLCTRVE------------DLGMGRQAQGC----LVKMGLGLGV 157
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG---------------- 228
V N++M+ Y KC ++ F ++ ++++VSW+ +L G
Sbjct: 158 KVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPER 217
Query: 229 ---GFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
G+ I G+ G M+ + + N ++LS +L+ACAQ +G+ +
Sbjct: 218 NEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWV 277
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
H Y L+ G+G + + G +L+DMY +CG I + ++ F+ + K
Sbjct: 278 HVYALK-------GMGREMHIMVG--------TALVDMYAKCGPI--DMAFKVFKYLPKR 320
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPD 390
+ + M+ LA G+ L+ KM E PD
Sbjct: 321 -----NVVAWNAMLGGLAMHGRGKFVLDIFPKM------IEEAKPD 355
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 147/597 (24%), Positives = 249/597 (41%), Gaps = 180/597 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----------------LCAFLG 60
PD +T+ + + ++ + +G Q H+ ++ G + L A G
Sbjct: 117 PD--NITFPFLIKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAG 174
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F +MP R+V SWTSM+ Y G E+ E+ D ++++
Sbjct: 175 RIFGQMPFRDVVSWTSMVAGYCKCGMVED----------------AREMFDEMPHRNLFT 218
Query: 120 YMISIK-FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHH 174
+ I I + N C ++ + D+F R + + E ++L L+ G+ H +
Sbjct: 219 WSIMINGYAKNNCFEKAI-DLFELMKREGVVANETVMVSVISSCAHLGALEFGERAH-EY 276
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+ K + +L++ +L+D Y +C ++ A F ++ K +SW++++ G A+
Sbjct: 277 VVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAV------- 329
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+G A+ +FS+M++ P I+L+ VL+AC+ HG
Sbjct: 330 -----HGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACS-----------HG-------- 365
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
L+D +G +E MK++Y +EP +E Y
Sbjct: 366 -----------------------GLVD-----------KGLEIYENMKRDYGIEPRLEHY 391
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
C+VD+L RAG+ + NF+ KMP +P++ C N ++AE L E++P
Sbjct: 392 GCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKP 451
Query: 405 LSSG-------------------------------------------KVHSFIAGD-TSH 420
SG K++ F GD H
Sbjct: 452 EHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKH 511
Query: 421 SLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSP 466
+ KI + +I+ IGY K HSEKLA+A+G++ T
Sbjct: 512 PEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKT 571
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +R++KNLR+C DCH+ TK +S+ RE I+ D RFHHF +G CSC DYW
Sbjct: 572 GTTIRIVKNLRVCEDCHTATKLISEVYG----REFIVRDRNRFHHFRNGLCSCRDYW 624
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 158/604 (26%), Positives = 239/604 (39%), Gaps = 188/604 (31%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHL--------------IVCGVELCAFL-- 59
+PD + YAL RC + Q+H H ++ +C L
Sbjct: 71 ADPD--PIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIHAYSVCGMLFD 128
Query: 60 --GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDV 117
+F+ PE ++ +W ++ GY + D G + E +D
Sbjct: 129 ARKVFDHGPEVDMIAWNCLL-----RGYAQGR--------DTGALR---EFFAQMPARDS 172
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL---------LKHGK 168
+ I + CV + + R +AS E + + +S+ L G
Sbjct: 173 VSWNTVIAW----CVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGL 228
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF-SKIKQKHLVSWNAMLAGYAL 227
H + +K+ +E D ++++L++ Y+KC +++ A F + + + +WNAMLAG
Sbjct: 229 WAHAYVCRKE-IEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAG--- 284
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
FT G E ALE F+RM + PN I+ + +L AC+
Sbjct: 285 ---------FTASGCSERALELFTRMESSGFVPNKITFNTLLNACSH------------- 322
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
G FV EG YFE M ++
Sbjct: 323 ------------------------GGFV----------------EEGIGYFERMTNSSSI 342
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAAR 397
EP + Y CMVDL RAG F+ ++ MP EP +A C N ++ + A
Sbjct: 343 EPDIAHYGCMVDLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGH 402
Query: 398 HLFELEP--------LSS-----------------------------------GKVHSFI 414
L E P LS+ G +H FI
Sbjct: 403 RLIEAAPNDHAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFI 462
Query: 415 AGDTSHSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAF 459
+GD SHS + E L + ++K GY +K HSE+LALAF
Sbjct: 463 SGDKSHSRKRDVYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAF 522
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLIST+PG+P+R++KNLR+CGDCH+ K +SK R I++ D RFH F +G+CSC
Sbjct: 523 GLISTAPGTPIRIVKNLRVCGDCHNAIKLLSKIYG----RCIMVRDANRFHRFREGSCSC 578
Query: 520 GDYW 523
GDYW
Sbjct: 579 GDYW 582
>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Cucumis sativus]
Length = 720
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 135/489 (27%), Positives = 207/489 (42%), Gaps = 141/489 (28%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK--FSKIKQKHL 215
F+N+ L G + H L K + V + L+D Y+KC + C+ F +I L
Sbjct: 250 FTNVQDLLGGLQFHAK-LIKSGYHQNSHVGSGLIDLYSKCGGCML-DCRKVFDEISNPDL 307
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGD-GETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
V WN M++GY+L Y D + ALE F ++ +P+ SL V++AC+
Sbjct: 308 VLWNTMISGYSL------------YEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSN 355
Query: 275 VKGFKLGKEIHGYVLR-----------------------------------HHIQLSTGV 299
+ G+++HG L+ H +S
Sbjct: 356 MSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNS 415
Query: 300 GIALISIQGLGTGSF-------------VWNSLIDMYGRCGAIQKNE-GWRYFEMMKKEY 345
IA + G+G S + I + C + E G YF MMK+++
Sbjct: 416 MIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKF 475
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHA 395
+EP + CM+DLL RAG+ + ++ +PF+P + C N ++A A
Sbjct: 476 GIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKA 535
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
A L +L+PL++ ++H
Sbjct: 536 ANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHI 595
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------------------GHSEK 454
F+A DT H ++ KI E L + +IKK+GY + + HSEK
Sbjct: 596 FVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEK 655
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
LA++FGL+ST G P+ V KNLR+C DCH+ KY+S+ K REI + D++RFH F D
Sbjct: 656 LAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVK----REITVRDSHRFHCFKD 711
Query: 515 GACSCGDYW 523
G CSCG YW
Sbjct: 712 GQCSCGGYW 720
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 55/242 (22%)
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
K C +D R GK ++ I + + L ++ KC R+ A F+
Sbjct: 16 KTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFD-------- 67
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
H H + ++ N+L+ YAK Y++VAH F ++ Q VS+N ++
Sbjct: 68 --------HTH-------DCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLI 112
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
A YA + GD + A + F M + + + +LSG++ AC G L +
Sbjct: 113 AAYA------------RRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVG--LIR 158
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H AL + GL + V N+LI Y + G ++ E R F +
Sbjct: 159 QLH----------------ALSVVTGLDSYVSVGNALITSYSKNGFLK--EARRIFHWLS 200
Query: 343 KE 344
++
Sbjct: 201 ED 202
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 159/649 (24%), Positives = 256/649 (39%), Gaps = 195/649 (30%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCG--------VELCAFLGM------------FEKMPER 68
RC +L+ Q+HAH I G EL FL + F ++
Sbjct: 22 ISRCKTTRHLK---QIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHP 78
Query: 69 NVFSWTSMM-----GMYNVLGYYEEIVNLFYL--LIDEG-----------VYKACSELKD 110
N FSW +++ + L + + L Y ++ +G V KAC++L
Sbjct: 79 NCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLAR 138
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
GK ++ +++ + + V+ ++ +++ CG M+ A F +
Sbjct: 139 IEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTR------------- 185
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
LE ++++ N ++D Y + L+ + F + K +VSWN M++G A
Sbjct: 186 ---------LEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCA---- 232
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
Q G + A+E F M D+ PN ++L VL A +++ +LGK +H + +
Sbjct: 233 --------QNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEK 284
Query: 291 HHIQLSTGVGIALISI--------------QGLGT--GSFVWNSLID---MYGRC----- 326
+ I++ +G ALI + +G+ W+++I M+GR
Sbjct: 285 NEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALD 344
Query: 327 ------------------GAIQK-------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G + EG + M + P +E Y CMVDLL
Sbjct: 345 HFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLL 404
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG ++ + MP +P C N ++ E A+ L P SG
Sbjct: 405 GRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYV 464
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F+ D SH I
Sbjct: 465 ALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHS 524
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
L + ++ +GY K+ HSEK+A+AFGLIST P +PL+++K
Sbjct: 525 MLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVK 584
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCHS K VSK R+II+ D RFHHF +G+CSC DYW
Sbjct: 585 NLRVCEDCHSSIKLVSKI----YNRKIIVRDRKRFHHFENGSCSCMDYW 629
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 131/476 (27%), Positives = 190/476 (39%), Gaps = 142/476 (29%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--------------- 229
V NSL+ Y C + A F ++ +K ++SW +++ Y G
Sbjct: 178 FVENSLIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVK 237
Query: 230 ----FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ +TG+ Q ALE F RM + M + +SL+G ++ACAQ+ + +
Sbjct: 238 DMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQ 297
Query: 286 GYVLRHHIQLSTGVGIALIS-----------------------------IQGL---GTGS 313
R + VG L+ I GL G S
Sbjct: 298 EIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRAS 357
Query: 314 FVWNSLIDMYGRCGAIQKN------------------EGWRYFEMMKKEYNMEPAMEQYC 355
+M R ++ N EG YF MK +Y + P+ + Y
Sbjct: 358 EAIALFKEMVNRAN-VEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYA 416
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPL 405
CMVDLL RAG D+ L+ ++ M P C +IA+ A HLF+LEP
Sbjct: 417 CMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPE 476
Query: 406 SSGK--------------------------------------------VHSFIAGDTSHS 421
S G VH F AGD +H
Sbjct: 477 SIGNYVLLSNILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHP 536
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
H+I + L+ L +++K GY+ + + GHSEKLAL+FGL++ G
Sbjct: 537 RTHEIKKALLELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSG 596
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+R+IKNLR+C DCH + VS+ E EII+ DN RFHHF +G CSCG +W
Sbjct: 597 CTIRIIKNLRICDDCHLFMQLVSRVE----SVEIIVRDNMRFHHFKNGECSCGGFW 648
>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Glycine max]
Length = 622
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 151/587 (25%), Positives = 243/587 (41%), Gaps = 169/587 (28%)
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143
G +E + L+ L+ K C++L + GK V+ +M + KF+ + ++ VL M+ +C
Sbjct: 58 GSFELDLTLYNTLL-----KRCTQLGKLKEGKLVHFHMFNSKFKDDLVIQNFVLFMYARC 112
Query: 144 GRMEMASGEFEEKDFSNL------------------------SLLKHGKEIHPHHLKK-- 177
G ++ F EK ++ +L G +++ L
Sbjct: 113 GNLKDTQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLNXFILSSLI 172
Query: 178 ------DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
S++ V +SL++ A+C YL F K+ VSWNA++ GYA
Sbjct: 173 HASCWMYGCHSNVFVGSSLVNMXARCGYLGEEXLVFDNSWCKNEVSWNALIGGYA----- 227
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
+ G+GE AL + RM +P + SG+L++ + + GK + ++++
Sbjct: 228 -------KKGEGEEALALYLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLAHLMKP 280
Query: 292 HIQLSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCG----AIQK- 331
+L VG L+ + + NS++ Y + G A+Q+
Sbjct: 281 GQKLVVYVGNTLLHMYAKLGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKEAMQQF 340
Query: 332 ----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+EG YF +M+K Y++EP + Y ++DLL
Sbjct: 341 EEMISFGIEPNDITVLFVLSSCSHARLLDEGKHYFGLMRK-YSIEPKVSHYATIIDLLGX 399
Query: 364 AGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP--------- 404
AG D +F+++MP EP S N + +AA+ +FEL P
Sbjct: 400 AGLLDQAESFIEEMPIEPIVAIXGALLGDSKMHKNTKMGAYAAQQVFELNPSCRGTHTLL 459
Query: 405 ----LSSGK------------------------------VHSFIAGDTSHSLVHKISEKL 430
S+G+ VH F+A D +H KI +
Sbjct: 460 VNMYASAGRWGDVAKVIKIMKDSGVKKEPTCSXVEIENSVHVFVANDAAHPQKEKIHKMW 519
Query: 431 MRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNL 476
+L +IK+IGY+ K + H+EKLAL ++T P S R++KN+
Sbjct: 520 EKLNQKIKEIGYVPDTSHVLLFVDQQEKELNFQYHTEKLALTLAFLNTPPRSTTRIMKNI 579
Query: 477 RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R+ GDCHS YV+ K REII+ D RFHHF DG CSCGDYW
Sbjct: 580 RVSGDCHSSINYVALVVK----REIIVRDTNRFHHFRDGFCSCGDYW 622
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 53/234 (22%)
Query: 101 VYKACSELKDHRVGKDVYDYMIS----IKFEGNACVKRPVLDMFIKCGRMEMASGEFEE- 155
++++ S ++ D+ Y+I ++ N+ + VLD+ I CG E+ +
Sbjct: 12 LWQSLSTIQSTFCDSDISAYVIDNKNLLRPSLNSKIGLHVLDL-IDCGSFELDLTLYNTL 70
Query: 156 -KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214
K + L LK GK +H H+ + DL++ N ++ YA+C LK F++ QK
Sbjct: 71 LKRCTQLGKLKEGKLVH-FHMFNSKFKDDLVIQNFVLFMYARCGNLKDTQHVFNEKLQKD 129
Query: 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL-AACA 273
+V+W +M++GYA Q + L F R++ + N LS ++ A+C
Sbjct: 130 MVTWTSMISGYA------------QNERAKDTLVLFPRILSEGTKLNXFILSSLIHASCW 177
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ G + FV +SL++M RCG
Sbjct: 178 --------------------------------MYGCHSNVFVGSSLVNMXARCG 199
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 144/539 (26%), Positives = 230/539 (42%), Gaps = 146/539 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+F++MPERN SW M+ Y + Y E ++F + + C L D
Sbjct: 185 LFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDD 244
Query: 111 -----HRVGKDV----YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF-EEKDFS- 159
RV + + MI+ + R L++ I+ R SG + F+
Sbjct: 245 AIQLYERVPEQTNSASWAAMIAGFVQNEE--SREALELLIELHR----SGSVPSDSSFTS 298
Query: 160 ------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-- 211
N+ ++ G+ IH +K + + V N L+ YAKC ++ F I+
Sbjct: 299 ALSACANIGDVEIGRVIHSLAIKTG-CQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMP 357
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ +VSW A+++ Y Q G GE AL+ F M+ ++PN ++++ +L+A
Sbjct: 358 KRDVVSWTAIISAY------------VQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 405
Query: 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSFV-----------WN 317
C + KLG++ H + + VG +LI++ G G V WN
Sbjct: 406 CGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFCVFEEMPEHDLITWN 465
Query: 318 SLIDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKKE 344
+++ + G AI+ +EGW +F M ++
Sbjct: 466 AVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQK 525
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEP 404
Y + P + Y CMVDLL RAG + ++ MP +P S
Sbjct: 526 YGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSV-------------------- 565
Query: 405 LSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLIST 464
+ + G +H+ +E L HSEKLA+ FG++ST
Sbjct: 566 -----IWEALLGACR---IHRNNELLY-------------------HSEKLAVVFGILST 598
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
GSP+++IKNLR+CGDCH+ K++SK R+II+ D RFHHF DG+CSCGDYW
Sbjct: 599 PNGSPIQIIKNLRICGDCHTFMKFMSKVTL----RKIIIRDGNRFHHFRDGSCSCGDYW 653
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 141/385 (36%), Gaps = 108/385 (28%)
Query: 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80
C T +L Q P+ + + ++ + VE +F +M +R+V SW SM+ Y
Sbjct: 23 CISTLSLPIQETPQTHLFQCNTRIQELGRLGRVEEAR--RVFNEMIQRDVVSWNSMINGY 80
Query: 81 NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140
+ G +E LF D VGK++ + I +L +
Sbjct: 81 SQNGKVDEARLLF----------------DAFVGKNIRTWTI-------------LLTGY 111
Query: 141 IKCGRMEMASGEFEEKDFSNL--------SLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192
K GR+E A FE N+ +++G + L + E ++ NS++
Sbjct: 112 AKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVT 171
Query: 193 FYAKCRYLKVAHCKFSKIKQKHLVSW--------------------------------NA 220
Y C + A F ++ +++ VSW
Sbjct: 172 GYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSWTT 231
Query: 221 MLAGYALGGFREE--------------------ITGFTQYGDGETALEFFSRMIQTDMQP 260
M+A +A G ++ I GF Q + ALE + ++ P
Sbjct: 232 MIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGSVP 291
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ S + L+ACA + ++G+ IH ++ Q + S+V N LI
Sbjct: 292 SDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN----------------SYVMNGLI 335
Query: 321 DMYGRCGAIQK-NEGWRYFEMMKKE 344
MY +CG ++ + +R M K++
Sbjct: 336 SMYAKCGNVEDGSHVFRTIRMPKRD 360
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 82/203 (40%), Gaps = 30/203 (14%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETAL 247
F+++ Q+ +VSWN+M+ GY+ G +E +TG+ + G E A
Sbjct: 62 FNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAR 121
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E F M + N +S + +++ Q K +++ + ++ V
Sbjct: 122 EVFESMTER----NVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCY 177
Query: 308 GLGTGSFVW------NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
+ ++ NS+ M G + ++ W +++ K + M+
Sbjct: 178 RMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEY-SWTTMIAAF 236
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA 384
A+ G+ DD + +++P + +SA
Sbjct: 237 AQCGRLDDAIQLYERVPEQTNSA 259
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 213/511 (41%), Gaps = 142/511 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+ MPERN+ SW +M+ Y G + + + +V+D
Sbjct: 183 LFDGMPERNLISWNAMISGYVKAGRFLDAL-------------------------EVFDQ 217
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
M ++ EGN V + + C + +L G+E+H +++ +
Sbjct: 218 MRALGIEGNGFVAASAV---VAC---------------TGAGVLARGREVH-RWVEQSGI 258
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D + +++D Y KC ++ A F + K L SWN M+ G A+ +
Sbjct: 259 TMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAV------------H 306
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
G + A+E F M + D+ P+ ++L VL ACA G Y+++ +
Sbjct: 307 GRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRY-------- 358
Query: 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE--------------------------- 333
G+ + ++D++GR G + + +
Sbjct: 359 -------GIEPKMEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRD 411
Query: 334 -------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP 386
GWR E+ + +Y + +LLA AGQ+ D + M
Sbjct: 412 LDLGEAIGWRVIELDPQNSG------RYVLLANLLASAGQWVDVAKVRRLMD-------- 457
Query: 387 CNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
++++ A R + E++ G+V F G H+ +I + + +I+ GYM
Sbjct: 458 -ERNVSKEAGRSVIEID----GEVCEFQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDT 512
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K +P HSEKLA+AFGL+ T PG +R+ KNLR+C DCH TK++S
Sbjct: 513 SDVLHDITEEEKEVPLQYHSEKLAIAFGLLRTRPGDTVRITKNLRVCRDCHEATKFIS-- 570
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
R EREI++ D RFHHF DG CSC DYW
Sbjct: 571 --RVFEREIVVRDRNRFHHFKDGTCSCRDYW 599
>gi|302824721|ref|XP_002994001.1| hypothetical protein SELMODRAFT_138033 [Selaginella moellendorffii]
gi|300138163|gb|EFJ04941.1| hypothetical protein SELMODRAFT_138033 [Selaginella moellendorffii]
Length = 948
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 164/658 (24%), Positives = 263/658 (39%), Gaps = 201/658 (30%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA--------HLIVCGVELC 56
+V +L+ M+ VT+ I C L LE G ++ A L
Sbjct: 353 SVMQILERMEAEGVKPNEVTFITILDTCKNLA-LEDGKKIQALASEQQQRSLDASARIGT 411
Query: 57 AFLGMF-------------EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103
A +GMF +K+ +++V ++T+M+ Y E + +F
Sbjct: 412 AVIGMFSRFSSMILAREAFDKISQKSVAAYTAMIAGYANNKQPREALAIF---------- 461
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
E+ RV D ++I +AC P L+
Sbjct: 462 --QEMIRRRVAADNLVLAVAI----SACASIPDLE------------------------- 490
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
GK +H + L D +V +L+D Y++C ++ A F +I++ V+W+AM+A
Sbjct: 491 --EGKALHCSAMDLG-LHRDDVVRTALVDMYSRCGSMEDASAVFGEIERPDTVAWSAMIA 547
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK------- 276
ALG ++GD A+ +RM Q +P+ ++ GVLAACA
Sbjct: 548 --ALG----------RHGDPRGAVAMAARMQQDGWRPSGATMVGVLAACAHAGMIEEAAR 595
Query: 277 ---------GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRC 326
GF E+ V+R + ++ + + A + + W ++++ Y R
Sbjct: 596 KVHSLLVDGGFDSDPEVKFAVMRMYAKVGS-IQEACNAFDKIENPDVKAWTTMLEAYCRL 654
Query: 327 GA-------------IQKN-----------------------EGWRYFEMMKKEYNMEPA 350
G +Q++ E RYF+ MK +Y + P
Sbjct: 655 GKYNASDRALKLARMMQQDGVMPDKVTFVDILTACAYGGHLQEAGRYFKDMKFDYGLVPE 714
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFE--------------PSSAEPCNPDIAEHAA 396
ME Y +VD +AR G + + ++ +P + + P + E
Sbjct: 715 MEHYVALVDTVARKGYLQEAEDLIRMVPLQVNEIIWFALLECCKSQNDAPRTQRVGEIIM 774
Query: 397 RHLFELEPLSSG------------------------------------KVHSFIAGDTSH 420
+ +L+PL +G VH F+AGD SH
Sbjct: 775 KINNKLDPLGTGAHRVAARWEEAKRVRKLMTDRGIKKEPGKSMISIKNTVHGFVAGDRSH 834
Query: 421 SLVHKISEKLMRLYSEIKKIGY-------MKRIPACG-------HSEKLALAFGLISTSP 466
+I ++ R+ + IKK GY + +P HSE+LA+A+G ++T P
Sbjct: 835 PHTREIYAEVDRITALIKKDGYIPDTRYVLHDVPEDKKERLLWYHSERLAMAYGHMNTPP 894
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV-DGACSCGDYW 523
G PLRVIKNLR+CGDCH+ +K +K +REII+ DN RFHHF DG CSCGDYW
Sbjct: 895 GQPLRVIKNLRVCGDCHTASKLYAKV----MQREIIVRDNRRFHHFAKDGTCSCGDYW 948
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/379 (21%), Positives = 143/379 (37%), Gaps = 101/379 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+Y + Q C +L + G +VH H+ +E F+G +F+ +
Sbjct: 65 SYQHVLQLCTRLRAMAEGARVHDHIRRSRMEAERFVGNDLVFMYAAFGNPGEARRIFDGL 124
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
NV S+T++M Y G +E + + +L + LK + M+++
Sbjct: 125 GSHNVLSFTAIMRAYVTAGDPDEALKILHL----------ARLKAFKADPS----MLAMA 170
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
E A +KR +LSL G+ H +++ + D
Sbjct: 171 VEA-AGMKR-------------------------DLSL---GRFFH-DTIRRCGYDLDAG 200
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKI----KQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
V SL+ Y+ C ++ A F + +VSW +LA ++
Sbjct: 201 VAISLIGMYSNCGEIEAAVQAFDRAFLRAPSSDVVSWTKILAA------------CNEHR 248
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
D AL+ F RM + + P+ I VL + + GK IH VL ++ + VG
Sbjct: 249 DYIGALDLFDRMREQGVVPDRICFVTVLDSVIGLGDIAQGKRIHSMVLDRELERDSMVGT 308
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
A++ MY R G+IQ + R F+ + +P + + +V
Sbjct: 309 AVVK----------------MYARIGSIQ--DACRAFDRID-----QPGVAAWTVLVGAY 345
Query: 362 ARAGQFDDTLNFMKKMPFE 380
R G F+ + +++M E
Sbjct: 346 CRLGSFNSVMQILERMEAE 364
>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 740
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 130/485 (26%), Positives = 204/485 (42%), Gaps = 126/485 (25%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
SN S +G +H H LK D V SL++FYAK + V+ F +I + L +W
Sbjct: 262 SNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKYGKMCVSRYIFDRINEPDLATW 321
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALE---FFSRMIQTDMQPNTISLSGVLAACAQV 275
N +L YA + + D + +LE F M ++PN +++ +++AC+ +
Sbjct: 322 NVILNAYARSSSYHSYS--NSFDDADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNL 379
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALI------------------------------- 304
G +H +VLR+ I+++ VG A +
Sbjct: 380 GAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTA 439
Query: 305 -----SIQGLGTGSF-----------VWNS---LIDMYGRCGAIQKNEGWRYFEMMKKEY 345
++ G G + V +S ++ M+ EG F+ MK+ +
Sbjct: 440 MIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVH 499
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHA 395
+EP +E Y C++DLL RAG+ + ++ MP +P++ N + E A
Sbjct: 500 GVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHGNLGVGEVA 559
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
L ELEP +SG +H
Sbjct: 560 LTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHE 619
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALA 458
F+ GD SH +I K+ + S +++ G+ R HSE+LA+A
Sbjct: 620 FLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLSYHSERLAIA 679
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F LI++ +R+IKNLR+CGDCH+ TK +S A REII+ D RFHHF DG+CS
Sbjct: 680 FALIASPSSLAIRIIKNLRVCGDCHAFTKLISVA----YHREIIVRDRNRFHHFKDGSCS 735
Query: 519 CGDYW 523
C DYW
Sbjct: 736 CLDYW 740
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 157/631 (24%), Positives = 245/631 (38%), Gaps = 201/631 (31%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHLIVCGVE-------LCAFLG---------------MFE 63
AL+ ++C + L Q+HA L+ + LC +G +F
Sbjct: 61 ALLIRKCRSMRVLR---QIHARLLTHAMPISSISFGLCKIIGFCALSPYGDIDYARKLFS 117
Query: 64 KMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122
++ N+FSW SM+ G +E V LF ++ G
Sbjct: 118 QIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGY--------------------- 156
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
P + F + F K S +S L+ G+++H + LK S
Sbjct: 157 ------------PNPNTF---------TMAFVLKACSIVSALEEGQQVHANVLK-SGFGS 194
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
V +L++FYAKC + +A F +I ++LV+W+ M++GYA G E
Sbjct: 195 SPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNE--------- 245
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL F M + + P+ +++ V++ACA GK +H Y+ + I+ + A
Sbjct: 246 ---ALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 302
Query: 303 LIS-----------------------------IQGLGTGSFVWNSLIDMYGRCGAIQK-- 331
L++ I GL ++L + + A K
Sbjct: 303 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 362
Query: 332 -----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
+EG RY+ M E+ + P+ME Y CMVDLL RA +D +
Sbjct: 363 HVTFIGVLSACAHSGLVSEGRRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLV 421
Query: 375 KKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSS----------------- 407
+ MP P+ + N D +E A+ L ELEP ++
Sbjct: 422 ETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWE 481
Query: 408 --------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
G VH F+ GD SH ++ E L + + +G
Sbjct: 482 KMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVG 541
Query: 442 YMKRI--------------PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ I C HSE+LA+A+GL+ T +R++KNLR+CGDCH TK
Sbjct: 542 HQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTK 601
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACS 518
+S E REII+ D RFH FV+G+CS
Sbjct: 602 IISA----EYRREIIVRDRVRFHKFVNGSCS 628
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 147/598 (24%), Positives = 242/598 (40%), Gaps = 182/598 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE------------------LCAFL 59
PD +T+ + + C +L N +G+Q H I G E + A
Sbjct: 115 PD--NITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAAR 172
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
+F++M +V SWT M+ Y+ G K+ EL D +++
Sbjct: 173 SVFQRMCRFDVVSWTCMIAGYHRC----------------GDAKSARELFDRMPERNLVT 216
Query: 120 YMISIK-FEGNACVKRPVLDMFIKCGRMEMASGEFEE----KDFSNLSLLKHGKEIHPHH 174
+ I + N C ++ V + F + + E ++L L G++ H +
Sbjct: 217 WSTMISGYARNNCFEKAV-ETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAH-EY 274
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
+ ++ L +L++ +++D YA+C ++ A F ++ +K ++ W A++AG A+
Sbjct: 275 VMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAM------- 327
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
+G E AL +FS M + P I+ + VL AC+
Sbjct: 328 -----HGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHA------------------- 363
Query: 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354
G +++ G FE MK+++ +EP +E Y
Sbjct: 364 --------------------------------GMVER--GLEIFESMKRDHGVEPRLEHY 389
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL RAG+ F+ KMP +P++ C N ++ E + L E++P
Sbjct: 390 GCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQP 449
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
SG KVH F GD +H
Sbjct: 450 EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHP 509
Query: 422 LVHKISEKLMR--LYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTS 465
+ KI E++ + +IK GY+ HSEKLA+A+G++
Sbjct: 510 EIEKI-ERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIR 568
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+P+R++KNLR+C DCH+ TK +SK E E+I+ D RFHHF +G CSC DYW
Sbjct: 569 APTPIRIVKNLRVCEDCHTATKLISKV----FEVELIVRDRNRFHHFKEGTCSCMDYW 622
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 38/213 (17%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFY--AKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K IH H L+ L D+ + L+ F + L A S+I+ +L +NA+
Sbjct: 34 KIIHAHMLRTH-LFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNAL---- 88
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I G + + E + ++ + ++ + P+ I+ ++ ACAQ++ +G + H
Sbjct: 89 --------IRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTH 140
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345
G ++H G +V NSL+ MY G I N F+ M +
Sbjct: 141 GQAIKH----------------GFEQDFYVQNSLVHMYASVGDI--NAARSVFQRMCRF- 181
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
+ + CM+ R G +MP
Sbjct: 182 ----DVVSWTCMIAGYHRCGDAKSARELFDRMP 210
>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 755
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 172/673 (25%), Positives = 270/673 (40%), Gaps = 216/673 (32%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFL 59
P++ T++ L + C + NN++ G +HA ++ GV E
Sbjct: 132 PNQYTLSSVL--KCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAE 189
Query: 60 GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
FE M E++V SW M+G Y + EG + E+ + KDV
Sbjct: 190 SFFELMIEKDVVSWNIMIGAY----------------LREGDVEKSLEMFRNFPNKDVVS 233
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMA----------SGEFEEKDFS-------NLS 162
+ ++D I+CG +A EF FS +LS
Sbjct: 234 W-------------NTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLS 280
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----------- 211
L++ G+++H L L SD + +SL++ Y KC + A +
Sbjct: 281 LVEVGRQLHGRVLTFG-LNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGV 339
Query: 212 -----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
+ +VSW++M++GY G +Y DG ++ F M+ + + +++
Sbjct: 340 TCKEPKARMVSWSSMVSGYVWNG---------KYEDG---MKTFRSMVCELIVVDIRTVA 387
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF------------ 314
+++ACA + GK+IH Y+ + +++ VG +LI + +GS
Sbjct: 388 TIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYS-KSGSLDDALMIFEQIKE 446
Query: 315 ----VWNSLID---MYGR-------------CGAIQKN-----------------EGWRY 337
+W S+I ++G+ G I EG RY
Sbjct: 447 PNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRY 506
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM----------------------K 375
F MMK Y++ P +E Y MV+L RAG + NF+ K
Sbjct: 507 FRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHK 566
Query: 376 KMPFEPSSAE------PCNPDIA-------------EHAA--RHLF-----ELEPLSS-- 407
S +E P +PD + AA R L + +P S
Sbjct: 567 NFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWV 626
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACG 450
++HSF GD SH +I L L +K+IGY +
Sbjct: 627 QLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISH 686
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLAL F +I+TSP +P+R++KNLR+C DCH+ KY S+ EREII+ D +RFH
Sbjct: 687 HSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQL----LEREIIVRDTHRFH 742
Query: 511 HFVDGACSCGDYW 523
HF +CSCG+YW
Sbjct: 743 HFKQSSCSCGEYW 755
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 35/211 (16%)
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
+ +H H+ KK L+ L N L+ Y K L AH F +I K+ +W +++G+A
Sbjct: 52 RALHGHYFKKGSLQI-LNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFAR 110
Query: 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287
G E F M PN +LS VL C++ + GK IH +
Sbjct: 111 AA-----------GSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAW 159
Query: 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347
+LR+ G+G + NS++D+Y +C + E +FE+M +
Sbjct: 160 ILRN----------------GVGGDVVLENSILDLYLKCKEFEYAES--FFELM-----I 196
Query: 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378
E + + M+ R G + +L + P
Sbjct: 197 EKDVVSWNIMIGAYLREGDVEKSLEMFRNFP 227
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 151/568 (26%), Positives = 228/568 (40%), Gaps = 167/568 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83
T+ + C +L++LE G +VH+H+I G E ++F +++ +Y+V
Sbjct: 37 TFPFLLNSCARLSSLEPGHEVHSHIIKHGFE-------------SDLFVRNALIHLYSVF 83
Query: 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP--VLDMFI 141
G +NL L DE + + D+ Y IK G A V +P L +F
Sbjct: 84 GN----LNLARTLFDESLVR------------DLVSYNTMIK--GYAEVNQPESALCLFG 125
Query: 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
+ + + + L GK ++ +++ + ++ ++MD YAKC +
Sbjct: 126 EMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSID 185
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN 261
A F ++ + M G+ F I G Q+G GETA+ F +I T ++P+
Sbjct: 186 SALEIFRRVGKN-------MKTGFV---FNSMIAGLAQHGLGETAITVFRELISTGLKPD 235
Query: 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321
++ GVL AC
Sbjct: 236 EVTFVGVLCAC------------------------------------------------- 246
Query: 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381
G G I+ EG + FE M Y ++P ME Y CMVDLL R G ++ + ++KMPFE
Sbjct: 247 --GHSGLIE--EGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEA 302
Query: 382 SSA------EPC----NPDIAEHAARHLFELEP--------LSS---------------- 407
+S C N I E A + L E+E LS+
Sbjct: 303 NSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRK 362
Query: 408 -------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM----- 443
G +H F+A D SH +I L + +K GY+
Sbjct: 363 VMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQ 422
Query: 444 ---------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEK 494
K HSEKLALAFGL+ SP +R++KNLR+C DCH K VS+
Sbjct: 423 VMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYG 482
Query: 495 REREREIIMIDNYRFHHFVDGACSCGDY 522
REI + D RFHHF +G+CSC D+
Sbjct: 483 ----REITVRDTMRFHHFRNGSCSCMDF 506
>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g52630-like [Brachypodium distachyon]
Length = 595
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 127/473 (26%), Positives = 201/473 (42%), Gaps = 136/473 (28%)
Query: 170 IHPHHL----KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
+ PH L K D+ V ++++D YAKC L A F ++ ++++VSW+A++ GY
Sbjct: 140 LAPHALHGLASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGY 199
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
A G AL F ++ ++ N ++S ++ CA F LG ++H
Sbjct: 200 ADAGMHP------------AALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLGAQVH 247
Query: 286 GYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGRCG--- 327
++ + S VG +L+S+ GL ++ +WN++++ + G
Sbjct: 248 ARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRIFSAAPERNLGIWNAVLNASAQHGHTA 307
Query: 328 -AIQK-----------------------------NEGWRYFEMMKKEYNMEPAMEQYCCM 357
A ++ +EG RYF +MK EY +EP E Y M
Sbjct: 308 TAFERFMEMQNDGFRPNYITFLCLLTACSHAGLVDEGKRYFSLMK-EYTIEPQAEHYAAM 366
Query: 358 VDLLARAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSS 407
VDLL R G+ + L ++ MP EP + C + D A AA+ LF+ SS
Sbjct: 367 VDLLGRVGRITEALELIESMPMEPPESVWGALLMACRMFKDADTAAIAAKRLFQTGSRSS 426
Query: 408 G-------------------------------------------KVHSFIAGDTSHSLVH 424
G +VH+F++ H
Sbjct: 427 GAHMLLSSTYAAAGRHVDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSD 486
Query: 425 KISEKLMRLYSEIKKIGYMKRIPACG--------------HSEKLALAFGLISTSPGSPL 470
+I L ++ +++ GY+ A HSE+LA+ GL+ G P+
Sbjct: 487 EIYNVLEKVGEKMEGAGYVADTSAVVKDVAREEKCETLGYHSERLAIGLGLLIVPEGVPI 546
Query: 471 RVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
RV+KNLR+C DCH+ KY+SK R +I+ DN RFH F DG CSCGD+W
Sbjct: 547 RVMKNLRVCDDCHNAIKYLSKCTG----RVVILRDNRRFHRFEDGLCSCGDFW 595
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKD 110
+F++MPERNV SW++++G Y G + + +F ++E V + C+
Sbjct: 180 LFDEMPERNVVSWSALIGGYADAGMHPAALWIFRSALEEAVEVNDFTVSCIVRVCATATL 239
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
+G V+ I + + V ++ ++ KCG ++ A F NL +
Sbjct: 240 FDLGAQVHARSIKTALDASPFVGSSLVSLYSKCGLVDRAYRIFSAAPERNLGI 292
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 141/511 (27%), Positives = 211/511 (41%), Gaps = 156/511 (30%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K + L+ + G+++H + K ES+L V NSL+D Y K +A F ++ + +
Sbjct: 135 KACAGLAQVLEGQKVHCF-VTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDV 193
Query: 216 VSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMI-Q 255
VSWN +++GY G ++ I+G+ + A+E F +M +
Sbjct: 194 VSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHE 253
Query: 256 TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL------ 309
+ PN ++L VL+ACA + LGK IH ++ R+ I++ +G AL +
Sbjct: 254 GGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLE 313
Query: 310 GTGSF---------VWNSLI---DMYGRCG------------AIQKNE------------ 333
G F W+ +I MYG ++ N+
Sbjct: 314 AKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTH 373
Query: 334 ------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC 387
G YF+MM + Y + P +E Y C+VDLL+RAG+ D + + M P
Sbjct: 374 AGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM--------PM 425
Query: 388 NPDI---------------AEHAAR---HLFELEPLSSGK-------------------- 409
P++ AE R + EL+ SG
Sbjct: 426 QPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASC 485
Query: 410 -----------------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
V+ F GD+SH +I + L ++K GY
Sbjct: 486 RLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKT 545
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K HSEKLALAFGLI+TS G+ +R++KNLR+C DCH K +SK
Sbjct: 546 DLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKI 605
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
EREI++ D RFHHF DG CSC DYW
Sbjct: 606 V----EREIVVRDRSRFHHFKDGKCSCNDYW 632
>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33760-like [Vitis vinifera]
Length = 561
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 201/459 (43%), Gaps = 113/459 (24%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +++S L+ G+ IH H L +SD V +L+ FYAK + A F ++ ++ +
Sbjct: 125 KACADISALRIGRPIHSHVLVCG-YDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTI 183
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
++WN+M++GY GF +E G F RM + ++ ++ + VL+AC+Q
Sbjct: 184 IAWNSMISGYDQNGFSKEAVGL------------FYRMRELGVEFDSATFVSVLSACSQS 231
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISI-QGLGTGS--------------FVWNSLI 320
LG +H Y++ + ++ +G +LI++ G S W ++I
Sbjct: 232 GALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMI 291
Query: 321 DMYGRCG-AIQKNEGWRYFEM--MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
YG G + E +R + M+++Y + P +E + CMVD+L RAG ++ ++K +
Sbjct: 292 SGYGMHGYGREAIELFRLMRIHGMRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDL 351
Query: 378 PFEPSSAEPC-------------NPDIAEHAARHLFELEPLSSG---------------- 408
+ P N D+ A HL EP +
Sbjct: 352 --KQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGRME 409
Query: 409 ---------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
K + F GD SH +I + L L K+ G
Sbjct: 410 RVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKYLDELMLRSKEAG 469
Query: 442 YMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHS 484
Y +PA HSEKLA+AFGL+ TS G +R++KNLRMC DCHS
Sbjct: 470 Y---VPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCHS 526
Query: 485 PTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++S REII+ D RFHHF +G CSC DYW
Sbjct: 527 AIKFISNIAN----REIIVRDKLRFHHFKNGLCSCQDYW 561
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 28/185 (15%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE--------LC 56
+ L + M + + T+ + + C ++ L +G +H+H++VCG + L
Sbjct: 100 DAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALI 159
Query: 57 AFLG----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
AF +F++MPER + +W SM+ Y+ G+ +E V LFY + + G
Sbjct: 160 AFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSA 219
Query: 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156
V ACS+ +G V+DY+++ F+ N + +++M+ +CG + A F+E
Sbjct: 220 TFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEM 279
Query: 157 DFSNL 161
+ N+
Sbjct: 280 NERNV 284
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 69/166 (41%), Gaps = 45/166 (27%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63
+ T+ + C + L+LG VH +++ ++ LG +F+
Sbjct: 218 SATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFD 277
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
+M ERNV +WT+M+ Y + GY E + LF L+ G+ + DY +
Sbjct: 278 EMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGMRQ---------------DYGLV 322
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169
+ E + C ++DM + G F + F + LK G++
Sbjct: 323 PRVEHHVC----MVDMLGRAG--------FLNEAFQYIKDLKQGEQ 356
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289
F I +++G A+ F+ RM+ + + + + V+ ACA + ++G+ IH +VL
Sbjct: 85 FNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVL 144
Query: 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
+ G + SFV +LI Y + G + E + F+ M +
Sbjct: 145 ----------------VCGYDSDSFVQAALIAFYAKSGDV--GEAKKVFDRMPER 181
>gi|302794420|ref|XP_002978974.1| hypothetical protein SELMODRAFT_109721 [Selaginella moellendorffii]
gi|300153292|gb|EFJ19931.1| hypothetical protein SELMODRAFT_109721 [Selaginella moellendorffii]
Length = 948
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 163/658 (24%), Positives = 262/658 (39%), Gaps = 201/658 (30%)
Query: 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHA--------HLIVCGVELC 56
+V +L+ M+ VT+ I C L LE G ++ A L
Sbjct: 353 SVMQILERMEAEGVKPNEVTFITILDTCKNLA-LEDGKKIQALASEQQQRSLDASARIGT 411
Query: 57 AFLGMF-------------EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103
A +GMF +K+ +++V ++T+M+ Y E + +F
Sbjct: 412 AVIGMFSRFSSMILAREAFDKISQKSVAAYTAMIAGYANNKQPREALAIF---------- 461
Query: 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163
E+ RV D ++I +AC P L+
Sbjct: 462 --QEMIRRRVAADNLVLAVAI----SACASIPDLE------------------------- 490
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
GK +H + L D +V +L+D Y++C ++ A F +I++ ++W+AM+A
Sbjct: 491 --EGKALHCSAMDLG-LHRDDVVRTALVDMYSRCGSMEDASAVFGEIERPDTIAWSAMIA 547
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK------- 276
ALG ++GD A+ +RM Q +P ++ GVLAACA
Sbjct: 548 --ALG----------RHGDPRGAVAMAARMQQDGWRPTGATMVGVLAACAHAGMMEEAAR 595
Query: 277 ---------GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRC 326
GF E+ V+R + ++ + + A + + W ++++ Y R
Sbjct: 596 KVHSLLVDGGFDSDPEVKFAVMRMYAKVGS-IQEACNAFDKIENPDVKAWTTMLEAYCRL 654
Query: 327 GA-------------IQKN-----------------------EGWRYFEMMKKEYNMEPA 350
G +Q++ E RYF+ MK +Y + P
Sbjct: 655 GKYNASDRALKLARMMQQDGVMPDKVTFVDILTACAYGGHLQEAGRYFKDMKFDYGLVPE 714
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFE--------------PSSAEPCNPDIAEHAA 396
ME Y +VD +AR G + + ++ +P + + P + E
Sbjct: 715 MEHYVALVDTVARKGYLQEAEDLIRMVPLQVNEIIWFALLECCKSQNDAPRTQRVGEIIM 774
Query: 397 RHLFELEPLSSG------------------------------------KVHSFIAGDTSH 420
+ +L+PL +G VH F+AGD SH
Sbjct: 775 KINNKLDPLGTGAHRVAARWEEAKRVRKLMTDRGIKKEPGKSMISIKNTVHGFVAGDRSH 834
Query: 421 SLVHKISEKLMRLYSEIKKIGY-------MKRIPACG-------HSEKLALAFGLISTSP 466
+I ++ R+ + IKK GY + +P HSE+LA+A+G ++T P
Sbjct: 835 PHTREIYAEVDRITALIKKDGYIPDTRYVLHDVPEDKKERLLWYHSERLAMAYGHMNTPP 894
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV-DGACSCGDYW 523
G PLRVIKNLR+CGDCH+ +K +K +REII+ DN RFHHF DG CSCGDYW
Sbjct: 895 GQPLRVIKNLRVCGDCHTASKLYAKV----MQREIIVRDNRRFHHFAKDGTCSCGDYW 948
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/379 (20%), Positives = 144/379 (37%), Gaps = 101/379 (26%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+Y + Q C +L + G +VH H+ +E F+G +F+ +
Sbjct: 65 SYQHVLQLCTRLRAMAEGARVHDHIRRSRMEAERFVGNDLVFMYAAFGNPGEARRIFDGL 124
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
N+ S+T++M Y G +E + + +L + LK
Sbjct: 125 GSHNILSFTAIMRAYVTAGDPDEALKILHL----------ARLK---------------A 159
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
F+ + P+L M ++ M+ +LSL G+ H +++ + D
Sbjct: 160 FKADP----PMLAMAVEAAGMK-----------RDLSL---GRFFH-DTIRRCGYDLDAG 200
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKI----KQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
V SL+ Y+ C ++ A F + +VSW +LA ++
Sbjct: 201 VAISLIGMYSNCGEIEAAVQAFDRAFLRAPSSDVVSWTKILAA------------CNEHR 248
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
D AL+ F RM + + P+ I VL + + GK IH VL ++ + +G
Sbjct: 249 DYIGALDLFDRMREQGVVPDRICFVTVLDSVIGLGDIAQGKRIHSMVLDRELERDSMIGT 308
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
A++ MY R G+IQ + R F+ + +P + + ++
Sbjct: 309 AVVK----------------MYARIGSIQ--DACRAFDRID-----QPGVAAWTVLIGAY 345
Query: 362 ARAGQFDDTLNFMKKMPFE 380
R G F+ + +++M E
Sbjct: 346 CRLGSFNSVMQILERMEAE 364
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,353,868,905
Number of Sequences: 23463169
Number of extensions: 351491731
Number of successful extensions: 857268
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5903
Number of HSP's successfully gapped in prelim test: 1109
Number of HSP's that attempted gapping in prelim test: 760162
Number of HSP's gapped (non-prelim): 44962
length of query: 523
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 376
effective length of database: 8,910,109,524
effective search space: 3350201181024
effective search space used: 3350201181024
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)