BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035847
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9G|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
pdb|3F9G|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
Length = 303
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSALNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|3F9F|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9F|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9H|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
pdb|3F9H|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
Length = 308
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSALNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|2OP9|A Chain A, Substrate Specificity Profiling And Identification Of A
New Class Of Inhibitor For The Major Protease Of The
Sars Coronavirus
pdb|2OP9|B Chain B, Substrate Specificity Profiling And Identification Of A
New Class Of Inhibitor For The Major Protease Of The
Sars Coronavirus
Length = 302
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 124 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 181
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 182 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 241
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 242 PLTQDH---VDILG 252
>pdb|2QIQ|A Chain A, Structure-Based Design And Synthesis And Biological
Evaluation Of Peptidomimetic Sars-3clpro Inhibitors
Length = 301
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3SNA|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Nsfsq-H (Soaking)
Length = 301
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3D62|A Chain A, Development Of Broad-Spectrum Halomethyl Ketone Inhibitors
Against Coronavirus Main Protease 3clpro
Length = 299
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 121 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 178
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 179 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 238
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 239 PLTQDH---VDILG 249
>pdb|3FZD|A Chain A, Mutation Of Asn28 Disrupts The Enzymatic Activity And
Dimeri Sars 3clpro
Length = 301
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|2QCY|A Chain A, Crystal Structure Of A Monomeric Form Of Severe Acute
Respiratory Syndrome (Sars) 3c-Like Protease Mutant
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3M3S|A Chain A, Crystal Structure Of Sars-Cov Main Protease Asn214ala
Mutant With Authorize N-Terminus
pdb|3M3S|B Chain B, Crystal Structure Of Sars-Cov Main Protease Asn214ala
Mutant With Authorize N-Terminus
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIAGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|2Q6G|A Chain A, Crystal Structure Of Sars-cov Main Protease H41a Mutant In
Complex With An N-terminal Substrate
pdb|2Q6G|B Chain B, Crystal Structure Of Sars-cov Main Protease H41a Mutant In
Complex With An N-terminal Substrate
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|1UJ1|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro)
pdb|1UJ1|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro)
pdb|1UK2|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph8.0
pdb|1UK2|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph8.0
pdb|1UK3|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph7.6
pdb|1UK3|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) At Ph7.6
pdb|1UK4|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) Complexed With An Inhibitor
pdb|1UK4|B Chain B, Crystal Structure Of Sars Coronavirus Main Proteinase
(3clpro) Complexed With An Inhibitor
pdb|2BX3|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(P43212)
pdb|2BX4|A Chain A, Crystal Structure Of Sars Coronavirus Main Proteinase
(P21212)
pdb|2A5A|A Chain A, Crystal Structure Of Unbound Sars Coronavirus Main
Peptidase In The Space Group C2
pdb|2A5I|A Chain A, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In The Space Group
C2
pdb|2C3S|A Chain A, Structure Of Sars Cov Main Proteinase At 1.9 A (Ph6.5)
pdb|1Z1I|A Chain A, Crystal Structure Of Native Sars Clpro
pdb|2GZ7|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GZ8|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GZ9|A Chain A, Structure-Based Drug Design And Structural Biology Study
Of Novel Nonpeptide Inhibitors Of Sars-Cov Main Protease
pdb|2GT7|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase At Ph
6.0 In The Space Group P21
pdb|2GT7|B Chain B, Crystal Structure Of Sars Coronavirus Main Peptidase At Ph
6.0 In The Space Group P21
pdb|2H2Z|A Chain A, Crystal Structure Of Sars-Cov Main Protease With Authentic
N And C-Termini
pdb|2HOB|A Chain A, Crystal Structure Of Sars-Cov Main Protease With Authentic
N And C-Termini In Complex With A Michael Acceptor N3
pdb|2GX4|A Chain A, Crystal Structure Of Sars Coronavirus 3cl Protease
Inhibitor Complex
pdb|2Z3C|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-Cov 3c-Like
Peptidase
pdb|2Z3D|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-cov 3c-like
Peptidase
pdb|2Z3E|A Chain A, A Mechanistic View Of Enzyme Inhibition And Peptide
Hydrolysis In The Active Site Of The Sars-Cov 3c-Like
Peptidase
pdb|2DUC|A Chain A, Crystal Structure Of Sars Coronavirus Main
Proteinase(3clpro)
pdb|2DUC|B Chain B, Crystal Structure Of Sars Coronavirus Main
Proteinase(3clpro)
pdb|2Z94|A Chain A, Complex Structure Of Sars-cov 3c-like Protease With Tdt
pdb|2Z9G|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With Pma
pdb|2Z9J|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With Epdtc
pdb|2Z9J|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With Epdtc
pdb|2Z9K|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1600
pdb|2Z9K|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1600
pdb|2Z9L|A Chain A, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1586
pdb|2Z9L|B Chain B, Complex Structure Of Sars-Cov 3c-Like Protease With
Jmf1586
pdb|2V6N|A Chain A, Crystal Structures Of The Sars-Coronavirus Main Proteinase
Inactivated By Benzotriazole Compounds
pdb|2ZU4|A Chain A, Complex Structure Of Sars-Cov 3cl Protease With Tg-0204998
pdb|2ZU5|A Chain A, Complex Structure Of Sars-Cov 3cl Protease With Tg-0205486
pdb|3IWM|A Chain A, The Octameric Sars-Cov Main Protease
pdb|3IWM|B Chain B, The Octameric Sars-Cov Main Protease
pdb|3IWM|C Chain C, The Octameric Sars-Cov Main Protease
pdb|3IWM|D Chain D, The Octameric Sars-Cov Main Protease
pdb|3SN8|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Cm- Ff-H (Soaking)
pdb|3SNB|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Dsfdq-H (Soaking)
pdb|3SNC|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Nstsq-H (Soaking)
pdb|3SND|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Cocrystallization)
pdb|3SND|B Chain B, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Cocrystallization)
pdb|3SNE|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With Ac- Estlq-H (Soaking)
pdb|3SZN|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Sg75
pdb|3TIT|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Sg81
pdb|3TIU|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha,Beta-Unsaturated Ethyl Ester
Inhibitor Sg82
pdb|3TNS|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor Sg83
pdb|3TNT|A Chain A, Crystal Structure Of Sars Coronavirus Main Protease
Complexed With An Alpha, Beta-Unsaturated Ethyl Ester
Inhibitor Sg85
pdb|3VB3|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease In Apo Form
pdb|3VB3|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease In Apo Form
pdb|3VB4|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With B4z
pdb|3VB4|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With B4z
pdb|3VB5|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With C4z
pdb|3VB5|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With C4z
pdb|3VB6|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With C6z
pdb|3VB6|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With C6z
pdb|3VB7|A Chain A, Crystal Structure Of Sars-Cov 3c-Like Protease With M4z
pdb|3VB7|B Chain B, Crystal Structure Of Sars-Cov 3c-Like Protease With M4z
pdb|3V3M|A Chain A, Severe Acute Respiratory Syndrome Coronavirus (sars-cov)
3cl Protease In Complex With
N-[(1r)-2-(tert-butylamino)-2-oxo-1-(pyridin-3-yl)
Ethyl]-n-(4-tert-butylphenyl)furan-2-carboxamide
Inhibitor
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|2A5K|A Chain A, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In Space Group
P212121
pdb|2A5K|B Chain B, Crystal Structures Of Sars Coronavirus Main Peptidase
Inhibited By An Aza-Peptide Epoxide In Space Group
P212121
pdb|2GT8|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase (With
An Additional Ala At The N-Terminus Of Each Protomer) In
The Space Group P43212
pdb|2GTB|A Chain A, Crystal Structure Of Sars Coronavirus Main Peptidase (With
An Additional Ala At The N-Terminus Of Each Protomer)
Inhibited By An Aza-Peptide Epoxide In The Space Group
P43212
Length = 307
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 124 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 181
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 182 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 241
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 242 PLTQDH---VDILG 252
>pdb|2VJ1|A Chain A, A Structural View Of The Inactivation Of The Sars-
Coronavirus Main Proteinase By Benzotriazole Esters
pdb|2VJ1|B Chain B, A Structural View Of The Inactivation Of The Sars-
Coronavirus Main Proteinase By Benzotriazole Esters
Length = 309
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 122 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 179
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 180 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 239
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 240 PLTQDH---VDILG 250
>pdb|2PWX|A Chain A, Crystal Structure Of G11a Mutant Of Sars-Cov 3c-Like
Protease
Length = 308
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|2ALV|A Chain A, X-Ray Structural Analysis Of Sars Coronavirus 3cl
Proteinase In Complex With Designed Anti-Viral
Inhibitors
Length = 306
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3M3V|A Chain A, Sars-Cov Main Protease Triple Mutant StiA WITH TWO
N-Terminal Additional Residue (Gly-Ser)
pdb|3M3V|B Chain B, Sars-Cov Main Protease Triple Mutant StiA WITH TWO
N-Terminal Additional Residue (Gly-Ser)
Length = 308
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|3M3T|A Chain A, Sars-Cov Main Protease Monomeric Arg298ala Mutant With
N-Terminal Additional Residues (Gly-Ser)
Length = 308
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|3E91|A Chain A, Crystal Structure Of Sars-Cov Mpro Mutant In P21 At Ph6.9
pdb|3E91|B Chain B, Crystal Structure Of Sars-Cov Mpro Mutant In P21 At Ph6.9
pdb|3EA7|A Chain A, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP P21
pdb|3EA7|B Chain B, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP P21
pdb|3EA8|A Chain A, Crystal Structure Of Sars-Cov Main Protease Triple Mutant
StiA IN SPACE GROUP C2
Length = 306
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|1WOF|A Chain A, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor N1
pdb|1WOF|B Chain B, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor N1
pdb|2AMD|A Chain A, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N9
pdb|2AMD|B Chain B, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N9
pdb|2AMQ|A Chain A, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N3
pdb|2AMQ|B Chain B, Crystal Structure Of Sars_cov Mpro In Complex With An
Inhibitor N3
pdb|2D2D|A Chain A, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor I2
pdb|2D2D|B Chain B, Crystal Structure Of Sars-Cov Mpro In Complex With An
Inhibitor I2
Length = 311
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 128 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 185
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 186 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 245
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 246 PLTQDH---VDILG 256
>pdb|1Q2W|A Chain A, X-Ray Crystal Structure Of The Sars Coronavirus Main
Protease
pdb|1Q2W|B Chain B, X-Ray Crystal Structure Of The Sars Coronavirus Main
Protease
Length = 308
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|2QC2|A Chain A, Crystal Structure Of Severe Acute Respiratory Syndrome
(Sars) 3c-Like Protease Asn214ala Mutant
pdb|2QC2|B Chain B, Crystal Structure Of Severe Acute Respiratory Syndrome
(Sars) 3c-Like Protease Asn214ala Mutant
Length = 308
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVIAGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|3EA9|A Chain A, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH ONE MOLECULE IN ONE ASYMMETRIC UNIT
pdb|3EAJ|A Chain A, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH TWO MOLECULES IN ONE ASYMMETRIC UNIT
pdb|3EAJ|B Chain B, Crystal Structure Of Sars-Cov Main Protease Quadruple
Mutant StifA WITH TWO MOLECULES IN ONE ASYMMETRIC UNIT
Length = 306
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3NAT|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
Ef_1977 From Enterococcus Faecalis
pdb|3NAT|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
Ef_1977 From Enterococcus Faecalis
Length = 164
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175
D +Y+++I +EG +++ VLD FI ++ + G+ + DF L E+ H
Sbjct: 83 DDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLLDF----LSDETAEVFELHW 138
Query: 176 KKDDLESDL 184
+ D E+ +
Sbjct: 139 EPADFEAXI 147
>pdb|3TD9|A Chain A, Crystal Structure Of A Leucine Binding Protein Livk
(Tm1135) From Thermotoga Maritima Msb8 At 1.90 A
Resolution
Length = 366
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
Query: 336 RYFEMMKKEYNMEPAM------EQYCCMVDLLARAGQFD 368
++ E+ K++Y EPA + Y ++D + RAG FD
Sbjct: 273 KFVEVYKEKYGKEPAALNALGYDAYXVLLDAIERAGSFD 311
>pdb|1Z1J|A Chain A, Crystal Structure Of Sars 3clpro C145a Mutant
pdb|1Z1J|B Chain B, Crystal Structure Of Sars 3clpro C145a Mutant
Length = 306
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 25/133 (18%)
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
S + Q M+PN L A GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSAGSVGFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGKF 181
Query: 311 TGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNMEP 349
G FV G I N W Y F ++ +YN EP
Sbjct: 182 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 241
Query: 350 AMEQYCCMVDLLA 362
+ + VD+L
Sbjct: 242 LTQDH---VDILG 251
>pdb|3ATW|A Chain A, Structure-Based Design, Synthesis, Evaluation Of
Peptide-Mimetic Sars 3cl Protease Inhibitors
pdb|3ATW|B Chain B, Structure-Based Design, Synthesis, Evaluation Of
Peptide-Mimetic Sars 3cl Protease Inhibitors
pdb|3AVZ|A Chain A, Structure Of Sars 3cl Protease With Peptidic Aldehyde
Inhibitor Containing Cyclohexyl Side Chain
pdb|3AW0|A Chain A, Structure Of Sars 3cl Protease With Peptidic Aldehyde
Inhibitor
pdb|3AW1|A Chain A, Structure Of Sars 3cl Protease Auto-Proteolysis Resistant
Mutant In The Absent Of Inhibitor
pdb|3AW1|B Chain B, Structure Of Sars 3cl Protease Auto-Proteolysis Resistant
Mutant In The Absent Of Inhibitor
Length = 306
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI S + +C V GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 180
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 181 FYGPFVDIQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 240
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 241 PLTQDH---VDILG 251
>pdb|3F9E|A Chain A, Crystal Structure Of The S139a Mutant Of Sars-Coronovirus
3c-Like Protease
Length = 308
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 251 SRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309
S + Q M+PN TI + + +C V GF + + + HH++L TGV A ++G
Sbjct: 125 SGVYQCAMRPNHTIKGAFLNGSCGSV-GFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGK 182
Query: 310 GTGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNME 348
G FV G I N W Y F ++ +YN E
Sbjct: 183 FYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYE 242
Query: 349 PAMEQYCCMVDLLA 362
P + + VD+L
Sbjct: 243 PLTQDH---VDILG 253
>pdb|2YY4|A Chain A, Crystal Structure Of Ms8104
pdb|2YY4|B Chain B, Crystal Structure Of Ms8104
Length = 316
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 48/133 (36%), Gaps = 25/133 (18%)
Query: 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310
S + Q M+PN L A GF + + + HH++L TGV A ++G
Sbjct: 123 SGVYQCAMRPNHTIKGSFLNGSAGSVGFNIDYDCVSFCYMHHMELPTGVH-AGTDLEGKF 181
Query: 311 TGSFVWNSLIDMYGRCGAIQKNE-GWRY--------------------FEMMKKEYNMEP 349
G FV G I N W Y F ++ +YN EP
Sbjct: 182 YGPFVDRQTAQAAGTDTTITLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEP 241
Query: 350 AMEQYCCMVDLLA 362
+ + VD+L
Sbjct: 242 LTQDH---VDILG 251
>pdb|1XZQ|B Chain B, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 149
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
M+ + G V + +LD+F+K G GEF ++ F N
Sbjct: 108 MVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLN 147
>pdb|1XZP|B Chain B, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
Length = 150
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160
M+ + G V + +LD+F+K G GEF ++ F N
Sbjct: 108 MVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLN 147
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase
(Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.75 A Resolution
Length = 451
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
LK+ KF+ + + +A ALG I+ + YGDGE +F R+I +
Sbjct: 126 LKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGE---DFAYRLISNGFE 182
Query: 260 PNTISLSGVLAACAQVKG 277
T S L+A ++G
Sbjct: 183 GETKSTWYSLSADITIRG 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,199,039
Number of Sequences: 62578
Number of extensions: 667568
Number of successful extensions: 1476
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 33
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)