BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035847
(523 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 183/651 (28%), Positives = 269/651 (41%), Gaps = 222/651 (34%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG----VELCAFLGM----------------FE 63
T + +F C +L NL LG Q+H+ I G VE C+ + M F+
Sbjct: 271 TLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE-CSLVDMYAKCSADGSVDDCRKVFD 329
Query: 64 KMPERNVFSWTSMM-GMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDH 111
+M + +V SWT+++ G E +NLF +I +G +KAC L D
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF---------- 158
RVGK V N+ V V+ MF+K RME A FE EK+
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449
Query: 159 -----------------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+N+ ++ G++IH +K L +
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG-LSCN 508
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+ Y+KC + A F+ ++ ++++SW +M ITGF ++G
Sbjct: 509 QPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSM------------ITGFAKHGFA 556
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
LE F++MI+ ++PN ++ +L+AC+ V L
Sbjct: 557 IRVLETFNQMIEEGVKPNEVTYVAILSACSHV--------------------------GL 590
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
+S EGWR+F M +++ ++P ME Y CMVDLL R
Sbjct: 591 VS---------------------------EGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
Query: 364 AGQFDDTLNFMKKMPFEP----------SSAEPCNPDIAEHAARHLFELEP--------L 405
AG D F+ MPF+ + N ++ + AAR + EL+P L
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Query: 406 SS-----------------------------------GKVHSFIAGDTSHSLVHKISEKL 430
S+ K+H F GDT+H H+I ++L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
Query: 431 MRLYSEIKKIGYMKRIPAC------------------GHSEKLALAFGLISTSPGSPLRV 472
RL +EIK+ GY+ HSEK+A+AFGLISTS P+RV
Sbjct: 744 DRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRV 803
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH+ KY+S REI++ D RFHHF DG CSC DYW
Sbjct: 804 FKNLRVCGDCHNAMKYISTVSG----REIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 131/329 (39%), Gaps = 95/329 (28%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+VT++ + + C + + LG VHA LI +E + L +FE
Sbjct: 62 SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121
Query: 64 KMP---ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
M +R+V SW++MM Y G + + +F ++ G+ V D Y Y
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL-----------VPND-YCY 169
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
I+ AC F+ GR+ + L+K G
Sbjct: 170 TAVIR----ACSNSD----FVGVGRVTLGF------------LMKTGH-----------F 198
Query: 181 ESDLLVNNSLMDFYAKCR-YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
ESD+ V SL+D + K + A+ F K+ + ++V+W M IT Q
Sbjct: 199 ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM------------ITRCMQ 246
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
G A+ FF M+ + + + +LS V +ACA+++ LGK++H + +R
Sbjct: 247 MGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS-------- 298
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGA 328
G V SL+DMY +C A
Sbjct: 299 ----------GLVDDVECSLVDMYAKCSA 317
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 241 GDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GD A+ M + ++P ++++ S +L +C + + F+LGK +H ++ I+
Sbjct: 40 GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIE----- 94
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
S ++NSLI +Y + G K E FE M++
Sbjct: 95 -----------PDSVLYNSLISLYSKSGDSAKAED--VFETMRR 125
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 184/690 (26%), Positives = 288/690 (41%), Gaps = 207/690 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGM----------------FEKM 65
+ + + C L +G ++H L+ G ++L A G+ F++M
Sbjct: 137 NFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRM 196
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKDHRVGK 115
PER++ SW +++ Y+ G + + + +E V A S L+ VGK
Sbjct: 197 PERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGK 256
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE---EKDF-------------- 158
+++ Y + F+ + ++DM+ KCG +E A F+ E++
Sbjct: 257 EIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNE 316
Query: 159 -------------------------------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
++L L+ G+ IH ++ L+ ++ V
Sbjct: 317 NPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG-LDRNVSVV 375
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
NSL+ Y KC+ + A F K++ + LVSWNAM I GF Q G AL
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAM------------ILGFAQNGRPIDAL 423
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
+FS+M ++P+T + V+ A A++ K IHG V+R + + V AL+ +
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMY 483
Query: 308 GLGTGSFV---------------WNSLIDMYG---------------RCGAIQKN----- 332
+ WN++ID YG + G I+ N
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL 543
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
G + F MMK+ Y++E +M+ Y MVDLL RAG+ ++ +F+ +MP
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 380 EPSSA------EPC----NPDIAEHAARHLFELEPLSSG--------------------- 408
+P+ C N + AE AA LFEL P G
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663
Query: 409 ----------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+VHSF +G T+H KI L +L IK+ GY+
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
K HSEKLA++FGL++T+ G+ + V KNLR+C DCH+ TKY+S
Sbjct: 724 NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVT 783
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REI++ D RFHHF +GACSCGDYW
Sbjct: 784 G----REIVVRDMQRFHHFKNGACSCGDYW 809
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 35/182 (19%)
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV--AHCKFSKIKQKHLVSWN 219
S LK ++I P + K+ L + L+ + CRY V A F I K V ++
Sbjct: 48 SSLKELRQILPL-VFKNGLYQEHFFQTKLVSLF--CRYGSVDEAARVFEPIDSKLNVLYH 104
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
ML G+A + D + AL+FF RM D++P + + +L C +
Sbjct: 105 TMLKGFA------------KVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELR 152
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339
+GKEIHG +++ +G + L ++ GL +MY +C Q NE + F+
Sbjct: 153 VGKEIHGLLVK------SGFSLDLFAMTGLE----------NMYAKCR--QVNEARKVFD 194
Query: 340 MM 341
M
Sbjct: 195 RM 196
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 32/181 (17%)
Query: 4 KNVTLLLQSM--DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------- 53
K L+ Q M + P + +V AL C L +LE G +H + G+
Sbjct: 319 KEAMLIFQKMLDEGVKPTDVSVMGAL--HACADLGDLERGRFIHKLSVELGLDRNVSVVN 376
Query: 54 ----------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE---- 99
E+ MF K+ R + SW +M+ + G + +N F +
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKP 436
Query: 100 ------GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153
V A +EL K ++ ++ + N V ++DM+ KCG + +A F
Sbjct: 437 DTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIF 496
Query: 154 E 154
+
Sbjct: 497 D 497
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 173/675 (25%), Positives = 280/675 (41%), Gaps = 213/675 (31%)
Query: 43 QVHAHLIVCGVELCAFL------------------GMFEKMPERNVFSWTSMMGMYNVLG 84
Q+HA L+V G++ FL +F+ +P +F W +++ Y+
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 85 YYEEIV------NLFYLLIDEGVY----KACSELKDHRVGKDVYDYMISIKFEGNACVKR 134
++++ + L + D + KACS L ++G+ V+ + + F+ + V+
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQN 158
Query: 135 PVLDMFIKCGRMEMASGEFEE--------------------------------------- 155
++ ++ KC R+ A FE
Sbjct: 159 GLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDV 218
Query: 156 -----------KDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVA 203
F+ L LK G+ IH +K ++E DLL+ SL YAKC + A
Sbjct: 219 KPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLI--SLNTMYAKCGQVATA 276
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F K+K +L+ WNAM++GYA G+ E A++ F MI D++P+TI
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYARE------------AIDMFHEMINKDVRPDTI 324
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-------SIQG-------- 308
S++ ++ACAQV + + ++ YV R + + ALI S++G
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384
Query: 309 LGTGSFVWNSLIDMYG---------------RCGAIQKN------------------EGW 335
L VW+++I YG G + N EGW
Sbjct: 385 LDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGW 444
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP 389
+F M ++ + P + Y C++DLL RAG D +K MP +P C
Sbjct: 445 WFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKK 503
Query: 390 ----DIAEHAARHLFELEPLSSG------------------------------------- 408
++ E+AA+ LF ++P ++G
Sbjct: 504 HRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCS 563
Query: 409 ------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPA-------------- 448
++ +F GD SH +I ++ + S +K+ G++ A
Sbjct: 564 WVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETL 623
Query: 449 CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYR 508
C HSE++A+A+GLIST G+PLR+ KNLR C +CH+ TK +SK +REI++ D R
Sbjct: 624 CSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLV----DREIVVRDTNR 679
Query: 509 FHHFVDGACSCGDYW 523
FHHF DG CSCGDYW
Sbjct: 680 FHHFKDGVCSCGDYW 694
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 187/704 (26%), Positives = 283/704 (40%), Gaps = 209/704 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L +S DL P+ + TYA + G +H +V G + LG
Sbjct: 109 LRKSTDL-KPN--SSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYF 165
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100
+F++MPE++ W +M+ Y Y E + +F LI+E
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLL 225
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG---EFEEK 156
+ A +EL++ R+G ++ + V + ++ KCG+++M S EF +
Sbjct: 226 DILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 157 DFSNLSLLKHG--------------KE----------------------------IHPHH 174
D + + HG KE IH +
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYC 345
Query: 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234
LK + L S V+ +L Y+K ++ A F + +K L SWNAM++GY
Sbjct: 346 LKSNFL-SHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY--------- 395
Query: 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294
TQ G E A+ F M +++ PN ++++ +L+ACAQ+ LGK +H V +
Sbjct: 396 ---TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE 452
Query: 295 LSTGVGIALISIQG---------------LGTGSFVWNSLIDMYGRCGAIQK-------- 331
S V ALI + WN++I YG G Q+
Sbjct: 453 SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEM 512
Query: 332 -------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQ 366
EG F M Y EP+++ Y CMVD+L RAG
Sbjct: 513 LNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGH 572
Query: 367 FDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------KV 410
L F++ M EP S+ C + ++A + LFEL+P + G +
Sbjct: 573 LQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNI 632
Query: 411 HS-------------------------------------FIAGDTSHSLVHKISEKLMRL 433
HS F +GD SH V +I EKL +L
Sbjct: 633 HSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKL 692
Query: 434 YSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMC 479
++++ GY + + HSE+LA+AFGLI+T PG+ +R+IKNLR+C
Sbjct: 693 EGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVC 752
Query: 480 GDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCH+ TK +SK ER I++ D RFHHF DG CSCGDYW
Sbjct: 753 LDCHTVTKLISKIT----ERVIVVRDANRFHHFKDGVCSCGDYW 792
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 171/656 (26%), Positives = 286/656 (43%), Gaps = 177/656 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFEKMPERN 69
+F+ C +L+ ++G Q+H V G+++ AF+ +F++M +++
Sbjct: 122 LFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKD 181
Query: 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN 129
V + ++++ Y G EE+V + SE++ + ++ + +
Sbjct: 182 VVTCSALLCAYARKGCLEEVVRIL------------SEMESSGIEANIVSWNGILSGFNR 229
Query: 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDF----SNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + + MF K + + + +L G+ IH + +K+ L+ D
Sbjct: 230 SGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLK-DKC 288
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG-----------FREE- 233
V ++++D Y K ++ F++ + NA + G + G F+E+
Sbjct: 289 VISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQT 348
Query: 234 -----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
I G Q G ALE F M ++PN +++ +L AC + G+
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGR 408
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQG--------------LGTGSFV-WNSLID---MYG 324
HG+ +R H+ + VG ALI + + T + V WNSL++ M+G
Sbjct: 409 STHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHG 468
Query: 325 R-----------------------------CGAIQ-KNEGWRYFEMMKKEYNMEPAMEQY 354
+ CG + +EGW+YF+MM +EY ++P +E Y
Sbjct: 469 KAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHY 528
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMV+LL RAG+ + + +K+MPFEP S C N D+AE AA LF LEP
Sbjct: 529 SCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEP 588
Query: 405 LSSG-------------------------------------------KVHSFIAGDTSHS 421
+ G +V++ +AGD SH
Sbjct: 589 ENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHP 648
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPG 467
+ +I+EK+ + E++K G+ + GHSEKLA+ FGL++T G
Sbjct: 649 QIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG 708
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+PL+VIKNLR+CGDCH+ K++S REI + D RFHHF DG CSCGD+W
Sbjct: 709 TPLQVIKNLRICGDCHAVIKFISSYAG----REIFIRDTNRFHHFKDGICSCGDFW 760
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
K ++D ++ L+ Y+ A I + S+++++ YAL +
Sbjct: 43 KSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLI--YAL----TKAKL 96
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
FTQ ++ FSRM + P++ L + CA++ FK+GK+IH
Sbjct: 97 FTQ------SIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIH----------- 139
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ + GL +FV S+ MY RCG
Sbjct: 140 -----CVSCVSGLDMDAFVQGSMFHMYMRCG 165
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 170/637 (26%), Positives = 273/637 (42%), Gaps = 191/637 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKD 110
+F++M ER+V SW S++ Y G E+ +++F ++ G V+ C++ +
Sbjct: 252 VFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRL 311
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA--------------------- 149
+G+ V+ + F +LDM+ KCG ++ A
Sbjct: 312 ISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAG 371
Query: 150 ------SGE----FEEKDFSNLS-----------------LLKHGKEIHPHHLKKDDLES 182
+GE FEE + +S LL GK +H +K++DL
Sbjct: 372 YAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVH-EWIKENDLGF 430
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
D+ V+N+LMD YAKC ++ A FS+++ K ++SWN ++ GY+ + E
Sbjct: 431 DIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANE--------- 481
Query: 243 GETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F+ +++ P+ +++ VL ACA + F G+EIHGY++R+ V
Sbjct: 482 ---ALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVAN 538
Query: 302 ALISI--------------QGLGTGSFV-WNSLIDMYG---------------RCGAIQK 331
+L+ + + + V W +I YG R I+
Sbjct: 539 SLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEA 598
Query: 332 NE------------------GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+E GWR+F +M+ E +EP +E Y C+VD+LAR G F
Sbjct: 599 DEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRF 658
Query: 374 MKKMPFEPSS----AEPC------NPDIAEHAARHLFELEPLSSG--------------- 408
++ MP P + A C + +AE A +FELEP ++G
Sbjct: 659 IENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKW 718
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
+V+ F+AGD+S+ I L ++ + + +
Sbjct: 719 EQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEE 778
Query: 441 GYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY K CGHSEKLA+A G+IS+ G +RV KNLR+CGDCH
Sbjct: 779 GYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMA 838
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK + REI++ D+ RFH F DG CSC +W
Sbjct: 839 KFMSKLTR----REIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 43/248 (17%)
Query: 146 MEMASGEFE--EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVA 203
+EM S F K FS+L + G+++H LK E + V NSL+ FY K + + A
Sbjct: 191 VEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSA 249
Query: 204 HCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263
F ++ ++ ++SWN+++ GY G E L F +M+ + ++ +
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGL------------AEKGLSVFVQMLVSGIEIDLA 297
Query: 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323
++ V A CA + LG+ +H S GV N+L+DMY
Sbjct: 298 TIVSVFAGCADSRLISLGRAVH----------SIGVKAC------FSREDRFCNTLLDMY 341
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
+CG + + F M + ++ Y M+ AR G + + FE
Sbjct: 342 SKCGDLDSAKA--VFREMS-----DRSVVSYTSMIAGYAREGLAGEAVKL-----FEEME 389
Query: 384 AEPCNPDI 391
E +PD+
Sbjct: 390 EEGISPDV 397
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GKE+ + ++ + D + + L Y C LK A F ++K + + WN ++
Sbjct: 110 LKDGKEV-DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMN 168
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
A + GD ++ F +M+ + ++ ++ + S V + + ++ G++
Sbjct: 169 ELA------------KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQ 216
Query: 284 IHGYVLRHHIQLSTGVGIALISI----QGLGTGSFV-----------WNSLIDMYGRCGA 328
+HG++L+ VG +L++ Q + + V WNS+I+ Y G
Sbjct: 217 LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276
Query: 329 IQK 331
+K
Sbjct: 277 AEK 279
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 25/145 (17%)
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292
++ F + G+ E A++ + D+ P T L VL CA K K GKE+ ++ +
Sbjct: 67 QLRRFCESGNLENAVKLLCVSGKWDIDPRT--LCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352
+ + +G L SL MY CG ++ E R F+ E +E A+
Sbjct: 125 FVIDSNLGSKL--------------SL--MYTNCGDLK--EASRVFD----EVKIEKAL- 161
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKM 377
+ +++ LA++G F ++ KKM
Sbjct: 162 FWNILMNELAKSGDFSGSIGLFKKM 186
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 271/664 (40%), Gaps = 213/664 (32%)
Query: 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF---- 58
++N + + M + TY I + C +L +LELG Q+H+ +I +L A+
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530
Query: 59 -LGMFEKMPE-------------RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV--- 101
+ M+ K+ + ++V SWT+M+ Y + ++ + F ++D G+
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 590
Query: 102 -------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA----- 149
AC+ L+ + G+ ++ F + + ++ ++ +CG++E +
Sbjct: 591 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFE 650
Query: 150 -------------------SGEFEE------------------------KDFSNLSLLKH 166
SG EE K S + +K
Sbjct: 651 QTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQ 710
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK++H + K +S+ V N+L+ YAKC + A +F ++ K+ VSWNA++ Y+
Sbjct: 711 GKQVHAV-ITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYS 769
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
GF G AL+ F +MI ++++PN ++L GVL+AC+ +
Sbjct: 770 KHGF------------GSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI----------- 806
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
L+D +G YFE M EY
Sbjct: 807 -------------------------------GLVD-----------KGIAYFESMNSEYG 824
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
+ P E Y C+VD+L RAG F+++MP +P + C N +I E AA
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
HL ELEP S +HSF
Sbjct: 885 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMK-------------RIPACG-HSEKLALAF 459
GD +H L +I E L +IGY++ + P HSEKLA++F
Sbjct: 945 YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 1004
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GL+S P+ V+KNLR+C DCH+ K+VSK REII+ D YRFHHF GACSC
Sbjct: 1005 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSN----REIIVRDAYRFHHFEGGACSC 1060
Query: 520 GDYW 523
DYW
Sbjct: 1061 KDYW 1064
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/436 (20%), Positives = 169/436 (38%), Gaps = 125/436 (28%)
Query: 18 PDECTVTYALIFQRCPKLN-NLELGIQVHAHLIVCGVE------------------LCAF 58
P+ T+ + L + C K N +L+ G ++H+ ++ G++ L
Sbjct: 82 PNHQTLKWLL--EGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F++MPER +F+W M+ E+ LF ++ E GV +AC
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC--- 196
Query: 109 KDHRVGKDVYDYM-ISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEE---KDFSN- 160
+ V DV + + I ++G + V P++D++ + G +++A F+ KD S+
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 161 --------------------------------------------LSLLKHGKEIHPHHLK 176
+ L+ G+++H LK
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Query: 177 KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITG 236
SD V N+L+ Y L A FS + Q+ V++N + I G
Sbjct: 317 LG-FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTL------------ING 363
Query: 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296
+Q G GE A+E F RM ++P++ +L+ ++ AC+ G+++H Y +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTK------ 417
Query: 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356
G + + + +L+++Y +C I+ +Y +E +E
Sbjct: 418 ----------LGFASNNKIEGALLNLYAKCADIE----------TALDYFLETEVENVVL 457
Query: 357 MVDLLARAGQFDDTLN 372
+L G DD N
Sbjct: 458 WNVMLVAYGLLDDLRN 473
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 127/321 (39%), Gaps = 75/321 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCG-----------VELCAFLG-------MFEKM 65
++ + C K+ +LE+G Q+H ++ G V L LG +F M
Sbjct: 290 AFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNM 349
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
+R+ ++ +++ + GY E+ + LF + +G+ + L
Sbjct: 350 SQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS--------------- 394
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ + C A G L G+++H + K S+
Sbjct: 395 -------------LVVACS----ADGT-----------LFRGQQLHAYTTKLG-FASNNK 425
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +L++ YAKC ++ A F + + +++V WN ML Y L D
Sbjct: 426 IEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGL------------LDDLRN 473
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+ F +M ++ PN + +L C ++ +LG++IH +++ + QL+ V LI
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 306 IQG-LGTGSFVWNSLIDMYGR 325
+ LG W+ LI G+
Sbjct: 534 MYAKLGKLDTAWDILIRFAGK 554
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 182/637 (28%), Positives = 276/637 (43%), Gaps = 195/637 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
TY L+ C ++L ++VH H++ G + FL +F+K
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG--KDVYDYMIS 123
+R ++ W ++ + G+ EE++ L++ K +R+G D + Y
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYW--------------KMNRIGVESDRFTYTYV 184
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183
+K ACV +C ++ L GKEIH H L + S
Sbjct: 185 LK----ACVAS-------EC----------------TVNHLMKGKEIHAH-LTRRGYSSH 216
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
+ + +L+D YA+ + A F + +++VSW+AM+A YA + G
Sbjct: 217 VYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYA------------KNGKA 264
Query: 244 ETALEFFSRMIQ--TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
AL F M++ D PN++++ VL ACA + + GK IHGY+LR + V
Sbjct: 265 FEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVIS 324
Query: 302 ALISIQG----LGTGSFV-----------WNSLIDMYGRCG----AIQ------------ 330
AL+++ G L G V WNSLI YG G AIQ
Sbjct: 325 ALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASP 384
Query: 331 -----------------KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
EG R FE M +++ ++P +E Y CMVDLL RA + D+
Sbjct: 385 TPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKM 444
Query: 374 MKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG--------------- 408
++ M EP S C N ++AE A+R LF LEP ++G
Sbjct: 445 VQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMW 504
Query: 409 ----------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
K++SF++ D + L+ +I L++L ++K+
Sbjct: 505 DEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEK 564
Query: 441 GYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPT 486
GY+ + GHSEKLALAFGLI+TS G P+R+ KNLR+C DCH T
Sbjct: 565 GYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFT 624
Query: 487 KYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K++SK E+EI++ D RFH F +G CSCGDYW
Sbjct: 625 KFISKF----MEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 37/162 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LCAFLGM-------------FE 63
+VT + Q C L LE G +H +++ G++ + A + M F+
Sbjct: 285 SVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD 344
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+M +R+V SW S++ Y V GY ++ + +F ++ G V ACS
Sbjct: 345 RMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEE 404
Query: 114 GKDVYDYM-----ISIKFEGNACVKRPVLDMFIKCGRMEMAS 150
GK +++ M I + E AC ++D+ + R++ A+
Sbjct: 405 GKRLFETMWRDHGIKPQIEHYAC----MVDLLGRANRLDEAA 442
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 177/646 (27%), Positives = 273/646 (42%), Gaps = 195/646 (30%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG---------------- 60
PDE T++ L C L L G ++HA+ + G ++ +F+G
Sbjct: 300 PDEFTISSVL--PACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVY 118
+F+ M +R + W +M+ Y+ + +E + LF G+ ++ L + V
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI-----GMEESAGLLANSTTMAGVV 412
Query: 119 DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178
ACV+ SG F K+ + ++K G
Sbjct: 413 P----------ACVR----------------SGAFSRKEAIHGFVVKRG----------- 435
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L+ D V N+LMD Y++ + +A F K++ + LV+WN M+ GY E+
Sbjct: 436 -LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLL 494
Query: 239 QYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
++ R + + ++PN+I+L +L +CA + GKEIH Y +++++
Sbjct: 495 H------KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL 548
Query: 294 QLSTGVGIALISI---------------QGLGTGSFVWNSLIDMYGRCGAIQK------- 331
VG AL+ + Q WN +I YG G Q+
Sbjct: 549 ATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRM 608
Query: 332 --------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
+EG R F +MK +Y +EP+ + Y C+VDLL RAG
Sbjct: 609 MMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAG 668
Query: 366 QFDDTLNFMKKMP--FEPSSAEPC---------NPDIAEHAARHLFELEP---------- 404
+ + M MP F + A N +I E AA++L +LEP
Sbjct: 669 RIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLA 728
Query: 405 ---LSSG------------------------------KVHSFIAGDTSHSLVHKISEKLM 431
S+G +VH F+AGD+SH K+S L
Sbjct: 729 NIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLE 788
Query: 432 RLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLR 477
L+ ++K GY+ K I CGHSEKLA+AFG+++TSPG+ +RV KNLR
Sbjct: 789 TLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLR 848
Query: 478 MCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+C DCH TK++SK +REII+ D RFH F +G CSCGDYW
Sbjct: 849 VCNDCHLATKFISKIV----DREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/392 (22%), Positives = 152/392 (38%), Gaps = 110/392 (28%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV-------------------ELCAF 58
PD + + + L ++ELG Q+HAH+ G + A
Sbjct: 95 PD--NYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F+++ ERN SW S++ +E + F ++DE V ACS L
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 109 ---KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS---GEFEEKDF---- 158
+ +GK V+ Y + K E N+ + ++ M+ K G++ + G F +D
Sbjct: 213 PMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWN 271
Query: 159 -----------------------------------------SNLSLLKHGKEIHPHHLKK 177
S+L +L+ GKE+H + LK
Sbjct: 272 TVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKN 331
Query: 178 DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGF 237
L+ + V ++L+D Y C+ + F + + + WNAM+AGY+
Sbjct: 332 GSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS----------- 380
Query: 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297
D E L F + N+ +++GV+ AC + F + IHG+V++
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVK------- 433
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+GL FV N+L+DMY R G I
Sbjct: 434 ---------RGLDRDRFVQNTLMDMYSRLGKI 456
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 136/312 (43%), Gaps = 43/312 (13%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++L ++ GK+IH H K + V N+L++ Y KC + F +I +++
Sbjct: 105 KAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ 164
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSWN++ I+ + E ALE F M+ +++P++ +L V+ AC+ +
Sbjct: 165 VSWNSL------------ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 212
Query: 276 ---KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332
+G +GK++H Y LR SF+ N+L+ MYG+ G + +
Sbjct: 213 PMPEGLMMGKQVHAYGLRKG-----------------ELNSFIINTLVAMYGKLGKLASS 255
Query: 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIA 392
+++ + + + ++ L + Q + L ++++M E +
Sbjct: 256 ------KVLLGSFGGRD-LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308
Query: 393 EHAARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGH 451
A H LE L +GK +H++ + S + L+ +Y K++ +R+
Sbjct: 309 LPACSH---LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 365
Query: 452 SEKLALAFGLIS 463
K+ L +I+
Sbjct: 366 DRKIGLWNAMIA 377
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
A+ + MI ++P+ + +L A A ++ +LGK+IH +V + G G+ ++
Sbjct: 81 AVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKF------GYGVDSVT 134
Query: 306 IQGLGTGSFVWNSLIDMYGRCG 327
+ N+L+++Y +CG
Sbjct: 135 VA---------NTLVNLYRKCG 147
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 168/633 (26%), Positives = 263/633 (41%), Gaps = 165/633 (26%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVE------------LCAFLGMFEKMPERNVF---- 71
+ + C + +L G VH ++ G++ LGM K+ NVF
Sbjct: 111 VLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMP 170
Query: 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
TS G +V E + F + V++ KDV Y I +
Sbjct: 171 QRTSNSGDEDVKA--ETCIMPFGIDSVRRVFEVMPR-------KDVVSYNTIIAGYAQSG 221
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
+ L M + G ++ F FS + GKEIH + ++K ++SD+ +
Sbjct: 222 MYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG-IDSDVYIG 280
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+SL+D YAK ++ + FS++ + +SWN+++AGY Q G AL
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY------------VQNGRYNEAL 328
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI- 306
F +M+ ++P ++ S V+ ACA + LGK++HGYVLR + + AL+ +
Sbjct: 329 RLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMY 388
Query: 307 -------------------------------------------------QGLGTGSFVWN 317
QG+ +
Sbjct: 389 SKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFV 448
Query: 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+++ G + +E W YF M K Y + +E Y + DLL RAG+ ++ NF+ KM
Sbjct: 449 AVLTACSHVGLV--DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKM 506
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
EP+ + C N ++AE A +F ++ + G
Sbjct: 507 CVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMA 566
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K H F++GD SH + KI+E L + +++K GY+
Sbjct: 567 KLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVA 626
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
KR GHSE+LA+AFG+I+T PG+ +RV KN+R+C DCH K++S
Sbjct: 627 DTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFIS 686
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ DN RFHHF G CSCGDYW
Sbjct: 687 KIT----EREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/242 (18%), Positives = 94/242 (38%), Gaps = 41/242 (16%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K+ + + K++H ++ L + ++ Y + L A F +K +
Sbjct: 13 KNPTRIKSKSQAKQLHAQFIRTQSLSHT--SASIVISIYTNLKLLHEALLLFKTLKSPPV 70
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
++W ++ I FT AL F M + P+ VL +C +
Sbjct: 71 LAWKSV------------IRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMM 118
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--LGTGSFVWNSLIDMYGRCGAIQKNE 333
+ G+ +HG+++R + G AL+++ LG GS + S+ +++ N
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI--SVGNVFDEMPQRTSNS 176
Query: 334 G------------------WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
G R FE+M ++ + Y ++ A++G ++D L ++
Sbjct: 177 GDEDVKAETCIMPFGIDSVRRVFEVMPRK-----DVVSYNTIIAGYAQSGMYEDALRMVR 231
Query: 376 KM 377
+M
Sbjct: 232 EM 233
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 167/659 (25%), Positives = 271/659 (41%), Gaps = 187/659 (28%)
Query: 13 MDLTNPDEC---TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------- 60
+D+ + +C T+ + + ++++L LG +H + V F+
Sbjct: 119 LDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFS 178
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
+F + E++V SW SM+ + G ++ + LF + E GV
Sbjct: 179 CGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV 238
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
AC+++++ G+ V Y+ + N + +LDM+ KCG +E A F+ +
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME---- 294
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E D + +++D YA + A + + QK +V+WNA+
Sbjct: 295 -------------------EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNAL 335
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
++ Y G E + F +Q +M+ N I+L L+ACAQV +LG
Sbjct: 336 ISAYEQNG-----------KPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384
Query: 282 KEIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MY 323
+ IH Y+ +H I+++ V ALI + FVW+++I M+
Sbjct: 385 RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 324 GRCGA-------------IQKN------------------EGWRYFEMMKKEYNMEPAME 352
G CG ++ N E F M+ Y + P +
Sbjct: 445 G-CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE----------PCNPDIAEHAARHLFEL 402
Y C+VD+L R+G + + F++ MP PS++ N ++AE A L EL
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLEL 563
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
EP + G +H F++GD +
Sbjct: 564 EPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNA 623
Query: 420 HSLVHKISEKLMRLYSEIKKIGY---------------MKRIPACGHSEKLALAFGLIST 464
H + K+ KL + ++K GY MK HSEKLA+ +GLIST
Sbjct: 624 HPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLIST 683
Query: 465 SPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+RVIKNLR+CGDCHS K +S+ +REII+ D YRFHHF +G CSC D+W
Sbjct: 684 EAPKVIRVIKNLRVCGDCHSVAKLISQL----YDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 43/226 (19%)
Query: 164 LKHGKEIHPHHLK----KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
L+ K+ H H ++ D + L + + +A Y + F +I + + +WN
Sbjct: 43 LRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKV---FDEIPKPNSFAWN 99
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGF 278
++ YA G D ++ F M+ ++ PN + ++ A A+V
Sbjct: 100 TLIRAYASGP------------DPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338
LG+ +HG ++ +G+ FV NSLI Y CG + + + F
Sbjct: 148 SLGQSLHGMAVK----------------SAVGSDVFVANSLIHCYFSCGDL--DSACKVF 189
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384
+K E + + M++ + G D L KKM E A
Sbjct: 190 TTIK-----EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKA 230
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 209 bits (533), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 175/636 (27%), Positives = 261/636 (41%), Gaps = 190/636 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY---------LLIDEGVYKACSELKDH 111
+F++M R+ S+ +M+ Y L EE V +F LL V +AC L+D
Sbjct: 264 VFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDL 323
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA-------------------SGE 152
+ K +Y+YM+ F + V+ ++D++ KCG M A SG
Sbjct: 324 SLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY 383
Query: 153 FEEKDF-----------------------------SNLSLLKHGKEIHPHHLKKDDLESD 183
+ D + L+ LK GK +H + +K + D
Sbjct: 384 IQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG-ICID 442
Query: 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
L V+N+L+D YAKC + + FS + V+WN + I+ ++GD
Sbjct: 443 LSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTV------------ISACVRFGDF 490
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
T L+ ++M ++++ P+ + L CA + +LGKEIH +LR + +G AL
Sbjct: 491 ATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNAL 550
Query: 304 ISIQG----LGTGSFV-----------WNSLIDMYGRCGAIQK----------------- 331
I + L S V W +I YG G +K
Sbjct: 551 IEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDS 610
Query: 332 ----------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375
+EG FE MK Y ++P +E Y C+VDLL+R+ + F++
Sbjct: 611 VVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQ 670
Query: 376 KMPFEPSSA------EPCNP----DIAEHAARHLFELEPLSSG----------------- 408
MP +P ++ C + AE +R + EL P G
Sbjct: 671 AMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDK 730
Query: 409 --------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY 442
VH F +GD S I + L LYS + K GY
Sbjct: 731 VSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGY 790
Query: 443 M---------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+ KR CGHSE+LA+AFGL++T PG+PL+V+KNLR+CGDCH TK
Sbjct: 791 IPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTK 850
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK REI++ D RFH F DG CSC D W
Sbjct: 851 LISKIVG----REILVRDANRFHLFKDGTCSCKDRW 882
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 152/390 (38%), Gaps = 108/390 (27%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+PD+ T+ + + C L + E+G V+ ++ G E F+G
Sbjct: 102 VSPDK--YTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID----------EGVYKACSE 107
+F++MP R++ SW S++ Y+ GYYEE + +++ L + V A
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN------- 160
L + G+ ++ + + V ++ M++K R A F+E D +
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279
Query: 161 ------LSLLKHGKEIHPHHLKKDDLESDLL----------------------------- 185
L +++ + +L D + DLL
Sbjct: 280 ICGYLKLEMVEESVRMFLENL--DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAG 337
Query: 186 ------VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
V N L+D YAKC + A F+ ++ K VSWN++++GY Q
Sbjct: 338 FVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGY------------IQ 385
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
GD A++ F M+ + Q + I+ +++ ++ K GK +H ++ I + V
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSV 445
Query: 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
N+LIDMY +CG +
Sbjct: 446 S----------------NALIDMYAKCGEV 459
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 57/238 (23%)
Query: 54 ELCAFLGMFEKM-PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHR 112
E + L +F ++ P +NV+ W S++ ++ G + E + + +L++ +
Sbjct: 54 EPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFY------------GKLRESK 101
Query: 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172
V D Y + IK AC + D EM +E+ +L G
Sbjct: 102 VSPDKYTFPSVIK----ACAG--LFDA-------EMGDLVYEQ-------ILDMG----- 136
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232
ESDL V N+L+D Y++ L A F ++ + LVSWN++++GY+ G+ E
Sbjct: 137 -------FESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
E ALE + + + + P++ ++S VL A + K G+ +HG+ L+
Sbjct: 190 E------------ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK 235
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 30/184 (16%)
Query: 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208
S F + S+ S L + IH + L+S + L+D Y+ R + F
Sbjct: 5 VSSPFISRALSSSSNLNELRRIHALVISLG-LDSSDFFSGKLIDKYSHFREPASSLSVFR 63
Query: 209 KIK-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267
++ K++ WN+++ ++ G E ALEF+ ++ ++ + P+ +
Sbjct: 64 RVSPAKNVYLWNSIIRAFSKNGLFPE------------ALEFYGKLRESKVSPDKYTFPS 111
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
V+ ACA + ++G ++ +L G + FV N+L+DMY R G
Sbjct: 112 VIKACAGLFDAEMGDLVYEQILD----------------MGFESDLFVGNALVDMYSRMG 155
Query: 328 AIQK 331
+ +
Sbjct: 156 LLTR 159
Score = 32.7 bits (73), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 20/102 (19%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD T+ + C L LG ++H L+ G E +G
Sbjct: 507 PD--MATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSS 564
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+FE+M R+V +WT M+ Y + G E+ + F + G+
Sbjct: 565 RVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGI 606
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 174/661 (26%), Positives = 268/661 (40%), Gaps = 192/661 (29%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-----------CGVELCAFLGM----- 61
PD +T + C L LG Q+H + C V++ A GM
Sbjct: 227 PDN--ITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEAN 284
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYD 119
F M ++V SW +M+ Y+ +G +E+ V LF ++++ ++ DV
Sbjct: 285 TVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLF------------EKMQEEKIKMDVVT 332
Query: 120 YMISIK--------FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ +I +E V R +L IK + + S +++ L HGKEIH
Sbjct: 333 WSAAISGYAQRGLGYEALG-VCRQMLSSGIKPNEVTLIS---VLSGCASVGALMHGKEIH 388
Query: 172 ------PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI--KQKHLVSWNAMLA 223
P L+K+ + +V N L+D YAKC+ + A F + K++ +V+W M+
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ--PNTISLSGVLAACAQVKGFKLG 281
GY +Q+GD ALE S M + D Q PN ++S L ACA + ++G
Sbjct: 449 GY------------SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 282 KEIHGYVLRHH------------IQLSTGVG----IALISIQGLGTGSFVWNSLIDMYGR 325
K+IH Y LR+ I + G L+ + W SL+ YG
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
G ++ ++G YF MK + + P E
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAE-----PC-----NPDIAEHAARHLFEL 402
Y C+VDLL RAG+ + L +++MP EP C ++ E+AA + EL
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL 676
Query: 403 EPLSSGK-------------------------------------------VHSFIAGDTS 419
G +F GD +
Sbjct: 677 ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKT 736
Query: 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLI 462
H +I + L+ IK IGY +P G HSEKLALA+G++
Sbjct: 737 HPHAKEIYQVLLDHMQRIKDIGY---VPETGFALHDVDDEEKDDLLFEHSEKLALAYGIL 793
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
+T G+ +R+ KNLR+CGDCH+ Y+S R + +II+ D+ RFHHF +G+CSC Y
Sbjct: 794 TTPQGAAIRITKNLRVCGDCHTAFTYMS----RIIDHDIILRDSSRFHHFKNGSCSCKGY 849
Query: 523 W 523
W
Sbjct: 850 W 850
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/466 (23%), Positives = 197/466 (42%), Gaps = 87/466 (18%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
L+ S+ T PD T+ +F+ C +++++ G HA +V G F+G
Sbjct: 117 LMHSLSWT-PDN--YTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYS 173
Query: 61 ----------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------- 99
+F++M +V SW S++ Y LG + + +F + +E
Sbjct: 174 RCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLV 233
Query: 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159
V C+ L H +GK ++ + ++ + N V ++DM+ KCG M+ A+ FS
Sbjct: 234 NVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEAN-----TVFS 288
Query: 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---- 215
N+S+ D++ N+++ Y++ + A F K++++ +
Sbjct: 289 NMSV------------------KDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W+A ++GYA Q G G AL +M+ + ++PN ++L VL+ CA V
Sbjct: 331 VTWSAAISGYA------------QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASV 378
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335
GKEIH Y +++ I L G G + V N LIDMY +C +
Sbjct: 379 GALMHGKEIHCYAIKYPIDLRK---------NGHGDENMVINQLIDMYAKCKKVDTARA- 428
Query: 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHA 395
M E + + M+ ++ G + L + +M E P N A
Sbjct: 429 ----MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP-NAFTISCA 483
Query: 396 ARHLFELEPLSSGK-VHSFIAGDTSHSLVHKISEKLMRLYSEIKKI 440
L L GK +H++ + +++ +S L+ +Y++ I
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSI 529
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 21/97 (21%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV------------CGVELCAFLG--- 60
T P+ T++ AL+ C L L +G Q+HA+ + C +++ A G
Sbjct: 473 TRPNAFTISCALV--ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSIS 530
Query: 61 ----MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+F+ M +N +WTS+M Y + GY EE + +F
Sbjct: 531 DARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIF 567
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
Query: 239 QYGDGETA---LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
YGD A L F M P+ + V AC ++ + G+ H
Sbjct: 101 SYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAH---------- 150
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
AL + G + FV N+L+ MY RC ++
Sbjct: 151 ------ALSLVTGFISNVFVGNALVAMYSRCRSLS 179
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 147/503 (29%), Positives = 223/503 (44%), Gaps = 140/503 (27%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K SNLS + +IH + K E+D+ NSL++ YA K+AH F +I +
Sbjct: 123 KACSNLSAFEETTQIHAQ-ITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Query: 216 VSWNAMLAGYALGG--------FREE-----------ITGFTQYGDGETALEFFSRMIQT 256
VSWN+++ GY G FR+ I+G+ Q + AL+ F M +
Sbjct: 182 VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241
Query: 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------- 306
D++P+ +SL+ L+ACAQ+ + GK IH Y+ + I++ + +G LI +
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 307 ----QGLGTGSF-VWNSLIDMYGRCG----AIQK-------------------------- 331
+ + S W +LI Y G AI K
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 332 ---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA---- 384
EG F M+++YN++P +E Y C+VDLL RAG D+ F+++MP +P++
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 385 --EPC----NPDIAEHAARHLFELEPLSSGK----------------------------- 409
+ C N ++ E L ++P G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 410 --------------VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC------ 449
H F+AGD SH + KI K + ++++ GY+ +
Sbjct: 482 AKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVD 541
Query: 450 ---------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRERERE 500
HSEKLA+ +GLI T PG+ +R++KNLR+C DCH TK +SK K R+
Sbjct: 542 DDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYK----RD 597
Query: 501 IIMIDNYRFHHFVDGACSCGDYW 523
I+M D RFHHF DG CSCGDYW
Sbjct: 598 IVMRDRTRFHHFRDGKCSCGDYW 620
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 99/266 (37%), Gaps = 42/266 (15%)
Query: 168 KEIHPHHLKKDDLESDLLVNN--SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
K+IH LK ++ + S +L A F + WN M
Sbjct: 31 KQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLM---- 86
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
I GF+ + E +L + RM+ + N + +L AC+ + F+ +IH
Sbjct: 87 --------IRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIH 138
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCGAI 329
+ + + +LI+ + TG+F WNS+I Y + G +
Sbjct: 139 AQITKLGYENDVYAVNSLINSYAV-TGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKM 197
Query: 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNP 389
+ F M ++ + + M+ +A + L +M + S EP N
Sbjct: 198 --DIALTLFRKMAEKNAI-----SWTTMISGYVQADMNKEALQLFHEM--QNSDVEPDNV 248
Query: 390 DIAEHAARHLFELEPLSSGK-VHSFI 414
+A +A +L L GK +HS++
Sbjct: 249 SLA-NALSACAQLGALEQGKWIHSYL 273
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 162/596 (27%), Positives = 259/596 (43%), Gaps = 163/596 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEE-------IVNLFY-LLIDE----------GVY 102
+F +MP+RN FSW ++ + G+ E + LFY ++ DE V
Sbjct: 81 IFNQMPQRNCFSWNTI-----IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVL 135
Query: 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
KAC++ + GK ++ + F G+ V ++ M++ CG M+ A F + +
Sbjct: 136 KACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYK------N 189
Query: 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAML 222
+++ + K+D ++++ N ++D Y + K A F K++Q+ +VSWN M+
Sbjct: 190 IIEKDMVVMTDRRKRD---GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
+GY+L GF ++ A+E F M + D++PN ++L VL A +++ +LG+
Sbjct: 247 SGYSLNGFFKD------------AVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGE 294
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLID---MYG 324
+H Y I++ +G ALI + W+++I+ ++G
Sbjct: 295 WLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHG 354
Query: 325 RCG-AIQ-----------------------------KNEGWRYFEMMKKEYNMEPAMEQY 354
+ G AI EG RYF M +EP +E Y
Sbjct: 355 QAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHY 414
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP 404
CMVDLL R+G D+ F+ MP +P C N ++ + A L ++ P
Sbjct: 415 GCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVP 474
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
SG +H F+ D SH
Sbjct: 475 HDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHP 534
Query: 422 LVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPG 467
+I+ L+ + +++ GY K HSEK+A AFGLISTSPG
Sbjct: 535 KAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPG 594
Query: 468 SPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+R++KNLR+C DCHS K +SK K R+I + D RFHHF DG+CSC DYW
Sbjct: 595 KPIRIVKNLRICEDCHSSIKLISKVYK----RKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 30/191 (15%)
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC----RYLKVAHCKFSKIKQK 213
+N ++ +IH +K + D L ++ F A R L AH F+++ Q+
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQMR-DTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88
Query: 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
+ SWN ++ G++ + + T F+ M ++PN + VL ACA
Sbjct: 89 NCFSWNTIIRGFSESDEDKALIAITL---------FYEMMSDEFVEPNRFTFPSVLKACA 139
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
+ + GK+IHG L++ G G FV ++L+ MY CG ++
Sbjct: 140 KTGKIQEGKQIHGLALKY----------------GFGGDEFVMSNLVRMYVMCGFMKDAR 183
Query: 334 GWRYFEMMKKE 344
Y +++K+
Sbjct: 184 VLFYKNIIEKD 194
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
VT + +L +LELG +H + G+ + LG +FE+
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+P NV +W++M+ + + G + ++ F + GV
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGV 371
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 183/709 (25%), Positives = 276/709 (38%), Gaps = 213/709 (30%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-------- 60
+ +S T PD VT+ + C QVHA + G + FL
Sbjct: 136 MCRSSSCTLPDH--VTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKS 193
Query: 61 ------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------- 100
+FE++PE++ ++ +++ Y G Y E ++LF + G
Sbjct: 194 YCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTF 253
Query: 101 --VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------ 146
V KA L D +G+ ++ ++ F +A V +LD + K R+
Sbjct: 254 SGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 147 ---------------------------EMASGEFEEKDF---------SNLSLLKHGKEI 170
EM F+ ++F +NLS L+ G+++
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
H L +S L V NSL+D YAKC + A F + Q+ VSW A+++GY G
Sbjct: 374 HCQALLAT-ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGL 432
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+G G L+ F++M ++++ + + + VL A A LGK++H +++R
Sbjct: 433 ---------HGAG---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIR 480
Query: 291 HHIQLSTGVGIALISI---------------QGLGTGSFVWNSLI-------DMYGRCGA 328
+ G L+ + + + WN+LI D GA
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540
Query: 329 IQK--------------------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
K +G YF+ M Y + P + Y CM+DLL
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600
Query: 363 RAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAARHLFELEPLSSG---- 408
R G+F + M +MPFEP S C N +AE AA LF +E L
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+H F + D +H +I
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720
Query: 429 KLMRLYSEIKKIGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ L +EI++ GY MK HSE+LA+AF LIST G P+ V+K
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMK 780
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR C DCH+ K +SK K REI + D RFHHF +G CSCGDYW
Sbjct: 781 NLRACRDCHAAIKLISKIVK----REITVRDTSRFHHFSEGVCSCGDYW 825
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/368 (19%), Positives = 132/368 (35%), Gaps = 93/368 (25%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
++ P N + + H+ V + +F+ MP+R V +WT +MG Y +++
Sbjct: 70 VYDEMPHKNTVSTNTMISGHVKTGDVS--SARDLFDAMPDRTVVTWTILMGWYARNSHFD 127
Query: 88 EIVNLFY--------LLIDEGVYKA----CSELKDHRVGKDVYDYMISIKFEGNA--CVK 133
E LF L D + C++ V+ + + + F+ N V
Sbjct: 128 EAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVS 187
Query: 134 RPVLDMFIKCGRMEMASGEFEE-------------------------------------- 155
+L + + R+++A FEE
Sbjct: 188 NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQ 247
Query: 156 -KDFSNLSLLKH---------GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHC 205
DF+ +LK G+++H + D V N ++DFY+K +
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTT-GFSRDASVGNQILDFYSKHDRVLETRM 306
Query: 206 KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265
F ++ + VS+N +++ Y +Q E +L FF M
Sbjct: 307 LFDEMPELDFVSYNVVISSY------------SQADQYEASLHFFREMQCMGFDRRNFPF 354
Query: 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325
+ +L+ A + ++G+++H L L+T I V NSL+DMY +
Sbjct: 355 ATMLSIAANLSSLQMGRQLHCQAL-----LATADSIL-----------HVGNSLVDMYAK 398
Query: 326 CGAIQKNE 333
C ++ E
Sbjct: 399 CEMFEEAE 406
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 158/604 (26%), Positives = 253/604 (41%), Gaps = 166/604 (27%)
Query: 47 HLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100
H+ V ++L + FE+M ER++ +W SM+ +N GY +++F ++ +
Sbjct: 222 HMQVGQMDLA--MAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDR 279
Query: 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
V AC+ L+ +GK ++ ++++ F+ + V ++ M+ +CG +E A E+
Sbjct: 280 FTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQ 339
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
+ +L + +L+D Y K + A F +K + +
Sbjct: 340 RGTKDLKIEGF---------------------TALLDGYIKLGDMNQAKNIFVSLKDRDV 378
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+W AM+ GY Q+G A+ F M+ +PN+ +L+ +L+ + +
Sbjct: 379 VAWTAMIVGYE------------QHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSL 426
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG----------------SFVWNSL 319
GK+IHG ++ S V ALI++ + W S+
Sbjct: 427 ASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSM 486
Query: 320 IDMYGRCGAIQK---------------------------------NEGWRYFEMMKKEYN 346
I + G ++ N+G +YF+MMK
Sbjct: 487 IIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDK 546
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEP------SSAEPC----NPDIAEHAA 396
+ P + Y CMVDL RAG + F++KMP EP S C N D+ + AA
Sbjct: 547 IIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAA 606
Query: 397 RHLFELEPLSSG-------------------------------------------KVHSF 413
L LEP +SG KVH F
Sbjct: 607 ERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVF 666
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAF 459
D +H ++I + +++ EIKK+GY+ + HSEKLA+AF
Sbjct: 667 GVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAF 726
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
GLIST + LR++KNLR+C DCH+ K++SK REII+ D RFHHF DG CSC
Sbjct: 727 GLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVG----REIIVRDTTRFHHFKDGFCSC 782
Query: 520 GDYW 523
DYW
Sbjct: 783 RDYW 786
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 70/329 (21%)
Query: 56 CAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKAC 105
C F F+++P+R+ SWT+M+ Y +G Y + + + ++ EG V +
Sbjct: 100 CEF---FDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASV 156
Query: 106 SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK 165
+ + GK V+ +++ + GN V +L+M+ KCG MA F+ ++S
Sbjct: 157 AATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW- 215
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
N+++ + + + +A +F ++ ++ +V+WN+M
Sbjct: 216 ----------------------NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSM---- 249
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQPNTISLSGVLAACAQVKGFKLGKEI 284
I+GF Q G AL+ FS+M++ + P+ +L+ VL+ACA ++ +GK+I
Sbjct: 250 --------ISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI 301
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344
H ++ ++TG I+ I V N+LI MY RCG ++ ++++
Sbjct: 302 HSHI------VTTGFDISGI----------VLNALISMYSRCGGVETAR-----RLIEQR 340
Query: 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNF 373
+ +E + ++D + G + N
Sbjct: 341 GTKDLKIEGFTALLDGYIKLGDMNQAKNI 369
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 36/177 (20%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+H +K + S L+NN LM+ Y+K Y A F ++ + SWN +L+ Y+ G
Sbjct: 36 VHCRVIKSGLMFSVYLMNN-LMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRG 94
Query: 230 -------------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
+ I G+ G A+ M++ ++P +L+ VLA
Sbjct: 95 DMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLA 154
Query: 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG 327
+ A + + GK++H ++++ GL V NSL++MY +CG
Sbjct: 155 SVAATRCMETGKKVHSFIVK----------------LGLRGNVSVSNSLLNMYAKCG 195
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 174/652 (26%), Positives = 270/652 (41%), Gaps = 199/652 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGV------------------ELCAFLGMFEKM 65
TY + Q C + LE G +VH H+ G L +F++M
Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P R++ SW M+ Y +G EE LF + ++ Y + + + V KD + + +
Sbjct: 147 PNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGY-VKKDQPEEALVLY 205
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
L + R + + + + ++ GKEIH H + + L+SD +
Sbjct: 206 ----------SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH-IVRAGLDSDEV 254
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ +SLMD Y KC + A F KI +K +VSW +M+ Y E GF+
Sbjct: 255 LWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWRE--GFS------- 305
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
FS ++ + +PN + +GVL ACA + +LGK++HGY+ R
Sbjct: 306 ---LFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR--------------- 347
Query: 306 IQGLGTGSFVWNSLIDMYGRCGAI-----------------------------QKNEGWR 336
G SF +SL+DMY +CG I Q +E +
Sbjct: 348 -VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALK 406
Query: 337 YFEMMKK-----------------------------------EYNMEPAMEQYCCMVDLL 361
YF+++ K ++ + + Y C+VDLL
Sbjct: 407 YFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLL 466
Query: 362 ARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP------- 404
AR+G+F+ + + +MP +PS + N D+AE AA+ LF++EP
Sbjct: 467 ARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYV 526
Query: 405 ------LSSGK------------------------------VHSFIAGDTSHSLVHKISE 428
++GK H FIA DTSH + ++I E
Sbjct: 527 TMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVE 586
Query: 429 KLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLR 471
L L ++K+ GY +PA HSEKLA+AF ++ST G+ ++
Sbjct: 587 FLRELRKKMKEEGY---VPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 643
Query: 472 VIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
V KNLR C DCH K++S K R+I + D+ RFH F +G CSCGDYW
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITK----RKITVRDSTRFHCFENGQCSCGDYW 691
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
G+ L +++ +P + ++ C+Q + + GK++H HI+ S
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVH-----EHIRTS------ 114
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAI 329
G G +WN L+ MY +CG++
Sbjct: 115 -----GFVPGIVIWNRLLRMYAKCGSL 136
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 205 bits (521), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 160/570 (28%), Positives = 235/570 (41%), Gaps = 165/570 (28%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F + P+ N + + ++ +E+ L F+ MP RNV +W +M+ Y G
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKEL--FDVMPCRNVSTWNTMITGYAQCGKIS 360
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
E NLF D +D + I + L +F++ ME
Sbjct: 361 EAKNLF----------------DKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQ---ME 401
Query: 148 MASGEFEEKDFS-------NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL 200
G FS ++ L+ GK++H L K E+ V N+L+ Y KC +
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGR-LVKGGYETGCFVGNALLLMYCKCGSI 460
Query: 201 KVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260
+ A+ F ++ K +VSWN M+AGY+ GF GE AL FF M + ++P
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGF------------GEVALRFFESMKREGLKP 508
Query: 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320
+ ++ VL+AC+ L+
Sbjct: 509 DDATMVAVLSACSHT------------------------------------------GLV 526
Query: 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
D +G +YF M ++Y + P + Y CMVDLL RAG +D N MK MPFE
Sbjct: 527 D-----------KGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575
Query: 381 PSSA----------EPCNPDIAEHAARHLFELEPLSSG---------------------- 408
P +A N ++AE AA +F +EP +SG
Sbjct: 576 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 635
Query: 409 ---------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIP 447
K H+F GD H +I L L +KK GY+ +
Sbjct: 636 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695
Query: 448 AC--------------GHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
HSE+LA+A+G++ S G P+RVIKNLR+C DCH+ KY+++
Sbjct: 696 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARIT 755
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
R II+ DN RFHHF DG+CSCGDYW
Sbjct: 756 G----RLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 149/378 (39%), Gaps = 85/378 (22%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F+R P+ +++ + +L EL L F++MPER++ SW M+ Y
Sbjct: 86 VFKRMPRWSSVSYNGMISGYLRNGEFELARKL--FDEMPERDLVSWNVMIKGYVRNRNLG 143
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVK--RPVLDMFIKCGR 145
+ LF ++ + V CS ++ M+S + N CV R V D R
Sbjct: 144 KARELFEIMPERDV---CS-----------WNTMLS-GYAQNGCVDDARSVFD------R 182
Query: 146 MEMASGEFEEKDFSNLSLL----KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201
M E+ D S +LL ++ K L K L+ N L+ + K + +
Sbjct: 183 MP------EKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIV 236
Query: 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREE-------------------ITGFTQYGD 242
A F + + +VSWN ++ GYA G +E ++G+ Q
Sbjct: 237 EARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
E A E F +M + N +S + +LA Q + ++ KE+ + ++
Sbjct: 297 VEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS-------- 344
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
WN++I Y +CG I +E F+ M K +P + M+ +
Sbjct: 345 ------------TWNTMITGYAQCGKI--SEAKNLFDKMPKR---DPV--SWAAMIAGYS 385
Query: 363 RAGQFDDTLNFMKKMPFE 380
++G + L +M E
Sbjct: 386 QSGHSFEALRLFVQMERE 403
Score = 39.7 bits (91), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+++ C + LELG Q+H L+ G E F+G +F++M
Sbjct: 411 SFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
+++ SW +M+ Y+ G+ E + F + EG+
Sbjct: 471 AGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGL 506
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 170/638 (26%), Positives = 263/638 (41%), Gaps = 171/638 (26%)
Query: 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEK 64
VT + + ++ LG Q+H +I G E +G +F
Sbjct: 140 VTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYG 199
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKAC--SELKDHRVGKDVYDYMI 122
+ +RN + S+MG G E+ + LF + + V A L + + K+ +
Sbjct: 200 LDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFR 259
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182
+K +G + P + CG L + GK+IH + + + +
Sbjct: 260 EMKVQGLKMDQYPFGSVLPACG---------------GLGAINEGKQIHAC-IIRTNFQD 303
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
+ V ++L+D Y KC+ L A F ++KQK++VSW AM+ GY Q G
Sbjct: 304 HIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG------------QTGR 351
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV----LRHHIQLSTG 298
E A++ F M ++ + P+ +L ++ACA V + G + HG L H++ +S
Sbjct: 352 AEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS 411
Query: 299 V--------------------------------------GIALISIQ--------GLGTG 312
+ G A+ +IQ GL
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPD 471
Query: 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372
+I R G ++K G RYF++M EY + P++ Y CM+DL +R+G+ ++ +
Sbjct: 472 GVTLTGVISACSRAGLVEK--GQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMR 529
Query: 373 FMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEP--------LSS------- 407
F+ MPF P + C N +I + AA L EL+P LSS
Sbjct: 530 FINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGK 589
Query: 408 ----------------------------GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439
GK+HSF A D S + +I KL L ++I
Sbjct: 590 WDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIID 649
Query: 440 IGY--------------MKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSP 485
GY +K HSE+LA+AFGLI G P+RV KNLR+C DCH+
Sbjct: 650 NGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNA 709
Query: 486 TKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
TK++S REI++ D RFH F DG CSCGD+W
Sbjct: 710 TKHISSVTG----REILVRDAVRFHRFKDGTCSCGDFW 743
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 47/256 (18%)
Query: 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSELKD 110
FEK+P+R+ +W ++ Y++ G V + ++ + + K S
Sbjct: 95 FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170
+GK ++ +I + FE V P+L M+ G + A F D
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLD------------- 201
Query: 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF 230
+ + ++ NSLM C ++ A F + +K VSW AM+ G A G
Sbjct: 202 ----------DRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGL 250
Query: 231 REEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290
+E A+E F M ++ + VL AC + GK+IH ++R
Sbjct: 251 AKE------------AIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR 298
Query: 291 HHIQLSTGVGIALISI 306
+ Q VG ALI +
Sbjct: 299 TNFQDHIYVGSALIDM 314
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 67/166 (40%), Gaps = 39/166 (23%)
Query: 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--------ELCAFLG-------- 60
+PD T+ A+ C +++LE G Q H I G+ L G
Sbjct: 368 DPDHYTLGQAI--SACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 61 --MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSEL 108
+F +M R+ SWT+M+ Y G E + LF ++ GV ACS
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485
Query: 109 KDHRVGKDVYDYMIS----IKFEGN-ACVKRPVLDMFIKCGRMEMA 149
G+ + M S + G+ +C ++D+F + GR+E A
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSC----MIDLFSRSGRLEEA 527
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ +L N+L+ Y+K + F K+ + V+WN ++ GY+L G + G
Sbjct: 69 QPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSG----LVG---- 120
Query: 241 GDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
A++ ++ M++ D N ++L +L + LGK+IHG V++ +
Sbjct: 121 ----AAVKAYNTMMR-DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLL 175
Query: 299 VGIALISI--------------QGLGT-GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
VG L+ + GL + ++NSL+ CG I+ + + F M+K
Sbjct: 176 VGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIE--DALQLFRGMEK 233
Query: 344 EYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + M+ LA+ G + + ++M +
Sbjct: 234 D------SVSWAAMIKGLAQNGLAKEAIECFREMKVQ 264
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 164/633 (25%), Positives = 262/633 (41%), Gaps = 186/633 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL--IDE----GVYKACSELKDHRVG 114
+F++MP R++ SW +M+ Y G +E + L L +D + AC+E D G
Sbjct: 207 LFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRG 266
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--------------------MASGEFE 154
++ Y I E V ++D++ + GR+ + + E
Sbjct: 267 VTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELN 326
Query: 155 EKDFSNLSLLKHGK--EIHPHHLKKDDLES--------------------------DLLV 186
E+ +SL + + I P L L S D+ +
Sbjct: 327 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITI 386
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
N+++ YAK + A F+ + ++SWN +++GYA GF E A
Sbjct: 387 GNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE------------A 434
Query: 247 LEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305
+E ++ M + ++ N + VL AC+Q + G ++HG +L++ + L V +L
Sbjct: 435 IEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLAD 494
Query: 306 IQGL---------------GTGSFVWNSLIDMYGRCGAIQK------------------- 331
+ G S WN+LI +G G +K
Sbjct: 495 MYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHIT 554
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+EG FEMM+ +Y + P+++ Y CMVD+ RAGQ + L F+K M
Sbjct: 555 FVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSM 614
Query: 378 PFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------- 408
+P ++ C N D+ + A+ HLFE+EP G
Sbjct: 615 SLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVD 674
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
KV F G+ +H + ++ +L L +++K IGY+
Sbjct: 675 EIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVP 734
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSE+LA+AF LI+T + +R+ KNLR+CGDCHS TK++S
Sbjct: 735 DHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFIS 794
Query: 491 KAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
K EREII+ D+ RFHHF +G CSCGDYW
Sbjct: 795 KIT----EREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 43/227 (18%)
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLK---- 165
DH +DVY + + I G A V I+C + M S + S+LK
Sbjct: 110 DHIQNRDVYAWNLMISGYGRAGNSSEV----IRCFSLFMLSSGLTPDYRTFPSVLKACRT 165
Query: 166 --HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
G +IH LK + D+ V SL+ Y++ + + A F ++ + + SWNAM++
Sbjct: 166 VIDGNKIHCLALKFGFMW-DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GY Q G+ + AL + + D ++++ +L+AC + F G
Sbjct: 225 GYC------------QSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFNRGVT 268
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
IH Y ++H GL + FV N LID+Y G ++
Sbjct: 269 IHSYSIKH----------------GLESELFVSNKLIDLYAEFGRLR 299
Score = 39.7 bits (91), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 37/159 (23%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAF------------------LGMFEKM 65
T+ + C + L G+++H L+ G+ L F L +F ++
Sbjct: 453 TWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQI 512
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
P N W +++ + G+ E+ V LF ++DEGV ACS G+
Sbjct: 513 PRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQ 572
Query: 116 DVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ DY I+ + C ++DM+ + G++E A
Sbjct: 573 WCFEMMQTDYGITPSLKHYGC----MVDMYGRAGQLETA 607
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ K +H + ++ ++ ++ L++ Y + +A F I+ + + +WN M++
Sbjct: 67 LQSAKCLHARLVVSKQIQ-NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSR-MIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
GY G E+ + FS M+ + + P+ + VL AC V G
Sbjct: 126 GYGRAGNSSEV------------IRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GN 170
Query: 283 EIHGYVLRHHIQLSTGVGIALISI----QGLGTGSFV-----------WNSLIDMYGRCG 327
+IH L+ V +LI + + +G + WN++I Y + G
Sbjct: 171 KIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 230
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 165/634 (26%), Positives = 270/634 (42%), Gaps = 195/634 (30%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVE---------LCAFLG---------MFEKM 65
T+ L+ + C + ++ +LGI +H+ ++ CG L + G +F+++
Sbjct: 113 TFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEI 172
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+R+V +WT++ Y G + E ++LF +++ GV D Y +++ +
Sbjct: 173 PDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGV------------KPDSY-FIVQVL 219
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
+ACV LD SGE+ ++K+ +E+ +++ +
Sbjct: 220 ---SACVHVGDLD-----------SGEW---------IVKYMEEM--------EMQKNSF 248
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
V +L++ YAKC ++ A F + +K +V+W+ M+ GYA F +E
Sbjct: 249 VRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE------------ 296
Query: 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI- 304
+E F +M+Q +++P+ S+ G L++CA + LG+ + RH + + ALI
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALID 356
Query: 305 ----------------------------SIQGLGTGSFVWNSLIDMYGR----------- 325
+I GL V S ++G+
Sbjct: 357 MYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFA-VFGQTEKLGISPDGS 415
Query: 326 ------CGAIQK---NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376
CG + +G R+F + Y ++ +E Y CMVDL RAG DD +
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475
Query: 377 MPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG------------------ 408
MP P++ C + +AE + L LEP ++G
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535
Query: 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443
KVH F+A D SH L KI KL L +E++ +G++
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595
Query: 444 --------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYV 489
K HSEKLA+A GLIST G +RV+KNLR+CGDCH K +
Sbjct: 596 PTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655
Query: 490 SKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SK + REI++ DN RFH F +G+CSC DYW
Sbjct: 656 SKITR----REIVVRDNNRFHCFTNGSCSCNDYW 685
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 21/147 (14%)
Query: 164 LKHGKEIH----PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
+ H K+IH HHL D +LL+ +L K YL +H +F I +N
Sbjct: 26 VNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNI-----FLYN 80
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
+++ G+ E L+ F + + + + + VL AC + K
Sbjct: 81 SLINGFVNNHLFHE------------TLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRK 128
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISI 306
LG ++H V++ +L+SI
Sbjct: 129 LGIDLHSLVVKCGFNHDVAAMTSLLSI 155
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 199 bits (507), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 172/664 (25%), Positives = 277/664 (41%), Gaps = 179/664 (26%)
Query: 16 TNPDE---------CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA---FLGMFE 63
+PDE C T +L L L +V A L+ C L + L +F
Sbjct: 25 ASPDESHFISLIHACKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSPDYSLSIFR 84
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRV 113
ERN F +++ +E V F L++ GV K+ S+L +
Sbjct: 85 NSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWL 144
Query: 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173
G+ ++ + + ++ V+ ++DM+ K G+++ A FEE P
Sbjct: 145 GRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEES---------------PD 189
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG---- 229
+KK+ + L+ N L++ Y + + + +A F + +++ SW+ ++ GY G
Sbjct: 190 RIKKESI----LIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNR 245
Query: 230 ---------------FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274
+ I GF+Q GD ETA+ + M++ ++PN +++ VL+AC++
Sbjct: 246 AKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSK 305
Query: 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFV-----------WNSL 319
G IHGY+L + I+L +G AL+ + L + V W ++
Sbjct: 306 SGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAM 365
Query: 320 IDMYGRCG----AIQ-----------------------------KNEGWRYFEMMKKEYN 346
I + G AIQ + G +F+ M+ +Y
Sbjct: 366 IQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYA 425
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPCNP----DIAEHAA 396
+EP ++ Y +VDLL RAG+ ++ ++ MP P C AE +
Sbjct: 426 IEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVS 485
Query: 397 RHLFELEP--------------------------LS-----------------SGKVHSF 413
++L EL+P LS G+++ F
Sbjct: 486 QNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKF 545
Query: 414 IAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAF 459
AGD SH L +I KL + S + GY K HSEKLAL
Sbjct: 546 SAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTL 605
Query: 460 GLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSC 519
G + T+PG+ +R+IKNLR+CGDCHS KYVSK +R+I++ D +FHHF DG CSC
Sbjct: 606 GFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKIS----QRDILLRDARQFHHFKDGRCSC 661
Query: 520 GDYW 523
GDYW
Sbjct: 662 GDYW 665
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 197 bits (502), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 155/591 (26%), Positives = 250/591 (42%), Gaps = 206/591 (34%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GVYKACSELKD 110
+F++MP+RNV SWT+M+ Y+ +++ + L L++ + V ++C+ + D
Sbjct: 118 LFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSD 177
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE--------------- 155
R+ ++ +I E + V+ ++D+F K G E A F+E
Sbjct: 178 VRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGG 234
Query: 156 ---------------------------------KDFSNLSLLKHGKEIHPHHLKKDDLES 182
+ + L+LL+ G + H H +K D
Sbjct: 235 FAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYD---Q 291
Query: 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGD 242
DL++NN+L+D Y KC L+ A F+++K++ +++W+ M++G A G+ +E
Sbjct: 292 DLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQE--------- 342
Query: 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
AL+ F RM + +PN I++ GVL AC+ H L
Sbjct: 343 ---ALKLFERMKSSGTKPNYITIVGVLFACS------------------HAGL------- 374
Query: 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362
L G + + S+ +YG ++P E Y CM+DLL
Sbjct: 375 ------LEDGWYYFRSMKKLYG----------------------IDPVREHYGCMIDLLG 406
Query: 363 RAGQFDDTLNFMKKMPFEPSSAE------PC----NPDIAEHAARHLFELEPLSSG---- 408
+AG+ DD + + +M EP + C N +AE+AA+ + L+P +G
Sbjct: 407 KAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTL 466
Query: 409 ---------------------------------------KVHSFIAGDTSHSLVHKISEK 429
++H+FI GD SH + ++S+K
Sbjct: 467 LSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKK 526
Query: 430 LMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLISTSPGSPLRV 472
L +L + IGY +P HSEKLALAFGL++ +R+
Sbjct: 527 LNQLIHRLTGIGY---VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583
Query: 473 IKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
KNLR+CGDCH K SK E R I++ D R+HHF DG CSCGDYW
Sbjct: 584 RKNLRICGDCHVFCKLASKLEI----RSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
N L++ Y K L AH F ++ Q++++SW M++ Y+ ++ AL
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK------------AL 147
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E M++ +++PN + S VL +C + ++ +H +++ +
Sbjct: 148 ELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIK----------------E 188
Query: 308 GLGTGSFVWNSLIDMYGRCG 327
GL + FV ++LID++ + G
Sbjct: 189 GLESDVFVRSALIDVFAKLG 208
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV-----------------CGVELCAFLGMFEKMP 66
T + + C L LELG+Q H H++ CG L L +F +M
Sbjct: 262 TLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCG-SLEDALRVFNQMK 320
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101
ER+V +W++M+ GY +E + LF + G
Sbjct: 321 ERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT 355
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 187/698 (26%), Positives = 281/698 (40%), Gaps = 219/698 (31%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-----CAFLGM----------- 61
PD T+ + + C + +L G +VH H++ G EL A + M
Sbjct: 194 PD--VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251
Query: 62 --FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY----------LLIDEGVYKACSELK 109
F++MP R++ SW +M+ Y G E + LF+ L+ V AC L
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDF-------- 158
D R+G+D++ Y+I+ F + V + M++ G A F E KD
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371
Query: 159 -------------------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
+ L L G E+H +K L
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR-LI 430
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
S ++V N+L++ Y+KC+ + A F I +K+++SW +++AG L E
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFE-------- 482
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS----- 296
AL F +M T +QPN I+L+ LAACA++ GKEIH +VLR + L
Sbjct: 483 ----ALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPN 537
Query: 297 --------------------------TGVGIALISIQGLGTGSFVWNSLIDMYGR----- 325
T I L G GS V ++++ R
Sbjct: 538 ALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSERGQGSMV----VELFDRMVKSR 593
Query: 326 ------------CGAIQKN---EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370
CG + +G YF M+ +Y + P ++ Y C+VDLL RAG+ +
Sbjct: 594 VRPDEITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEA 652
Query: 371 LNFMKKMPFEPSSA------EPCNP----DIAEHAARHLFELEPLS-------------- 406
F++KMP P A C D+ E +A+H+FEL+ S
Sbjct: 653 HKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADC 712
Query: 407 -----------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEI 437
GKVH+F++ D H +I+ L Y ++
Sbjct: 713 GKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKM 772
Query: 438 KKIGYMKRIPA--------------CGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCH 483
++G K + CGHSE+ A+AFGLI+T PG P+ V KNL MC +CH
Sbjct: 773 SEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCH 832
Query: 484 SPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521
K++SK + REI + D FHHF DG CSCGD
Sbjct: 833 DTVKFISKTVR----REISVRDAEHFHHFKDGECSCGD 866
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 88/330 (26%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELK 109
+F KM ERN+FSW ++G Y GY++E + L++ ++ G V + C +
Sbjct: 151 VFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIP 210
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------------MAS 150
D GK+V+ +++ +E + V ++ M++KCG ++ M S
Sbjct: 211 DLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMIS 270
Query: 151 GEFE-------------------EKDFSNLSLL----------KHGKEIHPHHLKKDDLE 181
G FE + D L+ + + G++IH + +
Sbjct: 271 GYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITT-GFA 329
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
D+ V NSL Y + A FS++++K +VSW M++GY ++
Sbjct: 330 VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDK-------- 381
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A++ + M Q ++P+ I+++ VL+ACA + G E+H ++
Sbjct: 382 ----AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKAR--------- 428
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
LIS V N+LI+MY +C I K
Sbjct: 429 -LISY------VIVANNLINMYSKCKCIDK 451
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 29/146 (19%)
Query: 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245
+ N+ + + + L A F K+ +++L SWN ++ GYA G+ +E
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDE------------ 178
Query: 246 ALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
A+ + RM+ ++P+ + VL C + GKE+H +V+R+ +L V
Sbjct: 179 AMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVV---- 234
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAIQ 330
N+LI MY +CG ++
Sbjct: 235 ------------NALITMYVKCGDVK 248
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 195 bits (496), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 174/696 (25%), Positives = 281/696 (40%), Gaps = 215/696 (30%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLI----VCGVELCAFL--------------GMFE 63
T TY + + +++LE G ++HA +I V V +C L +FE
Sbjct: 130 TFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFE 189
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRV 113
+MPER++ SW SM+ Y LG + LF ++ G ACS + ++
Sbjct: 190 EMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKM 249
Query: 114 GKDVYDYMISIKFE-GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL----------- 161
GK+++ + + + E G+ V +LDM+ K G + A F N+
Sbjct: 250 GKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309
Query: 162 ----------------------------------SLLKHGKEIHPHHLKKDDLESDLLVN 187
S + G+ IH + +++ L +++
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGFLP-HMVLE 368
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
+L+D Y +C LK A F ++ +K+++SWN+++A Y Q G +AL
Sbjct: 369 TALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAY------------VQNGKNYSAL 416
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
E F + + + P++ +++ +L A A+ G+EIH Y+++ +T + +L+ +
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMY 476
Query: 308 G---------------LGTGSFVWNSLIDMY-----GRCGA----------IQKN----- 332
L WNS+I Y GR + N
Sbjct: 477 AMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFA 536
Query: 333 -------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
EGW YFE MK+EY ++P +E Y CM+DL+ R G F F+++MPF
Sbjct: 537 SLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPF 596
Query: 380 EPSS--------AEPCNPD--IAEHAARHLFELEPLSS---------------------- 407
P++ A + D IAE AA +F++E ++
Sbjct: 597 VPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRI 656
Query: 408 ---------------------GKVHSFIAGDTSHSLVHKISEKL---------------- 430
GK H F GD SH +KI E L
Sbjct: 657 KLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHC 716
Query: 431 ---MRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
+R + +K R HS +LA FGLIST G + V N R+C CH +
Sbjct: 717 VSRLRPETLVKSRSNSPR----RHSVRLATCFGLISTETGRRVTVRNNTRICRKCH---E 769
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
++ KA + R REI++ D+ FHHF +G CSCG+YW
Sbjct: 770 FLEKASRLTR-REIVVGDSKIFHHFSNGRCSCGNYW 804
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 133/338 (39%), Gaps = 99/338 (29%)
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
L +F++M + + F W M+ + G Y E V + ++ G V K+ + +
Sbjct: 84 LQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGI 143
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------------- 155
GK ++ +I + F + V ++ +++K G A FEE
Sbjct: 144 SSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMI 203
Query: 156 -------KDFSNLSLLKH----------------------------GKEIHPHHLKKDDL 180
FS+L L K GKEIH H ++
Sbjct: 204 SGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIE 263
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
D++V S++D Y+K + A F+ + Q+++V+WN M+ YA G +T
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNG---RVT----- 315
Query: 241 GDGETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH----HIQL 295
A F +M Q +QP+ I+ +L A A ++ G+ IHGY +R H+ L
Sbjct: 316 ----DAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVL 367
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
T +LIDMYG CG ++ E
Sbjct: 368 ET--------------------ALIDMYGECGQLKSAE 385
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 43/256 (16%)
Query: 194 YAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253
+A R ++ A F ++ + WN M I GFT G A++F+SRM
Sbjct: 74 FADSRLMEDALQLFDEMNKADAFLWNVM------------IKGFTSCGLYIEAVQFYSRM 121
Query: 254 IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313
+ ++ +T + V+ + A + + GK+IH V++ G +
Sbjct: 122 VFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIK----------------LGFVSDV 165
Query: 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD-LLARAGQFDDTLN 372
+V NSLI +Y + G E + FE M E + + M+ LA F +
Sbjct: 166 YVCNSLISLYMKLGCAWDAE--KVFEEMP-----ERDIVSWNSMISGYLALGDGFSSLML 218
Query: 373 F--MKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKL 430
F M K F+P + A A H++ P ++H + + +
Sbjct: 219 FKEMLKCGFKPDRFSTMS---ALGACSHVY--SPKMGKEIHCHAVRSRIETGDVMVMTSI 273
Query: 431 MRLYSEIKKIGYMKRI 446
+ +YS+ ++ Y +RI
Sbjct: 274 LDMYSKYGEVSYAERI 289
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 173/649 (26%), Positives = 254/649 (39%), Gaps = 215/649 (33%)
Query: 18 PDECTVTYAL-IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMF-------------- 62
PD+ T+T L P+ L L QVH H I +F+
Sbjct: 414 PDQYTMTSVLKAASSLPE--GLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA 471
Query: 63 EKMPERNVF---SWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELK 109
E + ER+ F +W +MM Y + + LF L+ +G V+K C L
Sbjct: 472 EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---------------- 153
GK V+ Y I ++ + V +LDM++KCG M A F
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591
Query: 154 -------EEKDF-------------------------SNLSLLKHGKEIHPHHLKKDDLE 181
EE+ F S L+ L+ G++IH + LK +
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN-CT 650
Query: 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+D V SL+D YAKC + A+C F +I+ ++ +WNAML G A Q+G
Sbjct: 651 NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLA------------QHG 698
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+G+ L+ F +M ++P+ ++ GVL+AC+
Sbjct: 699 EGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS-------------------------- 732
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
G S + + M+G G ++P +E Y C+ D L
Sbjct: 733 --------GLVSEAYKHMRSMHGDYG-------------------IKPEIEHYSCLADAL 765
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG--- 408
RAG N ++ M E S++ C + + + A L ELEPL S
Sbjct: 766 GRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 825
Query: 409 ----------------------------------------KVHSFIAGDTSHSLVHKISE 428
K+H F+ D S+ I
Sbjct: 826 LLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYR 885
Query: 429 KLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIK 474
K+ + +IK+ GY+ K HSEKLA+AFGL+ST P +P+RVIK
Sbjct: 886 KVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIK 945
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+CGDCH+ KY++K REI++ D RFH F DG CSCGDYW
Sbjct: 946 NLRVCGDCHNAMKYIAKV----YNREIVLRDANRFHRFKDGICSCGDYW 990
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/443 (22%), Positives = 171/443 (38%), Gaps = 116/443 (26%)
Query: 14 DLTNPD-EC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------- 60
D+ D EC VT+ L+ K+++L LG QVH + G++L +
Sbjct: 305 DMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLR 364
Query: 61 -------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYK 103
+F+ M ER++ SW S++ G E V LF L+ G V K
Sbjct: 365 KFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLK 424
Query: 104 ACSELKDH-RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE------- 155
A S L + + K V+ + I I ++ V ++D + + M+ A FE
Sbjct: 425 AASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLVA 484
Query: 156 -------------------------------KDFSNLSLLK---------HGKEIHPHHL 175
DF+ ++ K GK++H + +
Sbjct: 485 WNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAI 544
Query: 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
K + DL V++ ++D Y KC + A F I V+W M I+
Sbjct: 545 KS-GYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTM------------IS 591
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
G + G+ E A FS+M + P+ +++ + A + + + G++IH L+ +
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCT- 650
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG-WRYFEMMKKEYNMEPAMEQY 354
FV SL+DMY +CG+I ++ EMM + +
Sbjct: 651 ---------------NDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN--------ITAW 687
Query: 355 CCMVDLLARAGQFDDTLNFMKKM 377
M+ LA+ G+ +TL K+M
Sbjct: 688 NAMLVGLAQHGEGKETLQLFKQM 710
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 132/303 (43%), Gaps = 62/303 (20%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNL---------------FYLLI-------D 98
+FE+MP R+V W M+ Y +G+ EE ++L LL D
Sbjct: 202 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSD 261
Query: 99 EGVYKACSELKDHRV-------GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151
G K+ + D K + +Y+ S ++ +++ ++C ++
Sbjct: 262 AGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILM 321
Query: 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211
+L+L G+++H LK L+ L V+NSL++ Y K R A F +
Sbjct: 322 LATAVKVDSLAL---GQQVHCMALKLG-LDLMLTVSNSLINMYCKLRKFGFARTVFDNMS 377
Query: 212 QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA 271
++ L+SWN+++AG A G E A+ F ++++ ++P+ +++ VL A
Sbjct: 378 ERDLISWNSVIAGIAQNGLEVE------------AVCLFMQLLRCGLKPDQYTMTSVLKA 425
Query: 272 CAQV-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330
+ + +G L K++H H I+++ + SFV +LID Y R ++
Sbjct: 426 ASSLPEGLSLSKQVH----VHAIKINN------------VSDSFVSTALIDAYSRNRCMK 469
Query: 331 KNE 333
+ E
Sbjct: 470 EAE 472
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
GK H L ++ L+NN L+ Y+KC L A F K+ + LVSWN++LA YA
Sbjct: 58 GKCTHARILTFEENPERFLINN-LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116
Query: 227 LGG--FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284
E I + A F + Q + + ++LS +L C +
Sbjct: 117 QSSECVVENI---------QQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESF 167
Query: 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341
HGY + GL FV +L+++Y + G ++ EG FE M
Sbjct: 168 HGYACK----------------IGLDGDEFVAGALVNIYLKFGKVK--EGKVLFEEM 206
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 77/278 (27%)
Query: 20 ECTVTYALIFQRCPK---LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76
+CT L F+ P+ +NNL I +++ CG L +F+KMP+R++ SW S+
Sbjct: 59 KCTHARILTFEENPERFLINNL---ISMYSK---CG-SLTYARRVFDKMPDRDLVSWNSI 111
Query: 77 MGMYN-----VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC 131
+ Y V+ ++ LF +L + VY + L
Sbjct: 112 LAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLS---------------------- 149
Query: 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191
P+L + + G + AS F HG + K L+ D V +L+
Sbjct: 150 ---PMLKLCLHSGYV-WASESF------------HG------YACKIGLDGDEFVAGALV 187
Query: 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251
+ Y K +K F ++ + +V WN ML Y GF+EE A++ S
Sbjct: 188 NIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEE------------AIDLSS 235
Query: 252 RMIQTDMQPNTISL------SGVLAACAQVKGFKLGKE 283
+ + PN I+L SG + QVK F G +
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGND 273
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 181/733 (24%), Positives = 286/733 (39%), Gaps = 224/733 (30%)
Query: 6 VTLLLQSMDL-TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV----------- 53
+ L L+ M+ +PD+ T + L C K GIQ+H ++ G
Sbjct: 119 ILLFLRMMNSGISPDKYTFPFGL--SACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLV 176
Query: 54 -------ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI-DEGV---- 101
EL + +F++M ERNV SWTSM+ Y + ++ V+LF+ ++ DE V
Sbjct: 177 HFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNS 236
Query: 102 ------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155
AC++L+D G+ VY ++ + E N + ++DM++KC +++A F+E
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296
Query: 156 KDFSNLSLLKH------------------------------------------------G 167
SNL L G
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG 356
Query: 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYAL 227
K H + L+ + ES + N+L+D Y KC A F ++ K +V+WN+++AGY
Sbjct: 357 KSCHGYVLR-NGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415
Query: 228 GG-------------------FREEITGFTQYGDGETALEFFSRM-IQTDMQPNTISLSG 267
G + I+G Q E A+E F M Q + + +++
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475
Query: 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI--------------------- 306
+ +AC + L K I+ Y+ ++ IQL +G L+ +
Sbjct: 476 IASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535
Query: 307 -----------------------------QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
QGL + + G +Q +G
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQ--QGKEI 593
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC---- 387
F M K + + P Y CMVDLL RAG ++ + ++ MP EP+ C
Sbjct: 594 FYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653
Query: 388 NPDIAEHAARHLFELEP--------LSS-------------------------------- 407
N ++A +AA + L P LS+
Sbjct: 654 NVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSI 713
Query: 408 ---GKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------G 450
GK H F +GD SH + I L + +G++ +
Sbjct: 714 QIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSR 773
Query: 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFH 510
HSEKLA+A+GLIS++ G+ +R++KNLR+C DCHS K+ SK REII+ DN RFH
Sbjct: 774 HSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKV----YNREIILRDNNRFH 829
Query: 511 HFVDGACSCGDYW 523
+ G CSCGD+W
Sbjct: 830 YIRQGKCSCGDFW 842
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277
+N+++ GYA G E A+ F RM+ + + P+ + L+ACA+ +
Sbjct: 102 YNSLIRGYASSGLCNE------------AILLFLRMMNSGISPDKYTFPFGLSACAKSRA 149
Query: 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337
G +IHG +++ G FV NSL+ Y CG + + +
Sbjct: 150 KGNGIQIHGLIVK----------------MGYAKDLFVQNSLVHFYAECGEL--DSARKV 191
Query: 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAA- 396
F+ M E + + M+ AR D ++ +M + E P+
Sbjct: 192 FDEMS-----ERNVVSWTSMICGYARRDFAKDAVDLFFRMVRD----EEVTPNSVTMVCV 242
Query: 397 -RHLFELEPLSSG-KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446
+LE L +G KV++FI ++ + + L+ +Y + I KR+
Sbjct: 243 ISACAKLEDLETGEKVYAFIR-NSGIEVNDLMVSALVDMYMKCNAIDVAKRL 293
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 165/642 (25%), Positives = 257/642 (40%), Gaps = 214/642 (33%)
Query: 25 YALIFQRCPKLNNLELGIQVHAHL--------IVCGVEL------CAFL----GMFEKMP 66
Y + ++C L G VHAH+ IV G L C L +FEKMP
Sbjct: 63 YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122
Query: 67 ERNVFSWTSMMGMY-------NVLGYYEEIVNLFYL---LIDEGVYKACSELKDHRVGKD 116
+R+ +WT+++ Y + L ++ +++ Y V KA + + G
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182
Query: 117 VYDYMISIKFEGNACVKRPVLDMFIKCGRME----------------------------- 147
++ + + F+ N V +LD++ + G M+
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242
Query: 148 ----------MASGEFEEKDFSNLSL---------LKHGKEIHPHHLKKDDLESDLLVNN 188
M F FS SL L+ GK +H + +K + + N
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE-KLVAFAGN 301
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
+L+D YAK + A F ++ ++ +VSWN++L YA Q+G G+ A+
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYA------------QHGFGKEAVW 349
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
+F M + ++PN IS VL AC+
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSH---------------------------------- 375
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
+ L+D EGW Y+E+MKK+ + P Y +VDLL RAG +
Sbjct: 376 --------SGLLD-----------EGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLN 415
Query: 369 DTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSG---------- 408
L F+++MP EP++A C N ++ +AA H+FEL+P G
Sbjct: 416 RALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYA 475
Query: 409 ---------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYS 435
+H F+A D H +I+ K + +
Sbjct: 476 SGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLA 535
Query: 436 EIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGD 481
+IK++GY+ + + HSEK+ALAF L++T PGS + + KN+R+CGD
Sbjct: 536 KIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGD 595
Query: 482 CHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
CH+ K SK REII+ D RFHHF DG CSC DYW
Sbjct: 596 CHTAIKLASKVVG----REIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 18/88 (20%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
+YA +F C LE G VHA++I G +L AF G +F+++
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRL 323
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF 93
+R+V SW S++ Y G+ +E V F
Sbjct: 324 AKRDVVSWNSLLTAYAQHGFGKEAVWWF 351
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/489 (28%), Positives = 212/489 (43%), Gaps = 137/489 (28%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F K + ++ ++ G+ IH ++ S + V NSL+ YA C + A+ F K+ +
Sbjct: 126 FLIKAVTTMADVRLGETIHSVVIR-SGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPE 184
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K LV+WN++ I GF + G E AL ++ M ++P+ ++ +L+AC
Sbjct: 185 KDLVAWNSV------------INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSAC 232
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI---------------QGLGTGSFVWN 317
A++ LGK +H Y+++ + + L+ + + + S W
Sbjct: 233 AKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWT 292
Query: 318 SLI-----DMYGR-------------------------------CGAIQKNEGWRYFEMM 341
SLI + +G+ CG ++ EG+ YF M
Sbjct: 293 SLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVK--EGFEYFRRM 350
Query: 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDI 391
++EY +EP +E + CMVDLLARAGQ ++K MP +P+ C + D+
Sbjct: 351 REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDL 410
Query: 392 AEHAARHLFELEPLSSG------------------------------------------- 408
AE A + +LEP SG
Sbjct: 411 AEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGN 470
Query: 409 KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI--------------PACGHSEK 454
+VH F+ GD SH I KL + ++ GY+ +I HSEK
Sbjct: 471 RVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEK 530
Query: 455 LALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVD 514
+A+AF LIST SP+ V+KNLR+C DCH K VSK REI++ D RFHHF +
Sbjct: 531 IAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV----YNREIVVRDRSRFHHFKN 586
Query: 515 GACSCGDYW 523
G+CSC DYW
Sbjct: 587 GSCSCQDYW 595
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 192 bits (487), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 163/634 (25%), Positives = 252/634 (39%), Gaps = 187/634 (29%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL------IDEG----VYKACSELKD 110
+F+K ++V +W SM+ Y G E + +FY + + E V K C+ LK+
Sbjct: 251 LFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKE 310
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM------------------------ 146
R + ++ ++ F + ++ ++ + KC M
Sbjct: 311 LRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMIS 370
Query: 147 ----------------EMASGEFEEKDFSNLSLLKHGKEIHPH----HLKKDDLESDLLV 186
EM +F+ +L I P + K + E V
Sbjct: 371 GFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV 430
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+L+D Y K ++ A FS I K +V+W+AMLAGYA Q G+ E A
Sbjct: 431 GTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYA------------QTGETEAA 478
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKG-FKLGKEIHGYVLRHHIQLSTGVGIALIS 305
++ F + + ++PN + S +L CA GK+ HG+ ++ + S V AL++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 306 IQG----LGTGSFV-----------WNSLIDMYGRCGAIQK------------------- 331
+ + + V WNS+I Y + G K
Sbjct: 539 MYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVT 598
Query: 332 --------------NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
EG +YF++M ++ + P E CMVDL +RAGQ + + ++ M
Sbjct: 599 FIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENM 658
Query: 378 PFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG------------------- 408
P S C ++ AA + ++P S
Sbjct: 659 PNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERA 718
Query: 409 ------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM- 443
K +SF+AGD SH L +I KL L + +K +GY
Sbjct: 719 KVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEP 778
Query: 444 -------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVS 490
K HSE+LA+AFGLI+T GSPL +IKNLR+CGDCH K ++
Sbjct: 779 DTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIA 838
Query: 491 KAEKREREREIIMIDNYRFHHF-VDGACSCGDYW 523
K E EREI++ D+ RFHHF DG CSCGD+W
Sbjct: 839 KIE----EREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 56/244 (22%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F++M ERNV +WT+++ Y +E++ LF + +EG
Sbjct: 150 VFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPN---------------- 193
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180
S F A G E+ L H + K+ L
Sbjct: 194 --SFTFAA--------------------ALGVLAEEGVGGRGLQVHTVVV------KNGL 225
Query: 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240
+ + V+NSL++ Y KC ++ A F K + K +V+WN+M++GYA G E
Sbjct: 226 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE------- 278
Query: 241 GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300
AL F M ++ + S + V+ CA +K + +++H V+++ +
Sbjct: 279 -----ALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 301 IALI 304
AL+
Sbjct: 334 TALM 337
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 29/165 (17%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G+++H +K L+ D+ V SL+D Y K K F ++K++++V+W +++GYA
Sbjct: 112 GRQLHCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYA 170
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
+E+ L F RM QPN+ + + L A+ G ++H
Sbjct: 171 RNSMNDEV------------LTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331
V+++ GL V NSLI++Y +CG ++K
Sbjct: 219 VVVKN----------------GLDKTIPVSNSLINLYLKCGNVRK 247
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 215/478 (44%), Gaps = 133/478 (27%)
Query: 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNA 220
LS G+ +H +K ++D+ V +SL+D YAKC + A F ++ Q+++V+W+
Sbjct: 129 LSRCDIGRSVHCLSMKTG-YDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSG 187
Query: 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280
M+ GYA Q G+ E AL F + ++ N S S V++ CA +L
Sbjct: 188 MMYGYA------------QMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLEL 235
Query: 281 GKEIHGYVLRHHIQLSTGVGIALISIQ---GLGTGSF------------VWNSLIDMYGR 325
G++IHG ++ S+ VG +L+S+ G+ G++ +WN+++ Y +
Sbjct: 236 GRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQ 295
Query: 326 CGAIQK---------------------------------NEGWRYFEMMKKEYNMEPAME 352
QK +EG YF+ MK E +EP +
Sbjct: 296 HSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMK-ESRIEPTDK 354
Query: 353 QYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFEL 402
Y +VD+L RAG+ + L + MP +P+ + C N ++A AA +FEL
Sbjct: 355 HYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFEL 414
Query: 403 EPLSSG-------------------------------------------KVHSFIAGDTS 419
P+SSG KVH+F AG+
Sbjct: 415 GPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERR 474
Query: 420 HSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTS 465
H +I EKL L E++K GY+ K HSE+LA+AFGLI+
Sbjct: 475 HEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFP 534
Query: 466 PGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV+KNLR+CGDCH+ K++S + R II+ DN RFH F DG CSC DYW
Sbjct: 535 ADRPIRVMKNLRVCGDCHNAIKFMSVCTR----RVIIVRDNNRFHRFEDGKCSCNDYW 588
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGE 244
LV N+L++FY+K + + F QK +W+++++ +A + E+ +
Sbjct: 51 LVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSIISCFA----QNELPWMS------ 100
Query: 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304
LEF +M+ +++P+ L +CA + +G+ +H ++
Sbjct: 101 --LEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMK-------------- 144
Query: 305 SIQGLGTGSFVWNSLIDMYGRCGAI 329
G FV +SL+DMY +CG I
Sbjct: 145 --TGYDADVFVGSSLVDMYAKCGEI 167
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 30/155 (19%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAFLGMFEK 64
+++ + C LELG Q+H I CGV A+ +F +
Sbjct: 219 SFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAY-QVFNE 277
Query: 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVG 114
+P +N+ W +M+ Y + ++++ LF + G V ACS G
Sbjct: 278 VPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEG 337
Query: 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ +D M + E ++DM + GR++ A
Sbjct: 338 RYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEA 372
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 181/708 (25%), Positives = 281/708 (39%), Gaps = 211/708 (29%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE-----LC-AFLGMF 62
L + M +T P + T C + +LG ++HA ++ +C A + M+
Sbjct: 271 LFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMY 330
Query: 63 E---KMPER----------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------- 100
KMP+ +V +W S++ Y Y+E + F +I G
Sbjct: 331 TRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMT 390
Query: 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG---RMEMASGEFEEK 156
+ A L + G +++ Y+I ++ N V ++DM+ KC M A +K
Sbjct: 391 SIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450
Query: 157 DFSNLSLLKHG---------------------------------------------KEIH 171
D + + + G KEIH
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIH 510
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
H L+K L D ++ N L+D Y KCR + A F IK K +VSW +M++ AL G
Sbjct: 511 CHILRKGLL--DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNE 568
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
E A+E F RM++T + ++++L +L+A A + G+EIH Y+LR
Sbjct: 569 SE------------AVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRK 616
Query: 292 HIQLSTGVGIALISIQGL---------------GTGSFVWNSLIDMYGR--CG------- 327
L + +A++ + G + S+I+ YG CG
Sbjct: 617 GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELF 676
Query: 328 ------------------------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
A +EG + ++M+ EY +EP E Y C+VD+L R
Sbjct: 677 DKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGR 736
Query: 364 AGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLS------- 406
A + F+K M EP++ C +I E AA+ L ELEP +
Sbjct: 737 ANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLV 796
Query: 407 ------------------------------------SGKVHSFIAGDTSHSLVHKISEKL 430
GKVH F A D SH +I EKL
Sbjct: 797 SNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKL 856
Query: 431 MRLYSEIKK-IGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIKN 475
+ ++++ +GY+ GHSE++A+A+GL+ T + LR+ KN
Sbjct: 857 SEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKN 916
Query: 476 LRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
LR+C DCH+ K VSK + R+I+M D RFHHF G CSCGD W
Sbjct: 917 LRVCRDCHTFCKLVSKLFR----RDIVMRDANRFHHFESGLCSCGDSW 960
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 130/348 (37%), Gaps = 91/348 (26%)
Query: 6 VTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVC--GVELCAFLG--- 60
+T Q +D++ + +A + + C K + G Q+H+ + EL G
Sbjct: 64 LTEAFQRLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLV 123
Query: 61 --------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACS 106
+F++MP+R F+W +M+G Y G + L++ + EGV
Sbjct: 124 FMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV----- 178
Query: 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166
+G + ++ AC K L ++
Sbjct: 179 -----PLGLSSFPALL------KACAK---------------------------LRDIRS 200
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGY 225
G E+H L K S + N+L+ YAK L A F ++K V WN++L+ Y
Sbjct: 201 GSELHSL-LVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
+ G E LE F M T PN+ ++ L AC KLGKEIH
Sbjct: 260 STSGKSLE------------TLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE 333
VL+ S +V N+LI MY RCG + + E
Sbjct: 308 ASVLKSSTHSSE---------------LYVCNALIAMYTRCGKMPQAE 340
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 165/665 (24%), Positives = 273/665 (41%), Gaps = 202/665 (30%)
Query: 14 DLTNPDECTVTYALI--FQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------ 59
+++N E V+ +LI C LN ++ Q+H H++ G++ ++
Sbjct: 40 EISNQKELLVS-SLISKLDDCINLNQIK---QIHGHVLRKGLDQSCYILTKLIRTLTKLG 95
Query: 60 --------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----------GV 101
+ E + RN F WT+++ Y + G ++E + ++ + E +
Sbjct: 96 VPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSAL 155
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161
KAC +KD +G+ + ++ V ++DM++KC ++ A F+E
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMP---- 211
Query: 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAM 221
E D++ L+ YA+ ++ A F + K +V+W AM
Sbjct: 212 -------------------ERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAM 252
Query: 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
+TGF Q + ALE+F RM ++ ++ + ++++G ++ACAQ+ K
Sbjct: 253 ------------VTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 282 K------EIHGYVLRHHIQLSTGVGIALISIQGL---------------GTGSFVWNSLI 320
+ GY H+ +G ALI + F ++S+I
Sbjct: 301 DRAVQIAQKSGYSPSDHVV----IGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMI 356
Query: 321 ---DMYGRC------------------------GAIQK-------NEGWRYFEMMKKEYN 346
+GR GA+ ++G + F+ M + +
Sbjct: 357 LGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFG 416
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAA 396
++P + Y CMVDLL R G+ + L +K M EP C NP+IAE AA
Sbjct: 417 VQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAA 476
Query: 397 RHLFELEP--------LSS------------------------------------GKVHS 412
HLFELEP LS+ G++H
Sbjct: 477 EHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHK 536
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F G+ +H + +KI +KL L + +GY KR+ H+EKLALA
Sbjct: 537 FFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALA 596
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L++T+ S + ++KNLRMC DCH + S+ + IIM DN RFHHF G CS
Sbjct: 597 FSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTG----KVIIMRDNMRFHHFRSGDCS 652
Query: 519 CGDYW 523
CGD+W
Sbjct: 653 CGDFW 657
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 58/208 (27%)
Query: 144 GRMEMASGEFEE----KDFSNLSL---------LKHGKEIHPHHLKKDDLESDLLVNNSL 190
GR SG F E K+ SL L K+IH H L+K +S ++ +
Sbjct: 29 GRTSNNSGTFSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLI 88
Query: 191 ---------MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
MD YA+ R ++ ++ ++ W A++ GYA+ G +E
Sbjct: 89 RTLTKLGVPMDPYAR-RVIE-------PVQFRNPFLWTAVIRGYAIEGKFDE-------- 132
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
A+ + M + ++ P + + S +L AC +K LG++ H R G
Sbjct: 133 ----AIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLR-------GF 181
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAI 329
+ +V N++IDMY +C +I
Sbjct: 182 CFV---------YVGNTMIDMYVKCESI 200
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 169/649 (26%), Positives = 262/649 (40%), Gaps = 195/649 (30%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI--------VCGVELCAFLG- 60
L M + P+ Y + C L G +VHAH+I L F G
Sbjct: 40 LLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGK 99
Query: 61 ---------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111
+ ++MPE+NV SWT+M+ Y+ G+ E + +F ++ D
Sbjct: 100 CDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMR----------SDG 149
Query: 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171
+ + + +++ +C++ ASG L GK+IH
Sbjct: 150 KPNEFTFATVLT------SCIR---------------ASG------------LGLGKQIH 176
Query: 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFR 231
+ K + +S + V +SL+D YAK +K A F + ++ +VS A++AGYA
Sbjct: 177 GL-IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYA----- 230
Query: 232 EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291
Q G E ALE F R+ M PN ++ + +L A + + GK+ H +VLR
Sbjct: 231 -------QLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRR 283
Query: 292 HIQLSTGVGIALISI-QGLGTGSFV--------------WNSLIDMYGRCG--------- 327
+ + +LI + G S+ WN+++ Y + G
Sbjct: 284 ELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELF 343
Query: 328 -------------------------AIQKNEGWRYFE-MMKKEYNMEPAMEQYCCMVDLL 361
++ G F+ M+ EY +P E Y C+VD+L
Sbjct: 344 RLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDML 403
Query: 362 ARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLSSGK-- 409
RAG+ D+ F+K+MP +P++ C + DI E R L E+EP ++G
Sbjct: 404 GRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYV 463
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
+H F A D +H ++
Sbjct: 464 ILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLA 523
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
K+ + ++K+ GY+ + GHSEKLAL FGLI+T G P+RV K
Sbjct: 524 KMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFK 583
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C DCH+ K SK ERE+ + D RFH VDG CSCGDYW
Sbjct: 584 NLRICVDCHNFAKIFSKV----FEREVSLRDKNRFHQIVDGICSCGDYW 628
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 152/597 (25%), Positives = 242/597 (40%), Gaps = 199/597 (33%)
Query: 56 CAFLGM----FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------V 101
C F+ + F+ M ER++ SW +M+G+Y E +++F + +EG V
Sbjct: 109 CGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 168
Query: 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME-------------- 147
AC D K ++ + + N V +LD++ KCG ++
Sbjct: 169 LSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSS 228
Query: 148 -----MASGEFEEKDF-----------------------------SNLSLLKHGKEIHPH 173
M +G + K++ SNL+ L GK++H
Sbjct: 229 VTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHA- 287
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
+ K S++ V +S +D YAKC L+ ++ FS++++K+L WN +
Sbjct: 288 VICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTI------------ 335
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293
I+GF ++ + + F +M Q M PN ++ S +L+ C
Sbjct: 336 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC--------------------- 374
Query: 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ 353
G G +++ G R+F++M+ Y + P +
Sbjct: 375 ------------------------------GHTGLVEE--GRRFFKLMRTTYGLSPNVVH 402
Query: 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELE 403
Y CMVD+L RAG + +K +PF+P+++ C N ++AE AA LFELE
Sbjct: 403 YSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELE 462
Query: 404 PLSSG-------------------------------------------KVHSFIAGDTSH 420
P ++G KVH+F G++ H
Sbjct: 463 PENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGH 522
Query: 421 SLVHKISEKLMRLYSEIKKIGYMKRIP--------------ACGHSEKLALAFGLISTSP 466
+ +I L L + +K GY + HSEKLAL FGL+
Sbjct: 523 PRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPE 582
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
SP+R++KNLR+C DCH K S A + R II+ D RFHHF DG CSCGD+W
Sbjct: 583 SSPVRIMKNLRICVDCHEFMKAASMATR----RFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225
HGK I + DLE D+ + N L++ Y+KC ++++A F + ++ LVSWN M+ Y
Sbjct: 84 HGKII------RIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLY 137
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E AL+ F M + + ++S VL+AC K++H
Sbjct: 138 TRNRMESE------------ALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLH 185
Query: 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++ I L+ VG A L+D+Y +CG I+ + + FE M+
Sbjct: 186 CLSVKTCIDLNLYVGTA----------------LLDLYAKCGMIK--DAVQVFESMQ 224
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 162/606 (26%), Positives = 258/606 (42%), Gaps = 168/606 (27%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDY 120
+F+++ E++ SWT+MM Y GY++ L EG+ D + Y+
Sbjct: 210 VFDEILEKDERSWTTMMTGYVKNGYFDLGEELL-----EGM--------DDNMKLVAYNA 256
Query: 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASG-EFEEKDFSNL-------SLLKHGKEIHP 172
MIS V R ++ R ++SG E +E + ++ LL+ GK++H
Sbjct: 257 MIS------GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310
Query: 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG--- 229
+ L+++D +NSL+ Y KC A F K+ K LVSWNA+L+GY G
Sbjct: 311 YVLRREDFS--FHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368
Query: 230 -----FREE-----------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273
F+E I+G + G GE L+ FS M + +P + SG + +CA
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428
Query: 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI-----------QGLGT----GSFVWNS 318
+ + G++ H +L+ S G ALI++ Q T S WN+
Sbjct: 429 VLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNA 488
Query: 319 LIDMYGRCG---------------------------------AIQKNEGWRYFEMMKKEY 345
LI G+ G A ++G +YF+ M+ Y
Sbjct: 489 LIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVY 548
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHA 395
+ P + Y ++DLL R+G+F D + ++ +PF+P++ C N ++ A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 396 ARHLFELEPLSSG-------------------------------------------KVHS 412
A LF L P G +VH+
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLAL 457
F+ DTSH + L L E++++GY+ K HSEK+A+
Sbjct: 669 FLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAV 728
Query: 458 AFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGAC 517
AFGL+ PG+ +R+ KNLR CGDCH+ +++S +R+II+ D RFHHF +G C
Sbjct: 729 AFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVV----QRDIILRDRKRFHHFRNGEC 784
Query: 518 SCGDYW 523
SCG++W
Sbjct: 785 SCGNFW 790
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 186 VNNSLMDFYAKC----RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGF---REE----- 233
V+N+L+ Y+KC L A F +I +K SW M+ GY G+ EE
Sbjct: 186 VSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGM 245
Query: 234 ------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281
I+G+ G + ALE RM+ + ++ + + V+ ACA +LG
Sbjct: 246 DDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLG 305
Query: 282 KEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMYGRC 326
K++H YVLR S +L+S+ + + V WN+L+ Y
Sbjct: 306 KQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSS 364
Query: 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF---MKKMPFEP 381
G I E F+ MK E + + M+ LA G ++ L MK+ FEP
Sbjct: 365 GHI--GEAKLIFKEMK-----EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEP 415
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG------------------ 229
N L+D Y K L A F +I + ++ M++GY G
Sbjct: 53 NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112
Query: 230 ---FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIH 285
+ ITGF+ DG +A+ F +M +P+ + + VLA A V K + H
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172
Query: 286 GYVLRHHIQLSTGVGIALISI 306
L+ T V AL+S+
Sbjct: 173 AAALKSGAGYITSVSNALVSV 193
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 168/636 (26%), Positives = 258/636 (40%), Gaps = 190/636 (29%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
++ + C L ++ G Q H V G + F+ +F+++
Sbjct: 78 SFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEI 137
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIK 125
P+RN+ SWTSM+ Y++ G + V+LF KD V ++ D + +
Sbjct: 138 PKRNIVSWTSMIRGYDLNGNALDAVSLF---------------KDLLVDENDDDDAMFLD 182
Query: 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185
G ++ + C R+ A G E IH +K+ + +
Sbjct: 183 SMG-------LVSVISACSRVP-AKGLTES--------------IHSFVIKRG-FDRGVS 219
Query: 186 VNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243
V N+L+D YAK + VA F +I K VS+N++++ YA G E
Sbjct: 220 VGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE---------- 269
Query: 244 ETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302
A E F R+++ + N I+LS VL A + ++GK IH V+R ++ VG +
Sbjct: 270 --AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTS 327
Query: 303 LISI---------------QGLGTGSFVWNSLIDMYGRCGAIQKN--------------- 332
+I + + W ++I YG G K
Sbjct: 328 IIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPN 387
Query: 333 ------------------EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFM 374
EGWR+F MK + +EP +E Y CMVDLL RAG + +
Sbjct: 388 YITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447
Query: 375 KKMPFEPSSA------EPC----NPDIAEHAARHLFELEPLS------------------ 406
++M +P S C N ++AE + LFEL+ +
Sbjct: 448 QRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWK 507
Query: 407 -------------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIG 441
+G+VH F+ GD H KI E L L ++ + G
Sbjct: 508 DVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAG 567
Query: 442 YM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTK 487
Y+ K + HSEKLA+AFG+++T PGS + V+KNLR+C DCH+ K
Sbjct: 568 YVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIK 627
Query: 488 YVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+SK +RE ++ D RFHHF DG CSCGDYW
Sbjct: 628 LISKIV----DREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 35.8 bits (81), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 28/121 (23%)
Query: 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269
+ + + SWN+++A A + GD AL FS M + + P S +
Sbjct: 36 VDKTDVFSWNSVIADLA------------RSGDSAEALLAFSSMRKLSLYPTRSSFPCAI 83
Query: 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
AC+ + GK+ H + G + FV ++LI MY CG +
Sbjct: 84 KACSSLFDIFSGKQTHQQAF----------------VFGYQSDIFVSSALIVMYSTCGKL 127
Query: 330 Q 330
+
Sbjct: 128 E 128
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 153/589 (25%), Positives = 234/589 (39%), Gaps = 195/589 (33%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG----VYKACSELKD 110
+F+++P ++V SW +M+ Y G Y+E + LF ++ DE V AC++
Sbjct: 222 LFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGS 281
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE---KD---------- 157
+G+ V+ ++ F N + ++D++ KCG +E A G FE KD
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341
Query: 158 FSNLSLLKHGKEIHPHHLKKDDLESDLL-------------------------------- 185
+++++L K + L+ + +D+
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401
Query: 186 ----VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG 241
+ SL+D YAKC ++ AH F+ I K L SWNAM+ G+A+ +G
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM------------HG 449
Query: 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
+ + + FSRM + +QP+ I+ G+L+AC+ LG+ I
Sbjct: 450 RADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI----------------- 492
Query: 302 ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361
F M ++Y M P +E Y CM+DLL
Sbjct: 493 ------------------------------------FRTMTQDYKMTPKLEHYGCMIDLL 516
Query: 362 ARAGQFDDTLNFMKKMPFEPSSAEPC----------NPDIAEHAARHLFELEPLSSGK-- 409
+G F + + M EP C N ++ E A +L ++EP + G
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 410 -----------------------------------------VHSFIAGDTSHSLVHKISE 428
VH FI GD H +I
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 636
Query: 429 KLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLISTSPGSPLRVIK 474
L + ++K G++ HSEKLA+AFGLIST PG+ L ++K
Sbjct: 637 MLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 696
Query: 475 NLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
NLR+C +CH TK +SK K REII D RFHHF DG CSC DYW
Sbjct: 697 NLRVCRNCHEATKLISKIYK----REIIARDRTRFHHFRDGVCSCNDYW 741
Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/391 (21%), Positives = 164/391 (41%), Gaps = 87/391 (22%)
Query: 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFL------------------GMFE 63
+ T+ + + C K + G Q+H H++ G +L ++ +F+
Sbjct: 134 SYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFD 193
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK------ACSELKDHRVGKDV 117
K P R+V S+T+++ Y GY E LF + + V +E +++ ++
Sbjct: 194 KSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALEL 253
Query: 118 YDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177
+ M+ + V+ + G +E+ G+++H L
Sbjct: 254 FKDMMKTNVRPDESTMVTVVSACAQSGSIEL------------------GRQVH---LWI 292
Query: 178 DD--LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEIT 235
DD S+L + N+L+D Y+KC L+ A F ++ K ++SWN ++ GY +E
Sbjct: 293 DDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKE-- 350
Query: 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295
AL F M+++ PN +++ +L ACA + +G+ IH Y+ +
Sbjct: 351 ----------ALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR---- 396
Query: 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN--MEPAMEQ 353
++G+ S + SLIDMY +CG I E + +N + ++
Sbjct: 397 ----------LKGVTNASSLRTSLIDMYAKCGDI---------EAAHQVFNSILHKSLSS 437
Query: 354 YCCMVDLLARAGQFD---DTLNFMKKMPFEP 381
+ M+ A G+ D D + M+K+ +P
Sbjct: 438 WNAMIFGFAMHGRADASFDLFSRMRKIGIQP 468
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F I++ +L+ WN M G+AL D +AL+ + MI + PN+ +
Sbjct: 91 FKTIQEPNLLIWNTMFRGHALSS------------DPVSALKLYVCMISLGLLPNSYTFP 138
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI------ 320
VL +CA+ K FK G++IHG+VL+ L V +LIS+ +V N +
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISM-------YVQNGRLEDAHKV 191
Query: 321 -------DMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME--QYCCMVDLLARAGQFDDTL 371
D+ I+ Y E +K ++ P + + M+ A G + + L
Sbjct: 192 FDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251
Query: 372 NFMKKM 377
K M
Sbjct: 252 ELFKDM 257
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 142/481 (29%), Positives = 203/481 (42%), Gaps = 133/481 (27%)
Query: 159 SNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSW 218
S L L+ GKE+H + ++ LE DL V S++ Y C L F ++ K LVSW
Sbjct: 507 SKLKSLRLGKEVHGF-IIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSW 565
Query: 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278
N ++ GY GF + AL F +M+ +Q IS+ V AC+ +
Sbjct: 566 NTVITGYLQNGFPDR------------ALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 613
Query: 279 KLGKEIHGYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLIDMY 323
+LG+E H Y L+H ++ + +LI + GL S WN++I Y
Sbjct: 614 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 673
Query: 324 GRCGAIQK---------------------------------NEGWRYFEMMKKEYNMEPA 350
G G ++ +EG RY + MK + ++P
Sbjct: 674 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 733
Query: 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-------EPC----NPDIAEHAARHL 399
++ Y C++D+L RAGQ D L + + E + C N ++ E A L
Sbjct: 734 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 793
Query: 400 FELEP-----------LSSG--------------------------------KVHSFIAG 416
FELEP L +G KV SF+ G
Sbjct: 794 FELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVG 853
Query: 417 DTSHSLVHKISEKLMRLYSEIKKIGYMKRIPAC--------------GHSEKLALAFGLI 462
+ +I L +I K+GY + GHSEKLAL +GLI
Sbjct: 854 ERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 913
Query: 463 STSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522
TS G+ +RV KNLR+C DCH+ K +SK EREI++ DN RFHHF +G CSCGDY
Sbjct: 914 KTSEGTTIRVYKNLRICVDCHNAAKLISKV----MEREIVVRDNKRFHHFKNGVCSCGDY 969
Query: 523 W 523
W
Sbjct: 970 W 970
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 173/387 (44%), Gaps = 98/387 (25%)
Query: 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG- 60
V++ ++ + DL PD TY + + C ++++ +G+ VH ++ G+ F+G
Sbjct: 170 VLETFIEMISTTDLL-PDH--FTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGN 226
Query: 61 -----------------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100
+F+ MPERN+ SW SM+ +++ G+ EE L +++E
Sbjct: 227 ALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDG 286
Query: 101 -----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----- 144
V C+ ++ +GK V+ + + ++ + + ++DM+ KCG
Sbjct: 287 AFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA 346
Query: 145 -----------------------------------RMEMASGEFEEKDFSNL-------- 161
R +A GE + D +
Sbjct: 347 QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCF 406
Query: 162 --SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWN 219
S L KE+H + LK++ + ++L V N+ + YAKC L A F I+ K + SWN
Sbjct: 407 HESFLPSLKELHCYSLKQEFVYNEL-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 465
Query: 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279
A++ G+A Q D +L+ +M + + P++ ++ +L+AC+++K +
Sbjct: 466 ALIGGHA------------QSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLR 513
Query: 280 LGKEIHGYVLRHHIQLSTGVGIALISI 306
LGKE+HG+++R+ ++ V ++++S+
Sbjct: 514 LGKEVHGFIIRNWLERDLFVYLSVLSL 540
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/374 (21%), Positives = 146/374 (39%), Gaps = 99/374 (26%)
Query: 26 ALIFQRCPKLNNLELGIQVHAHL----------IVCG--VELCAFLG-------MFEKMP 66
L+ Q K ++E+G ++H + ++C + + A G +F+ +
Sbjct: 88 GLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALR 147
Query: 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF 126
+N+F W +++ Y+ Y+E++ F +I L DH + Y IK
Sbjct: 148 SKNLFQWNAVISSYSRNELYDEVLETFIEMI-----STTDLLPDH------FTYPCVIK- 195
Query: 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186
AC G ++ G L HG + K L D+ V
Sbjct: 196 ---ACA-----------GMSDVGIG-----------LAVHGLVV------KTGLVEDVFV 224
Query: 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE---ITGFTQYGDG 243
N+L+ FY ++ A F + +++LVSWN+M+ ++ GF EE + G +G
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284
Query: 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303
+ A P+ +L VL CA+ + LGK +HG+ ++ + +
Sbjct: 285 DGAF-----------MPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLN--- 330
Query: 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363
N+L+DMY +CG I + M + N + + MV +
Sbjct: 331 -------------NALMDMYSKCGCITNAQ-------MIFKMNNNKNVVSWNTMVGGFSA 370
Query: 364 AGQFDDTLNFMKKM 377
G T + +++M
Sbjct: 371 EGDTHGTFDVLRQM 384
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 35/186 (18%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-------------------CGVELCAF 58
PD TV L C KL +L LG +VH +I CG ELC
Sbjct: 494 PDSFTVCSLL--SACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG-ELCTV 550
Query: 59 LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSEL 108
+F+ M ++++ SW +++ Y G+ + + +F ++ G V+ ACS L
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 610
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF---EEKDFSNLSLLK 165
R+G++ + Y + E +A + ++DM+ K G + +S F +EK ++ + +
Sbjct: 611 PSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI 670
Query: 166 HGKEIH 171
G IH
Sbjct: 671 MGYGIH 676
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 138/485 (28%), Positives = 206/485 (42%), Gaps = 145/485 (29%)
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE------ 233
L+ D V SL++ Y+ C L+ A F K L +WN+++ YA G ++
Sbjct: 93 LDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFD 152
Query: 234 -------------ITGFTQYGDGETALEFFSRMI-----QTDMQPNTISLSGVLAACAQV 275
I G+ G + AL+ F M + ++PN ++S VL+AC ++
Sbjct: 153 EMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRL 212
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LGTGSFVWNSL------------ 319
+ GK +H Y+ ++H+++ +G ALI + L V+N+L
Sbjct: 213 GALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAM 272
Query: 320 ---IDMYG---RC------------------------GAIQK----NEGWRYFEMMKKEY 345
+ MYG C GA NEG YF+MM +E+
Sbjct: 273 ICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEF 332
Query: 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS--------SAEPCNPDI--AEHA 395
+ P+++ Y CMVDL R+G + +F+ MP EP S DI E A
Sbjct: 333 GITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGA 392
Query: 396 ARHLFELEPLSSGK-------------------------------------------VHS 412
+ L EL+P++SG VH
Sbjct: 393 LKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHE 452
Query: 413 FIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALA 458
F+ GD S +I L + +++ GY+ K I HSEKLA+A
Sbjct: 453 FVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIA 512
Query: 459 FGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACS 518
F L+ T PG+P+R+IKNLR+CGDCH K +SK REI++ D RFHHF DG+CS
Sbjct: 513 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKL----FSREIVVRDCNRFHHFRDGSCS 568
Query: 519 CGDYW 523
C D+W
Sbjct: 569 CRDFW 573
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 140/510 (27%), Positives = 219/510 (42%), Gaps = 142/510 (27%)
Query: 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197
+M K +++M + ++L L G++ H L K + V + L+DFY+KC
Sbjct: 230 EMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK-LIKAGFHQNSHVGSGLIDFYSKC 288
Query: 198 ---RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254
+ + F +I LV WN M++GY++ EE++ E A++ F +M
Sbjct: 289 GGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMN---EELS--------EEAVKSFRQMQ 337
Query: 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS-TGVGIALISI------- 306
+ +P+ S V +AC+ + K+IHG ++ HI + V ALIS+
Sbjct: 338 RIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNL 397
Query: 307 -------------------------------------------QGLGTGSFVWNSLIDMY 323
G+ + +++
Sbjct: 398 QDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSAC 457
Query: 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSS 383
CG + +EG YF MK+ + +EP E Y CM+DLL RAG+ ++ F+ MP++P S
Sbjct: 458 AHCGKV--DEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGS 515
Query: 384 AE------PC----NPDIAEHAARHLFELEPLSSG------------------------- 408
C N +AE AA L ++PL++
Sbjct: 516 VAWAALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSM 575
Query: 409 ------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM------- 443
K H F+A D SH ++ +++E L + ++KK+GY+
Sbjct: 576 RGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAM 635
Query: 444 ----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAE 493
+ + HSEKLA+AFGL+ST G L V+KNLR+CGDCH+ K++S
Sbjct: 636 VKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVA 695
Query: 494 KREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ DN RFH F DG CSCGDYW
Sbjct: 696 G----REIIVRDNLRFHCFKDGKCSCGDYW 721
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 62/260 (23%)
Query: 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168
+D GK ++ + + + ++++ KCGR+ A F +
Sbjct: 22 RDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTE----------- 70
Query: 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228
E ++ N ++ YAK + +A F +I Q VS+N +++GYA
Sbjct: 71 ------------EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADA 118
Query: 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288
RE A+ F RM + + + +LSG++AAC L K++H +
Sbjct: 119 --RETF----------AAMVLFKRMRKLGFEVDGFTLSGLIAACCD--RVDLIKQLHCFS 164
Query: 289 LRHHIQLSTGVGIALISIQGLG----------------TGSFVWNSLIDMYGRCGAIQKN 332
+ + V A ++ G WNS+I YG Q
Sbjct: 165 VSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYG-----QHK 219
Query: 333 EGWR----YFEMMKKEYNME 348
EG + Y EM+ K + ++
Sbjct: 220 EGAKALALYKEMIFKGFKID 239
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 14 DLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSW 73
+L++P +C + L + N + + + + G L +F++MPE N S+
Sbjct: 357 NLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSG-NLQDARWVFDRMPELNAVSF 415
Query: 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMI- 122
M+ Y G+ E + L+ ++D G V AC+ G++ ++ M
Sbjct: 416 NCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKE 475
Query: 123 SIKFEGNACVKRPVLDMFIKCGRMEMA 149
+ K E A ++D+ + G++E A
Sbjct: 476 TFKIEPEAEHYSCMIDLLGRAGKLEEA 502
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 158/612 (25%), Positives = 240/612 (39%), Gaps = 186/612 (30%)
Query: 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87
+F P+ + I + + V V F++MP ++ SW +M+ Y G E
Sbjct: 115 LFDEIPEPDTFSYNIMLSCY--VRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEME 172
Query: 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147
+ LFY ++ E N ++ +I+CG +E
Sbjct: 173 KARELFYSMM-----------------------------EKNEVSWNAMISGYIECGDLE 203
Query: 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207
AS H K ++ +++ Y K + +++A F
Sbjct: 204 KAS-----------------------HFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMF 240
Query: 208 SKIK-QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
+ K+LV+WNAM++GY + E L+ F M++ ++PN+ LS
Sbjct: 241 KDMTVNKNLVTWNAMISGY------------VENSRPEDGLKLFRAMLEEGIRPNSSGLS 288
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ----GLGTG---------- 312
L C+++ +LG++IH V + + +LIS+ LG
Sbjct: 289 SALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKK 348
Query: 313 -SFVWNSLIDMYGRCGAIQK---------------------------------NEGWRYF 338
WN++I Y + G K N G YF
Sbjct: 349 DVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYF 408
Query: 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----N 388
E M ++Y +EP + Y CMVDLL RAG+ ++ L ++ MPF P +A C N
Sbjct: 409 ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKN 468
Query: 389 PDIAEHAARHLFELEPLSSG---------------------------------------- 408
++AE AA L +L ++
Sbjct: 469 VELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIE 528
Query: 409 ---KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY--------------MKRIPACGH 451
KVH F + D H + I +KL L ++K GY K H
Sbjct: 529 IRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWH 588
Query: 452 SEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHH 511
SEKLA+AFG I GS ++V KNLR+CGDCH K++S+ EK REII+ D RFHH
Sbjct: 589 SEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEK----REIIVRDTTRFHH 644
Query: 512 FVDGACSCGDYW 523
F DG+CSCGDYW
Sbjct: 645 FKDGSCSCGDYW 656
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 101/284 (35%), Gaps = 93/284 (32%)
Query: 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229
+ H L + E D N ++ Y + + A F ++ K SWN M+ GYA G
Sbjct: 110 MEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRG 169
Query: 230 FREE-------------------ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270
E+ I+G+ + GD E A FF + GV+A
Sbjct: 170 EMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF----------KVAPVRGVVA 219
Query: 271 ACAQVKGFKLGKE-----------------------IHGYV---------------LRHH 292
A + G+ K+ I GYV L
Sbjct: 220 WTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEG 279
Query: 293 IQL-STGVGIALI------------SIQGLGTGSFVWN------SLIDMYGRCGAIQKNE 333
I+ S+G+ AL+ I + + S + N SLI MY +CG + +
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGEL--GD 337
Query: 334 GWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
W+ FE+MKK+ + + M+ A+ G D L ++M
Sbjct: 338 AWKLFEVMKKK-----DVVAWNAMISGYAQHGNADKALCLFREM 376
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 213/507 (42%), Gaps = 146/507 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K +NL + HG+++H H + + +D +V +SL+D YAKC L A F I+ K+
Sbjct: 113 KACANLGSIDHGRQVHCHFIV-SEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNT 171
Query: 216 VSWNAMLAGYALGGFREE-------------------ITGFTQYGDGETALEFFSRMIQT 256
+SW AM++GYA G +EE I+GF Q G G A F+ M +
Sbjct: 172 ISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231
Query: 257 DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315
+ + + LS ++ ACA + G+++HG V+ + ALI + +
Sbjct: 232 RVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIA 291
Query: 316 ---------------WNSLIDMYGRCGAIQK----------------------------- 331
W SLI + G +K
Sbjct: 292 AKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 351
Query: 332 ----NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEP- 386
+G F+ M K+Y + P+++ Y C++DLL R+G D+ N + MPF P EP
Sbjct: 352 VGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD--EPT 409
Query: 387 -------CNPD--------IAEH-------------------------------AARHLF 400
C IA+H A R L
Sbjct: 410 WAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLG 469
Query: 401 ELE----PLSSG-----KVHSFIAGDTSHSLVHKISEKLMRLYSEIK-KIGYM------- 443
E+E P S + F AG+TSH L I L +L E++ + GY+
Sbjct: 470 EMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWIL 529
Query: 444 -------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKRE 496
K HSE+ A+A+GL+ PG+P+R++KNLR+CGDCH K++S+
Sbjct: 530 HDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEIT--- 586
Query: 497 REREIIMIDNYRFHHFVDGACSCGDYW 523
EREII+ D R+HHF G CSC D+W
Sbjct: 587 -EREIIVRDATRYHHFKGGKCSCNDFW 612
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 131/331 (39%), Gaps = 81/331 (24%)
Query: 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKMPERNV 70
Q C + L +HAH++ G+ C L +F++MP R+
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 71 FSWTSMMGMYN-------VLGYYEEIVNLFYLLIDEGVY----KACSELKDHRVGKDVYD 119
+W S++ N L + + + L D+ V+ KAC+ L G+ V+
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ I ++ + VK ++DM+ KCG + A F+ N
Sbjct: 130 HFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKN------------------- 170
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
+ +++ YAK + A F + K+L SW A+ I+GF Q
Sbjct: 171 ----TISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTAL------------ISGFVQ 214
Query: 240 YGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTG 298
G G A F+ M + + + + LS ++ ACA + G+++HG V
Sbjct: 215 SGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLV---------- 264
Query: 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329
IAL G + F+ N+LIDMY +C +
Sbjct: 265 --IAL----GFDSCVFISNALIDMYAKCSDV 289
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L K +H H +K ++ L N +L++ Y KC A F ++ + ++W ++L
Sbjct: 19 LTTAKALHAHIVKLGIVQCCPLAN-TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL- 76
Query: 224 GYALGGFREEITGFTQYG-DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK 282
T Q G+T F S + ++P+ S ++ ACA + G+
Sbjct: 77 -----------TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR 125
Query: 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342
++H + + + V +SL+DMY +CG + N F+ ++
Sbjct: 126 QVHCHFI----------------VSEYANDEVVKSSLVDMYAKCGLL--NSAKAVFDSIR 167
Query: 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+ + + MV A++G+ ++ L + +P +
Sbjct: 168 VKNTI-----SWTAMVSGYAKSGRKEEALELFRILPVK 200
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 41/172 (23%)
Query: 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------- 60
+ +D+ +P + + I C L G QVH +I G + C F+
Sbjct: 231 ERVDILDP----LVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286
Query: 61 --------MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK--------- 103
+F +M R+V SWTS++ G E+ + L+ ++ GV
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346
Query: 104 -ACSELKDHRVGKDVY-----DYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149
ACS + G++++ DY I + C +LD+ + G ++ A
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTC----LLDLLGRSGLLDEA 394
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 162/643 (25%), Positives = 248/643 (38%), Gaps = 211/643 (32%)
Query: 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFEKM 65
T+ F+ L G Q+HA + CG L F+G +F+++
Sbjct: 110 TFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 169
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLF--YLLIDE--------GVYKACSELKDHRVGK 115
PERN+ +W + + G E + F + ID ACS+ +G
Sbjct: 170 PERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGM 229
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRM--------EMASGE--------------- 152
++ ++ F+ + V ++D + KC ++ EM +
Sbjct: 230 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 289
Query: 153 ----------------FEEKDF---------SNLSLLKHGKEIHPHHLKKDDLESDLLVN 187
E DF + ++ L+ G+ IH H +K +E + V
Sbjct: 290 EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC-VERTIFVG 348
Query: 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247
++L+D Y KC ++ + F ++ +K+LV+ N+++ GYA G + AL
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYA------------HQGQVDMAL 396
Query: 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307
F M P ++ V
Sbjct: 397 ALFEEMAPRGCGPTPNYMTFV--------------------------------------- 417
Query: 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367
SL+ R GA++ G + F+ M+ Y +EP E Y C+VD+L RAG
Sbjct: 418 ----------SLLSACSRAGAVEN--GMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 465
Query: 368 DDTLNFMKKMPFEPSSA------EPCN----PDIAEHAARHLFELEPLSSG--------- 408
+ F+KKMP +P+ + C P + AA +LF+L+P SG
Sbjct: 466 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTF 525
Query: 409 ----------------------------------KVHSFIAGDTSHSLVHKISEKLMRLY 434
+VH+F A D SH L +I L +L
Sbjct: 526 AAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLR 585
Query: 435 SEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCG 480
+E++ GY K HSEKLALAFGL+S P+R+ KNLR+CG
Sbjct: 586 NEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICG 645
Query: 481 DCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
DCHS K+VS + K REII+ DN RFH F DG CSC DYW
Sbjct: 646 DCHSFFKFVSGSVK----REIIVRDNNRFHRFKDGICSCKDYW 684
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/381 (22%), Positives = 151/381 (39%), Gaps = 97/381 (25%)
Query: 66 PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV----------YKACSELKDHRVGK 115
P RNV SWTS++ G++ + F+ + EGV +KA + L+ GK
Sbjct: 69 PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 128
Query: 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL--------LKHG 167
++ + + V DM+ K + A F+E NL + G
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 188
Query: 168 K--------------EIHPHHLK-------------------------KDDLESDLLVNN 188
+ + HP+ + + ++D+ V N
Sbjct: 189 RPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCN 248
Query: 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248
L+DFY KC+ ++ + F+++ K+ VSW +++A Y Q + E A
Sbjct: 249 GLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAY------------VQNHEDEKASV 296
Query: 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308
+ R + ++ + +S VL+ACA + G +LG+ IH + ++ ++ +
Sbjct: 297 LYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI----------- 345
Query: 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368
FV ++L+DMYG+CG I+ +E + F+ M E + ++ A GQ D
Sbjct: 346 -----FVGSALVDMYGKCGCIEDSE--QAFDEMP-----EKNLVTRNSLIGGYAHQGQVD 393
Query: 369 DTLNFMKKMPFEPSSAEPCNP 389
L FE + C P
Sbjct: 394 MALAL-----FEEMAPRGCGP 409
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K+ + S ++ G+ +H +K D + N L++ Y+K + + A +++
Sbjct: 14 KNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNV 73
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
VSW ++ I+G Q G TAL F M + + PN + A A +
Sbjct: 74 VSWTSL------------ISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASL 121
Query: 276 KGFKLGKEIHGYVLR 290
+ GK+IH ++
Sbjct: 122 RLPVTGKQIHALAVK 136
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/477 (27%), Positives = 199/477 (41%), Gaps = 135/477 (28%)
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
L+ G+++H +K L+ ++ V +L++ Y +C + A C F +I + +V +NAM+
Sbjct: 145 LEEGRQLHCLSMKLG-LDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283
GYA E AL F M ++PN I+L VL++CA + LGK
Sbjct: 204 GYARRNRPNE------------ALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKW 251
Query: 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSF----------------VWNSLIDMYGRCG 327
IH Y +H V ALI + GS W+++I Y G
Sbjct: 252 IHKYAKKHSFCKYVKVNTALIDMFA-KCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHG 310
Query: 328 AIQKN---------------------------------EGWRYFEMMKKEYNMEPAMEQY 354
+K+ EG +YF M ++ + P+++ Y
Sbjct: 311 KAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHY 370
Query: 355 CCMVDLLARAGQFDDTLNFMKKMPFEPSS----------AEPCNPDIAEHAARHLFELEP 404
MVDLL+RAG +D F+ K+P P+ + N D+AE + +FEL+
Sbjct: 371 GSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDD 430
Query: 405 LSSGK-------------------------------------------VHSFIAGDTSHS 421
G VH F +GD S
Sbjct: 431 SHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKS 490
Query: 422 LVHKISEKLMRLYSEIKKIGYM---------------KRIPACGHSEKLALAFGLISTSP 466
K+ L + E+K GY+ K I HSEKLA+ FGL++T P
Sbjct: 491 ATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPP 550
Query: 467 GSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
G+ +RV+KNLR+C DCH+ K +S R++++ D RFHHF DG CSCGD+W
Sbjct: 551 GTTIRVVKNLRVCRDCHNAAKLISLIFG----RKVVLRDVQRFHHFEDGKCSCGDFW 603
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 70/171 (40%), Gaps = 35/171 (20%)
Query: 207 FSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266
F + + +V +N+M GY +++ + F +++ + P+ +
Sbjct: 86 FEAMSEPDIVIFNSMARGY------------SRFTNPLEVFSLFVEILEDGILPDNYTFP 133
Query: 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326
+L ACA K + G+++H ++ GL +V +LI+MY C
Sbjct: 134 SLLKACAVAKALEEGRQLHCLSMK----------------LGLDDNVYVCPTLINMYTEC 177
Query: 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + F+ + +EP + Y M+ AR + ++ L+ ++M
Sbjct: 178 EDV--DSARCVFDRI-----VEPCVVCYNAMITGYARRNRPNEALSLFREM 221
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 136/480 (28%), Positives = 210/480 (43%), Gaps = 143/480 (29%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVSWNAMLAGY 225
GK+IH LK +++ + N+L+ Y KC + FS++ ++ V+WN+M++GY
Sbjct: 536 GKQIHGLALK-NNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY 594
Query: 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285
E+ AL+ M+QT + ++ + VL+A A V + G E+H
Sbjct: 595 ----IHNELLA--------KALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVH 642
Query: 286 GYVLRHHIQLSTGVGIALI-----------SIQGLGT----GSFVWNSLIDMYGRCGAIQ 330
+R ++ VG AL+ +++ T S+ WNS+I Y R G +
Sbjct: 643 ACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGE 702
Query: 331 K----------------------------------NEGWRYFEMMKKEYNMEPAMEQYCC 356
+ EG+++FE M Y + P +E + C
Sbjct: 703 EALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSC 762
Query: 357 MVDLLARAGQFDDTLNFMKKMPFEPS------------SAEPCNPDIAEHAARHLFELEP 404
M D+L RAG+ D +F++KMP +P+ A ++ + AA LF+LEP
Sbjct: 763 MADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEP 822
Query: 405 -------------LSSGK------------------------------VHSFIAGDTSHS 421
+ G+ VH F+AGD SH
Sbjct: 823 ENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHP 882
Query: 422 LVHKISEKLMRLYSEIKKIGYMKRIPACG-----------------HSEKLALAFGLIST 464
I +KL L +++ GY +P G HSEKLA+AF L +
Sbjct: 883 DADVIYKKLKELNRKMRDAGY---VPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQ 939
Query: 465 SPGS-PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
+ P+R++KNLR+CGDCHS KY+SK E R+II+ D+ RFHHF DGACSC D+W
Sbjct: 940 RSSTLPIRIMKNLRVCGDCHSAFKYISKIEG----RQIILRDSNRFHHFQDGACSCSDFW 995
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212
F E + LK G+E+H H + ++ + + N L++ YAKC + A F +
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377
Query: 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272
K VSWN+M ITG Q G A+E + M + D+ P + +L L++C
Sbjct: 378 KDSVSWNSM------------ITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425
Query: 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
A +K KLG++IHG L+ I L+ V AL+++
Sbjct: 426 ASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTL 459
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/369 (21%), Positives = 151/369 (40%), Gaps = 90/369 (24%)
Query: 61 MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY----------KACSELKD 110
+F++MP RN SW ++ Y+ G ++E + ++ EG++ +AC E+
Sbjct: 58 VFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGS 117
Query: 111 HRV--GKDVYDYMISIKFEGNACVKRPVLDMFIKC----GRMEMASGEFEEKD------- 157
+ G+ ++ M + + +A V ++ M+ KC G A G+ E K+
Sbjct: 118 VGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSI 177
Query: 158 ----------------FSNL-------------SLLKHGKEIHPHHLK----------KD 178
FS++ SL+ + ++ K
Sbjct: 178 ISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKS 237
Query: 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFT 238
L +DL V + L+ +AK L A F++++ ++ V+ N ++ G + EE T
Sbjct: 238 GLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKL- 296
Query: 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLA-ACAQVKGFKLGKEIHGYVLRHHIQLST 297
+ D + MI + I LS + A+ G K G+E+HG+V ++T
Sbjct: 297 -FMD-------MNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHV------ITT 342
Query: 298 GVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---NMEPAMEQY 354
G+ ++ G+G G L++MY +CG+I YF K +M ++Q
Sbjct: 343 GLVDFMV---GIGNG------LVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQN 393
Query: 355 CCMVDLLAR 363
C ++ + R
Sbjct: 394 GCFIEAVER 402
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE 233
L K+ L+ D+ + N+L++ Y + A F ++ ++ VSW +++GY+ G +E
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85
Query: 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK--GFKLGKEIHGYVLRH 291
AL F M++ + N + VL AC ++ G G++IHG + +
Sbjct: 86 ------------ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKL 133
Query: 292 HIQLSTGVGIALIS-----IQGLG-----------TGSFVWNSLIDMYGRCGAIQKNEGW 335
+ V LIS I +G S WNS+I +Y + G + +
Sbjct: 134 SYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAG--DQRSAF 191
Query: 336 RYFEMMK------KEYNMEPAMEQYCCMVD 359
R F M+ EY + C + +
Sbjct: 192 RIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/431 (21%), Positives = 162/431 (37%), Gaps = 103/431 (23%)
Query: 10 LQSMDLTNPDECTVTYALIFQRCPKLN-----NLELGIQVHAHLIVCG-VELCAFLGMFE 63
+ SM +P+ +Y ++ P+ + L+ G +VH H+I G V+ +G
Sbjct: 300 MNSMIDVSPE----SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIG--- 352
Query: 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMIS 123
++ MY G + +FY + D+ ++ MI+
Sbjct: 353 ----------NGLVNMYAKCGSIADARRVFYFMTDKDSVS--------------WNSMIT 388
Query: 124 IKFEGNACVKRPVLDMFIKCGRMEMASGEF----EEKDFSNLSLLKHGKEIHPHHLKKDD 179
+ N C V + + R ++ G F ++L K G++IH LK
Sbjct: 389 -GLDQNGCFIEAV-ERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG- 445
Query: 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239
++ ++ V+N+LM YA+ YL FS + + VSWN+++ A R E +
Sbjct: 446 IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALA----RSERS---- 497
Query: 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299
A+ F + + N I+ S VL+A + + +LGK+IHG L+++I
Sbjct: 498 ---LPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATT 554
Query: 300 GIALISIQGL----------------GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343
ALI+ G + WNS+I Y + K +F +
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTG 614
Query: 344 EY-----------------NMEPAMEQYCC---------------MVDLLARAGQFDDTL 371
+ +E ME + C +VD+ ++ G+ D L
Sbjct: 615 QRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYAL 674
Query: 372 NFMKKMPFEPS 382
F MP S
Sbjct: 675 RFFNTMPVRNS 685
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 32/114 (28%)
Query: 8 LLLQSMDL------TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELC----- 56
LL +++DL T + YA + + LE G++VHA C V C
Sbjct: 599 LLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHA----CSVRACLESDV 654
Query: 57 ----AFLGMFEK-------------MPERNVFSWTSMMGMYNVLGYYEEIVNLF 93
A + M+ K MP RN +SW SM+ Y G EE + LF
Sbjct: 655 VVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLF 708
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 166/715 (23%), Positives = 272/715 (38%), Gaps = 222/715 (31%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVE----LCAFL----- 59
L + M + T + Q C G Q+H +++ G+E +C L
Sbjct: 76 LFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYS 135
Query: 60 ---------GMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110
+F M +RN+ SW S++ Y LGY ++ + L E++
Sbjct: 136 RNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLL------------DEMEI 183
Query: 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL-------SL 163
+ D+ + + + + + D RM++A + S+L
Sbjct: 184 CGLKPDIVTWNSLLSGYASKGLSK---DAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGH 240
Query: 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223
LK GK IH + L+ + L D+ V +L+D Y K YL A F + K++V+WN++++
Sbjct: 241 LKLGKAIHGYILR-NQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVS 299
Query: 224 GYALG----------------GFREEI-------TGFTQYGDGETALEFFSRMIQTDMQP 260
G + G + + +G+ G E AL+ +M + + P
Sbjct: 300 GLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAP 359
Query: 261 NTISLSGVLAACAQVKGFK-----------------------------------LGKEIH 285
N +S + + + C++ F+ GKE+H
Sbjct: 360 NVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVH 419
Query: 286 GYVLRHHIQLSTGVGIALISI--------------QGLGTGSFV-WNSLI---DMYGR-- 325
G+ LR ++ V AL+ + G+ S WN ++ M+GR
Sbjct: 420 GFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGE 479
Query: 326 ------------------------------CGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355
G +Q EGW+YF++M+ Y + P +E
Sbjct: 480 EGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQ--EGWKYFDLMRSRYGIIPTIEHCS 537
Query: 356 CMVDLLARAGQFDDTLNFMKKMPFEPSSA------EPC----NPDIAEHAARHLFELEPL 405
CMVDLL R+G D+ +F++ M +P + C + ++AE A + L LEP
Sbjct: 538 CMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH 597
Query: 406 SSGK-------------------------------------------VHSFIAGDTSHSL 422
+S VH F A +H
Sbjct: 598 NSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPD 657
Query: 423 VHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLALAFGLISTSPGS 468
I +L +L SE+KK GY+ K GH+EKLA+ +GLI +
Sbjct: 658 EGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKKKGLA 717
Query: 469 PLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDYW 523
P+RV+KN +C D H+ KY+S R REI++ + R HHF DG CSC D W
Sbjct: 718 PIRVVKNTNICSDSHTVAKYMSVL----RNREIVLQEGARVHHFRDGKCSCNDSW 768
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 84/321 (26%)
Query: 40 LGIQVHAHLIVCGVE---------------LCAFLG----MFEKMPERNVFSWTSMMGMY 80
LG+ +H LI G++ C LG +F++MP+R+ +W ++ +
Sbjct: 5 LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64
Query: 81 NVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130
G +E+ V LF + G + + CS + G+ ++ Y++ + E N
Sbjct: 65 LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124
Query: 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190
+ ++ M+ + G++E++ F NLS NS+
Sbjct: 125 SMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSW-----------------------NSI 161
Query: 191 MDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246
+ Y K Y+ A +++ + +V+WN++L+GYA G ++ A
Sbjct: 162 LSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKD------------A 209
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ RM ++P+T S+S +L A A+ KLGK IHGY+LR+ +
Sbjct: 210 IAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDV--------- 260
Query: 307 QGLGTGSFVWNSLIDMYGRCG 327
+V +LIDMY + G
Sbjct: 261 -------YVETTLIDMYIKTG 274
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 35/211 (16%)
Query: 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYA 226
G IH +K+ SD V ++ M FY +C L A+ F ++ ++ ++WN
Sbjct: 6 GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWN------- 58
Query: 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286
E + + G+ E A+E F M + + ++ +L C+ +GF G++IHG
Sbjct: 59 -----EIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHG 113
Query: 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
YVLR GL + + NSLI MY R G ++ + + F MK
Sbjct: 114 YVLR----------------LGLESNVSMCNSLIVMYSRNGKLELSR--KVFNSMK---- 151
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377
+ + + ++ + G DD + + +M
Sbjct: 152 -DRNLSSWNSILSSYTKLGYVDDAIGLLDEM 181
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 158/631 (25%), Positives = 245/631 (38%), Gaps = 231/631 (36%)
Query: 9 LLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG---------------- 52
+L S + PD TV + + Q C L E G+QVH I G
Sbjct: 97 ILSSGNDLKPDNYTVNF--LVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYA 154
Query: 53 --------------------------VELCAFLG-------MFEKMPERNVFSWTSMMGM 79
V CA G +FE MPER+ +W +M+
Sbjct: 155 ELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISG 214
Query: 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139
Y +G E +N+F+L+ EGV K + V MIS+ +AC
Sbjct: 215 YAQVGESREALNVFHLMQLEGV-------KVNGVA------MISVL---SAC-------- 250
Query: 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY 199
+ L L G+ H + ++++ ++ + + +L+D YAKC
Sbjct: 251 -------------------TQLGALDQGRWAHSY-IERNKIKITVRLATTLVDLYAKCGD 290
Query: 200 LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259
++ A F +++K++ +W++ L G A+ GF GE LE FS M Q +
Sbjct: 291 MEKAMEVFWGMEEKNVYTWSSALNGLAMNGF------------GEKCLELFSLMKQDGVT 338
Query: 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319
PN ++ VL C+ V G+V
Sbjct: 339 PNAVTFVSVLRGCSVV----------GFV------------------------------- 357
Query: 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPF 379
+EG R+F+ M+ E+ +EP +E Y C+VDL ARAG+ +D ++ +++MP
Sbjct: 358 ------------DEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPM 405
Query: 380 EPSSAEPC----------NPDIAEHAARHLFELEPLS----------------------- 406
+P +A N ++ A++ + ELE +
Sbjct: 406 KPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHV 465
Query: 407 --------------------SGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--- 443
+G+VH F GD SH +I + ++ GY
Sbjct: 466 RQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADT 525
Query: 444 -----------KRIPACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492
K C HSEK A+AFG++S P+R++KNLR+CGDCH + +SK
Sbjct: 526 TPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKI 585
Query: 493 EKREREREIIMIDNYRFHHFVDGACSCGDYW 523
REII+ D RFHHF DG CSC +W
Sbjct: 586 ----FNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 24/154 (15%)
Query: 244 ETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI 301
E + +F+ R++ + D++P+ +++ ++ AC ++ + G ++HG +R V
Sbjct: 88 EKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQT 147
Query: 302 ALISIQG----LGTGSFVWNS-----------LIDMYGRCGAIQKNEGWRYFEMMKKEYN 346
LIS+ L + V+NS ++ RCG + + FE M +
Sbjct: 148 GLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFAR--KLFEGMPER-- 203
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380
+P + M+ A+ G+ + LN M E
Sbjct: 204 -DPI--AWNAMISGYAQVGESREALNVFHLMQLE 234
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 176 bits (445), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 132/487 (27%), Positives = 203/487 (41%), Gaps = 137/487 (28%)
Query: 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215
K ++LS L+ GK +H H + D V +L+ FY+KC ++ A F ++ +K +
Sbjct: 115 KSCADLSALRIGKGVHCHAVV-SGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSI 173
Query: 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275
V+WN++ ++GF Q G + A++ F +M ++ +P++ + +L+ACAQ
Sbjct: 174 VAWNSL------------VSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQT 221
Query: 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG----LG-----------TGSFVWNSLI 320
LG +H Y++ + L+ +G ALI++ +G T W ++I
Sbjct: 222 GAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMI 281
Query: 321 DMYGR-----------------CGAIQKN-----------------EGWRYFEMMKKEYN 346
YG CG I N EG ++ M K Y
Sbjct: 282 SAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYR 341
Query: 347 MEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPC-------------NPDIAE 393
+ P +E + CMVD+L RAG D+ F+ ++ + P N D+
Sbjct: 342 LIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGV 401
Query: 394 HAARHLFELEPLSSG-------------------------------------------KV 410
A+ L LEP + G K
Sbjct: 402 EIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKT 461
Query: 411 HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM--------------KRIPACGHSEKLA 456
+ F GD SH +I L L S K+IGY K HSEKLA
Sbjct: 462 YMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLA 521
Query: 457 LAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGA 516
+AFGL+ T + + ++KNLR+C DCHS KY+S R+ I + D RFHHF +G+
Sbjct: 522 VAFGLLKTVDVA-ITIVKNLRICEDCHSAFKYISIVSNRQ----ITVRDKLRFHHFQNGS 576
Query: 517 CSCGDYW 523
CSC DYW
Sbjct: 577 CSCLDYW 583
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 28/175 (16%)
Query: 16 TNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--------------- 60
+N T+ + + C L+ L +G VH H +V G L ++
Sbjct: 101 SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEG 160
Query: 61 ---MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSE 107
+F++MPE+++ +W S++ + G +E + +FY + + G + AC++
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQ 220
Query: 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS 162
+G V+ Y+IS + N + +++++ +CG + A F++ +N++
Sbjct: 221 TGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVA 275
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 31/133 (23%)
Query: 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----------------- 60
PD + T+ + C + + LG VH ++I G++L LG
Sbjct: 206 PD--SATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263
Query: 61 -MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-----------GVYKACSEL 108
+F+KM E NV +WT+M+ Y GY ++ V LF + D+ V AC+
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323
Query: 109 KDHRVGKDVYDYM 121
G+ VY M
Sbjct: 324 GLVEEGRSVYKRM 336
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306
+ ++ RM+ +++ P+ + + V+ +CA + ++GK +H + + +
Sbjct: 92 VAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAV----------------V 135
Query: 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWR-YFEMMKKEYNMEPAMEQYCCMVDLLARAG 365
G G ++V +L+ Y +CG + EG R F+ M E ++ + +V + G
Sbjct: 136 SGFGLDTYVQAALVTFYSKCGDM---EGARQVFDRMP-----EKSIVAWNSLVSGFEQNG 187
Query: 366 QFDDTLNF---MKKMPFEPSSA 384
D+ + M++ FEP SA
Sbjct: 188 LADEAIQVFYQMRESGFEPDSA 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,146,708
Number of Sequences: 539616
Number of extensions: 8518630
Number of successful extensions: 23622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 19564
Number of HSP's gapped (non-prelim): 1738
length of query: 523
length of database: 191,569,459
effective HSP length: 122
effective length of query: 401
effective length of database: 125,736,307
effective search space: 50420259107
effective search space used: 50420259107
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)