Query 035847
Match_columns 523
No_of_seqs 440 out of 3933
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:58:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.2E-97 5E-102 821.8 50.9 500 2-521 167-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5.5E-94 1.2E-98 777.1 47.3 477 2-523 102-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-63 2.5E-68 552.8 32.6 489 2-516 66-677 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.1E-56 4.5E-61 488.2 40.6 372 20-446 435-847 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 3.4E-55 7.4E-60 478.7 38.4 392 2-446 452-915 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-52 6E-57 451.8 35.5 354 3-378 139-555 (697)
7 PF14432 DYW_deaminase: DYW fa 99.9 3.2E-25 7E-30 179.9 7.3 86 410-513 8-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.2E-18 4.8E-23 193.3 36.6 419 3-462 413-894 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 9.3E-18 2E-22 188.2 36.8 448 2-493 378-898 (899)
10 PRK11788 tetratricopeptide rep 99.8 2.3E-16 4.9E-21 160.1 28.5 277 32-377 45-344 (389)
11 PRK11788 tetratricopeptide rep 99.8 1.1E-16 2.3E-21 162.6 25.6 285 2-352 50-354 (389)
12 KOG4422 Uncharacterized conser 99.6 1.1E-12 2.4E-17 124.5 26.9 355 3-377 131-548 (625)
13 PRK15174 Vi polysaccharide exp 99.5 3.6E-11 7.8E-16 129.1 35.3 328 3-403 58-404 (656)
14 PRK15174 Vi polysaccharide exp 99.5 3.4E-11 7.3E-16 129.3 34.0 315 22-407 42-386 (656)
15 PRK11447 cellulose synthase su 99.5 6.5E-11 1.4E-15 135.6 34.1 384 3-446 285-747 (1157)
16 PRK10049 pgaA outer membrane p 99.5 4.2E-10 9.1E-15 123.4 37.2 369 3-408 31-462 (765)
17 PF13041 PPR_2: PPR repeat fam 99.5 1.3E-13 2.8E-18 94.9 6.0 50 213-274 1-50 (50)
18 TIGR00990 3a0801s09 mitochondr 99.5 1E-10 2.2E-15 125.6 30.9 376 3-432 143-567 (615)
19 PRK11447 cellulose synthase su 99.4 1.9E-10 4.2E-15 131.8 32.9 342 31-430 278-694 (1157)
20 PF13041 PPR_2: PPR repeat fam 99.4 3.6E-13 7.9E-18 92.7 5.4 50 311-363 1-50 (50)
21 PRK10049 pgaA outer membrane p 99.4 6E-10 1.3E-14 122.2 32.4 367 21-446 14-460 (765)
22 KOG4626 O-linked N-acetylgluco 99.4 4.3E-10 9.3E-15 111.7 26.7 335 21-408 115-491 (966)
23 KOG4626 O-linked N-acetylgluco 99.4 2.5E-10 5.5E-15 113.3 23.6 320 69-429 115-478 (966)
24 PRK14574 hmsH outer membrane p 99.3 1.6E-08 3.5E-13 109.6 34.7 243 25-291 38-356 (822)
25 PRK09782 bacteriophage N4 rece 99.2 1.2E-08 2.7E-13 112.7 32.2 381 3-407 163-711 (987)
26 TIGR00990 3a0801s09 mitochondr 99.2 2.9E-08 6.2E-13 106.8 34.4 321 2-377 175-568 (615)
27 KOG4318 Bicoid mRNA stability 99.2 4E-10 8.8E-15 116.1 17.7 274 8-372 11-292 (1088)
28 KOG4422 Uncharacterized conser 99.2 5.5E-09 1.2E-13 99.8 20.8 308 23-378 117-460 (625)
29 PRK10747 putative protoheme IX 99.2 7.5E-08 1.6E-12 97.6 30.0 270 35-376 97-386 (398)
30 PF13429 TPR_15: Tetratricopep 99.1 4.5E-10 9.7E-15 108.4 11.1 255 28-377 14-274 (280)
31 PRK14574 hmsH outer membrane p 99.1 2.5E-07 5.4E-12 100.5 32.8 167 184-384 327-518 (822)
32 PRK09782 bacteriophage N4 rece 99.1 2E-07 4.4E-12 103.2 30.5 220 109-384 490-711 (987)
33 PF13429 TPR_15: Tetratricopep 99.1 5.2E-10 1.1E-14 108.0 8.8 240 2-290 23-276 (280)
34 TIGR00540 hemY_coli hemY prote 99.0 4.3E-07 9.2E-12 92.5 29.1 273 34-376 96-395 (409)
35 PRK10747 putative protoheme IX 99.0 3.6E-07 7.8E-12 92.6 25.5 270 3-342 100-388 (398)
36 PF12854 PPR_1: PPR repeat 98.9 2E-09 4.3E-14 66.7 4.3 33 179-211 2-34 (34)
37 COG2956 Predicted N-acetylgluc 98.8 2.1E-06 4.5E-11 79.8 23.6 279 2-377 50-344 (389)
38 TIGR02521 type_IV_pilW type IV 98.8 4.5E-07 9.8E-12 84.1 19.9 189 70-290 31-231 (234)
39 PF12854 PPR_1: PPR repeat 98.8 6.9E-09 1.5E-13 64.3 4.4 33 346-378 2-34 (34)
40 TIGR02521 type_IV_pilW type IV 98.8 1E-06 2.2E-11 81.7 20.4 196 129-377 30-229 (234)
41 KOG1126 DNA-binding cell divis 98.8 1.4E-06 3.1E-11 88.2 21.4 285 2-381 334-622 (638)
42 TIGR00540 hemY_coli hemY prote 98.8 4.5E-06 9.7E-11 85.1 25.6 276 71-400 83-397 (409)
43 COG3071 HemY Uncharacterized e 98.8 6.4E-06 1.4E-10 78.9 24.5 262 74-376 86-386 (400)
44 KOG0495 HAT repeat protein [RN 98.7 4.4E-05 9.5E-10 77.4 30.6 353 101-492 412-826 (913)
45 KOG4318 Bicoid mRNA stability 98.7 2.2E-07 4.8E-12 96.4 14.5 250 116-446 11-271 (1088)
46 KOG2076 RNA polymerase III tra 98.7 1.9E-05 4.1E-10 82.9 27.7 306 31-400 149-510 (895)
47 KOG1126 DNA-binding cell divis 98.6 6.2E-06 1.4E-10 83.7 20.5 242 110-408 334-592 (638)
48 PRK12370 invasion protein regu 98.6 6.7E-06 1.5E-10 87.1 22.0 208 111-377 320-532 (553)
49 COG2956 Predicted N-acetylgluc 98.6 3.6E-05 7.9E-10 71.8 22.6 250 83-383 48-315 (389)
50 COG3071 HemY Uncharacterized e 98.5 0.00012 2.5E-09 70.4 25.4 225 69-350 152-395 (400)
51 KOG2002 TPR-containing nuclear 98.5 0.00012 2.5E-09 77.7 27.4 218 165-404 547-772 (1018)
52 KOG1915 Cell cycle control pro 98.5 0.00029 6.2E-09 69.1 28.0 362 3-427 89-527 (677)
53 KOG1840 Kinesin light chain [C 98.5 2E-05 4.3E-10 80.5 21.4 256 22-377 199-476 (508)
54 PRK12370 invasion protein regu 98.5 2.2E-05 4.8E-10 83.2 22.8 234 3-291 277-535 (553)
55 KOG1155 Anaphase-promoting com 98.5 0.00028 6E-09 69.1 27.2 181 186-400 332-534 (559)
56 KOG2003 TPR repeat-containing 98.5 0.00022 4.7E-09 69.3 25.6 166 196-377 502-686 (840)
57 KOG0495 HAT repeat protein [RN 98.4 0.00015 3.3E-09 73.6 24.3 76 11-97 468-543 (913)
58 KOG2002 TPR-containing nuclear 98.4 0.0018 4E-08 69.0 32.9 336 68-446 268-682 (1018)
59 KOG2076 RNA polymerase III tra 98.4 0.00032 6.9E-09 73.9 26.8 316 3-382 155-513 (895)
60 KOG1129 TPR repeat-containing 98.4 2.3E-05 5E-10 73.0 16.5 224 101-377 229-455 (478)
61 KOG1155 Anaphase-promoting com 98.4 0.0001 2.2E-09 72.0 21.6 193 131-377 331-533 (559)
62 KOG1840 Kinesin light chain [C 98.3 2.5E-05 5.5E-10 79.7 17.1 239 2-290 214-478 (508)
63 TIGR00756 PPR pentatricopeptid 98.3 7.8E-07 1.7E-11 55.6 3.6 35 216-262 1-35 (35)
64 KOG1915 Cell cycle control pro 98.3 0.00013 2.9E-09 71.3 19.4 220 108-349 86-354 (677)
65 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.6E-11 54.8 3.7 35 314-351 1-35 (35)
66 PRK11189 lipoprotein NlpI; Pro 98.2 0.00039 8.6E-09 67.5 21.7 189 131-377 65-262 (296)
67 PF13812 PPR_3: Pentatricopept 98.2 2.3E-06 5.1E-11 53.1 3.7 34 215-260 1-34 (34)
68 PRK11189 lipoprotein NlpI; Pro 98.1 0.00066 1.4E-08 65.9 22.1 185 71-292 65-266 (296)
69 PF12569 NARP1: NMDA receptor- 98.1 0.0013 2.8E-08 68.1 24.9 260 78-377 12-331 (517)
70 PF04733 Coatomer_E: Coatomer 98.1 6.1E-05 1.3E-09 72.4 14.2 155 137-344 109-265 (290)
71 KOG0547 Translocase of outer m 98.1 0.001 2.2E-08 65.6 22.1 191 236-431 335-561 (606)
72 PF13812 PPR_3: Pentatricopept 98.1 5E-06 1.1E-10 51.6 4.1 34 313-349 1-34 (34)
73 KOG2047 mRNA splicing factor [ 98.0 0.0024 5.2E-08 65.1 23.9 307 69-406 137-510 (835)
74 KOG2003 TPR repeat-containing 98.0 0.0011 2.3E-08 64.7 20.4 202 109-366 504-709 (840)
75 PF01535 PPR: PPR repeat; Int 98.0 6.3E-06 1.4E-10 49.9 3.1 30 71-100 1-30 (31)
76 KOG2047 mRNA splicing factor [ 98.0 0.011 2.4E-07 60.5 27.2 253 19-295 243-582 (835)
77 KOG1173 Anaphase-promoting com 98.0 0.0016 3.5E-08 65.4 20.7 226 3-273 260-533 (611)
78 KOG1129 TPR repeat-containing 98.0 0.00022 4.7E-09 66.7 13.7 216 179-429 218-451 (478)
79 cd05804 StaR_like StaR_like; a 98.0 0.0078 1.7E-07 60.1 26.6 88 136-255 120-214 (355)
80 PF01535 PPR: PPR repeat; Int 97.9 8.9E-06 1.9E-10 49.2 2.9 31 216-258 1-31 (31)
81 KOG1070 rRNA processing protei 97.9 0.00014 3.1E-09 79.6 13.8 196 212-446 1454-1669(1710)
82 KOG1174 Anaphase-promoting com 97.9 0.023 4.9E-07 55.3 26.9 233 179-455 227-480 (564)
83 KOG1156 N-terminal acetyltrans 97.9 0.013 2.8E-07 60.1 26.3 307 34-377 53-431 (700)
84 KOG2376 Signal recognition par 97.9 0.011 2.5E-07 59.8 25.6 109 28-155 18-135 (652)
85 KOG3785 Uncharacterized conser 97.9 0.003 6.4E-08 60.0 19.8 165 234-405 292-493 (557)
86 PF12569 NARP1: NMDA receptor- 97.8 0.0018 4E-08 67.0 18.9 225 138-400 12-289 (517)
87 PF06239 ECSIT: Evolutionarily 97.8 0.00053 1.2E-08 61.0 12.8 137 258-400 43-196 (228)
88 KOG2376 Signal recognition par 97.8 0.058 1.3E-06 54.9 28.9 343 3-382 95-522 (652)
89 PF04733 Coatomer_E: Coatomer 97.8 0.0011 2.3E-08 63.8 15.8 157 183-378 101-263 (290)
90 COG3063 PilF Tfp pilus assembl 97.7 0.0073 1.6E-07 54.2 19.1 180 79-290 44-235 (250)
91 KOG0547 Translocase of outer m 97.7 0.021 4.5E-07 56.8 23.8 219 109-377 340-563 (606)
92 KOG1914 mRNA cleavage and poly 97.7 0.031 6.6E-07 56.3 24.7 167 179-377 362-536 (656)
93 KOG3616 Selective LIM binding 97.7 0.0024 5.3E-08 65.8 16.9 112 234-377 739-850 (1636)
94 KOG1914 mRNA cleavage and poly 97.6 0.095 2.1E-06 52.9 26.4 131 243-377 347-498 (656)
95 KOG1070 rRNA processing protei 97.6 0.013 2.8E-07 65.0 21.9 230 20-290 1455-1699(1710)
96 PF08579 RPM2: Mitochondrial r 97.6 0.0015 3.2E-08 51.8 10.7 82 236-363 34-116 (120)
97 COG3063 PilF Tfp pilus assembl 97.5 0.026 5.6E-07 50.8 19.6 187 133-373 38-229 (250)
98 KOG3616 Selective LIM binding 97.5 0.013 2.7E-07 60.8 19.5 154 101-287 738-907 (1636)
99 KOG3785 Uncharacterized conser 97.5 0.0084 1.8E-07 57.0 16.3 182 76-291 291-490 (557)
100 TIGR03302 OM_YfiO outer membra 97.5 0.0081 1.8E-07 56.1 16.9 182 182-378 31-230 (235)
101 KOG1174 Anaphase-promoting com 97.5 0.072 1.6E-06 52.0 22.7 256 68-383 230-504 (564)
102 KOG1173 Anaphase-promoting com 97.4 0.074 1.6E-06 54.0 23.5 243 78-360 252-531 (611)
103 COG4783 Putative Zn-dependent 97.4 0.0065 1.4E-07 60.3 15.9 146 71-265 308-462 (484)
104 KOG4340 Uncharacterized conser 97.4 0.066 1.4E-06 50.0 21.0 70 15-98 3-72 (459)
105 TIGR03302 OM_YfiO outer membra 97.3 0.0083 1.8E-07 56.0 15.4 173 68-291 31-232 (235)
106 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0061 1.3E-07 60.8 14.9 120 236-381 178-298 (395)
107 PRK04841 transcriptional regul 97.3 0.19 4.2E-06 57.0 28.5 299 30-377 417-757 (903)
108 PLN02789 farnesyltranstransfer 97.3 0.09 2E-06 51.4 22.2 217 84-364 34-268 (320)
109 KOG3081 Vesicle coat complex C 97.3 0.019 4.1E-07 52.7 15.7 144 115-292 93-237 (299)
110 PRK10370 formate-dependent nit 97.3 0.011 2.3E-07 53.7 14.5 153 77-266 23-182 (198)
111 KOG1128 Uncharacterized conser 97.2 0.0083 1.8E-07 62.3 14.5 228 74-362 402-634 (777)
112 PF06239 ECSIT: Evolutionarily 97.2 0.0018 4E-08 57.7 8.6 118 127-290 44-167 (228)
113 KOG0985 Vesicle coat protein c 97.2 0.19 4.1E-06 54.5 24.1 190 68-329 982-1182(1666)
114 PRK15179 Vi polysaccharide bio 97.1 0.044 9.5E-07 59.2 19.7 184 69-291 27-217 (694)
115 KOG3617 WD40 and TPR repeat-co 97.1 0.075 1.6E-06 56.1 20.1 127 21-155 756-883 (1416)
116 cd05804 StaR_like StaR_like; a 97.1 0.047 1E-06 54.4 19.0 198 132-377 8-212 (355)
117 KOG1128 Uncharacterized conser 97.0 0.021 4.5E-07 59.5 15.4 209 101-377 404-613 (777)
118 PF10037 MRP-S27: Mitochondria 97.0 0.0032 6.9E-08 63.1 9.5 111 68-197 64-186 (429)
119 KOG4162 Predicted calmodulin-b 97.0 0.65 1.4E-05 49.1 28.7 407 4-472 244-794 (799)
120 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.015 3.2E-07 58.1 13.5 126 185-343 170-296 (395)
121 KOG0985 Vesicle coat protein c 97.0 0.59 1.3E-05 50.9 25.3 245 70-374 1104-1377(1666)
122 KOG0548 Molecular co-chaperone 97.0 0.18 3.9E-06 50.9 20.5 95 31-140 11-114 (539)
123 COG5010 TadD Flp pilus assembl 97.0 0.032 6.9E-07 51.2 14.1 129 127-288 97-228 (257)
124 COG5010 TadD Flp pilus assembl 96.9 0.061 1.3E-06 49.4 15.6 156 188-377 70-228 (257)
125 KOG1125 TPR repeat-containing 96.9 0.064 1.4E-06 54.5 17.0 202 34-290 297-526 (579)
126 PRK15359 type III secretion sy 96.9 0.012 2.6E-07 50.3 10.6 100 133-266 27-129 (144)
127 KOG3617 WD40 and TPR repeat-co 96.9 0.17 3.6E-06 53.7 20.2 224 21-342 725-994 (1416)
128 TIGR02552 LcrH_SycD type III s 96.9 0.012 2.5E-07 49.6 10.3 104 130-267 17-123 (135)
129 PRK10370 formate-dependent nit 96.8 0.025 5.4E-07 51.2 12.8 99 68-212 71-172 (198)
130 PRK15359 type III secretion sy 96.8 0.0079 1.7E-07 51.4 9.0 102 73-220 27-130 (144)
131 PF08579 RPM2: Mitochondrial r 96.8 0.0056 1.2E-07 48.5 7.0 70 108-196 38-116 (120)
132 COG4783 Putative Zn-dependent 96.8 0.072 1.6E-06 53.2 16.2 140 162-354 320-462 (484)
133 PF10037 MRP-S27: Mitochondria 96.8 0.011 2.4E-07 59.4 10.8 92 101-211 72-165 (429)
134 PF05843 Suf: Suppressor of fo 96.7 0.011 2.3E-07 56.8 10.1 132 71-223 2-148 (280)
135 PRK04841 transcriptional regul 96.7 0.91 2E-05 51.6 27.3 260 31-344 461-760 (903)
136 PF12921 ATP13: Mitochondrial 96.7 0.012 2.5E-07 48.8 8.8 99 261-363 1-100 (126)
137 PF09976 TPR_21: Tetratricopep 96.7 0.037 8.1E-07 47.3 12.3 117 71-209 13-143 (145)
138 cd00189 TPR Tetratricopeptide 96.6 0.015 3.2E-07 44.4 8.4 93 73-211 3-95 (100)
139 TIGR02552 LcrH_SycD type III s 96.6 0.018 3.8E-07 48.5 9.3 98 69-212 16-113 (135)
140 KOG3941 Intermediate in Toll s 96.5 0.1 2.2E-06 48.4 14.0 133 201-378 51-186 (406)
141 PRK15179 Vi polysaccharide bio 96.5 0.075 1.6E-06 57.4 15.5 66 21-100 85-150 (694)
142 PF04840 Vps16_C: Vps16, C-ter 96.5 0.62 1.3E-05 45.5 20.2 79 191-287 184-262 (319)
143 PF09976 TPR_21: Tetratricopep 96.4 0.1 2.3E-06 44.5 13.4 121 236-376 21-143 (145)
144 PRK14720 transcript cleavage f 96.4 0.94 2E-05 50.0 23.3 275 67-408 28-312 (906)
145 PRK14720 transcript cleavage f 96.4 0.16 3.5E-06 55.7 17.5 233 17-253 25-303 (906)
146 KOG1127 TPR repeat-containing 96.3 0.83 1.8E-05 49.8 21.0 156 86-255 474-658 (1238)
147 PLN02789 farnesyltranstransfer 96.2 1.1 2.3E-05 43.9 20.6 199 28-274 43-267 (320)
148 KOG4340 Uncharacterized conser 96.2 0.17 3.6E-06 47.4 13.9 263 2-288 25-336 (459)
149 cd00189 TPR Tetratricopeptide 96.2 0.033 7.2E-07 42.3 8.1 91 133-255 3-96 (100)
150 PF05843 Suf: Suppressor of fo 96.1 0.042 9E-07 52.8 10.0 143 131-307 2-150 (280)
151 KOG2053 Mitochondrial inherita 96.0 3 6.4E-05 45.2 26.4 60 316-378 439-500 (932)
152 PF04840 Vps16_C: Vps16, C-ter 95.8 2.1 4.5E-05 41.8 22.9 103 236-377 186-288 (319)
153 COG3898 Uncharacterized membra 95.8 1.4 3E-05 43.1 18.3 71 83-155 133-213 (531)
154 PRK10866 outer membrane biogen 95.8 0.84 1.8E-05 42.8 17.0 180 77-289 39-239 (243)
155 PF14938 SNAP: Soluble NSF att 95.8 0.38 8.1E-06 46.3 15.1 156 185-377 95-263 (282)
156 KOG3081 Vesicle coat complex C 95.8 0.45 9.7E-06 44.0 14.2 119 189-343 113-235 (299)
157 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.13 2.8E-06 41.7 10.2 95 132-257 4-106 (119)
158 KOG2796 Uncharacterized conser 95.7 0.24 5.2E-06 45.6 12.3 137 101-270 183-327 (366)
159 KOG4162 Predicted calmodulin-b 95.7 3.7 8.1E-05 43.7 23.0 90 314-408 685-789 (799)
160 TIGR02795 tol_pal_ybgF tol-pal 95.6 0.16 3.6E-06 41.1 10.4 84 72-155 4-101 (119)
161 PF14559 TPR_19: Tetratricopep 95.6 0.038 8.3E-07 40.0 5.8 63 141-223 2-66 (68)
162 KOG1125 TPR repeat-containing 95.5 0.38 8.3E-06 49.1 14.1 223 108-376 298-523 (579)
163 PF14938 SNAP: Soluble NSF att 95.4 2.7 5.8E-05 40.4 19.6 119 236-383 103-229 (282)
164 PF03704 BTAD: Bacterial trans 95.4 0.12 2.5E-06 44.2 9.0 72 101-187 68-139 (146)
165 PF12921 ATP13: Mitochondrial 95.3 0.088 1.9E-06 43.6 7.5 94 183-304 1-95 (126)
166 PF14559 TPR_19: Tetratricopep 95.2 0.051 1.1E-06 39.3 5.3 46 109-155 5-50 (68)
167 PLN03088 SGT1, suppressor of 94.8 0.23 5.1E-06 49.5 10.5 101 138-272 10-113 (356)
168 KOG1156 N-terminal acetyltrans 94.7 6.5 0.00014 41.2 27.5 98 259-378 366-466 (700)
169 PF12895 Apc3: Anaphase-promot 94.5 0.1 2.2E-06 39.8 5.7 80 143-252 2-83 (84)
170 KOG1538 Uncharacterized conser 94.4 4.3 9.3E-05 42.4 18.0 183 80-293 655-848 (1081)
171 KOG0624 dsRNA-activated protei 94.3 5.4 0.00012 38.5 20.8 255 136-433 44-333 (504)
172 KOG0624 dsRNA-activated protei 94.3 5.4 0.00012 38.5 17.3 187 79-289 115-334 (504)
173 PRK02603 photosystem I assembl 94.3 0.61 1.3E-05 41.1 10.9 64 23-98 36-100 (172)
174 PF12895 Apc3: Anaphase-promot 94.2 0.09 1.9E-06 40.0 4.6 80 109-209 3-83 (84)
175 CHL00033 ycf3 photosystem I as 94.1 0.66 1.4E-05 40.6 10.8 94 70-208 35-137 (168)
176 PRK02603 photosystem I assembl 94.1 0.62 1.4E-05 41.0 10.5 62 69-155 34-97 (172)
177 CHL00033 ycf3 photosystem I as 94.0 1.5 3.2E-05 38.4 12.7 115 243-376 15-138 (168)
178 PLN03088 SGT1, suppressor of 93.9 0.47 1E-05 47.3 10.5 84 32-155 12-95 (356)
179 PRK10153 DNA-binding transcrip 93.9 0.57 1.2E-05 49.0 11.4 71 182-266 418-490 (517)
180 PF09205 DUF1955: Domain of un 93.9 1.6 3.4E-05 36.0 11.1 73 221-294 75-152 (161)
181 KOG2041 WD40 repeat protein [G 93.5 12 0.00025 39.7 20.6 263 70-368 796-1074(1189)
182 PF12688 TPR_5: Tetratrico pep 93.5 0.67 1.5E-05 38.0 8.8 98 105-223 11-114 (120)
183 PF07079 DUF1347: Protein of u 93.5 6.8 0.00015 39.3 16.9 141 141-307 17-177 (549)
184 KOG1538 Uncharacterized conser 93.5 0.88 1.9E-05 47.2 11.3 199 10-257 623-847 (1081)
185 PF13525 YfiO: Outer membrane 93.4 0.67 1.5E-05 42.1 9.7 47 236-282 150-198 (203)
186 PRK15363 pathogenicity island 93.2 1.5 3.3E-05 37.5 10.7 80 75-155 40-128 (157)
187 KOG2053 Mitochondrial inherita 93.0 16 0.00035 39.9 19.9 101 174-290 35-138 (932)
188 PRK10866 outer membrane biogen 92.9 7.3 0.00016 36.4 16.0 184 137-377 39-238 (243)
189 PF03704 BTAD: Bacterial trans 92.7 0.27 5.9E-06 41.9 5.8 70 185-266 63-140 (146)
190 COG5107 RNA14 Pre-mRNA 3'-end 92.7 2.1 4.5E-05 42.7 12.0 143 130-307 397-545 (660)
191 PF07079 DUF1347: Protein of u 92.7 12 0.00027 37.6 26.3 124 3-144 22-181 (549)
192 PF12688 TPR_5: Tetratrico pep 92.6 1.2 2.5E-05 36.6 8.9 76 78-155 9-100 (120)
193 PF13424 TPR_12: Tetratricopep 92.4 0.39 8.4E-06 35.8 5.6 61 314-376 6-71 (78)
194 PF13432 TPR_16: Tetratricopep 92.0 0.68 1.5E-05 33.0 6.4 56 136-211 3-58 (65)
195 PF13414 TPR_11: TPR repeat; P 91.9 0.28 6E-06 35.5 4.2 61 69-155 2-63 (69)
196 PRK15363 pathogenicity island 91.9 3.7 8E-05 35.2 11.4 90 189-291 40-132 (157)
197 PF13432 TPR_16: Tetratricopep 91.8 0.31 6.7E-06 34.8 4.3 48 107-155 9-56 (65)
198 PRK10153 DNA-binding transcrip 91.8 4.8 0.0001 42.3 14.7 141 212-384 334-487 (517)
199 COG5107 RNA14 Pre-mRNA 3'-end 91.2 18 0.00039 36.4 23.6 112 261-376 396-527 (660)
200 KOG3941 Intermediate in Toll s 91.0 0.62 1.4E-05 43.4 6.2 101 108-211 85-186 (406)
201 PF13424 TPR_12: Tetratricopep 90.9 0.47 1E-05 35.3 4.7 64 131-209 6-71 (78)
202 KOG1127 TPR repeat-containing 90.9 30 0.00066 38.4 20.7 144 114-290 475-624 (1238)
203 PLN03098 LPA1 LOW PSII ACCUMUL 90.7 2.1 4.6E-05 43.1 10.1 111 69-213 74-195 (453)
204 PF13170 DUF4003: Protein of u 90.5 3.8 8.3E-05 39.5 11.6 122 3-136 78-223 (297)
205 smart00299 CLH Clathrin heavy 90.4 9.7 0.00021 31.9 13.6 84 23-121 8-95 (140)
206 KOG3060 Uncharacterized conser 90.0 15 0.00033 34.0 14.0 128 126-290 47-182 (289)
207 KOG2796 Uncharacterized conser 89.5 17 0.00036 34.0 13.9 184 168-384 125-320 (366)
208 PF13414 TPR_11: TPR repeat; P 89.0 1.6 3.5E-05 31.3 6.2 60 312-376 2-63 (69)
209 PF08631 SPO22: Meiosis protei 88.9 22 0.00048 34.0 21.7 232 107-375 5-270 (278)
210 PHA02875 ankyrin repeat protei 88.8 28 0.0006 35.4 17.3 198 8-263 16-231 (413)
211 PRK10803 tol-pal system protei 88.6 3.7 8.1E-05 38.9 9.8 96 184-291 143-246 (263)
212 PF13371 TPR_9: Tetratricopept 88.4 1.5 3.2E-05 32.0 5.6 50 105-155 5-54 (73)
213 PF04053 Coatomer_WDAD: Coatom 88.4 10 0.00023 38.8 13.5 133 130-340 295-427 (443)
214 KOG0553 TPR repeat-containing 88.4 2.7 6E-05 39.7 8.4 123 245-404 76-200 (304)
215 KOG2280 Vacuolar assembly/sort 87.9 43 0.00093 36.0 20.5 69 21-98 506-574 (829)
216 PF07035 Mic1: Colon cancer-as 87.7 17 0.00037 31.6 12.4 134 116-292 15-150 (167)
217 PF04053 Coatomer_WDAD: Coatom 87.1 3.2 7E-05 42.5 8.9 133 70-252 295-427 (443)
218 smart00299 CLH Clathrin heavy 86.8 17 0.00037 30.4 13.9 16 128-143 39-54 (140)
219 PF13170 DUF4003: Protein of u 86.5 8.2 0.00018 37.3 10.9 25 332-357 199-223 (297)
220 KOG3060 Uncharacterized conser 86.4 28 0.00061 32.4 17.5 155 101-291 58-220 (289)
221 PLN03098 LPA1 LOW PSII ACCUMUL 86.4 4.8 0.0001 40.7 9.3 95 183-293 74-176 (453)
222 KOG0553 TPR repeat-containing 86.3 13 0.00027 35.4 11.4 112 88-223 76-190 (304)
223 TIGR02508 type_III_yscG type I 86.2 8.7 0.00019 30.0 8.5 62 190-266 45-106 (115)
224 PRK10803 tol-pal system protei 85.8 6.2 0.00014 37.4 9.5 89 314-407 144-251 (263)
225 PF13371 TPR_9: Tetratricopept 84.8 2.7 5.9E-05 30.5 5.4 56 30-99 3-58 (73)
226 COG3629 DnrI DNA-binding trans 84.7 5.4 0.00012 37.8 8.4 76 184-271 153-236 (280)
227 PF13762 MNE1: Mitochondrial s 84.5 20 0.00044 30.3 10.8 100 253-365 28-129 (145)
228 PF13762 MNE1: Mitochondrial s 84.3 10 0.00023 32.0 9.1 92 175-278 28-131 (145)
229 KOG1130 Predicted G-alpha GTPa 83.9 31 0.00068 34.4 13.2 266 79-376 26-340 (639)
230 PF00637 Clathrin: Region in C 83.3 2.1 4.6E-05 36.1 4.8 55 101-155 13-67 (143)
231 COG3629 DnrI DNA-binding trans 83.3 7.4 0.00016 37.0 8.7 78 101-193 159-236 (280)
232 COG4649 Uncharacterized protei 82.5 26 0.00056 30.6 10.7 122 71-212 60-195 (221)
233 PF07035 Mic1: Colon cancer-as 81.7 35 0.00075 29.7 12.5 103 246-377 13-115 (167)
234 COG4235 Cytochrome c biogenesi 81.0 23 0.0005 33.7 10.9 97 214-343 155-255 (287)
235 KOG4570 Uncharacterized conser 80.9 5.5 0.00012 38.0 6.7 98 179-292 59-165 (418)
236 PHA02875 ankyrin repeat protei 80.8 20 0.00044 36.4 11.8 66 122-210 22-91 (413)
237 COG4235 Cytochrome c biogenesi 80.8 14 0.0003 35.1 9.4 87 68-155 154-252 (287)
238 KOG4570 Uncharacterized conser 80.6 5.3 0.00012 38.1 6.5 94 62-155 56-160 (418)
239 PF13512 TPR_18: Tetratricopep 80.4 5.6 0.00012 33.5 6.0 124 314-445 12-137 (142)
240 COG3898 Uncharacterized membra 80.2 66 0.0014 32.0 21.1 106 180-296 183-297 (531)
241 KOG2041 WD40 repeat protein [G 80.0 30 0.00065 36.8 12.1 79 68-155 690-785 (1189)
242 PF10300 DUF3808: Protein of u 79.7 52 0.0011 34.2 14.3 164 188-378 192-374 (468)
243 cd00923 Cyt_c_Oxidase_Va Cytoc 79.7 6.5 0.00014 30.5 5.6 44 112-155 24-67 (103)
244 KOG2114 Vacuolar assembly/sort 79.1 17 0.00038 39.3 10.4 72 83-155 381-456 (933)
245 TIGR02561 HrpB1_HrpK type III 78.8 25 0.00054 29.9 9.3 74 185-275 8-89 (153)
246 PF13176 TPR_7: Tetratricopept 78.4 3.2 7E-05 25.5 3.2 26 72-97 1-26 (36)
247 PF08631 SPO22: Meiosis protei 78.0 66 0.0014 30.7 21.4 244 32-341 3-272 (278)
248 PF10300 DUF3808: Protein of u 77.9 66 0.0014 33.4 14.4 155 101-290 194-375 (468)
249 KOG2114 Vacuolar assembly/sort 77.5 80 0.0017 34.6 14.6 179 132-379 336-518 (933)
250 PF09205 DUF1955: Domain of un 77.4 41 0.00088 28.0 12.1 132 35-210 15-146 (161)
251 KOG2280 Vacuolar assembly/sort 77.3 1.1E+02 0.0024 33.1 18.5 104 248-380 669-773 (829)
252 PF04190 DUF410: Protein of un 77.1 67 0.0015 30.4 14.9 75 182-256 88-170 (260)
253 PF13176 TPR_7: Tetratricopept 76.9 4.7 0.0001 24.8 3.6 24 353-376 1-24 (36)
254 PF02284 COX5A: Cytochrome c o 76.7 5.6 0.00012 31.2 4.6 60 113-192 28-87 (108)
255 PHA03100 ankyrin repeat protei 76.5 89 0.0019 32.4 15.3 87 188-296 216-310 (480)
256 KOG0548 Molecular co-chaperone 75.9 1E+02 0.0022 31.9 23.7 77 3-95 18-95 (539)
257 COG4105 ComL DNA uptake lipopr 75.5 71 0.0015 29.8 15.2 54 236-290 176-232 (254)
258 COG1729 Uncharacterized protei 75.4 32 0.00069 32.3 10.0 89 24-124 144-244 (262)
259 PF02259 FAT: FAT domain; Int 75.1 87 0.0019 30.7 14.2 82 293-377 118-210 (352)
260 PF13281 DUF4071: Domain of un 75.0 94 0.002 31.0 17.7 76 189-272 146-227 (374)
261 COG4700 Uncharacterized protei 73.5 66 0.0014 28.6 13.6 132 213-376 87-218 (251)
262 PF10602 RPN7: 26S proteasome 72.8 44 0.00096 29.4 10.1 83 71-155 37-138 (177)
263 cd00923 Cyt_c_Oxidase_Va Cytoc 72.7 22 0.00048 27.6 6.8 49 242-290 22-70 (103)
264 PRK09687 putative lyase; Provi 72.4 93 0.002 29.8 23.7 227 67-361 34-277 (280)
265 PF09613 HrpB1_HrpK: Bacterial 72.1 30 0.00065 29.8 8.3 74 184-273 7-88 (160)
266 PF13281 DUF4071: Domain of un 71.9 1.1E+02 0.0024 30.5 16.8 65 77-141 148-228 (374)
267 PF00637 Clathrin: Region in C 71.4 1.6 3.5E-05 36.9 0.6 87 134-254 11-97 (143)
268 PRK15331 chaperone protein Sic 70.9 22 0.00047 30.8 7.3 76 79-155 46-130 (165)
269 COG1729 Uncharacterized protei 69.7 76 0.0016 29.9 11.1 98 263-377 143-241 (262)
270 PF13428 TPR_14: Tetratricopep 67.5 10 0.00023 24.4 3.7 28 72-99 3-30 (44)
271 KOG0543 FKBP-type peptidyl-pro 67.4 52 0.0011 32.8 9.9 130 138-290 216-354 (397)
272 COG3947 Response regulator con 67.2 1.2E+02 0.0026 29.0 12.9 152 1-155 147-338 (361)
273 PF02284 COX5A: Cytochrome c o 67.2 33 0.00072 27.0 6.8 48 243-290 26-73 (108)
274 PRK11906 transcriptional regul 66.9 92 0.002 31.8 11.8 145 71-252 252-432 (458)
275 PF02259 FAT: FAT domain; Int 66.8 1.3E+02 0.0029 29.4 14.1 92 179-291 117-213 (352)
276 KOG4555 TPR repeat-containing 66.6 50 0.0011 27.4 8.1 81 31-125 52-145 (175)
277 PF04184 ST7: ST7 protein; In 66.2 1.7E+02 0.0036 30.3 13.7 134 239-378 180-322 (539)
278 PF13374 TPR_10: Tetratricopep 64.5 11 0.00024 23.4 3.5 28 71-98 3-30 (42)
279 PF14853 Fis1_TPR_C: Fis1 C-te 64.4 25 0.00055 24.0 5.2 21 387-407 15-35 (53)
280 KOG1920 IkappaB kinase complex 64.3 2.7E+02 0.0059 32.1 16.6 24 74-97 794-819 (1265)
281 PRK12356 glutaminase; Reviewed 63.6 1.5E+02 0.0032 28.9 12.6 180 179-401 93-304 (319)
282 PF13374 TPR_10: Tetratricopep 63.5 14 0.00031 22.9 3.8 27 351-377 2-28 (42)
283 PF13428 TPR_14: Tetratricopep 63.0 14 0.0003 23.8 3.7 28 315-344 3-30 (44)
284 PRK15331 chaperone protein Sic 62.0 85 0.0018 27.2 9.1 87 105-212 47-133 (165)
285 KOG0276 Vesicle coat complex C 60.9 79 0.0017 33.3 10.1 103 236-378 646-748 (794)
286 KOG0550 Molecular chaperone (D 60.9 1.9E+02 0.0041 29.2 16.0 161 192-382 177-353 (486)
287 TIGR02561 HrpB1_HrpK type III 59.8 1.1E+02 0.0024 26.1 9.3 62 142-226 22-87 (153)
288 TIGR02508 type_III_yscG type I 59.4 58 0.0013 25.6 6.8 51 236-292 48-98 (115)
289 PF11207 DUF2989: Protein of u 59.3 39 0.00085 30.3 6.8 81 192-282 115-198 (203)
290 PF09477 Type_III_YscG: Bacter 59.2 74 0.0016 25.4 7.5 68 183-265 39-106 (116)
291 PF04184 ST7: ST7 protein; In 59.2 1.8E+02 0.0039 30.1 12.1 70 136-223 265-339 (539)
292 PF07721 TPR_4: Tetratricopept 59.1 19 0.00041 20.1 3.3 24 186-209 3-26 (26)
293 PF13929 mRNA_stabil: mRNA sta 59.0 1.4E+02 0.003 28.6 10.7 121 239-376 140-263 (292)
294 PF10366 Vps39_1: Vacuolar sor 58.3 68 0.0015 25.6 7.6 55 188-255 3-67 (108)
295 TIGR03504 FimV_Cterm FimV C-te 57.9 23 0.0005 23.1 3.9 26 268-293 5-30 (44)
296 COG1747 Uncharacterized N-term 57.0 2E+02 0.0044 29.8 12.0 30 71-100 67-96 (711)
297 KOG4555 TPR repeat-containing 55.9 63 0.0014 26.9 6.9 90 192-293 51-146 (175)
298 PF09613 HrpB1_HrpK: Bacterial 55.2 1.4E+02 0.003 25.8 10.4 61 140-223 20-84 (160)
299 PF13929 mRNA_stabil: mRNA sta 54.1 2.1E+02 0.0045 27.5 12.0 55 101-155 208-263 (292)
300 COG3118 Thioredoxin domain-con 53.4 2.1E+02 0.0046 27.4 11.9 139 193-365 143-286 (304)
301 PF00515 TPR_1: Tetratricopept 53.2 22 0.00048 21.0 3.2 28 71-98 2-29 (34)
302 PF11663 Toxin_YhaV: Toxin wit 53.0 31 0.00067 28.7 4.7 34 409-446 94-130 (140)
303 KOG1585 Protein required for f 52.7 2E+02 0.0043 26.9 13.5 198 18-250 23-250 (308)
304 PF10602 RPN7: 26S proteasome 52.5 50 0.0011 29.1 6.6 61 314-377 37-99 (177)
305 KOG2610 Uncharacterized conser 52.3 21 0.00045 34.6 4.2 79 326-408 116-210 (491)
306 PF13512 TPR_18: Tetratricopep 51.8 1.5E+02 0.0032 25.1 11.7 72 70-142 11-94 (142)
307 KOG2610 Uncharacterized conser 51.6 2.5E+02 0.0053 27.6 12.8 146 83-262 116-283 (491)
308 KOG0543 FKBP-type peptidyl-pro 51.3 1.5E+02 0.0032 29.7 10.0 19 79-97 217-235 (397)
309 TIGR03814 Gln_ase glutaminase 51.3 2.4E+02 0.0051 27.3 12.5 179 179-401 81-293 (300)
310 PF11663 Toxin_YhaV: Toxin wit 51.2 18 0.00039 30.0 3.2 32 239-272 107-138 (140)
311 PF13525 YfiO: Outer membrane 50.9 1.9E+02 0.004 26.0 17.0 177 139-371 14-198 (203)
312 PF13431 TPR_17: Tetratricopep 50.7 17 0.00038 21.9 2.4 24 127-150 10-33 (34)
313 PF11207 DUF2989: Protein of u 49.8 91 0.002 28.1 7.6 76 4-90 123-198 (203)
314 PF11848 DUF3368: Domain of un 49.5 48 0.001 22.0 4.5 32 239-270 14-45 (48)
315 PF11846 DUF3366: Domain of un 49.0 53 0.0012 29.3 6.4 46 332-377 125-170 (193)
316 COG4700 Uncharacterized protei 48.5 2E+02 0.0044 25.7 14.9 125 126-285 85-216 (251)
317 KOG1550 Extracellular protein 47.9 3.7E+02 0.0081 28.6 16.1 177 86-297 228-432 (552)
318 PF13934 ELYS: Nuclear pore co 47.8 2.3E+02 0.0049 26.1 11.3 122 217-381 78-202 (226)
319 COG3947 Response regulator con 47.1 2.7E+02 0.0059 26.8 14.4 173 112-300 150-356 (361)
320 KOG0403 Neoplastic transformat 45.7 3.5E+02 0.0076 27.7 12.9 138 73-211 217-372 (645)
321 KOG1920 IkappaB kinase complex 45.2 5.5E+02 0.012 29.8 20.0 32 18-50 787-820 (1265)
322 KOG4077 Cytochrome c oxidase, 45.0 72 0.0016 26.3 5.6 59 113-191 67-125 (149)
323 smart00804 TAP_C C-terminal do 45.0 19 0.00041 25.6 2.1 23 1-23 39-62 (63)
324 COG3118 Thioredoxin domain-con 44.9 2.9E+02 0.0063 26.5 13.5 107 32-155 144-261 (304)
325 PF08967 DUF1884: Domain of un 44.6 27 0.00057 26.0 2.8 28 421-448 5-32 (85)
326 PF10579 Rapsyn_N: Rapsyn N-te 44.3 60 0.0013 24.2 4.7 43 332-374 23-66 (80)
327 PF03943 TAP_C: TAP C-terminal 44.1 16 0.00036 24.6 1.6 23 1-23 27-50 (51)
328 KOG0276 Vesicle coat complex C 42.9 2E+02 0.0043 30.5 9.6 82 68-155 664-746 (794)
329 COG4455 ImpE Protein of avirul 42.7 1.4E+02 0.0031 27.3 7.6 78 73-193 4-81 (273)
330 PF14689 SPOB_a: Sensor_kinase 41.8 59 0.0013 22.9 4.3 43 332-377 7-49 (62)
331 COG1747 Uncharacterized N-term 41.5 4.4E+02 0.0095 27.6 17.6 182 19-223 63-247 (711)
332 PF11848 DUF3368: Domain of un 41.4 68 0.0015 21.3 4.3 34 272-305 12-45 (48)
333 PF02607 B12-binding_2: B12 bi 41.3 49 0.0011 24.4 4.1 42 236-277 10-51 (79)
334 COG4649 Uncharacterized protei 41.1 2.5E+02 0.0055 24.8 13.2 134 132-295 61-200 (221)
335 PF02847 MA3: MA3 domain; Int 40.7 1.2E+02 0.0027 24.0 6.8 58 236-295 11-70 (113)
336 PRK10564 maltose regulon perip 40.4 42 0.00092 32.1 4.3 45 213-269 254-299 (303)
337 KOG0403 Neoplastic transformat 40.3 4.3E+02 0.0092 27.1 13.6 26 353-378 511-536 (645)
338 PF13181 TPR_8: Tetratricopept 38.6 72 0.0016 18.6 3.9 24 353-376 3-26 (34)
339 PRK00971 glutaminase; Provisio 37.8 3.9E+02 0.0084 25.9 12.5 34 346-379 215-255 (307)
340 PF14689 SPOB_a: Sensor_kinase 37.4 37 0.00081 23.9 2.7 30 69-98 22-51 (62)
341 PRK10564 maltose regulon perip 37.2 61 0.0013 31.1 4.8 45 68-122 254-299 (303)
342 PF07719 TPR_2: Tetratricopept 36.8 63 0.0014 18.7 3.4 27 72-98 3-29 (34)
343 TIGR03504 FimV_Cterm FimV C-te 36.5 53 0.0011 21.4 3.1 20 78-97 7-26 (44)
344 KOG1258 mRNA processing protei 36.3 5.5E+02 0.012 27.2 15.9 179 68-276 295-489 (577)
345 COG4455 ImpE Protein of avirul 36.0 1.3E+02 0.0029 27.5 6.4 83 315-402 3-91 (273)
346 KOG2396 HAT (Half-A-TPR) repea 36.0 2.1E+02 0.0046 29.6 8.5 86 296-384 83-174 (568)
347 KOG2582 COP9 signalosome, subu 35.8 4.5E+02 0.0098 26.1 12.9 212 67-292 72-346 (422)
348 KOG1586 Protein required for f 35.8 2.4E+02 0.0052 26.2 8.0 29 238-266 165-193 (288)
349 PF11846 DUF3366: Domain of un 35.3 1.5E+02 0.0032 26.3 7.0 52 239-290 120-172 (193)
350 KOG4648 Uncharacterized conser 35.0 81 0.0018 30.8 5.2 109 236-375 106-219 (536)
351 TIGR01503 MthylAspMut_E methyl 35.0 1.1E+02 0.0024 31.2 6.4 46 107-155 66-111 (480)
352 KOG1586 Protein required for f 34.6 3.8E+02 0.0083 24.9 11.3 89 196-289 26-120 (288)
353 KOG0508 Ankyrin repeat protein 34.1 3.2E+02 0.0068 28.1 9.2 246 7-270 97-384 (615)
354 KOG2066 Vacuolar assembly/sort 34.1 5E+02 0.011 28.6 11.2 81 137-238 363-446 (846)
355 PF12796 Ank_2: Ankyrin repeat 33.9 1.4E+02 0.0029 22.2 5.7 76 105-209 4-81 (89)
356 PF14669 Asp_Glu_race_2: Putat 33.7 3.5E+02 0.0077 24.3 12.2 127 27-155 56-206 (233)
357 KOG4077 Cytochrome c oxidase, 33.2 2.3E+02 0.005 23.5 6.7 46 245-290 67-112 (149)
358 PF14044 NETI: NETI protein 32.8 32 0.0007 23.6 1.6 17 430-446 10-26 (57)
359 PHA02878 ankyrin repeat protei 32.1 5.9E+02 0.013 26.3 19.2 134 117-296 149-294 (477)
360 PF10366 Vps39_1: Vacuolar sor 29.9 1.6E+02 0.0035 23.5 5.6 28 71-98 40-67 (108)
361 COG4105 ComL DNA uptake lipopr 29.9 4.7E+02 0.01 24.5 17.5 177 141-377 45-230 (254)
362 PF11525 CopK: Copper resistan 29.4 19 0.00042 25.7 0.2 21 499-519 8-28 (73)
363 PF13174 TPR_6: Tetratricopept 28.2 54 0.0012 18.8 2.0 24 319-344 6-29 (33)
364 KOG4334 Uncharacterized conser 28.1 1.1E+02 0.0023 31.3 5.0 33 199-231 462-506 (650)
365 KOG2066 Vacuolar assembly/sort 28.1 8.5E+02 0.019 26.9 20.7 136 70-216 392-537 (846)
366 PRK11906 transcriptional regul 26.7 7.2E+02 0.016 25.6 12.6 120 242-383 273-405 (458)
367 COG0457 NrfG FOG: TPR repeat [ 26.7 4.1E+02 0.0088 22.7 18.8 208 3-255 39-264 (291)
368 PF11838 ERAP1_C: ERAP1-like C 26.3 5.9E+02 0.013 24.4 13.0 110 243-376 146-262 (324)
369 smart00544 MA3 Domain in DAP-5 26.1 3.3E+02 0.0072 21.5 9.2 56 236-293 11-68 (113)
370 PF12796 Ank_2: Ankyrin repeat 26.1 2.5E+02 0.0054 20.7 6.0 65 179-262 20-87 (89)
371 smart00028 TPR Tetratricopepti 25.9 89 0.0019 16.7 2.8 26 72-97 3-28 (34)
372 PF07163 Pex26: Pex26 protein; 25.9 3.5E+02 0.0077 25.8 7.6 81 75-155 88-183 (309)
373 PF10579 Rapsyn_N: Rapsyn N-te 25.6 1.3E+02 0.0029 22.5 3.9 46 239-284 18-65 (80)
374 KOG4334 Uncharacterized conser 25.5 33 0.00072 34.7 1.1 126 17-143 410-573 (650)
375 KOG4648 Uncharacterized conser 25.3 80 0.0017 30.8 3.5 31 299-329 112-147 (536)
376 PRK06645 DNA polymerase III su 24.9 8.2E+02 0.018 25.8 11.1 196 11-260 88-290 (507)
377 COG2987 HutU Urocanate hydrata 24.8 7.7E+02 0.017 25.3 10.2 164 239-441 215-432 (561)
378 PRK11639 zinc uptake transcrip 24.0 2.7E+02 0.006 24.2 6.5 43 236-278 34-76 (169)
379 cd00280 TRFH Telomeric Repeat 24.0 2.5E+02 0.0054 25.0 5.9 20 136-155 117-136 (200)
380 PRK11619 lytic murein transgly 23.8 9.7E+02 0.021 26.1 25.5 59 315-377 314-372 (644)
381 PRK14956 DNA polymerase III su 23.8 8.5E+02 0.018 25.4 11.0 100 245-352 184-284 (484)
382 COG5108 RPO41 Mitochondrial DN 23.6 3.3E+02 0.0072 29.3 7.7 76 267-360 33-112 (1117)
383 PRK13342 recombination factor 23.5 7.8E+02 0.017 25.0 13.0 117 244-365 154-279 (413)
384 KOG2911 Uncharacterized conser 23.5 4.9E+02 0.011 26.4 8.5 34 2-35 146-183 (439)
385 COG5108 RPO41 Mitochondrial DN 23.4 9E+02 0.019 26.3 10.6 90 189-290 33-131 (1117)
386 PF11838 ERAP1_C: ERAP1-like C 22.9 6.8E+02 0.015 24.0 15.6 70 181-262 166-237 (324)
387 COG5210 GTPase-activating prot 22.7 8.3E+02 0.018 25.6 10.9 61 247-307 362-422 (496)
388 COG5159 RPN6 26S proteasome re 22.7 5.7E+02 0.012 24.6 8.3 119 77-209 10-150 (421)
389 PF00356 LacI: Bacterial regul 22.7 91 0.002 20.5 2.4 15 431-445 32-46 (46)
390 KOG3507 DNA-directed RNA polym 21.7 32 0.00068 23.7 0.1 15 476-490 20-34 (62)
391 COG2812 DnaX DNA polymerase II 21.6 7.7E+02 0.017 26.0 10.0 100 244-352 181-281 (515)
392 PRK14958 DNA polymerase III su 21.6 8.9E+02 0.019 25.5 10.7 105 244-357 182-286 (509)
393 cd07153 Fur_like Ferric uptake 21.5 1.9E+02 0.0041 23.0 4.7 44 236-279 9-52 (116)
394 KOG1941 Acetylcholine receptor 21.2 6E+02 0.013 25.4 8.4 55 101-155 128-187 (518)
395 PF09999 DUF2240: Uncharacteri 20.7 1.8E+02 0.0038 24.7 4.3 39 313-351 84-124 (144)
396 TIGR03581 EF_0839 conserved hy 20.6 2E+02 0.0044 26.1 4.8 70 86-155 137-233 (236)
397 COG2909 MalT ATP-dependent tra 20.6 1.2E+03 0.027 26.2 18.5 156 197-377 471-644 (894)
398 COG1466 HolA DNA polymerase II 20.4 4.1E+02 0.0088 26.1 7.6 84 176-261 154-242 (334)
399 COG2178 Predicted RNA-binding 20.3 6.1E+02 0.013 22.8 7.6 17 196-212 133-149 (204)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-97 Score=821.80 Aligned_cols=500 Identities=35% Similarity=0.638 Sum_probs=475.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
++++|+++|++|+..|+.||.+||+++|++|++.+++..+.++|..|.+.|+.++..+. +|+
T Consensus 167 ~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~ 246 (857)
T PLN03077 167 YFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD 246 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999999999987766 999
Q ss_pred CCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH
Q 035847 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK 133 (523)
Q Consensus 64 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 133 (523)
.|+.||+++||+||.+|+++|++++|+++|.+|.+.| ++.+|++.|+++.|.++|..|.+.|+.||..+|
T Consensus 247 ~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~ 326 (857)
T PLN03077 247 RMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326 (857)
T ss_pred cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHH
Confidence 9999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhc------------------------------------------------cccccCchh
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEK------------------------------------------------DFSNLSLLK 165 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~------------------------------------------------~~~~~~~~~ 165 (523)
|+||++|+++|++++|.++|+++ +|+..+.++
T Consensus 327 n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 327 NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 99999999999999999999883 888899999
Q ss_pred hHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 166 ~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.|.++|..+.+. |+.|+..+||+||++|+|+|++++|.++|++|.++|+++||+||. +|+++|+.++
T Consensus 407 ~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~------------~~~~~g~~~e 473 (857)
T PLN03077 407 VGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA------------GLRLNNRCFE 473 (857)
T ss_pred HHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH------------HHHHCCCHHH
Confidence 999999998888 999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh------------------
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------------------ 307 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------------------ 307 (523)
|+++|++|.. +++||..||+++|.+|++.|.++.+.++|..+.+.|+.+|..++|+||++|
T Consensus 474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~ 552 (857)
T PLN03077 474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552 (857)
T ss_pred HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCC
Confidence 9999999986 699999999999999999999999999999999999988777777776666
Q ss_pred -------------------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHH
Q 035847 308 -------------------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCC 356 (523)
Q Consensus 308 -------------------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~ 356 (523)
|+.||.+||+++|.+|++.|++ ++|.++|++|.+.+|+.|+..||++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v--~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV--TQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH--HHHHHHHHHHHHHhCCCCchHHHHH
Confidence 5678888888888888888888 9999999999977799999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHHHHHHHhhCCCCCc------------------
Q 035847 357 MVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG------------------ 408 (523)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~~~~l~~~~~~~~~------------------ 408 (523)
|+++|+|.|++++|.+++++|+++||.. .|+|.+.|+.+++++++++|.+++
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 9999999999999999999999999987 799999999999999999999876
Q ss_pred -------------------------ceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc-------------hhhh
Q 035847 409 -------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI-------------PACG 450 (523)
Q Consensus 409 -------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~-------------~~~~ 450 (523)
.+|.|++|+.+||+.++|+..|++|..+|++.||+||+ .+++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~ 790 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCG 790 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHh
Confidence 78999999999999999999999999999999999996 5799
Q ss_pred hhHHHHHHHccccCCCCCcEEEEecccccCCCchhhHhHhhhccccCCceEEEeeCCcccccccccccCCC
Q 035847 451 HSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGD 521 (523)
Q Consensus 451 ~~~~la~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~~g~csc~~ 521 (523)
||||||+||||+++|++.||||+||||+|+|||+++|+||+++ +|+|||||.+|||||+||+|||+|
T Consensus 791 hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~----~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 791 HSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIV----RREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred ccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHh----CeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.5e-94 Score=777.08 Aligned_cols=477 Identities=27% Similarity=0.496 Sum_probs=379.6
Q ss_pred chhHHHHHHHHhhhCC-CCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hh
Q 035847 2 VIKNVTLLLQSMDLTN-PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MF 62 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f 62 (523)
.+++|+++|++|...+ +.||..||++++.+|++.++++.|.++|..|.+.|+.||..++ +|
T Consensus 102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 181 (697)
T PLN03081 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181 (697)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4689999999999864 7899999999999999999999999999999999996665544 66
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCcee
Q 035847 63 EKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACV 132 (523)
Q Consensus 63 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 132 (523)
+.|++||+++||+||.+|++.|++++|+++|++|.+.| ++.+|++.|+.+.++++|..+.+.|+.||..+
T Consensus 182 ~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred hcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 66666666666666666666666666666666666555 56666666666666666666666666666666
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK- 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~- 211 (523)
||+||++|+++|++++|.++|++ |. .+|+++||+||.+|++.|+.++|.++|++|.
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~-------------------m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDG-------------------MP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-------------------CC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666 32 3466666666666666666666666666663
Q ss_pred ---CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 212 ---QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 212 ---~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.||.+||+++|. +|++.|++++|.+++.+|.+.|+.||..+|++||++|++.|++++|.++|+.|
T Consensus 319 ~g~~pd~~t~~~ll~------------a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 319 SGVSIDQFTFSIMIR------------IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred cCCCCCHHHHHHHHH------------HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356666666666 66666666666666666666666666666666666666666666666666665
Q ss_pred HHhcCCchHHHHhHHHhhh-------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 289 LRHHIQLSTGVGIALISIQ-------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y-------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
.+ +|..+||+||..| |+.||.+||+++|++|++.|++ ++|.++|+.|.+.+|+.|
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~--~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS--EQGWEIFQSMSENHRIKP 460 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhcCCCC
Confidence 42 5566666666666 5677777777777777777777 888888888877778999
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHHHHHHHhhCCCCCc-----------
Q 035847 350 AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHAARHLFELEPLSSG----------- 408 (523)
Q Consensus 350 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~~~~l~~~~~~~~~----------- 408 (523)
+..||++||++|++.|++++|.+++++|++.|+.. .+|+++.|+.++++++++.|.+..
T Consensus 461 ~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred CccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 99999999999999999999999999999999886 799999999999999999998654
Q ss_pred --------------------------------ceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc----------
Q 035847 409 --------------------------------KVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI---------- 446 (523)
Q Consensus 409 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~---------- 446 (523)
.+|.|++|+..||+.+++++.+++|..+|++.||.||+
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~ 620 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED 620 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH
Confidence 56999999999999999999999999999999999997
Q ss_pred ----hhhhhhHHHHHHHccccCCCCCcEEEEecccccCCCchhhHhHhhhccccCCceEEEeeCCcccccccccccCCCC
Q 035847 447 ----PACGHSEKLALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFVDGACSCGDY 522 (523)
Q Consensus 447 ----~~~~~~~~la~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~~g~csc~~~ 522 (523)
.+++||||||+||||+++|++.||||+||||+|+|||+++|+||+++ +|+|||||.+|||||+||+|||+||
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~----~r~i~~rd~~rfh~f~~g~csc~d~ 696 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVT----KREIVVRDASRFHHFKLGKCSCGDY 696 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhc----ceEEEEecCCccccCCCCccccccc
Confidence 57899999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred C
Q 035847 523 W 523 (523)
Q Consensus 523 ~ 523 (523)
|
T Consensus 697 w 697 (697)
T PLN03081 697 W 697 (697)
T ss_pred C
Confidence 9
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-63 Score=552.82 Aligned_cols=489 Identities=22% Similarity=0.335 Sum_probs=442.6
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
.+++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..+. +|+
T Consensus 66 ~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~ 145 (857)
T PLN03077 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFG 145 (857)
T ss_pred CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999988776554 999
Q ss_pred CCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH
Q 035847 64 KMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK 133 (523)
Q Consensus 64 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 133 (523)
.|++||+++||+||.+|++.|++++|+++|++|...| ++++|+..++++.+.++|..|.+.|+.||..+|
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 225 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchH
Confidence 9999999999999999999999999999999999887 899999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhc------------------------------------------------cccccCchh
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEK------------------------------------------------DFSNLSLLK 165 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~------------------------------------------------~~~~~~~~~ 165 (523)
|+||++|+++|++++|.++|+++ +|+..+.++
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~ 305 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence 99999999999999999999873 788889999
Q ss_pred hHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 166 HGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 166 ~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.|+++|..+.+. |+.||..+||+||++|+++|++++|.++|++|.+||+++||+||. +|++.|++++
T Consensus 306 ~a~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~------------~~~~~g~~~~ 372 (857)
T PLN03077 306 LGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS------------GYEKNGLPDK 372 (857)
T ss_pred HHHHHHHHHHHh-CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH------------HHHhCCCHHH
Confidence 999999998888 999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh--------------CC-C
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--------------GL-G 310 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--------------~~-~ 310 (523)
|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.|+..+||+||++| .+ .
T Consensus 373 A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 452 (857)
T PLN03077 373 ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452 (857)
T ss_pred HHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 66 7
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC---CCCCCCC---
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM---PFEPSSA--- 384 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~--- 384 (523)
||+++||+||.+|++.|+. ++|..+|++|.. ++.||..||++++.+|++.|.++++.+++..| ++.|+..
T Consensus 453 ~d~vs~~~mi~~~~~~g~~--~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~n 528 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRC--FEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN 528 (857)
T ss_pred CCeeeHHHHHHHHHHCCCH--HHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceech
Confidence 9999999999999999999 999999999975 79999999999999999999999999998775 5666665
Q ss_pred -------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc-------hhhh
Q 035847 385 -------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI-------PACG 450 (523)
Q Consensus 385 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~-------~~~~ 450 (523)
++|+++.|...++.+ +.|..+|+++|.|++.+|+.+++. ++|++|++.|+.||. ..|.
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 789999887665553 678889999999999999999985 899999999999998 4578
Q ss_pred hhHHHHHHHccccCCC-CCcE--------EEEecccccCCCchhhHhHhhhccccCCce---EEEeeCCccccccccc
Q 035847 451 HSEKLALAFGLISTSP-GSPL--------RVIKNLRMCGDCHSPTKYVSKAEKRERERE---IIMIDNYRFHHFVDGA 516 (523)
Q Consensus 451 ~~~~la~a~~l~~~~~-~~~~--------~i~~nl~~~~d~h~~~~~~s~~~~~~~~r~---i~~~d~~~~h~~~~g~ 516 (523)
|+++++.|..++..+. ..++ .+++-+..+|+...|.+++.++. .+|+.. .++..++.+.+.+.|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 8999988887776654 2221 45567889999999999999997 666654 2445555555554443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-56 Score=488.16 Aligned_cols=372 Identities=15% Similarity=0.217 Sum_probs=305.7
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
||..||+.+|++|++.|+++.|.++|+.|.+.|+ .||.++||+||.+|++.|++++|.++|++|.+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl-------------~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~ 501 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL-------------KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc
Confidence 6777778888888888888888888888887777 677888888888888888888888888888876
Q ss_pred c----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 100 G----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 100 g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
| +|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++
T Consensus 502 Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~e-------------- 567 (1060)
T PLN03218 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAE-------------- 567 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH--------------
Confidence 6 7888888888888888888888888888888888888888888888888888887
Q ss_pred Hhhhhhhc--CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 170 IHPHHLKK--DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 170 ~~~~~~~~--~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
|+. .|+.||..+|++||++|+++|++++|.++|+.|.+ |+..+||++|. +|++.|++
T Consensus 568 -----M~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~------------ay~k~G~~ 630 (1060)
T PLN03218 568 -----MKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN------------SCSQKGDW 630 (1060)
T ss_pred -----HHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH------------HHHhcCCH
Confidence 643 47899999999999999999999999999999974 67799999999 99999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh----------------
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ---------------- 307 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y---------------- 307 (523)
++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+|++||++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC---CCCC
Q 035847 308 ---GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM---PFEP 381 (523)
Q Consensus 308 ---~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m---~~~p 381 (523)
++.||+++||+||.+|++.|++ ++|.++|++|.+. |+.||..||++||.+|++.|++++|.+++++| ++.|
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~--eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~p 787 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQL--PKALEVLSEMKRL-GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 5689999999999999999999 9999999999987 99999999999999999999999999999998 5778
Q ss_pred CCCCCCCHH-HHHHHHHHHHhhCCCCCcceeEEEecC--CCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 382 SSAEPCNPD-IAEHAARHLFELEPLSSGKVHSFIAGD--TSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 382 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
|...+..+- ......++..++.. ....|+ .|. ......+++ ..+|++|++.|+.||.
T Consensus 788 d~~tynsLIglc~~~y~ka~~l~~-~v~~f~---~g~~~~~n~w~~~A----l~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 788 NLVMCRCITGLCLRRFEKACALGE-PVVSFD---SGRPQIENKWTSWA----LMVYRETISAGTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhh-hhhhhh---ccccccccchHHHH----HHHHHHHHHCCCCCCH
Confidence 776222221 11111111111100 000111 111 111233444 4899999999999997
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.4e-55 Score=478.66 Aligned_cols=392 Identities=15% Similarity=0.224 Sum_probs=352.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+++|++|.+.|+.||..+|++||.+|++.|+++.|.+++++|.+.|+ .||+++||+||.+|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------EANVHTFGALIDGCA 518 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred hcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHH--hcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMIS--IKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+.|++++|+++|++|...| +|.+|++.|++++|.++|++|.+ .|+.||..+|++||++|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999887 99999999999999999999986 67999999999999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGY 225 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~ 225 (523)
.++|++ |...|+.|+..+||++|.+|++.|++++|.++|++|. .||.++|++||.
T Consensus 599 ~elf~~-------------------M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~-- 657 (1060)
T PLN03218 599 KEVYQM-------------------IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD-- 657 (1060)
T ss_pred HHHHHH-------------------HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Confidence 999999 7777999999999999999999999999999999997 489999999999
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
+|++.|++++|.++|++|.+.|++||..||++||.+|++.|++++|.++|+.|.+.|+.||..+||+||+
T Consensus 658 ----------a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~ 727 (1060)
T PLN03218 658 ----------VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727 (1060)
T ss_pred ----------HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh-------------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh---
Q 035847 306 IQ-------------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR--- 363 (523)
Q Consensus 306 ~y-------------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~--- 363 (523)
.| |+.||..||+++|.+|++.|++ ++|.++|+.|.+. |+.||..+|++|+..|.+
T Consensus 728 gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l--e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA--DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 99 6789999999999999999999 9999999999988 999999999999976542
Q ss_pred -h-------------------CCHHHHHHHHHhC---CCCCCCC----------CCCCHHHHHHHHHHHH-hhCCCCCcc
Q 035847 364 -A-------------------GQFDDTLNFMKKM---PFEPSSA----------EPCNPDIAEHAARHLF-ELEPLSSGK 409 (523)
Q Consensus 364 -~-------------------g~~~~A~~~~~~m---~~~p~~~----------~~~~~~~~~~~~~~l~-~~~~~~~~~ 409 (523)
+ +..++|..+|++| ++.||.. +.+..+.+....+.+. .-.+.+..+
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~ 884 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSN 884 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhh
Confidence 2 2346799999998 5888876 3444444443333221 112345568
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
++++|.|+... .++|+ .++++|...|+.|+.
T Consensus 885 y~~Li~g~~~~--~~~A~----~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 885 LSTLVDGFGEY--DPRAF----SLLEEAASLGVVPSV 915 (1060)
T ss_pred hHHHHHhhccC--hHHHH----HHHHHHHHcCCCCCc
Confidence 88889887544 24554 789999999999997
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-52 Score=451.81 Aligned_cols=354 Identities=21% Similarity=0.320 Sum_probs=315.7
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCc-chHH-------------HHhcCC---
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-CAFL-------------GMFEKM--- 65 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~-------------~~f~~~--- 65 (523)
++.|..++..|.+.|+.||..+|+.|++.|++.|+++.|.++|++|.+..... +..+ .+|++|
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34566777777777777777777777777777777777777777665422110 0000 045544
Q ss_pred -CCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHh
Q 035847 66 -PERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134 (523)
Q Consensus 66 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 134 (523)
..||..+|+.+|.+|++.|..+.+.+++..|.+.| ++.+|++.|++++|.++|+.|. .+|+.+||
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n 294 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWN 294 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHH
Confidence 37999999999999999999999999999999887 9999999999999999999995 67999999
Q ss_pred HHHHHHHhcCCHHHHHHHhhhc-----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc
Q 035847 135 PVLDMFIKCGRMEMASGEFEEK-----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~-----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~ 197 (523)
+||.+|++.|++++|.++|++| +|+..+.++.|+++|..+.+. |+.||..+||+||++|+|+
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHC
Confidence 9999999999999999999985 899999999999999999988 9999999999999999999
Q ss_pred CChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 035847 198 RYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277 (523)
Q Consensus 198 g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~ 277 (523)
|++++|.++|++|.+||++|||+||. +|+++|+.++|+++|++|.+.|+.||..||+++|.+|++.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~------------~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIA------------GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHH------------HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-hcCCchHHHHhHHHhhh----------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 278 FKLGKEIHGYVLR-HHIQLSTGVGIALISIQ----------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 278 ~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y----------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+++|.++|+.|.+ .|+.|+..+|+++|+.| ++.||..+|++||.+|+.+|+. +.|..+++.
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~--~~a~~~~~~ 519 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL--ELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCc--HHHHHHHHH
Confidence 9999999999986 69999999999999999 4489999999999999999999 999999998
Q ss_pred hHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 341 MKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 341 m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
+. ++.|+ ..+|+.|+++|++.|++++|.+++++|.
T Consensus 520 l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 520 LY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred Hh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 85 56776 6899999999999999999999999984
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.92 E-value=3.2e-25 Score=179.92 Aligned_cols=86 Identities=58% Similarity=0.980 Sum_probs=75.8
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc----------------------hhhhhhHHHHHHHccccCCCC
Q 035847 410 VHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI----------------------PACGHSEKLALAFGLISTSPG 467 (523)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~----------------------~~~~~~~~la~a~~l~~~~~~ 467 (523)
.|.|++|+.+||+.. +..+|...||.|+. .++.||||||+||||+++
T Consensus 8 ~h~F~sgd~shp~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~--- 76 (116)
T PF14432_consen 8 VHSFVSGDRSHPQSE--------LINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT--- 76 (116)
T ss_pred eEEEEeCCCcCccHH--------HHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce---
Confidence 489999999999983 34555666666655 347899999999999998
Q ss_pred CcEEEEecc-cccCCCchhhHhHhhhccccCCceEEEeeCCcccccc
Q 035847 468 SPLRVIKNL-RMCGDCHSPTKYVSKAEKREREREIIMIDNYRFHHFV 513 (523)
Q Consensus 468 ~~~~i~~nl-~~~~d~h~~~~~~s~~~~~~~~r~i~~~d~~~~h~~~ 513 (523)
+|+||+ |||+|||+++|+||+++ +|+|||||++|||||+
T Consensus 77 ---~vvkn~~RvC~DCH~~~K~iS~~~----~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 ---RVVKNLKRVCGDCHSFIKFISKIT----GREIIVRDSNRFHHFK 116 (116)
T ss_pred ---eEEecCCccchHHHHHHHHHHHHH----CeEEEEeCCCeeeeCC
Confidence 899999 99999999999999999 9999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=2.2e-18 Score=193.29 Aligned_cols=419 Identities=12% Similarity=0.038 Sum_probs=268.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|......... +......++..+.+.|+++.|..+++.+.... .++..+|+.+...|.+
T Consensus 413 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~ 477 (899)
T TIGR02917 413 PSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--------------PDNASLHNLLGAIYLG 477 (899)
T ss_pred hHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------CCCcHHHHHHHHHHHh
Confidence 45677777766654322 22334445566667777777777777666542 2345566666666666
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 153 (523)
.|++++|...|+++.+.. +...+...|++++|.+.++.+.+.. +.+..++..+...|.+.|+.++|..+|
T Consensus 478 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 478 KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655432 4445555666666666666666543 334556666666666666666666666
Q ss_pred hhc----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 154 EEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 154 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
+++ .+...+..+.+..++..+.+. ...+..+|..+...|.+.|++++|...|+.+.+ .+
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 634 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 653 222345555555555554433 344566778888888888888888888877643 24
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
...|..+.. .|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|.++++.+.+...
T Consensus 635 ~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 700 (899)
T TIGR02917 635 ALALLLLAD------------AYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP- 700 (899)
T ss_pred hHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 456777777 6777777777777777776532 22456677777777777777777777777766542
Q ss_pred chHHHHhHHHhhh-----------------CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 295 LSTGVGIALISIQ-----------------GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 295 ~~~~~~~~li~~y-----------------~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
.+...+..+...| ...|+..++..+...|.+.|+. ++|.+.++.+.+. ...+...+..+
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~--~~~~~~~~~~l 776 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT--AEAVKTLEAWLKT--HPNDAVLRTAL 776 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH--HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 2333344333333 3356667788888888899998 8899888888764 34557788888
Q ss_pred HHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHH
Q 035847 358 VDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHK 425 (523)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (523)
...|.+.|++++|.+.++++ ...|+.. ..++ ..|...+++.++..|.++..+..+...+...|+.++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 88888899999999888885 3445544 4555 568888888888888887766666555667788888
Q ss_pred HHHHHHHHHHHHHHcCCc-CCc-----hhhhhhHHHHHHHccc
Q 035847 426 ISEKLMRLYSEIKKIGYM-KRI-----PACGHSEKLALAFGLI 462 (523)
Q Consensus 426 ~~~~l~~l~~~m~~~g~~-pd~-----~~~~~~~~la~a~~l~ 462 (523)
+. +.++++.+.+-. |+. ......|+...|..++
T Consensus 856 A~----~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 856 AL----PLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HH----HHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 455566554432 222 2234455555554443
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=9.3e-18 Score=188.24 Aligned_cols=448 Identities=12% Similarity=0.043 Sum_probs=342.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|..+|+++.+.. +.+...+..+...+...|+++.|...+..+.+... .+...+..++..|.
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------~~~~~~~~l~~~~~ 442 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP--------------ELGRADLLLILSYL 442 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--------------cchhhHHHHHHHHH
Confidence 4678999999987653 22455677777888899999999999999887542 23456777889999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+.|++++|+++++.+.... +...+...|+.+.|.+.+..+.+.. +.+...+..+...+.+.|++++|...
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987653 6777888999999999999998764 34566788899999999999999999
Q ss_pred hhhc----------------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---C
Q 035847 153 FEEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---K 213 (523)
Q Consensus 153 f~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~ 213 (523)
|+++ .....+..+.+...+..+.+. ...+...+..+...|.+.|+.++|..+++.+.+ .
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 9884 233456778888888887665 234567888899999999999999999998863 4
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|..+.. .|.+.|++++|...|+.+.+.. +.+...+..+..++.+.|+.++|..++..+.+..
T Consensus 600 ~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 600 SPEAWLMLGR------------AQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred CHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 6678999999 8899999999999999998753 2356778888899999999999999999988753
Q ss_pred CchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHH
Q 035847 294 QLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYC 355 (523)
Q Consensus 294 ~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~ 355 (523)
+.+...+..+...+ .. .++...|..+...|...|+. ++|...|+.+... .|+..++.
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~~~~---~~~~~~~~ 740 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY--PAAIQAYRKALKR---APSSQNAI 740 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH--HHHHHHHHHHHhh---CCCchHHH
Confidence 33455666666555 22 45667888899999999999 9999999999865 57778888
Q ss_pred HHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchH
Q 035847 356 CMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLV 423 (523)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 423 (523)
.+..++.+.|++++|.+.++++ ...|+.. ..|+.+.|....+++++..|+++..++.+...+...+.
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-
Confidence 8999999999999999998885 3455554 58999999999999999999988777766666666666
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCc--------hhhhhhHHHHHHHccc----cCCCCCcE---EEEecccccCCCchhhHh
Q 035847 424 HKISEKLMRLYSEIKKIGYMKRI--------PACGHSEKLALAFGLI----STSPGSPL---RVIKNLRMCGDCHSPTKY 488 (523)
Q Consensus 424 ~~~~~~l~~l~~~m~~~g~~pd~--------~~~~~~~~la~a~~l~----~~~~~~~~---~i~~nl~~~~d~h~~~~~ 488 (523)
.++...+++.+. ..|+. .+..+.++.+.|...+ ...|..+. .+..-+...|+-..|+++
T Consensus 820 ~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 820 PRALEYAEKALK------LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHHHh------hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 666544444333 23544 2344455555555444 22222221 112234455888888888
Q ss_pred Hhhhc
Q 035847 489 VSKAE 493 (523)
Q Consensus 489 ~s~~~ 493 (523)
+.++.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 88775
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=2.3e-16 Score=160.12 Aligned_cols=277 Identities=11% Similarity=0.073 Sum_probs=218.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------- 100 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------- 100 (523)
+...|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|+.+++.+...+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 346788999999999988764 2356788899999999999999999998887643
Q ss_pred --HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 --VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 --ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
+...+...|+++.|..+|..+.+.. .++..+++.++..|.+.|++++|...|++ +...
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------------------~~~~ 170 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER-------------------LEKL 170 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH-------------------HHHh
Confidence 4666778889999999998888652 45677889999999999999999999988 3331
Q ss_pred CCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 179 DLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 179 g~~~d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
+..++ ...+..+...+.+.|+.++|...|+++.+ | +..++..+.. .|.+.|++++|.++|+
T Consensus 171 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~ 238 (389)
T PRK11788 171 GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGD------------LALAQGDYAAAIEALE 238 (389)
T ss_pred cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHH------------HHHHCCCHHHHHHHHH
Confidence 22221 22456677788899999999999988753 3 3456777777 8889999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
++...+..+...+++.+..++...|+.++|.+.++.+.+. .|+...++.+...+.+.|+.
T Consensus 239 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~------------------~p~~~~~~~la~~~~~~g~~-- 298 (389)
T PRK11788 239 RVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE------------------YPGADLLLALAQLLEEQEGP-- 298 (389)
T ss_pred HHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCchHHHHHHHHHHHhCCH--
Confidence 9987543333467888889999999999999998888764 34555668888999999999
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh---hCCHHHHHHHHHhC
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR---AGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~~~~~m 377 (523)
++|..+|+.+.+. .|+..++..++..+.. .|+.+++..++++|
T Consensus 299 ~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 299 EAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999999988754 6898899988887765 55888999888887
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=162.55 Aligned_cols=285 Identities=14% Similarity=0.129 Sum_probs=232.2
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|+..|.++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ..+...|..+...|.
T Consensus 50 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------~~~~~~~~~La~~~~ 118 (389)
T PRK11788 50 QPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR----------EQRLLALQELGQDYL 118 (389)
T ss_pred ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH----------HHHHHHHHHHHHHHH
Confidence 3678999999999863 22445788888999999999999999999887532100 012357899999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc----eeHhHHHHHHHhcCCHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA----CVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 148 (523)
+.|++++|+.+|+++.+.. +...+...|++++|.+.+..+.+.+-.++. ..+..+...+.+.|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 9999999999999998643 778889999999999999999887533221 245667788899999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--hhhHHHHHHh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH--LVSWNAMLAG 224 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~--~~t~~~li~~ 224 (523)
|...|++ ... ....+...+..+...|.+.|+.++|.++|+++.+ |+ ..+++.+..
T Consensus 199 A~~~~~~-------------------al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~- 257 (389)
T PRK11788 199 ARALLKK-------------------ALA-ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME- 257 (389)
T ss_pred HHHHHHH-------------------HHh-HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH-
Confidence 9999999 333 1223466788899999999999999999999874 44 346888889
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.+.|++++|...|+++.+. .|+...+..+...+.+.|+.++|..+++.+.+.
T Consensus 258 -----------~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------------- 311 (389)
T PRK11788 258 -----------CYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR------------- 311 (389)
T ss_pred -----------HHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------
Confidence 899999999999999999885 577777788999999999999999999988774
Q ss_pred hhhCCCCCcchHHHHHHHHHh---cCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGR---CGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~---~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
.|+..+++.++..+.. .|+. +++..+|+.|.++ ++.|+..
T Consensus 312 -----~P~~~~~~~l~~~~~~~~~~g~~--~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 312 -----HPSLRGFHRLLDYHLAEAEEGRA--KESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred -----CcCHHHHHHHHHHhhhccCCccc--hhHHHHHHHHHHH-HHhCCCC
Confidence 4677888988888775 5688 9999999999987 8888876
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.1e-12 Score=124.46 Aligned_cols=355 Identities=14% Similarity=0.143 Sum_probs=230.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhcc--CCCChHHH-HHHHHHHHHhCCCcc-------hHHHHhcCCCCCCcch
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCP--KLNNLELG-IQVHAHLIVCGVELC-------AFLGMFEKMPERNVFS 72 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~-------~~~~~f~~~~~~~~~~ 72 (523)
++++.-+|+.|+..|+..+...--.|++.-+ .+.+..-+ ++-|-.|.+.|-.+. ..-.+|+..| ++-.|
T Consensus 131 vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT~et 209 (625)
T KOG4422|consen 131 VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KTDET 209 (625)
T ss_pred cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CCchh
Confidence 4677888999999888777766555555433 23332222 234445555443221 1111666665 46689
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
|.+||.|+|+-...+.|.+++++-.... ...+......+..++.+..+|+...+.||..|+|++++..++.|++
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F 289 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKF 289 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcch
Confidence 9999999999999999999998876543 3333333344455599999999999999999999999999999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHH-HHHHHhcCC--------C---C-
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKV-AHCKFSKIK--------Q---K- 213 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~-A~~vf~~m~--------~---~- 213 (523)
+.|.+.+-+ +... ||.-|++|...+|..+|.-+++.++..+ |..+..++. + |
T Consensus 290 ~~ar~aalq--------------il~E-mKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 290 EDARKAALQ--------------ILGE-MKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHH--------------HHHH-HHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 988776655 3444 5656999999999999999998888644 333333322 1 1
Q ss_pred ChhhHHHHHH---------------hhhhcCCccc---------------cchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 214 HLVSWNAMLA---------------GYALGGFREE---------------ITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 214 ~~~t~~~li~---------------~~~~~g~~~~---------------i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
|..-+-+-+. ++.+.|.-.. ....|+....+.-+..|+.|.-+-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 1111111111 1222222211 346667777888888999998888889999
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-CC--CCCcchHHHHHHHHHhcC-CCchHHHHHHHH
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-GL--GTGSFVWNSLIDMYGRCG-AIQKNEGWRYFE 339 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-~~--~p~~~~~n~li~~~~~~g-~~~~~~a~~~~~ 339 (523)
+...++.|..-.+.++...+++..++..|........--++..+ +. .|+...-..+=..+++.- ++ .+....--.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~-~e~~e~~~~ 513 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI-KEAYESQPI 513 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH-HHHHHhhHH
Confidence 99999999999999999999999999988665554444333333 22 344332222222222221 11 012222234
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+|++. .......++..-.+.|.|+.++|.+++.-.
T Consensus 514 R~r~~---~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 514 RQRAQ---DWPATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred HHHhc---cCChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 45543 344456677777788888888888886654
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.54 E-value=3.6e-11 Score=129.13 Aligned_cols=328 Identities=10% Similarity=-0.047 Sum_probs=218.5
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+.+++........+.. .+..+..++...|+++.|...++.+.... ..+...|..+-..+.+
T Consensus 58 ~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--------------P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 58 TDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN--------------VCQPEDVLLVASVLLK 122 (656)
T ss_pred cchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC--------------CCChHHHHHHHHHHHH
Confidence 45666666666655333322 23333344445777777777777777653 1245567777777777
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF 153 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f 153 (523)
.|++++|+..|++..... +...+...|+.++|...+..+....- .+...+..+ ..+.+.|++++|..++
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 777888877777776532 55566777777777777776655431 122223222 3466777777777777
Q ss_pred hhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCC
Q 035847 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGF 230 (523)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~ 230 (523)
+. +......++...+..+...+.+.|+.++|...|+...+ | +...++.+-.
T Consensus 201 ~~-------------------~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~------- 254 (656)
T PRK15174 201 RA-------------------LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL------- 254 (656)
T ss_pred HH-------------------HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-------
Confidence 76 32212223344555566788888999999988887653 3 4456777777
Q ss_pred ccccchhhccCCchH----HHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 231 REEITGFTQYGDGET----ALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 231 ~~~i~~~~~~g~~~~----A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.|.+.|++++ |+..|++..+. .| +...+..+...+...|+.++|...++...+.. |
T Consensus 255 -----~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P---------- 315 (656)
T PRK15174 255 -----AYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--P---------- 315 (656)
T ss_pred -----HHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C----------
Confidence 7778888875 78888888764 45 45677788888888999999999988887642 2
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhH-HHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
.+...+..+...|.+.|+. ++|...|+.+... .|+... +..+..++...|+.++|...+++. ...|+.
T Consensus 316 -----~~~~a~~~La~~l~~~G~~--~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 316 -----DLPYVRAMYARALRQVGQY--TAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred -----CCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 1334667788899999999 9999999988764 566433 344566788999999999999884 455655
Q ss_pred CCCCCHHHHHHHHHHHHhhC
Q 035847 384 AEPCNPDIAEHAARHLFELE 403 (523)
Q Consensus 384 ~~~~~~~~~~~~~~~l~~~~ 403 (523)
. ..+.+.+.......++..
T Consensus 386 ~-~~~~~ea~~~~~~~~~~~ 404 (656)
T PRK15174 386 L-PQSFEEGLLALDGQISAV 404 (656)
T ss_pred c-hhhHHHHHHHHHHHHHhc
Confidence 4 344555555555555544
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.52 E-value=3.4e-11 Score=129.35 Aligned_cols=315 Identities=10% Similarity=-0.007 Sum_probs=243.1
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG- 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 100 (523)
....-.++..+.+.|+++.|..++........ . +...+..+..+....|++++|+..|+++....
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-------------~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P 107 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAK-------------N-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV 107 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-------------C-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC
Confidence 34455566777788999999999888887643 2 34455566677778999999999999998764
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhh
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~ 172 (523)
+...+...|+.+.|.+.++...+.. +.+..++..+...|...|++++|...++.
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~----------------- 169 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART----------------- 169 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH-----------------
Confidence 6667788999999999999998762 33567888899999999999999999987
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 173 HHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK----HLVSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 173 ~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~----~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
+...... +...+..+ ..+.+.|++++|..+++.+.+. +...+..+.. .+.+.|++++|+.
T Consensus 170 --~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~------------~l~~~g~~~eA~~ 233 (656)
T PRK15174 170 --QAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVD------------TLCAVGKYQEAIQ 233 (656)
T ss_pred --HHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHH------------HHHHCCCHHHHHH
Confidence 4321222 22333333 3478899999999999987542 2334444556 7788999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccCChhH----HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH
Q 035847 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKL----GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324 (523)
Q Consensus 249 lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~ 324 (523)
.|++..+.. .-+...+..+-..+...|+.++ |...++...+. .| .+...+..+...+.
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P---------------~~~~a~~~lg~~l~ 295 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NS---------------DNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CC---------------CCHHHHHHHHHHHH
Confidence 999998753 2245667778888899999886 78888887763 22 24568889999999
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHH
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDI 391 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~ 391 (523)
..|+. ++|..++++..+. .|+ ...+..+..++.+.|++++|.+.++++. ..|+.. ..|+.+.
T Consensus 296 ~~g~~--~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de 370 (656)
T PRK15174 296 RTGQN--EKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE 370 (656)
T ss_pred HCCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH
Confidence 99999 9999999998864 455 4567778889999999999999998863 566653 6789999
Q ss_pred HHHHHHHHHhhCCCCC
Q 035847 392 AEHAARHLFELEPLSS 407 (523)
Q Consensus 392 ~~~~~~~l~~~~~~~~ 407 (523)
|...+++.++..|++.
T Consensus 371 A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 371 AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHhChhhc
Confidence 9999999999999865
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=6.5e-11 Score=135.62 Aligned_cols=384 Identities=10% Similarity=0.053 Sum_probs=262.3
Q ss_pred hhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH-----
Q 035847 3 IKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM----- 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l----- 76 (523)
+++|+..|++..+. .| |...+..+-.++.+.|++++|...++...+.... .++...|..+
T Consensus 285 ~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~------------~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH------------SSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ccchhHHHHHHHhhh
Confidence 57788888877764 34 5567777778888888888888888887765321 1122223322
Q ss_pred -------HHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 77 -------MGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 77 -------i~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
-..+.+.|++++|+..|++..... +-..+...|+.++|.+.|+..++.. +.+...+..+...|
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 235678899999999999887654 5667788999999999999998763 23455666677766
Q ss_pred HhcCCHHHHHHHhhhc-------------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHH
Q 035847 141 IKCGRMEMASGEFEEK-------------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFY 194 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~ 194 (523)
. .++.++|..+++.. .....+..++|.+.+...++. .| +..++..+...|
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~---~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL---DPGSVWLTYRLAQDL 505 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHH
Confidence 4 45778888777642 112356777788877777765 34 456777888889
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH--------
Q 035847 195 AKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-------- 263 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-------- 263 (523)
.+.|+.++|...|+...+ | +...+..+.. .+.+.|+.++|+..++.+......++..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al------------~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGL------------YLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH------------HHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 999999999999987642 4 3334444434 5567888899998888765433222221
Q ss_pred -HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 264 -SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 264 -t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
.+..+...+...|+.++|.++++. . +++...+..+-..|.+.|+. ++|+..|+...
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~------~---------------p~~~~~~~~La~~~~~~g~~--~~A~~~y~~al 630 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ------Q---------------PPSTRIDLTLADWAQQRGDY--AAARAAYQRVL 630 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh------C---------------CCCchHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 123345567778888888887661 1 12444566778888899999 99999998887
Q ss_pred HhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcc
Q 035847 343 KEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGK 409 (523)
Q Consensus 343 ~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~ 409 (523)
+. .|+ ...+..+...|...|++++|.+.++... ..|+.. ..|+.+.|....+++++..|+++..
T Consensus 631 ~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~ 707 (1157)
T PRK11447 631 TR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS 707 (1157)
T ss_pred Hh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc
Confidence 64 444 6788888889999999999999988753 455554 6788888888888888877665431
Q ss_pred e------eEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 410 V------HSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 410 ~------~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
. .....-+...|+.+++...++ .-|...|+.|+.
T Consensus 708 ~~~a~~~~~~a~~~~~~G~~~~A~~~y~---~Al~~~~~~~~~ 747 (1157)
T PRK11447 708 MESALVLRDAARFEAQTGQPQQALETYK---DAMVASGITPTR 747 (1157)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhhcCCCCCC
Confidence 1 111122345677777754433 334556777655
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.46 E-value=4.2e-10 Score=123.41 Aligned_cols=369 Identities=8% Similarity=-0.000 Sum_probs=261.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
.++|+.++...... -+.+...+..+..++.+.|++++|..++....+.. ..+...+..+...+.+
T Consensus 31 ~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 31 DAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--------------PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHH
Confidence 56888888887652 13344568888888889999999999999987753 2346677888889999
Q ss_pred cCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 83 LGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.|++++|+..+++..... +..++...|+.+.|...++.+.+.. +.+..++..+...+.+.|..+.|+..++
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 999999999999886644 4556678899999999999999873 3345566678888888999999998888
Q ss_pred hccc-------------------------cccCch---hhHhhHhhhhhhcCCCCCchh-HH----HHHHHHHHhcCChH
Q 035847 155 EKDF-------------------------SNLSLL---KHGKEIHPHHLKKDDLESDLL-VN----NSLMDFYAKCRYLK 201 (523)
Q Consensus 155 ~~~~-------------------------~~~~~~---~~~~~~~~~~~~~~g~~~d~~-~~----~~li~~~~k~g~~~ 201 (523)
.+.. ...+.+ +.+.+.+..+.+.....|+.. .+ ...+.++...|+.+
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 5211 000111 344445555443312233321 11 11133456779999
Q ss_pred HHHHHHhcCCCCC--hhhH--HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC---CHHHHHHHHHHhhc
Q 035847 202 VAHCKFSKIKQKH--LVSW--NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP---NTISLSGVLAACAQ 274 (523)
Q Consensus 202 ~A~~vf~~m~~~~--~~t~--~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p---~~~t~~~ll~a~~~ 274 (523)
+|...|+.+.+.+ ...+ -.+.. .|...|++++|+..|++..+..-.. .......+..++..
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~------------~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVAS------------AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHH------------HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 9999999987532 2222 11344 7788999999999999987643111 12445666668889
Q ss_pred cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH
Q 035847 275 VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 275 ~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~---~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
.|+.++|.++++.+.+.. ++....+... .-.|+. ..+..+...+...|+. ++|+.+++++... ..-+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~-P~~~~~~~~~----~~~p~~~~~~a~~~~a~~l~~~g~~--~eA~~~l~~al~~--~P~n~ 393 (765)
T PRK10049 323 SENYPGALTVTAHTINNS-PPFLRLYGSP----TSIPNDDWLQGQSLLSQVAKYSNDL--PQAEMRARELAYN--APGNQ 393 (765)
T ss_pred cccHHHHHHHHHHHhhcC-CceEeecCCC----CCCCCchHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCCH
Confidence 999999999999888642 1111000000 003342 2456677888999999 9999999999864 23346
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 352 EQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 352 ~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..+..+...+...|+.++|++.+++. ...|+.. ..++.+.|+...+.+++..|+++.
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 78888999999999999999999984 5788875 778899999999999999998874
No 17
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.3e-13 Score=94.91 Aligned_cols=50 Identities=20% Similarity=0.508 Sum_probs=48.7
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
||+++||++|. +|++.|++++|+++|++|.+.|++||..||++||++||+
T Consensus 1 P~~~~yn~li~------------~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLIS------------GYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999 999999999999999999999999999999999999986
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1e-10 Score=125.64 Aligned_cols=376 Identities=13% Similarity=0.032 Sum_probs=241.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|.+... +.|+...|..+-.++.+.|+++.|...+...++.. ..+...|..+-.+|..
T Consensus 143 ~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--------------p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 143 FNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--------------PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHH
Confidence 5678888887665 45677777777777888888888888888777643 2356677778888888
Q ss_pred cCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 83 LGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
.|++++|+.-|......+ ......+ .....+.+......+.. .++...+..+ ..|......+.+..-+++.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVER-LLKKFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHH-HHHHHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhcc
Confidence 888888887775543221 0000000 00011111111111110 1111111111 1111110000000000000
Q ss_pred -------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC
Q 035847 157 -------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH 214 (523)
Q Consensus 157 -------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~ 214 (523)
-....+.++.+.+.+...+......| +...|+.+-..|...|++++|...|+...+ |+
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 00011223333344444454422334 456788888899999999999999998753 54
Q ss_pred -hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 215 -LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 215 -~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
..+|..+.. .+...|++++|+..|++..+.. +-+..+|..+-..+...|++++|...++..++..
T Consensus 364 ~~~~~~~la~------------~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 364 VTQSYIKRAS------------MNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred cHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 447777777 8889999999999999987753 2246788888888999999999999999988742
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 372 (523)
+.+...|..+...+.+.|+. ++|...|++..+. .|+ ...|+.+-..+...|++++|.+
T Consensus 430 ----------------P~~~~~~~~la~~~~~~g~~--~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 430 ----------------PDFIFSHIQLGVTQYKEGSI--ASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred ----------------ccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 22456677888899999999 9999999998764 354 6788889999999999999999
Q ss_pred HHHh-CCCCCCCC------------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHH
Q 035847 373 FMKK-MPFEPSSA------------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMR 432 (523)
Q Consensus 373 ~~~~-m~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 432 (523)
.+++ ....|+.. ..++++.|...+++.++++|.+...+..+...+...|+.+++...+++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9988 44555421 147788888899999999888766555555555667778887654444
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.43 E-value=1.9e-10 Score=131.78 Aligned_cols=342 Identities=9% Similarity=0.011 Sum_probs=232.1
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------- 100 (523)
.+...|++++|...++...+.. ..|...+..|-..|.+.|++++|+..|++..+..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--------------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 3456788888888888877753 2367788888888999999999999998876532
Q ss_pred -H------------HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhH
Q 035847 101 -V------------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167 (523)
Q Consensus 101 -l------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 167 (523)
+ -..+.+.|++++|.+.+.++++.. +.+...+..+-..|.+.|++++|.+.|++
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~------------ 410 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQ------------ 410 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH------------
Confidence 0 123457788999999999888763 33556677788889999999999999988
Q ss_pred hhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh------------hhHHHHHHhhhhcCCccccc
Q 035847 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL------------VSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~------------~t~~~li~~~~~~g~~~~i~ 235 (523)
... .-..+...+..+...|. .++.++|...++.+..... ..+..+..
T Consensus 411 -------aL~-~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~------------ 469 (1157)
T PRK11447 411 -------ALR-MDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE------------ 469 (1157)
T ss_pred -------HHH-hCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH------------
Confidence 322 11223455666666664 4678999998887753211 12333444
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh-HHHh--------
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI-ALIS-------- 305 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~-~li~-------- 305 (523)
.+...|++++|++.|++..+. .|+ ...+..+...+.+.|+.++|...++.+.+..-......+. ++..
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 677899999999999999874 454 4566778888999999999999999988743221111221 1110
Q ss_pred ---hh-CCC-----CCcch---------HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH
Q 035847 306 ---IQ-GLG-----TGSFV---------WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367 (523)
Q Consensus 306 ---~y-~~~-----p~~~~---------~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 367 (523)
.+ .+. ++... +..+...+...|+. ++|..+++. ..++...+..+-..+.+.|++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~--~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE--AEAEALLRQ------QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH--HHHHHHHHh------CCCCchHHHHHHHHHHHcCCH
Confidence 00 111 11111 11345567778888 888887761 133455667788888889999
Q ss_pred HHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHH
Q 035847 368 DDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKL 430 (523)
Q Consensus 368 ~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (523)
++|.+.+++. ...|+.. ..|+.+.|....+.+.+..|.+......+...+...|+.+++.+.+
T Consensus 620 ~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 620 AAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998874 4567665 6788888888888888887776654333333344567777775333
No 20
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=3.6e-13 Score=92.66 Aligned_cols=50 Identities=26% Similarity=0.516 Sum_probs=48.5
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
||+++||++|++|++.|++ ++|.++|++|.+. |+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~--~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKF--EEALKLFKEMKKR-GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCH--HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999 9999999999988 999999999999999985
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.39 E-value=6e-10 Score=122.22 Aligned_cols=367 Identities=8% Similarity=-0.035 Sum_probs=237.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..-..-.+......|+.++|.+++....... ..+...+..+...+.+.|++++|+.+|++.....
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--------------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM--------------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44445556667778899999999998887522 3356679999999999999999999999976553
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
+...+...|+.++|...++..++.. +.+.. +..+-..+...|+.++|...++++
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~a--------------- 142 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQA--------------- 142 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHH---------------
Confidence 6667788999999999999998872 34555 888899999999999999999992
Q ss_pred hhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh------hhHHHHHH--------------------
Q 035847 172 PHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL------VSWNAMLA-------------------- 223 (523)
Q Consensus 172 ~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~------~t~~~li~-------------------- 223 (523)
-. ..| +...+..+..++.+.|..++|...++...+ |+. .....++.
T Consensus 143 ----l~--~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al 216 (765)
T PRK10049 143 ----LP--RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL 216 (765)
T ss_pred ----HH--hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence 22 122 233444455555555555555555554332 110 00000000
Q ss_pred ----hhhhc--CCccc-----------cchhhccCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHhhccCChhHHHHHH
Q 035847 224 ----GYALG--GFREE-----------ITGFTQYGDGETALEFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 224 ----~~~~~--g~~~~-----------i~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
.+.+. ..++. +..+...|++++|+..|+.+.+.+.. |+..- ..+..++...|++++|.+.+
T Consensus 217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l 295 (765)
T PRK10049 217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSIL 295 (765)
T ss_pred HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHH
Confidence 00000 00000 01344567777777777777766532 33211 11345677777777777777
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC----------CccC---Hh
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN----------MEPA---ME 352 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g----------~~p~---~~ 352 (523)
+.+.+.. |.. .......+..+..++...|+. ++|..+++.+..... -.|+ ..
T Consensus 296 ~~~l~~~--p~~-----------~~~~~~~~~~L~~a~~~~g~~--~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 296 TELFYHP--ETI-----------ADLSDEELADLFYSLLESENY--PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhhcC--CCC-----------CCCChHHHHHHHHHHHhcccH--HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 7766531 100 000123455667788999999 999999999986410 1123 23
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCC
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSH 420 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 420 (523)
.+..+...+...|++++|.++++++ ...|+.. ..|+.+.|+...++++++.|++..............
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 4566778889999999999999985 3556665 678999999999999999999876433333334445
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 421 SLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 421 ~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
++.+++ +.+++++.+ ..||.
T Consensus 441 ~~~~~A----~~~~~~ll~--~~Pd~ 460 (765)
T PRK10049 441 QEWRQM----DVLTDDVVA--REPQD 460 (765)
T ss_pred CCHHHH----HHHHHHHHH--hCCCC
Confidence 566665 355555554 35665
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.38 E-value=4.3e-10 Score=111.69 Aligned_cols=335 Identities=13% Similarity=0.171 Sum_probs=204.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
-..+|+.+-+.+-..|+++.|..++..+++.. ...+..|..+-.++...|+.+.|...|.+-.+.+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--------------p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK--------------PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--------------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 34577777777777888888888888777653 2356777777778888888888877777666554
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhc---------ccccc
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEK---------DFSNL 161 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~---------~~~~~ 161 (523)
+-......|++.+|..-+-+.++. .|. ..+|+.|-..+-..|+...|..-|++| ++-++
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNL 258 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINL 258 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhH
Confidence 111222345666677666666654 333 456777777777777777777777773 11122
Q ss_pred CchhhHhhHhhhhh----hcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhhhcCCccc
Q 035847 162 SLLKHGKEIHPHHL----KKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYALGGFREE 233 (523)
Q Consensus 162 ~~~~~~~~~~~~~~----~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~~~g~~~~ 233 (523)
|.+-....+++..+ +.....|+ .+++..|-..|-..|.+|-|...+++-.+ |+- ..||.|-.
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan---------- 328 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN---------- 328 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH----------
Confidence 21111111111110 00122332 33444444445555555555555554432 322 35555555
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC-
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT- 311 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p- 311 (523)
++-..|++.+|.+.|+.-..- .|+ ....+.|-..+...|.++.|..++....+ +.|
T Consensus 329 --ALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~------------------v~p~ 386 (966)
T KOG4626|consen 329 --ALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE------------------VFPE 386 (966)
T ss_pred --HHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh------------------hChh
Confidence 555555555555555554432 232 23344455555555555555555554443 222
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA----- 384 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~----- 384 (523)
=...+|.|-..|-+.|++ ++|...+++.. .|.|+ ...|+.|-..|-..|+++.|.+.+.+ +.+.|...
T Consensus 387 ~aaa~nNLa~i~kqqgnl--~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNL--DDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhhhhhHHHHHHhcccH--HHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 234678888888899999 88988888776 57888 57888888888889999998888776 34555443
Q ss_pred ------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 ------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
-.||+..|....+..+++.|+-+.
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 567888888888899999888665
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.36 E-value=2.5e-10 Score=113.31 Aligned_cols=320 Identities=14% Similarity=0.181 Sum_probs=252.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHH-H
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL-D 138 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~ 138 (523)
-..+|..+-+.+-..|++.+|+.+|+.|.+.. +-.++...|+.+.|.+.|...++. .|+.+...+-+ .
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 46789999999999999999999999998775 666777889999999999988875 57666544444 3
Q ss_pred HHHhcCCHHHHHHHhhhc----------------cccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChH
Q 035847 139 MFIKCGRMEMASGEFEEK----------------DFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLK 201 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~----------------~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~ 201 (523)
..-..|++++|...+.+| .+...|+.-.|.+-+...++. .|+ ...|-.|-..|...+.++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcch
Confidence 444579999999999884 334556777787877777654 554 335666667777777777
Q ss_pred HHHHHHhcCC--CCC-hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCC
Q 035847 202 VAHCKFSKIK--QKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKG 277 (523)
Q Consensus 202 ~A~~vf~~m~--~~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~ 277 (523)
.|...+.+.. .|+ .+.+..|-. -|...|..+-|+..|++-.+ +.|+ ...|+.|-.|+-..|+
T Consensus 270 ~Avs~Y~rAl~lrpn~A~a~gNla~------------iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 270 RAVSCYLRALNLRPNHAVAHGNLAC------------IYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHHHhcCCcchhhccceEE------------EEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccc
Confidence 7777666543 343 456777766 88899999999999999876 5676 5789999999999999
Q ss_pred hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHH
Q 035847 278 FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCC 356 (523)
Q Consensus 278 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~ 356 (523)
+.+|...+.......- ...-+-|.|-..|...|.+ ++|.++|.... .+.|. ...++.
T Consensus 336 V~ea~~cYnkaL~l~p-----------------~hadam~NLgni~~E~~~~--e~A~~ly~~al---~v~p~~aaa~nN 393 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLCP-----------------NHADAMNNLGNIYREQGKI--EEATRLYLKAL---EVFPEFAAAHNN 393 (966)
T ss_pred hHHHHHHHHHHHHhCC-----------------ccHHHHHHHHHHHHHhccc--hHHHHHHHHHH---hhChhhhhhhhh
Confidence 9999999988876421 1234678899999999999 99999998775 45677 578899
Q ss_pred HHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHH
Q 035847 357 MVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424 (523)
Q Consensus 357 li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
|-..|-..|++++|...+++ +.++|... ..|++..|.....+.+..+|.-....+.+.+-++..|.+.
T Consensus 394 La~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 394 LASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 99999999999999999887 56777766 5677778888889999999987777777888888899998
Q ss_pred HHHHH
Q 035847 425 KISEK 429 (523)
Q Consensus 425 ~~~~~ 429 (523)
++...
T Consensus 474 ~AI~s 478 (966)
T KOG4626|consen 474 EAIQS 478 (966)
T ss_pred HHHHH
Confidence 88643
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.28 E-value=1.6e-08 Score=109.59 Aligned_cols=243 Identities=8% Similarity=0.001 Sum_probs=157.6
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc--chHHHHHHHHHhcCCchHHHHHHHHhhHcc--
Q 035847 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV--FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-- 100 (523)
Q Consensus 25 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 100 (523)
|...|-. .+.|+++.|...+.+..+.. |+. ..+ .++..+...|+.++|+..+++.....
T Consensus 38 y~~aii~-~r~Gd~~~Al~~L~qaL~~~---------------P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~ 100 (822)
T PRK14574 38 YDSLIIR-ARAGDTAPVLDYLQEESKAG---------------PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI 100 (822)
T ss_pred HHHHHHH-HhCCCHHHHHHHHHHHHhhC---------------ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC
Confidence 4444433 36777888888877777653 332 233 66777777788888888777766332
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---------------cc
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---------------DF 158 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~---------------~~ 158 (523)
+...+...|+++.|.++++.+.+.. +-+..++..++..|.+.++.++|+..++++ ..
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHH
Confidence 2335556677888888888777663 234566667777777778888887777772 00
Q ss_pred cccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCh-------------------
Q 035847 159 SNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHL------------------- 215 (523)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~------------------- 215 (523)
...+....+.+.+..+++. .| +...+..++....+.|-...|.++..+-++ +..
T Consensus 180 ~~~~~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 180 RATDRNYDALQASSEAVRL---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HhcchHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 0112222244444444544 34 466777888888888888888877765441 000
Q ss_pred ---------------hhHHHHHHhhhhcCC-c-----------cccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 216 ---------------VSWNAMLAGYALGGF-R-----------EEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 216 ---------------~t~~~li~~~~~~g~-~-----------~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.-+..++. +-+. + +.+.++...|+..++++.|+.|...|.+...++-..+
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~---~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLT---RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHh---hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 01112221 1111 1 1177888899999999999999998877566688889
Q ss_pred HHHhhccCChhHHHHHHHHHHHh
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.++|...+.+++|..++..+...
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhc
Confidence 99999999999999999988664
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.25 E-value=1.2e-08 Score=112.72 Aligned_cols=381 Identities=10% Similarity=-0.004 Sum_probs=237.3
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHH-HHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALI-FQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK 64 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~ 64 (523)
+++|+..++ .......|+..+.... .+.+...++++.+..++..+.+.+........ ++..
T Consensus 163 ~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~ 241 (987)
T PRK09782 163 LPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQ 241 (987)
T ss_pred HHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhch
Confidence 355666666 3333444445555555 78888899999999999998887654333211 2333
Q ss_pred CCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------------------------------------HHH
Q 035847 65 MPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------------------------------------VYK 103 (523)
Q Consensus 65 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------------------------------------ll~ 103 (523)
..+.|...+..+...|.+.|+.++|.++++++.... .+.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 334578889999999999999999999999886542 133
Q ss_pred HhhccCChHHHHHHH-----------------------------HHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 104 ACSELKDHRVGKDVY-----------------------------DYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~-----------------------------~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
-+.+.++.+.+.++. ..|.+.. +-+....--+--...+.|+.++|.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 333444443333331 1121110 0011112222222344566777777776
Q ss_pred hcccc---------------------------------------------ccCchhhHhhHhhhhhhcCCC-CC--chhH
Q 035847 155 EKDFS---------------------------------------------NLSLLKHGKEIHPHHLKKDDL-ES--DLLV 186 (523)
Q Consensus 155 ~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~g~-~~--d~~~ 186 (523)
++ .. -.+....+........+..+. .+ +...
T Consensus 401 ~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 401 QR-YPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred Hh-cCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 62 11 011111111111122222122 22 4566
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
|..+-..+.. |+.++|...|.+.. .|+. |+.+..++ .+.+.|++++|...|+++... .|+...
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--~~~L~lA~----------al~~~Gr~eeAi~~~rka~~~--~p~~~a 544 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--WQHRAVAY----------QAYQVEDYATALAAWQKISLH--DMSNED 544 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCch--HHHHHHHH----------HHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence 7777777776 78888888766554 3553 44443311 445789999999999987553 455555
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH-hh------------h----CCCCCcchHHHHHHHHHhcC
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI-SI------------Q----GLGTGSFVWNSLIDMYGRCG 327 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li-~~------------y----~~~p~~~~~n~li~~~~~~g 327 (523)
+..+..++.+.|+.+.|.+.+...++..... ...+..+. .. | .+.|+...|..+-..+.+.|
T Consensus 545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 545 LLAAANTAQAAGNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 6666677788899999999998888764222 22222211 11 1 34677778888888899999
Q ss_pred CCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHH
Q 035847 328 AIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEH 394 (523)
Q Consensus 328 ~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~ 394 (523)
+. ++|...|++.... .|+ ...++.+-..+...|+.++|...+++. ...|+.. ..|+.+.|+.
T Consensus 624 ~~--deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 624 NV--PAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99 8999999888754 565 566777777888899999999888873 4667666 7888888999
Q ss_pred HHHHHHhhCCCCC
Q 035847 395 AARHLFELEPLSS 407 (523)
Q Consensus 395 ~~~~l~~~~~~~~ 407 (523)
.+++.++++|.+.
T Consensus 699 ~l~~Al~l~P~~a 711 (987)
T PRK09782 699 YARLVIDDIDNQA 711 (987)
T ss_pred HHHHHHhcCCCCc
Confidence 9999998888765
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.25 E-value=2.9e-08 Score=106.83 Aligned_cols=321 Identities=13% Similarity=0.013 Sum_probs=214.6
Q ss_pred chhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhC-CCcchHHH----------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLG----------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~----------------~f~ 63 (523)
++++|++.+....+. .| +...|..+-.++...|++++|..-+..+.... +....... .++
T Consensus 175 ~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~ 252 (615)
T TIGR00990 175 DWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILE 252 (615)
T ss_pred CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888887764 44 44578888888999999999987665443221 11100000 111
Q ss_pred CCCCCCcchHHHHHH------------------------------HH------HhcCCchHHHHHHHHhhHcc-------
Q 035847 64 KMPERNVFSWTSMMG------------------------------MY------NVLGYYEEIVNLFYLLIDEG------- 100 (523)
Q Consensus 64 ~~~~~~~~~~~~li~------------------------------~~------~~~g~~~~A~~l~~~m~~~g------- 100 (523)
.- .++..+|..+-. .+ ...+++++|++.|++....+
T Consensus 253 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 253 TK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred cC-CCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 11 111111111100 00 11256778888887776532
Q ss_pred -----HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 -----VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 -----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+-..+...|++++|...++..++. .|+ ...|..+...|...|++++|...|++ +
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~------------------a 391 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDK------------------A 391 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH------------------H
Confidence 333344678888888888887765 344 44677777778888888888888887 1
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
++. -..+..+|..+...|...|++++|...|+...+ | +...|..+-. .+.+.|++++|+..|+
T Consensus 392 l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~------------~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 392 LKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV------------TQYKEGSIASSMATFR 457 (615)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH------------HHHHCCCHHHHHHHHH
Confidence 222 223467888899999999999999999988753 4 4556666766 7888999999999999
Q ss_pred HHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc-chHHHHHHHHHhcCCC
Q 035847 252 RMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-FVWNSLIDMYGRCGAI 329 (523)
Q Consensus 252 ~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~-~~~n~li~~~~~~g~~ 329 (523)
+..+. .| +...|+.+-..+...|++++|.+.++..++..-..+.. ..+. ..++..+..|...|+.
T Consensus 458 ~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~-----------~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 458 RCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM-----------YMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred HHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc-----------cccHHHHHHHHHHHHHHhhhH
Confidence 98764 34 46778888888999999999999999987743211100 0011 1223333344556899
Q ss_pred chHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 330 QKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
++|..+++...+. .|+ ...+..+...+.+.|++++|.+++++.
T Consensus 525 --~eA~~~~~kAl~l---~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 525 --IEAENLCEKALII---DPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred --HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999987654 455 457889999999999999999999884
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=4e-10 Score=116.10 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=178.3
Q ss_pred HHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCch
Q 035847 8 LLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYE 87 (523)
Q Consensus 8 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 87 (523)
.++-.|...|+.||.+||.++|.-||..|+.+.|. +|..|....+ .-+...++.++.+..++++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-------------pv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-------------PVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-------------cccchhHHHHHhccccccccc
Confidence 45667888899999999999999999999999888 8888876654 335677888888888877776
Q ss_pred HHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH---HHHHhhhc--cccccC
Q 035847 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM---ASGEFEEK--DFSNLS 162 (523)
Q Consensus 88 ~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~f~~~--~~~~~~ 162 (523)
.+. .|...+|+.|..+|...||+.. ..+.++.. .++..|
T Consensus 77 npk------------------------------------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~G 120 (1088)
T KOG4318|consen 77 NPK------------------------------------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHG 120 (1088)
T ss_pred CCC------------------------------------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhc
Confidence 554 4667788888888888888654 22211110 222222
Q ss_pred chhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhcc
Q 035847 163 LLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQY 240 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~ 240 (523)
.......+.-.+--..+.-||.. ..|....-.|-++.+.+++..++. .+. +.-..|. -....
T Consensus 121 vgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLr------------qnv~~ 184 (1088)
T KOG4318|consen 121 VGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLR------------QNVVD 184 (1088)
T ss_pred cCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHH------------HhccC
Confidence 22222222221111224455543 334444556778888888877763 111 1111344 33333
Q ss_pred CCchHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 241 GDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 241 g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
..+ ..++ ..|.+.+. .|++.+|..++.+-.-.|+++.|..++..|.+.|++.+.. -|-.|
T Consensus 185 ntp--vekL-l~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H----------------yFwpL 245 (1088)
T KOG4318|consen 185 NTP--VEKL-LNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH----------------YFWPL 245 (1088)
T ss_pred Cch--HHHH-HHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc----------------cchhh
Confidence 322 2222 22333333 5999999999999999999999999999999999887542 22333
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
|-| .+.. .-+..+++.|+.. |+.|+.+||.-.+-.+..+|....+..
T Consensus 246 l~g---~~~~--q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 246 LLG---INAA--QVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred hhc---Cccc--hHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhhhhccc
Confidence 333 5666 6677788888876 999999999988888877666554433
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=5.5e-09 Score=99.76 Aligned_cols=308 Identities=13% Similarity=0.191 Sum_probs=200.6
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH--HhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG--MFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
.|=|.|++.. .+|.+..+--+++.|.+.|...+.-+. +|+ |+.-|-...-+-.-.+-|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~------------LV~~~Ns~~~~~~E~~~Fv~~~~~~ 183 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFR------------LVTYYNSSNVPFAEWEEFVGMRNFG 183 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHH------------HHHhhcCCCCcchhHHHHhhccccc
Confidence 3556666654 467788888999999998875433222 221 1111111111112233344444333
Q ss_pred -HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc-------------ccccCchhh
Q 035847 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD-------------FSNLSLLKH 166 (523)
Q Consensus 101 -ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------------~~~~~~~~~ 166 (523)
=-..-.+.|++ |. ++.+. .+.+..+|.++|.+.||-...+.|..++.+.. .-....+..
T Consensus 184 E~S~~sWK~G~v--Ad-L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 184 EDSTSSWKSGAV--AD-LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred cccccccccccH--HH-HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 00000011111 22 22221 24455677777777777777777777776631 111123445
Q ss_pred HhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH----HHHhcCC----CCChhhHHHHHHhhhhcCCccccchhh
Q 035847 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH----CKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~----~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
++.+...|... ...||..|+|+++...++.|+++.|+ +++.+|+ +|...||.-+|. -++
T Consensus 257 ~K~Lv~EMisq-km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik------------~f~ 323 (625)
T KOG4422|consen 257 GKKLVAEMISQ-KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIK------------NFK 323 (625)
T ss_pred cHHHHHHHHHh-hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH------------Hhc
Confidence 67777777777 89999999999999999999988765 4556665 599999999999 777
Q ss_pred ccCCchH-HHHHHHHHHh----cCCCC----CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC
Q 035847 239 QYGDGET-ALEFFSRMIQ----TDMQP----NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309 (523)
Q Consensus 239 ~~g~~~~-A~~lf~~M~~----~g~~p----~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 309 (523)
+.+++.+ |..+..+.+. ..++| |...|.+.++.|.++.+.+.|.++++.+....-.. -+
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~------------~i 391 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK------------FI 391 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------hc
Confidence 8777654 5555555544 23444 56778899999999999999999998876521100 01
Q ss_pred CCC---cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 310 GTG---SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 310 ~p~---~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
.|+ .+=|..+....|+.... +.-+..++.|.-. -+-|+..+...++++..-.|+++-.-+++.+|.
T Consensus 392 g~~~~~~fYyr~~~~licq~es~--~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~ 460 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESI--DVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK 460 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 122 23356688888888888 8899999999876 678888999999999999999999888888873
No 29
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.15 E-value=7.5e-08 Score=97.57 Aligned_cols=270 Identities=11% Similarity=0.094 Sum_probs=203.5
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VYKA 104 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll~~ 104 (523)
.|+++.|++......+.+- . ....|-.......+.|+++.|.+.|.++.+.. ....
T Consensus 97 eGd~~~A~k~l~~~~~~~~-------------~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE-------------Q-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI 162 (398)
T ss_pred CCCHHHHHHHHHHHHhccc-------------c-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 5888888876665433210 1 12334333344478899999999999987753 1345
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
+...|+.+.|.+.++...+.. +-+..+...+...|.+.|++++|..++.. +++.+..++.
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~-------------------l~k~~~~~~~ 222 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPS-------------------MAKAHVGDEE 222 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHH-------------------HHHcCCCCHH
Confidence 667899999999999998875 44678899999999999999999999999 6553433222
Q ss_pred -------hHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH
Q 035847 185 -------LVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254 (523)
Q Consensus 185 -------~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~ 254 (523)
.+|..++....+..+.+...++++.+++ .+......+.. .+...|+.++|.+++++..
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~------------~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAE------------HLIECDDHDTAQQIILDGL 290 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHH
Confidence 2344555555566677888888888864 36667777777 8889999999999999988
Q ss_pred hcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHH
Q 035847 255 QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEG 334 (523)
Q Consensus 255 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a 334 (523)
+. .||... .++.+....++.+.+.+..+...+.. +-|.....++-..+.+.+++ ++|
T Consensus 291 ~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-----------------P~~~~l~l~lgrl~~~~~~~--~~A 347 (398)
T PRK10747 291 KR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-----------------GDTPLLWSTLGQLLMKHGEW--QEA 347 (398)
T ss_pred hc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHCCCH--HHH
Confidence 74 455522 23344455689999999988887642 12344577788889999999 999
Q ss_pred HHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 335 WRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 335 ~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+.|+...+. .|+..+|..|..++.+.|+.++|.+++++
T Consensus 348 ~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 348 SLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999854 79999999999999999999999999886
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.11 E-value=4.5e-10 Score=108.44 Aligned_cols=255 Identities=17% Similarity=0.228 Sum_probs=107.3
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhc
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~ 107 (523)
+-..+.+.|+++.|.+++........ +..|..-|..+-...-..++.++|++.++++...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~------- 74 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIA------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD------- 74 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc------------ccccccccccccccccccccccccccccccccccc-------
Confidence 34555566777777776643322210 01233444444434444566666666666665543
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.-+...+..++.. ...+++++|..+++++ .+. .++...+
T Consensus 75 -------------------~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~------------------~~~---~~~~~~l 113 (280)
T PF13429_consen 75 -------------------KANPQDYERLIQL-LQDGDPEEALKLAEKA------------------YER---DGDPRYL 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------ccccccccccccc-cccccccccccccccc------------------ccc---ccccchh
Confidence 3356677777777 7889999999988770 222 3456677
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC-----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIK-----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN- 261 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~-----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~- 261 (523)
..++..|.+.++.+++..+++... .++...|..+.. .+.+.|+.++|++.|++..+. .|+
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~------------~~~~~G~~~~A~~~~~~al~~--~P~~ 179 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE------------IYEQLGDPDKALRDYRKALEL--DPDD 179 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH------------HHHHCCHHHHHHHHHHHHHHH---TT-
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHc--CCCC
Confidence 788899999999999999988754 245667777777 888999999999999999874 564
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 262 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
....+.++..+...|+.+++.+++....+.. ..|...|..+-.+|...|+. ++|..+|+..
T Consensus 180 ~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~la~~~~~lg~~--~~Al~~~~~~ 240 (280)
T PF13429_consen 180 PDARNALAWLLIDMGDYDEAREALKRLLKAA-----------------PDDPDLWDALAAAYLQLGRY--EEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCCHCHHHHHHHHHHT-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----------------cCHHHHHHHHHHHhcccccc--cccccccccc
Confidence 6678888889999999999999888887743 23567788999999999999 9999999998
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+. -+.|......+.+++...|+.++|.++.++.
T Consensus 241 ~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHH--STT-HHHHHHHHHHHT---------------
T ss_pred ccc--ccccccccccccccccccccccccccccccc
Confidence 875 2336788889999999999999999987663
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.10 E-value=2.5e-07 Score=100.51 Aligned_cols=167 Identities=7% Similarity=0.030 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---------ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQK---------HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~~---------~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~ 254 (523)
..+--++.++|...+..++|..+++....+ +......|.- +|..++++++|..+++++.
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y------------A~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY------------SLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH------------HHHhcccHHHHHHHHHHHH
Confidence 345556667777777777777777765321 1222345555 8888999999999999998
Q ss_pred hcC-------------CCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHH
Q 035847 255 QTD-------------MQPNTISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320 (523)
Q Consensus 255 ~~g-------------~~p~~~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li 320 (523)
+.- ..||-..+ ..+...+...|++.+|++.++.+.... +-|...++.+-
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-----------------P~n~~l~~~~A 457 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-----------------PANQNLRIALA 457 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHH
Confidence 731 12333333 334556788899999999999987632 34677888899
Q ss_pred HHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 321 DMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 321 ~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
+.+...|.+ .+|...++... .+.|+ ..+.......+...|++++|..++++. ...|+..
T Consensus 458 ~v~~~Rg~p--~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 458 SIYLARDLP--RKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhcCCH--HHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 999999999 99999996665 44676 466667778888889999998888664 2345443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=2e-07 Score=103.24 Aligned_cols=220 Identities=12% Similarity=-0.038 Sum_probs=156.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
++.++|...+...... .|+......+...+.+.|++++|...|++ ... ..|+...+.
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rk-------------------a~~--~~p~~~a~~ 546 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQK-------------------ISL--HDMSNEDLL 546 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHH-------------------Hhc--cCCCcHHHH
Confidence 5666666666555544 46644333344455688999999999987 433 234444566
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.+...+.+.|+.++|...|+...+.+...++....... ...+.|++++|+..|++..+. .|+...|..+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~---------~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA---------QRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66778888999999999998765432222222221000 333559999999999988764 5677788888
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~ 348 (523)
-.++.+.|+.++|.+.+...++.. +.+...++.+-..+...|+. ++|..+|++..+. .
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~-----------------Pd~~~a~~nLG~aL~~~G~~--eeAi~~l~~AL~l---~ 673 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELE-----------------PNNSNYQAALGYALWDSGDI--AQSREMLERAHKG---L 673 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---C
Confidence 888999999999999998887742 22445677777889999999 9999999888764 5
Q ss_pred cC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 349 PA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 349 p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
|+ ...+..+-.++...|++++|...+++. ...|+..
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 55 577788888999999999999998884 6777776
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.05 E-value=5.2e-10 Score=108.01 Aligned_cols=240 Identities=14% Similarity=0.156 Sum_probs=106.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhc-cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRC-PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
++++|++++..-.....+|+...|-.++..+ ...++.+.|...++.+...+- -+...+..++..
T Consensus 23 ~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--------------~~~~~~~~l~~l- 87 (280)
T PF13429_consen 23 DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--------------ANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------cccccccccccc-
Confidence 4678999986544443356666666665544 467899999999999987763 355667777777
Q ss_pred HhcCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhc-CCCCceeHhHHHHHHHhcCCHHHHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIK-FEGNACVKRPVLDMFIKCGRMEMASG 151 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~ 151 (523)
...+++++|++++....+.. ++..+...++.+.+.++++.+.... ..++...|..+-..+.+.|+.++|.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78999999999987764433 6777788999999999999987543 35678889999999999999999999
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhh
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYAL 227 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~ 227 (523)
.|+++ ++. .| |..+.+.++..+...|+.+++..++....+ .|...|..+-.
T Consensus 168 ~~~~a------------------l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~---- 222 (280)
T PF13429_consen 168 DYRKA------------------LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA---- 222 (280)
T ss_dssp HHHHH------------------HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH----
T ss_pred HHHHH------------------HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH----
Confidence 99991 333 55 477889999999999999998888876643 45667888888
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+|...|+.++|+..|++..... +.|..+...+..++...|+.++|.++..++.+
T Consensus 223 --------~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 223 --------AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --------HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred --------Hhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 8889999999999999988742 23677788888999999999999999877654
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.02 E-value=4.3e-07 Score=92.54 Aligned_cols=273 Identities=9% Similarity=0.029 Sum_probs=194.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-cchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------HH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------VY 102 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------ll 102 (523)
..|+++.|.+......+.. |+ ...|-..-..+.+.|+++.|.+.|.+..+.. ..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~---------------~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA---------------AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC---------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 5789999999887765542 33 2333344456667799999999998864431 24
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (523)
......|+.+.|.+.++.+.+.. +-+..++..+...|.+.|+++.|.+.+.. ..+.+..+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~-------------------l~k~~~~~ 220 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDN-------------------MAKAGLFD 220 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH-------------------HHHcCCCC
Confidence 44456899999999999999875 44667889999999999999999999999 55534433
Q ss_pred chhH-------HHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 183 DLLV-------NNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 183 d~~~-------~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.... +..+++.-......+...+.++..++ .+...+..+.. .+.+.|+.++|.+++++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~------------~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAE------------HLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH------------HHHHCCChHHHHHHHHH
Confidence 2222 22222222233345566667777664 37778888888 88999999999999999
Q ss_pred HHhcCCCCCHHHHH-HHHHH--hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc---chHHHHHHHHHhc
Q 035847 253 MIQTDMQPNTISLS-GVLAA--CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS---FVWNSLIDMYGRC 326 (523)
Q Consensus 253 M~~~g~~p~~~t~~-~ll~a--~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~---~~~n~li~~~~~~ 326 (523)
..+. .||..... .++.. ....++.+.+.+.++...+. .|+. ....++-..+.+.
T Consensus 289 ~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~------------------~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 289 GLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN------------------VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh------------------CCCChhHHHHHHHHHHHHHc
Confidence 9885 34443210 12222 23346777777777766653 2333 3445777888999
Q ss_pred CCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
|++ ++|.++|+..... ...|+...+..+...+-+.|+.++|.+++++
T Consensus 349 ~~~--~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 349 GEF--IEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ccH--HHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999 9999999953332 5589999999999999999999999999887
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.96 E-value=3.6e-07 Score=92.62 Aligned_cols=270 Identities=9% Similarity=-0.014 Sum_probs=195.6
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHH--HHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWT--SMMGMY 80 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~--~li~~~ 80 (523)
+++|.+.+..-.+.+-.| ...|-....+..+.|+++.+...+..+.+. .|+...+- .....+
T Consensus 100 ~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---------------~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 100 YQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL---------------ADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHH
Confidence 456666666544432111 222333344446899999999999998764 34443332 335678
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-------eeHhHHHHHHHhcC
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-------CVKRPVLDMFIKCG 144 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 144 (523)
...|+++.|...++++.+.. +...+.+.|+++.+.+++..+.+.+..++. .+|..++....+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999998776 788888999999999999999988754322 23344455444555
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG 224 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~ 224 (523)
+.+...++++. .-. ....++....++...+.+.|+.++|.+++++..+.....--.++.
T Consensus 244 ~~~~l~~~w~~-------------------lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~- 302 (398)
T PRK10747 244 GSEGLKRWWKN-------------------QSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLI- 302 (398)
T ss_pred CHHHHHHHHHh-------------------CCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHH-
Confidence 56666666666 322 234577888999999999999999999998765422222222334
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 303 (523)
+....++++++++..+...+. .|+. ..+..+-..|.+.+++++|.+.++...+.
T Consensus 303 -----------~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~------------ 357 (398)
T PRK10747 303 -----------PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ------------ 357 (398)
T ss_pred -----------hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------
Confidence 556679999999999999875 4554 45677888899999999999999999874
Q ss_pred HhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 304 i~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
.|+..+|-.|-..+.+.|+. ++|.+++++-.
T Consensus 358 ------~P~~~~~~~La~~~~~~g~~--~~A~~~~~~~l 388 (398)
T PRK10747 358 ------RPDAYDYAWLADALDRLHKP--EEAAAMRRDGL 388 (398)
T ss_pred ------CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHH
Confidence 56778888899999999999 99999988653
No 36
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2e-09 Score=66.71 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=32.1
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+.||..+||+||++|||.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999995
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.85 E-value=2.1e-06 Score=79.82 Aligned_cols=279 Identities=17% Similarity=0.154 Sum_probs=164.4
Q ss_pred chhHHHHHHHHhhhCCCCCCcc-hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcc------hHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTV-TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVF------SWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~------~~~ 74 (523)
+.++|.++|-+|.+. .|..+ +--+|=+.|-+.|..+.|.++|..+.++ ||.. .--
T Consensus 50 Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------------pdlT~~qr~lAl~ 111 (389)
T COG2956 50 QPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------------PDLTFEQRLLALQ 111 (389)
T ss_pred CcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------CCCchHHHHHHHH
Confidence 356677777777653 22222 2223334555666777777777766542 2221 122
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
-|-.-|...|-++.|..+|..+.++| ..-....--|+..|-+..+|++|..+-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~--------------------------efa~~AlqqLl~IYQ~treW~KAId~A~ 165 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEG--------------------------EFAEGALQQLLNIYQATREWEKAIDVAE 165 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcch--------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 23344555566666666665555543 2223345567788888888888887777
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCc----hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhc
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALG 228 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~ 228 (523)
+ +...+-.+. ..-|.-|-..+.-..+++.|..++....+ |+-+--+.++.
T Consensus 166 ~-------------------L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG----- 221 (389)
T COG2956 166 R-------------------LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG----- 221 (389)
T ss_pred H-------------------HHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh-----
Confidence 6 322122221 12334444555556778888888876654 33222222221
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
+ -+...|+++.|++.++...+.+..--..+...|..+|...|+.+++...+..+.+..-.++
T Consensus 222 -~-----v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~------------ 283 (389)
T COG2956 222 -R-----VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD------------ 283 (389)
T ss_pred -H-----HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc------------
Confidence 0 5567888999999998888876655667777888888889999888888877766432222
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHH---hhCCHHHHHHHHHhC
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA---RAGQFDDTLNFMKKM 377 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~---~~g~~~~A~~~~~~m 377 (523)
.-+.|-.--....-. +.|..++.+-... +|+...+..+|+.-. ..|...+-+.++++|
T Consensus 284 ------~~l~l~~lie~~~G~--~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 284 ------AELMLADLIELQEGI--DAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred ------HHHHHHHHHHHhhCh--HHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHH
Confidence 112222222222223 6677766655544 799999999998654 344566666666666
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.84 E-value=4.5e-07 Score=84.12 Aligned_cols=189 Identities=12% Similarity=0.042 Sum_probs=134.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
...|..+...|...|++++|++.|++..... +...+...|+.+.|.+.+....+.. +.+...+..+...|
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3455556666666666666666666654432 4444555666666666666666553 34556778888899
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chhh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVS 217 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t 217 (523)
...|++++|.+.|+++ +...........+..+...|.+.|+.++|...|+...+ | +...
T Consensus 110 ~~~g~~~~A~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQA------------------IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171 (234)
T ss_pred HHcccHHHHHHHHHHH------------------HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHH
Confidence 9999999999999981 11111122345677788889999999999999987653 3 3457
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
|..+.. .+.+.|++++|.+.+++..+. ...+...+..+...+...|+.+.+..+.+.+.+
T Consensus 172 ~~~la~------------~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 172 LLELAE------------LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHH------------HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777 888999999999999998876 344566677777778888999999988777654
No 39
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=6.9e-09 Score=64.28 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=26.2
Q ss_pred CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
|+.||..||++||++||+.|++++|.+++++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 777888888888888888888888888888773
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.78 E-value=1e-06 Score=81.68 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=155.2
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
....+..+...|.+.|++++|...|++ ... ..+.+...+..+...|...|+.++|.+.|+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~l~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 89 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDK-------------------ALE-HDPDDYLAYLALALYYQQLGELEKAEDSFR 89 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345677888999999999999999998 322 123346788889999999999999999998
Q ss_pred cCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHH
Q 035847 209 KIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
...+ .+...+..+.. .+...|++++|.+.|++.......| +...+..+-..+...|+.++|.+.
T Consensus 90 ~al~~~~~~~~~~~~~~~------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 90 RALTLNPNNGDVLNNYGT------------FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHhhCCCCHHHHHHHHH------------HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7653 34456777777 8889999999999999998753333 345566677788899999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
+....+.. +.+...|..+...+...|+. ++|..++++..+. ..++...+..+...+...
T Consensus 158 ~~~~~~~~-----------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 158 LTRALQID-----------------PQRPESLLELAELYYLRGQY--KDARAYLERYQQT--YNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHhC-----------------cCChHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence 99887742 12345678888999999999 9999999998865 244567777888889999
Q ss_pred CCHHHHHHHHHhC
Q 035847 365 GQFDDTLNFMKKM 377 (523)
Q Consensus 365 g~~~~A~~~~~~m 377 (523)
|+.++|..+.+.+
T Consensus 217 ~~~~~a~~~~~~~ 229 (234)
T TIGR02521 217 GDVAAAQRYGAQL 229 (234)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999987765
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=1.4e-06 Score=88.24 Aligned_cols=285 Identities=12% Similarity=0.066 Sum_probs=197.3
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
+.++|+.+|...... +.-+......+-++|-..+++++++.+|+.+.+..- +...++..|.+.+--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p-----------~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEP-----------YRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------ccccchhHHHHHHHHHH
Confidence 356777777774332 222234455555677777778888888777776431 11346667776665432
Q ss_pred hcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccccc
Q 035847 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNL 161 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 161 (523)
+ +-++..+.+ ++.+ . -+-.+.+|-++-+.|+-.++.+.|.+.|++|
T Consensus 402 ~----~v~Ls~Laq--------------------~Li~----~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RA----- 447 (638)
T KOG1126|consen 402 D----EVALSYLAQ--------------------DLID----T-DPNSPESWCALGNCFSLQKDHDTAIKCFKRA----- 447 (638)
T ss_pred h----hHHHHHHHH--------------------HHHh----h-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-----
Confidence 1 222222211 1111 1 1345789999999999999999999999982
Q ss_pred CchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhcc
Q 035847 162 SLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY 240 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~ 240 (523)
+ .+.| ..++|+.+-+-+.-...+|.|..-|+.....|...||+.-. .|. .|.+.
T Consensus 448 -------------i---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG----lG~-----vy~Kq 502 (638)
T KOG1126|consen 448 -------------I---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG----LGT-----VYLKQ 502 (638)
T ss_pred -------------h---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh----hhh-----heecc
Confidence 1 3566 67888888888888889999999999988888877776432 111 78899
Q ss_pred CCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 241 GDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 241 g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
++++.|+-.|+...+ +.| |.+....+...+-+.|+.|+|.++++......- .|..+-=-.
T Consensus 503 ek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-----------------kn~l~~~~~ 563 (638)
T KOG1126|consen 503 EKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-----------------KNPLCKYHR 563 (638)
T ss_pred chhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-----------------CCchhHHHH
Confidence 999999999998876 445 456666677778889999999999999876432 233333334
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCC
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEP 381 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p 381 (523)
+..+...++. ++|+..|+++++ +.|+ ...|..+...|-+.|+.+.|+.-|.- |.++|
T Consensus 564 ~~il~~~~~~--~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRY--VEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcch--HHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5556667788 999999999975 4677 57788888999999999999866544 34444
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.76 E-value=4.5e-06 Score=85.08 Aligned_cols=276 Identities=10% Similarity=0.017 Sum_probs=184.6
Q ss_pred chHHHHHHHHH--hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHH
Q 035847 71 FSWTSMMGMYN--VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVL 137 (523)
Q Consensus 71 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li 137 (523)
..+..+..|.. ..|+++.|.+.+.+..+.. ...+....|+.+.+.+.+....+. .|+.. +.-...
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a 160 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHH
Confidence 34555666654 3699999999998776653 344556779999999999998765 35543 344457
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK---H 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~---~ 214 (523)
..+...|+++.|...++. +.. .-+-+..+...+...|...|++++|.+++..+.+. +
T Consensus 161 ~l~l~~~~~~~Al~~l~~-------------------l~~-~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 161 RILLAQNELHAARHGVDK-------------------LLE-MAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHCCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 888889999999999998 555 22335678889999999999999999999988753 2
Q ss_pred hhhHHHH-HHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC---CCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 215 LVSWNAM-LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM---QPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 215 ~~t~~~l-i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
...+..+ ..++. +....+..+++.+.+..+.+... +.+...+..+...+...|+.+.|.++++...+
T Consensus 221 ~~~~~~l~~~a~~---------~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 221 DEEFADLEQKAEI---------GLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 2223111 11110 22223333344455555554321 23778888888999999999999999999887
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchH-HHHHHHH--HhcCCCchHHHHHHHHHhHHhcCCccCHh---HHHHHHHHHHhh
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVW-NSLIDMY--GRCGAIQKNEGWRYFEMMKKEYNMEPAME---QYCCMVDLLARA 364 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~-n~li~~~--~~~g~~~~~~a~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~ 364 (523)
.. ||...- -.++..+ ...++. +.+.+.++...+. .|+.. ...++-..+.+.
T Consensus 292 ~~------------------pd~~~~~~~~l~~~~~l~~~~~--~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 292 KL------------------GDDRAISLPLCLPIPRLKPEDN--EKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred hC------------------CCcccchhHHHHHhhhcCCCCh--HHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHc
Confidence 53 222210 0122322 334566 7888888887765 45544 455788889999
Q ss_pred CCHHHHHHHHHh---CCCCCCCC----------CCCCHHHHHHHHHHHH
Q 035847 365 GQFDDTLNFMKK---MPFEPSSA----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 365 g~~~~A~~~~~~---m~~~p~~~----------~~~~~~~~~~~~~~l~ 400 (523)
|++++|.+.|+. ....|+.. ..|+.+.|....++.+
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999993 44566655 4455555555554443
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.76 E-value=6.4e-06 Score=78.87 Aligned_cols=262 Identities=11% Similarity=0.111 Sum_probs=198.3
Q ss_pred HHHHHHHHh--cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh
Q 035847 74 TSMMGMYNV--LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK 142 (523)
Q Consensus 74 ~~li~~~~~--~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 142 (523)
..+..|..+ .|++..|.++..+-.+.+ ..++.-..||.+.+-+...+..+.--.++..++-+.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 345566654 599999999998766555 455666789999999999998876446677788888888889
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-------
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL------- 215 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~------- 215 (523)
.|+.+.|..-.++ ... .-..+..+.......|.+.|++.....+...|.+..+
T Consensus 166 ~~d~~aA~~~v~~-------------------ll~-~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 166 RRDYPAARENVDQ-------------------LLE-MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred CCCchhHHHHHHH-------------------HHH-hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 9999999888877 433 2344677889999999999999999999999986433
Q ss_pred ----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 216 ----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 216 ----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+|+.++. -....+..+.-...+++... ..+-+...-.+++.-+.+.|+.++|.++..+..++
T Consensus 226 ~le~~a~~glL~------------q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 226 RLEQQAWEGLLQ------------QARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHHHHHHHHHH------------HHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 37898888 44444444443445555443 24556666677777888899999999999999998
Q ss_pred cCCchHHHHhHHHhhh----------------C-CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH
Q 035847 292 HIQLSTGVGIALISIQ----------------G-LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354 (523)
Q Consensus 292 g~~~~~~~~~~li~~y----------------~-~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty 354 (523)
+.++.... ++... . ..-+.-.+.+|=.-|.+++.+ .+|..+|+.-.+ ..|+..+|
T Consensus 293 ~~D~~L~~---~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w--~kA~~~leaAl~---~~~s~~~~ 364 (400)
T COG3071 293 QWDPRLCR---LIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW--GKASEALEAALK---LRPSASDY 364 (400)
T ss_pred ccChhHHH---HHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH--HHHHHHHHHHHh---cCCChhhH
Confidence 88887222 22222 1 122335677777888899999 999999997664 58999999
Q ss_pred HHHHHHHHhhCCHHHHHHHHHh
Q 035847 355 CCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+-+-+++.+.|+..+|.++.++
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 9999999999999999999877
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.73 E-value=4.4e-05 Score=77.38 Aligned_cols=353 Identities=11% Similarity=0.031 Sum_probs=212.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---------------------ccc
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK---------------------DFS 159 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~---------------------~~~ 159 (523)
+..|+++...++.|+.+++...+. ++.|..+|-+--..=-..|+.+...++.+++ +|.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 778888888889999999888776 6778888888777778889999888888882 555
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH-----------
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA----------- 223 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~----------- 223 (523)
..|..-....|...++.- |++.. -.||+.--+.|.+.+.++-|+.||....+ .+...|.-...
T Consensus 491 ~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 555555555555555544 44332 33566666666666666666666655432 12233333332
Q ss_pred ------hhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 224 ------GYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 224 ------~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+...+...+. .+.+..+|++..|..++....+..-. +...|-..+..-.....++.|+.++.....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 0000000000 11444556666666666555553221 344555555555556666666666655543
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTL 371 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~ 371 (523)
..|+...|.--+..---.+.. ++|.+++++..+. -|+ ...|-.+-..+-+.++++.|.
T Consensus 647 ----------------~sgTeRv~mKs~~~er~ld~~--eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 647 ----------------ISGTERVWMKSANLERYLDNV--EEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ----------------cCCcchhhHHHhHHHHHhhhH--HHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 234556666555556666777 8888888887765 355 345666666777788888887
Q ss_pred HHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHH
Q 035847 372 NFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKK 439 (523)
Q Consensus 372 ~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 439 (523)
+-+.. ...-|++. +.+++-.|+...++..--+|++...|-.-|.-..++|..+.+-..+.+-+++-
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-- 783 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC-- 783 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 77554 45566666 66778888888888887888888777666666666777766643332222222
Q ss_pred cCCcCCchhhhhhHHH-HHHHccccCCCCCcEEEEecccccCCCchhhHhHhhh
Q 035847 440 IGYMKRIPACGHSEKL-ALAFGLISTSPGSPLRVIKNLRMCGDCHSPTKYVSKA 492 (523)
Q Consensus 440 ~g~~pd~~~~~~~~~l-a~a~~l~~~~~~~~~~i~~nl~~~~d~h~~~~~~s~~ 492 (523)
|+ |+.| +.+.-+.+.+...+ +-++-|+.|..=|-.+--|.++
T Consensus 784 ----p~------sg~LWaEaI~le~~~~rkT-ks~DALkkce~dphVllaia~l 826 (913)
T KOG0495|consen 784 ----PS------SGLLWAEAIWLEPRPQRKT-KSIDALKKCEHDPHVLLAIAKL 826 (913)
T ss_pred ----Cc------cchhHHHHHHhccCcccch-HHHHHHHhccCCchhHHHHHHH
Confidence 22 2222 34454555555544 5677899995444333334444
No 45
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.72 E-value=2.2e-07 Score=96.44 Aligned_cols=250 Identities=12% Similarity=0.079 Sum_probs=150.0
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~ 195 (523)
.++..+...|+.|+.+||.++|.-||..|+.+.|- +|.- |+...+..+..+++.++.+..
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~f-------------------m~~ksLpv~e~vf~~lv~sh~ 70 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPF-------------------MEIKSLPVREGVFRGLVASHK 70 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhh-------------------hhcccccccchhHHHHHhccc
Confidence 56777888899999999999999999999999998 8887 776567778889999999999
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH-HHh-------cCCCCCHHHHHH
Q 035847 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR-MIQ-------TDMQPNTISLSG 267 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~-M~~-------~g~~p~~~t~~~ 267 (523)
..++.+.+. +|...||+.|+. +|.++|+... ++..++ |.. .|+.--..-|-.
T Consensus 71 ~And~Enpk-------ep~aDtyt~Ll~------------ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~ 130 (1088)
T KOG4318|consen 71 EANDAENPK-------EPLADTYTNLLK------------AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLM 130 (1088)
T ss_pred ccccccCCC-------CCchhHHHHHHH------------HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHh
Confidence 999988776 788889999999 7777877654 222222 211 222212222222
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH---HHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS---LIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~---li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+. |+..-..+....+...+.+ | .|-.++......|-..-++. +|.-+.... ....++.+..+.-
T Consensus 131 k~~-c~p~~lpda~n~illlv~e-g------lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~n----tpvekLl~~cksl 198 (1088)
T KOG4318|consen 131 KIH-CCPHSLPDAENAILLLVLE-G------LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN----TPVEKLLNMCKSL 198 (1088)
T ss_pred hcc-cCcccchhHHHHHHHHHHH-H------HHHHHHHHHhhCCcccccchHHHHHHHhccCC----chHHHHHHHHHHh
Confidence 222 2221111111111111111 0 01111111101121111111 122222222 3344555544433
Q ss_pred cCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHH
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVH 424 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (523)
.+ .|++.+|..+++.-.-+|+++.|..++.+|.- +.| |-+.--+|.++.|....+
T Consensus 199 ~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke------------------~gf---pir~HyFwpLl~g~~~~q--- 253 (1088)
T KOG4318|consen 199 VE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKE------------------KGF---PIRAHYFWPLLLGINAAQ--- 253 (1088)
T ss_pred hc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH------------------cCC---CcccccchhhhhcCccch---
Confidence 23 69999999999999999999999999999931 111 222224455555522222
Q ss_pred HHHHHHHHHHHHHHHcCCcCCc
Q 035847 425 KISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 425 ~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
.++.+.+.|++.|+.||.
T Consensus 254 ----~~e~vlrgmqe~gv~p~s 271 (1088)
T KOG4318|consen 254 ----VFEFVLRGMQEKGVQPGS 271 (1088)
T ss_pred ----HHHHHHHHHHHhcCCCCc
Confidence 235677899999999997
No 46
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.70 E-value=1.9e-05 Score=82.86 Aligned_cols=306 Identities=13% Similarity=0.180 Sum_probs=212.4
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------H
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------V 101 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------l 101 (523)
.+++ |+++.|..++.++++.. ..+...|-+|-..|-+.|+.++++..+-..-... +
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd--------------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD--------------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC--------------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3444 99999999999999875 3577899999999999999999988774332211 5
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
-....+.|.+..|.-.|.+.++.. +++...+--=+..|-+.|+...|..-|.+ +-.....
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~-------------------l~~~~p~ 273 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQ-------------------LLQLDPP 273 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHH-------------------HHhhCCc
Confidence 555667788999999999998874 44544444567788999999999999988 3220111
Q ss_pred CchhHHH----HHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 182 SDLLVNN----SLMDFYAKCRYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 182 ~d~~~~~----~li~~~~k~g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.|..-.- -.++.|...++-+.|.+.++.-.. -+...+|.++. .|.+...++.|......
T Consensus 274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae------------l~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAE------------LFLKNKQSDKALMKIVD 341 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHH------------HHHHhHHHHHhhHHHHH
Confidence 1222222 235556667777888877776542 23346777777 77788889999998888
Q ss_pred HHhcCCCCCHHHH----------------------H----HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 253 MIQTDMQPNTISL----------------------S----GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 253 M~~~g~~p~~~t~----------------------~----~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
+......||..-+ . -+.-+..+....+....+...+.+..+.++.
T Consensus 342 ~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d--------- 412 (895)
T KOG2076|consen 342 DRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD--------- 412 (895)
T ss_pred HhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh---------
Confidence 8773222222222 1 2233455666667777777777776655543
Q ss_pred hCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA- 384 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 384 (523)
+.-.|.-+.++|...|+. .+|+.+|...... -.--+...|--+-.+|-..|..++|.+.+++. ...|+..
T Consensus 413 -----~~dL~~d~a~al~~~~~~--~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 413 -----DVDLYLDLADALTNIGKY--KEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD 484 (895)
T ss_pred -----hHHHHHHHHHHHHhcccH--HHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh
Confidence 556677788888888988 8899988888875 22333667778888888888889988888874 4566665
Q ss_pred ----------CCCCHHHHHHHHHHHH
Q 035847 385 ----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~ 400 (523)
..|+.+.|..+.+.++
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 6777776666666555
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=6.2e-06 Score=83.71 Aligned_cols=242 Identities=16% Similarity=0.154 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC--CCCCchhHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD--DLESDLLVN 187 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~d~~~~ 187 (523)
..++|...|...... ..-+..+..-+-.+|...++++.|.++|+. ++.. -..-+..+|
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~-------------------~r~~~p~rv~~meiy 393 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSL-------------------VRRIEPYRVKGMEIY 393 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhccccccchhHH
Confidence 567788888884443 222335666778899999999999999998 4431 123367888
Q ss_pred HHHHHHHHhcCChH-HHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHH
Q 035847 188 NSLMDFYAKCRYLK-VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISL 265 (523)
Q Consensus 188 ~~li~~~~k~g~~~-~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~ 265 (523)
.+.+.-+-+.=.+. -|..+.+.++ -...||-++-. .|.-.++.+.|++.|++-.+ +.| ..++|
T Consensus 394 ST~LWHLq~~v~Ls~Laq~Li~~~~-~sPesWca~GN------------cfSLQkdh~~Aik~f~RAiQ--ldp~faYay 458 (638)
T KOG1126|consen 394 STTLWHLQDEVALSYLAQDLIDTDP-NSPESWCALGN------------CFSLQKDHDTAIKCFKRAIQ--LDPRFAYAY 458 (638)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCC-CCcHHHHHhcc------------hhhhhhHHHHHHHHHHHhhc--cCCccchhh
Confidence 88887654433332 2444444433 24468999988 88889999999999999877 456 56777
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
+.+-.-+.....+|.|...|...+. .|+..||+ |--|--.|.+.++. +.|+-.|+...
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al~----~~~rhYnA-------------wYGlG~vy~Kqek~--e~Ae~~fqkA~--- 516 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKALG----VDPRHYNA-------------WYGLGTVYLKQEKL--EFAEFHFQKAV--- 516 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhhc----CCchhhHH-------------HHhhhhheeccchh--hHHHHHHHhhh---
Confidence 7765556667778888888776653 22222222 33455678899999 99999888775
Q ss_pred CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 346 NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 346 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
.+.|. .+..+++...+-+.|+.|+|++++++- .++|..+ ..++.+.|....|++.++-|+++.
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESS 592 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHH
Confidence 46676 566777778888999999999999884 3455544 345555566666666666666553
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=98.60 E-value=6.7e-06 Score=87.11 Aligned_cols=208 Identities=10% Similarity=-0.059 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~ 189 (523)
.++|.+.+++.++.. +-+..++..+-..+...|++++|...|++ .-. ..| +...+..
T Consensus 320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~-------------------Al~--l~P~~~~a~~~ 377 (553)
T PRK12370 320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQ-------------------ANL--LSPISADIKYY 377 (553)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHH--hCCCCHHHHHH
Confidence 344444444444332 33566777777788888999999999988 222 234 3557777
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISL 265 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~ 265 (523)
+-..|...|+.++|...++...+ |+.. .+..+.. .+...|++++|+..+++..... .|+ ...+
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~------------~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~ 444 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW------------ITYYHTGIDDAIRLGDELRSQH-LQDNPILL 444 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH------------HHHhccCHHHHHHHHHHHHHhc-cccCHHHH
Confidence 88888889999999999988753 5432 2333344 4556788899999998877543 343 3345
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..+-.++...|+.++|.+.+..+.... | .+...++.+-..|+..| ++|...++.+.+..
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~~--~---------------~~~~~~~~l~~~~~~~g----~~a~~~l~~ll~~~ 503 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQE--I---------------TGLIAVNLLYAEYCQNS----ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhcc--c---------------hhHHHHHHHHHHHhccH----HHHHHHHHHHHHHh
Confidence 556666778899999999887765421 1 12234555556666666 56777777776654
Q ss_pred CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.-.|....+..++. .-.|+-+.+..+ +++
T Consensus 504 ~~~~~~~~~~~~~~--~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 504 QRIDNNPGLLPLVL--VAHGEAIAEKMW-NKF 532 (553)
T ss_pred hHhhcCchHHHHHH--HHHhhhHHHHHH-HHh
Confidence 55555444444443 344555555555 555
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=3.6e-05 Score=71.77 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=155.0
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCce------eHhHHHHHHHhcCCHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNAC------VKRPVLDMFIKCGRME 147 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~ 147 (523)
+.+.++|.++|-+|.+.. +-+.+.+.|.++.|.++|.-+.++ ||.. +.-.|-.-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 488999999999999876 667777888888888888877743 4422 2334556677788888
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh-hh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG-YA 226 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~-~~ 226 (523)
.|..+|.. +.. --+.-....--|+..|-+..++++|.++-+++.+-+--+|+.-|.- ||
T Consensus 125 RAE~~f~~-------------------L~d-e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 125 RAEDIFNQ-------------------LVD-EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHH-------------------Hhc-chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 88888877 333 1122233455678888888888888887776665444455554431 22
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH-HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV-LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.... .+....+.+.|..++.+-.+.. |+.+--+++ -+.....|+.+.|.+.++.+.+.+..--
T Consensus 185 ELAq-----~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--------- 248 (389)
T COG2956 185 ELAQ-----QALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--------- 248 (389)
T ss_pred HHHH-----HHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH---------
Confidence 1110 3334567788888888777643 444333333 3455667888888888887777543221
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHH-hCCCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMK-KMPFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~-~m~~~p~~ 383 (523)
..+-..|..+|.+.|+. +++..++.++.+. .|....-..|-+.-....-.+.|...+. ...-+|+.
T Consensus 249 -------~evl~~L~~~Y~~lg~~--~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 249 -------SEVLEMLYECYAQLGKP--AEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred -------HHHHHHHHHHHHHhCCH--HHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 12346677888888888 8888888777654 3343333444443333333444544433 34444543
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.52 E-value=0.00012 Score=70.44 Aligned_cols=225 Identities=11% Similarity=-0.009 Sum_probs=135.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-------ee
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-------CV 132 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~ 132 (523)
+...+-+.-......|+++.|..-..+..+.+ ...+|.+.|++.....+...+.+.|.-.|. .+
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 33344444444445555555555444444433 444445555555555555555555433322 13
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
|+.+++=....+..+.-...+++ ... ...-++.+-.+++.-+.++|+.++|.++..+..+
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~-------------------~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKN-------------------QPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHh-------------------ccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44444444333333333333333 222 3444566677888888999999999888766543
Q ss_pred --CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 213 --KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 213 --~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
.|.. +..+. ...+-++.+.=++..+.-.. .+..| -.+.+|-.-|.+.+.+.+|...++...
T Consensus 292 ~~~D~~-----L~~~~---------~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 292 RQWDPR-----LCRLI---------PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred hccChh-----HHHHH---------hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2322 22122 55666777766666665443 44444 566667777888999999999988766
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
+. .|+..+|+-+-++|.+.|+. ++|.+++++-... -.+|+
T Consensus 356 ~~------------------~~s~~~~~~la~~~~~~g~~--~~A~~~r~e~L~~-~~~~~ 395 (400)
T COG3071 356 KL------------------RPSASDYAELADALDQLGEP--EEAEQVRREALLL-TRQPN 395 (400)
T ss_pred hc------------------CCChhhHHHHHHHHHHcCCh--HHHHHHHHHHHHH-hcCCC
Confidence 53 57889999999999999999 9999998876644 34444
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.51 E-value=0.00012 Score=77.68 Aligned_cols=218 Identities=18% Similarity=0.162 Sum_probs=140.6
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
.++...+...+.. ...++.+++-+-+.|.+...+..|..-|..+.+ +|..+--+|-.-|.+.-....=..-..
T Consensus 547 ~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 547 YEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHH
Confidence 3333333334433 334445555566678888888778775554432 344333222221111000000001113
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
.+..++|+.+|....+.. +-|.+.-|.+--.++..|++..|..||.++.+... .+..+|-.+
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----------------~~~dv~lNl 686 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----------------DFEDVWLNL 686 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----------------hCCceeeeH
Confidence 456788999999887753 23777777777788999999999999999998653 134578889
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-CCCCH-HHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-EPCNP-DIAEHAA 396 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-~~~~~-~~~~~~~ 396 (523)
-.+|...|++ ..|+++|+...+.+.-.-+.....+|-+++-+.|.+.+|.+.... +...|..+ ..-|+ ....+.+
T Consensus 687 ah~~~e~~qy--~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 687 AHCYVEQGQY--RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 9999999999 999999999888878777788999999999999999999998655 44444443 22222 2233445
Q ss_pred HHHHhhCC
Q 035847 397 RHLFELEP 404 (523)
Q Consensus 397 ~~l~~~~~ 404 (523)
+.++...+
T Consensus 765 ~s~lr~~k 772 (1018)
T KOG2002|consen 765 ESILRLEK 772 (1018)
T ss_pred HHHHhccc
Confidence 55555443
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=0.00029 Score=69.10 Aligned_cols=362 Identities=13% Similarity=0.097 Sum_probs=203.6
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC-
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK- 64 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~- 64 (523)
+..|..+|++-+.-. ..+...|-.-+..=-+.+.+..|+.+++..+..-...|.+.+ +|++
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 357888888776543 335555666666666788889999999988876655555544 5553
Q ss_pred CC-CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc
Q 035847 65 MP-ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143 (523)
Q Consensus 65 ~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 143 (523)
|. +|+...|++.|+--.+-..++.|.++|++..-. .|++..|--....=.++
T Consensus 168 ~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~---------------------------HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 168 MEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV---------------------------HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---------------------------cccHHHHHHHHHHHHhc
Confidence 22 688888888888888888888888888776532 34444444444444445
Q ss_pred CCHHHHHHHhhhc---------------cccc----cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH
Q 035847 144 GRMEMASGEFEEK---------------DFSN----LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH 204 (523)
Q Consensus 144 g~~~~A~~~f~~~---------------~~~~----~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~ 204 (523)
|.+..|..+|+.| +++. ....+.++-++...+..-.-......|......=-+-|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 5555555554442 1111 12233344444444544111112556666666666667755554
Q ss_pred HHHh--------cCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH-------HHHH
Q 035847 205 CKFS--------KIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT-------ISLS 266 (523)
Q Consensus 205 ~vf~--------~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-------~t~~ 266 (523)
.+.- .+.+. |-.||--.+. .--..|+.+...++|++.... ++|-. +.|.
T Consensus 301 d~Iv~KRk~qYE~~v~~np~nYDsWfdylr------------L~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKNPYNYDSWFDYLR------------LEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHhhhhhhHHHHHHHhCCCCchHHHHHHH------------HHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 4332 22222 3346666666 555779999999999998764 66622 2332
Q ss_pred HHHHHh---hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH----hcCCCchHHHHHHHH
Q 035847 267 GVLAAC---AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG----RCGAIQKNEGWRYFE 339 (523)
Q Consensus 267 ~ll~a~---~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~----~~g~~~~~~a~~~~~ 339 (523)
-+=-+| ....+++.+++++...++ =++. ..+||.-+=-.|+ ++.++ ..|.+++.
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~-lIPH----------------kkFtFaKiWlmyA~feIRq~~l--~~ARkiLG 428 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLD-LIPH----------------KKFTFAKIWLMYAQFEIRQLNL--TGARKILG 428 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc----------------ccchHHHHHHHHHHHHHHHccc--HHHHHHHH
Confidence 222222 235778888888888777 2333 3344444333333 33445 55666555
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
... |..|...+|...|..=.+.+.+|....++++ +.+.|... .-|+.+.++-+++..++...-+.
T Consensus 429 ~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 429 NAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred HHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 443 5566666666666666666666666666665 34555544 44555555444333332211111
Q ss_pred --cceeEEEecCCCCchHHHHH
Q 035847 408 --GKVHSFIAGDTSHSLVHKIS 427 (523)
Q Consensus 408 --~~~~~~~~~~~~~~~~~~~~ 427 (523)
..|.++|.-....+..+.+.
T Consensus 506 pellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHH
Confidence 14445555445555555544
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.50 E-value=2e-05 Score=80.46 Aligned_cols=256 Identities=15% Similarity=0.138 Sum_probs=160.2
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcch-HHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS-WTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
..++..|-..|...|+++.|.+++.+..+.-.. .+ .+..|.+.+ -+.+-..|...+++.+|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k------~~-G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~-- 269 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEK------TS-GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT-- 269 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH------cc-CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 356777889999999999999999988765000 00 011233322 23455677788999999999887654
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+...-...+--..+++.|-..|.+.|++++|...++. |..|.....-. .
T Consensus 270 ----------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~-----------Al~I~~~~~~~--~ 320 (508)
T KOG1840|consen 270 ----------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER-----------ALEIYEKLLGA--S 320 (508)
T ss_pred ----------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-----------HHHHHHHhhcc--C
Confidence 222211010111234566677789999999999999988 44444442211 2
Q ss_pred CCchh-HHHHHHHHHHhcCChHHHHHHHhcCC-------CCCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 181 ESDLL-VNNSLMDFYAKCRYLKVAHCKFSKIK-------QKHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 181 ~~d~~-~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
.|++. .++.+...|+..+.+++|..+++... .++. -+++.|-. .|-+.|++.+|.+
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~------------l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE------------LYLKMGKYKEAEE 388 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH------------HHHHhcchhHHHH
Confidence 33333 45667777888899999988887542 2222 36888888 8889999999999
Q ss_pred HHHHHHhc----CC--CCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 249 FFSRMIQT----DM--QPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 249 lf~~M~~~----g~--~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
+|++..+. +- .+. ...++-|-.+|.+.+..+.|.++|.+
T Consensus 389 ~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~---------------------------------- 434 (508)
T KOG1840|consen 389 LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE---------------------------------- 434 (508)
T ss_pred HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH----------------------------------
Confidence 99987652 11 121 23344455555555555555555422
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..+. +..| -.|+ ..+|..|...|.+.|++++|.++.+..
T Consensus 435 ------------~~~i~----~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 435 ------------AKDIM----KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred ------------HHHHH----HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22222 1112 1233 467888888888888888888876553
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=98.50 E-value=2.2e-05 Score=83.17 Aligned_cols=234 Identities=11% Similarity=-0.021 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcc-hHHHHHHhcc---------CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcch
Q 035847 3 IKNVTLLLQSMDLTNPDECTV-TYALIFQRCP---------KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFS 72 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~ 72 (523)
+++|+.+|++-.+. .|+.. .|..+-.++. ..++++.|...++...+.. ..+...
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--------------P~~~~a 340 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--------------HNNPQA 340 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--------------CCCHHH
Confidence 46788888877654 45443 3433322221 3345788888888887654 236778
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCc-eeHhHHHHHHHh
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNA-CVKRPVLDMFIK 142 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 142 (523)
|..+-..+...|++++|...|++..+.+ +-..+...|+.++|.+.++..++. .|+. ..+..+...+..
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHh
Confidence 8888888889999999999999987765 455566778888888888887765 3432 233344445666
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhH
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSW 218 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~ 218 (523)
.|++++|...+++ ... ...| +...+..+-..|...|+.++|...++++.. |+ ...+
T Consensus 419 ~g~~eeA~~~~~~-------------------~l~-~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~ 478 (553)
T PRK12370 419 HTGIDDAIRLGDE-------------------LRS-QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV 478 (553)
T ss_pred ccCHHHHHHHHHH-------------------HHH-hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence 7888888888777 322 1223 344466667777788888888888877653 22 2334
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+.+-. .|+..| ++|...++.+.+ ....|....+..++.+ -.|+-+.+... ..+.+.
T Consensus 479 ~~l~~------------~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 479 NLLYA------------EYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHH------------HHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHH-HHhhcc
Confidence 44544 555556 467776666654 2233433333333333 23444444443 555543
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00028 Score=69.08 Aligned_cols=181 Identities=13% Similarity=0.177 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
|...+-+-|+-.++.++|...|++..+ .-...|+.|-. -|....+...|++-++....-. +.|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGH------------EyvEmKNt~AAi~sYRrAvdi~-p~Dy 398 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGH------------EYVEMKNTHAAIESYRRAVDIN-PRDY 398 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhH------------HHHHhcccHHHHHHHHHHHhcC-chhH
Confidence 444555667777788888888887654 34457887777 7888888888888888877642 2366
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
..|-.|-++|.-.+...-|.-.++...+. . +.|...|.+|=.+|.+.++. ++|.+.|.+..
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~--k---------------PnDsRlw~aLG~CY~kl~~~--~eAiKCykrai 459 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALEL--K---------------PNDSRLWVALGECYEKLNRL--EEAIKCYKRAI 459 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhc--C---------------CCchHHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 77888888888888887777777777652 1 34788999999999999999 99999999888
Q ss_pred HhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC--------CCCCCC-----------CCCCHHHHHHHHHHHH
Q 035847 343 KEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP--------FEPSSA-----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 343 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~--------~~p~~~-----------~~~~~~~~~~~~~~l~ 400 (523)
.- | ..+...|..|-+++-+.++.++|.+.+++-- ..|... ++++.+.|...+..+.
T Consensus 460 ~~-~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 460 LL-G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred hc-c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 64 3 4467889999999999999999999877631 222222 6667777666555544
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.00022 Score=69.34 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=100.1
Q ss_pred hcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 035847 196 KCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 275 (523)
..|++++|.+.+.+....|...-.+|.. .|- .+-..|++++|++.|-.+..- +.-+.....-+.+-|-..
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn----igl-----t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN----IGL-----TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELL 571 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH----hcc-----cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHh
Confidence 3577777777777666555543333222 111 334556777777777665431 122334444455555555
Q ss_pred CChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHH
Q 035847 276 KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 276 g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~ 337 (523)
.+...|.+++.+... -++.|+.+.+-|-+.| .. +-|+.+..-|-.-|....-+ +++..+
T Consensus 572 ed~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~--ekai~y 648 (840)
T KOG2003|consen 572 EDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS--EKAINY 648 (840)
T ss_pred hCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH--HHHHHH
Confidence 666666665544332 3445566666666666 22 44555655566666666666 888888
Q ss_pred HHHhHHhcCCccCHhHHHHHHHHH-HhhCCHHHHHHHHHhC
Q 035847 338 FEMMKKEYNMEPAMEQYCCMVDLL-ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 338 ~~~m~~~~g~~p~~~ty~~li~~~-~~~g~~~~A~~~~~~m 377 (523)
|+... -++|+..-|..||..| .|.|++.+|+++++..
T Consensus 649 ~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 649 FEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 88664 4688888888887755 4688888888887765
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.41 E-value=0.00015 Score=73.60 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=45.7
Q ss_pred HHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHH
Q 035847 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 11 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 90 (523)
.++...|+..|...|-.=...|-+.|..-.+..+...++.-|+.... --.||+.--..|.+.+.++-|.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed-----------~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED-----------RKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch-----------hHhHHhhhHHHHHhcchHHHHH
Confidence 34556677777777777777777777777777777777766653211 1245555555555555555555
Q ss_pred HHHHHhh
Q 035847 91 NLFYLLI 97 (523)
Q Consensus 91 ~l~~~m~ 97 (523)
.+|....
T Consensus 537 AVya~al 543 (913)
T KOG0495|consen 537 AVYAHAL 543 (913)
T ss_pred HHHHHHH
Confidence 5554443
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.39 E-value=0.0018 Score=68.95 Aligned_cols=336 Identities=13% Similarity=0.103 Sum_probs=179.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeH--
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVK-- 133 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-- 133 (523)
.|.+.-|.|-+-|.-.|+++.+..+...+...- +-+++-..|+++.|...|-...+. .||-+++
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 467777888888888888888888887665433 667777788888888888776654 4554444
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhc
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR----YLKVAHCKFSK 209 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g----~~~~A~~vf~~ 209 (523)
--|..+|.+.|+++.+...|+. +-. ..+-+..+...|-..|+..+ ..+.|..++..
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEk-------------------v~k-~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEK-------------------VLK-QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHH-------------------HHH-hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 4577888899999988888888 333 23334556666666666554 45666666665
Q ss_pred CCCCC---hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH----HhcCCCCCHHHHHHHHHHhhccCChhHHH
Q 035847 210 IKQKH---LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM----IQTDMQPNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 210 m~~~~---~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M----~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
..++. ...|-.+-. . ...+++..++.+|... ...+-.+.....|.+-.-....|.++.|.
T Consensus 406 ~~~~~~~d~~a~l~laq------------l-~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQ------------L-LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHhcccccHHHHHHHHH------------H-HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 55433 333333322 2 2233344444444332 23333355555565555555666666666
Q ss_pred HHHHHHHHh---cCCchHH-------HHhHH--Hhhh-CCCCCcch-------HHHHHHHHHhcC-------CCchHHHH
Q 035847 283 EIHGYVLRH---HIQLSTG-------VGIAL--ISIQ-GLGTGSFV-------WNSLIDMYGRCG-------AIQKNEGW 335 (523)
Q Consensus 283 ~i~~~~~~~---g~~~~~~-------~~~~l--i~~y-~~~p~~~~-------~n~li~~~~~~g-------~~~~~~a~ 335 (523)
..+...... -..+|.. -||.- .... ....-... +-.-|++|.+.| .. .+|.
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~--~ea~ 550 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNL--YEAS 550 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCc--HHHH
Confidence 665555443 1122221 11100 0000 00000000 112344554443 33 5666
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH----HHHhCCCCCCCC----------------------CCCCH
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN----FMKKMPFEPSSA----------------------EPCNP 389 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~----~~~~m~~~p~~~----------------------~~~~~ 389 (523)
..++..... ..-+...++-+-+.+.+...+..|.+ ++.+....+|+. ..+..
T Consensus 551 ~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 551 LLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 666655542 22223333333344555555555554 222222223332 11223
Q ss_pred HHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCC-cCCc
Q 035847 390 DIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGY-MKRI 446 (523)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~-~pd~ 446 (523)
+.|...+.+++..+|.|...-|-.-.-++..|+..++. .+|...++.+- -||.
T Consensus 629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~----dIFsqVrEa~~~~~dv 682 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEAR----DIFSQVREATSDFEDV 682 (1018)
T ss_pred HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHH----HHHHHHHHHHhhCCce
Confidence 34445566677777777665555555566677777764 56666666665 4555
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.38 E-value=0.00032 Score=73.94 Aligned_cols=316 Identities=13% Similarity=0.193 Sum_probs=223.8
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.+++.+..+.. +-+...|-+|-..+-..|+.+++...+- +...+. ..|..-|-.+-.-..+
T Consensus 155 ~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~------------p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLN------------PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcC------------CCChHHHHHHHHHHHh
Confidence 578999999998864 3377889999999999999988766543 333332 3467889999999999
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH----HHHHHHhcCCHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP----VLDMFIKCGRMEMA 149 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A 149 (523)
.|.++.|.-.|.+..+.. -...|-+.|+...|.+-|.++.+..-+.|..-.-. .+..|...++-+.|
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999877654 56677889999999999999987642112222223 34556667777888
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh----------
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----KHL---------- 215 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~~~---------- 215 (523)
.+.++.+ ....+-..+...+|.++..|.+....+.|......+.. +|.
T Consensus 300 ~~~le~~------------------~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 300 AKALEGA------------------LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHH------------------HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 8888871 22113344556778888888888888888776655532 221
Q ss_pred ------------hhHHHHH-HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC--CHHHHHHHHHHhhccCChhH
Q 035847 216 ------------VSWNAML-AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP--NTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 216 ------------~t~~~li-~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~~~g~~~~ 280 (523)
.+|+.=+ .- +-++......+...-+..-..+..+.| +.-.|.-+..++.+.|.+.+
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~rl---------~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~ 432 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVIRL---------MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKE 432 (895)
T ss_pred ccccccccCCCCCCccchhHhH---------hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHH
Confidence 2222111 10 003333333344444444455555434 55678889999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVD 359 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~ 359 (523)
|..++..+..... .-+...|--+-.+|-..|.. ++|.+.|+..... .|+ ...-.+|-.
T Consensus 433 Al~~l~~i~~~~~----------------~~~~~vw~~~a~c~~~l~e~--e~A~e~y~kvl~~---~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 433 ALRLLSPITNREG----------------YQNAFVWYKLARCYMELGEY--EEAIEFYEKVLIL---APDNLDARITLAS 491 (895)
T ss_pred HHHHHHHHhcCcc----------------ccchhhhHHHHHHHHHHhhH--HHHHHHHHHHHhc---CCCchhhhhhHHH
Confidence 9999999987422 12467888899999999999 9999999988754 566 455566777
Q ss_pred HHHhhCCHHHHHHHHHhCCCCCC
Q 035847 360 LLARAGQFDDTLNFMKKMPFEPS 382 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m~~~p~ 382 (523)
.+-+.|+.++|.+.++.|- .||
T Consensus 492 l~~~~g~~EkalEtL~~~~-~~D 513 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQII-NPD 513 (895)
T ss_pred HHHhcCCHHHHHHHHhccc-CCC
Confidence 8889999999999999974 555
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.3e-05 Score=73.04 Aligned_cols=224 Identities=14% Similarity=0.080 Sum_probs=168.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+-+.|-+.|...+|+..+..-++. .|-+.||--|-+.|.+..+.+.|+.+|.+ --. .+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~-------------------gld-~f 286 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGE-------------------GLD-SF 286 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhh-------------------hhh-cC
Confidence 778888999999998888777665 46667788888999999999999999988 222 22
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
.-|+....-+-..+-..++.++|.++++...+ -++.+..++-. +|.-.++++-|++.|+++.+.|
T Consensus 287 P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~------------~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAV------------GYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeee------------ccccCCChHHHHHHHHHHHHhc
Confidence 33444444566677778899999999987654 34555555666 8888999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 035847 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~ 337 (523)
+. +...|+.+--+|.-.+.+|.+..-|......--.|+. -...|-.+=......|+. .-|.+.
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~--------------aaDvWYNlg~vaV~iGD~--nlA~rc 417 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ--------------AADVWYNLGFVAVTIGDF--NLAKRC 417 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch--------------hhhhhhccceeEEeccch--HHHHHH
Confidence 75 6667777766777888899888888877764333332 112355555555677888 889999
Q ss_pred HHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 338 FEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 338 ~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+-.... -.-+.+.|+.|--.-.|.|++++|..+++.-
T Consensus 418 frlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 418 FRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9877653 2334789999998889999999999998874
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=0.0001 Score=71.99 Aligned_cols=193 Identities=11% Similarity=0.158 Sum_probs=150.9
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
.|...+-+-|+-.++.++|...|+. .++ +.| ....|+.+-+-|....+...|..-++.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkR------------------ALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKR------------------ALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHH------------------HHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 4566666777777788888888877 233 344 356788888999999999999999987
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
..+ +|-..|-.|-+ +|.-.+.+.=|+-.|++..+ ++| |+..|.+|-+.|.+.+++++|.+.+
T Consensus 390 Avdi~p~DyRAWYGLGQ------------aYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQ------------AYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHhcCchhHHHHhhhhH------------HHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 654 67889999999 88899999999999999877 566 6789999999999999999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---C-CccC-HhHHHHHHHH
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---N-MEPA-MEQYCCMVDL 360 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~---g-~~p~-~~ty~~li~~ 360 (523)
......|-. +...+..|-+.|-+.++. ++|-.+|+.-.+.. | +.|. ...-.-|-.-
T Consensus 456 krai~~~dt-----------------e~~~l~~LakLye~l~d~--~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~ 516 (559)
T KOG1155|consen 456 KRAILLGDT-----------------EGSALVRLAKLYEELKDL--NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEY 516 (559)
T ss_pred HHHHhcccc-----------------chHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 999886521 336788899999999999 99998887766531 3 3332 2333335566
Q ss_pred HHhhCCHHHHHHHHHhC
Q 035847 361 LARAGQFDDTLNFMKKM 377 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~m 377 (523)
+-+.+++++|.......
T Consensus 517 f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 517 FKKMKDFDEASYYATLV 533 (559)
T ss_pred HHhhcchHHHHHHHHHH
Confidence 78899999999877664
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.32 E-value=2.5e-05 Score=79.72 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=162.4
Q ss_pred chhHHHHHHHHhhhC---CCCCCcchHH----HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHH
Q 035847 2 VIKNVTLLLQSMDLT---NPDECTVTYA----LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~---g~~p~~~t~~----~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~ 74 (523)
++++|..++.+-.+. +.-.+..... .+-..+...+.+++|..+++.+..-- ..+|..+...-..+++
T Consensus 214 ~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~------e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR------EEVFGEDHPAVAATLN 287 (508)
T ss_pred cHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH------HHhcCCCCHHHHHHHH
Confidence 356677776664432 1112222233 34456677889999999999887421 1123333333457888
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcC-CCCce-eHhHHHHHHHhcCCHHHHHHH
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKF-EGNAC-VKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~ 152 (523)
.|-..|.+.|++++|...+++ |.+|+.. ..|. .|++. .++.+...|+..++++.|..+
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~------------------Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCER------------------ALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhccCChHHHHHHHHH------------------HHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 888999999999999999866 3445554 1221 23322 456777888889999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C---C-hhhHHHH
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------K---H-LVSWNAM 221 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~---~-~~t~~~l 221 (523)
+.. +..++...+.. ...--..+++.|-..|-+.|++++|+++|....+ . . -.+.|-|
T Consensus 348 ~q~-----------al~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 348 LQK-----------ALKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHH-----------HHHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 987 34444433322 1112356899999999999999999999987642 1 1 2356667
Q ss_pred HHhhhhcCCccccchhhccCCchHHHHHHHHHHh----cCC-CCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----TDM-QPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 222 i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
-. .|.+.++..+|.++|.+-.. .|. .|+ ..||..|...|.+.|+++.|.++.+.+..
T Consensus 416 a~------------~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 416 AE------------AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HH------------HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67 88899999999999987543 232 233 37788999999999999999999888764
No 63
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=7.8e-07 Score=55.60 Aligned_cols=35 Identities=31% Similarity=0.713 Sum_probs=33.1
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
++||+||. +|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~------------~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLID------------GLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHH------------HHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999 999999999999999999999999984
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.00013 Score=71.31 Aligned_cols=220 Identities=13% Similarity=0.153 Sum_probs=150.2
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc----------------cccccCchhhHhhHh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK----------------DFSNLSLLKHGKEIH 171 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~----------------~~~~~~~~~~~~~~~ 171 (523)
.++++.|+.+|++.+... ..+...|---+.+=.|+..+..|..+|+.| .--.+|++..++|++
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456777888888887654 456667777788888899999999999885 233457788888888
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
..-|. .+||...|++.|+.=.+-..++.|+.++++.. .|++.+|---.. -=.++|....|..+
T Consensus 165 erW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyar------------FE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 165 ERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYAR------------FEEKHGNVALARSV 229 (677)
T ss_pred HHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHH------------HHHhcCcHHHHHHH
Confidence 88774 58999999999999999999999999999854 699999877766 66688999888888
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhh----ccCChhHHHHHHHHHHHhcCCc-hHHHHhHHHhh---h--------------
Q 035847 250 FSRMIQTDMQPNTISLSGVLAACA----QVKGFKLGKEIHGYVLRHHIQL-STGVGIALISI---Q-------------- 307 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll~a~~----~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~---y-------------- 307 (523)
|...... -.|...-..+..|++ +....+.|.-++...+++--.. ....|..++.. |
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 8876652 123333334444444 4566788888888777642211 12333332221 1
Q ss_pred -----C-C---CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 308 -----G-L---GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 308 -----~-~---~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
+ + +-|--+|=-.+..--..|+. +...++|++... ++.|
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~--~~Ire~yErAIa--nvpp 354 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDK--DRIRETYERAIA--NVPP 354 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCH--HHHHHHHHHHHc--cCCc
Confidence 1 1 23444555555555566777 666666666654 4444
No 65
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.25 E-value=1.2e-06 Score=54.76 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
++||+||.+|++.|++ ++|.++|++|.+. |+.||.
T Consensus 1 ~~~n~li~~~~~~~~~--~~a~~~~~~M~~~-g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRV--EEALELFKEMLER-GIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCH--HHHHHHHHHHHHc-CCCCCC
Confidence 4899999999999999 9999999999987 999984
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.19 E-value=0.00039 Score=67.45 Aligned_cols=189 Identities=15% Similarity=0.072 Sum_probs=128.5
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
..|..+-..|.+.|+.+.|...|++ ... ..| +...|+.+-..|...|++++|...|+.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~-------------------Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 123 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQ-------------------ALA--LRPDMADAYNYLGIYLTQAGNFDAAYEAFDS 123 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHH--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3466777788899999999999988 222 234 577899999999999999999999988
Q ss_pred CCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHH
Q 035847 210 IKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 210 m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
..+ | +..+|..+-. .+...|++++|++.|+...+. .|+..........+...++.++|...+.
T Consensus 124 Al~l~P~~~~a~~~lg~------------~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 124 VLELDPTYNYAYLNRGI------------ALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHhCCCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 753 4 3467777777 778899999999999998874 4544322222222345678899998886
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-----CHhHHHHHHHHH
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-----AMEQYCCMVDLL 361 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-----~~~ty~~li~~~ 361 (523)
...... .|+. |.. -..+...|+. .++ ..|..+.+.....| ....|..+-..+
T Consensus 190 ~~~~~~-----------------~~~~--~~~-~~~~~~lg~~--~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~ 246 (296)
T PRK11189 190 QRYEKL-----------------DKEQ--WGW-NIVEFYLGKI--SEE-TLMERLKAGATDNTELAERLCETYFYLAKYY 246 (296)
T ss_pred HHHhhC-----------------Cccc--cHH-HHHHHHccCC--CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 655321 1222 221 1222335666 444 35556554222222 235788899999
Q ss_pred HhhCCHHHHHHHHHhC
Q 035847 362 ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m 377 (523)
.+.|++++|...+++-
T Consensus 247 ~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 247 LSLGDLDEAAALFKLA 262 (296)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999999874
No 67
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.17 E-value=2.3e-06 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=32.3
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
+.|||++|. +|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~------------a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLR------------ACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 469999999 9999999999999999999999998
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.14 E-value=0.00066 Score=65.92 Aligned_cols=185 Identities=9% Similarity=0.000 Sum_probs=114.3
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVLDMF 140 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 140 (523)
..|..+-..|.+.|+.++|...|++..+.. +-..+...|+++.|.+.++..++. .| +..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 445555556666677777777776665543 444555666777777777766654 45 456778888888
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhhHH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWN 219 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~~t~~ 219 (523)
...|++++|.+.|++ .-. ..|+..........+...++.++|...|..... -+...|.
T Consensus 143 ~~~g~~~eA~~~~~~-------------------al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~ 201 (296)
T PRK11189 143 YYGGRYELAQDDLLA-------------------FYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG 201 (296)
T ss_pred HHCCCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH
Confidence 899999999999988 222 234332222223334456789999999965332 1222232
Q ss_pred HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc---CC--CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT---DM--QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 220 ~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~---g~--~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.-+ .....|+..++ +.|..+.+. .+ .| ...+|..+-..+.+.|+.++|...|+...+..
T Consensus 202 ~~~-------------~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 202 WNI-------------VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHH-------------HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 212 22235555554 355555432 11 12 23567788888899999999999999998754
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.13 E-value=0.0013 Score=68.09 Aligned_cols=260 Identities=15% Similarity=0.163 Sum_probs=176.7
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCcee-HhHHHHHHHhc----
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACV-KRPVLDMFIKC---- 143 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~---- 143 (523)
..+...|++++|++.+..-...- ..+.+.+.|+.++|..++..+++.+ ||-.. |..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 34577899999999986643322 5566778999999999999999885 55554 44555554222
Q ss_pred -CCHHHHHHHhhhc---------------cccccCch-hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 144 -GRMEMASGEFEEK---------------DFSNLSLL-KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 144 -g~~~~A~~~f~~~---------------~~~~~~~~-~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
.+.+....+|++. .+.....+ ..+.......++. |+++ +++.|-..|....+.+-...+
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K-gvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK-GVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc-CCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2567777787772 11111111 1223333344444 6544 677888888766665555555
Q ss_pred HhcCC------------------CCChhhHH--HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHH
Q 035847 207 FSKIK------------------QKHLVSWN--AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISL 265 (523)
Q Consensus 207 f~~m~------------------~~~~~t~~--~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~ 265 (523)
+.... .|....|. -+-. .|-..|++++|+++.++-.+. .|+ ...|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAq------------hyd~~g~~~~Al~~Id~aI~h--tPt~~ely 231 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQ------------HYDYLGDYEKALEYIDKAIEH--TPTLVELY 231 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 55431 13333454 4445 677899999999999988874 566 4567
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..--..+-+.|++++|.+..+...+.. .-|...=+-.+..+.++|++ ++|.+++....+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD-----------------~~DRyiNsK~aKy~LRa~~~--e~A~~~~~~Ftr~- 291 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELD-----------------LADRYINSKCAKYLLRAGRI--EEAEKTASLFTRE- 291 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCC-----------------hhhHHHHHHHHHHHHHCCCH--HHHHHHHHhhcCC-
Confidence 777778899999999999999988743 23666777788899999999 9999999988876
Q ss_pred CCccCHhHH--------HHHHHHHHhhCCHHHHHHHHHhC
Q 035847 346 NMEPAMEQY--------CCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 346 g~~p~~~ty--------~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..|-...+ .-.-.+|.|.|++..|++.+...
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554443222 33456888999999998876553
No 70
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.13 E-value=6.1e-05 Score=72.38 Aligned_cols=155 Identities=13% Similarity=0.137 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL- 215 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~- 215 (523)
-.+|...|++++|++++.+ + .+.......+..|.+.++++.|.+.++.|++-|.
T Consensus 109 A~i~~~~~~~~~AL~~l~~-----------------------~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHK-----------------------G--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTT-----------------------T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCCHHHHHHHHHc-----------------------c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3566778999999999877 4 3456667788999999999999999999986322
Q ss_pred hhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
.+-.-+..+|. .+... +.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++....+..
T Consensus 164 ~~l~qLa~awv---------~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-- 231 (290)
T PF04733_consen 164 SILTQLAEAWV---------NLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-- 231 (290)
T ss_dssp HHHHHHHHHHH---------HHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---
T ss_pred HHHHHHHHHHH---------HHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--
Confidence 33334445443 33333 4689999999998664 67888899999889999999999999887765421
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
| .|..+.-.+|......|+.. +.+.+++..++..
T Consensus 232 ~---------------~~~d~LaNliv~~~~~gk~~-~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 P---------------NDPDTLANLIVCSLHLGKPT-EAAERYLSQLKQS 265 (290)
T ss_dssp C---------------CHHHHHHHHHHHHHHTT-TC-HHHHHHHHHCHHH
T ss_pred c---------------CCHHHHHHHHHHHHHhCCCh-hHHHHHHHHHHHh
Confidence 1 13334555677767767652 4566788888765
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.001 Score=65.60 Aligned_cols=191 Identities=19% Similarity=0.130 Sum_probs=140.6
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC-CchHHHHhHHHh----hh---
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI-QLSTGVGIALIS----IQ--- 307 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~-~~~~~~~~~li~----~y--- 307 (523)
-+.-.|+.-.|.+-|+......-.++.. |.-+-.+|....+.++..+.|....+..- .||++.-+.-|. -|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 3445788889999999988765444442 66666689999999999999999988543 455554444333 33
Q ss_pred --------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh-C
Q 035847 308 --------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK-M 377 (523)
Q Consensus 308 --------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~-m 377 (523)
.+ +-++..|-.+--+.-+.+++ ++++..|++.+++ +.-..+.|+-.-..+...+++++|.+.++. |
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~--~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKI--AESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 45 44666777777777788899 9999999999986 344478899899999999999999999987 5
Q ss_pred CCCCCCC------------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 378 PFEPSSA------------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 378 ~~~p~~~------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
.++|+.. -.+++..|....++.++++|+....+-.+..-....+.++++.+.++
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6777722 34788899999999999999876555444444455667777764443
No 72
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=5e-06 Score=51.58 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP 349 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p 349 (523)
+.+||++|.+|++.|++ +.|.++|+.|++. |++|
T Consensus 1 v~ty~~ll~a~~~~g~~--~~a~~~~~~M~~~-gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDP--DAALQLFDEMKEQ-GVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCH--HHHHHHHHHHHHh-CCCC
Confidence 46899999999999999 9999999999987 9988
No 73
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.05 E-value=0.0024 Score=65.10 Aligned_cols=307 Identities=12% Similarity=0.166 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhc------CCCCceeHhHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIK------FEGNACVKRPV 136 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~l 136 (523)
-...|...|.-.-+.+-++-++++|++..+-. -|..++..+++++|.+.+..++... .+.+-..|+-+
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 34678888888888888999999998876654 7788888888888888877765321 12334455555
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL--ESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
-+..++.-+.-.-+.+= .+++. |+ -+| ...|++|.+-|.+.|.++.|..+|++-.+
T Consensus 217 cdlis~~p~~~~slnvd-------------------aiiR~-gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVD-------------------AIIRG-GIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHhCcchhcccCHH-------------------HHHHh-hcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55444443222111110 11332 43 344 45899999999999999999999987433
Q ss_pred --CChhhHHHHHHhhhhcCCccc---cc-hhhccCC------chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 213 --KHLVSWNAMLAGYALGGFREE---IT-GFTQYGD------GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 213 --~~~~t~~~li~~~~~~g~~~~---i~-~~~~~g~------~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
-.+.-++.+..+|++.-..-. +. +-.+.|+ ++-.+.-|+.+...+ | ...|++ +.+ .+...
T Consensus 277 ~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr--~--~~lNsV---lLR-Qn~~n 348 (835)
T KOG2047|consen 277 TVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR--P--LLLNSV---LLR-QNPHN 348 (835)
T ss_pred hheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc--c--hHHHHH---HHh-cCCcc
Confidence 233345555553321100000 00 0001111 111222233322211 0 000110 111 11111
Q ss_pred HHHHHHHHHHh-c-CCchHHHHhHHHhhhC--C--CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC---H
Q 035847 281 GKEIHGYVLRH-H-IQLSTGVGIALISIQG--L--GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA---M 351 (523)
Q Consensus 281 a~~i~~~~~~~-g-~~~~~~~~~~li~~y~--~--~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~---~ 351 (523)
..+-+....-. | ..--+.+|+-.|..-+ . ..-...|..+-+-|-.+|++ +.|..+|+...+. ..+-- .
T Consensus 349 V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l--~~aRvifeka~~V-~y~~v~dLa 425 (835)
T KOG2047|consen 349 VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL--DDARVIFEKATKV-PYKTVEDLA 425 (835)
T ss_pred HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH--HHHHHHHHHhhcC-CccchHHHH
Confidence 22222221110 0 1111223333332211 1 12234689999999999999 9999999988764 22111 3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC------------------------------CCCCHHHHHHHHHHHHh
Q 035847 352 EQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA------------------------------EPCNPDIAEHAARHLFE 401 (523)
Q Consensus 352 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~------------------------------~~~~~~~~~~~~~~l~~ 401 (523)
.+|..-..+=.+..+++.|+++++.-..-|... ..|.++.-..+.+++++
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666667778999999999998854333331 46666666677777777
Q ss_pred hCCCC
Q 035847 402 LEPLS 406 (523)
Q Consensus 402 ~~~~~ 406 (523)
+.-..
T Consensus 506 LriaT 510 (835)
T KOG2047|consen 506 LRIAT 510 (835)
T ss_pred HhcCC
Confidence 65433
No 74
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.0011 Score=64.66 Aligned_cols=202 Identities=11% Similarity=0.100 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
|+++.|.+.+.+.+...-.-....||.=+ .+-+.|++++|+..|-+ +|.... -++.+.-
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~k--------------lh~il~------nn~evl~ 562 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLK--------------LHAILL------NNAEVLV 562 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHH--------------HHHHHH------hhHHHHH
Confidence 45555555555544332111222233211 34566777777777766 343322 2344555
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
-+.+.|--..+...|.+++-+... | |....+-|-. .|-+.|+-..|++.+-+--. -++-|..|.
T Consensus 563 qianiye~led~aqaie~~~q~~slip~dp~ilskl~d------------lydqegdksqafq~~ydsyr-yfp~nie~i 629 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD------------LYDQEGDKSQAFQCHYDSYR-YFPCNIETI 629 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH------------Hhhcccchhhhhhhhhhccc-ccCcchHHH
Confidence 566666666667777766655432 2 4445555555 66667777777665543322 244455666
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH-HhcCCCchHHHHHHHHHhHHh
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY-GRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~-~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.-|-.-|....-.+++.+.|+...- ++|+.+-|-.||..| .+.|.. .+|+++++....+
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaal------------------iqp~~~kwqlmiasc~rrsgny--qka~d~yk~~hrk 689 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAAL------------------IQPNQSKWQLMIASCFRRSGNY--QKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh------------------cCccHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHh
Confidence 6666666666666777777665532 367777777776544 466888 8888888888764
Q ss_pred cCCccCHhHHHHHHHHHHhhCC
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQ 366 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~ 366 (523)
+.-|.....-|++.++..|.
T Consensus 690 --fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 --FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred --CccchHHHHHHHHHhccccc
Confidence 56677888888888887774
No 75
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.00 E-value=6.3e-06 Score=49.85 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=28.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999999876
No 76
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.99 E-value=0.011 Score=60.50 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=131.5
Q ss_pred CCCc--chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcC------------CC------------------
Q 035847 19 DECT--VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEK------------MP------------------ 66 (523)
Q Consensus 19 ~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~------------~~------------------ 66 (523)
-||. ..|.+|.+-|.++|.++.|..++++-.+.-+....|..+|+. |.
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 3454 468899999999999999999999887665433333331110 00
Q ss_pred -----------------------CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc-------c--------HHHHhhcc
Q 035847 67 -----------------------ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-------G--------VYKACSEL 108 (523)
Q Consensus 67 -----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g--------ll~~~~~~ 108 (523)
..|+.+|..-+.. ..|+..+-+..|.+..+. | +-+.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 1133334333322 234455555555544332 1 55566667
Q ss_pred CChHHHHHHHHHHHHhcCCCC---ceeHhHHHHHHHhcCCHHHHHHHhhhccccccC----chhhHhhHhhhhhhcCCCC
Q 035847 109 KDHRVGKDVYDYMISIKFEGN---ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS----LLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ 181 (523)
|+++.|+.+|+...+..++-- ..+|-..-.+=.+..+++.|+++.+.|.+.-.. .++.+..+... +.
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r------lh 474 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR------LH 474 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH------HH
Confidence 777777777777765443221 234555555556666777777777773222111 11222211111 11
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+..+|...++.--..|-++....+++.+.+ |.++ .|..++. .+.-+++++++|++=..
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE---------------eh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE---------------EHKYFEESFKAYERGIS 539 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hhHHHHHHHHHHHcCCc
Confidence 2345566666666667777777777777654 3222 2333333 34445666666654322
Q ss_pred cCCCCCH-HHHHHHHHHhh---ccCChhHHHHHHHHHHHhcCCc
Q 035847 256 TDMQPNT-ISLSGVLAACA---QVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 256 ~g~~p~~-~t~~~ll~a~~---~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
-=--|+. ..|++-|.-+. ....++.|+.+|++.++ |.+|
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2112332 22333222222 12356667777776666 4433
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0016 Score=65.41 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=148.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++.+++++...+. .+++...+..-|.++...|+...-.-+=..+++.- ....++|=++---|.-
T Consensus 260 f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--------------P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 260 FKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--------------PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--------------CCCCcchhhHHHHHHH
Confidence 45666666666553 34455555566666777776655555444444432 1234555555555555
Q ss_pred cCCchHHHHHHHHhhHcc-------------------------------------------HHHHhhccCChHHHHHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG-------------------------------------------VYKACSELKDHRVGKDVYD 119 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g-------------------------------------------ll~~~~~~~~~~~a~~~~~ 119 (523)
-|+..+|.+.|.+--..+ +---|.+.+.++.|.+.|.
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 555556655554432211 3333556777888888887
Q ss_pred HHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC--CchhHHHHHHHHHHhc
Q 035847 120 YMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE--SDLLVNNSLMDFYAKC 197 (523)
Q Consensus 120 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~d~~~~~~li~~~~k~ 197 (523)
...... +.|+.+.+-+--+..+.+.+.+|...|..+. ...+..+-+ .-..+++.|-+.|-|+
T Consensus 405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l---------------~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL---------------EVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH---------------HHhhhccccccchhHHHHhHHHHHHHH
Confidence 776552 4577788888777778888888888888710 011111111 2344688889999999
Q ss_pred CChHHHHHHHhcC---CCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 198 RYLKVAHCKFSKI---KQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 198 g~~~~A~~vf~~m---~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
+..++|...|+.- ...|..++.++-- .|...|+++.|.+.|++-.. ++||..+-+.+|.-+.
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~------------iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGY------------IYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHH------------HHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999999864 4578889999877 77889999999999998764 7899988888877543
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00022 Score=66.70 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=164.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
|...|-..-+-|-..|.+.|.+.+|++.|+.-. .|-+.||-.|-. .|.+-.++..|+.+|.+-..
T Consensus 218 ~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLsk------------vY~ridQP~~AL~~~~~gld- 284 (478)
T KOG1129|consen 218 GCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSK------------VYQRIDQPERALLVIGEGLD- 284 (478)
T ss_pred cchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHH------------HHHHhccHHHHHHHHhhhhh-
Confidence 334455555788899999999999999998754 377788888888 99999999999999998776
Q ss_pred CCCCCHHHHHH-HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHH
Q 035847 257 DMQPNTISLSG-VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 257 g~~p~~~t~~~-ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~ 335 (523)
..|-.+||.. +-..+-..+..+.+.+++....+.. .-|+...-.+-.+|.-.+++ +-|+
T Consensus 285 -~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-----------------~~nvEaiAcia~~yfY~~~P--E~Al 344 (478)
T KOG1129|consen 285 -SFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-----------------PINVEAIACIAVGYFYDNNP--EMAL 344 (478)
T ss_pred -cCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-----------------CccceeeeeeeeccccCCCh--HHHH
Confidence 4577777653 4455666788999999999988742 22455555666778888999 9999
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC---CCCCCC------------CCCCHHHHHHHHHHHH
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP---FEPSSA------------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~------------~~~~~~~~~~~~~~l~ 400 (523)
+++++.... |+. +.+.|+.+--.|.-.+++|-++.-|++-- -.|+.. .-||+.+|.+.++..+
T Consensus 345 ryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 345 RYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 999999987 854 66788887777778888888888777631 122222 6799999999999988
Q ss_pred hhCCCCCcceeEEEecCCCCchHHHHHHH
Q 035847 401 ELEPLSSGKVHSFIAGDTSHSLVHKISEK 429 (523)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (523)
..+|.++..++.+..-..+.|.++++.+.
T Consensus 423 ~~d~~h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred ccCcchHHHHHhHHHHHhhcCchHHHHHH
Confidence 88888887777766555667777776433
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.96 E-value=0.0078 Score=60.06 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--- 212 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--- 212 (523)
+-..+...|++++|...+++ .-. .-+.+...+..+-..|...|++++|...++...+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~-------------------al~-~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARR-------------------ALE-LNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHH-------------------HHh-hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 33455666666666666666 222 1122345566666666667777777777665442
Q ss_pred --CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 213 --KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 213 --~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
++. ..|..+.. .+...|++++|+.+|++...
T Consensus 180 ~~~~~~~~~~~~la~------------~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 180 CSSMLRGHNWWHLAL------------FYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCcchhHHHHHHHHH------------HHHHCCCHHHHHHHHHHHhc
Confidence 121 12334445 66666777777777766643
No 80
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.93 E-value=8.9e-06 Score=49.18 Aligned_cols=31 Identities=32% Similarity=0.677 Sum_probs=29.2
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
+|||+||+ +|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~------------~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLIS------------GYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHH------------HHHccchHHHHHHHHHHHhHCcC
Confidence 58999999 99999999999999999999875
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.93 E-value=0.00014 Score=79.59 Aligned_cols=196 Identities=12% Similarity=0.143 Sum_probs=158.3
Q ss_pred CCCh-hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--H---HHHHHHHHHhhccCChhHHHHHH
Q 035847 212 QKHL-VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--T---ISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 212 ~~~~-~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--~---~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
.||. +.|-..|. ...+.++.++|.+++++.... |.|. . -.|.++++.--.-|.-+...++|
T Consensus 1454 sPNSSi~WI~YMa------------f~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMA------------FHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CCCcchHHHHHHH------------HHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 3654 57888888 888999999999999998763 3221 1 23555555444456777888889
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
+++.+.-- .-..|..|..-|.+.+.. ++|-++|+.|.+.+| -....|....+.+.+..
T Consensus 1521 eRAcqycd------------------~~~V~~~L~~iy~k~ek~--~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~n 1578 (1710)
T KOG1070|consen 1521 ERACQYCD------------------AYTVHLKLLGIYEKSEKN--DEADELLRLMLKKFG--QTRKVWIMYADFLLRQN 1578 (1710)
T ss_pred HHHHHhcc------------------hHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHhc--chhhHHHHHHHHHhccc
Confidence 88877421 124688899999999999 999999999999877 55678999999999999
Q ss_pred CHHHHHHHHHh-CCCCCCCC-------------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 366 QFDDTLNFMKK-MPFEPSSA-------------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 366 ~~~~A~~~~~~-m~~~p~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
+-+.|..++.+ |..-|..- ++|+.++|+.+++-++.-.|+....|+.++....+|+..+.+ .
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v----R 1654 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV----R 1654 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH----H
Confidence 99999999877 56666622 899999999999999999999999999999999999988775 6
Q ss_pred HHHHHHHHcCCcCCc
Q 035847 432 RLYSEIKKIGYMKRI 446 (523)
Q Consensus 432 ~l~~~m~~~g~~pd~ 446 (523)
.||++....++.|-.
T Consensus 1655 ~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHhcCCChhH
Confidence 899999999998765
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.023 Score=55.32 Aligned_cols=233 Identities=11% Similarity=0.035 Sum_probs=144.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh----hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV----SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~----t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.+.-|+....++-+.|...|+.++|...|+.... |+.+ .|..|+. +.|+.++...+-..
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~---------------~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLG---------------QEGGCEQDSALMDY 291 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHH---------------hccCHhhHHHHHHH
Confidence 5777899999999999999999999999998664 4443 3555555 77888888877777
Q ss_pred HHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 253 MIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 253 M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
+.... +-+..-|-.-........+.+.|..+-+..++.. +.++..|-.-=..+...|+. +
T Consensus 292 Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----------------~r~~~alilKG~lL~~~~R~--~ 351 (564)
T KOG1174|consen 292 LFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-----------------PRNHEALILKGRLLIALERH--T 351 (564)
T ss_pred HHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------------cccchHHHhccHHHHhccch--H
Confidence 76531 1122222222222334566666666655554421 11222221112345677888 9
Q ss_pred HHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHH----HhCCCCCCCC----------CCCCHHHHHHHHH
Q 035847 333 EGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFM----KKMPFEPSSA----------EPCNPDIAEHAAR 397 (523)
Q Consensus 333 ~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~----~~m~~~p~~~----------~~~~~~~~~~~~~ 397 (523)
+|.-.|+..+ .+.|. ..+|.-|+..|...|++.||.-+- +.|+-...+. ....-|.|.+.++
T Consensus 352 ~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 352 QAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999886 45655 799999999999999999987764 4454221111 2334577888888
Q ss_pred HHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCCchhhhhhHHH
Q 035847 398 HLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKL 455 (523)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~l 455 (523)
+.+.++|.-...++....-....|..+++.+.|++ ..-..||.++..|-+.+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~------~L~~~~D~~LH~~Lgd~ 480 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK------HLIIFPDVNLHNHLGDI 480 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH------HHhhccccHHHHHHHHH
Confidence 88888887655444333333345555555544432 12234666555554443
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.91 E-value=0.013 Score=60.10 Aligned_cols=307 Identities=13% Similarity=0.132 Sum_probs=157.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKA 104 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~ 104 (523)
..|+.++|......-.+. | ..+-++|..+--.+-...++++|+..|......+ +--.
T Consensus 53 ~lg~~~ea~~~vr~glr~----d----------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRN----D----------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhcc----C----------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455666666554433332 2 3567888877666666678888998887766554 1111
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc--cc----------------------cc
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DF----------------------SN 160 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~----------------------~~ 160 (523)
-++.++++..........+.. ......|..+..++--.|+...|..+.++- .+ ..
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E 197 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE 197 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 123344444433333333321 112233444444444445555554444431 00 00
Q ss_pred cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhh
Q 035847 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
.+.++.+.+.... -+. .+.-....--+--+.+.+.+++++|..++..+.. ||-+-|+-.+.. ++.
T Consensus 198 ~g~~q~ale~L~~-~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~-----------~lg 264 (700)
T KOG1156|consen 198 AGSLQKALEHLLD-NEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEK-----------ALG 264 (700)
T ss_pred cccHHHHHHHHHh-hhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHH-----------HHH
Confidence 0111111110000 111 1111122233445667778888888888887754 555555554441 222
Q ss_pred ccCCchHHH-HHHHHHHhc---CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh-------------
Q 035847 239 QYGDGETAL-EFFSRMIQT---DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------------- 301 (523)
Q Consensus 239 ~~g~~~~A~-~lf~~M~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~------------- 301 (523)
+--+.-+++ .+|....+. .-.|-....+.+ -...-.+...+++..+.+.|+++-.....
T Consensus 265 k~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl----~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le 340 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEKYPRHECPRRLPLSVL----NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLE 340 (700)
T ss_pred HHhhhHHHHHHHHHHHhhcCcccccchhccHHHh----CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHH
Confidence 222233333 445444332 111211111111 11222334444455555666554222222
Q ss_pred HHHhhh----------------CC-CCCcchHHH--HHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHH
Q 035847 302 ALISIQ----------------GL-GTGSFVWNS--LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLL 361 (523)
Q Consensus 302 ~li~~y----------------~~-~p~~~~~n~--li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~ 361 (523)
-++..| .. .|....|+. ++..|-+.|++ +.|..+.+... +-.|+ .+-|-.=.+.+
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~--~~A~~yId~AI---dHTPTliEly~~KaRI~ 415 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDY--EVALEYIDLAI---DHTPTLIELYLVKARIF 415 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccH--HHHHHHHHHHh---ccCchHHHHHHHHHHHH
Confidence 223333 22 566666765 77888899999 99999999876 44787 46777777888
Q ss_pred HhhCCHHHHHHHHHhC
Q 035847 362 ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m 377 (523)
..+|++++|..++++-
T Consensus 416 kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 416 KHAGLLDEAAAWLDEA 431 (700)
T ss_pred HhcCChHHHHHHHHHH
Confidence 9999999999999885
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.011 Score=59.82 Aligned_cols=109 Identities=11% Similarity=0.020 Sum_probs=77.0
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH--cc----H
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID--EG----V 101 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g----l 101 (523)
=++-+...+++++|.+....+...+. -|...+.+=+-++++.+++++|+.+.+.-.. .+ +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~p--------------dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~f 83 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVP--------------DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFF 83 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCC--------------CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhH
Confidence 34556678889999999888887652 2555666667788999999999977765432 11 3
Q ss_pred HHHhh--ccCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACS--ELKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
=++|| +.+..++|...+. |..++.. +...=-..+-+.|++++|+.+|+.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45665 6778888887777 4555443 444445567788999999999988
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.003 Score=59.97 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=105.8
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh-hc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC-AQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ- 307 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y- 307 (523)
|--|.+.+++.+|..+.+++.- ..|-.+..-.+..+- .+ ...+.-|.+.|...-.++..-|..-..--+..|
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 5567788899999988877642 345555444444332 21 224567777787776666655443332222222
Q ss_pred -----------------CC--CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHH-HHHHhhCCH
Q 035847 308 -----------------GL--GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV-DLLARAGQF 367 (523)
Q Consensus 308 -----------------~~--~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li-~~~~~~g~~ 367 (523)
.. ..|.+.|| +..+++..|.. .+|.++|-..... .+ -|..+|.+++ +.|.+.++.
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny--~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY--VEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh--HHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCc
Confidence 11 34444444 67888999999 9999999877543 22 4566776654 588999999
Q ss_pred HHHHHHHHhCCCCCCCC-----------CCCCHHHHHHHHHHHHhhCCC
Q 035847 368 DDTLNFMKKMPFEPSSA-----------EPCNPDIAEHAARHLFELEPL 405 (523)
Q Consensus 368 ~~A~~~~~~m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~ 405 (523)
+-|++++-++.-..+.. +.+.+-.+.+++..+-.++|.
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 99999998885433332 555566667777777777765
No 86
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.80 E-value=0.0018 Score=67.02 Aligned_cols=225 Identities=16% Similarity=0.185 Sum_probs=144.9
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
..+...|++++|+..+++ -.. -+.....+....-..|.+.|+.++|..++..+.+ |+-
T Consensus 12 ~il~e~g~~~~AL~~L~~-------------------~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn 71 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEK-------------------NEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN 71 (517)
T ss_pred HHHHHCCCHHHHHHHHHh-------------------hhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 456788999999999987 444 3444466777888999999999999999999875 655
Q ss_pred hhHHHHHHhhhhcCCccccchhh-----ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh-hHHHHHHHHHH
Q 035847 216 VSWNAMLAGYALGGFREEITGFT-----QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-KLGKEIHGYVL 289 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~-----~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~ 289 (523)
..|-..+.. +.. .....+...++|+++...- |.......+.-.+.....+ ..+.+.+..+.
T Consensus 72 ~~Yy~~L~~-----------~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 72 YDYYRGLEE-----------ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHHHHHHHH-----------HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHH
Confidence 555444441 221 1234677788888886643 4333333332222221222 34445566666
Q ss_pred HhcCCchHHHHhH-------------HHhhh-------------C---C-CCCcchH--HHHHHHHHhcCCCchHHHHHH
Q 035847 290 RHHIQLSTGVGIA-------------LISIQ-------------G---L-GTGSFVW--NSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 290 ~~g~~~~~~~~~~-------------li~~y-------------~---~-~p~~~~~--n~li~~~~~~g~~~~~~a~~~ 337 (523)
+.|+++-.....+ ++..| + . .|....| .-+-..|-..|+. ++|+++
T Consensus 139 ~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~--~~Al~~ 216 (517)
T PF12569_consen 139 RKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY--EKALEY 216 (517)
T ss_pred hcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH--HHHHHH
Confidence 6776553322222 22222 1 1 3444445 4556778889999 999999
Q ss_pred HHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHH
Q 035847 338 FEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLF 400 (523)
Q Consensus 338 ~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~ 400 (523)
.+...+. +|+ +..|..-.+.|-+.|++++|.+.++.-. +.+... ..|..+.|+..+....
T Consensus 217 Id~aI~h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 217 IDKAIEH---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHhc---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 9988764 677 6888888999999999999999988753 232222 6778888866655443
No 87
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.79 E-value=0.00053 Score=61.04 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHhhc-----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh--CC-CCCcchHHHHHHHHHhcCCC
Q 035847 258 MQPNTISLSGVLAACAQ-----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--GL-GTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--~~-~p~~~~~n~li~~~~~~g~~ 329 (523)
-..|..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+ |. .|... +-++---|-+..
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~-fQ~~F~hyp~Qq-- 119 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNF-FQAEFMHYPRQQ-- 119 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccH-HHHHhccCcHHH--
Confidence 45688899999988865 477888888899999999999999999999987 33 33322 222322333333
Q ss_pred chHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH-HHHHHHHHhCC----CCCCCC----CCCCHHHHHHHHHHHH
Q 035847 330 QKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF-DDTLNFMKKMP----FEPSSA----EPCNPDIAEHAARHLF 400 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~~~~~m~----~~p~~~----~~~~~~~~~~~~~~l~ 400 (523)
+-|++++++|... |+.||.+|+..+++.+++.+.. .+..+++-=|+ ..|-.. -...+++|..+.+++-
T Consensus 120 --~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~plp~~lP~Dp~eLA~lal~rm~ 196 (228)
T PF06239_consen 120 --ECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPWPLPRPLPQDPLELAKLALRRMS 196 (228)
T ss_pred --HHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 7799999999876 9999999999999999988874 33333332232 233222 3345677776666654
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.058 Score=54.93 Aligned_cols=343 Identities=13% Similarity=0.083 Sum_probs=187.9
Q ss_pred hhHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCCChHHHHHHHHHHHHhCCCc-c--hHHH-----------HhcCCCC
Q 035847 3 IKNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVEL-C--AFLG-----------MFEKMPE 67 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~-----------~f~~~~~ 67 (523)
+++|+..+. |..++. .+...--..|-+.+++++|..++..+.+.+..- + ..+. +....|.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 455555555 333333 355555567778999999999999998776531 1 1111 3555555
Q ss_pred CCcchHHHHHH---HHHhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHH
Q 035847 68 RNVFSWTSMMG---MYNVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDY 120 (523)
Q Consensus 68 ~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~ 120 (523)
....+|..+-+ .++..|++.+|+++++.-.+.+ +.-.+-..|+.++|.+++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45556665554 4566899999999998773322 44445578999999999999
Q ss_pred HHHhcCCCCce----eHhHHHHHHHhcCCHH-HHHHHhhhcccccc--------------------C--ch--hhHhhHh
Q 035847 121 MISIKFEGNAC----VKRPVLDMFIKCGRME-MASGEFEEKDFSNL--------------------S--LL--KHGKEIH 171 (523)
Q Consensus 121 m~~~g~~p~~~----~~~~li~~~~~~g~~~-~A~~~f~~~~~~~~--------------------~--~~--~~~~~~~ 171 (523)
.++.. .+|.. .-|.|+.+-....-++ .++..|+. .+... . .+ ..+.++.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~-~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r 327 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKS-QVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVR 327 (652)
T ss_pred HHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99886 44542 2333333222222222 33334433 00000 0 00 0111111
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhc-C-ChHHHHHHHhcCCC--C--ChhhHHHHHHhhhhcCCccccchhhccCCchH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKC-R-YLKVAHCKFSKIKQ--K--HLVSWNAMLAGYALGGFREEITGFTQYGDGET 245 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~-g-~~~~A~~vf~~m~~--~--~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~ 245 (523)
.......+-.|.. .+.+++....++ . ....|..++...-+ | ..+.--+++. -....|+++.
T Consensus 328 ~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQ------------l~is~gn~~~ 394 (652)
T KOG2376|consen 328 ELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQ------------LKISQGNPEV 394 (652)
T ss_pred HHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHH------------HHHhcCCHHH
Confidence 1111121223332 223333322222 1 13334444333321 1 1223333333 5566788888
Q ss_pred HHHHHH--------HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 246 ALEFFS--------RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 246 A~~lf~--------~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
|++++. ...+.+-.|- +...++..+.+.++-+.|.+++...++.-....+ +-..-..+|-
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t----------~s~~l~~~~~ 462 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT----------GSIALLSLMR 462 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc----------cchHHHhHHH
Confidence 877777 4444344443 3344555566666666677776666552110000 0000112333
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPS 382 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~ 382 (523)
-+...-.++|+. ++|..+++++.+. -.+|..+...+|.+|++. +.+.|..+-..++-.+.
T Consensus 463 ~aa~f~lr~G~~--~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 463 EAAEFKLRHGNE--EEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKG 522 (652)
T ss_pred HHhHHHHhcCch--HHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCccc
Confidence 344445577888 9999999999874 478899999999999976 67888888888764443
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.77 E-value=0.0011 Score=63.83 Aligned_cols=157 Identities=12% Similarity=0.057 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
+..+.-..-.+|...|++++|.++++.- .+.......+. .|.+.++++.|.+.++.|.+.. .|
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vq------------i~L~~~R~dlA~k~l~~~~~~~--eD- 163 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQ------------ILLKMNRPDLAEKELKNMQQID--ED- 163 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHH------------HHHHTT-HHHHHHHHHHHHCCS--CC-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC--Cc-
Confidence 3333333335566778888888888765 44555556666 7788888888988888887642 33
Q ss_pred HHHHHHHHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 263 ISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 263 ~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
.|..-+..++.. ...+..|..+|+++.+. + .++..+.|.+..++...|++ ++|.+++
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~----------------~~t~~~lng~A~~~l~~~~~--~eAe~~L 224 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-F----------------GSTPKLLNGLAVCHLQLGHY--EEAEELL 224 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S------------------SHHHHHHHHHHHHHCT-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-c----------------CCCHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 444445555443 23578888888887552 1 23556777788888888888 8888887
Q ss_pred HHhHHhcCCccC-HhHHHHHHHHHHhhCCH-HHHHHHHHhCC
Q 035847 339 EMMKKEYNMEPA-MEQYCCMVDLLARAGQF-DDTLNFMKKMP 378 (523)
Q Consensus 339 ~~m~~~~g~~p~-~~ty~~li~~~~~~g~~-~~A~~~~~~m~ 378 (523)
.+.... .|+ ..+...+|-.....|+. +.+.+++.++.
T Consensus 225 ~~al~~---~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 225 EEALEK---DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHCCC----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHh---ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 775432 343 56666677777777776 66777777763
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0073 Score=54.23 Aligned_cols=180 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred HHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+|.+.|+...|..-+++-.+.+ +...|-+.|..+.|.+-|+..++.. +-+..+.|..-..+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHH
Confidence 4444444444444444444433 2223334444444444444444432 44677899999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYA 226 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~ 226 (523)
...|++| +...-..--..+|..+.-+-.+.|+.+.|+..|++-.+ |+. .+.-.+-.
T Consensus 123 ~q~F~~A------------------l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~--- 181 (250)
T COG3063 123 MQQFERA------------------LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR--- 181 (250)
T ss_pred HHHHHHH------------------HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH---
Confidence 9999982 33322222344677777777899999999999988654 332 35556666
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
...+.|++..|..+++.....+. ++..+.-..|.---..|+.+.+.+.-.++.+
T Consensus 182 ---------~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 182 ---------LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ---------HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77789999999999999888776 8888888888888888998888877666554
No 91
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.021 Score=56.80 Aligned_cols=219 Identities=10% Similarity=0.084 Sum_probs=144.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHH
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~ 187 (523)
|+.-.+.+-|+..++....++ ..|--+-.+|....+.++-.+.|++ ..+ +.| |..+|
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~------------------A~~---ldp~n~dvY 397 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNK------------------AED---LDPENPDVY 397 (606)
T ss_pred CCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHH------------------HHh---cCCCCCchh
Confidence 455566666666665532221 1244455566666666666666666 232 333 45566
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..--.++.-.+++++|..=|+.-..- ++.+|--+-. +..+.++++++...|++-+.+ ++-.+..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~------------a~Yr~~k~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCC------------ALYRQHKIAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHh-CCCCchH
Confidence 66666666678899999999887652 3445544433 666778999999999998875 5556788
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|+-.-..+...++++.|.+.++..++..-..+....| +-...--+++ .+--.+++ .+|..+++...+
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~---------~~plV~Ka~l-~~qwk~d~--~~a~~Ll~KA~e- 531 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN---------AAPLVHKALL-VLQWKEDI--NQAENLLRKAIE- 531 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc---------chhhhhhhHh-hhchhhhH--HHHHHHHHHHHc-
Confidence 8888899999999999999999988743221110000 0000001111 11123777 899999988764
Q ss_pred cCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+.|. ...|.+|-..-...|++++|+++|++-
T Consensus 532 --~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 532 --LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred --cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4565 578999999999999999999999984
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.71 E-value=0.031 Score=56.30 Aligned_cols=167 Identities=17% Similarity=0.230 Sum_probs=121.9
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M 253 (523)
..+|+ .+|-.+|+.--|..-+..|+.+|.+..+ + ++..++++|. -|| .++..-|.++|+-=
T Consensus 362 ~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE------------y~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 362 DIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME------------YYC-SKDKETAFRIFELG 427 (656)
T ss_pred ccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH------------HHh-cCChhHHHHHHHHH
Confidence 34444 4777888888888889999999998864 3 7778899988 555 56688899999864
Q ss_pred HhcCCCCCHHHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 254 IQTDMQPNTISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 254 ~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
... -+|...| ..-++-+.+.++-..++.+|+.....++.++. ....|+.+|+-=..-|++ .
T Consensus 428 Lkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k--------------s~~Iw~r~l~yES~vGdL--~ 489 (656)
T KOG1914|consen 428 LKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK--------------SKEIWDRMLEYESNVGDL--N 489 (656)
T ss_pred HHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh--------------hHHHHHHHHHHHHhcccH--H
Confidence 432 2343333 45667778889999999999999988777665 557899999999999999 8
Q ss_pred HHHHHHHHhHHhcC--CccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 333 EGWRYFEMMKKEYN--MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 333 ~a~~~~~~m~~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+.++-+++...+. ..|...+-..+++-|+-.+....-..-++.|
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88888888877654 5555566667777777666655444333333
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.67 E-value=0.0024 Score=65.85 Aligned_cols=112 Identities=15% Similarity=0.280 Sum_probs=82.5
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~ 313 (523)
|.+......+.+|+.+++.++.... -+--|..+-+-|++.|+++.|+++|-..
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------------------------- 791 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------------------------- 791 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc-------------------------
Confidence 5566777888899999998877543 3344677778899999999999987543
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
-.++-.|..|.+.|++ ++|.++-++.. |-...+..|-+-..-+-..|++.+|.+++-..
T Consensus 792 ~~~~dai~my~k~~kw--~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 792 DLFKDAIDMYGKAGKW--EDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred chhHHHHHHHhccccH--HHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 3466778899999999 88888755432 55666777777666777777777777765443
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.60 E-value=0.095 Score=52.93 Aligned_cols=131 Identities=16% Similarity=0.229 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhc-CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc-hHHHHhHHHhhh-------------
Q 035847 243 GETALEFFSRMIQT-DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL-STGVGIALISIQ------------- 307 (523)
Q Consensus 243 ~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y------------- 307 (523)
.+..-+.+++.... .+.| ..+|...++.--+...+..|+.+|....+.+..+ +++++++++..|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence 45566667766653 3344 4578888888889999999999999999988887 889999999888
Q ss_pred -CC--CCCcchH-HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 308 -GL--GTGSFVW-NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 308 -~~--~p~~~~~-n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+ -+|...| +..++-+...++- ..+..+|++.... ++.|+ ...|..+|+-=..-|++.-+.++-+++
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd--~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDD--NNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcc--hhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44 3454444 4456666666666 7888899988877 77777 478888888888889988888886664
No 95
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.58 E-value=0.013 Score=65.02 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=169.5
Q ss_pred CC-cchHHHHHHhccCCCChHHHHHHHHHHHHhC-CCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 20 EC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCG-VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 20 p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
|| ...|-..+.-....++++.|+.+.++....= +. +- +--...|.++++.-.-.|.-+...++|++..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~R---------Ee-eEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFR---------EE-EEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc---------hh-HHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 44 4567777777788899999999988877542 10 00 1124578888887777788888888888877
Q ss_pred Hcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 98 DEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 98 ~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
+.- |..-|.+.+..++|-++++.|.+. +.-...+|...++.+.+..+-+.|..++.+|
T Consensus 1525 qycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA------------- 1590 (1710)
T KOG1070|consen 1525 QYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRA------------- 1590 (1710)
T ss_pred HhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHH-------------
Confidence 654 778888899999999999999865 4456778999999999999989999998882
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHH
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETA 246 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A 246 (523)
++..--.-.+....-.+.+-.++|+.+.++.+|+.... +-...|+..|. .-.++|+.+.+
T Consensus 1591 -----L~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid------------~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1591 -----LKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID------------MEIKHGDIKYV 1653 (1710)
T ss_pred -----HhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH------------HHHccCCHHHH
Confidence 33201111344555666777889999999999998764 34568999999 88899999999
Q ss_pred HHHHHHHHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 247 LEFFSRMIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 247 ~~lf~~M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
..+|++....++.|-. +.|.--|..=-+.|+-+.++.+-..+.+
T Consensus 1654 R~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 9999999998887753 5666666665566766666665444443
No 96
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.0015 Score=51.77 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=62.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++...-. ..+...|
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--~~ie~kl-------------------------- 85 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--EDIENKL-------------------------- 85 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--hhHHHHH--------------------------
Confidence 67777999999999999999999 999999999998877643211 2222222
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
-+.+.++..|... +++|+..||+.++..+.+
T Consensus 86 -----------------~~LLtvYqDiL~~-~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 86 -----------------TNLLTVYQDILSN-KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred -----------------HHHHHHHHHHHHh-ccCCcHHHHHHHHHHHHH
Confidence 5567788888877 889999999988887764
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.54 E-value=0.026 Score=50.82 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=143.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|--.|...|+...|..-++++ ++. .|+ ..+|..+-..|-+.|..+.|.+-|+...
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekA------------------L~~---DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKA------------------LEH---DPSYYLAHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH------------------HHh---CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 344566789999999999999882 333 454 5588899999999999999999998754
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
+ .+....|..=. .+|..|++++|...|++-...---| -..||..+--+..+.|+.+.|+..+.+
T Consensus 97 sl~p~~GdVLNNYG~------------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 97 SLAPNNGDVLNNYGA------------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred hcCCCccchhhhhhH------------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 2 34455555555 6779999999999999988753222 346777776677789999999999999
Q ss_pred HHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH
Q 035847 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367 (523)
Q Consensus 288 ~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 367 (523)
.++..-. ...+.-.|-...-+.|+. -.|..+++..... ..++..+.-.-|+.-.+.|+-
T Consensus 165 aL~~dp~-----------------~~~~~l~~a~~~~~~~~y--~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 165 ALELDPQ-----------------FPPALLELARLHYKAGDY--APARLYLERYQQR--GGAQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHhCcC-----------------CChHHHHHHHHHHhcccc--hHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccH
Confidence 8875321 223455677777888999 9999999998765 348988888888888889998
Q ss_pred HHHHHH
Q 035847 368 DDTLNF 373 (523)
Q Consensus 368 ~~A~~~ 373 (523)
+.|.++
T Consensus 224 ~~a~~Y 229 (250)
T COG3063 224 AAAQRY 229 (250)
T ss_pred HHHHHH
Confidence 887766
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.51 E-value=0.013 Score=60.80 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=87.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
.+.+......+..|..+++.+.... .-..-|..+-+-|+..|+++.|.++|-++ +
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~----------------------~- 792 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA----------------------D- 792 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc----------------------c-
Confidence 3444455566666666666655442 22334556667777777777777777661 2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhhHHHHHHhhhhcCCccc--------------cchhhccCCch
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH--LVSWNAMLAGYALGGFREE--------------ITGFTQYGDGE 244 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~--~~t~~~li~~~~~~g~~~~--------------i~~~~~~g~~~ 244 (523)
.++--|++|.+.|++++|.++-.+...|. +++|-+--.-+-+.|++.+ |+.|-+.|..+
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDD 867 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcch
Confidence 34556788888888888888877655443 3345544444444554443 44555555555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
+.+++..+-.-..+ ..|-..+-.-+-..|++..|+.-|-.
T Consensus 868 dmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHh
Confidence 55555443321111 23344445556667888888775533
No 99
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.0084 Score=56.99 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=128.6
Q ss_pred HHHHHHhcCCchHHHHHHHHhhHcc----HHHHhh---------ccCChHHHHHHHHHHHHhcCCCCceeHh-HHHHHHH
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLIDEG----VYKACS---------ELKDHRVGKDVYDYMISIKFEGNACVKR-PVLDMFI 141 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~---------~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~ 141 (523)
|+--|.+.+++.+|..+..++.... ++++.. +...++.|.+.|..+-.++..-|+.... ++-+.+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 4446778899999999887775433 333322 2234677888888888888777766544 4555566
Q ss_pred hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhH
Q 035847 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSW 218 (523)
Q Consensus 142 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~ 218 (523)
-.-++|+.+-.+.. +++.-..-|...+| +..+++..|+..+|+++|-.+.. +|-++|
T Consensus 371 L~~qFddVl~YlnS-------------------i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y 430 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNS-------------------IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILY 430 (557)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHH
Confidence 66778888888877 66633344555554 67889999999999999998876 456788
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH-HHhhccCChhHHHHHHHHHHHh
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL-AACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
-+++. ..|.++++++-|+++|-.+.. ..+..+..-+| +-|.+.+.+--|.+.|+.+...
T Consensus 431 ~s~LA-----------rCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 431 KSMLA-----------RCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHH-----------HHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 88775 278899999999988766643 33445544444 5688889998888888887653
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.46 E-value=0.0081 Score=56.09 Aligned_cols=182 Identities=13% Similarity=-0.008 Sum_probs=121.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.....+-.+...|.+.|+.++|...|++..+ |+. .+|..+-. .|.+.|++++|+..|+++.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~------------~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAY------------AYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHH
Confidence 3455677788889999999999999997753 432 35666666 88899999999999999987
Q ss_pred cCCC-CCH-HHHHHHHHHhhcc--------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc-chHHHHHHHHH
Q 035847 256 TDMQ-PNT-ISLSGVLAACAQV--------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS-FVWNSLIDMYG 324 (523)
Q Consensus 256 ~g~~-p~~-~t~~~ll~a~~~~--------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~-~~~n~li~~~~ 324 (523)
..-. |.. .++..+-.++.+. |+.+.|.+.+..+.+..-.. ...+.++.......... ...-.+-..|.
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 177 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRMDYLRNRLAGKELYVARFYL 177 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 111 1333333334333 67888999988887753221 11222221110000000 00124556788
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
+.|+. ++|...|+...+.+.-.|. ...+..+..++...|++++|..+++.+.
T Consensus 178 ~~g~~--~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 178 KRGAY--VAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HcCCh--HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999 9999999999877433343 5788899999999999999999988864
No 101
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.072 Score=51.98 Aligned_cols=256 Identities=12% Similarity=0.056 Sum_probs=158.2
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 138 (523)
-|+..-..+-..+...|+..+|+..|++.+..+ .--.+.+.|+.+....+.+.+.... .-....|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 367777888888889999999999998766544 1112234556555555555544321 111222222222
Q ss_pred HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH---HHHHhcCChHHHHHHHhcCC--CC
Q 035847 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM---DFYAKCRYLKVAHCKFSKIK--QK 213 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li---~~~~k~g~~~~A~~vf~~m~--~~ 213 (523)
......++..|+.+-++ .+..|....-++| ..+...|+.++|.--|+... .|
T Consensus 309 ~l~~~K~~~rAL~~~eK-----------------------~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEK-----------------------CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhhhhhHHHHHHHHHH-----------------------HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 33344556666665555 1222222111221 44556788888888887654 33
Q ss_pred -ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH-HHhhc-cCChhHHHHHHHHHHH
Q 035847 214 -HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL-AACAQ-VKGFKLGKEIHGYVLR 290 (523)
Q Consensus 214 -~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~i~~~~~~ 290 (523)
+..+|.-|+. .|.-.|++.+|.-+-++-... +.-+..|.+.+- ..|.- ...-++|+++++.-.+
T Consensus 366 ~rL~~Y~GL~h------------sYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 366 YRLEIYRGLFH------------SYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred hhHHHHHHHHH------------HHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 6788999999 888888888887766554332 223444544441 23332 3344778777766554
Q ss_pred hcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHH
Q 035847 291 HHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD 369 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~ 369 (523)
. .|+ +..-+.+..-+...|+. +++..+++.-... .||....+.|-+.+...+.+.+
T Consensus 433 ~------------------~P~Y~~AV~~~AEL~~~Eg~~--~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 433 I------------------NPIYTPAVNLIAELCQVEGPT--KDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred c------------------CCccHHHHHHHHHHHHhhCcc--chHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHH
Confidence 2 222 23456667777888888 8999999887754 7899999999999999999999
Q ss_pred HHHHHHh-CCCCCCC
Q 035847 370 TLNFMKK-MPFEPSS 383 (523)
Q Consensus 370 A~~~~~~-m~~~p~~ 383 (523)
|++.+.. +...|+.
T Consensus 490 am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHhcCccc
Confidence 9888776 4555543
No 102
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.074 Score=53.95 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=131.5
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
.-+-..+++.+.+++++...+.. -|..+...|+..+-..+=..+++. .+....+|=++---|.-.|+..+
T Consensus 252 d~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 33334444444444444444333 122233333333333333333333 24455666666666666666677
Q ss_pred HHHHhhhc----------------cccccCchhhHhhHhhhh---hhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 149 ASGEFEEK----------------DFSNLSLLKHGKEIHPHH---LKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 149 A~~~f~~~----------------~~~~~~~~~~~~~~~~~~---~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
|++.|.++ +++..+.-+.+..-+..+ |.. ...|.. |.. --|.+.++++.|.+.|.+
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~L--Ylg--mey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSL--YLG--MEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHH--HHH--HHHHHhccHHHHHHHHHH
Confidence 77766662 222222222222222111 111 233332 222 236667888888888876
Q ss_pred CCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CC---C-CCHHHHHHHHHHhhccCChhH
Q 035847 210 IKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DM---Q-PNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 210 m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~---~-p~~~t~~~ll~a~~~~g~~~~ 280 (523)
... | |....+-+-- ...+.+.+.+|...|+.-.+. .+ + --..|++.|-.+|.+.+..++
T Consensus 406 A~ai~P~Dplv~~Elgv------------vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGV------------VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHhcCCCcchhhhhhhh------------eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 542 3 4455555533 444567788888888876621 11 1 134556666667777777777
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~ 360 (523)
|...+++.+... +.|..++.++--.|...|.+ +.|.+.|..-. .+.|+..+-+.|+..
T Consensus 474 AI~~~q~aL~l~-----------------~k~~~~~asig~iy~llgnl--d~Aid~fhKaL---~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 474 AIDYYQKALLLS-----------------PKDASTHASIGYIYHLLGNL--DKAIDHFHKAL---ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHcC-----------------CCchhHHHHHHHHHHHhcCh--HHHHHHHHHHH---hcCCccHHHHHHHHH
Confidence 777777766521 34566677777777777777 77777777654 567776666665553
No 103
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.43 E-value=0.0065 Score=60.32 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=84.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
.-|..-+. +-+.|++++|+..++.+...- +-|...+....+.+.+.++.++|.
T Consensus 308 a~YG~A~~-~~~~~~~d~A~~~l~~L~~~~--------------------------P~N~~~~~~~~~i~~~~nk~~~A~ 360 (484)
T COG4783 308 AQYGRALQ-TYLAGQYDEALKLLQPLIAAQ--------------------------PDNPYYLELAGDILLEANKAKEAI 360 (484)
T ss_pred HHHHHHHH-HHHhcccchHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCChHHHH
Confidence 33444443 346788888888888766542 223334444456666666666666
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYA 226 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~ 226 (523)
+.|++ ... ..|+ ....-.+-.+|.+.|+..+|.++++.-.. .|...|..|-.+|.
T Consensus 361 e~~~k-------------------al~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 361 ERLKK-------------------ALA--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHH-------------------HHh--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 66666 222 2343 34444555666666666666666655432 24556666666555
Q ss_pred hcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 227 LGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 227 ~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
+.|+..+ -.+|.-.|++++|+..+....+. ++++..++
T Consensus 420 ~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 420 ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 5444444 33666778888888887777664 33444443
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.066 Score=49.96 Aligned_cols=70 Identities=10% Similarity=-0.018 Sum_probs=43.9
Q ss_pred hCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 035847 15 LTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFY 94 (523)
Q Consensus 15 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 94 (523)
..|+..-..-|.+++..+.+...+..+.++...-.+.. .++....+.|-.+|-+..++..|-..|+
T Consensus 3 ~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYe 68 (459)
T KOG4340|consen 3 GSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS--------------PRSRAGLSLLGYCYYRLQEFALAAECYE 68 (459)
T ss_pred cccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--------------ccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556666666666666777776655544432 2355666677777777777788887777
Q ss_pred HhhH
Q 035847 95 LLID 98 (523)
Q Consensus 95 ~m~~ 98 (523)
++..
T Consensus 69 QL~q 72 (459)
T KOG4340|consen 69 QLGQ 72 (459)
T ss_pred HHHh
Confidence 7654
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.35 E-value=0.0083 Score=56.03 Aligned_cols=173 Identities=11% Similarity=0.000 Sum_probs=113.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCc----eeHhHHHHHHHhc
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA----CVKRPVLDMFIKC 143 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~ 143 (523)
.....+-.+...+.+.|++++|...|++.... .|+. .++..+...|.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---------------------------~p~~~~~~~a~~~la~~~~~~ 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR---------------------------YPFSPYAEQAQLDLAYAYYKS 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------CCCchhHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888876653 2432 3556677888899
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCch-hHHHHHHHHHHhc--------CChHHHHHHHhcCCC-
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESDL-LVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~-~~~~~li~~~~k~--------g~~~~A~~vf~~m~~- 212 (523)
|+++.|...|++ ... ..-.|.. .++..+-..+.+. |+.++|.+.|+.+.+
T Consensus 84 ~~~~~A~~~~~~-------------------~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 84 GDYAEAIAAADR-------------------FIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCHHHHHHHHHH-------------------HHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999988 322 0111111 1333344444443 678888888887753
Q ss_pred -CCh-hhHHHHHH----------hhhhcCCccccchhhccCCchHHHHHHHHHHhcCC-CC-CHHHHHHHHHHhhccCCh
Q 035847 213 -KHL-VSWNAMLA----------GYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-QP-NTISLSGVLAACAQVKGF 278 (523)
Q Consensus 213 -~~~-~t~~~li~----------~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~-~p-~~~t~~~ll~a~~~~g~~ 278 (523)
|+. ..+.++.. .....+ ..|.+.|++.+|+..|++.....- .| ....+..+..++...|+.
T Consensus 145 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~a-----~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 145 YPNSEYAPDAKKRMDYLRNRLAGKELYVA-----RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK 219 (235)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence 433 22222210 000000 067788999999999999887532 23 356788899999999999
Q ss_pred hHHHHHHHHHHHh
Q 035847 279 KLGKEIHGYVLRH 291 (523)
Q Consensus 279 ~~a~~i~~~~~~~ 291 (523)
++|..+++.+...
T Consensus 220 ~~A~~~~~~l~~~ 232 (235)
T TIGR03302 220 DLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887653
No 106
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.34 E-value=0.0061 Score=60.80 Aligned_cols=120 Identities=11% Similarity=0.129 Sum_probs=94.0
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+...++++.|+++|+++.+.. |+.. ..+...+...++-.+|.+++...++.. +.|...
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-----------------p~d~~L 236 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-----------------PQDSEL 236 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-----------------CCCHHH
Confidence 5556789999999999999875 6543 346666666777788888877776531 224445
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH-hHHHHHHHHHHhhCCHHHHHHHHHhCCCCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-EQYCCMVDLLARAGQFDDTLNFMKKMPFEP 381 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~p 381 (523)
.+.-...|.+.++. +.|..+.+++.+ ..|+. .+|..|..+|...|++++|+-.++.+|+.|
T Consensus 237 L~~Qa~fLl~k~~~--~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 237 LNLQAEFLLSKKKY--ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 55566778899999 999999999975 47885 699999999999999999999999998554
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.30 E-value=0.19 Score=57.05 Aligned_cols=299 Identities=9% Similarity=-0.049 Sum_probs=174.2
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcc--hHHHHHHHHHhcCCchHHHHHHHHhhHc-c------
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVF--SWTSMMGMYNVLGYYEEIVNLFYLLIDE-G------ 100 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~-g------ 100 (523)
..+...++++.+..........--..+. -..+... .-..+-..+...|++++|...+++.... .
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~-------~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNI-------ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCc-------ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 3344667888888877766543110000 0001111 1112223445789999999998876541 1
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCC---C--CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHh
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFE---G--NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGK 168 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~ 168 (523)
+-..+...|+++.|...+.......-. + ...+++.+-..+...|+++.|...++++ .
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-----------l 558 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA-----------F 558 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------H
Confidence 333455689999999888887754211 1 1234455666788899999999998881 1
Q ss_pred hHhhhhhhcCCCC--C-chhHHHHHHHHHHhcCChHHHHHHHhcCCC------CC--hhhHHHHHHhhhhcCCccccchh
Q 035847 169 EIHPHHLKKDDLE--S-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ------KH--LVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 169 ~~~~~~~~~~g~~--~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~------~~--~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
.+. -.. +.. + ...++..+-..+...|++++|...+++... +. ..++..+-. .+
T Consensus 559 ~~~---~~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~------------~~ 622 (903)
T PRK04841 559 QLI---EEQ-HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK------------IS 622 (903)
T ss_pred HHH---HHh-ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH------------HH
Confidence 111 111 211 1 233455566667778999999988877532 11 123333334 66
Q ss_pred hccCCchHHHHHHHHHHhc----CCCCCH-HHH-HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC
Q 035847 238 TQYGDGETALEFFSRMIQT----DMQPNT-ISL-SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~----g~~p~~-~t~-~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p 311 (523)
...|++++|.+.+.+.... +..+.. ... ...+..+...|+.+.+.+.+............ .
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~-------------~ 689 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH-------------F 689 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch-------------h
Confidence 7889999999999887542 111111 111 11123344578888888876554321100000 0
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....+..+..++...|+. ++|..+++..... .|..++ ..+...+-.++.+.|+.++|...+.+.
T Consensus 690 ~~~~~~~~a~~~~~~g~~--~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 690 LQGQWRNIARAQILLGQF--DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011234567778889999 9999998877652 233332 345666777888999999999888774
No 108
>PLN02789 farnesyltranstransferase
Probab=97.29 E-value=0.09 Score=51.35 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=132.3
Q ss_pred CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcC-CHHHHHHHhhhcccccc
Q 035847 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNL 161 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~A~~~f~~~~~~~~ 161 (523)
+.+.+|...|+.....+ +..++|..+.+.+++. .|+ ..+|+.--..+.+.| ++++++..+++
T Consensus 34 ~~~~~a~~~~ra~l~~~--------e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~------ 97 (320)
T PLN02789 34 PEFREAMDYFRAVYASD--------ERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAED------ 97 (320)
T ss_pred HHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHH------
Confidence 34455555555443322 4555666666655543 343 345655555566666 57888888887
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCCh--HHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccch
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYL--KVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~--~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
+-. .-..+..+|+..-..+.+.|+. +++..+++.+.+ +|..+|+-.-- .
T Consensus 98 -------------~i~-~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w------------~ 151 (320)
T PLN02789 98 -------------VAE-DNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQW------------V 151 (320)
T ss_pred -------------HHH-HCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHH------------H
Confidence 322 1233445666554445556652 566777766653 57778888777 7
Q ss_pred hhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc---CCh----hHHHHHHHHHHHhcCCchHHHHhHHHhhhCC
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV---KGF----KLGKEIHGYVLRHHIQLSTGVGIALISIQGL 309 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---g~~----~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~ 309 (523)
+.+.|++++|++.++++.+.+.. |...|+.....+.+. |.. +...+....+++..
T Consensus 152 l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~----------------- 213 (320)
T PLN02789 152 LRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN----------------- 213 (320)
T ss_pred HHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-----------------
Confidence 77788999999999999987654 455555544444443 222 23333333333321
Q ss_pred CCCcchHHHHHHHHHhcC----CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 310 GTGSFVWNSLIDMYGRCG----AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 310 ~p~~~~~n~li~~~~~~g----~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
+-|...|+-+-..|...+ +. .+|.+++.+..+. + ..+......|++.|+..
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~--~~~~~~~~~~~~~-~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSD--PEVSSVCLEVLSK-D-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccc--hhHHHHHHHhhcc-c-CCcHHHHHHHHHHHHhh
Confidence 347788998888887733 34 5688888776542 1 33467788899999863
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.019 Score=52.70 Aligned_cols=144 Identities=11% Similarity=0.110 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
.++.+.+.......+......-...|++.|++++|++.... |-..+... .=+..+
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----------------------~~~lE~~A--l~VqI~ 147 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----------------------GENLEAAA--LNVQIL 147 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----------------------cchHHHHH--HHHHHH
Confidence 34555555444444444444455678999999999999876 33333333 334456
Q ss_pred HhcCChHHHHHHHhcCCCC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 195 AKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
.|..+++-|.+.++.|.+- +-.|-+-|-.+|.+ ...-.+...+|+-+|++|-+. ..|+..+.+....++.
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~--------la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVK--------LATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH--------HhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 6788899999999999984 44577767775552 223345689999999999764 7899999999999999
Q ss_pred ccCChhHHHHHHHHHHHhc
Q 035847 274 QVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g 292 (523)
..|++++|..+++......
T Consensus 219 ~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HhcCHHHHHHHHHHHHhcc
Confidence 9999999999999988753
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.27 E-value=0.011 Score=53.67 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=106.8
Q ss_pred HHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
+..|.+.|++..+..-.+.+... ...+...++.+++...+...++.. +.|...|..|-..|...|++++|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~- 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP--LHQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQ- 98 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc--cccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH-
Confidence 35677888887764444332111 112223455666666666666653 55788899999999999999999999998
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHH-HHhcCC--hHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcC
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDF-YAKCRY--LKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGG 229 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~-~~k~g~--~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g 229 (523)
... +.| +..++..+-.+ |...|+ .++|.+++++..+ | +...+..+-.
T Consensus 99 ------------------Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~------ 152 (198)
T PRK10370 99 ------------------ALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLAS------ 152 (198)
T ss_pred ------------------HHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHH------
Confidence 322 233 56677777775 467777 5899999998764 3 5567777777
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+.+.|++++|+..|+.+.+. ..|+..-+.
T Consensus 153 ------~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 153 ------DAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred ------HHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 888999999999999999875 345554443
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.22 E-value=0.0083 Score=62.28 Aligned_cols=228 Identities=13% Similarity=0.100 Sum_probs=159.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 74 TSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 74 ~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
-.+-..+...|-..+|+.+|++..... ++..|+..|+...|..+...-.+. +||...|..+.+..-...-++.|.++
T Consensus 402 ~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawEl 479 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWEL 479 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHH
Confidence 456667788899999999999876554 899999999999999998888773 78999999999888888888888888
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGG 229 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g 229 (523)
++. ... + .--.+-....+.++++++.+.|+.-.+ --..+|-..=.
T Consensus 480 sn~-------------------~sa-r------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~------ 527 (777)
T KOG1128|consen 480 SNY-------------------ISA-R------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGC------ 527 (777)
T ss_pred hhh-------------------hhH-H------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccH------
Confidence 887 211 1 000000111226788888888875432 23346665544
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
+..+.+++..|.+.|..-.. ..||. ..||.+-.++.+.++-.+|...+.+..+....
T Consensus 528 ------~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-------------- 585 (777)
T KOG1128|consen 528 ------AALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-------------- 585 (777)
T ss_pred ------HHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--------------
Confidence 66678888888888887765 45654 56888888888888888888888888876533
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHH
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~ 362 (523)
+...|-+-+....+.|.+ ++|.+.+.+|.......-|..+-..++....
T Consensus 586 ---~w~iWENymlvsvdvge~--eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 586 ---HWQIWENYMLVSVDVGEF--EDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred ---CCeeeechhhhhhhcccH--HHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 334566666677778888 8888877776553222224455554444443
No 112
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0018 Score=57.68 Aligned_cols=118 Identities=15% Similarity=0.224 Sum_probs=79.9
Q ss_pred CCCceeHhHHHHHHHhc-----CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChH
Q 035847 127 EGNACVKRPVLDMFIKC-----GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLK 201 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~-----g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~ 201 (523)
..|..+|..+|+.|.+. |.++=....+.. |...|++.|..+|+.||+.+=| |.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~-------------------M~efgv~kDL~~Y~~LLDvFPK-g~fv 103 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKK-------------------MDEFGVEKDLEVYKALLDVFPK-GKFV 103 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHH-------------------HHHcCCcccHHHHHHHHHhCCC-CCcc
Confidence 56777888888888754 666666666666 6666999999999999987765 3221
Q ss_pred HHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh-hH
Q 035847 202 VAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF-KL 280 (523)
Q Consensus 202 ~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~ 280 (523)
-..+|+. +-. -...+-+-|++++++|...|+.||..|+..|++.+++.+.. .+
T Consensus 104 -p~n~fQ~-----------~F~--------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 104 -PRNFFQA-----------EFM--------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred -cccHHHH-----------Hhc--------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 1122221 111 12345567999999999999999999999999999887654 33
Q ss_pred HHHHHHHHHH
Q 035847 281 GKEIHGYVLR 290 (523)
Q Consensus 281 a~~i~~~~~~ 290 (523)
..++.--|.+
T Consensus 158 ~~rmmYWmpk 167 (228)
T PF06239_consen 158 YRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.19 Score=54.48 Aligned_cols=190 Identities=10% Similarity=0.079 Sum_probs=127.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPV 136 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 136 (523)
.|...-+.-+.++..++.+.+-++++++..-.. ++-.-+-..+.....+..+++-... .| .+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~------~i 1054 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-AP------DI 1054 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-ch------hH
Confidence 355555667899999999999999999886544 2222222334444455555543322 22 23
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~ 216 (523)
-......+-+++|..+|++ +..+....+.||. ..++++.|.+.-++..+|.
T Consensus 1055 a~iai~~~LyEEAF~ifkk------------------------f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~-- 1105 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKK------------------------FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA-- 1105 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHH------------------------hcccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--
Confidence 4455567778899999887 3445555666664 3577888888877776664
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
.|+.+-. +-.+.|.+.+|++-|-+. -|+..|.-+++++.+.|.+++-.+.+...++..-+|.
T Consensus 1106 vWsqlak------------AQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1106 VWSQLAK------------AQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY 1167 (1666)
T ss_pred HHHHHHH------------HHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc
Confidence 5888888 777888888888766432 2567788888888888888888888877777655553
Q ss_pred HHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC
Q 035847 297 TGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 297 ~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~ 329 (523)
+ =+.||-+|++.+++
T Consensus 1168 i------------------d~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1168 I------------------DSELIFAYAKTNRL 1182 (1666)
T ss_pred c------------------hHHHHHHHHHhchH
Confidence 2 24566666666666
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.13 E-value=0.044 Score=59.17 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=129.7
Q ss_pred CcchHHHHHHHHHhcCCchHH-HHHHHHhhHccHHHHhhccCChHHHHH-HHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEI-VNLFYLLIDEGVYKACSELKDHRVGKD-VYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~gll~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
+....+.+=.+.+.-|..++| .++..+..+ ++...+......++.. +.+.... +..++..+-.|-......|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~ 102 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ--VLERHAAVHKPAAALPELLDYVRR--YPHTELFQVLVARALEAAHRS 102 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH--HHHHhhhhcchHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCc
Confidence 344445555566677777776 456666555 5655555554444432 2333222 456678888888889999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAML 222 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li 222 (523)
++|..+++. .-. +.|| ......+...+.+.+++++|....++..+ |+.. ..+.+-
T Consensus 103 ~ea~~~l~~-------------------~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 103 DEGLAVWRG-------------------IHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHH-------------------HHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 999999988 332 4665 44667778888899999999999888765 4333 344444
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
. ++.+.|++++|.++|++.... .|+ ..++.++-.++-..|+.++|...|+...+.
T Consensus 162 ~------------~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 K------------SWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred H------------HHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 677889999999999999873 344 678888888888899999999999888774
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.075 Score=56.13 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=82.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...|..+.+.|.+.++++.|+-.+..|....-. -.+-+....++ .+=.-+-..-.+.|.+++|+.+|++-++-+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga----RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D 830 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA----RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD 830 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH----HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4577999999999999999999888888743210 00111111232 211122223356799999999999988888
Q ss_pred HH-HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VY-KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++ +.|-..|.+++|.++-+.=-+..+.. ||-.--.-+-..++.+.|++.|++
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhccHHHHHHHHHh
Confidence 44 45667899999998877544433332 333333444456889999999998
No 116
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.11 E-value=0.047 Score=54.40 Aligned_cols=198 Identities=9% Similarity=0.051 Sum_probs=122.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.|..+-..+...|+.+++.+.+... .+..-..++. .........+...|++++|..+++..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~ 69 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAA------------------AQALAARATERERAHVEALSAWIAGDLPKALALLEQL 69 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHH------------------HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445556666667777776666551 1110111121 11222233456789999999988875
Q ss_pred CC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhccCChhHHHHHHH
Q 035847 211 KQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-SLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 211 ~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
.+ | |...++. ..++.. .....+....+.+.+.. .....|+.. ....+-..+...|++++|.+.++
T Consensus 70 l~~~P~~~~a~~~-~~~~~~--------~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 70 LDDYPRDLLALKL-HLGAFG--------LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHCCCcHHHHHH-hHHHHH--------hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 4 3344442 211110 12234555566665554 223344443 33445557778999999999999
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH--hHHHHHHHHHHhh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM--EQYCCMVDLLARA 364 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~ 364 (523)
...+.. +.+...+..+-..|...|++ ++|..+++.........|+. ..|..+...+...
T Consensus 139 ~al~~~-----------------p~~~~~~~~la~i~~~~g~~--~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 139 RALELN-----------------PDDAWAVHAVAHVLEMQGRF--KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHhhC-----------------CCCcHHHHHHHHHHHHcCCH--HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 988742 23456778888899999999 99999999887642222333 3456788889999
Q ss_pred CCHHHHHHHHHhC
Q 035847 365 GQFDDTLNFMKKM 377 (523)
Q Consensus 365 g~~~~A~~~~~~m 377 (523)
|++++|..++++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999985
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.05 E-value=0.021 Score=59.47 Aligned_cols=209 Identities=14% Similarity=0.127 Sum_probs=125.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+...+-+.|-+..|..++++. ..|..+|..|...|+..+|..+..+ ..+ -
T Consensus 404 laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q------------------~le---k 453 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQ------------------ELE---K 453 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHH------------------Hhc---C
Confidence 334444455555555555543 2334455555555555555555444 122 2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
+||...|..+.+..-.---.++|.++++....+--.+|+-++- .+++++++.+.|+.-.+.. .-
T Consensus 454 ~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~---------------~~~~fs~~~~hle~sl~~n-pl 517 (777)
T KOG1128|consen 454 DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLIL---------------SNKDFSEADKHLERSLEIN-PL 517 (777)
T ss_pred CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccc---------------cchhHHHHHHHHHHHhhcC-cc
Confidence 5666666666666555555666777666544332223333332 4677777777777644421 11
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC-CcchHHHHHHHHHhcCCCchHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT-GSFVWNSLIDMYGRCGAIQKNEGWRYFE 339 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p-~~~~~n~li~~~~~~g~~~~~~a~~~~~ 339 (523)
-..||-..=.+.-++++...+.+.|..-.. ..| +...||++-.+|.+.|+- .+|...+.
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvt------------------L~Pd~~eaWnNls~ayi~~~~k--~ra~~~l~ 577 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVT------------------LEPDNAEAWNNLSTAYIRLKKK--KRAFRKLK 577 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhh------------------cCCCchhhhhhhhHHHHHHhhh--HHHHHHHH
Confidence 234444443344456666666666554443 233 456899999999999999 99999998
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..+- + .-+...|...+-...+.|.+++|.+.+.++
T Consensus 578 EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 578 EALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88764 5 444556666777778899999999998775
No 118
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.05 E-value=0.0032 Score=63.11 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=95.6
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 135 (523)
-+.+....+++.+....+++++..++.+.+... +++.|-..|..+.+..++..=...|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 356677778888888888899999998887764 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC 197 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~ 197 (523)
||+.+.+.|++..|.++... |...+.-.+..|+..-+.++.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~-------------------~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATE-------------------MMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHH-------------------HHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999988 44436666777887777777776
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.98 E-value=0.65 Score=49.10 Aligned_cols=407 Identities=13% Similarity=0.083 Sum_probs=223.4
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhcc---CCCChHHHHHHHHHHHHhCCCc----chHHH---HhcCCC----CCC
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCP---KLNNLELGIQVHAHLIVCGVEL----CAFLG---MFEKMP----ERN 69 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~~g~~~----~~~~~---~f~~~~----~~~ 69 (523)
++++.-+..-..++..-+..++..+...+. ..++.+.+ .+...+...-... |..+. ++..+. +.|
T Consensus 244 ~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 244 KEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred hHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 455666666666667777777777776554 44556655 3333332222222 22222 222221 357
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
...|..|--+....|+++.+.+.|++....- +-..+...|.-..|..++..-... .|++..-..++-++
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~--~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK--SEQPSDISVLLMAS 400 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc--ccCCCcchHHHHHH
Confidence 7788888888888888888888887754322 333444555555666666554332 32222223333322
Q ss_pred Hh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC-----------ChHHHHH
Q 035847 141 IK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR-----------YLKVAHC 205 (523)
Q Consensus 141 ~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g-----------~~~~A~~ 205 (523)
.- -|.++++...-.++ .+..-...+ ......|-.+--+|...- ...++.+
T Consensus 401 klc~e~l~~~eegldYA~ka--------------i~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKA--------------ISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred HHHHhchhhhhhHHHHHHHH--------------HHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 22 23444444443331 100000001 111223333333333221 1233444
Q ss_pred HHhcCC-----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 206 KFSKIK-----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 206 vf~~m~-----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
.+++-. .|+++-|-++ -|+..++.+.|++..++...-+-.-+...|-.|.-.+...+++..
T Consensus 466 ale~av~~d~~dp~~if~lal--------------q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLAL--------------QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 454432 3555555555 567788899999999998887556677777777667777788888
Q ss_pred HHHHHHHHHH-hcCCc------------------hHHHHhHHHhhh----------------------------------
Q 035847 281 GKEIHGYVLR-HHIQL------------------STGVGIALISIQ---------------------------------- 307 (523)
Q Consensus 281 a~~i~~~~~~-~g~~~------------------~~~~~~~li~~y---------------------------------- 307 (523)
|..+.+.... .|... ...+...+++..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccch
Confidence 8888766544 33200 001111111111
Q ss_pred -------------------------CC--CCC------cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhH
Q 035847 308 -------------------------GL--GTG------SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQ 353 (523)
Q Consensus 308 -------------------------~~--~p~------~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~t 353 (523)
.. .|+ ...|...-+.+.+.+.. ++|...+.+..+ +.|- ...
T Consensus 612 ~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~--~~a~~CL~Ea~~---~~~l~~~~ 686 (799)
T KOG4162|consen 612 TSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGND--DEARSCLLEASK---IDPLSASV 686 (799)
T ss_pred hhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHh---cchhhHHH
Confidence 11 122 12355666777788888 888877777654 3443 445
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCC-----------CCCCHHHHHH--HHHHHHhhCCCCCcceeEEEecCCC
Q 035847 354 YCCMVDLLARAGQFDDTLNFMKK-MPFEPSSA-----------EPCNPDIAEH--AARHLFELEPLSSGKVHSFIAGDTS 419 (523)
Q Consensus 354 y~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~-----------~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ 419 (523)
|...-..+-..|.+++|.+.|.. .-+.|+.+ .-|+..+++. .....++.+|.+...|..
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~------- 759 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY------- 759 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH-------
Confidence 55555677788999999988765 56788887 5666666666 777788888887754432
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCcCCchhhhhhHHHHHHHccccCCCCCcEEE
Q 035847 420 HSLVHKISEKLMRLYSEIKKIGYMKRIPACGHSEKLALAFGLISTSPGSPLRV 472 (523)
Q Consensus 420 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~la~a~~l~~~~~~~~~~i 472 (523)
|-.-++..|-.- .-.+-.+.|..|-.+.|-.|..+
T Consensus 760 -------------LG~v~k~~Gd~~-----~Aaecf~aa~qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 760 -------------LGEVFKKLGDSK-----QAAECFQAALQLEESNPVLPFSN 794 (799)
T ss_pred -------------HHHHHHHccchH-----HHHHHHHHHHhhccCCCcccccc
Confidence 222334444322 22455667777877777666433
No 120
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.98 E-value=0.015 Score=58.11 Aligned_cols=126 Identities=10% Similarity=0.137 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..-.+|+..+...++++.|..+|+++.+.+...+..|.. .+...++-.+|++++++..+.. +-|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~------------v~l~~~~E~~AI~ll~~aL~~~-p~d~~L 236 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLAR------------VYLLMNEEVEAIRLLNEALKEN-PQDSEL 236 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHH------------HHHhcCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 344556666777899999999999998766555556777 7777888899999999988642 235555
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
+..-...|.+.++.+.|.++...+.+. .|+ -.+|..|..+|.+.|++ ++|+..++.+.-
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l------------------sP~~f~~W~~La~~Yi~~~d~--e~ALlaLNs~Pm 296 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL------------------SPSEFETWYQLAECYIQLGDF--ENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHhcCCH--HHHHHHHhcCcC
Confidence 555566688899999999999998873 344 44999999999999999 999999998863
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.59 Score=50.91 Aligned_cols=245 Identities=13% Similarity=0.142 Sum_probs=135.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 145 (523)
...|+.+-.+-.+.|...+|++-|-+-..-+ +++.+.+.|.+++-...+-...+..-+| .+=+.||-+|+|.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNR 1181 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhch
Confidence 4679999999999999999999886544333 8888888888888777776666654444 445678888888888
Q ss_pred HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhh
Q 035847 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225 (523)
Q Consensus 146 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~ 225 (523)
+.+-..+... ||+.-...+-+-|...|.++.|.-++. ++..|.-|-.
T Consensus 1182 l~elE~fi~g--------------------------pN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~-- 1228 (1666)
T KOG0985|consen 1182 LTELEEFIAG--------------------------PNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLAS-- 1228 (1666)
T ss_pred HHHHHHHhcC--------------------------CCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHH--
Confidence 8777666543 333333334444444455555554444 3334444444
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHH--------------HHHHHHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGK--------------EIHGYVLRH 291 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~--------------~i~~~~~~~ 291 (523)
.+...|++..|.+.-+.. -+..||--+-.||...+.+..|. ++.+.-...
T Consensus 1229 ----------TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~r 1292 (1666)
T KOG0985|consen 1229 ----------TLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDR 1292 (1666)
T ss_pred ----------HHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhc
Confidence 444445555444433221 13345555544554433332221 122222222
Q ss_pred cCCchHHHHhHHHhhh----CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc------cCHhHHHHHHHH
Q 035847 292 HIQLSTGVGIALISIQ----GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME------PAMEQYCCMVDL 360 (523)
Q Consensus 292 g~~~~~~~~~~li~~y----~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~------p~~~ty~~li~~ 360 (523)
|. +.-||..+ |+ ......|+-|--.|++-. + ++.++.++-.-.+-++. -..+.|+-++-.
T Consensus 1293 Gy------FeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p--~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfL 1363 (1666)
T KOG0985|consen 1293 GY------FEELISLLEAGLGLERAHMGMFTELAILYSKYK-P--EKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFL 1363 (1666)
T ss_pred Cc------HHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-H--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 21 12222222 44 445566777777776654 2 44444433332221211 124678888888
Q ss_pred HHhhCCHHHHHHHH
Q 035847 361 LARAGQFDDTLNFM 374 (523)
Q Consensus 361 ~~~~g~~~~A~~~~ 374 (523)
|.+-..+|.|.-.+
T Consensus 1364 Y~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1364 YDKYEEYDNAALTM 1377 (1666)
T ss_pred HHhhhhhhHHHHHH
Confidence 88888888775443
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.18 Score=50.92 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=70.4
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc--HHHHh---
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--VYKAC--- 105 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--ll~~~--- 105 (523)
+....|+++.|...|...+... .+|-+.|+.=..+|+..|++++|++==.+-.+.. +-++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--------------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~ 76 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--------------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRK 76 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--------------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHh
Confidence 4457899999999999887654 4689999999999999999999987766655543 33444
Q ss_pred ----hccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 106 ----SELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 106 ----~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
.-.|++++|..-|.+=++.. +.+...++.|..++
T Consensus 77 Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 77 GAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 44678889988888766552 33555667777766
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.032 Score=51.18 Aligned_cols=129 Identities=11% Similarity=0.000 Sum_probs=102.2
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
..|..+.+++.....+.|++..|...|.+ ... .-.+|..+||.+--+|.+.|+.+.|+.-
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rk-------------------A~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~a 156 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRK-------------------AAR-LAPTDWEAWNLLGAALDQLGRFDEARRA 156 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHH-------------------Hhc-cCCCChhhhhHHHHHHHHccChhHHHHH
Confidence 34556777788999999999999999999 555 5577899999999999999999999998
Q ss_pred HhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHH
Q 035847 207 FSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 207 f~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
|.+..+ .+....|.|-- .|.-.|+.+.|..++..-...+.. |...-..+.-+....|+++.|+.
T Consensus 157 y~qAl~L~~~~p~~~nNlgm------------s~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 157 YRQALELAPNEPSIANNLGM------------SLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHHHhccCCchhhhhHHH------------HHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 887653 34556777766 777789999999999998876543 45555556667788999999998
Q ss_pred HHHHH
Q 035847 284 IHGYV 288 (523)
Q Consensus 284 i~~~~ 288 (523)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 85443
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.91 E-value=0.061 Score=49.37 Aligned_cols=156 Identities=10% Similarity=-0.040 Sum_probs=122.5
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
.-+-..+--.|+-+.+..+...... .|...-+..+. ...++|++.+|+..|++...- -+||..+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk------------~~~~~g~~~~A~~~~rkA~~l-~p~d~~~ 136 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGK------------NQIRNGNFGEAVSVLRKAARL-APTDWEA 136 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHH------------HHHHhcchHHHHHHHHHHhcc-CCCChhh
Confidence 4455666667887777777766432 34444555666 888999999999999998764 3578899
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|+.+--+|.+.|+++.|..-|.+..+.- ..+....|.|--.|.-.|+. +.|..++......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-----------------~~~p~~~nNlgms~~L~gd~--~~A~~lll~a~l~ 197 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELA-----------------PNEPSIANNLGMSLLLRGDL--EDAETLLLPAYLS 197 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhc-----------------cCCchhhhhHHHHHHHcCCH--HHHHHHHHHHHhC
Confidence 9999999999999999999999988732 22446678888889999999 9999999988754
Q ss_pred cCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
-.-|...-..+..+.+..|++++|.++...-
T Consensus 198 --~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 198 --PAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred --CCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 2336777778889999999999999987653
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.064 Score=54.53 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=129.2
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHH
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRV 113 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~ 113 (523)
+.|++..|.-.|+..++.. .-++..|--|=.....+++-..|+..+.+-.+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd--------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld------------- 349 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--------------PQHAEAWQKLGITQAENENEQNAISALRRCLELD------------- 349 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-------------
Confidence 4455555555555555442 1256777777777777777777777777766644
Q ss_pred HHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc-----------------------cccccCchhhHhhH
Q 035847 114 GKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK-----------------------DFSNLSLLKHGKEI 170 (523)
Q Consensus 114 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~-----------------------~~~~~~~~~~~~~~ 170 (523)
+-+..+.-+|--.|...|.=..|+..+++- ...+...+..-.++
T Consensus 350 -------------P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~ 416 (579)
T KOG1125|consen 350 -------------PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQEL 416 (579)
T ss_pred -------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHH
Confidence 112333333334444444444444444441 00111111222233
Q ss_pred hhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 171 HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 171 ~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
|-.+....+..+|..+++.|--.|--.|+++.|...|+... +| |-..||-|=. .++...+.++|+
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA------------tLAN~~~s~EAI 484 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA------------TLANGNRSEEAI 484 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH------------HhcCCcccHHHH
Confidence 33333443656788888899888999999999999999765 35 6678999999 888899999999
Q ss_pred HHHHHHHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 248 EFFSRMIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.-|++.++ ++|+- +-|| |--+|.+.|.+++|.+.+=..+.
T Consensus 485 sAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 485 SAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999987 57764 3455 44478999999999887655443
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.89 E-value=0.012 Score=50.32 Aligned_cols=100 Identities=15% Similarity=-0.013 Sum_probs=72.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+-..+.+.|++++|...|+. .-. --..+..+|..+-..+.+.|++++|...|+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~-------------------al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSW-------------------LVM-AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44566777888888888888887 322 1233567788888888888888888888887654
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
.+...|..+-. .+.+.|++++|...|+...+ +.|+...+.
T Consensus 87 l~p~~~~a~~~lg~------------~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~ 129 (144)
T PRK15359 87 LDASHPEPVYQTGV------------CLKMMGEPGLAREAFQTAIK--MSYADASWS 129 (144)
T ss_pred cCCCCcHHHHHHHH------------HHHHcCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 35567777777 77788888888888888776 346554443
No 127
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.17 Score=53.68 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=131.7
Q ss_pred CcchHHHHHH--hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 21 CTVTYALIFQ--RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 21 ~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
|..|-..+++ .|...|+.+.|.+-...++ +-..|..|-+.|++..+++-|.-.+..|..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~ 785 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN 785 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------------------hhHHHHHHHHHhhhhccccHHHHhhhhhhh
Confidence 5566666663 4567788888877665543 457799999999999999999888888765
Q ss_pred cc------------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccc
Q 035847 99 EG------------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSN 160 (523)
Q Consensus 99 ~g------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 160 (523)
.. +.-.....|.+++|++++.+-.+.. .|=..|-..|.+++|.++-+.
T Consensus 786 aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~----- 851 (1416)
T KOG3617|consen 786 ARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAET----- 851 (1416)
T ss_pred hhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhh-----
Confidence 32 2222345566666666666655432 244556666777777776554
Q ss_pred cCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------------------------CCCh
Q 035847 161 LSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-------------------------QKHL 215 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-------------------------~~~~ 215 (523)
-. .+.. ..||.--..-+-..+|++.|.+.|+.-. +|..
T Consensus 852 --------------~D--RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 852 --------------KD--RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred --------------cc--ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 11 1111 1133322333333455555555554332 1222
Q ss_pred hh-HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 216 VS-WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 216 ~t-~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
.. |...|. ..|+.+.|+.+|...+ -|-+++...|-.|+.++|-+|-++--
T Consensus 915 ~~WWgqYlE---------------S~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg----- 965 (1416)
T KOG3617|consen 915 YSWWGQYLE---------------SVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG----- 965 (1416)
T ss_pred HHHHHHHHh---------------cccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc-----
Confidence 11 222222 4577777777776543 24456666677777777777654321
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
|....-.|-..|-..|++ .+|..+|.+.+
T Consensus 966 -----------------d~AAcYhlaR~YEn~g~v--~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 -----------------DKAACYHLARMYENDGDV--VKAVKFFTRAQ 994 (1416)
T ss_pred -----------------cHHHHHHHHHHhhhhHHH--HHHHHHHHHHH
Confidence 334444566777777777 77887776554
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.87 E-value=0.012 Score=49.58 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=70.6
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
......+...+.+.|++++|...|+. ... ....+...+..+-..|.+.|+.++|...|+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQL-------------------LAA-YDPYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777788888888888877 333 2233566777778888888888888888876
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
..+ .+..+|..+-. .|...|++++|+..|+...+. .|+...+..
T Consensus 77 ~~~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAE------------CLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHhcCCCChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 542 34455655555 677788888888888877663 455555443
No 129
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.84 E-value=0.025 Score=51.20 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=67.5
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH-HHhcCC-
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM-FIKCGR- 145 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~- 145 (523)
.|...|..+-..|...|++++|+..|++..+.. +.+..++..+-.+ |...|+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------------------------P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------------------------GENAELYAALATVLYYQAGQH 124 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcCCC
Confidence 356677777777777777777777776665532 3356666666665 466666
Q ss_pred -HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 146 -MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 146 -~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
.++|..++++ ... .-.-+..++..+-..+.+.|++++|...|+.+.+
T Consensus 125 ~~~~A~~~l~~-------------------al~-~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 125 MTPQTREMIDK-------------------ALA-LDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred CcHHHHHHHHH-------------------HHH-hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4788888887 332 1223566777788888888888888888887753
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.84 E-value=0.0079 Score=51.42 Aligned_cols=102 Identities=11% Similarity=-0.117 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+..+-..+.+.|++++|+..|+...... +.+..+|..+-..+.+.|++++|...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--------------------------PWSWRAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455666777888888888887766643 45777888888899999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHH
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNA 220 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~ 220 (523)
|++ .-. --..+...+..+-.++.+.|+.++|...|+... .|+-..|..
T Consensus 81 y~~-------------------Al~-l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 81 YGH-------------------ALM-LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHH-------------------HHh-cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 988 322 223467788888888999999999999998764 355544443
No 131
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.80 E-value=0.0056 Score=48.53 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=50.5
Q ss_pred cCChHHHHHHHHHHHHhcC-CCCceeHhHHHHHHHhcCC--------HHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 108 LKDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGR--------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+++...-.+|..+++.|+ .|++.+||.++.+.++..- +-..+.+|+. ++..
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqD------------------iL~~- 98 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQD------------------ILSN- 98 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHH------------------HHHh-
Confidence 3455555555555555668 8999999999999887632 3445556666 3444
Q ss_pred CCCCchhHHHHHHHHHHh
Q 035847 179 DLESDLLVNNSLMDFYAK 196 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k 196 (523)
+++|+..+||.++..+.+
T Consensus 99 ~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 899999999999988765
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.79 E-value=0.072 Score=53.18 Aligned_cols=140 Identities=8% Similarity=0.058 Sum_probs=92.1
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-hhHHHHHHhhhhcCCccccchhh
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-VSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
+..+.++......++. .+-|+.......+.+.+.++..+|.+.|+.+.. |+. ..+-.+-. +|.
T Consensus 320 ~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~------------all 385 (484)
T COG4783 320 GQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ------------ALL 385 (484)
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH------------HHH
Confidence 4444454444444443 233455556667888888888888888887753 552 34444555 677
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
+.|++.+|+.++++.... .+-|...|..|-.+|...|+..++..-..
T Consensus 386 ~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-------------------------------- 432 (484)
T COG4783 386 KGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-------------------------------- 432 (484)
T ss_pred hcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH--------------------------------
Confidence 788888888888887664 34577888888888888888777665433
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY 354 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty 354 (523)
.+|...|++ ++|...+...++. ++++..++
T Consensus 433 --E~~~~~G~~--~~A~~~l~~A~~~--~~~~~~~~ 462 (484)
T COG4783 433 --EGYALAGRL--EQAIIFLMRASQQ--VKLGFPDW 462 (484)
T ss_pred --HHHHhCCCH--HHHHHHHHHHHHh--ccCCcHHH
Confidence 346677888 8888888777764 34444443
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.79 E-value=0.011 Score=59.37 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=53.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHh--cCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISI--KFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
++..+....+++.++.++.+.... ....-..|..++|+.|.+.|..+.++.++.. -...
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n-------------------~~~y 132 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN-------------------RLQY 132 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC-------------------hhhc
Confidence 555555555666666655555543 1212233445666666666666666666665 4444
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+-||..++|.||+.+.+.|++..|.+|...|.
T Consensus 133 GiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 133 GIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred ccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 666666666666666666666666666655543
No 134
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.011 Score=56.83 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=99.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc-----HHHHhh-----ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----VYKACS-----ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----ll~~~~-----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
.+|..+|+..-+.+..+.|..+|.+.++.+ +.-+++ ..++.+.|..||+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 478899999999999999999999988665 333333 346777799999999877 678889999999999
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d---~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
.+.|+.+.|..+|++ .-. .+.++ ..+|...++.=.+.|+++.+.++.+++.+ |+.
T Consensus 81 ~~~~d~~~aR~lfer-------------------~i~-~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 81 IKLNDINNARALFER-------------------AIS-SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHTT-HHHHHHHHHH-------------------HCC-TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHhCcHHHHHHHHHH-------------------HHH-hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999 222 22222 35999999999999999999999888764 444
Q ss_pred hhHHHHHH
Q 035847 216 VSWNAMLA 223 (523)
Q Consensus 216 ~t~~~li~ 223 (523)
.+...++.
T Consensus 141 ~~~~~f~~ 148 (280)
T PF05843_consen 141 NSLELFSD 148 (280)
T ss_dssp -HHHHHHC
T ss_pred hHHHHHHH
Confidence 44444444
No 135
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.73 E-value=0.91 Score=51.60 Aligned_cols=260 Identities=12% Similarity=0.039 Sum_probs=162.7
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHHHHHHhcCCchHHHHHHHHhhHc----c--
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-- 100 (523)
.+...|+++.|...++.....-. ..+ ...++.+-..+...|++++|...+.+.... |
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELP-------------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCC-------------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch
Confidence 34468899999998888765311 111 234566666777899999999999877542 1
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHh----cCCC---CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISI----KFEG---NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~----g~~p---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+-..+...|+++.|.+.++..... |... ....+..+-..+...|++++|...++++
T Consensus 528 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a-------- 599 (903)
T PRK04841 528 HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG-------- 599 (903)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh--------
Confidence 344566789999999988876653 2111 1223444555677789999999998881
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHH-----HHHhhhhcCCcccc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNA-----MLAGYALGGFREEI 234 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~-----li~~~~~~g~~~~i 234 (523)
..+ ....+.......+..+...+...|+.+.|.+.++.... . ....+.. .+.
T Consensus 600 ---l~~----~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------- 661 (903)
T PRK04841 600 ---LEV----LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI----------- 661 (903)
T ss_pred ---HHh----hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH-----------
Confidence 010 01102111234455566778889999999888876532 1 1111211 112
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHH---HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTI---SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p 311 (523)
.+...|+.+.|.+++............. .+..+..++...|+.++|...+.......-.. +..+
T Consensus 662 -~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~------------g~~~ 728 (903)
T PRK04841 662 -YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSL------------RLMS 728 (903)
T ss_pred -HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CchH
Confidence 4456789999999987765422211111 13445566778899999999988876632110 1111
Q ss_pred -CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 312 -GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 312 -~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
...+...+-.+|.+.|+. ++|...+.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~--~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRK--SEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 123455667788899999 9999999988764
No 136
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.72 E-value=0.012 Score=48.78 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH-HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA-LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFE 339 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~-li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~ 339 (523)
|..++..+|-++++.|+++....+.+..- |+.++...-.. +.....+.|+..+-.+++.+|+..|++ ..|+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i--~~al~~vd 76 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDI--FSALKLVD 76 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccH--HHHHHHHH
Confidence 56789999999999999999998886543 44433211111 111113479999999999999999999 99999999
Q ss_pred HhHHhcCCccCHhHHHHHHHHHHh
Q 035847 340 MMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 340 ~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
...+.|++.-+...|..|+.-...
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999899999999985543
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.70 E-value=0.037 Score=47.29 Aligned_cols=117 Identities=13% Similarity=0.094 Sum_probs=83.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCc--eeHhHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNA--CVKRPV 136 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l 136 (523)
..|..++..+ ..++...+...++.+.... +-..+...|++++|...|+.+....-.|+. ...-.|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4456666666 3677777777777776654 556677789999999999998887623321 234446
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
-..+...|++++|+..++. ... -......+...-+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~-------------------~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQ-------------------IPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHh-------------------ccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7788889999999999876 333 223445677788899999999999998874
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.59 E-value=0.015 Score=44.40 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
|..+...+.+.|++++|+..|++..+.. +.+..++..+...|...|++++|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 56 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--------------------------PDNADAYYNLAAAYYKLGKYEEALED 56 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--------------------------CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666677777777776655432 33346677788888888999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|+. ... -...+..++..+...+...|+.+.|...|....
T Consensus 57 ~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 57 YEK-------------------ALE-LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHH-------------------HHh-CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 888 332 123344677888888889999999988887643
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.57 E-value=0.018 Score=48.46 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+......+...+.+.|++++|.+.|+.....+ +.+...+..+-..|.+.|+++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------p~~~~~~~~la~~~~~~~~~~~ 69 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------PYNSRYWLGLAACCQMLKEYEE 69 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777788888888887765543 4466778888888888899999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
|...|++ ... ....+..++..+-..|...|+.++|...|+...+
T Consensus 70 A~~~~~~-------------------~~~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 70 AIDAYAL-------------------AAA-LDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHH-------------------HHh-cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988888 332 2233566777777888888999999988887653
No 140
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.51 E-value=0.1 Score=48.42 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh
Q 035847 201 KVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278 (523)
Q Consensus 201 ~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 278 (523)
-..+..|...+ ++|-.+|-+++..|... .--+.++++-....++.|.+-|+.-|..+|+.||+.+-+..-.
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~-------sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi 123 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEK-------SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI 123 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHh-------hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc
Confidence 33466677666 67888888888743321 1123466666777777888888888888888887776553221
Q ss_pred hHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHH
Q 035847 279 KLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMV 358 (523)
Q Consensus 279 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li 358 (523)
|. ..+-...--|-+.. +=+..++++|... |+.||-++-..||
T Consensus 124 --------------------------------P~-nvfQ~~F~HYP~QQ----~C~I~vLeqME~h-GVmPdkE~e~~lv 165 (406)
T KOG3941|consen 124 --------------------------------PQ-NVFQKVFLHYPQQQ----NCAIKVLEQMEWH-GVMPDKEIEDILV 165 (406)
T ss_pred --------------------------------cH-HHHHHHHhhCchhh----hHHHHHHHHHHHc-CCCCchHHHHHHH
Confidence 11 01111111222222 5588999999876 9999999999999
Q ss_pred HHHHhhCCH-HHHHHHHHhCC
Q 035847 359 DLLARAGQF-DDTLNFMKKMP 378 (523)
Q Consensus 359 ~~~~~~g~~-~~A~~~~~~m~ 378 (523)
++++|.+.. .+..+++--||
T Consensus 166 n~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhccccccHHHHHHHHHhhh
Confidence 999998874 44555544454
No 141
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.51 E-value=0.075 Score=57.42 Aligned_cols=66 Identities=11% Similarity=-0.027 Sum_probs=36.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+-.|-......|.+++|..+++...+.- .-+...+-.+...+.+.+++++|+..+++.....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------------Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF--------------PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 34445555555555666666666666555442 1134455555666666666666666666555443
No 142
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.46 E-value=0.62 Score=45.47 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=42.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 270 (523)
|.-+...|....|.++-.+.+-||-.-|-..|. ++++.++|++-.++-.. +-+++-|-.++.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~------------aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIK------------ALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHH------------HHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 444445566666666666555566666666666 55555555544443221 112355555555
Q ss_pred HhhccCChhHHHHHHHH
Q 035847 271 ACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~ 287 (523)
+|.+.|...+|..+...
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 66565655555555444
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.44 E-value=0.1 Score=44.50 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGS 313 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~ 313 (523)
.+ ..++...+...++.+....-.-. ....-.+-..+...|++++|...++.+....-.++. -.
T Consensus 21 ~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l--------------~~ 85 (145)
T PF09976_consen 21 AL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL--------------KP 85 (145)
T ss_pred HH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH--------------HH
Confidence 55 47889999999999988632211 122223446677899999999999999987622221 11
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
...-.|...+...|+. ++|+..++..... ......+...-+.|.+.|+.++|...+++
T Consensus 86 ~a~l~LA~~~~~~~~~--d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 86 LARLRLARILLQQGQY--DEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2344577888899999 9999999775432 33455677788899999999999998875
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.44 E-value=0.94 Score=50.04 Aligned_cols=275 Identities=8% Similarity=0.008 Sum_probs=140.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCC
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGR 145 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~ 145 (523)
..+...|..||..|...+++++|+++.++-.+.. |+.. .|-.+-..|.+.++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---------------------------P~~i~~yy~~G~l~~q~~~ 80 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH---------------------------KKSISALYISGILSLSRRP 80 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------------------------CcceehHHHHHHHHHhhcc
Confidence 3467889999999999999999999988655432 2211 11111123344444
Q ss_pred HHHHHHHhhhc-cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHH
Q 035847 146 MEMASGEFEEK-DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAM 221 (523)
Q Consensus 146 ~~~A~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~l 221 (523)
.+++..+ .-. .......+.....+... +.. ..-+...+-.|-.+|-+.|+.++|..++++..+ .|...-|-+
T Consensus 81 ~~~~~lv-~~l~~~~~~~~~~~ve~~~~~-i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 81 LNDSNLL-NLIDSFSQNLKWAIVEHICDK-ILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred hhhhhhh-hhhhhcccccchhHHHHHHHH-HHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 4333333 100 00011111111111111 111 112233556666777777777777777777654 344555656
Q ss_pred HHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc-hH--H
Q 035847 222 LAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL-ST--G 298 (523)
Q Consensus 222 i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~-~~--~ 298 (523)
-. .|+.. ++++|.+++...... +....+...+.+++..+......- +. .
T Consensus 157 AY------------~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~ 208 (906)
T PRK14720 157 AT------------SYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR 208 (906)
T ss_pred HH------------HHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence 55 55555 666666666655443 222334444444444444322110 00 0
Q ss_pred HHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHH-hhCCHHHHHHHHHh
Q 035847 299 VGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLA-RAGQFDDTLNFMKK 376 (523)
Q Consensus 299 ~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~-~~g~~~~A~~~~~~ 376 (523)
+-+.+...-+...-+.++-.+-..|-...++ +++..+|+...+. .| |.....-++..|. +-++.....++++.
T Consensus 209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~--~~~i~iLK~iL~~---~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 209 IERKVLGHREFTRLVGLLEDLYEPYKALEDW--DEVIYILKKILEH---DNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHhhhhhh--hHHHHHHHHHHhc---CCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 1111111112234456667777888888889 9999999988853 34 3556666666664 22233333333333
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 377 MPFEPSSAEPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 377 m~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
-++.. ...++..+..-+++.+.+.+.+-.
T Consensus 284 s~l~~---~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 284 SDIGN---NRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred hcccc---CCccHHHHHHHHHHHeeecCCCEE
Confidence 33221 124455666666777777666543
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.43 E-value=0.16 Score=55.75 Aligned_cols=233 Identities=9% Similarity=0.076 Sum_probs=148.9
Q ss_pred CCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----HhcCCCCCCcchHHHHHHHHHhcCCchHHH
Q 035847 17 NPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----MFEKMPERNVFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 17 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 90 (523)
++.| +...+..|+..+-..+++++|.++.+...+.....-.+.+ .|..-+..|.... .++.......++.-+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHH
Confidence 3444 4567888999998999999999998866554321111111 1212111222222 5555566666664444
Q ss_pred HHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc--cccc
Q 035847 91 NLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--DFSN 160 (523)
Q Consensus 91 ~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--~~~~ 160 (523)
.+...|...+ +..+|.+.|+.+++.++++++++.. .-|+.+.|.+--.|+.. ++++|..++.+| ....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~ 181 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence 4445555444 6777788999999999999999887 56788999999999999 999999999885 1222
Q ss_pred cCchhhHhhHhhhhh------------------hcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHH
Q 035847 161 LSLLKHGKEIHPHHL------------------KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWN 219 (523)
Q Consensus 161 ~~~~~~~~~~~~~~~------------------~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~ 219 (523)
........+++..+. .+.|...-+.++-.|-..|-+..+++++..+|..+.+ .|.-...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 233444444444333 3334344445555666778888899999999988764 4556667
Q ss_pred HHHHhhhhcCCccc--------cchhhcc-CCchHHHHHHHHH
Q 035847 220 AMLAGYALGGFREE--------ITGFTQY-GDGETALEFFSRM 253 (523)
Q Consensus 220 ~li~~~~~~g~~~~--------i~~~~~~-g~~~~A~~lf~~M 253 (523)
-++.+|. ..+.+. +.+..+. ..+..|+.-|+..
T Consensus 262 ~l~~~y~-~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~ 303 (906)
T PRK14720 262 ELIRFYK-EKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKN 303 (906)
T ss_pred HHHHHHH-HHccCcchHHHHHHHhccccCCccHHHHHHHHHHH
Confidence 7777665 222222 4455555 4457777777765
No 146
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.29 E-value=0.83 Score=49.80 Aligned_cols=156 Identities=13% Similarity=0.059 Sum_probs=91.6
Q ss_pred chHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 86 YEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 86 ~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
...|+..|-+-.+.. +-..|+...|...|+.-|....+.. ..|...+.+..+.|+...+++.|..+.-.+
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555554444333 2233333335566777777665543 346667888889999999998888875441
Q ss_pred ------------------cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 035847 157 ------------------DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217 (523)
Q Consensus 157 ------------------~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t 217 (523)
..-..+....+..-+.... ...| |...|..|..+|.++|+...|.++|+....-+..+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 1111122222222222222 3344 67789999999999999999999998776533322
Q ss_pred -HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 218 -WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 218 -~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
|.-.-.+- .-+..|.+.+|+..+.....
T Consensus 630 ~y~~fk~A~----------~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAV----------MECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHH----------HHHHhhhHHHHHHHHHHHHH
Confidence 22111100 23567778888777766543
No 147
>PLN02789 farnesyltranstransferase
Probab=96.25 E-value=1.1 Score=43.94 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=126.5
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhHcc------
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG-YYEEIVNLFYLLIDEG------ 100 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g------ 100 (523)
+-..+...+..+.|..+.+.+++.. .-+..+|+.--..+...| .+++++..++++.+..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--------------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa 108 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--------------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI 108 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--------------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH
Confidence 3344445567777777777777653 224556765555555666 5799999998887654
Q ss_pred ---HHHHhhccCC--hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhh
Q 035847 101 ---VYKACSELKD--HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHL 175 (523)
Q Consensus 101 ---ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~ 175 (523)
---.+.+.++ .+.+.++.+.+++.. +-|..+|+..-..+.+.|++++|+..+++ +
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~-------------------~ 168 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQ-------------------L 168 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------H
Confidence 1111223343 356778888888664 45778899888899999999999999998 3
Q ss_pred hcCCCCCchhHHHHHHHHHHhc---CCh----HHHHHHHhcCC--C-CChhhHHHHHHhhhhcCCccccchhhcc----C
Q 035847 176 KKDDLESDLLVNNSLMDFYAKC---RYL----KVAHCKFSKIK--Q-KHLVSWNAMLAGYALGGFREEITGFTQY----G 241 (523)
Q Consensus 176 ~~~g~~~d~~~~~~li~~~~k~---g~~----~~A~~vf~~m~--~-~~~~t~~~li~~~~~~g~~~~i~~~~~~----g 241 (523)
-. .-..|...|+-....+.+. |.. +++........ . .|..+|+-+-. .+... +
T Consensus 169 I~-~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~------------ll~~~~~~l~ 235 (320)
T PLN02789 169 LE-EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG------------LFKDDKEALV 235 (320)
T ss_pred HH-HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH------------HHhcCCcccc
Confidence 22 1233556666665555444 222 34444443332 2 36678998887 44442 4
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
...+|.+.+.+..+.+ ..+......|++.++.
T Consensus 236 ~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 236 SDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566888888866643 2356777788888876
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.17 Score=47.38 Aligned_cols=263 Identities=12% Similarity=0.100 Sum_probs=150.5
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH-----------------HhcC
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG-----------------MFEK 64 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----------------~f~~ 64 (523)
++.+|++++..-.++.. .+....+.|-.+|-...++..|-..++++...-.....+.. +...
T Consensus 25 ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35677777776665532 26667777777777888888888888887654321111110 1111
Q ss_pred CC-CCCcchHHHHHHHH--HhcCCchHHHHHHHHhhHcc----HH-HHh--hccCChHHHHHHHHHHHHh-cCCCCceeH
Q 035847 65 MP-ERNVFSWTSMMGMY--NVLGYYEEIVNLFYLLIDEG----VY-KAC--SELKDHRVGKDVYDYMISI-KFEGNACVK 133 (523)
Q Consensus 65 ~~-~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g----ll-~~~--~~~~~~~~a~~~~~~m~~~-g~~p~~~~~ 133 (523)
|. .++...-..-+.+- -+.+++..+..+.++...+| ++ .+| .+.|+.+.|.+-|....+. |+.| ...|
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAY 182 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAY 182 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHH
Confidence 11 12221111111111 23466666666666666544 22 233 3678999999988887765 4554 5678
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh---hhcCCCCC----c--hhHHHHHH-------HHHHhc
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH---LKKDDLES----D--LLVNNSLM-------DFYAKC 197 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~----d--~~~~~~li-------~~~~k~ 197 (523)
|.-+.-| +.|+.+.|++...+. ++.|..-|... |...|+.. | +..-++++ ..+-+.
T Consensus 183 niALaHy-~~~qyasALk~iSEI-------ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 183 NLALAHY-SSRQYASALKHISEI-------IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred HHHHHHH-hhhhHHHHHHHHHHH-------HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 7666544 567889999887771 12222222110 11111111 1 11122333 345677
Q ss_pred CChHHHHHHHhcCCC-----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 035847 198 RYLKVAHCKFSKIKQ-----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272 (523)
Q Consensus 198 g~~~~A~~vf~~m~~-----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 272 (523)
|+.+.|.+-+-.|+- -|.+|...+-- . --.+++.+..+-+.-+.+.+. -...||..++-.|
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al------------~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQAL------------M-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHH------------h-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 999999999999973 46666544422 1 124556666555555555432 3467999999999
Q ss_pred hccCChhHHHHHHHHH
Q 035847 273 AQVKGFKLGKEIHGYV 288 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~ 288 (523)
|+..-++.|-.++.+-
T Consensus 321 CKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAEN 336 (459)
T ss_pred hhhHHHhHHHHHHhhC
Confidence 9999999988886553
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.16 E-value=0.033 Score=42.31 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+...+...|++++|..+|++ ... -...+..++..+...|...|+.++|.+.|+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEK-------------------ALE-LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHH-------------------HHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999988 332 1223446788888999999999999999987543
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+..+|..+.. .+...|++++|...|.+..+
T Consensus 63 ~~~~~~~~~~~~~~------------~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 63 LDPDNAKAYYNLGL------------AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CCCcchhHHHHHHH------------HHHHHHhHHHHHHHHHHHHc
Confidence 34457777777 88889999999999988765
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.10 E-value=0.042 Score=52.79 Aligned_cols=143 Identities=13% Similarity=0.098 Sum_probs=102.6
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+|..+|+..-+.+.++.|..+|.+| .+...+..++.+..+++..++ .++.+.|.+||+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a------------------~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~g 62 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRA------------------RKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERG 62 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH------------------HcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 47888999999999999999999991 333234566666666665432 46677799999987
Q ss_pred CC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH---HHHHHHHHHhhccCChhHHHHH
Q 035847 211 KQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT---ISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 211 ~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~i 284 (523)
.+ .+..-|..-|. -+.+.|+.+.|-.+|++.... +.++. ..|...++-=.+.|+++...++
T Consensus 63 lk~f~~~~~~~~~Y~~------------~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 63 LKKFPSDPDFWLEYLD------------FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HHHHTT-HHHHHHHHH------------HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHCCCCHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 64 57778888888 888999999999999998865 33332 4899999888889999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhh
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y 307 (523)
...+.+. .|+......+++-|
T Consensus 130 ~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 130 EKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHHH--hhhhhHHHHHHHHh
Confidence 9888774 33333444455544
No 151
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.00 E-value=3 Score=45.17 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCch-HHHHHHHHHhHHhcCCccCHhHH-HHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 316 WNSLIDMYGRCGAIQK-NEGWRYFEMMKKEYNMEPAMEQY-CCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~-~~a~~~~~~m~~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
-|.||+.|-+.++.+. -+|+-+++.-.. ..|...++ -.+|..|+-.|-+..|.++++.+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt---~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT---KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh---cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 3577778887777611 233333333222 23444333 357788888899999999988875
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.80 E-value=2.1 Score=41.81 Aligned_cols=103 Identities=12% Similarity=0.138 Sum_probs=62.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
-+...|+...|.++-++.. .||..-|-..|.+++..+++++-.++-.. +...+-
T Consensus 186 ~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----------------------kKsPIG 239 (319)
T PF04840_consen 186 KLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----------------------KKSPIG 239 (319)
T ss_pred HHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----------------------CCCCCC
Confidence 5555666666666655542 36666677777777777777665554211 123366
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|-.++..|.+.|.. .+|..+...+ ++.--+..|.+.|++.+|.+.--+.
T Consensus 240 yepFv~~~~~~~~~--~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 240 YEPFVEACLKYGNK--KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred hHHHHHHHHHCCCH--HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 77777777777777 6776665542 1234456666777777776665444
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.80 E-value=1.4 Score=43.11 Aligned_cols=71 Identities=15% Similarity=0.209 Sum_probs=57.3
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
.|++++|.+-|+.|.... +.-..-+.|+.+.|.+.-+..-.. .|. .-.+.+++...+..|+++.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 599999999999997654 444445788888888887776543 454 45788999999999999999999
Q ss_pred hhh
Q 035847 153 FEE 155 (523)
Q Consensus 153 f~~ 155 (523)
.+.
T Consensus 211 vd~ 213 (531)
T COG3898 211 VDA 213 (531)
T ss_pred HHH
Confidence 998
No 154
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.79 E-value=0.84 Score=42.76 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=99.6
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
-..+.+.|++++|++.|+++...- +..++-+.++.+.|...++..++.--.....-|.-.+.+.+...
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 444566788889999888887643 44455566666666666666665421111122222222222100
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-------LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-------~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t 217 (523)
. ....|.. .........| ...+..+|+-|=...-..+|..-+..+...=..-
T Consensus 119 ~---~~~~~~~------------------~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~ 177 (243)
T PRK10866 119 L---DDSALQG------------------FFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 177 (243)
T ss_pred c---chhhhhh------------------ccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 0000000111 1234555666655555666665555443211111
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
--.+.. -|.+.|.+..|+.=|+.+.+. +.+......-.+..++...|..++|.++...+.
T Consensus 178 e~~ia~------------~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAE------------YYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH------------HHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 112333 688899999999999999873 455566777788899999999999998776554
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.78 E-value=0.38 Score=46.31 Aligned_cols=156 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHh----cCCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQ----TDMQ 259 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~----~g~~ 259 (523)
..|.-.+..|.+.|+...|-+++..+ -. .|-+. |++++|++.|++-.. .| .
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l-----------A~------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL-----------AE------------IYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH-----------HH------------HHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH-----------HH------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 34555667788888888877776653 23 56666 788888888887654 23 2
Q ss_pred CC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc-hHHHHHHHHHhcCCCchHHHHH
Q 035847 260 PN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 260 p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~-~~n~li~~~~~~g~~~~~~a~~ 336 (523)
|. ..++..+...+.+.|++++|.++++.+.+.-...+.. +.++. .|-..+-++...|++ ..|.+
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----------~~~~~~~~l~a~l~~L~~~D~--v~A~~ 217 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-----------KYSAKEYFLKAILCHLAMGDY--VAARK 217 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----------GHHHHHHHHHHHHHHHHTT-H--HHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----------chhHHHHHHHHHHHHHHcCCH--HHHHH
Confidence 22 2445667777889999999999999988754332210 11111 122233356667888 89999
Q ss_pred HHHHhHHhc-CCccC--HhHHHHHHHHHHh--hCCHHHHHHHHHhC
Q 035847 337 YFEMMKKEY-NMEPA--MEQYCCMVDLLAR--AGQFDDTLNFMKKM 377 (523)
Q Consensus 337 ~~~~m~~~~-g~~p~--~~ty~~li~~~~~--~g~~~~A~~~~~~m 377 (523)
.|++..... ++..+ ......||.++-. ...+++|..-++.+
T Consensus 218 ~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 218 ALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 999887431 23223 3445566666642 44566666666665
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.77 E-value=0.45 Score=44.01 Aligned_cols=119 Identities=11% Similarity=-0.027 Sum_probs=65.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.-...|++.|+.++|.+.......-+...-|.-|. .+..+.+-|...++.|++- -+..|.+-|
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~--------------lk~~r~d~A~~~lk~mq~i---ded~tLtQL 175 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQIL--------------LKMHRFDLAEKELKKMQQI---DEDATLTQL 175 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHcc---chHHHHHHH
Confidence 33445677777777777777643334443333322 4556677777777777663 245566655
Q ss_pred HHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 269 LAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 269 l~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
-+++.+ .+.+..|.-+|++|-+. ..|+..+-|-+..++...|++ ++|..++++...
T Consensus 176 A~awv~la~ggek~qdAfyifeE~s~k-----------------~~~T~~llnG~Av~~l~~~~~--eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAFYIFEELSEK-----------------TPPTPLLLNGQAVCHLQLGRY--EEAESLLEEALD 235 (299)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHhcc-----------------cCCChHHHccHHHHHHHhcCH--HHHHHHHHHHHh
Confidence 555443 23445555555555431 133444455555555555555 555555555554
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.73 E-value=0.13 Score=41.75 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=68.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC--CCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD--DLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
++-.+...+.+.|++++|...|++ .... +.......+..+...+.+.|+++.|...|+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 64 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQA-------------------FLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLA 64 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455667778888999999999988 3220 1111234566688889999999999999987
Q ss_pred CCC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 210 IKQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 210 m~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
... |+ ..++..+.. .+.+.|+.++|...|++.....
T Consensus 65 ~~~~~p~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 65 VVKKYPKSPKAPDALLKLGM------------SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHCCCCCcccHHHHHHHH------------HHHHhCChHHHHHHHHHHHHHC
Confidence 653 43 235666666 7778899999999999988763
No 158
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.24 Score=45.59 Aligned_cols=137 Identities=19% Similarity=0.209 Sum_probs=95.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc---
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK--- 177 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~--- 177 (523)
++...-..+.+.....++..+++..-+-++.....|.++-.+.|+.+.|...|++ +++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~-------------------vek~~~ 243 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD-------------------VEKVTQ 243 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH-------------------HHHHHh
Confidence 4444555677888888999998876566788888999999999999999999997 322
Q ss_pred --CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 178 --DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 178 --~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.++.-+..+.-..-..|.-.++...|.+.|+++.. .|.+.-|.--- ...-.|+..+|++..+.
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL------------cllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL------------CLLYLGKLKDALKQLEA 311 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH------------HHHHHHHHHHHHHHHHH
Confidence 13333333444444456667889999999988775 34444444322 23346889999999999
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 035847 253 MIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 253 M~~~g~~p~~~t~~~ll~ 270 (523)
|++. .|...+-++++-
T Consensus 312 ~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 312 MVQQ--DPRHYLHESVLF 327 (366)
T ss_pred Hhcc--CCccchhhhHHH
Confidence 9884 566666555543
No 159
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.66 E-value=3.7 Score=43.71 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH--HHHhC-CCCCCCC-----
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN--FMKKM-PFEPSSA----- 384 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~--~~~~m-~~~p~~~----- 384 (523)
..|.-.=..+-..|.. ++|.+.|.... -+.|+ ..+-+++-.++.+.|+..-|.. ++.++ .+.|+..
T Consensus 685 ~~~~~~G~~~~~~~~~--~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQL--EEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred HHHHHhhHHHHHHHhh--HHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3444444556667777 88888887664 45677 5677788888888888777776 66664 5667666
Q ss_pred ------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 ------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..|+.+.|...+...+++++.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 788888888888888888887775
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.62 E-value=0.16 Score=41.09 Aligned_cols=84 Identities=8% Similarity=0.019 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCC--CCceeHhHHH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFE--GNACVKRPVL 137 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li 137 (523)
+|-.+...+.+.|++++|.+.|..+.... +...+...|+++.|.+.++.+....-. ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 45566778888999999999999887542 667778889999999999998875311 1244677778
Q ss_pred HHHHhcCCHHHHHHHhhh
Q 035847 138 DMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~ 155 (523)
.++.+.|+.++|...+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHHhCChHHHHHHHHH
Confidence 889999999999999998
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.58 E-value=0.038 Score=40.00 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=47.5
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSW 218 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~ 218 (523)
.+.|++++|..+|++ ++.. .+-+..++-.+..+|.+.|++++|..+++.+.. |+-..|
T Consensus 2 l~~~~~~~A~~~~~~------------------~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEK------------------ALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHH------------------HHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHH------------------HHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 467888888888888 2332 233677888999999999999999999999874 665666
Q ss_pred HHHHH
Q 035847 219 NAMLA 223 (523)
Q Consensus 219 ~~li~ 223 (523)
..++.
T Consensus 62 ~~l~a 66 (68)
T PF14559_consen 62 QQLLA 66 (68)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 162
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.38 Score=49.12 Aligned_cols=223 Identities=11% Similarity=0.065 Sum_probs=147.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLV 186 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~ 186 (523)
.|++.+|.-.|+..++.. +-+...|--|-..-...++-..|...+.+ .+ .+.| |..+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~r------------------cl---~LdP~Nlea 355 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRR------------------CL---ELDPTNLEA 355 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHH------------------HH---hcCCccHHH
Confidence 356666666666666552 33566777776777777777777777766 12 3455 4667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHH
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISL 265 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~ 265 (523)
.-+|--.|...|.-..|...|+.-.. +...|--+..+ ...+.++.=+.+.....+.+..++|-++.. .+.++|....
T Consensus 356 LmaLAVSytNeg~q~~Al~~L~~Wi~-~~p~y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 356 LMALAVSYTNEGLQNQALKMLDKWIR-NKPKYVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH-hCccchhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHH
Confidence 77788889999999999998886421 00000000000 000000000044455566778888888865 5545666666
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY 345 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~ 345 (523)
..|---|--.|.+++|...|+..+.- . +-|-..||-|=..++...+. ++|+.-|.+..
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v--~---------------Pnd~~lWNRLGAtLAN~~~s--~EAIsAY~rAL--- 491 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQV--K---------------PNDYLLWNRLGATLANGNRS--EEAISAYNRAL--- 491 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhc--C---------------CchHHHHHHhhHHhcCCccc--HHHHHHHHHHH---
Confidence 66666677789999999999888752 1 23677899999999999999 99999999887
Q ss_pred CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 346 NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 346 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.++|+ +.....|--.|...|.+++|.+.+-+
T Consensus 492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 46888 44555566688889999999887644
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.42 E-value=2.7 Score=40.42 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=73.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhcCCc-hHHHHhHHHhhhCCCCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIHGYVLRHHIQL-STGVGIALISIQGLGTGS 313 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~p~~ 313 (523)
.|.+.|++..|-+++.++-+ .|-.. |+++.|.+.+....+.--.. .... -.
T Consensus 103 ~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~------------a~ 155 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHS------------AA 155 (282)
T ss_dssp HHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHH------------HH
T ss_pred HHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhh------------HH
Confidence 77788888888777766543 45555 78888888887776531110 1100 12
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC----CccCHh-HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN----MEPAME-QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g----~~p~~~-ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
.++..+...+.+.|++ ++|.++|++.....- .+++.. .|-..+-.+...|+...|.+.+++. ...|.-
T Consensus 156 ~~~~~~A~l~~~l~~y--~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 156 ECLLKAADLYARLGRY--EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHTT-H--HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3566778889999999 999999999876421 122232 3334444666789999999999985 344543
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.37 E-value=0.12 Score=44.22 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
++..+...|+.+.+.++...++... +.|...|..+|.+|...|+...|.++|++ +...+.+..|+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~--------------~~~~l~~elg~ 132 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYER--------------YRRRLREELGI 132 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHH--------------HHHHHHHHHS-
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH--------------HHHHHHHHhCc
Confidence 5556667888999999888888764 55788999999999999999999999998 22222323388
Q ss_pred CCchhHH
Q 035847 181 ESDLLVN 187 (523)
Q Consensus 181 ~~d~~~~ 187 (523)
.|+..+-
T Consensus 133 ~Ps~~~~ 139 (146)
T PF03704_consen 133 EPSPETR 139 (146)
T ss_dssp ---HHHH
T ss_pred CcCHHHH
Confidence 8876653
No 165
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.27 E-value=0.088 Score=43.60 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
|..++.++|.++++.|+++....+.+.. |+.=+. +-...+. --......|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~-------WgI~~~------------~~~~~~~---------~~~~spl~Pt~ 52 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV-------WGIDVN------------GKKKEGD---------YPPSSPLYPTS 52 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh-------cCCCCC------------CccccCc---------cCCCCCCCCCH
Confidence 4457778888888888888887777643 222222 1111111 11124577888
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHH-hcCCchHHHHhHHH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLR-HHIQLSTGVGIALI 304 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~-~g~~~~~~~~~~li 304 (523)
.+..+++.+++..+++..|.++.+...+ .+++.+..+|..|+
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888888888888888888888877755 45555444444443
No 166
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.17 E-value=0.051 Score=39.34 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 109 KDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
|+++.|.+++..+.+.. +-+..++-.+...|.+.|++++|..++++
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444331 34777888899999999999999999998
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.81 E-value=0.23 Score=49.46 Aligned_cols=101 Identities=8% Similarity=0.041 Sum_probs=75.7
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-H 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~ 214 (523)
..+...|++++|...|++ +++. -.-+...|..+-.+|.+.|++++|...++...+ | +
T Consensus 10 ~~a~~~~~~~~Ai~~~~~------------------Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~ 69 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQ------------------AIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69 (356)
T ss_pred HHHHHcCCHHHHHHHHHH------------------HHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 445567888888888887 2322 223566888888999999999999999998753 4 4
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 272 (523)
...|..+-. +|.+.|++++|+..|++..+ +.|+...+...+.-|
T Consensus 70 ~~a~~~lg~------------~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 70 AKAYLRKGT------------ACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHH------------HHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 557777777 88899999999999999887 457666666555444
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.71 E-value=6.5 Score=41.16 Aligned_cols=98 Identities=9% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCHHHHH--HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc-hHHHHHHHHHhcCCCchHHHH
Q 035847 259 QPNTISLS--GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF-VWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 259 ~p~~~t~~--~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~-~~n~li~~~~~~g~~~~~~a~ 335 (523)
+|+...|+ .+...+-+.|+++.|...++..+.+ . |+.+ -|-.=-..+...|.+ ++|.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--T----------------PTliEly~~KaRI~kH~G~l--~eAa 425 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--T----------------PTLIELYLVKARIFKHAGLL--DEAA 425 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--C----------------chHHHHHHHHHHHHHhcCCh--HHHH
Confidence 45554444 5667788899999999999888763 1 2211 233444778889999 9999
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
.++++.++. . .||...=+--..-..|+.+.++|.++.....
T Consensus 426 ~~l~ea~el-D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 426 AWLDEAQEL-D-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHhc-c-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 999988764 2 4554333344455568899999999877764
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.54 E-value=0.1 Score=39.76 Aligned_cols=80 Identities=18% Similarity=0.110 Sum_probs=53.3
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh-hhHHH
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL-VSWNA 220 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~-~t~~~ 220 (523)
.|+++.|..+|++ +.......++...+-.+-.+|.+.|+.++|..+++.... ++. ...-.
T Consensus 2 ~~~y~~Ai~~~~k------------------~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l 63 (84)
T PF12895_consen 2 QGNYENAIKYYEK------------------LLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYL 63 (84)
T ss_dssp TT-HHHHHHHHHH------------------HHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHH
T ss_pred CccHHHHHHHHHH------------------HHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHH
Confidence 4678888888887 232211122455566689999999999999999988321 222 22223
Q ss_pred HHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 221 MLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 221 li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
+-. ++.+.|++++|++.|++
T Consensus 64 ~a~------------~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 64 LAR------------CLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHH------------HHHHTT-HHHHHHHHHH
T ss_pred HHH------------HHHHhCCHHHHHHHHhc
Confidence 334 78899999999999875
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.42 E-value=4.3 Score=42.37 Aligned_cols=183 Identities=9% Similarity=0.017 Sum_probs=95.6
Q ss_pred HHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
+-++|.-..|+++|.+|+--+...-+...|+.++-+.+..+-.+ ...|+.-=.+.-.++..+|+.++|..+.-+
T Consensus 655 Fk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d---- 728 (1081)
T KOG1538|consen 655 FKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGD---- 728 (1081)
T ss_pred HHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhc----
Confidence 34445555555555554433344444445555554444433222 222333334455666778888888776544
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhc
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
.+=++....+-..+- ..+..+.-.+-.-+-+...+.-|-++|..|.+ -.+++. .+..
T Consensus 729 -~gW~d~lidI~rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVq------------lHve 785 (1081)
T KOG1538|consen 729 -HGWVDMLIDIARKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQ------------LHVE 785 (1081)
T ss_pred -ccHHHHHHHHHhhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhh------------heee
Confidence 121222222221111 11233333333334445566777777777653 123555 6667
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTI-----------SLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
.+++.+|+.+-+...+ ..||.+ -|.-.-.||-+.|+-.+|.++++++....+
T Consensus 786 ~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred cccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 7777777777666543 333332 233344677788888888888888876443
No 171
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.31 E-value=5.4 Score=38.52 Aligned_cols=255 Identities=14% Similarity=0.128 Sum_probs=142.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH---HHHHhcCChHHHHHHHhcCC-
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM---DFYAKCRYLKVAHCKFSKIK- 211 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li---~~~~k~g~~~~A~~vf~~m~- 211 (523)
|-+.+...|++.+|+.-|.. -++-|+..|-++. ..|...|+-..|..=|+...
T Consensus 44 lGk~lla~~Q~sDALt~yHa-----------------------Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHA-----------------------AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHH-----------------------HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 34445556777777777776 3444555555543 34555666655555554443
Q ss_pred -CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 212 -QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 212 -~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+||-.. +=| +.|. .+.+.|.+++|..=|+...+.. |+.- ....+..+....++-..+..+++.
T Consensus 101 lKpDF~~--ARi----QRg~-----vllK~Gele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 101 LKPDFMA--ARI----QRGV-----VLLKQGELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred cCccHHH--HHH----Hhch-----hhhhcccHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHHHHHHHH
Confidence 355321 111 1111 4457899999999998887753 3221 122333333333333333333333
Q ss_pred hcCCchHHHHhHHHhhh-CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHH
Q 035847 291 HHIQLSTGVGIALISIQ-GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y-~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 368 (523)
.--.-|....-.+|+.. .+ .-|...|-.=-.+|...|.+ ..|+.=++...+. -.-++.++--+-..+-..|+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~--k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP--KKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH--HHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHH
Confidence 21111211111111111 34 34666677778899999998 8887655555432 1334566666778888999999
Q ss_pred HHHHHHHh-CCCCCCCC-----------------------CCCCHHHHHHHHHHHHhhCCC-CCcceeEE---EecCCCC
Q 035847 369 DTLNFMKK-MPFEPSSA-----------------------EPCNPDIAEHAARHLFELEPL-SSGKVHSF---IAGDTSH 420 (523)
Q Consensus 369 ~A~~~~~~-m~~~p~~~-----------------------~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~---~~~~~~~ 420 (523)
.++..+++ +.+.||.. ..+..-.+....+++++.+|. .+..++.| ...+...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 99999888 56888876 122222333456777777787 34444444 4455667
Q ss_pred chHHHHHHHHHHH
Q 035847 421 SLVHKISEKLMRL 433 (523)
Q Consensus 421 ~~~~~~~~~l~~l 433 (523)
++..++...-.++
T Consensus 321 ~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 321 EQFGEAIQQCKEV 333 (504)
T ss_pred CCHHHHHHHHHHH
Confidence 7777776444333
No 172
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.30 E-value=5.4 Score=38.50 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=107.7
Q ss_pred HHHhcCCchHHHHHHHHhhHcc------------------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHh
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG------------------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKR 134 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 134 (523)
.+.+.|.++.|..=|+...... .+..+...||...+......+++.- +-|...|-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 4567899999999888877654 4555566788888888888887763 45777788
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-- 212 (523)
.--.+|...|++..|..=+.. ... --.-++...--+-..+-..|+.+.+....++-.+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~-------------------ask-Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQ-------------------ASK-LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHH-------------------HHh-ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 888888888888888766555 211 1123455555666777788888888877776543
Q ss_pred CChhh----HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH---HHHHhhccCChhHHHHHH
Q 035847 213 KHLVS----WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG---VLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 213 ~~~~t----~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~---ll~a~~~~g~~~~a~~i~ 285 (523)
||.-. |-.|=. ..+ ..+.+......+++.++++-.+...+....-..++|+. +-.++...+.+.+|.+.-
T Consensus 254 pdHK~Cf~~YKklkK-v~K--~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKK-VVK--SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred cchhhHHHHHHHHHH-HHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 54432 111100 000 00001133445566666666655554333222334432 222223345555555554
Q ss_pred HHHH
Q 035847 286 GYVL 289 (523)
Q Consensus 286 ~~~~ 289 (523)
.+++
T Consensus 331 ~evL 334 (504)
T KOG0624|consen 331 KEVL 334 (504)
T ss_pred HHHH
Confidence 4443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.26 E-value=0.61 Score=41.06 Aligned_cols=64 Identities=6% Similarity=0.019 Sum_probs=43.8
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC-CcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER-NVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
..|..+-..+...|++++|...+.+..+.... .+ ....|..+-..+.+.|++++|+..+.+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED------------PNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666667788888888888887765321 11 135677777778888888888888776554
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.16 E-value=0.09 Score=40.03 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHhcC-CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 109 KDHRVGKDVYDYMISIKF-EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
|+++.|..+++.+.+..- .|+...+-.+-.+|.+.|++++|..++++ .+. +. .+....
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-------------------~~~-~~-~~~~~~ 61 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-------------------LKL-DP-SNPDIH 61 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-------------------HTH-HH-CHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------hCC-CC-CCHHHH
Confidence 344444444444444322 12344455588999999999999999976 333 11 122333
Q ss_pred HHHHHHHHhcCChHHHHHHHhc
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~ 209 (523)
-.+-.+|.+.|+.++|..+|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4557888999999999999874
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.10 E-value=0.66 Score=40.59 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=61.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCC--CceeHhHHHHHHHhcCCHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG--NACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~ 147 (523)
...|..+...+...|++++|+..|++..... -.| ...++..+-..|.+.|+.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-------------------------~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-------------------------IDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------------------------ccchhhHHHHHHHHHHHHHcCCHH
Confidence 4566667777777788888888877654421 111 2347888889999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH-------hcCChHHHHHHHh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA-------KCRYLKVAHCKFS 208 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~-------k~g~~~~A~~vf~ 208 (523)
+|...+++ ... -.+.....++.+...|. +.|+.+.|...++
T Consensus 90 eA~~~~~~-------------------Al~-~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQ-------------------ALE-RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHH-------------------HHH-hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99999998 211 11122344555555666 7788775555544
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.07 E-value=0.62 Score=40.98 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=45.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC--ceeHhHHHHHHHhcCCH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN--ACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~ 146 (523)
+...|..+-..+...|++++|+..|++..... ..+. ...+..+...|.+.|++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~la~~~~~~g~~ 88 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-------------------------EDPNDRSYILYNMGIIYASNGEH 88 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-------------------------hccchHHHHHHHHHHHHHHcCCH
Confidence 34566677777777888888888887765421 1111 35678888899999999
Q ss_pred HHHHHHhhh
Q 035847 147 EMASGEFEE 155 (523)
Q Consensus 147 ~~A~~~f~~ 155 (523)
+.|...+++
T Consensus 89 ~~A~~~~~~ 97 (172)
T PRK02603 89 DKALEYYHQ 97 (172)
T ss_pred HHHHHHHHH
Confidence 999999988
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.00 E-value=1.5 Score=38.40 Aligned_cols=115 Identities=9% Similarity=0.061 Sum_probs=75.7
Q ss_pred chHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 243 GETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 243 ~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
+..+...+..+. ..+..--...|..+...+...|++++|...+.........+.. ...+|..+-.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~--------------~~~~~~~lg~ 80 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD--------------RSYILYNIGL 80 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh--------------hHHHHHHHHH
Confidence 334444455553 2322223455666666777789999999999988764321110 2247888889
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHH-------hhCCHHHHHHHHHh
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLA-------RAGQFDDTLNFMKK 376 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~-------~~g~~~~A~~~~~~ 376 (523)
.|...|+. ++|...++..... .|+ ..++..+...+. +.|++++|...+++
T Consensus 81 ~~~~~g~~--~eA~~~~~~Al~~---~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 81 IHTSNGEH--TKALEYYFQALER---NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHcCCH--HHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99999999 9999999888754 344 456666666666 67777766655544
No 178
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.94 E-value=0.47 Score=47.28 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=64.0
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+...|+++.|...+.+.++.. ..+...|..+-.+|.+.|++++|+..+++.....
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--------------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~----------- 66 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--------------PNNAELYADRAQANIKLGNFTEAVADANKAIELD----------- 66 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 345678888888888887754 2356677777778888888888888887776533
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...|..+-.+|.+.|++++|...|++
T Consensus 67 ---------------P~~~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 67 ---------------PSLAKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred ---------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33566778888888899999999999988
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.90 E-value=0.57 Score=49.04 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
.+..+|.++--.+...|++++|...|++.. .|+..+|..+-. .+...|++++|.+.|++-.. +.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~------------~~~~~G~~~eA~~~~~~A~~--L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGK------------VYELKGDNRLAADAYSTAFN--LR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHh--cC
Confidence 345677777666667899999999999875 477778888888 88899999999999998876 45
Q ss_pred CCHHHHH
Q 035847 260 PNTISLS 266 (523)
Q Consensus 260 p~~~t~~ 266 (523)
|...||.
T Consensus 484 P~~pt~~ 490 (517)
T PRK10153 484 PGENTLY 490 (517)
T ss_pred CCCchHH
Confidence 6555653
No 180
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.87 E-value=1.6 Score=36.01 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=50.6
Q ss_pred HHHhhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 221 MLAGYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 221 li~~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
+|.+|++.+...+ +....+.|+-+.-.++++++.. +-+|++.....+-.||.+.|+..++.+++...-+.|++
T Consensus 75 Vi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444554444444 4578889999999999999876 34688888889999999999999999999999998874
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.54 E-value=12 Score=39.72 Aligned_cols=263 Identities=12% Similarity=0.031 Sum_probs=153.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
...|+.+-..++....+++|.+.|..-.... .+.++.+..++++-+.+-.. ++-|....-.+-+++...|.-+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~q 870 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQ 870 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHH
Confidence 3578888888888888888888886644322 66666666666655544443 45566777788899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHh--hh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAG--YA 226 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~--~~ 226 (523)
|.+.|-+ .-.|. +-++.|...+.+.+|.++-+...-|.+.|.-+--.+ +.
T Consensus 871 AV~a~Lr-----------------------~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~ 922 (1189)
T KOG2041|consen 871 AVEAYLR-----------------------RSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLA 922 (1189)
T ss_pred HHHHHHh-----------------------ccCcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 9998866 22232 445777888889999999888776766543221111 22
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHh----cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHH-H-
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQ----TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV-G- 300 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~-~- 300 (523)
.....+.|..+.++|+.-+|-+++..|.+ .+.+|-..-=.-+|.|..-.. ..++.+-.+...++|...+... .
T Consensus 923 ~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~-h~~~ik~~~~~~~~g~~~dat~lle 1001 (1189)
T KOG2041|consen 923 DANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN-HRQTIKELRKIDKHGFLEDATDLLE 1001 (1189)
T ss_pred hcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhcCcchhhhhhhh
Confidence 33344447788899999999999988865 455554433333333332111 1111111222223343322211 0
Q ss_pred hHHHhhh-CC----CC--CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHH
Q 035847 301 IALISIQ-GL----GT--GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFD 368 (523)
Q Consensus 301 ~~li~~y-~~----~p--~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 368 (523)
+.++..- .+ -. ....|-.|..--...|.+ +.|++.--.+.+-..+-|-.+.|+.+.-+-|....+.
T Consensus 1002 s~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v--~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFG 1074 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRV--KDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFG 1074 (1189)
T ss_pred hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchH--HHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhh
Confidence 0000000 11 11 222333444444556788 8887765555442267888888887766555544443
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.51 E-value=0.67 Score=37.98 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=57.6
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCC--ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGN--ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES 182 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 182 (523)
+-..|+.++|..+|+.....|+..+ ...+-.+-+.|...|++++|..+|++ ... . .|
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~-------------------~~~-~-~p 69 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEE-------------------ALE-E-FP 69 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-H-CC
Confidence 3345666666666666666665543 23444566777888888888888888 222 1 12
Q ss_pred c----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 183 D----LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 183 d----~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+ ..+...+--++...|+.++|...+-....++...|.--|.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~ 114 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIR 114 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1122222235567788888888776544444445555555
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.49 E-value=6.8 Score=39.33 Aligned_cols=141 Identities=8% Similarity=0.086 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhhH
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSW 218 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-~~~t~ 218 (523)
-+.+++..|.++|.+ +....-.. .... ..+..+-+|++|. ..+++..........+. ....|
T Consensus 17 qkq~~~~esEkifsk--------------I~~e~~~~-~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~ 80 (549)
T PF07079_consen 17 QKQKKFQESEKIFSK--------------IYDEKESS-PFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAY 80 (549)
T ss_pred HHHhhhhHHHHHHHH--------------HHHHhhcc-hHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchH
Confidence 466788888888877 11111111 0111 1344566778876 35566666665555431 23456
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CCCC------------CHHHHHHHHHHhhccCChhHHHHH
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DMQP------------NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~~p------------~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
-.+..++ -+.+.+++++|++.|..-... +-+| |..-=+.....+...|.+.+|+.+
T Consensus 81 l~LF~~L----------~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~i 150 (549)
T PF07079_consen 81 LPLFKAL----------VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAI 150 (549)
T ss_pred HHHHHHH----------HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 6666644 234678888888888776654 3332 222223455667788999999998
Q ss_pred HHHHHHhcCC----chHHHHhHHHhhh
Q 035847 285 HGYVLRHHIQ----LSTGVGIALISIQ 307 (523)
Q Consensus 285 ~~~~~~~g~~----~~~~~~~~li~~y 307 (523)
++.+...=++ .+..+|+.++-+|
T Consensus 151 Ln~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 151 LNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 8888765444 7788888766665
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.48 E-value=0.88 Score=47.16 Aligned_cols=199 Identities=14% Similarity=0.072 Sum_probs=106.1
Q ss_pred HHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHH-----HHHHHHhcC
Q 035847 10 LQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS-----MMGMYNVLG 84 (523)
Q Consensus 10 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~-----li~~~~~~g 84 (523)
+++|+++|-.|+...... .|+-.|.+.+|.++|. +.|.... -...|+- ...-|...|
T Consensus 623 L~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk---~~G~enR------------AlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFK---RSGHENR------------ALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHH---HcCchhh------------HHHHHHHHHHHHHHHHHhhcC
Confidence 567778888898865443 4556677888777764 4554211 1112221 123344444
Q ss_pred CchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHH------HHHHHhcCC---CCceeHhHHHHHHHhcCCHH
Q 035847 85 YYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVY------DYMISIKFE---GNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 85 ~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~------~~m~~~g~~---p~~~~~~~li~~~~~~g~~~ 147 (523)
..++-..+.++--+.- ....+.+.|+.+.|..+. +.++..+-. .+..+.-.+-.-+-+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 4444443332211100 223333344444433321 111222211 12233333333334455566
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHh
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAG 224 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~ 224 (523)
-|-++|.+ +.. -..++++....+++++|.++-+..++ ||+. .|.-.+
T Consensus 765 LAaeIF~k-------------------~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwL-- 814 (1081)
T KOG1538|consen 765 LAAEIFLK-------------------MGD---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWL-- 814 (1081)
T ss_pred hHHHHHHH-------------------hcc---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHh--
Confidence 77777766 322 24677888999999999999999886 6664 232222
Q ss_pred hhhcCCccc-cchhhccCCchHHHHHHHHHHhcC
Q 035847 225 YALGGFREE-ITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 225 ~~~~g~~~~-i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+++.++++ =++|.++|+-.+|..+++++....
T Consensus 815 -AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 815 -AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred -hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 22333322 338889999999999999886543
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.40 E-value=0.67 Score=42.10 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=32.4
Q ss_pred hhhccCCchHHHHHHHHHHhc--CCCCCHHHHHHHHHHhhccCChhHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQT--DMQPNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
-|.+.|.+..|..-|+.+.+. +..........++.++-+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 778899999999999998875 22222345567788888888877444
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.19 E-value=1.5 Score=37.52 Aligned_cols=80 Identities=14% Similarity=0.144 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR 145 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 145 (523)
.+-.-+.+.|++++|..+|+-...-+ +-..|-..|++++|.+.|....... +-|+..+-.+-.+|.+.|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 34445668899999999999887655 5556667899999999999998876 3567777788889999999
Q ss_pred HHHHHHHhhh
Q 035847 146 MEMASGEFEE 155 (523)
Q Consensus 146 ~~~A~~~f~~ 155 (523)
.+.|.+-|+.
T Consensus 119 ~~~A~~aF~~ 128 (157)
T PRK15363 119 VCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 187
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.96 E-value=16 Score=39.86 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=75.1
Q ss_pred hhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH
Q 035847 174 HLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250 (523)
Q Consensus 174 ~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf 250 (523)
.+++.+-.+-..++.+|+ ..|.|+.++|..+++.... .|..|-.++-. .|.+.|+.++|..+|
T Consensus 35 llkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~------------~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 35 LLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQN------------VYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHH------------HHHHHhhhhHHHHHH
Confidence 455534444445555554 3578999999999887753 47778888888 889999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 251 SRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 251 ~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
++..+ .-|+..-...+..+|.+.+++.+-.++--++-+
T Consensus 101 e~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 101 ERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 457788888889999998888666665444433
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.85 E-value=7.3 Score=36.43 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH---HHHHHHHHhcCChHHHHHHHhcCCC-
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN---NSLMDFYAKCRYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~---~~li~~~~k~g~~~~A~~vf~~m~~- 212 (523)
...+.+.|++++|...|++ +.. ..+-+.... --+..+|-+.++.++|...|++..+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~-------------------l~~-~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEA-------------------LDN-RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344567888999988888 444 111122222 2456778889999999988887653
Q ss_pred -CC--hhhHHHHHHhhhhcCCccc-cchhhc----cCC---chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHH
Q 035847 213 -KH--LVSWNAMLAGYALGGFREE-ITGFTQ----YGD---GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLG 281 (523)
Q Consensus 213 -~~--~~t~~~li~~~~~~g~~~~-i~~~~~----~g~---~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a 281 (523)
|+ -+.|--.+.|++....... +..+.. ..+ ..+|+..|+++.+ -|-...-..+|
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A 163 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDA 163 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHH
Confidence 22 2344444442220000000 000000 011 1234444444443 33333334455
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH
Q 035847 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL 360 (523)
Q Consensus 282 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~ 360 (523)
.+.+..+...=-. .- -.+..-|-+.|.. .-|..-|+.+.+.|.-.|. .+....|+.+
T Consensus 164 ~~rl~~l~~~la~-------------------~e-~~ia~~Y~~~~~y--~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a 221 (243)
T PRK10866 164 TKRLVFLKDRLAK-------------------YE-LSVAEYYTKRGAY--VAVVNRVEQMLRDYPDTQATRDALPLMENA 221 (243)
T ss_pred HHHHHHHHHHHHH-------------------HH-HHHHHHHHHcCch--HHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 4433333221000 00 1244568889999 8999999999988744444 5677789999
Q ss_pred HHhhCCHHHHHHHHHhC
Q 035847 361 LARAGQFDDTLNFMKKM 377 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~m 377 (523)
|...|..++|.+.....
T Consensus 222 y~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 222 YRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHcCChHHHHHHHHHH
Confidence 99999999998877654
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.67 E-value=0.27 Score=41.87 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----c
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-----T 256 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-----~ 256 (523)
.+...++..+...|+.++|.++.+.+.. | |...|-.+|. +|...|+..+|++.|+.+.. -
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~------------~~~~~g~~~~A~~~Y~~~~~~l~~el 130 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMR------------ALAAQGRRAEALRVYERYRRRLREEL 130 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHH------------HHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3566778888899999999999998764 4 6679999999 99999999999999998754 4
Q ss_pred CCCCCHHHHH
Q 035847 257 DMQPNTISLS 266 (523)
Q Consensus 257 g~~p~~~t~~ 266 (523)
|+.|+..|-.
T Consensus 131 g~~Ps~~~~~ 140 (146)
T PF03704_consen 131 GIEPSPETRA 140 (146)
T ss_dssp S----HHHHH
T ss_pred CcCcCHHHHH
Confidence 8999887643
No 190
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.66 E-value=2.1 Score=42.74 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=74.2
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC-CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD-LESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+.+|..+|+.-.+..-++.|..+|-+ .++.| +.+++.+++++|..|+ .|+...|.++|+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k-------------------~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ife 456 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIK-------------------LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFE 456 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHH-------------------HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHH
Confidence 45566666666666666666666666 44334 4556666666666554 455566666665
Q ss_pred c-CCC-CChhhH-HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHH
Q 035847 209 K-IKQ-KHLVSW-NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 209 ~-m~~-~~~~t~-~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
. |.. ||...| +-.+. -+..-++-+.|-.+|+.-..+ +.-+ ...|..+|+-=..-|++..+..
T Consensus 457 lGl~~f~d~~~y~~kyl~------------fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 457 LGLLKFPDSTLYKEKYLL------------FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHHhCCCchHHHHHHHH------------HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 3 222 444332 12222 333455556666666633321 1112 3456666666566666666655
Q ss_pred HHHHHHHhcCCchHHHHhHHHhhh
Q 035847 284 IHGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 284 i~~~~~~~g~~~~~~~~~~li~~y 307 (523)
+-+.+.. +.|...+...+..+|
T Consensus 524 Le~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 524 LEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHH--HcCcHhHHHHHHHHH
Confidence 5555544 234444444455555
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.65 E-value=12 Score=37.58 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=77.7
Q ss_pred hhHHHHHHHHhhhCCCCCC------cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDEC------TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
+.+|.++|.+.-.+. .-+ .+.-+.+|+++- ..+++.-........+.- | -..|-.+
T Consensus 22 ~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~---------------~-~s~~l~L 83 (549)
T PF07079_consen 22 FQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF---------------G-KSAYLPL 83 (549)
T ss_pred hhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc---------------C-CchHHHH
Confidence 456667776665431 112 223445666664 344555555544444321 1 3344444
Q ss_pred HHHH--HhcCCchHHHHHHHHhhHc--c----------------------HHHHhhccCChHHHHHHHHHHHHhcCC---
Q 035847 77 MGMY--NVLGYYEEIVNLFYLLIDE--G----------------------VYKACSELKDHRVGKDVYDYMISIKFE--- 127 (523)
Q Consensus 77 i~~~--~~~g~~~~A~~l~~~m~~~--g----------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~--- 127 (523)
..++ -+.+.+.+|++.+..-... + ....+...|++.+|+.++++++..=++
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 4443 3567888888888665544 2 567778899999999999988876544
Q ss_pred -CCceeHhHHHHHHHhcC
Q 035847 128 -GNACVKRPVLDMFIKCG 144 (523)
Q Consensus 128 -p~~~~~~~li~~~~~~g 144 (523)
-+..+||.++-+++++=
T Consensus 164 ~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred cccHHHHHHHHHHHhHHH
Confidence 68899999888888763
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.56 E-value=1.2 Score=36.57 Aligned_cols=76 Identities=14% Similarity=0.066 Sum_probs=58.1
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCce----eHhHHHHHHH
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNAC----VKRPVLDMFI 141 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~ 141 (523)
.++-..|+.++|+.+|++-...| +-+.+...|+.++|..+++...... |+.. +...+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 35566799999999999988876 6777889999999999999988652 4422 1122223566
Q ss_pred hcCCHHHHHHHhhh
Q 035847 142 KCGRMEMASGEFEE 155 (523)
Q Consensus 142 ~~g~~~~A~~~f~~ 155 (523)
..|+.++|...+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78999999998877
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.40 E-value=0.39 Score=35.76 Aligned_cols=61 Identities=20% Similarity=0.403 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+|+.+-..|...|+. ++|+.+|++..+. +| -.|+ ..++..+-..+.+.|++++|++++++
T Consensus 6 ~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRY--DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688899999999999 9999999887753 22 1233 57888899999999999999999876
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.04 E-value=0.68 Score=32.97 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
+-..+.+.|++++|...|++ ... ...-+...+..+-..+...|++++|...|++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~-------------------~l~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQ-------------------ALK-QDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHH-------------------HHC-CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567889999999999998 444 233377888999999999999999999998764
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.92 E-value=0.28 Score=35.49 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=47.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC-CHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG-RME 147 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~ 147 (523)
+..+|..+-..+.+.|++++|+..|.+..+.. +.+..+|..+-.+|.+.| +++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------------------------p~~~~~~~~~g~~~~~~~~~~~ 55 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------------------------PNNAEAYYNLGLAYMKLGKDYE 55 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------------------------TTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhCccHH
Confidence 34567777777888888888888887766543 446778888888999999 799
Q ss_pred HHHHHhhh
Q 035847 148 MASGEFEE 155 (523)
Q Consensus 148 ~A~~~f~~ 155 (523)
+|.+.|++
T Consensus 56 ~A~~~~~~ 63 (69)
T PF13414_consen 56 EAIEDFEK 63 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
No 196
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.87 E-value=3.7 Score=35.22 Aligned_cols=90 Identities=9% Similarity=-0.005 Sum_probs=69.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL 265 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 265 (523)
++-.-+...|++++|.++|+-.. .| +..-|-.|-. .+-..|++++|+..|.....-.. -|...+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~------------~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~ 106 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGE------------CCQAQKHWGEAIYAYGRAAQIKI-DAPQAP 106 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHhcCC-CCchHH
Confidence 44455567899999999999875 34 3445666666 66678999999999999887552 355667
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
-.+-.++...|+.+.|++-|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67777888999999999999888763
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.85 E-value=0.31 Score=34.78 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=31.3
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
..|+++.|.+.++.+++.. +-+...+..+-..+.+.|++++|..+|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444432 33667788888889999999999999888
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=91.83 E-value=4.8 Score=42.27 Aligned_cols=141 Identities=7% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCChhhHHHHHHhhhhcCCccccchhhcc---CCchHHHHHHHHHHhcCCCCCH-HHHHHHHHHhhccCC--------hh
Q 035847 212 QKHLVSWNAMLAGYALGGFREEITGFTQY---GDGETALEFFSRMIQTDMQPNT-ISLSGVLAACAQVKG--------FK 279 (523)
Q Consensus 212 ~~~~~t~~~li~~~~~~g~~~~i~~~~~~---g~~~~A~~lf~~M~~~g~~p~~-~t~~~ll~a~~~~g~--------~~ 279 (523)
..|...|...+.|. .|... +...+|..+|++..+ ..||. ..|..+..++..... +.
T Consensus 334 ~~~~~Ay~~~lrg~----------~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 334 PHQGAALTLFYQAH----------HYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred CCCHHHHHHHHHHH----------HHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 35778999999954 33333 337789999999987 45764 344443322221111 11
Q ss_pred HHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHH
Q 035847 280 LGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVD 359 (523)
Q Consensus 280 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~ 359 (523)
.+.+........... ..+...|.++--.....|+. ++|...|++.... .|+...|..+-.
T Consensus 402 ~a~~~~~~a~al~~~---------------~~~~~~~~ala~~~~~~g~~--~~A~~~l~rAl~L---~ps~~a~~~lG~ 461 (517)
T PRK10153 402 ALSTELDNIVALPEL---------------NVLPRIYEILAVQALVKGKT--DEAYQAINKAIDL---EMSWLNYVLLGK 461 (517)
T ss_pred HHHHHHHHhhhcccC---------------cCChHHHHHHHHHHHhcCCH--HHHHHHHHHHHHc---CCCHHHHHHHHH
Confidence 122222211111000 22335677665566677999 9999999998864 689999999999
Q ss_pred HHHhhCCHHHHHHHHHh-CCCCCCCC
Q 035847 360 LLARAGQFDDTLNFMKK-MPFEPSSA 384 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~-m~~~p~~~ 384 (523)
.+...|+.++|.+.+++ +.+.|...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999877 44555443
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.16 E-value=18 Score=36.38 Aligned_cols=112 Identities=13% Similarity=0.174 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhc-CCchHHHHhHHHhhh--------------CC--CCCcchH-HHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQ--------------GL--GTGSFVW-NSLIDM 322 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y--------------~~--~p~~~~~-n~li~~ 322 (523)
-...|...|++--+...++.|+.+|....+.| ..+++++++++|..| |+ .||...| +-.+.-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35667788888889999999999999999998 456777777777666 44 3444444 234444
Q ss_pred HHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 323 ~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+...++- +.|..+|+.-..+ +.-+ ...|..||+-=..-|++..|..+=+.
T Consensus 476 Li~inde--~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 476 LIRINDE--ENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred HHHhCcH--HHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 4555555 6666666644331 2223 35666666666666666555554333
No 200
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.02 E-value=0.62 Score=43.41 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=65.4
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.+.++-....+..|.+.|+..|..+|+.||+.+=|..-... .+|...-..-...-..+..+.+. |+..|+.||-.+-
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~F~HYP~QQ~C~I~vLeq-ME~hGVmPdkE~e 161 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKVFLHYPQQQNCAIKVLEQ-MEWHGVMPDKEIE 161 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHHHhhCchhhhHHHHHHHH-HHHcCCCCchHHH
Confidence 44566666677888889999999999999999877643321 11111000011112223333333 6666999999999
Q ss_pred HHHHHHHHhcCC-hHHHHHHHhcCC
Q 035847 188 NSLMDFYAKCRY-LKVAHCKFSKIK 211 (523)
Q Consensus 188 ~~li~~~~k~g~-~~~A~~vf~~m~ 211 (523)
..||+++++.+. +.+..++.--|+
T Consensus 162 ~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 162 DILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhccccccHHHHHHHHHhhh
Confidence 999999998876 445566655555
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.89 E-value=0.47 Score=35.26 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=48.4
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-CCc-hhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESD-LLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d-~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
.+|+.+-..|...|++++|+..|++ +.++... . |- .|+ ..+++.+-..|.+.|+.++|.+.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~-----------al~~~~~-~---~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEK-----------ALDIEEQ-L---GDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH-----------HHHHHHH-T---TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHH-H---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4678889999999999999999999 2222111 1 21 233 6688899999999999999999987
Q ss_pred c
Q 035847 209 K 209 (523)
Q Consensus 209 ~ 209 (523)
+
T Consensus 71 ~ 71 (78)
T PF13424_consen 71 K 71 (78)
T ss_dssp H
T ss_pred H
Confidence 5
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.87 E-value=30 Score=38.45 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHH
Q 035847 114 GKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLM 191 (523)
Q Consensus 114 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li 191 (523)
+..++..+....+.|+ ...|..|-..|...-+...|.+.|++| . .+. .|...+.+..
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KA-------------------F--eLDatdaeaaaa~a 533 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKA-------------------F--ELDATDAEAAAASA 533 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------h--cCCchhhhhHHHHH
Confidence 3334444444444554 457888999999988999999999882 1 122 2456677778
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHH
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQKHL---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSG 267 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ 267 (523)
+.|++..+++.|..+.-.-.+.+. ..||-.-.|. .|.+.++...|+.-|+.-.+. .| |.-.|..
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~----------yyLea~n~h~aV~~fQsALR~--dPkD~n~W~g 601 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP----------YYLEAHNLHGAVCEFQSALRT--DPKDYNLWLG 601 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc----------cccCccchhhHHHHHHHHhcC--CchhHHHHHH
Confidence 888888888888877443333221 2333333322 556667777777777666543 33 4556777
Q ss_pred HHHHhhccCChhHHHHHHHHHHH
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+..+|.+.|+...|.++|.....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh
Confidence 77777777777777777765543
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.70 E-value=2.1 Score=43.13 Aligned_cols=111 Identities=9% Similarity=-0.103 Sum_probs=73.5
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCce----eHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNAC----VKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g 144 (523)
+...|+.+-.+|.+.|++++|+..|++-.+ +.|+.. +|..+-.+|.+.|
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe---------------------------L~Pd~aeA~~A~yNLAcaya~LG 126 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE---------------------------LNPNPDEAQAAYYNKACCHAYRE 126 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------------hCCCchHHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999988766 357643 5888999999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhcCCh-----HHHHHHHhcCCCC
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKCRYL-----KVAHCKFSKIKQK 213 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~g~~-----~~A~~vf~~m~~~ 213 (523)
+.++|...++++. . .....+..+.....+.| +..-+..++..+.+.|.. ..-.++..+.+.|
T Consensus 127 r~dEAla~LrrAL-e------lsn~~f~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aP 195 (453)
T PLN03098 127 EGKKAADCLRTAL-R------DYNLKFSTILNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAP 195 (453)
T ss_pred CHHHHHHHHHHHH-H------hcchhHHHHHhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhch
Confidence 9999999999931 1 11112222111111111 233667778877777752 2334555555544
No 204
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.52 E-value=3.8 Score=39.51 Aligned_cols=122 Identities=8% Similarity=0.049 Sum_probs=84.1
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccC--CC----ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPK--LN----NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
+++.+.+++.|.+.|++-+.++|-+..-.... .. ....+..+|+.|++...-. ..++-+++.+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL----------Ts~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL----------TSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc----------cCccchhHHHH
Confidence 57888999999999999998888775544433 22 2667899999999875421 14566778888
Q ss_pred HHHHHhcCC----chHHHHHHHHhhHcc------------HHHHhhccCC--hHHHHHHHHHHHHhcCCCCceeHhHH
Q 035847 77 MGMYNVLGY----YEEIVNLFYLLIDEG------------VYKACSELKD--HRVGKDVYDYMISIKFEGNACVKRPV 136 (523)
Q Consensus 77 i~~~~~~g~----~~~A~~l~~~m~~~g------------ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~l 136 (523)
+.. .... .+++..+|+.+...| +|..+..... +..+.++++.+.+.|+++....|..+
T Consensus 148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 766 3333 345677777777766 3333332222 34678899999999998888777754
No 205
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.35 E-value=9.7 Score=31.91 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=53.3
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHH-hhHcc-
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYL-LIDEG- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~g- 100 (523)
.....++..+...+........++.+...+. .+....|.+|..|++.. ..+.++.+.. ...-.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--------------~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~ 72 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS--------------ENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDI 72 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc--------------cchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCH
Confidence 3455677777777788888888888776652 46678999999999864 4455555552 11111
Q ss_pred --HHHHhhccCChHHHHHHHHHH
Q 035847 101 --VYKACSELKDHRVGKDVYDYM 121 (523)
Q Consensus 101 --ll~~~~~~~~~~~a~~~~~~m 121 (523)
+++.|.+.+.++++.-++..+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh
Confidence 566665555555555555443
No 206
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=15 Score=34.04 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=90.1
Q ss_pred CCCCce-eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch---h-HHHHHHHHHHhcCCh
Q 035847 126 FEGNAC-VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL---L-VNNSLMDFYAKCRYL 200 (523)
Q Consensus 126 ~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~---~-~~~~li~~~~k~g~~ 200 (523)
..++.. +|--++-+...+|+.+.|...+++ ++. .+ |.. . .+..++ --.|+.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~-------------------L~~-~f-p~S~RV~~lkam~l---Ea~~~~ 102 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQ-------------------LRD-RF-PGSKRVGKLKAMLL---EATGNY 102 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHH-------------------HHH-hC-CCChhHHHHHHHHH---HHhhch
Confidence 445543 455666777788999999999988 554 33 321 1 222222 235889
Q ss_pred HHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 035847 201 KVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277 (523)
Q Consensus 201 ~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~ 277 (523)
++|.++++.+.+. |.++|---+. ..-..|+.-+|++-+.+..+. +.-|...|--+-.-|...|+
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlA------------ilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLA------------ILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHH------------HHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH
Confidence 9999999988753 4455554444 444567777888888887765 66788999999999999999
Q ss_pred hhHHHHHHHHHHH
Q 035847 278 FKLGKEIHGYVLR 290 (523)
Q Consensus 278 ~~~a~~i~~~~~~ 290 (523)
++.|.-.+++++-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888865
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=17 Score=33.97 Aligned_cols=184 Identities=13% Similarity=0.062 Sum_probs=109.1
Q ss_pred hhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC--C--------hhhHHHHHHhhhhcCCccccchh
Q 035847 168 KEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK--H--------LVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~--~--------~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
+.+|..+.+..|. -++.|+..|.-..-+++-.+.|+.=..| . ...-++++. .+
T Consensus 125 R~lhAe~~~~lgn-----pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~------------~l 187 (366)
T KOG2796|consen 125 RILHAELQQYLGN-----PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMAN------------CL 187 (366)
T ss_pred HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH------------HH
Confidence 3445555544232 3667777776555555555555543221 2 233455555 55
Q ss_pred hccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
.-.|.+.-.+.++++..+..-+-++.....|.+.-.+.|+.+.|...++...+..-..|....+.++. -
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~-----------~ 256 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL-----------M 256 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH-----------h
Confidence 56777888889999999877666788888888888899999999999998877543333322222221 1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
++-..|.-..+. .+|...|.+.... .|. ...-|.=.-.+.-.|+..+|.+.++.| +..|...
T Consensus 257 n~a~i~lg~nn~--a~a~r~~~~i~~~---D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNF--AEAHRFFTEILRM---DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccch--HHHHHHHhhcccc---CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 122233444555 6677777666543 222 222232222233457888888888887 4556555
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.02 E-value=1.6 Score=31.32 Aligned_cols=60 Identities=22% Similarity=0.417 Sum_probs=49.9
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhC-CHHHHHHHHHh
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAG-QFDDTLNFMKK 376 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g-~~~~A~~~~~~ 376 (523)
+..+|..+-..+...|+. ++|+..|++..+. .|+ ...|..+-.++.+.| ++++|++.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~--~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY--EEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH--HHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 345788888899999999 9999999999875 454 678888888899999 79999888765
No 209
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.94 E-value=22 Score=33.99 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=122.0
Q ss_pred ccCChHHHHHHHHHHHHhc--CCCC------ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 107 ELKDHRVGKDVYDYMISIK--FEGN------ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g--~~p~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
+.|+.+.|..++.+....- ..|+ ...||.=.+.+.+..+++.|..+++++ ..+.+.--+..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-----------~~~l~~~~~~~ 73 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-----------YDILEKPGKMD 73 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-----------HHHHHhhhhcc
Confidence 3455555555555554332 2232 124555555555555899999998882 22221101110
Q ss_pred CCCC-----chhHHHHHHHHHHhcCChH---HHHHHHhcCCC--CC-hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 179 DLES-----DLLVNNSLMDFYAKCRYLK---VAHCKFSKIKQ--KH-LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 179 g~~~-----d~~~~~~li~~~~k~g~~~---~A~~vf~~m~~--~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
...| -..+...|+.+|...+..+ +|..+++.+.. |+ ...+-.-|. .+.+.++.+++.
T Consensus 74 ~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~------------il~~~~~~~~~~ 141 (278)
T PF08631_consen 74 KLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLE------------ILLKSFDEEEYE 141 (278)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHH------------HHhccCChhHHH
Confidence 1222 3456778888888888755 45556666642 33 233333444 555578899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHh---hccCChhHHHHHHHHHHHhcCCchHH-HHhH-HHhhh---CCCCCcchHHHH
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAAC---AQVKGFKLGKEIHGYVLRHHIQLSTG-VGIA-LISIQ---GLGTGSFVWNSL 319 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~~g~~~~~~-~~~~-li~~y---~~~p~~~~~n~l 319 (523)
+.+.+|... +.-....+..++... ... ....+...+.+++...+.|... .... ++... ...++..
T Consensus 142 ~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~----- 214 (278)
T PF08631_consen 142 EILMRMIRS-VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLS----- 214 (278)
T ss_pred HHHHHHHHh-cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCcccc-----
Confidence 999999875 222334455544444 332 3456666676766655555443 1111 11100 0000000
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH-------HHhhCCHHHHHHHHH
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL-------LARAGQFDDTLNFMK 375 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~-------~~~~g~~~~A~~~~~ 375 (523)
...++ +...++++...+..+-+.+..+-.++... +-+.+++++|.++++
T Consensus 215 -----~~~~i--~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 215 -----SSEKI--ESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred -----chhHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 01112 45555566444443555555555544433 456888999988876
No 210
>PHA02875 ankyrin repeat protein; Provisional
Probab=88.84 E-value=28 Score=35.40 Aligned_cols=198 Identities=11% Similarity=-0.024 Sum_probs=108.4
Q ss_pred HHHHHhhhCCCCCCcch--HHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC
Q 035847 8 LLLQSMDLTNPDECTVT--YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY 85 (523)
Q Consensus 8 ~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~ 85 (523)
++++.+.+.|..|+... ..+.|..++..|+.+. .+.+.+.|..++. .+...+ +.+...++.|+
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~----------~~~~~~-t~L~~A~~~g~ 80 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDV----------KYPDIE-SELHDAVEEGD 80 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccc----------cCCCcc-cHHHHHHHCCC
Confidence 45667777888776533 3445555667777654 4445556653221 111122 34556667788
Q ss_pred chHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhh
Q 035847 86 YEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 86 ~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.+.+..+++.-. ..| .+...+..|+. ++.+.+.+.|..|+... ..+.+...+..|+.+-+..+++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 877666665321 112 44455555655 45556666777665432 3345566667888887777766
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCCChhh---HHHHHHhhhhcC
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS---WNAMLAGYALGG 229 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t---~~~li~~~~~~g 229 (523)
. |..++.. ...+-+...+..|+.+-+..+++.-..++... .++++.
T Consensus 157 ~-----------------------g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~------ 207 (413)
T PHA02875 157 H-----------------------KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALC------ 207 (413)
T ss_pred c-----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHH------
Confidence 5 3332211 12234455566788888877777655444332 223333
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
..++.|+. ++.+-+.+.|..|+..
T Consensus 208 ------~A~~~~~~----~iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 208 ------YAIENNKI----DIVRLFIKRGADCNIM 231 (413)
T ss_pred ------HHHHcCCH----HHHHHHHHCCcCcchH
Confidence 33455654 3445555677777643
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.64 E-value=3.7 Score=38.85 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
...|+.-+..+.+.|+.++|...|+.+.+ |+. ..+--+-. .|...|++++|...|+.+...-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~------------~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQ------------LNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHC
Confidence 45677777777888999999999998864 543 24444555 7888999999999999998642
Q ss_pred C-CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 258 M-QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 258 ~-~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
. .| ....+-.+...+...|+.+.|..+++.+++.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 11 1233333445666899999999999988874
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=88.42 E-value=1.5 Score=31.99 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=36.2
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+.++++.|.++++.+++.. +.+...+...-.+|.+.|++++|...|+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 444455555555555555542 45777888888999999999999999998
No 213
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.39 E-value=10 Score=38.84 Aligned_cols=133 Identities=14% Similarity=0.080 Sum_probs=94.0
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
..-.+.+++.+-+.|..+.|+.+-.+ |+ .-.+...++|+++.|.++-++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D--------------------------~~-----~rFeLAl~lg~L~~A~~~a~~ 343 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD--------------------------PD-----HRFELALQLGNLDIALEIAKE 343 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS---------------------------HH-----HHHHHHHHCT-HHHHHHHCCC
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC--------------------------hH-----HHhHHHHhcCCHHHHHHHHHh
Confidence 44588999999999999999998766 21 224666789999999998877
Q ss_pred CCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 210 IKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 210 m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
.. +...|..|-. ...+.|+++-|.+.|.+... |..|+--|.-.|+.+.-.++-+...
T Consensus 344 ~~--~~~~W~~Lg~------------~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 344 LD--DPEKWKQLGD------------EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp CS--THHHHHHHHH------------HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred cC--cHHHHHHHHH------------HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 65 5668999999 88899999999999887642 4455556667788877777776666
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
..| -+|....++...|+. ++..+++.+
T Consensus 401 ~~~----------------------~~n~af~~~~~lgd~--~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG----------------------DINIAFQAALLLGDV--EECVDLLIE 427 (443)
T ss_dssp HTT-----------------------HHHHHHHHHHHT-H--HHHHHHHHH
T ss_pred Hcc----------------------CHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 554 356666666777777 666666553
No 214
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.38 E-value=2.7 Score=39.70 Aligned_cols=123 Identities=10% Similarity=0.153 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYG 324 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~ 324 (523)
+...+=++++..|= -..+.+++++|...|...++.. +.|.+-|..=-.+|.
T Consensus 76 e~~~~AE~LK~eGN------------~~m~~~~Y~eAv~kY~~AI~l~-----------------P~nAVyycNRAAAy~ 126 (304)
T KOG0553|consen 76 EDKALAESLKNEGN------------KLMKNKDYQEAVDKYTEAIELD-----------------PTNAVYYCNRAAAYS 126 (304)
T ss_pred hHHHHHHHHHHHHH------------HHHHhhhHHHHHHHHHHHHhcC-----------------CCcchHHHHHHHHHH
Confidence 34455556665552 2446678888888888887621 347788888999999
Q ss_pred hcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCCCCCCHHHHHHHHHHHHhh
Q 035847 325 RCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSAEPCNPDIAEHAARHLFEL 402 (523)
Q Consensus 325 ~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~~~~~~~~~l~~~ 402 (523)
+.|.. +.|.+=-+.-. .+.|. ..+|..|=.+|...|++++|.+.+++ +.+.|+-. .++...++++..+..
T Consensus 127 ~Lg~~--~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne---~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 127 KLGEY--EDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE---SYKSNLKIAEQKLNE 198 (304)
T ss_pred Hhcch--HHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH---HHHHHHHHHHHHhcC
Confidence 99999 88887665554 45666 68999999999999999999999888 56888654 344444555555544
Q ss_pred CC
Q 035847 403 EP 404 (523)
Q Consensus 403 ~~ 404 (523)
.+
T Consensus 199 ~~ 200 (304)
T KOG0553|consen 199 PK 200 (304)
T ss_pred CC
Confidence 33
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=43 Score=36.04 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=37.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.-.+|..+.+-.-..|+++.|..+.+.=.+.+-..... -+..-+..-+.-..+.|+.+-...++-.|..
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lL---------L~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLL---------LKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHH---------hccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44567777766667788888888766544333211111 1333444555555566666655555544443
No 216
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.68 E-value=17 Score=31.63 Aligned_cols=134 Identities=8% Similarity=0.089 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYA 195 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~ 195 (523)
+....+.+.|+.|+...|..+|+.+.+.|++.....++.- ++-+|.......+-.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----------------------~Vi~DSk~lA~~LLs~~ 71 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----------------------HVIPDSKPLACQLLSLG 71 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----------------------cccCCcHHHHHHHHHhH
Confidence 4455556678999999999999999999998888777666 77777665555443333
Q ss_pred hcC--ChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 035847 196 KCR--YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACA 273 (523)
Q Consensus 196 k~g--~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 273 (523)
... -..-|.+++.++.. .+..++. .+...|++-+|+++.+..... +......++.|..
T Consensus 72 ~~~~~~~Ql~lDMLkRL~~----~~~~iie------------vLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~ 131 (167)
T PF07035_consen 72 NQYPPAYQLGLDMLKRLGT----AYEEIIE------------VLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAA 131 (167)
T ss_pred ccChHHHHHHHHHHHHhhh----hHHHHHH------------HHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHH
Confidence 221 13334455555432 4555666 667799999999998875332 2223355777877
Q ss_pred ccCChhHHHHHHHHHHHhc
Q 035847 274 QVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g 292 (523)
+.++...=..++....+.+
T Consensus 132 ~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 132 NSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HcCCHHHHHHHHHHHHHhh
Confidence 8787777777776666543
No 217
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.10 E-value=3.2 Score=42.52 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=87.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
..-.+.+++-+-+.|.++.|+.+-.+-.. -.+...+.|+++.|.++-.. .++...|..|-+...+.|+++-|
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH--RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH--HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHH
Confidence 34478888888889999999998766443 34455667777777776554 34667899999999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGG 229 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g 229 (523)
.+.|.+ .+. +..|+-.|.-.|+.+.-.++-+.-...+ -+|....
T Consensus 367 e~c~~k-------------------~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--~~n~af~------ 410 (443)
T PF04053_consen 367 EECYQK-------------------AKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--DINIAFQ------ 410 (443)
T ss_dssp HHHHHH-------------------CT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHH------
T ss_pred HHHHHh-------------------hcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--CHHHHHH------
Confidence 999888 332 5667777778888877777765543222 1344444
Q ss_pred CccccchhhccCCchHHHHHHHH
Q 035847 230 FREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
++...|+.++..+++.+
T Consensus 411 ------~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 411 ------AALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHT-HHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHHHH
Confidence 44455677666666654
No 218
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.80 E-value=17 Score=30.36 Aligned_cols=16 Identities=13% Similarity=0.488 Sum_probs=10.6
Q ss_pred CCceeHhHHHHHHHhc
Q 035847 128 GNACVKRPVLDMFIKC 143 (523)
Q Consensus 128 p~~~~~~~li~~~~~~ 143 (523)
.+....|.+|..|++.
T Consensus 39 ~~~~~~~~li~ly~~~ 54 (140)
T smart00299 39 ENPALQTKLIELYAKY 54 (140)
T ss_pred cchhHHHHHHHHHHHH
Confidence 4556677777777665
No 219
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.48 E-value=8.2 Score=37.26 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
.++.++++.+++. |+++...+|..+
T Consensus 199 ~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHc-CCccccccccHH
Confidence 3566667777666 777777666544
No 220
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.42 E-value=28 Score=32.40 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=99.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH-HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD-MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
+.-+.-..++.+.|...++.+... + |...=-..|=. .+--.|++++|.++++. +-. .
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~-------------------lL~-d 115 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYES-------------------LLE-D 115 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHH-------------------Hhc-c
Confidence 444555667777777777777655 3 33221112222 23346888888888888 443 2
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
-+-|.++|--=+...-..|+--+|.+-+..-.+ -|...|--+-. -|...|++++|.-.+++|.-
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae------------iY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE------------IYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH------------HHHhHhHHHHHHHHHHHHHH-
Confidence 244666776555555556766666665555443 58889999999 89999999999999999987
Q ss_pred CCCCCHH-HHHHHHHHhhc---cCChhHHHHHHHHHHHh
Q 035847 257 DMQPNTI-SLSGVLAACAQ---VKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 257 g~~p~~~-t~~~ll~a~~~---~g~~~~a~~i~~~~~~~ 291 (523)
+.|... -+..+-+.+.- ..+++.+++.++..++.
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 345443 33344443332 34567788888888774
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.39 E-value=4.8 Score=40.68 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=66.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CCCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
+...++.+-.+|.+.|++++|...|++.. .|+- .+|..+-. +|.+.|+.++|++.|++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAc------------aya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKAC------------CHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh
Confidence 57788999999999999999999998854 3654 35888888 889999999999999998875
Q ss_pred CCCCCHHHHHHHHH--HhhccCChhHHHHHHHHHHHhcC
Q 035847 257 DMQPNTISLSGVLA--ACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 257 g~~p~~~t~~~ll~--a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+ +.. |..+.. .+....+.....++++.+.+.|.
T Consensus 142 s--n~~--f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 142 Y--NLK--FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred c--chh--HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2 111 211111 11122344456666666666654
No 222
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.29 E-value=13 Score=35.39 Aligned_cols=112 Identities=21% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhH
Q 035847 88 EIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHG 167 (523)
Q Consensus 88 ~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~ 167 (523)
+...+=++++.+| .-..+.+++++|.+.|...++.. +-|.+-|..=-.+|++.|.++.|.+=.+.+
T Consensus 76 e~~~~AE~LK~eG--N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~A----------- 141 (304)
T KOG0553|consen 76 EDKALAESLKNEG--NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESA----------- 141 (304)
T ss_pred hHHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHH-----------
Confidence 5777778888877 33456789999999999999863 446777888889999999999998887761
Q ss_pred hhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHH
Q 035847 168 KEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLA 223 (523)
Q Consensus 168 ~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~ 223 (523)
+ .+.|. ...|..|=.+|...|++++|.+-|+.-. +|+-.+|-.=|.
T Consensus 142 -------l---~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 142 -------L---SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred -------H---hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 1 23443 5688899999999999999999998775 477767766555
No 223
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.22 E-value=8.7 Score=30.00 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|-..+|.
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--------------~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--------------WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--------------HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456778999999999999999999999998855 67888888888888888776 35555554
No 224
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.75 E-value=6.2 Score=37.37 Aligned_cols=89 Identities=16% Similarity=0.202 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH----hHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC----
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM----EQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA---- 384 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~---- 384 (523)
..|+..+.-+.+.|+. ++|...|+...+.| |+. ..+--+-..|...|++++|...|+.+- ..|+..
T Consensus 144 ~~Y~~A~~l~~~~~~y--~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 144 TDYNAAIALVQDKSRQ--DDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 3466666655667888 99999999998773 553 456677888899999999999988862 334433
Q ss_pred ----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 ----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
..|+.+.|....+.+++..|...
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56777778788888887777644
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.75 E-value=2.7 Score=30.50 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=42.5
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
..+.+.++++.|..+++.+.... +.+...|...-..+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--------------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34567788888888888888764 236677777778888888888888888877654
No 226
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.68 E-value=5.4 Score=37.84 Aligned_cols=76 Identities=7% Similarity=0.119 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----- 255 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----- 255 (523)
..++..++..+..+|+.+.+...++++.. -|...|..+|. +|.++|+...|+..|+.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~------------~y~~~g~~~~ai~~y~~l~~~~~ed 220 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLME------------AYLVNGRQSAAIRAYRQLKKTLAEE 220 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHH------------HHHHcCCchHHHHHHHHHHHHhhhh
Confidence 45778889999999999999999988764 36678999999 99999999999999998876
Q ss_pred cCCCCCHHHHHHHHHH
Q 035847 256 TDMQPNTISLSGVLAA 271 (523)
Q Consensus 256 ~g~~p~~~t~~~ll~a 271 (523)
.|+.|-..+.......
T Consensus 221 lgi~P~~~~~~~y~~~ 236 (280)
T COG3629 221 LGIDPAPELRALYEEI 236 (280)
T ss_pred cCCCccHHHHHHHHHH
Confidence 5888888887776666
No 227
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.47 E-value=20 Score=30.32 Aligned_cols=100 Identities=16% Similarity=0.227 Sum_probs=70.1
Q ss_pred HHhcCCCCCH--HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 253 MIQTDMQPNT--ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 253 M~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
|++.+..++. ...+++|.-.+.-+++....++++.+.. +.++..+. ..+-.+|++++.+.+...-.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~---------~~~~ssf~~if~SlsnSsSa- 95 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHF--LNTDNIIG---------WLDNSSFHIIFKSLSNSSSA- 95 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhh---------hcccchHHHHHHHHccChHH-
Confidence 4555666665 4467888877777788777777777722 11111000 24667899999999766542
Q ss_pred hHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 331 KNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 331 ~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
+--+..+|+-|++. +.+++..-|.+||.++.+.-
T Consensus 96 K~~~~~Lf~~Lk~~-~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 96 KLTSLTLFNFLKKN-DIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCC
Confidence 15677889999885 89999999999999988763
No 228
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.34 E-value=10 Score=32.03 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=70.0
Q ss_pred hhcCCCCCch--hHHHHHHHHHHhcCChHHHHHHHhcCC---------CCChhhHHHHHHhhhhcCCccccchhhccCC-
Q 035847 175 LKKDDLESDL--LVNNSLMDFYAKCRYLKVAHCKFSKIK---------QKHLVSWNAMLAGYALGGFREEITGFTQYGD- 242 (523)
Q Consensus 175 ~~~~g~~~d~--~~~~~li~~~~k~g~~~~A~~vf~~m~---------~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~- 242 (523)
|+..+..++. ...|+++.-.+.-++......+++.+. ..+-.+|++++. +..+..-
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~------------SlsnSsSa 95 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFK------------SLSNSSSA 95 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHH------------HHccChHH
Confidence 4433555654 356888888888888888888888774 245568999999 7755554
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh
Q 035847 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 278 (523)
---+..+|+-|++.+.+++..-|..+|.+|.+....
T Consensus 96 K~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 96 KLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 345788999999989999999999999999876433
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=83.92 E-value=31 Score=34.36 Aligned_cols=266 Identities=15% Similarity=0.089 Sum_probs=135.3
Q ss_pred HHHhcCCchHHHHHHHHhhHcc-------------HHHHhhccCChHHHHHHHHHH--HHh--cCC-CCceeHhHHHHHH
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG-------------VYKACSELKDHRVGKDVYDYM--ISI--KFE-GNACVKRPVLDMF 140 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g-------------ll~~~~~~~~~~~a~~~~~~m--~~~--g~~-p~~~~~~~li~~~ 140 (523)
-+|+.|+.+..+.+|+...+.| +-.+|.-.+|+..|.+.|..= +.. |-. -..-+...|-+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4678888888888888888777 333344455677777665422 111 100 0111222233333
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC--------------------Ch
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR--------------------YL 200 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g--------------------~~ 200 (523)
--.|.+++|.-.-.+ .++.++++-+++.+. ...| .|-+.|...| .+
T Consensus 106 Kv~G~fdeA~~cc~r-------hLd~areLgDrv~e~------RAlY-NlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFR-------HLDFARELGDRVLES------RALY-NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hhhcccchHHHHHHH-------HhHHHHHHhHHHhhh------HHHh-hhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 344556655544333 455555555554443 1112 1222332222 12
Q ss_pred HHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH----hcCCCC-CHHHHHHHHHHhh
Q 035847 201 KVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI----QTDMQP-NTISLSGVLAACA 273 (523)
Q Consensus 201 ~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~----~~g~~p-~~~t~~~ll~a~~ 273 (523)
+.|.+.|.+-.+ .+.----+.-.+|...|+ .|.-.|+++.|+..-+.-. +-|-+. -...+..+-+++.
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGN-----TyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGN-----TYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCc-----eeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 233333332111 000001112222333333 6777889999987654432 233332 2345666777778
Q ss_pred ccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh----cCCcc
Q 035847 274 QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE----YNMEP 349 (523)
Q Consensus 274 ~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~----~g~~p 349 (523)
-.|.++.|.+.+......-++....+ -...+.-+|-+.|.-...+ +.|+.++.+-..- ....-
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~-----------vEAQscYSLgNtytll~e~--~kAI~Yh~rHLaIAqeL~DriG 313 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRT-----------VEAQSCYSLGNTYTLLKEV--QKAITYHQRHLAIAQELEDRIG 313 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchh-----------HHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 88999999888766543322211110 0112233445555555556 7777766543321 01222
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 350 AMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 350 ~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
....|-+|-.++...|..++|+.+.+.
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356788889999999999999888655
No 230
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.33 E-value=2.1 Score=36.13 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=40.0
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+++.+.+.+..+.....++.+...+-..+....|.++..|++.++.+...++++.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 4555555566666666666666555556788999999999999988999998876
No 231
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.29 E-value=7.4 Score=36.95 Aligned_cols=78 Identities=6% Similarity=0.085 Sum_probs=59.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+++++...++.+.+...++.++... +-|...|..+|.+|.+.|+...|...|++ +.....+..|+
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~--------------l~~~~~edlgi 223 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQ--------------LKKTLAEELGI 223 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHH--------------HHHHhhhhcCC
Confidence 4555566677888888888877663 55888999999999999999999999998 22222334499
Q ss_pred CCchhHHHHHHHH
Q 035847 181 ESDLLVNNSLMDF 193 (523)
Q Consensus 181 ~~d~~~~~~li~~ 193 (523)
.|...+.......
T Consensus 224 ~P~~~~~~~y~~~ 236 (280)
T COG3629 224 DPAPELRALYEEI 236 (280)
T ss_pred CccHHHHHHHHHH
Confidence 9998888776665
No 232
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.52 E-value=26 Score=30.62 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=77.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH-
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD- 138 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 138 (523)
..|-.-+. +++.+..++|+.-|.++.+.| +-......|+...|..-|+++-+..-.|-..-=.+-++
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 467899999999999999887 33445677888889888988876543443321111111
Q ss_pred --HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 139 --MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 139 --~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
.+...|.+++.....+. +...+-..-...-.+|--+--|.|++.+|...|..+-.
T Consensus 139 a~lLvD~gsy~dV~srvep-------------------La~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEP-------------------LAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhccccHHHHHHHhhh-------------------ccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 23456777776666555 33212222333445666666789999999999998754
No 233
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.69 E-value=35 Score=29.75 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=65.8
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHh
Q 035847 246 ALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325 (523)
Q Consensus 246 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~ 325 (523)
-++..+.+.+.|+.|+...|..+++.+.+.|....-.++ +..++-+| ...--..+-.+..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~D----------------Sk~lA~~LLs~~~ 72 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPD----------------SKPLACQLLSLGN 72 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCC----------------cHHHHHHHHHhHc
Confidence 356777888899999999999999999999987655544 33333332 2222222212211
Q ss_pred cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.. ..+.++=-.|.++.+ ..+..++..+...|++-+|.++.++.
T Consensus 73 --~~--~~~~Ql~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 73 --QY--PPAYQLGLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --cC--hHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 12 233444333433311 15677888899999999999999885
No 234
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=23 Score=33.72 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=58.3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhh---ccCChhHHHHHHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACA---QVKGFKLGKEIHGYVL 289 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~---~~g~~~~a~~i~~~~~ 289 (523)
|...|-.|-. .|...|+.+.|..-|.+-.+ .|-.|+. +..+-.++. ....-.++.+++++++
T Consensus 155 d~egW~~Lg~------------~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 155 DAEGWDLLGR------------AYMALGRASDALLAYRNALRLAGDNPEI--LLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred CchhHHHHHH------------HHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6678888888 88888888888888888766 3433333 333333322 2233456666666666
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
+.. | -|+.+-.-|-..+...|++ .+|...|+.|.+
T Consensus 221 ~~D--~---------------~~iral~lLA~~afe~g~~--~~A~~~Wq~lL~ 255 (287)
T COG4235 221 ALD--P---------------ANIRALSLLAFAAFEQGDY--AEAAAAWQMLLD 255 (287)
T ss_pred hcC--C---------------ccHHHHHHHHHHHHHcccH--HHHHHHHHHHHh
Confidence 521 1 1333334444566666777 777777777765
No 235
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.91 E-value=5.5 Score=37.98 Aligned_cols=98 Identities=15% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
|......+...++..-.....++++...+-.++. |+. ++|--++. .-++++++.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----------------ky~pq~~i~~ 122 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----------------KYDPQKAIYT 122 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----------------ccChHHHHHH
Confidence 5556666677777776667788888888777653 222 34433333 4468899999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+..=.+-|+-||.+|++.+|+.+.+.++...|.++.-.|+...
T Consensus 123 l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 123 LVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877766543
No 236
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.80 E-value=20 Score=36.42 Aligned_cols=66 Identities=11% Similarity=-0.046 Sum_probs=34.3
Q ss_pred HHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhc
Q 035847 122 ISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKC 197 (523)
Q Consensus 122 ~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~ 197 (523)
++.|..|+... ..+.+...++.|+.+-+.-+++. |..|+.. ...+-+...++.
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-----------------------ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-----------------------GAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-----------------------CCCccccCCCcccHHHHHHHC
Confidence 34455554432 33455555666777655555544 4333321 112334555667
Q ss_pred CChHHHHHHHhcC
Q 035847 198 RYLKVAHCKFSKI 210 (523)
Q Consensus 198 g~~~~A~~vf~~m 210 (523)
|+.+.+..+++.-
T Consensus 79 g~~~~v~~Ll~~~ 91 (413)
T PHA02875 79 GDVKAVEELLDLG 91 (413)
T ss_pred CCHHHHHHHHHcC
Confidence 7777777666643
No 237
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.78 E-value=14 Score=35.14 Aligned_cols=87 Identities=8% Similarity=0.066 Sum_probs=68.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRP 135 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 135 (523)
-|...|-.|=..|.+.|+...|...|..-.+.. .+-.-+...+..++.++++++++.. .-|+.+..-
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 378999999999999999999999998876543 2222233446778999999999763 335556666
Q ss_pred HHHHHHhcCCHHHHHHHhhh
Q 035847 136 VLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~ 155 (523)
|-..+...|++.+|...|+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 66889999999999999998
No 238
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.59 E-value=5.3 Score=38.06 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=72.6
Q ss_pred hcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHhcCCCCc
Q 035847 62 FEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130 (523)
Q Consensus 62 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 130 (523)
|.......+.+-..++..-.+..+++.+...+-+++... .+.-.+-.-+.+++.-+...-++.|+-||.
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccch
Confidence 333334566677777777777788899998888877654 222233345677888888999999999999
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
++++.||+.+.+.++..+|.++.-.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999999999999999999887766
No 239
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=80.39 E-value=5.6 Score=33.51 Aligned_cols=124 Identities=12% Similarity=0.201 Sum_probs=72.6
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCCCCCCCHHH
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSSAEPCNPDI 391 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~~~~ 391 (523)
..|+.-..+ .+.|+. ++|.+.|+.+...|-..|- ...---++.+|-+.|++++|...+++ +.+.|+.. +++-
T Consensus 12 ~ly~~a~~~-l~~~~Y--~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp---~vdY 85 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNY--EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP---NVDY 85 (142)
T ss_pred HHHHHHHHH-HHhCCH--HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC---CccH
Confidence 344444444 466788 9999999999987644444 35556788899999999999988887 34556433 3333
Q ss_pred HHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHHHHHHHHHHcCCcCC
Q 035847 392 AEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLMRLYSEIKKIGYMKR 445 (523)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 445 (523)
+... +.+.-...+.+.+..|..-++.......++..+++|+++--+.-|.||
T Consensus 86 a~Y~--~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 86 AYYM--RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHH--HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 3210 011000111123334444455566677777777776665444444443
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=80.21 E-value=66 Score=32.01 Aligned_cols=106 Identities=10% Similarity=0.003 Sum_probs=67.5
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--hHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 180 LESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK-----QKHLV--SWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 180 ~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~-----~~~~~--t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
..|. ...+.+.+...|..|+++.|.++.+.-. +||+. .-..|+.+-+ .-.-.-+...|...-.
T Consensus 183 ~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA---------~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 183 KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA---------MSLLDADPASARDDAL 253 (531)
T ss_pred hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH---------HHHhcCChHHHHHHHH
Confidence 3443 4567889999999999999999998754 35553 3444555211 1111234555555444
Q ss_pred HHHhcCCCCCHHH-HHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 252 RMIQTDMQPNTIS-LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 252 ~M~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
+-. .+.||.+- -...-.++.+.|++.++-.|++.+.+..-.|+
T Consensus 254 ~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 254 EAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 333 35566433 22344578889999999999999988655444
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=79.97 E-value=30 Score=36.84 Aligned_cols=79 Identities=9% Similarity=-0.042 Sum_probs=42.2
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHc-c----------------HHHHhhccCChHHHHHHHHHHHHhcCCCCc
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE-G----------------VYKACSELKDHRVGKDVYDYMISIKFEGNA 130 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g----------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 130 (523)
|-...|..|-..-.+.-.++-|...|-+...- | -...-+--|.+++|+.++-.|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-----
Confidence 45566666555544444555555555333211 1 1111223466677777766665443
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
..|.++.+.|++-...++++.
T Consensus 765 ----LAielr~klgDwfrV~qL~r~ 785 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRN 785 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHc
Confidence 246667777777777777665
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=79.70 E-value=52 Score=34.21 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC-CCh---------hhHHHHHHhhhhcCCccccchhh-ccCCchHHHHHHHHHHhc
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ-KHL---------VSWNAMLAGYALGGFREEITGFT-QYGDGETALEFFSRMIQT 256 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~-~~~---------~t~~~li~~~~~~g~~~~i~~~~-~~g~~~~A~~lf~~M~~~ 256 (523)
..++...+=.||-+.+.+.+..-.+ +++ ..|+.++..++ +.- .....+.|.+++..+.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~---------~~~~~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFL---------GIDGEDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHc---------CCcccCCCHHHHHHHHHHHHHh
Confidence 3455555666777776666655332 333 25666666222 110 245677888899888874
Q ss_pred CCCCCHHHHHHHHH-HhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHH
Q 035847 257 DMQPNTISLSGVLA-ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 257 g~~p~~~t~~~ll~-a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~ 335 (523)
-|+..-|...-. .+...|+++.|.+.++.......... +-....+=-+.-.+....++ ++|.
T Consensus 263 --yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-------------Ql~~l~~~El~w~~~~~~~w--~~A~ 325 (468)
T PF10300_consen 263 --YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-------------QLHHLCYFELAWCHMFQHDW--EEAA 325 (468)
T ss_pred --CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-------------hHHHHHHHHHHHHHHHHchH--HHHH
Confidence 577777654433 34457889999998887653111100 11122333344557777889 9999
Q ss_pred HHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH-------HHHHHHHHhCC
Q 035847 336 RYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF-------DDTLNFMKKMP 378 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~-------~~A~~~~~~m~ 378 (523)
+.|..+.+.-...+...+|-.- ..+...|+. ++|.+++.+.|
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a-~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAA-ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHH-HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 9999999863343333333221 133467777 88888888864
No 243
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.66 E-value=6.5 Score=30.50 Aligned_cols=44 Identities=9% Similarity=0.043 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
=+.++-++.+....+.|++.+..+.+++|-+.+++.-|.++|+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 67 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEA 67 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555566666667899999999999999999999999999998
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=17 Score=39.35 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 83 LGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.|++++|..-|-+-...- +++-+-...++..-...++.+.+.|+. +...-+.|+..|.|.++.++-.++.+.
T Consensus 381 Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 466666665554322110 555555555556666667777777754 445556788888888888777777666
No 245
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.84 E-value=25 Score=29.87 Aligned_cols=74 Identities=11% Similarity=0.128 Sum_probs=50.4
Q ss_pred hHHHHHHHHHH---hcCChHHHHHHHhcCC--CC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 185 LVNNSLMDFYA---KCRYLKVAHCKFSKIK--QK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 185 ~~~~~li~~~~---k~g~~~~A~~vf~~m~--~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+.+.||+... ..++++++..+++.|. .| .+.++-..|. ...|++.+|+++|++....
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--------------i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--------------IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--------------HHcCCHHHHHHHHHhhhcc
Confidence 34455554433 4789999999999885 33 4456666655 7899999999999999886
Q ss_pred CCCCCHHHHHHHHHHhhcc
Q 035847 257 DMQPNTISLSGVLAACAQV 275 (523)
Q Consensus 257 g~~p~~~t~~~ll~a~~~~ 275 (523)
+.. ..|..-|.++|-.
T Consensus 74 ~~~---~p~~kAL~A~CL~ 89 (153)
T TIGR02561 74 AGA---PPYGKALLALCLN 89 (153)
T ss_pred CCC---chHHHHHHHHHHH
Confidence 532 2455555555543
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.36 E-value=3.2 Score=25.49 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57788889999999999999998743
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.98 E-value=66 Score=30.72 Aligned_cols=244 Identities=13% Similarity=0.080 Sum_probs=135.2
Q ss_pred ccCCCChHHHHHHHHHHHHhC-C-CcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccC
Q 035847 32 CPKLNNLELGIQVHAHLIVCG-V-ELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELK 109 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~ 109 (523)
..+.|+++.|..++......- . .|+... .--...||.=...+.+..++++|...+++-.+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~-------~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~----------- 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAE-------ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD----------- 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHH-------HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----------
Confidence 346789999999998887543 1 111100 11235677777777665588888888866333
Q ss_pred ChHHHHHHHHHHHH-hcCCCC-----ceeHhHHHHHHHhcCCHHH---HHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 110 DHRVGKDVYDYMIS-IKFEGN-----ACVKRPVLDMFIKCGRMEM---ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 110 ~~~~a~~~~~~m~~-~g~~p~-----~~~~~~li~~~~~~g~~~~---A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+++.-.+ ....|+ ..+...|+.+|...+..+. |.++.+. ++. ..
T Consensus 65 -------~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~-------------------l~~-e~ 117 (278)
T PF08631_consen 65 -------ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRL-------------------LES-EY 117 (278)
T ss_pred -------HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-------------------HHH-hC
Confidence 2222000 011222 2466778888888877654 4444444 333 22
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-C--ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-K--HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~--~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
.-...++-.-+..+.+.++.+.+.+++.+|.. . ...++..++..+- -+... ....|...+..+....
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~---------~l~~~-~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIK---------QLAEK-SPELAAFCLDYLLLNR 187 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHH---------HHHhh-CcHHHHHHHHHHHHHH
Confidence 22245555667777778999999999988864 2 3356666666221 22333 3467778888877766
Q ss_pred CCCCHHHHH-----HHHHHhhccCC------hhHHHHHHHHHHH-hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHh
Q 035847 258 MQPNTISLS-----GVLAACAQVKG------FKLGKEIHGYVLR-HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGR 325 (523)
Q Consensus 258 ~~p~~~t~~-----~ll~a~~~~g~------~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~ 325 (523)
+.|....+. ..+-...+.++ ++...++++.+.+ .+-+.+..+-+++.. ..||..- .+-+
T Consensus 188 ~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~--------LLW~~~~-~~~~ 258 (278)
T PF08631_consen 188 FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHT--------LLWNKGK-KHYK 258 (278)
T ss_pred hCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH--------HHHHHHH-HHHh
Confidence 776653111 11111222222 4444455554333 233334333333332 4577643 4446
Q ss_pred cCCCchHHHHHHHHHh
Q 035847 326 CGAIQKNEGWRYFEMM 341 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m 341 (523)
.+++ ++|.+.|+--
T Consensus 259 ~k~y--~~A~~w~~~a 272 (278)
T PF08631_consen 259 AKNY--DEAIEWYELA 272 (278)
T ss_pred hcCH--HHHHHHHHHH
Confidence 6778 8898888743
No 248
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=77.88 E-value=66 Score=33.43 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=90.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhc-CCCC-----ceeHhHHHHHHHh----cCCHHHHHHHhhhccccccCchhhHhhH
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIK-FEGN-----ACVKRPVLDMFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEI 170 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~ 170 (523)
+++..+-.||-+.+.+.+..-.+.+ +.-. .-+|...+..++. ....+.|.++++.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~--------------- 258 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEE--------------- 258 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH---------------
Confidence 6666667778888887777655432 1110 1234444433333 3345566666665
Q ss_pred hhhhhhcCCCCCchhHHHHHH-HHHHhcCChHHHHHHHhcCCC-----C---ChhhHHHHHHhhhhcCCccccchhhccC
Q 035847 171 HPHHLKKDDLESDLLVNNSLM-DFYAKCRYLKVAHCKFSKIKQ-----K---HLVSWNAMLAGYALGGFREEITGFTQYG 241 (523)
Q Consensus 171 ~~~~~~~~g~~~d~~~~~~li-~~~~k~g~~~~A~~vf~~m~~-----~---~~~t~~~li~~~~~~g~~~~i~~~~~~g 241 (523)
+.. .-|+...|.-.- ..+...|++++|.+.|+.... | ....|. +.- .+.-..
T Consensus 259 ----~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E-l~w------------~~~~~~ 319 (468)
T PF10300_consen 259 ----MLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE-LAW------------CHMFQH 319 (468)
T ss_pred ----HHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH-HHH------------HHHHHc
Confidence 333 246666654433 456668999999999996432 1 122222 222 445568
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccCCh-------hHHHHHHHHHHH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACA-QVKGF-------KLGKEIHGYVLR 290 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~-~~g~~-------~~a~~i~~~~~~ 290 (523)
++++|.+.|..+.+.. .-+..+|.-+..+|. ..++. ++|.+++..+..
T Consensus 320 ~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999998842 224444544444432 35666 777777766654
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=80 Score=34.60 Aligned_cols=179 Identities=11% Similarity=0.116 Sum_probs=113.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH----HHHHhcCChHHHHHHH
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM----DFYAKCRYLKVAHCKF 207 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li----~~~~k~g~~~~A~~vf 207 (523)
..-.-|++..+...++.|..+-.. .+..+| .-..+. +-+-+.|+.++|..-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~----------------------~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qY 391 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS----------------------QHLDED--TLAEIHRKYGDYLYGKGDFDEATDQY 391 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh----------------------cCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 455678888888888888888655 123332 222233 3444679999998877
Q ss_pred hcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 208 SKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 208 ~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
-+-.. ..--..+|. -|.++.+..+-..+++.+.+.|+. +...-+.||.+|.+.++.+.-.++.+.
T Consensus 392 I~tI~--~le~s~Vi~------------kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 392 IETIG--FLEPSEVIK------------KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHcc--cCChHHHHH------------HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 54321 111133566 777777777778888999998875 455557799999999999887776554
Q ss_pred HHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCH
Q 035847 288 VLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQF 367 (523)
Q Consensus 288 ~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 367 (523)
-. .|.. ..-....+.-+.+.+-. ++|..+-... +. +... +--.+-..|++
T Consensus 457 ~~-~g~~------------------~fd~e~al~Ilr~snyl--~~a~~LA~k~----~~--he~v---l~ille~~~ny 506 (933)
T KOG2114|consen 457 CD-KGEW------------------FFDVETALEILRKSNYL--DEAELLATKF----KK--HEWV---LDILLEDLHNY 506 (933)
T ss_pred CC-Ccce------------------eeeHHHHHHHHHHhChH--HHHHHHHHHh----cc--CHHH---HHHHHHHhcCH
Confidence 33 1211 11234456666666666 6666543322 22 1222 23344567899
Q ss_pred HHHHHHHHhCCC
Q 035847 368 DDTLNFMKKMPF 379 (523)
Q Consensus 368 ~~A~~~~~~m~~ 379 (523)
++|++++..||.
T Consensus 507 ~eAl~yi~slp~ 518 (933)
T KOG2114|consen 507 EEALRYISSLPI 518 (933)
T ss_pred HHHHHHHhcCCH
Confidence 999999999974
No 250
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=77.42 E-value=41 Score=28.03 Aligned_cols=132 Identities=13% Similarity=0.089 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|..+++.++.....++. |..-||-+|--....-+-+-.++.++..-+-==+ ...|++...
T Consensus 15 dG~V~qGveii~k~v~Ss----------------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi---s~C~NlKrV 75 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS----------------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI---SKCGNLKRV 75 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-----------------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G---GG-S-THHH
T ss_pred hchHHHHHHHHHHHcCcC----------------CccccceeeeecchhhchhHHHHHHHHHhhhcCc---hhhcchHHH
Confidence 477888888888777653 3444444444444433444444444333221000 111222222
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
..-+-. . ..+..-....++...+.|+-|.-.++..+ +.. .-++++...-.+-.+|
T Consensus 76 i~C~~~---~--n~~se~vD~ALd~lv~~~kkDqLdki~~~-------------------l~k-n~~~~p~~L~kia~Ay 130 (161)
T PF09205_consen 76 IECYAK---R--NKLSEYVDLALDILVKQGKKDQLDKIYNE-------------------LKK-NEEINPEFLVKIANAY 130 (161)
T ss_dssp HHHHHH---T--T---HHHHHHHHHHHHTT-HHHHHHHHHH-------------------H------S-HHHHHHHHHHH
T ss_pred HHHHHH---h--cchHHHHHHHHHHHHHhccHHHHHHHHHH-------------------Hhh-ccCCCHHHHHHHHHHH
Confidence 111111 1 22334445566777777777777777776 543 4567777777888899
Q ss_pred HhcCChHHHHHHHhcC
Q 035847 195 AKCRYLKVAHCKFSKI 210 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m 210 (523)
.|.|+..+|.+++.+.
T Consensus 131 ~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 131 KKLGNTREANELLKEA 146 (161)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHH
Confidence 9999999888887754
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.29 E-value=1.1e+02 Score=33.06 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=69.4
Q ss_pred HHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhc
Q 035847 248 EFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326 (523)
Q Consensus 248 ~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~ 326 (523)
.+++.+.. .|......|.+--+.-+...|...+|.++-.+.. -||-..|=-=+.+++..
T Consensus 669 ~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--------------------ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 669 KLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--------------------IPDKRLWWLKLTALADI 728 (829)
T ss_pred HHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--------------------CcchhhHHHHHHHHHhh
Confidence 34444432 3444555666666677777888888888754332 36777777788888888
Q ss_pred CCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCC
Q 035847 327 GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFE 380 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~ 380 (523)
+++ ++-+++-.+++. ..-|.-.+.+|.+.|+.+||.+++.+.+-.
T Consensus 729 ~kw--eeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 729 KKW--EELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred hhH--HHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 888 666555444432 445666778888888888888888887533
No 252
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.10 E-value=67 Score=30.36 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=48.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccc--------cchhhccCCchHHHHHHHHH
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREE--------ITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~--------i~~~~~~g~~~~A~~lf~~M 253 (523)
-|......+-..|.+.|++.+|+.-|-.-..++...+-.++.-+...|...+ |--|.-.++...|..+|...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3677888888999999999999998877666666665445554444555544 44455567777777777666
Q ss_pred Hhc
Q 035847 254 IQT 256 (523)
Q Consensus 254 ~~~ 256 (523)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.86 E-value=4.7 Score=24.76 Aligned_cols=24 Identities=4% Similarity=0.371 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+|..|-+.|.+.|++++|.+++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788888899999999888877
No 254
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.71 E-value=5.6 Score=31.17 Aligned_cols=60 Identities=7% Similarity=0.071 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHH
Q 035847 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMD 192 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~ 192 (523)
+.++-++.+....+.|++.+..+.++++-+.+++..|.++|+. ++. .+.+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~-------------------iK~-K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEG-------------------IKD-KCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHH-------------------HHH-HTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-HccChHHHHHHHHH
Confidence 3444555555666889999999999999999999999999998 665 44444447777664
No 255
>PHA03100 ankyrin repeat protein; Provisional
Probab=76.48 E-value=89 Score=32.39 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCC--hHHHHHHHhcCC---CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 188 NSLMDFYAKCRY--LKVAHCKFSKIK---QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 188 ~~li~~~~k~g~--~~~A~~vf~~m~---~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
.+.+...++.|+ .+-+..+++.=. .+|...++.|.. + +..|+ .++++.+.+.|..|+.
T Consensus 216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~------------A-~~~~~----~~iv~~Ll~~gad~n~ 278 (480)
T PHA03100 216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHY------------A-VYNNN----PEFVKYLLDLGANPNL 278 (480)
T ss_pred HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHH------------H-HHcCC----HHHHHHHHHcCCCCCc
Confidence 455556667777 777777766522 244444555544 2 34454 3455555666766654
Q ss_pred HH---HHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 263 IS---LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 263 ~t---~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
.. .+.+ ...+..+.. +++..+.+.|...+
T Consensus 279 ~d~~g~tpl-~~A~~~~~~----~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 279 VNKYGDTPL-HIAILNNNK----EIFKLLLNNGPSIK 310 (480)
T ss_pred cCCCCCcHH-HHHHHhCCH----HHHHHHHhcCCCHH
Confidence 32 1222 222333443 34555566665443
No 256
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.90 E-value=1e+02 Score=31.90 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=48.3
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc-chHHHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV-FSWTSMMGMYN 81 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~-~~~~~li~~~~ 81 (523)
++.|+.+|.+-..-. ++|.+-|+.-..++++.|+++.|.+=-..-++. .|+. -.|+-.=.++.
T Consensus 18 ~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l---------------~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL---------------NPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc---------------CCchhhHHHHhHHHHH
Confidence 678888888766543 338888999999999999988876644433332 2222 34444555555
Q ss_pred hcCCchHHHHHHHH
Q 035847 82 VLGYYEEIVNLFYL 95 (523)
Q Consensus 82 ~~g~~~~A~~l~~~ 95 (523)
-.|++++|+..|.+
T Consensus 82 ~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 82 GLGDYEEAILAYSE 95 (539)
T ss_pred hcccHHHHHHHHHH
Confidence 55555555555544
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=75.46 E-value=71 Score=29.84 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN---TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
-|.+.|.+..|..-|++|.+. ..-+ ...+-.+..+|-..|..++|...-..+..
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 678899999999999999886 2222 24455677888889988888887655543
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.41 E-value=32 Score=32.32 Aligned_cols=89 Identities=12% Similarity=0.097 Sum_probs=61.4
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 100 (523)
.|+..+..+ ++|++..|.+.|...++...... + .|| .+=-|-..+...|++++|...|..+.+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~-~--------~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNST-Y--------TPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc-c--------cch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCC
Confidence 588888766 67778889888888887653110 0 233 33347788888889999988888876643
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISI 124 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~ 124 (523)
+-....+.|+.++|..++..+++.
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445556677777777777777665
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.10 E-value=87 Score=30.69 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCchHHHHhHHHhhh----C----CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc---CHhHHHHHHHHH
Q 035847 293 IQLSTGVGIALISIQ----G----LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP---AMEQYCCMVDLL 361 (523)
Q Consensus 293 ~~~~~~~~~~li~~y----~----~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p---~~~ty~~li~~~ 361 (523)
..++..++..++..- + ......+|..+...+.+.|++ +.|...+..+.+. +..+ .....-.-.+.+
T Consensus 118 ~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~--~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akll 194 (352)
T PF02259_consen 118 MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNF--QLALSALNRLFQL-NPSSESLLPRVFLEYAKLL 194 (352)
T ss_pred hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCc--HHHHHHHHHHhcc-CCcccCCCcchHHHHHHHH
Confidence 355666666666544 2 134556788999999999999 9999988888753 2111 233333445666
Q ss_pred HhhCCHHHHHHHHHhC
Q 035847 362 ARAGQFDDTLNFMKKM 377 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m 377 (523)
-..|+-++|...+++.
T Consensus 195 w~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 195 WAQGEQEEAIQKLREL 210 (352)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 6778888888887653
No 260
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.99 E-value=94 Score=31.03 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhc---cCCchHHHHHHHHHHhcCCCCCH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQ---YGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~---~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
.|+-.|-...+++...++++.|+.. ++..-..+..-|+- ++.+ .|+.++|++++..+....-.+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yaf--------ALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAF--------ALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHH--------HHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3444588889999999999999763 22211111111111 4445 89999999999997777677888
Q ss_pred HHHHHHHHHh
Q 035847 263 ISLSGVLAAC 272 (523)
Q Consensus 263 ~t~~~ll~a~ 272 (523)
.||..+-..|
T Consensus 218 d~~gL~GRIy 227 (374)
T PF13281_consen 218 DTLGLLGRIY 227 (374)
T ss_pred HHHHHHHHHH
Confidence 8887765544
No 261
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=73.47 E-value=66 Score=28.58 Aligned_cols=132 Identities=10% Similarity=0.116 Sum_probs=96.9
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
|.+..--.|-. +..+.|+..+|...|.+-..--+--|......+-++....++.-.+.+.++.+.+..
T Consensus 87 pTvqnr~rLa~------------al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 87 PTVQNRYRLAN------------ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred hhHHHHHHHHH------------HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 55555556666 778899999999999998765456678888889899999999999999999887754
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
|+ +-.||.. -.+-..|.-.|+. .+|..-|+....- -|+...-.-.-..+.+.|+.++|..
T Consensus 155 --pa-----------~r~pd~~--Ll~aR~laa~g~~--a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 155 --PA-----------FRSPDGH--LLFARTLAAQGKY--ADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred --Cc-----------cCCCCch--HHHHHHHHhcCCc--hhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 21 1134432 3456778889999 9999999988754 5666555445566778888877765
Q ss_pred HHHh
Q 035847 373 FMKK 376 (523)
Q Consensus 373 ~~~~ 376 (523)
-+.+
T Consensus 215 q~~~ 218 (251)
T COG4700 215 QYVA 218 (251)
T ss_pred HHHH
Confidence 4443
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=72.77 E-value=44 Score=29.45 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCC-c------e
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGN-A------C 131 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~------~ 131 (523)
..|..+..-|++.|+.++|++.|.++.... +|+.+...+++..+.....+....--.+. . .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 578889999999999999999999988754 78888888999888887777654422221 1 2
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+|..|-. ...+++..|-+.|-+
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHc
Confidence 3333332 235788888888877
No 263
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.67 E-value=22 Score=27.64 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+.-++.+-++++....+.|++....+.|.||-+.+++..|..+++-+..
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4556777778888888999999999999999999999999999997763
No 264
>PRK09687 putative lyase; Provisional
Probab=72.39 E-value=93 Score=29.78 Aligned_cols=227 Identities=13% Similarity=0.044 Sum_probs=121.5
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhccCCh----HHHHHHHHHHHHhcCCCCceeHhH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSELKDH----RVGKDVYDYMISIKFEGNACVKRP 135 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~~~~~ 135 (523)
.+|....-..+.++.+.|. ++++..+..+.... .+.+++..|+. +.+..++..+... .||..+-.+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 5566666666777766664 34444444444332 56666666653 2344444444222 566666666
Q ss_pred HHHHHHhcCCHH-----HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 136 VLDMFIKCGRME-----MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 136 li~~~~~~g~~~-----~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+.+++..+.-. .+...+.. . -..++..+--..+.++++.|+.+....+...+
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~-------------------~---~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQI-------------------T---AFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHH-------------------H---hhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 776666654211 12222211 1 22345566667777778887765555555555
Q ss_pred CCCChhhHHHHHHhhhhcCCccccchhhccC-CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 211 KQKHLVSWNAMLAGYALGGFREEITGFTQYG-DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 211 ~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
..+|...-..-+. ++.+.+ ....+...+..+.. .+|...-...+.++++.++.+-...+... .
T Consensus 169 ~d~~~~VR~~A~~------------aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~-L 232 (280)
T PRK09687 169 KDPNGDVRNWAAF------------ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKE-L 232 (280)
T ss_pred cCCCHHHHHHHHH------------HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHH-H
Confidence 5555544444444 444332 23456666666653 35666666777777777764333333332 2
Q ss_pred HhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHH
Q 035847 290 RHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361 (523)
Q Consensus 290 ~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~ 361 (523)
+.+ + ..-..+.++...|. .+|...+..+.+. .||...-...+.+|
T Consensus 233 ~~~-------------------~--~~~~a~~ALg~ig~---~~a~p~L~~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 233 KKG-------------------T--VGDLIIEAAGELGD---KTLLPVLDTLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred cCC-------------------c--hHHHHHHHHHhcCC---HhHHHHHHHHHhh---CCChhHHHHHHHHH
Confidence 211 1 22356677777776 4677777777654 34554444444443
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.08 E-value=30 Score=29.82 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=48.7
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHhcCC--CCCh---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 184 LLVNNSLMDFY---AKCRYLKVAHCKFSKIK--QKHL---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 184 ~~~~~~li~~~---~k~g~~~~A~~vf~~m~--~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
..+.+.||... .+.++.+++..+++.+. .|.. .++...+. .+.|++.+|+.+|+++..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--------------i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--------------IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--------------HHhCCHHHHHHHHHHHhc
Confidence 33455555444 45689999999999886 3443 45665544 789999999999999876
Q ss_pred cCCCCCHHHHHHHHHHhh
Q 035847 256 TDMQPNTISLSGVLAACA 273 (523)
Q Consensus 256 ~g~~p~~~t~~~ll~a~~ 273 (523)
.+ |...--..|+..|-
T Consensus 73 ~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 73 RA--PGFPYAKALLALCL 88 (160)
T ss_pred cC--CCChHHHHHHHHHH
Confidence 53 33333334444443
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.87 E-value=1.1e+02 Score=30.51 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=48.9
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc-------------HHHHhhc---cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG-------------VYKACSE---LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMF 140 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g-------------ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 140 (523)
+-+|-...+++.-+++.+.|.... ..-|+.+ .|+.+.|.+++..+....-.++..+|..+-+.|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 335888889999999999988762 3444556 789999999999876666677777777776665
Q ss_pred H
Q 035847 141 I 141 (523)
Q Consensus 141 ~ 141 (523)
-
T Consensus 228 K 228 (374)
T PF13281_consen 228 K 228 (374)
T ss_pred H
Confidence 4
No 267
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.43 E-value=1.6 Score=36.91 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=58.7
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
..+|+.+.+.+.++....+++. ....+...+....|.++..|++.++.+...++++....
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~-------------------~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~- 70 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEA-------------------LVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN- 70 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHH-------------------HHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-
T ss_pred HHHHHHHHhCCCHHHHHHHHHH-------------------HHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-
Confidence 3467777777777777777776 44325556788999999999999988999988884433
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMI 254 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~ 254 (523)
.-...++. .+-+.|.+++|.-++.++.
T Consensus 71 --yd~~~~~~------------~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 71 --YDLDKALR------------LCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp --S-CTHHHH------------HHHTTTSHHHHHHHHHCCT
T ss_pred --cCHHHHHH------------HHHhcchHHHHHHHHHHcc
Confidence 33344555 5556666666666666553
No 268
>PRK15331 chaperone protein SicA; Provisional
Probab=70.88 E-value=22 Score=30.82 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=58.7
Q ss_pred HHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 79 MYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
.+-+.|++++|..+|.-+...+ +-..|-..+..+.|.+.|......+. -|+..+--.-..|...|+.+.|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 3446899999999999877654 44444567899999999998877653 3444444567788999999999
Q ss_pred HHHhhh
Q 035847 150 SGEFEE 155 (523)
Q Consensus 150 ~~~f~~ 155 (523)
+..|+.
T Consensus 125 ~~~f~~ 130 (165)
T PRK15331 125 RQCFEL 130 (165)
T ss_pred HHHHHH
Confidence 999988
No 269
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.68 E-value=76 Score=29.87 Aligned_cols=98 Identities=12% Similarity=0.191 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
.-|+.-++.+ +.|++..|.+-|..-++..-.. ...||..-| |-.++...|+. ++|-.+|..+.
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s------------~~~~nA~yW--LGe~~y~qg~y--~~Aa~~f~~~~ 205 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNS------------TYTPNAYYW--LGESLYAQGDY--EDAAYIFARVV 205 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCC------------cccchhHHH--HHHHHHhcccc--hHHHHHHHHHH
Confidence 3687777655 5677999999888877742111 113333333 67889999999 99999999999
Q ss_pred HhcCCccCH-hHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 343 KEYNMEPAM-EQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 343 ~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+.|+-.|.. ..+--|-....+.|+-++|...+++.
T Consensus 206 k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 206 KDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 988777774 77888888889999999999998876
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=67.45 E-value=10 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666777778888888888888777654
No 271
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.36 E-value=52 Score=32.79 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHhcCCHHHHHHHhhhcc----ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--
Q 035847 138 DMFIKCGRMEMASGEFEEKD----FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-- 211 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-- 211 (523)
+.|.|.|++..|..-|+++. .....+.++..+.. ..-..+++.|.-.|.|.+++..|.+.-+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 35677888888888777730 01111111111111 1224467778888999999999988776543
Q ss_pred -CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-C-ChhHHHHHHHHH
Q 035847 212 -QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-K-GFKLGKEIHGYV 288 (523)
Q Consensus 212 -~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g-~~~~a~~i~~~~ 288 (523)
.+|+ .|+-+.|+ ++...|+++.|...|+.+++ +.|+......=|..|.+. . ..+...++|..|
T Consensus 287 ~~~N~-------KALyRrG~-----A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 287 DPNNV-------KALYRRGQ-----ALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred CCCch-------hHHHHHHH-----HHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 35555666 88889999999999999988 678887777766666542 2 233445666666
Q ss_pred HH
Q 035847 289 LR 290 (523)
Q Consensus 289 ~~ 290 (523)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 272
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.17 E-value=1.2e+02 Score=29.02 Aligned_cols=152 Identities=11% Similarity=0.077 Sum_probs=96.8
Q ss_pred CchhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHH---HhCCC---cc-hHHH-----Hhc-CCCC
Q 035847 1 WVIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLI---VCGVE---LC-AFLG-----MFE-KMPE 67 (523)
Q Consensus 1 ~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~g~~---~~-~~~~-----~f~-~~~~ 67 (523)
|--.+|+++|.-+....- -.++-+.++..+-...+...|...+...+ +..+. .+ +++. -|+ ..+.
T Consensus 147 Wis~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k 224 (361)
T COG3947 147 WISRKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPK 224 (361)
T ss_pred ehhhHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcc
Confidence 778899999999887532 23566778888888888887776544332 11110 00 0000 011 1234
Q ss_pred CCcchHHHHHHHHHh-cCCchHHHHHHHHhhHc-------------------------c-HHHHhhccCChHHHHHHHHH
Q 035847 68 RNVFSWTSMMGMYNV-LGYYEEIVNLFYLLIDE-------------------------G-VYKACSELKDHRVGKDVYDY 120 (523)
Q Consensus 68 ~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~-------------------------g-ll~~~~~~~~~~~a~~~~~~ 120 (523)
-|+.-|-..+...-. +-.++++.++....... | +-++|...|.+.+|.+++..
T Consensus 225 ~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr 304 (361)
T COG3947 225 YDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQR 304 (361)
T ss_pred ccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 466666665554432 22344454444433110 0 77888899999999999999
Q ss_pred HHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 121 MISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 121 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.+... +.+...|-.||..|+..|+--.|.+-++.
T Consensus 305 ~ltld-pL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 305 ALTLD-PLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 88764 56788889999999999997777776666
No 273
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.15 E-value=33 Score=27.00 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.-+..+-++.+....+.|++....+.|.||-+.+++-.|..+++-+..
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 335666677777788999999999999999999999999999988865
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=66.89 E-value=92 Score=31.84 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=91.7
Q ss_pred chH--HHHHHHHHhc-----CCchHHHHHHHHhh---Hcc--------HH---------HHhh-ccCChHHHHHHHHHHH
Q 035847 71 FSW--TSMMGMYNVL-----GYYEEIVNLFYLLI---DEG--------VY---------KACS-ELKDHRVGKDVYDYMI 122 (523)
Q Consensus 71 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~---~~g--------ll---------~~~~-~~~~~~~a~~~~~~m~ 122 (523)
..| ..++.|.... -..+.|+.+|.+-. ..+ .+ .+.. ...+..+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 677 7777777662 23457888898877 322 11 1111 1334566777777777
Q ss_pred HhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---chhHHHHHHHHHHhcCC
Q 035847 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES---DLLVNNSLMDFYAKCRY 199 (523)
Q Consensus 123 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---d~~~~~~li~~~~k~g~ 199 (523)
+.+ .-|......+-....-.|+++.|..+|++| . .+.| +...|..++..+ +|+
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA-------------------~--~L~Pn~A~~~~~~~~~~~~--~G~ 387 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA-------------------K--IHSTDIASLYYYRALVHFH--NEK 387 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH-------------------h--hcCCccHHHHHHHHHHHHH--cCC
Confidence 765 456666666667677788899999999992 1 2344 455555555544 799
Q ss_pred hHHHHHHHhcCCC--CCh---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 200 LKVAHCKFSKIKQ--KHL---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 200 ~~~A~~vf~~m~~--~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.++|.+.+++-.+ |.- ..---.|. .|+.++ .++|+.+|-.
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVD------------MYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHH------------HHcCCc-hhhhHHHHhh
Confidence 9999999998433 322 23333444 555555 7778877654
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.79 E-value=1.3e+02 Score=29.37 Aligned_cols=92 Identities=11% Similarity=0.073 Sum_probs=59.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHh--cCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFS--KIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~--~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
...+|..++..++..-. -+|. .+.+....+|..+.. .+.+.|+++.|...+..+...
T Consensus 117 ~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a~------------~aRk~g~~~~A~~~l~~~~~~ 175 (352)
T PF02259_consen 117 NMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFAK------------LARKAGNFQLALSALNRLFQL 175 (352)
T ss_pred HhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHHH------------HHHHCCCcHHHHHHHHHHhcc
Confidence 45677777777774321 1222 223345567888888 888999999999999998874
Q ss_pred CCCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 257 DMQP---NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 257 g~~p---~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+..+ +......-....-..|+...|...++..++.
T Consensus 176 ~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 176 NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4222 2233333344455668888888888877763
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=66.61 E-value=50 Score=27.42 Aligned_cols=81 Identities=6% Similarity=0.080 Sum_probs=57.4
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------- 100 (523)
+++..|+++.|.+.|.+.+..- ..+...||.--.++--.|+.++|++=+++-.+..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--------------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 4567888999988888877543 2467889999999999999999999888766532
Q ss_pred ---HHHHhhccCChHHHHHHHHHHHHhc
Q 035847 101 ---VYKACSELKDHRVGKDVYDYMISIK 125 (523)
Q Consensus 101 ---ll~~~~~~~~~~~a~~~~~~m~~~g 125 (523)
--..|...|+.+.|+.=|+..-+.|
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 1122334566666666666665555
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=66.18 E-value=1.7e+02 Score=30.33 Aligned_cols=134 Identities=10% Similarity=0.075 Sum_probs=79.5
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC---CchHHHHhHHHhhhCC--CCCc
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI---QLSTGVGIALISIQGL--GTGS 313 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~---~~~~~~~~~li~~y~~--~p~~ 313 (523)
+..++..-+++=++..+ +.||..+.-+++ |--....+.++++++.+..+.|- ..+....+ .-..++. .+|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~-~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLGKSQFLQH-HGHFWEAWHRRDT 255 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhchhhhhhc-ccchhhhhhcccc
Confidence 34444444444444443 457665544433 33345567888888888776542 11111100 0000111 2232
Q ss_pred c----hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 314 F----VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 314 ~----~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
. +=-.+-.+.-+.|+. +||.+.|++|.+++...-+......|+.+|...+.+.++..++.+-.
T Consensus 256 ~~~~y~KrRLAmCarklGr~--~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRL--REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred chhhhhHHHHHHHHHHhCCh--HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 2 222355566677999 99999999999874322234466779999999999999999998863
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=64.50 E-value=11 Score=23.41 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.+++.|-..|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5788899999999999999999987553
No 279
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.41 E-value=25 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCC
Q 035847 387 CNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 387 ~~~~~~~~~~~~l~~~~~~~~ 407 (523)
|+.+.|.+.++.+++++|.|.
T Consensus 15 ~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 15 GEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp T-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHHHhhCCCcH
Confidence 344444444555777777765
No 280
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.29 E-value=2.7e+02 Score=32.09 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=17.3
Q ss_pred HHHHHHHHhcC--CchHHHHHHHHhh
Q 035847 74 TSMMGMYNVLG--YYEEIVNLFYLLI 97 (523)
Q Consensus 74 ~~li~~~~~~g--~~~~A~~l~~~m~ 97 (523)
-.+|.+|++.+ .+++|+....+..
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 46778888877 6677777776665
No 281
>PRK12356 glutaminase; Reviewed
Probab=63.62 E-value=1.5e+02 Score=28.86 Aligned_cols=180 Identities=8% Similarity=0.029 Sum_probs=92.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
|.+|+-..||+++..-...|... +=|..-..++-++||. +-....+++..+++++++....+
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P~------NPmINAGAI~~~sll~------------g~~~~~~~~~il~~~~~~ag~~l 154 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKPL------NPLVNAGAIATTSLVP------------GANSDERWQRILDGQQRFAGREL 154 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCCC------CccccHHHHHHHHhcc------------CCChHHHHHHHHHHHHHHhCCCC
Confidence 88888888888875443333311 0111123345555555 42222334555666666665567
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch--HHHHH
Q 035847 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK--NEGWR 336 (523)
Q Consensus 259 ~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~--~~a~~ 336 (523)
..|..+|.+=. ..++ .-+.+-..|+..|.-++ |+ ...++.|.+.--+.- ++.-.
T Consensus 155 ~~de~v~~SE~----~t~~--RNrAlA~~lks~g~i~~---------------d~---~~~Ld~Yf~qCsi~vt~~dLA~ 210 (319)
T PRK12356 155 ALSDEVYQSEQ----TTNF--HNRAIAWLLYSYGRLYC---------------DP---MEACDVYTRQCSTLVTARDLAT 210 (319)
T ss_pred ccCHHHHHHHH----hhhH--HHHHHHHHHHHCCCCCC---------------CH---HHHHHHHHHHhccceeHHHHHH
Confidence 77777776521 1222 22233344555554321 11 223344433332211 22223
Q ss_pred HHHHhHHhcCCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC-----------------------CC
Q 035847 337 YFEMMKKEYNMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-----------------------EP 386 (523)
Q Consensus 337 ~~~~m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-----------------------~~ 386 (523)
+.-.+-.. |+.|. ..+-..+......+|.+|.+=++.-+.++...+- .+
T Consensus 211 ~~a~LAn~-G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD~~ 289 (319)
T PRK12356 211 MGATLAAG-GVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTVGLPGKSGVGGGILAVVPGKMGIAAFSPPLDSA 289 (319)
T ss_pred HHHHHHcC-CcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHhCCccccCccceeEEEeCCceEEEEECCCcCCC
Confidence 33333333 66662 3455566667778899999988888765322111 67
Q ss_pred CCHHHHHHHHHHHHh
Q 035847 387 CNPDIAEHAARHLFE 401 (523)
Q Consensus 387 ~~~~~~~~~~~~l~~ 401 (523)
||.-.|.++++.+-+
T Consensus 290 GNSv~G~~~le~ls~ 304 (319)
T PRK12356 290 GNSVRGQKAVAYVAD 304 (319)
T ss_pred CCcHHHHHHHHHHHH
Confidence 777777766666554
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=63.49 E-value=14 Score=22.88 Aligned_cols=27 Identities=7% Similarity=0.357 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 351 ~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+++.|-..|...|++++|.+++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 357888899999999999999998774
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=63.00 E-value=14 Score=23.75 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+|..+-..|...|+. ++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~--~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQP--DEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 466777888888888 8888888888765
No 284
>PRK15331 chaperone protein SicA; Provisional
Probab=62.03 E-value=85 Score=27.24 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=60.8
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
+-..|++++|..+|..+...++ -+..-+..|-..|-..++++.|...|..++ ++......|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~----------------~l~~~dp~p-- 107 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAF----------------TLLKNDYRP-- 107 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HcccCCCCc--
Confidence 3467999999999999887652 234456777788888899999999998721 121112222
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+--.-..|...|+.+.|+..|....+
T Consensus 108 --~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 --VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33344677788999999999886543
No 285
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.89 E-value=79 Score=33.32 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=71.7
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
...+.|+++.|.++-.+. -+..-|..|-++..+.+++..|.+.+.....
T Consensus 646 lal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------------------------- 694 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD------------------------- 694 (794)
T ss_pred hhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc-------------------------
Confidence 334567777777766554 2567788888888899999999888776643
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
|..|+-.+...|+- +.+..+....++.| ..|.-.-+|-..|++++..+++.+-+
T Consensus 695 ~~~LlLl~t~~g~~---~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 695 LGSLLLLYTSSGNA---EGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred hhhhhhhhhhcCCh---hHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 56677778888874 44555544444424 33444556778999999999988864
No 286
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=60.86 E-value=1.9e+02 Score=29.16 Aligned_cols=161 Identities=12% Similarity=0.123 Sum_probs=101.3
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH-
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQKHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL- 269 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll- 269 (523)
..+.-.|+.++|..+--...+-|.. .+...+.+. .+-.+++.+.|...|++-+. ..|+..+--++-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~----------~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGL----------CLYYNDNADKAINHFQQALR--LDPDHQKSKSASM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhccc----------ccccccchHHHHHHHhhhhc--cChhhhhHHhHhh
Confidence 4455668888887776655554443 455555533 34457788999999988765 346554433322
Q ss_pred --HH----------hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 035847 270 --AA----------CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY 337 (523)
Q Consensus 270 --~a----------~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~ 337 (523)
.. ..+.|.+..|.+.+.+.+. +.|+ ...|+...|-..-....+.|++ ++|+.-
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~-----------n~~~naklY~nra~v~~rLgrl--~eaisd 309 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPS-----------NKKTNAKLYGNRALVNIRLGRL--REAISD 309 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCcc-----------ccchhHHHHHHhHhhhcccCCc--hhhhhh
Confidence 22 2467888888888877664 3443 2366777888888889999999 999886
Q ss_pred HHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCC
Q 035847 338 FEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKK-MPFEPS 382 (523)
Q Consensus 338 ~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~ 382 (523)
-++..+ +.|. +..|-.--.++.-.++|++|.+-+++ |..+.+
T Consensus 310 c~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 310 CNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 665542 3333 22222222344457888999888887 444433
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.83 E-value=1.1e+02 Score=26.08 Aligned_cols=62 Identities=10% Similarity=0.076 Sum_probs=43.8
Q ss_pred hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-hhh
Q 035847 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH-LVS 217 (523)
Q Consensus 142 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d---~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~-~~t 217 (523)
..++.+++..+++. ++- +.|+ ..++-..+ +...|++++|.++|++..+.. ...
T Consensus 22 ~~~d~~D~e~lLdA-------------------Lrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 22 RSADPYDAQAMLDA-------------------LRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred hcCCHHHHHHHHHH-------------------HHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCch
Confidence 36889999999888 543 3443 33444444 568999999999999998754 447
Q ss_pred HHHHHHhhh
Q 035847 218 WNAMLAGYA 226 (523)
Q Consensus 218 ~~~li~~~~ 226 (523)
|..-+.++|
T Consensus 79 ~~kAL~A~C 87 (153)
T TIGR02561 79 YGKALLALC 87 (153)
T ss_pred HHHHHHHHH
Confidence 777777444
No 288
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.44 E-value=58 Score=25.62 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=37.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.+...|++++|+.+.+.+ .-||...|.+| +-.+.|..+....-+..|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 667799999999998877 47999988877 3346666666665555565554
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.26 E-value=39 Score=30.34 Aligned_cols=81 Identities=12% Similarity=0.170 Sum_probs=55.4
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh---cCCCCCHHHHHHH
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ---TDMQPNTISLSGV 268 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~l 268 (523)
--+.+.|+ +.|.+.|-.+.......=..|..+++ .|....+.++|..++.+..+ .+-.+|+..+.+|
T Consensus 115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLA---------tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL 184 (203)
T PF11207_consen 115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALA---------TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSL 184 (203)
T ss_pred HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHH---------HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 34556666 56677776666422222233444444 66667889999999988776 3447889999999
Q ss_pred HHHhhccCChhHHH
Q 035847 269 LAACAQVKGFKLGK 282 (523)
Q Consensus 269 l~a~~~~g~~~~a~ 282 (523)
.+.+-+.++.+.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 99999999888764
No 290
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.21 E-value=74 Score=25.36 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
...+--.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...+.++..+| .|..
T Consensus 39 ~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--------------~klGL~~~~e~~l~rla~~g-~~~~ 103 (116)
T PF09477_consen 39 EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--------------WKLGLASALESRLTRLASSG-SPEL 103 (116)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--------------HHCT-HHHHHHHHHHHCT-S-SHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--------------HhhccHHHHHHHHHHHHhCC-CHHH
Confidence 33344445567889999999966666667799999998854 68898888888888887765 3444
Q ss_pred HHH
Q 035847 263 ISL 265 (523)
Q Consensus 263 ~t~ 265 (523)
..|
T Consensus 104 q~F 106 (116)
T PF09477_consen 104 QAF 106 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.15 E-value=1.8e+02 Score=30.10 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--- 212 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--- 212 (523)
|-...-+.|+.++|.+.|.+ +++......+..+.-.||..+...+...++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rd------------------Llke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRD------------------LLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHhCChHHHHHHHHH------------------HHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 33444456788888887777 345422223455788899999999999999999887643
Q ss_pred CC--hhhHHHHHH
Q 035847 213 KH--LVSWNAMLA 223 (523)
Q Consensus 213 ~~--~~t~~~li~ 223 (523)
|. ..+|++.+-
T Consensus 327 pkSAti~YTaALL 339 (539)
T PF04184_consen 327 PKSATICYTAALL 339 (539)
T ss_pred CchHHHHHHHHHH
Confidence 33 356777654
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.13 E-value=19 Score=20.12 Aligned_cols=24 Identities=8% Similarity=-0.126 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhc
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
....+-..+...|++++|++++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345677889999999999999864
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.96 E-value=1.4e+02 Score=28.56 Aligned_cols=121 Identities=9% Similarity=0.099 Sum_probs=81.7
Q ss_pred ccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhc-c-CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 239 QYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQ-V-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~-~-g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
++..+.+|+++|+.... ..+--|..+...+++.... . ..+..-.++.+.+... ++-.++..+
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t---------------~~~~l~~~v 204 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVST---------------FSKSLTRNV 204 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhc---------------cccCCChhH
Confidence 56667789999984433 3466677777777777655 2 2344444555555431 112345566
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
--..|..++..+++ ..-.++++.-...-+-.-|..-|...|+.....|+..-..+++++
T Consensus 205 i~~Il~~L~~~~dW--~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 205 IISILEILAESRDW--NKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHHhcccH--HHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 67788889999998 888888876654323445678888999999999998888888776
No 294
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.27 E-value=68 Score=25.64 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC----------CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ----------KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~----------~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
++|+.+|... +......+++.=.. ....-|..|+. -|...|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~------------lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVD------------LYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHH------------HHHccCccHHHHHHHHHHhc
Confidence 4667777766 55555555442111 11124888888 99999999999999999887
No 295
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.90 E-value=23 Score=23.10 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=19.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+-.+|...|+.+.|+++++.+...|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 45677888888888888888876543
No 296
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.02 E-value=2e+02 Score=29.83 Aligned_cols=30 Identities=7% Similarity=0.130 Sum_probs=15.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
...-++|..++++-+..-...+..+|..-|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~ 96 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG 96 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc
Confidence 334445555555555555555555555444
No 297
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=55.95 E-value=63 Score=26.89 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=64.4
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-cCCCCC--HHHH
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-TDMQPN--TISL 265 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-~g~~p~--~~t~ 265 (523)
-+.+..|+++.|.+.|..... .+...||.=-. ++.-.|+.++|++=+++..+ .|-+-- ...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQ------------a~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQ------------ALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHH------------HHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 356788999999999987542 46678999888 88889999999998888776 443311 1223
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 266 SGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 266 ~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
.---..|-..|+.+.|+.=|+...+.|-
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 2222335557888899888888877663
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=55.25 E-value=1.4e+02 Score=25.82 Aligned_cols=61 Identities=11% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL- 215 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d---~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~- 215 (523)
-.+.++.+++..+++. ++- +.|. ..++-.++ +.+.|++++|.++|+++.+...
T Consensus 20 al~~~~~~D~e~lL~A-------------------Lrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDA-------------------LRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHccCChHHHHHHHHH-------------------HHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCCC
Confidence 3456789999999988 554 3443 34444444 5689999999999999976333
Q ss_pred hhHHHHHH
Q 035847 216 VSWNAMLA 223 (523)
Q Consensus 216 ~t~~~li~ 223 (523)
..|-.-+.
T Consensus 77 ~p~~kALl 84 (160)
T PF09613_consen 77 FPYAKALL 84 (160)
T ss_pred ChHHHHHH
Confidence 34444444
No 299
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=54.13 E-value=2.1e+02 Score=27.45 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=42.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHh-cCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISI-KFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+|..++..+++..-.++++.-... +..-|...|..+|+.-.+.|+..-..++.++
T Consensus 208 Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 208 ILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 555556666666666666655544 4567999999999999999999999999888
No 300
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.36 E-value=2.1e+02 Score=27.42 Aligned_cols=139 Identities=10% Similarity=0.009 Sum_probs=76.6
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH
Q 035847 193 FYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269 (523)
Q Consensus 193 ~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 269 (523)
.....|+..+|..+|+...+ .+...--.|.. .|...|+.+.|..++..+...--.........-|
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~------------~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAE------------CLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHH------------HHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44567888888887776543 22233334444 7778888888888888876543333333333334
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC-CcchHHHHHHHHHhcCCCchHHHHHHHHHhH-HhcCC
Q 035847 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT-GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK-KEYNM 347 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p-~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~-~~~g~ 347 (523)
....+.....+..++...... .| |.-.=-.+-..|...|+. ++|.+.+-.+. +..|
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aa-------------------dPdd~~aa~~lA~~~~~~g~~--e~Ale~Ll~~l~~d~~- 268 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAA-------------------DPDDVEAALALADQLHLVGRN--EAALEHLLALLRRDRG- 268 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhccc-
Confidence 444444444444444444433 22 333334466677788888 88877654444 3323
Q ss_pred ccCHhHHHHHHHHHHhhC
Q 035847 348 EPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 348 ~p~~~ty~~li~~~~~~g 365 (523)
--|...-..|+..+.-.|
T Consensus 269 ~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 269 FEDGEARKTLLELFEAFG 286 (304)
T ss_pred ccCcHHHHHHHHHHHhcC
Confidence 223344455555555444
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=53.17 E-value=22 Score=20.98 Aligned_cols=28 Identities=21% Similarity=0.390 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888888899999999999887654
No 302
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.96 E-value=31 Score=28.68 Aligned_cols=34 Identities=6% Similarity=-0.008 Sum_probs=24.9
Q ss_pred ceeEEEe---cCCCCchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 409 KVHSFIA---GDTSHSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 409 ~~~~~~~---~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
.+.+.+. .....|...++| .+|.+|.+.|-.||.
T Consensus 94 Iv~aWvNDe~tlR~ygsk~DaY----~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 94 IVYAWVNDEQTLRAYGSKTDAY----AVFRKMLERGNPPDD 130 (140)
T ss_pred EEEEEeCCCcchhhhccCCcHH----HHHHHHHhCCCCCcc
Confidence 4455555 335566667777 789999999999997
No 303
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.69 E-value=2e+02 Score=26.89 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=108.6
Q ss_pred CCCCcc----hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcch--HHH---------HhcCCCCCC--cchHHHHHHHH
Q 035847 18 PDECTV----TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCA--FLG---------MFEKMPERN--VFSWTSMMGMY 80 (523)
Q Consensus 18 ~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~---------~f~~~~~~~--~~~~~~li~~~ 80 (523)
.+||-. .|-..-.+|-..+++++|+.-+....+. .+.+. |-. +...+...+ +.-|+--+..|
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566653 4555556777788888888765554422 11111 111 333333322 23466667777
Q ss_pred HhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCC-----CceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 81 NVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEG-----NACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.++|.++.|-..+++--+ + ...-+.+.|.+++.+....=..- -...+..+-+.|.+...+++|-..|.+
T Consensus 102 ~E~GspdtAAmaleKAak--~----lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK--A----LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHhCCcchHHHHHHHHHH--H----hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 777777776666654322 0 12346777777777655431111 123455555666666666666665554
Q ss_pred ccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhcC---C----CCChhhHHHHHHhhhh
Q 035847 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAHCKFSKI---K----QKHLVSWNAMLAGYAL 227 (523)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~A~~vf~~m---~----~~~~~t~~~li~~~~~ 227 (523)
......+- .--++. ..|-+.|-.|.-..++..|++.++.- + ..|..+...||.
T Consensus 176 --------------e~~~~~~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---- 236 (308)
T KOG1585|consen 176 --------------EGVAADKC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---- 236 (308)
T ss_pred --------------hhhHHHHH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH----
Confidence 00000111 111222 23455555666678999999999983 3 246678888888
Q ss_pred cCCccccchhhccCCchHHHHHH
Q 035847 228 GGFREEITGFTQYGDGETALEFF 250 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf 250 (523)
+| ..|+.+++-.+.
T Consensus 237 --------ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 --------AY-DEGDIEEIKKVL 250 (308)
T ss_pred --------Hh-ccCCHHHHHHHH
Confidence 55 466776665443
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=52.47 E-value=50 Score=29.11 Aligned_cols=61 Identities=13% Similarity=0.329 Sum_probs=51.1
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 314 FVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 314 ~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+..+.+-|++.|+. ++|.+.|.++.+. ...|. ...+-.+|+...-.|++..+...+.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~--~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 37 MALEDLADHYCKIGDL--EEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3577788999999999 9999999999864 66665 456778889999999999999988775
No 305
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.34 E-value=21 Score=34.57 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=52.2
Q ss_pred cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CC-CCCCC--------------CCCCH
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PF-EPSSA--------------EPCNP 389 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~--------------~~~~~ 389 (523)
.|.. .+|...|+.+.+. .+.|...+.-.=++|.-.|+.+.-...+++. |. .||.+ -+|-+
T Consensus 116 ~g~~--h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 116 RGKH--HEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred cccc--cHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4555 6666777777664 3555666666667777777777777777764 32 55553 46666
Q ss_pred HHHHHHHHHHHhhCCCCCc
Q 035847 390 DIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 390 ~~~~~~~~~l~~~~~~~~~ 408 (523)
+.|++.+++.++++|.|.-
T Consensus 192 ~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCW 210 (491)
T ss_pred hhHHHHHHhhccCCCcchH
Confidence 7777777777777776654
No 306
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=51.81 E-value=1.5e+02 Score=25.10 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
...|+.-.. ..+.|++++|.+.|+.+...- ++.++-+.++++.|...+++.++..-..-..-|.-.+
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 344444443 346789999999998887653 6666666666666666666666654322234454445
Q ss_pred HHHHh
Q 035847 138 DMFIK 142 (523)
Q Consensus 138 ~~~~~ 142 (523)
.+++.
T Consensus 90 ~gL~~ 94 (142)
T PF13512_consen 90 RGLSY 94 (142)
T ss_pred HHHHH
Confidence 44443
No 307
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.59 E-value=2.5e+02 Score=27.59 Aligned_cols=146 Identities=16% Similarity=0.122 Sum_probs=91.8
Q ss_pred cCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH----HHhcCCHHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM----FIKCGRMEMA 149 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A 149 (523)
+|++.+|-..++++.+.- .=++|...|+...-+..+++++.. ..||...|.-+=.+ +..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 566667666666665543 445667777777777777776643 35665555444333 4568999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C--Ch-hh---HHHH
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K--HL-VS---WNAM 221 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~--~~-~t---~~~l 221 (523)
.+.-++ --+ --+.|.-.-.++-+.+--.|+..++.++...-.. + +. .+ |..-
T Consensus 195 Ek~A~r-------------------alq-iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 195 EKQADR-------------------ALQ-INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHh-------------------hcc-CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence 998887 111 1133566667788888888999999998877653 1 11 11 2222
Q ss_pred HHhhhhcCCccccchhhccCCchHHHHHHHH-HHhcCCCCCH
Q 035847 222 LAGYALGGFREEITGFTQYGDGETALEFFSR-MIQTDMQPNT 262 (523)
Q Consensus 222 i~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~-M~~~g~~p~~ 262 (523)
+ .+...+.++.|+++|+. |..+--+-|.
T Consensus 255 l-------------~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 L-------------FHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred H-------------hhhcccchhHHHHHHHHHHHHHhhccch
Confidence 2 45567899999999976 4443333344
No 308
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.26 E-value=1.5e+02 Score=29.68 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=13.8
Q ss_pred HHHhcCCchHHHHHHHHhh
Q 035847 79 MYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 79 ~~~~~g~~~~A~~l~~~m~ 97 (523)
.|.+.|++..|..-|++..
T Consensus 217 ~~fK~gk~~~A~~~Yerav 235 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAV 235 (397)
T ss_pred HHHhhchHHHHHHHHHHHH
Confidence 5667788888888877643
No 309
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=51.26 E-value=2.4e+02 Score=27.29 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=87.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc-C
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-D 257 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~-g 257 (523)
|.+|+-..||+++..=...|... +=|..-..++-++||. +-....+++.-+++++++... .
T Consensus 81 G~ePSG~~FNsi~~Le~~~g~P~------NPmINAGAI~~~sll~------------~~~~~~~~~~il~~~~~~ag~~~ 142 (300)
T TIGR03814 81 GVEPSGDPFNSIVQLELEPGKPR------NPFINAGAIAVTSLLP------------GRTSEEKLERILEFVRKLAGNRS 142 (300)
T ss_pred CCCCCCCCccchhhhhccCCCCC------CccccHHHHHHHHhhc------------CCCcHHHHHHHHHHHHHHhCCCC
Confidence 77888888888764322222210 0011112244455554 333333455666666666654 5
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc-hHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch--HHH
Q 035847 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL-STGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK--NEG 334 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~--~~a 334 (523)
+..|..+|.+-.. .+.-. +.+-..|+..|.-+ |+ ...++.|.+.--+.- ++.
T Consensus 143 l~~d~~v~~SE~~----t~~rN--rAla~~lks~g~i~~d~-------------------~~~Ld~Yf~qCsi~vt~~dL 197 (300)
T TIGR03814 143 ISIDEEVAQSERE----TGFRN--RALAYLLKSFGNLENDV-------------------EEVLDVYFKQCSIEMTCKDL 197 (300)
T ss_pred CccCHHHHHHHHh----hhHHH--HHHHHHHHHCCCCCCCH-------------------HHHHHHHHHHhccceeHHHH
Confidence 6677777765431 22222 22333455554332 21 122333333322110 222
Q ss_pred HHHHHHhHHhcCCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC-----------------------
Q 035847 335 WRYFEMMKKEYNMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------------------- 384 (523)
Q Consensus 335 ~~~~~~m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------------------- 384 (523)
-.+.-.+-.. |+.|. ..+-..+......+|.+|.+-++.-+.++...+-
T Consensus 198 A~~~a~LAn~-G~~P~tg~~v~s~~~~r~v~s~M~TcGmYd~SG~fa~~VGlPaKSGVgGgIlavvPg~~gIav~SP~LD 276 (300)
T TIGR03814 198 ARAGLFLANG-GVNPLTGEQVISAEVARRINALMLTCGLYDASGEFAYRVGLPAKSGVGGGILAVVPGKMGIAVFSPALD 276 (300)
T ss_pred HHHHHHHHcC-CcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHcCCccccCccceEEEEeCCceEEEEECCCcC
Confidence 2333333333 66663 3444555556667888888888877764322211
Q ss_pred CCCCHHHHHHHHHHHHh
Q 035847 385 EPCNPDIAEHAARHLFE 401 (523)
Q Consensus 385 ~~~~~~~~~~~~~~l~~ 401 (523)
.+||.-.+.++.+.+-+
T Consensus 277 ~~GNSv~G~~~le~ls~ 293 (300)
T TIGR03814 277 AAGNSVAGQKALELLSE 293 (300)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 67777777666665543
No 310
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.22 E-value=18 Score=29.99 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=25.6
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAAC 272 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 272 (523)
..|.-.+|..+|+.|..+|-.||. |+.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 456667899999999999999985 66777654
No 311
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=50.94 E-value=1.9e+02 Score=26.01 Aligned_cols=177 Identities=13% Similarity=0.077 Sum_probs=96.8
Q ss_pred HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC--CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC
Q 035847 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD--DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH 214 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~ 214 (523)
.+...|++++|...|++ +... +-.--....-.+..+|-+.|+.+.|...|++..+ |+
T Consensus 14 ~~~~~g~y~~Ai~~f~~-------------------l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEK-------------------LIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHCT-HHHHHHHHHH-------------------HHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHCCCHHHHHHHHHH-------------------HHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 45667889999999888 4331 1111233445678899999999999999988653 32
Q ss_pred --hhhHHHHHHhhhhcCCcccc-chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 215 --LVSWNAMLAGYALGGFREEI-TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 215 --~~t~~~li~~~~~~g~~~~i-~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+.+-..+.|.+.-.....+ ......+...+|+.. |..+|.-+-...-...|.+....+.+.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH
Confidence 23344444422100000000 001111122333433 444555555556666666655444331
Q ss_pred cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHH
Q 035847 292 HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDT 370 (523)
Q Consensus 292 g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A 370 (523)
=-. .- -.+..-|.+.|.. ..|..-|+.+.+.|.-.|. ......|+.++-+.|..+.|
T Consensus 140 la~-------------------~e-~~ia~~Y~~~~~y--~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 140 LAE-------------------HE-LYIARFYYKRGKY--KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHH-------------------HH-HHHHHHHHCTT-H--HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHH-------------------HH-HHHHHHHHHcccH--HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 000 00 1245678899999 9999999999988533333 35667888899999988855
Q ss_pred H
Q 035847 371 L 371 (523)
Q Consensus 371 ~ 371 (523)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 4
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=50.75 E-value=17 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
+-|..+|+.|-..|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 346889999999999999999986
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.77 E-value=91 Score=28.05 Aligned_cols=76 Identities=14% Similarity=0.029 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
++|++.|-.+...+..-+....-.|...|. ..|.+++.+++-...+..-. -..+|...+.+|.+.|-+.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----------~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----------DDNFNPEILKSLASIYQKL 191 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----------CCCCCHHHHHHHHHHHHHh
Confidence 578999999988876655555555555554 67889999988887764321 1257889999999999999
Q ss_pred CCchHHH
Q 035847 84 GYYEEIV 90 (523)
Q Consensus 84 g~~~~A~ 90 (523)
|+++.|.
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9999875
No 314
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.53 E-value=48 Score=21.98 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=19.7
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 270 (523)
+.|...++..++++|.+.|+.-+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45556666666666666666666666655543
No 315
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.97 E-value=53 Score=29.27 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+......+-+++.-...|+...|..++.++...|+.++|.++..++
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444443356899999999999999999999999998886
No 316
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=48.50 E-value=2e+02 Score=25.69 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=75.9
Q ss_pred CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-CCchhHHHHHHHHHHhcCChHHHH
Q 035847 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAH 204 (523)
Q Consensus 126 ~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d~~~~~~li~~~~k~g~~~~A~ 204 (523)
..|++..--.|-......|+..+|...|++ --. |+ .-|....-.+-++....++...|.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~q-------------------als-G~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQ-------------------ALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHH-------------------Hhc-cccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 356666666677788888888888888887 333 43 345556666667777778888887
Q ss_pred HHHhcCCC--C---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH-HHHHHHHhhccCCh
Q 035847 205 CKFSKIKQ--K---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS-LSGVLAACAQVKGF 278 (523)
Q Consensus 205 ~vf~~m~~--~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t-~~~ll~a~~~~g~~ 278 (523)
..++.+-+ | ...+.-.+-. .|.-.|++.+|..-|+.....--.|.... |..+ +++.|+.
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR------------~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~ 209 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFAR------------TLAAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRL 209 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHH------------HHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcch
Confidence 77776543 1 1122222333 66677888888888887776433333333 3333 3445555
Q ss_pred hHHHHHH
Q 035847 279 KLGKEIH 285 (523)
Q Consensus 279 ~~a~~i~ 285 (523)
+++..-+
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 5555433
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.86 E-value=3.7e+02 Score=28.62 Aligned_cols=177 Identities=11% Similarity=0.091 Sum_probs=101.1
Q ss_pred chHHHHHHHHhhHcc-----------HHHH-hhccCChHHHHHHHHHHHH-------hcCCCCceeHhHHHHHHHhcC--
Q 035847 86 YEEIVNLFYLLIDEG-----------VYKA-CSELKDHRVGKDVYDYMIS-------IKFEGNACVKRPVLDMFIKCG-- 144 (523)
Q Consensus 86 ~~~A~~l~~~m~~~g-----------ll~~-~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-- 144 (523)
..+|+..|+..-..| ...+ .+...|++.|...+....+ .| +......+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 457888888777776 3333 5566789999999998877 44 4456667777777754
Q ss_pred ---CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCC-Chhh--
Q 035847 145 ---RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK-CRYLKVAHCKFSKIKQK-HLVS-- 217 (523)
Q Consensus 145 ---~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k-~g~~~~A~~vf~~m~~~-~~~t-- 217 (523)
+.+.|+.+|.++ ... | .|+....-..+..... -.+...|.+.|..--+. .+.+
T Consensus 305 ~~~d~~~A~~~~~~a------------------A~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~ 364 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKA------------------AEL-G-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY 364 (552)
T ss_pred ccccHHHHHHHHHHH------------------Hhc-C-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH
Confidence 556688888772 111 2 2333222222222222 34567777777765432 1111
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~ 297 (523)
+-+++- .. +..-..+...|..+|+...+.| .|-..--...+..+.. +..+.+...+..+...|.+...
T Consensus 365 ~la~~y--~~--------G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q 432 (552)
T KOG1550|consen 365 RLALCY--EL--------GLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQ 432 (552)
T ss_pred HHHHHH--Hh--------CCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHh
Confidence 212111 00 2223346778888888888877 4443333334444544 7777777777777776665444
No 318
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.80 E-value=2.3e+02 Score=26.12 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=69.9
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
.|...|.|| .+..++++++|++++.+- .+.|+... -++.++...|+.+.|..++..+
T Consensus 78 ~~~~~~~g~----------W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~-------- 134 (226)
T PF13934_consen 78 KYIKFIQGF----------WLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAV-------- 134 (226)
T ss_pred HHHHHHHHH----------HHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhc--------
Confidence 466677755 556678888888877332 23333222 3666666678888777776543
Q ss_pred HHHHhHHHhhhCCCCCcchH---HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHH
Q 035847 297 TGVGIALISIQGLGTGSFVW---NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373 (523)
Q Consensus 297 ~~~~~~li~~y~~~p~~~~~---n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 373 (523)
+|+..+. +.++.. ..++.+ .||..+-+...+. -....+..++..+.....-....+.
T Consensus 135 -------------~p~l~s~~~~~~~~~~-La~~~v--~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~ 194 (226)
T PF13934_consen 135 -------------GPPLSSPEALTLYFVA-LANGLV--TEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDE 194 (226)
T ss_pred -------------CCCCCCHHHHHHHHHH-HHcCCH--HHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3333443 223334 566777 8888776655442 1145677777776654433344444
Q ss_pred HHhCCCCC
Q 035847 374 MKKMPFEP 381 (523)
Q Consensus 374 ~~~m~~~p 381 (523)
+-++|+.+
T Consensus 195 Ll~LPl~~ 202 (226)
T PF13934_consen 195 LLSLPLDE 202 (226)
T ss_pred HHhCCCCh
Confidence 55566543
No 319
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=47.13 E-value=2.7e+02 Score=26.78 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc------cccccC------chhhHhhHhhhhhhcCC
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK------DFSNLS------LLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~------~~~~~~------~~~~~~~~~~~~~~~~g 179 (523)
..|+++|..++... --..+-+-+|.++....+..+|...|..+ +.+.++ ..+..-. +...+
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Yk-----ld~~~ 222 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYK-----LDAGL 222 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceE-----EecCC
Confidence 45666777666542 22345556777777777777777766552 111000 0000000 12224
Q ss_pred CCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCC-----------CCh-----hhHHHHHHhhhhcCCccccchhhccCC
Q 035847 180 LESDLLVNNSLMDFYAKCR-YLKVAHCKFSKIKQ-----------KHL-----VSWNAMLAGYALGGFREEITGFTQYGD 242 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g-~~~~A~~vf~~m~~-----------~~~-----~t~~~li~~~~~~g~~~~i~~~~~~g~ 242 (523)
+..|+.-|-..+...-... .++++.++....+. .|. .+|..++.--++ .|..+|.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~--------~yle~g~ 294 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVAR--------AYLEAGK 294 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHH--------HHHHcCC
Confidence 5667777777776655433 46777777766531 122 256666543333 8889999
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH-----HhcCCchHHHH
Q 035847 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL-----RHHIQLSTGVG 300 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~-----~~g~~~~~~~~ 300 (523)
+.+|.++-+..++-. +.+...+-.++..++..|+--.+.+-++.+. +.|+..+..++
T Consensus 295 ~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 295 PNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred hHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 999999988877642 2366777789999999999666666555543 34666665444
No 320
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.68 E-value=3.5e+02 Score=27.66 Aligned_cols=138 Identities=10% Similarity=-0.016 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc-----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC--
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG-----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR-- 145 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-- 145 (523)
-|-++..|...|...+|.+..+++...- +-+++...+.-..+.-+.-...+.+...+...-+-+.+++.|.+.
T Consensus 217 In~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Confidence 4667778888888888888887765432 222222222222222111111112222233333444455555432
Q ss_pred ------HHHHHHHhhhc-cccccCchhhHhhHhhhhhhcCCCCCch----hHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 146 ------MEMASGEFEEK-DFSNLSLLKHGKEIHPHHLKKDDLESDL----LVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 146 ------~~~A~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~d~----~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|...|+.. .-+..+.+.....+....... |-.-|. .....+|+-|...|+..+..+.++.+.
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~-g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLP-GDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCC-CcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcC
Confidence 34556666552 111111221111111111111 111111 234678899999999988888888764
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.17 E-value=5.5e+02 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=20.6
Q ss_pred CCCCcchHHHHHHhccCCC--ChHHHHHHHHHHHH
Q 035847 18 PDECTVTYALIFQRCPKLN--NLELGIQVHAHLIV 50 (523)
Q Consensus 18 ~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~ 50 (523)
..|+ .-.-.+|.++++.+ .++.+.+....+..
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3556 44556777787776 67777776666654
No 322
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=45.00 E-value=72 Score=26.27 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH
Q 035847 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li 191 (523)
+.+.-++......+.|++.+-.+-++++-+-+++..|.++|+. +|. .+.+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~-------------------iK~-K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEA-------------------IKD-KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHH-------------------HHH-hcccHHHHHHHHH
Confidence 3445556666667899999999999999999999999999998 766 5555555666555
No 323
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.98 E-value=19 Score=25.59 Aligned_cols=23 Identities=4% Similarity=0.052 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHhhhCC-CCCCcc
Q 035847 1 WVIKNVTLLLQSMDLTN-PDECTV 23 (523)
Q Consensus 1 ~~~~~A~~l~~~m~~~g-~~p~~~ 23 (523)
|-++.|+..|.++...| ++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 88999999999999865 666554
No 324
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=2.9e+02 Score=26.54 Aligned_cols=107 Identities=9% Similarity=-0.001 Sum_probs=62.2
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----------H
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----------V 101 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------l 101 (523)
....+++..+..++.......- .+...--.|...|...|+.+.|..++..+...- -
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~--------------~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP--------------ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc--------------ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3456777777777777765432 234455567788888899999999998877543 1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
|..+.+.....+..++....-. .| |...--.|-..|...|+.+.|+..+-.
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222333333333333333221 34 444444556666677777777665544
No 325
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=44.59 E-value=27 Score=26.03 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHcCCcCCchh
Q 035847 421 SLVHKISEKLMRLYSEIKKIGYMKRIPA 448 (523)
Q Consensus 421 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~ 448 (523)
+...++.+.+++-..+++..|+.||..+
T Consensus 5 ~~li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 5 GDLIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----EEE
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 3455677778888999999999999944
No 326
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.32 E-value=60 Score=24.24 Aligned_cols=43 Identities=7% Similarity=0.180 Sum_probs=34.7
Q ss_pred HHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFM 374 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~ 374 (523)
++|+..|....+...-.|+ -.++.+|+.+|+..|++.+++++-
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988876333333 368889999999999999999883
No 327
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=44.11 E-value=16 Score=24.64 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=17.4
Q ss_pred CchhHHHHHHHHhhhCC-CCCCcc
Q 035847 1 WVIKNVTLLLQSMDLTN-PDECTV 23 (523)
Q Consensus 1 ~~~~~A~~l~~~m~~~g-~~p~~~ 23 (523)
|-++.|+..|..+...| |+|+.+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHhc
Confidence 88999999999998876 666654
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.87 E-value=2e+02 Score=30.53 Aligned_cols=82 Identities=9% Similarity=-0.017 Sum_probs=66.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
-+..-|..|-.+..+.|++..|.+.|..-...+ |+-.+...|+-+....+-....+.| -.|.-.-+|...|++
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDY 737 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCH
Confidence 467889999999999999999999998877766 7777888888776666666666655 235556678889999
Q ss_pred HHHHHHhhh
Q 035847 147 EMASGEFEE 155 (523)
Q Consensus 147 ~~A~~~f~~ 155 (523)
+++.+++.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 999999877
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=42.68 E-value=1.4e+02 Score=27.34 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
-+.-|+.+.+.+++.+|+.+.++=.+.. +.|...-..++..||-.|++++|..-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--------------------------Ptda~~RhflfqLlcvaGdw~kAl~Q 57 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--------------------------PTDAGGRHFLFQLLCVAGDWEKALAQ 57 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--------------------------CccccchhHHHHHHhhcchHHHHHHH
Confidence 3445666666677777766665544432 45777778899999999999999876
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHH
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF 193 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~ 193 (523)
++-++ . +.. ...+-..+|..+|.+
T Consensus 58 l~l~a--~--------------l~p-~~t~~a~lyr~lir~ 81 (273)
T COG4455 58 LNLAA--T--------------LSP-QDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHh--h--------------cCc-ccchHHHHHHHHHHH
Confidence 66510 0 222 345556777777764
No 330
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.76 E-value=59 Score=22.94 Aligned_cols=43 Identities=9% Similarity=0.243 Sum_probs=28.8
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
++..++++.++.. .-|-..--.+|.+|...|++++|.++++++
T Consensus 7 ~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 7 EELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555555543 334445556888999999999999988875
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.47 E-value=4.4e+02 Score=27.58 Aligned_cols=182 Identities=11% Similarity=0.039 Sum_probs=102.4
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
..|.....++|..++........+.+..+|..-|- +-..|-.+...|.++ ..+.-..+++++.+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---------------~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---------------SKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---------------hHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 44777788888888887777778888888887764 667788899999988 66778888887665
Q ss_pred ccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 99 EGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 99 ~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.. -.+...++++.+...+......+..|.-.+.-+....+...-.+++++...--..+.+.-.++...+.+..
T Consensus 127 ~d-------fnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~l 199 (711)
T COG1747 127 YD-------FNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKL 199 (711)
T ss_pred hc-------chhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhh
Confidence 43 11222222222222222222222222222222222222233333333311111111122222222223333
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
|...-.+.+.-+-.-|....++++|.+++..+.+ +|+-.-..+|.
T Consensus 200 g~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 200 GEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 5555666777777888889999999999986653 55555555555
No 332
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=41.43 E-value=68 Score=21.26 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=27.8
Q ss_pred hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 272 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.-+.|.+.++..+++.|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456778899999999999999998888877664
No 333
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=41.35 E-value=49 Score=24.36 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.4
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG 277 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~ 277 (523)
.....|+.+.+.+++++....|..|.......+..+..+.|.
T Consensus 10 ~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 10 DALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 445679999999999999999999988888888777766554
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.06 E-value=2.5e+02 Score=24.75 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=83.4
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhH-HHHHHHHHHhcCChHHHHHHHhcC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV-NNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~-~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.|.+-++ +++.+..++|+.-|.+ +...|...=.+. ---+-......|+...|...|+++
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~-------------------lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTD-------------------LEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHH-------------------HHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3444443 4566788899999988 655454332211 111223456789999999999998
Q ss_pred CC----CChhh-HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHH
Q 035847 211 KQ----KHLVS-WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 211 ~~----~~~~t-~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
.. |-+.- ---|=.+| .+..+|.+++.....+-+-..|-..-...=..|--+-.+.|++..|.+.|
T Consensus 121 a~dt~~P~~~rd~ARlraa~----------lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F 190 (221)
T COG4649 121 AADTSIPQIGRDLARLRAAY----------LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWF 190 (221)
T ss_pred hccCCCcchhhHHHHHHHHH----------HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHH
Confidence 64 32221 11122222 55678988888877776655543333344445555667899999999999
Q ss_pred HHHHHhcCCc
Q 035847 286 GYVLRHHIQL 295 (523)
Q Consensus 286 ~~~~~~g~~~ 295 (523)
.++....-.|
T Consensus 191 ~qia~Da~ap 200 (221)
T COG4649 191 VQIANDAQAP 200 (221)
T ss_pred HHHHccccCc
Confidence 9998754444
No 335
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.68 E-value=1.2e+02 Score=23.96 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=31.4
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc--CChhHHHHHHHHHHHhcCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV--KGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~i~~~~~~~g~~~ 295 (523)
.|...|+.++|..-+.++...... ..+.+ .++..+... ..-+....++..+.+.+.-+
T Consensus 11 ey~~~~d~~ea~~~l~el~~~~~~-~~vv~-~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 11 EYFSSGDVDEAVECLKELKLPSQH-HEVVK-VILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHT-HHHHHHHHHHTT-GGGH-HHHHH-HHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHhcCCCHHHHHHHHHHhCCCccH-HHHHH-HHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 788889999999999887543211 22233 333333333 23345555666666655443
No 336
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.40 E-value=42 Score=32.11 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=34.5
Q ss_pred CChh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH
Q 035847 213 KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269 (523)
Q Consensus 213 ~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 269 (523)
||.. -||.-|. ...+.|++++|+.|++|-++.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~------------~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIK------------QAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 3678888 8889999999999999999988876666665544
No 337
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=40.28 E-value=4.3e+02 Score=27.10 Aligned_cols=26 Identities=8% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
-...|+.-|.-.|++.||.+.+++++
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLg 536 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELG 536 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhC
Confidence 34567788888999999999998854
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=38.57 E-value=72 Score=18.56 Aligned_cols=24 Identities=17% Similarity=0.598 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+|..+-..|...|++++|.+.+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456666777788888888877765
No 339
>PRK00971 glutaminase; Provisional
Probab=37.79 E-value=3.9e+02 Score=25.94 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=22.7
Q ss_pred CCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 346 NMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 346 g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
|+.|. ..+-..+......+|.+|.+=++.-+.++
T Consensus 215 G~~P~tg~~vl~~~~~r~v~s~M~TcGmYD~SG~fa~~VGl 255 (307)
T PRK00971 215 GVSPHTGERVVSPRQARQVNALMLTCGMYDASGEFAYRVGL 255 (307)
T ss_pred CcCCCCCCeecCHHHHHHHHHHHHHcCCccchHHHHHHcCC
Confidence 66663 34445556666678888888888777543
No 340
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.45 E-value=37 Score=23.94 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=22.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
|-.-.=.+|.||.+.|++++|.+...++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344579999999999999999988764
No 341
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.24 E-value=61 Score=31.08 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=35.0
Q ss_pred CCcch-HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHH
Q 035847 68 RNVFS-WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMI 122 (523)
Q Consensus 68 ~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~ 122 (523)
||..+ ||.-|..-.+.|++++|+.+.++-.+.| ...|+++|=..+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG----------~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLG----------STSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------CchHHHHHHHHh
Confidence 45544 6899999999999999999999998887 555666665544
No 342
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=36.85 E-value=63 Score=18.69 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.|..+=..|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566677778888888888877554
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.46 E-value=53 Score=21.40 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=9.7
Q ss_pred HHHHhcCCchHHHHHHHHhh
Q 035847 78 GMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~ 97 (523)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 44444555555555544443
No 344
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=36.31 E-value=5.5e+02 Score=27.25 Aligned_cols=179 Identities=11% Similarity=0.082 Sum_probs=111.4
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 138 (523)
++..+|+.-+.--.+.|+.+.+.-+|+...-.= .++-....|+.+.+..+.....+.- .|+...-..+=.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHH
Confidence 466899999999999999999999998765321 3333444488888887777766653 333333222223
Q ss_pred HHHh-cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHHHH---HHHhcCCC-
Q 035847 139 MFIK-CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAH---CKFSKIKQ- 212 (523)
Q Consensus 139 ~~~~-~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~A~---~vf~~m~~- 212 (523)
.+.. .|++++|..+++. +.. .+ |+. .+-.--+..--+.|+.+.+. .+.....+
T Consensus 374 ~f~e~~~n~~~A~~~lq~-------------------i~~-e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~ 432 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQR-------------------IES-EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG 432 (577)
T ss_pred HHHHhhccHHHHHHHHHH-------------------HHh-hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc
Confidence 3333 4789999998888 555 34 443 23333456666788888887 44433321
Q ss_pred -CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 035847 213 -KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276 (523)
Q Consensus 213 -~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g 276 (523)
.+....+.+..-+++. .+.-.++.+.|..++.+|.+. ..++...|..++.-+...+
T Consensus 433 ~~~~~i~~~l~~~~~r~-------~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 433 KENNGILEKLYVKFARL-------RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred ccCcchhHHHHHHHHHH-------HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2222333333312211 223367889999999999875 5667778888887766554
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=36.03 E-value=1.3e+02 Score=27.51 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC----CCCC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA----EPCN 388 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ 388 (523)
|-+.-|+.+.+.+.+ .+|+...+.-.+. +|+ .-+-..+++.||-.|++++|..-++-. .+.|+.. .+.+
T Consensus 3 Tl~~t~seLL~~~sL--~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSL--QDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccH--HHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 445667788888888 9999988776654 454 556667899999999999998877664 3566555 4555
Q ss_pred HHHHHHHHHHHHhh
Q 035847 389 PDIAEHAARHLFEL 402 (523)
Q Consensus 389 ~~~~~~~~~~l~~~ 402 (523)
.-.++.+-+.+|.-
T Consensus 78 lir~ea~R~evfag 91 (273)
T COG4455 78 LIRCEAARNEVFAG 91 (273)
T ss_pred HHHHHHHHHHHhcc
Confidence 55666666666653
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=35.96 E-value=2.1e+02 Score=29.61 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=64.5
Q ss_pred hHHHHhHHHhhh-----CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHH
Q 035847 296 STGVGIALISIQ-----GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDT 370 (523)
Q Consensus 296 ~~~~~~~li~~y-----~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A 370 (523)
|...-+.++..| ...-|+..|..-|.-+-+.+.. .+.-.+|..|...|+-.|+...|++.= .|-..-.++-|
T Consensus 83 d~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~--~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~sa 159 (568)
T KOG2396|consen 83 DDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY--GEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESA 159 (568)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHH
Confidence 333444444444 3355889999999888888878 899999999999889999998887643 44445558899
Q ss_pred HHHHHh-CCCCCCCC
Q 035847 371 LNFMKK-MPFEPSSA 384 (523)
Q Consensus 371 ~~~~~~-m~~~p~~~ 384 (523)
..++.+ +.+.|+++
T Consensus 160 RalflrgLR~npdsp 174 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSP 174 (568)
T ss_pred HHHHHHHhhcCCCCh
Confidence 998755 77888887
No 347
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.79 E-value=4.5e+02 Score=26.12 Aligned_cols=212 Identities=9% Similarity=0.070 Sum_probs=117.7
Q ss_pred CCCcchHHHHHHHHHhcCC---chHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHh----HHHHH
Q 035847 67 ERNVFSWTSMMGMYNVLGY---YEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKR----PVLDM 139 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~ 139 (523)
.|+..+--.+++-|+...+ ..-|-..|-..... +-.++.+.+....+.++....+.. +.|.....+ -++..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~~lc~~-l~~~~~~~~~p~~gi~ii~~av~k-~~~~~~qlT~~H~~l~~~ 149 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFFPLCHD-LTEAVVKKNKPLRGIRIIMQAVDK-MQPSNGQLTSIHADLLQL 149 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHHHHHHH-HHHHHHhcCCccccchHHHHHHHH-hccCccchhhhHHHHHHH
Confidence 3566666666666665433 33344443332221 445555556555555554444433 233332222 23344
Q ss_pred HHhcCCHHHHHHHhhh-------------------------ccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 140 FIKCGRMEMASGEFEE-------------------------KDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
+.+.+++..++..++. +-|-...+++.|..++..++- .|...+-...+.+|
T Consensus 150 ~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~----~Pa~~vs~~hlEaY 225 (422)
T KOG2582|consen 150 CLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT----TPAMAVSHIHLEAY 225 (422)
T ss_pred HHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh----cchhHHHHHHHHHH
Confidence 4444444333333322 366667777777777666542 24444444445555
Q ss_pred Hh--------cCCh--------HHHHHHHhcCCC----------CChhh-HHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 195 AK--------CRYL--------KVAHCKFSKIKQ----------KHLVS-WNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 195 ~k--------~g~~--------~~A~~vf~~m~~----------~~~~t-~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
-| .|++ ..|.+.|+-|.. .|..+ -.++|..... .+.+.++..-|.
T Consensus 226 kkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~--------rF~kDnnt~l~k 297 (422)
T KOG2582|consen 226 KKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSE--------RFTKDNNTGLAK 297 (422)
T ss_pred HHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHH--------HHhhcCcHHHHH
Confidence 43 3554 456667766652 22222 4555543222 566788888899
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH----HhhccCChhHHHHHHHHHHHhc
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLA----ACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.....|..+++.--..||.+|=- -..+++..+++.+..-+|.+.|
T Consensus 298 ~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 298 QAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 99999998888888888887632 2335677778888777777755
No 348
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.78 E-value=2.4e+02 Score=26.21 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=20.5
Q ss_pred hccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
++.+++.+|+++|++.....+.-+..-|.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys 193 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYS 193 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence 45678999999999987765554444443
No 349
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.32 E-value=1.5e+02 Score=26.35 Aligned_cols=52 Identities=12% Similarity=-0.009 Sum_probs=38.6
Q ss_pred ccCCchHHHHHHHHHHh-cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 239 QYGDGETALEFFSRMIQ-TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
...+.+......+...+ ....|+..+|..++.++...|+.++|++...++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444343333 34689999999999999999999999999988876
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.00 E-value=81 Score=30.79 Aligned_cols=109 Identities=20% Similarity=0.192 Sum_probs=67.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.|.+.|.+++|++.|..-.. +.| |.+++..-..||.+...+..|+.=-...+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----------------------- 160 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----------------------- 160 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----------------------
Confidence 88899999999999987554 557 8889888888998888887666544333321
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhc----CCccCHhHHHHHHHHHHhhCCHHHHHHHHH
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY----NMEPAMEQYCCMVDLLARAGQFDDTLNFMK 375 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 375 (523)
=...+.+|.+.+.. .+++.-..+.++.+ .+.|+..- |=..+.+...+.++.-+..
T Consensus 161 -d~~Y~KAYSRR~~A--R~~Lg~~~EAKkD~E~vL~LEP~~~E---LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 161 -DKLYVKAYSRRMQA--RESLGNNMEAKKDCETVLALEPKNIE---LKKSLARINSLRERKIATK 219 (536)
T ss_pred -hHHHHHHHHHHHHH--HHHHhhHHHHHHhHHHHHhhCcccHH---HHHHHHHhcchHhhhHHhh
Confidence 12346777777665 55555554444432 35666322 2233444444444443333
No 351
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.98 E-value=1.1e+02 Score=31.20 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=30.2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
..+.+++-.+++..+.+.| .+| +.+.-|++|.+.++++.|...+++
T Consensus 66 G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~ 111 (480)
T TIGR01503 66 GVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKE 111 (480)
T ss_pred CCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHh
Confidence 3445566666666666554 333 455567888888888888887776
No 352
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.62 E-value=3.8e+02 Score=24.93 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=44.2
Q ss_pred hcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh--cCCCCCH--HHHHHHH
Q 035847 196 KCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ--TDMQPNT--ISLSGVL 269 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~--~g~~p~~--~t~~~ll 269 (523)
-.+.+++|-++|.+-.. +=.-.|+.--.+|++... .+.+.|.-++|-..|-++-. +.+.|.. .....-|
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~-----~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAAD-----LHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAI 100 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 34466777776664321 111245544444443322 44555555555555555543 2233332 2233445
Q ss_pred HHhhccCChhHHHHHHHHHH
Q 035847 270 AACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~ 289 (523)
.-|+..|++..|-..|-.+-
T Consensus 101 eIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 101 EIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHhhhHHHHHHhhhhhHH
Confidence 66777777777666654443
No 353
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=34.15 E-value=3.2e+02 Score=28.15 Aligned_cols=246 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCCCCcchHHH---HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 7 TLLLQSMDLTNPDECTVTYAL---IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 7 ~~l~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
+++.+.+.+.|...|..|-+. |..+| ++--..+...+.+.|..|+ -+|..--++|+-++.+
T Consensus 97 l~vVk~L~~~ga~VN~tT~TNStPLraAC-----fDG~leivKyLvE~gad~~----------IanrhGhTcLmIa~yk- 160 (615)
T KOG0508|consen 97 LEVVKLLLRRGASVNDTTRTNSTPLRAAC-----FDGHLEIVKYLVEHGADPE----------IANRHGHTCLMIACYK- 160 (615)
T ss_pred HHHHHHHHHhcCccccccccCCccHHHHH-----hcchhHHHHHHHHcCCCCc----------ccccCCCeeEEeeecc-
Q ss_pred CCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHH-------------HHHHhcCCCCceeHhHHHHHHHh
Q 035847 84 GYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYD-------------YMISIKFEGNACVKRPVLDMFIK 142 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~-------------~m~~~g~~p~~~~~~~li~~~~~ 142 (523)
|+.+-|..+++.=-.-. .+.-|+..|.++..+-++. -+......--..+.+-|++....
T Consensus 161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~~s 240 (615)
T KOG0508|consen 161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQCETS 240 (615)
T ss_pred CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcCCcc
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-----CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhh
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-----SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVS 217 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-----~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t 217 (523)
...--+|++++-..-.....++-.+...+...|+. ... +...+. ..+-+|..........++=.-...||..-
T Consensus 241 r~~riealEllGat~~dkk~D~~~al~~w~~aMe~-r~~~~e~~~e~e~~-~p~~ay~~~re~~~~~elE~lv~D~d~~R 318 (615)
T KOG0508|consen 241 RESRIEALELLGATYVDKKRDLLGALKYWRRAMEE-RESDGESILEKEPL-EPVLAYGYGREVNNREELEELVEDPDEMR 318 (615)
T ss_pred hhhHHHHHHHhcccccchhHHHHHHHHHHHHHHHh-hhhccccccccCCC-CchhhhhhhhhcCCHHHHHHHhcChHHHH
Q ss_pred HHHHHHhhhhcCCccc---------cchhhccCCchHHHHHHH---HHHhcCCCC-CHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREE---------ITGFTQYGDGETALEFFS---RMIQTDMQP-NTISLSGVLA 270 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~---------i~~~~~~g~~~~A~~lf~---~M~~~g~~p-~~~t~~~ll~ 270 (523)
.-+||---.-.|-..- -..|+.+|+++..+++|+ +|+++.+.| +.-|-+++++
T Consensus 319 mqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~sslls 384 (615)
T KOG0508|consen 319 MQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLS 384 (615)
T ss_pred HHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHH
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=5e+02 Score=28.59 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 137 LDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES---DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 137 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
|+.+.+.+.+++|+.+-+. . .|..| -..++...|+.+.-.|+.++|-.+.-.|-..
T Consensus 363 i~Wll~~k~yeeAl~~~k~-------------------~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKA-------------------S--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHh-------------------c--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 5666777777777777554 1 14444 4568889999999999999999999999888
Q ss_pred ChhhHHHHHHhhhhcCCccccchhh
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFT 238 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~ 238 (523)
+..-|---+.-++..++...|..|.
T Consensus 422 ~~~eWe~~V~~f~e~~~l~~Ia~~l 446 (846)
T KOG2066|consen 422 NAAEWELWVFKFAELDQLTDIAPYL 446 (846)
T ss_pred hHHHHHHHHHHhccccccchhhccC
Confidence 8888988888444444433333333
No 355
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=33.87 E-value=1.4e+02 Score=22.23 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=40.8
Q ss_pred hhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 105 CSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 105 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
+++.|+++..+.+++ .+...+. .+..+...+..|+.+-+..+++. |..++.
T Consensus 4 A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~-----------------------g~~~~~ 54 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNLEIVKLLLEN-----------------------GADINS 54 (89)
T ss_dssp HHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTHHHHHHHHHT-----------------------TTCTT-
T ss_pred HHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCHHHHHHHHHh-----------------------cccccc
Confidence 344455444333333 4444443 33466666777888777777666 555544
Q ss_pred h--HHHHHHHHHHhcCChHHHHHHHhc
Q 035847 185 L--VNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 185 ~--~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
. ...+.+...+..|+.+-+.-+.+.
T Consensus 55 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 81 (89)
T PF12796_consen 55 QDKNGNTALHYAAENGNLEIVKLLLEH 81 (89)
T ss_dssp BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3 222334445667777766666554
No 356
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.74 E-value=3.5e+02 Score=24.26 Aligned_cols=127 Identities=9% Similarity=0.124 Sum_probs=83.1
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCCcchH--------HHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAF--------LGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 27 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--------~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.=+.-|-+.||+..--.+|-.+...--.+..+ ..+.+.-..+..+.|-..-.+-++.-+.+++-+.| +-+
T Consensus 56 ~eie~Ckek~DW~klg~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~--LGR 133 (233)
T PF14669_consen 56 VEIEHCKEKGDWTKLGNLYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL--LGR 133 (233)
T ss_pred HHHHHHhhhccHHHHhhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh--hhH
Confidence 33456667777776666665544321111111 11344444466777888888888877777766555 223
Q ss_pred cc--HHHHhhccCChHHHHHHHHHHHHhcC--------------CCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 99 EG--VYKACSELKDHRVGKDVYDYMISIKF--------------EGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 99 ~g--ll~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
-| ++-.|-+..++..++.+++.|-+..+ .+--..-|.....+.++|.+|.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 33 66677778888888888888876532 23345678888999999999999999987
No 357
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.20 E-value=2.3e+02 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+..+-+++...-.+.|++......|.||-+.+++-.|..+++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555667777778999999999999999999999999999988765
No 358
>PF14044 NETI: NETI protein
Probab=32.80 E-value=32 Score=23.61 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCcCCc
Q 035847 430 LMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 430 l~~l~~~m~~~g~~pd~ 446 (523)
+.+-+.+|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 35678999999999954
No 359
>PHA02878 ankyrin repeat protein; Provisional
Probab=32.07 E-value=5.9e+02 Score=26.32 Aligned_cols=134 Identities=10% Similarity=0.098 Sum_probs=66.0
Q ss_pred HHHHHHHhcCCCCcee---HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHH
Q 035847 117 VYDYMISIKFEGNACV---KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLM 191 (523)
Q Consensus 117 ~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li 191 (523)
+...+.+.|..++... ..+.+...+..|+.+-+..+++. |..++.. ...+.+
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-----------------------gad~n~~d~~g~tpL 205 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY-----------------------GANVNIPDKTNNSPL 205 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHC-----------------------CCCCCCcCCCCCCHH
Confidence 5566666666554332 33455556666776666666554 4433321 122344
Q ss_pred HHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH----
Q 035847 192 DFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS---- 264 (523)
Q Consensus 192 ~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t---- 264 (523)
...++.|+.+-+..+++.-.. +|..-++.|.. +....++ .++.+-+.+.|..++...
T Consensus 206 h~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~------------A~~~~~~----~~iv~~Ll~~gadvn~~~~~~g 269 (477)
T PHA02878 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHI------------SVGYCKD----YDILKLLLEHGVDVNAKSYILG 269 (477)
T ss_pred HHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHH------------HHHhcCC----HHHHHHHHHcCCCCCccCCCCC
Confidence 455666777766666654332 23333444444 3322232 234444555666655432
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
++.|..| .+. .++...+.+.|..++
T Consensus 270 ~TpLh~A---~~~----~~~v~~Ll~~gadin 294 (477)
T PHA02878 270 LTALHSS---IKS----ERKLKLLLEYGADIN 294 (477)
T ss_pred CCHHHHH---ccC----HHHHHHHHHCCCCCC
Confidence 2344444 122 234556666666554
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.93 E-value=1.6e+02 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.-|..|+.-|-..|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3488899999999999999999987765
No 361
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=29.86 E-value=4.7e+02 Score=24.54 Aligned_cols=177 Identities=15% Similarity=0.069 Sum_probs=100.3
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCC----C
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES---DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K 213 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~ 213 (523)
.+.|++++|.+-|+. +.. ...- ...+--.++.++-|.++.+.|...+++... .
T Consensus 45 L~~gn~~~A~~~fe~-------------------l~~-~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 45 LQKGNYEEAIKYFEA-------------------LDS-RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HhcCCHHHHHHHHHH-------------------HHH-cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence 457899999999998 554 2222 344555677888999999999998887642 2
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
.-+-|-.-|.|++..-..+. ...+...+.+-|..|.. +|.-|-++.-...|..-...+...=
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~-----~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~L- 166 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDD-----VTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDAL- 166 (254)
T ss_pred CChhHHHHHHHHHHhccCCc-----cccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHHH-
Confidence 22345555554431111000 12334444444444432 2222222222222222222221100
Q ss_pred CchHHHHhHHHhhhCCCCCcchH-HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVW-NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTL 371 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~-n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~ 371 (523)
.-+ -.+-.-|.+.|.+ .-|..-|+.|.+.|.-++- ...+-.|..+|-+.|..++|.
T Consensus 167 --------------------A~~Em~IaryY~kr~~~--~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 167 --------------------AGHEMAIARYYLKRGAY--VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred --------------------HHHHHHHHHHHHHhcCh--HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHH
Confidence 000 1234678899999 9999999999987543333 356677788888888888887
Q ss_pred HHHHhC
Q 035847 372 NFMKKM 377 (523)
Q Consensus 372 ~~~~~m 377 (523)
+.-.-+
T Consensus 225 ~~~~vl 230 (254)
T COG4105 225 KTAKVL 230 (254)
T ss_pred HHHHHH
Confidence 664444
No 362
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.43 E-value=19 Score=25.72 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.8
Q ss_pred ceEEEeeCCcccccccccccC
Q 035847 499 REIIMIDNYRFHHFVDGACSC 519 (523)
Q Consensus 499 r~i~~~d~~~~h~~~~g~csc 519 (523)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 447889999999999998654
No 363
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=28.20 E-value=54 Score=18.81 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+-.+|.+.|+. ++|.++|++..+.
T Consensus 6 ~a~~~~~~g~~--~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDY--DEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHccCH--HHHHHHHHHHHHH
Confidence 33456667777 8888888888776
No 364
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=28.13 E-value=1.1e+02 Score=31.31 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=20.3
Q ss_pred ChHHHHHHHhcCC--CCChh----------hHHHHHHhhhhcCCc
Q 035847 199 YLKVAHCKFSKIK--QKHLV----------SWNAMLAGYALGGFR 231 (523)
Q Consensus 199 ~~~~A~~vf~~m~--~~~~~----------t~~~li~~~~~~g~~ 231 (523)
.-..-+++|+.++ .|.++ .|+.|..++.++-..
T Consensus 462 k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~ 506 (650)
T KOG4334|consen 462 KQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGW 506 (650)
T ss_pred cchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCC
Confidence 3344567888765 34442 588888866655444
No 365
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.10 E-value=8.5e+02 Score=26.93 Aligned_cols=136 Identities=16% Similarity=0.093 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC 143 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 143 (523)
...|...|..+.-.|++++|-++.-.|.... .+.-++.. +.-..+...+....-..+..+|..++..|..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~---~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~- 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAEL---DQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA- 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccc---cccchhhccCCCCCcccCchHHHHHHHHHHH-
Confidence 3578899999999999999999998887654 11111111 1112222222221112345677777776666
Q ss_pred CCHHHHHHHhhhccccccCchhhHh----hHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGK----EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV 216 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~ 216 (523)
.+...-.++..+ -.+.+-.+. .++.. .++ .-+ +..+--.|...|...+++.+|..++-..+++++.
T Consensus 468 ~~~~~F~e~i~~----Wp~~Lys~l~iisa~~~q-~~q-~Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 468 SDVKGFLELIKE----WPGHLYSVLTIISATEPQ-IKQ-NSE-STALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHHHh----CChhhhhhhHHHhhcchH-HHh-hcc-chhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 222222222222 001110000 01111 111 112 2233344899999999999999999888776654
No 366
>PRK11906 transcriptional regulator; Provisional
Probab=26.71 E-value=7.2e+02 Score=25.63 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHh-cCCCCCHHH-HHHHHHHhhc---------cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCC
Q 035847 242 DGETALEFFSRMIQ-TDMQPNTIS-LSGVLAACAQ---------VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 242 ~~~~A~~lf~~M~~-~g~~p~~~t-~~~ll~a~~~---------~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 310 (523)
..+.|+.+|.+-.. ..+.|+... |..+-.++.. .....+|.+.-....+.+ .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-----------------~ 335 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-----------------T 335 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-----------------C
Confidence 35678889998873 346676433 3322211111 112233333333333321 2
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH-hHHHHHHHHHHhhCCHHHHHHHHHh-CCCCCCC
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-EQYCCMVDLLARAGQFDDTLNFMKK-MPFEPSS 383 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~-m~~~p~~ 383 (523)
-|...-..+-.++...|+. +.|..+|++.. .+.||. .+|...-..+.-+|+.++|.+.+++ +..+|.-
T Consensus 336 ~Da~a~~~~g~~~~~~~~~--~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQA--KVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred CCHHHHHHHHHHHHhhcch--hhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 2334444444444666778 99999999876 457873 4454444555668999999999988 7666643
No 367
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=26.69 E-value=4.1e+02 Score=22.74 Aligned_cols=208 Identities=18% Similarity=0.104 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhCCCCC-CcchHHHHHHhccCCCChHHHHHHHHHHHHh-CCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDE-CTVTYALIFQRCPKLNNLELGIQVHAHLIVC-GVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
...+...+.......... ....+......+...+++..+...+...... .. ......|..+...+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 105 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELL-------------PNLAEALLNLGLLL 105 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc-------------cchHHHHHHHHHHH
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHH-HhhccCChHHHHHHHHHHHHhcC--CCCceeHhHHHHHHHhcCCHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYK-ACSELKDHRVGKDVYDYMISIKF--EGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~-~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~ 148 (523)
...+.+.++.+.+....... ... .+...++.+.+...+.......- ......+......+...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhHHHHHHh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSWNAMLAG 224 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~~~li~~ 224 (523)
|...+.+ ... .... ....+..+-..+...++.+.|...+..... |+ ...+..+..
T Consensus 186 a~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 244 (291)
T COG0457 186 ALELLEK-------------------ALK-LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL- 244 (291)
T ss_pred HHHHHHH-------------------HHh-hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH-
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+...+..+++...+.....
T Consensus 245 -----------~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 245 -----------LLLELGRYEEALEALEKALE 264 (291)
T ss_pred -----------HHHHcCCHHHHHHHHHHHHH
No 368
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.26 E-value=5.9e+02 Score=24.44 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHhcCC----CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 243 GETALEFFSRMIQTDM----QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~----~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
..+|.+.|++....+. ..+...-..++....+.|+.+.-..+++...+ .++..--+.
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-------------------~~~~~~k~~ 206 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-------------------STSPEEKRR 206 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-------------------TSTHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-------------------cCCHHHHHH
Confidence 5678889998887422 34555556677777777776665555555443 234455677
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcC-CccCHhHHHHHHHHHHhhCCH--HHHHHHHHh
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYN-MEPAMEQYCCMVDLLARAGQF--DDTLNFMKK 376 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g-~~p~~~ty~~li~~~~~~g~~--~~A~~~~~~ 376 (523)
++.+++...+. +...++++..... + +.+.. .+ .++.++...+.. +.+.+++.+
T Consensus 207 ~l~aLa~~~d~--~~~~~~l~~~l~~-~~v~~~d-~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 207 LLSALACSPDP--ELLKRLLDLLLSN-DKVRSQD-IR-YVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHTT-S-H--HHHHHHHHHHHCT-STS-TTT-HH-HHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHhhhccCCH--HHHHHHHHHHcCC-cccccHH-HH-HHHHHHhcCChhhHHHHHHHHHH
Confidence 88888888877 7777788777764 3 44444 33 344444434443 778887766
No 369
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.09 E-value=3.3e+02 Score=21.48 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=33.7
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC--ChhHHHHHHHHHHHhcC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK--GFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~i~~~~~~~g~ 293 (523)
.|...++.++|.+-+.++...... ......+|..+...+ .-+...+++..+.+.+.
T Consensus 11 ey~~~~D~~ea~~~l~~L~~~~~~--~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 11 EYLSSGDTDEAVHCLLELKLPEQH--HEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHcCCHHHHHHHHHHhCCCcch--HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 888899999999999998654322 223333444444432 33445555666655443
No 370
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.05 E-value=2.5e+02 Score=20.74 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=38.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+...+. .++.+...+..|+.+-+..+++.-..++. ..++.|.. + +..|+ .++++-+.+
T Consensus 20 ~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~------------A-~~~~~----~~~~~~Ll~ 80 (89)
T PF12796_consen 20 GADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHY------------A-AENGN----LEIVKLLLE 80 (89)
T ss_dssp TSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHH------------H-HHTTH----HHHHHHHHH
T ss_pred cCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHH------------H-HHcCC----HHHHHHHHH
Confidence 544443 33466677788999888888886554433 35666655 3 33443 456666667
Q ss_pred cCCCCCH
Q 035847 256 TDMQPNT 262 (523)
Q Consensus 256 ~g~~p~~ 262 (523)
.|..||.
T Consensus 81 ~g~~~~~ 87 (89)
T PF12796_consen 81 HGADVNI 87 (89)
T ss_dssp TTT-TTS
T ss_pred cCCCCCC
Confidence 7777663
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=25.90 E-value=89 Score=16.71 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
+|..+-..+...|++++|...|....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46666677777788888888776644
No 372
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=25.85 E-value=3.5e+02 Score=25.83 Aligned_cols=81 Identities=7% Similarity=0.038 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHcc------H----HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh--
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEG------V----YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-- 142 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~g------l----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 142 (523)
.=|.+++..+++.+++...-+--+.. + |-.|++.+......++-+.=.+.--.-+..-|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34789999999999887764433222 4 44456888888888777665543223344458888888776
Q ss_pred ---cCCHHHHHHHhhh
Q 035847 143 ---CGRMEMASGEFEE 155 (523)
Q Consensus 143 ---~g~~~~A~~~f~~ 155 (523)
.|.+++|+++...
T Consensus 168 LlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVG 183 (309)
T ss_pred HhccccHHHHHHHHhc
Confidence 5999999998754
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=25.56 E-value=1.3e+02 Score=22.49 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=36.0
Q ss_pred ccCCchHHHHHHHHHHhcCCCCC-H-HHHHHHHHHhhccCChhHHHHH
Q 035847 239 QYGDGETALEFFSRMIQTDMQPN-T-ISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~i 284 (523)
...+.++|+..|+...+.-..|. . .++..++.|++.-|+.+++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778899999998877544433 2 5788899999999998887765
No 374
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=25.54 E-value=33 Score=34.70 Aligned_cols=126 Identities=17% Similarity=0.128 Sum_probs=75.0
Q ss_pred CCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhC-C--------------CcchHHHHhcCCC--CCCc---------
Q 035847 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG-V--------------ELCAFLGMFEKMP--ERNV--------- 70 (523)
Q Consensus 17 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~--------------~~~~~~~~f~~~~--~~~~--------- 70 (523)
|+.||.++|.+=..+--+.-....|+.-++-++-.- . .-..++.+|+.+. .|++
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~ 489 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAI 489 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCC
Confidence 567777777655444434444555665555443110 0 0112223787654 3433
Q ss_pred -chHHHHHHHHHhcCCchHHHHHHHHhhHcc-----HHHHhhc------cCChHHHHHHHHHHHHhcCCCCceeHhHHHH
Q 035847 71 -FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----VYKACSE------LKDHRVGKDVYDYMISIKFEGNACVKRPVLD 138 (523)
Q Consensus 71 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----ll~~~~~------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 138 (523)
.-|++|..++.++-.+.+ +.+=.+|...+ ++-+|.+ ......+.++-.+-+-.-+.|...+|.+|++
T Consensus 490 psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLr 568 (650)
T KOG4334|consen 490 PSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLR 568 (650)
T ss_pred CCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHH
Confidence 358888888888766542 22233454444 4444433 2356677887777766668999999999999
Q ss_pred HHHhc
Q 035847 139 MFIKC 143 (523)
Q Consensus 139 ~~~~~ 143 (523)
+|.+.
T Consensus 569 iYGr~ 573 (650)
T KOG4334|consen 569 IYGRL 573 (650)
T ss_pred Hhhhh
Confidence 99987
No 375
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=25.32 E-value=80 Score=30.80 Aligned_cols=31 Identities=6% Similarity=-0.152 Sum_probs=20.6
Q ss_pred HHhHHHhhh--CC--CC-CcchHHHHHHHHHhcCCC
Q 035847 299 VGIALISIQ--GL--GT-GSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 299 ~~~~li~~y--~~--~p-~~~~~n~li~~~~~~g~~ 329 (523)
-|+--|++| +| .| |.+++..=..+|.+..++
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F 147 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF 147 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH
Confidence 466677777 44 45 777777777777776665
No 376
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.90 E-value=8.2e+02 Score=25.76 Aligned_cols=196 Identities=6% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCc----
Q 035847 11 QSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY---- 86 (523)
Q Consensus 11 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~---- 86 (523)
......|..||..-.+. +.....+..+.+.+......+.....+.++|+...-+...+|.|+..+-.-...
T Consensus 88 C~~i~~~~h~Dv~eida-----as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 88 CISFNNHNHPDIIEIDA-----ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFI 162 (507)
T ss_pred HHHHhcCCCCcEEEeec-----cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEE
Q ss_pred ---hHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCc
Q 035847 87 ---EEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163 (523)
Q Consensus 87 ---~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 163 (523)
.+.-.+...+.+....--+.....-+....+-..+.+.|+..+......++. .-.|++..|...+++
T Consensus 163 ~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s~GslR~al~~Ldk-------- 232 (507)
T PRK06645 163 FATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY--KSEGSARDAVSILDQ-------- 232 (507)
T ss_pred EEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHH--------
Q ss_pred hhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
++..+...+..-....+-+.+...+....-.|+. +..+ |+.
T Consensus 233 --------------------------ai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~------------ai~~-~d~ 273 (507)
T PRK06645 233 --------------------------AASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE------------YIIH-RET 273 (507)
T ss_pred --------------------------HHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH------------HHHc-CCH
Q ss_pred hHHHHHHHHHHhcCCCC
Q 035847 244 ETALEFFSRMIQTDMQP 260 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p 260 (523)
.+|+.+++++...|..|
T Consensus 274 ~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 274 EKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHHHHHHHcCCCH
No 377
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=24.84 E-value=7.7e+02 Score=25.30 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=0.0
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
+...+++|+++-++-...|.. ...|-+..|-+++.++.++|+.||..+ |..+..-
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p-------------~SIgl~GNaaei~~~l~~r~~~pD~vt------------DQTsaHd 269 (561)
T COG2987 215 IAETLDEALALAEEATAAGEP-------------ISIGLLGNAAEILPELLRRGIRPDLVT------------DQTSAHD 269 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCc-------------eEEEEeccHHHHHHHHHHcCCCCceec------------ccccccC
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC--------------
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA-------------- 384 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-------------- 384 (523)
.+++|+-.|-. .+=..+++.+ |...|..+... ...+.-+|..-|++.+..-=..
T Consensus 270 p~~GY~P~G~s-----~ee~~~lr~~-----d~~~~~~~a~~--sm~~hv~Aml~~q~~G~~~fDYGNnirq~a~d~G~~ 337 (561)
T COG2987 270 PLNGYLPVGYT-----VEEADELREE-----DPDKYRKLARA--SMARHVEAMLAFQDRGVPTFDYGNNIRQVAKDEGVE 337 (561)
T ss_pred cccCcCCCcCC-----HHHHHHHHhh-----CHHHHHHHHHH--HHHHHHHHHHHHHHcCCeeeecchHHHHHHHhcccc
Q ss_pred ----------------------------CCCCHHHHHHHHHHHHhhCCCCCc------------ceeEEEecCCCCchHH
Q 035847 385 ----------------------------EPCNPDIAEHAARHLFELEPLSSG------------KVHSFIAGDTSHSLVH 424 (523)
Q Consensus 385 ----------------------------~~~~~~~~~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~ 424 (523)
..||.+.-.+.-+.+.++-|.|.. .+.-+-+..+-.|..+
T Consensus 338 ~aF~fPgfVpayIrPLFc~G~GPFRW~aLSgdpeDi~~tD~~~~el~p~n~~l~~Wid~A~e~i~fqGlpARIcw~g~ge 417 (561)
T COG2987 338 NAFDFPGFVPAYIRPLFCEGIGPFRWVALSGDPEDIYKTDAAVKELFPDNKHLHRWIDMARERIAFQGLPARICWLGLGE 417 (561)
T ss_pred ccccCCcchHHhhhhhhhcCcCCeeEEEecCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHhcCccccCcceeeecccch
Q ss_pred HHHHHHHHHHHHHHHcC
Q 035847 425 KISEKLMRLYSEIKKIG 441 (523)
Q Consensus 425 ~~~~~l~~l~~~m~~~g 441 (523)
... +--.|.+|.+.|
T Consensus 418 R~r--~gLafNemVr~G 432 (561)
T COG2987 418 RAR--IGLAFNEMVRNG 432 (561)
T ss_pred HHH--HHHHHHHHHhcC
No 378
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.99 E-value=2.7e+02 Score=24.21 Aligned_cols=43 Identities=7% Similarity=-0.012 Sum_probs=23.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF 278 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~ 278 (523)
.+...+..-.|.++++.+.+.+..++..|.--.|..+...|-+
T Consensus 34 ~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 34 LMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3333444555666666666666555555544445555555444
No 379
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.98 E-value=2.5e+02 Score=24.95 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=10.9
Q ss_pred HHHHHHhcCCHHHHHHHhhh
Q 035847 136 VLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~ 155 (523)
.+-.|.+.|.++.|.++++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr 136 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKR 136 (200)
T ss_pred HHHHHHhcCchHHHHHHHHH
Confidence 34445555555555555555
No 380
>PRK11619 lytic murein transglycosylase; Provisional
Probab=23.81 E-value=9.7e+02 Score=26.13 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+.--+..-.+.+++ +.+...+..|... ..-...-.-=+-+++...|+.++|..++++.
T Consensus 314 ~~e~r~r~Al~~~dw--~~~~~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 314 LLERRVRMALGTGDR--RGLNTWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344445555578888 8888888888664 2223333334556666679999999998887
No 381
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.75 E-value=8.5e+02 Score=25.44 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=64.2
Q ss_pred HHHHHHHHH-HhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 245 TALEFFSRM-IQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 245 ~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
+..+.++.. ...|+..+......+. -...|++..|..+++++...+ ....++..+.+..|+. +......++++.
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~~-~~~~~~~l~~si 258 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGYH-GIEFLTSFIKSL 258 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 334444444 3468877777776664 335699999999998876532 1123344444444443 444556677776
Q ss_pred HhcCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
...+.. ..|+.++++|.+. |..|...
T Consensus 259 ~~~d~~--~~al~~l~~l~~~-G~d~~~~ 284 (484)
T PRK14956 259 IDPDNH--SKSLEILESLYQE-GQDIYKF 284 (484)
T ss_pred HcCCcH--HHHHHHHHHHHHc-CCCHHHH
Confidence 666555 6899999999987 9888754
No 382
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.64 E-value=3.3e+02 Score=29.34 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=46.6
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch----HHHHHHHHHhH
Q 035847 267 GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK----NEGWRYFEMMK 342 (523)
Q Consensus 267 ~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~----~~a~~~~~~m~ 342 (523)
+|+.||...|++-.+.++++-.....-.. +.=...||.-|..+.+.|.++- +.|.++++..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~--------------k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a- 97 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGD--------------KILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA- 97 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCC--------------eeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-
Confidence 89999999999999999988877642111 1123456777777777776522 2222222222
Q ss_pred HhcCCccCHhHHHHHHHH
Q 035847 343 KEYNMEPAMEQYCCMVDL 360 (523)
Q Consensus 343 ~~~g~~p~~~ty~~li~~ 360 (523)
.+.-|..||..|+.+
T Consensus 98 ---~ln~d~~t~all~~~ 112 (1117)
T COG5108 98 ---RLNGDSLTYALLCQA 112 (1117)
T ss_pred ---hcCCcchHHHHHHHh
Confidence 345566677666544
No 383
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.54 E-value=7.8e+02 Score=24.95 Aligned_cols=117 Identities=8% Similarity=0.050 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHh---cCC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC--CCCCcchHH
Q 035847 244 ETALEFFSRMIQ---TDM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--LGTGSFVWN 317 (523)
Q Consensus 244 ~~A~~lf~~M~~---~g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~p~~~~~n 317 (523)
++...+++.... .|+ ..+......++..+ .|++..+..+++.+...+-..+......++.... ...+...+-
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Confidence 445555555432 243 45555555555443 6888888888877655432333333333332211 123334456
Q ss_pred HHHHHHHh---cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 318 SLIDMYGR---CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 318 ~li~~~~~---~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
.+++++.+ ..+. +.|+.++..|.+. |..|....-..++.++-.-|
T Consensus 232 ~~isa~~ks~rgsd~--~aal~~l~~~l~~-G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 232 DLISALHKSIRGSDP--DAALYYLARMLEA-GEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHhcCCH--HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhhc
Confidence 66777766 3677 8999999999987 98888666655555554444
No 384
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.49 E-value=4.9e+02 Score=26.40 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=17.9
Q ss_pred chhHHHHHHHHhhhCCCCCC----cchHHHHHHhccCC
Q 035847 2 VIKNVTLLLQSMDLTNPDEC----TVTYALIFQRCPKL 35 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~~~~~~ 35 (523)
..++|++.|.++.++++--. .+||+.+-..|...
T Consensus 146 l~eka~~~~~~ll~~~~~~~~t~~Vvt~nef~tlc~~~ 183 (439)
T KOG2911|consen 146 LKEKALDVYAELLHEEVLSECTGAVVTLNEFQTLCSNL 183 (439)
T ss_pred HHHHHHHHHHHHHhhhhhhccCceeeeHHHHHHHhccC
Confidence 34566666655555543222 45666666655544
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.38 E-value=9e+02 Score=26.33 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC------CChhhHHHHHHhhhhcCCccccchhhccCCchH--HHHHHH-HHHhcCCC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ------KHLVSWNAMLAGYALGGFREEITGFTQYGDGET--ALEFFS-RMIQTDMQ 259 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~------~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~--A~~lf~-~M~~~g~~ 259 (523)
+|+.+|...|++-.+.++++..-. .=+..||..|. ...++|.++- .++-.. .+++..+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~------------~~~q~~sf~l~~~~~~~~~~lq~a~ln 100 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIR------------EIIQRGSFELTDVLSNAKELLQQARLN 100 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHH------------HHHhcCCccHHHHHHHHHHHHHHhhcC
Confidence 899999999999999999987653 22357888888 7777776532 222222 23344577
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 260 PNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 260 p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
-|..||..|+.+-.+.-.-..+.-++..++.
T Consensus 101 ~d~~t~all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 101 GDSLTYALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred CcchHHHHHHHhhcChHhHHhccHHHHHHHH
Confidence 7999999998887665444555555544444
No 386
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.89 E-value=6.8e+02 Score=23.99 Aligned_cols=70 Identities=7% Similarity=-0.032 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC-C
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD-M 258 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g-~ 258 (523)
..+.....+++....+.|+.+.-..+++.... ++..--+.++. +.+-..+.+...++++.....+ +
T Consensus 166 ~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~------------aLa~~~d~~~~~~~l~~~l~~~~v 233 (324)
T PF11838_consen 166 SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLS------------ALACSPDPELLKRLLDLLLSNDKV 233 (324)
T ss_dssp TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHH------------HHTT-S-HHHHHHHHHHHHCTSTS
T ss_pred ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHH------------hhhccCCHHHHHHHHHHHcCCccc
Confidence 34555667777888888887776677766654 45666788888 7777777877788888887754 5
Q ss_pred CCCH
Q 035847 259 QPNT 262 (523)
Q Consensus 259 ~p~~ 262 (523)
++..
T Consensus 234 ~~~d 237 (324)
T PF11838_consen 234 RSQD 237 (324)
T ss_dssp -TTT
T ss_pred ccHH
Confidence 5544
No 387
>COG5210 GTPase-activating protein [General function prediction only]
Probab=22.74 E-value=8.3e+02 Score=25.58 Aligned_cols=61 Identities=7% Similarity=0.131 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh
Q 035847 247 LEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 247 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 307 (523)
=++++.|+..|+.+..+++..++..+.+.-.++.+..+++.+.-.|......++.+++...
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~ 422 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL 422 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4688889999999999999999999999999999999999999988887777776666544
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.68 E-value=5.7e+02 Score=24.56 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc-----------------HHHHhhccCChHHHHHHH----HHHHHhcCCCCceeHhH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG-----------------VYKACSELKDHRVGKDVY----DYMISIKFEGNACVKRP 135 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g-----------------ll~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~ 135 (523)
-+..++.+++++|+..+.+....| +...|.+.|+.....++. +.|....-+..+-+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344566778888888888887776 455555566544333222 22222222223444555
Q ss_pred HHHHHHhc-CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 136 VLDMFIKC-GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 136 li~~~~~~-g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
||..+... ..+++...+... ..+.|..--..+++ ...-.-+|..+-+.|...+|..+.+.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~-------~iewA~rEkr~fLr-------~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTA-------LIEWADREKRKFLR-------LELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 55555443 335555555444 11111111111111 22334678888899999888876543
No 389
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.68 E-value=91 Score=20.49 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=11.5
Q ss_pred HHHHHHHHHcCCcCC
Q 035847 431 MRLYSEIKKIGYMKR 445 (523)
Q Consensus 431 ~~l~~~m~~~g~~pd 445 (523)
+++.+-+.+.||.||
T Consensus 32 ~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 32 ERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHCCCCC
Confidence 467788889999997
No 390
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=21.75 E-value=32 Score=23.75 Aligned_cols=15 Identities=27% Similarity=0.773 Sum_probs=11.1
Q ss_pred ccccCCCchhhHhHh
Q 035847 476 LRMCGDCHSPTKYVS 490 (523)
Q Consensus 476 l~~~~d~h~~~~~~s 490 (523)
.-+|||||.-..+=+
T Consensus 20 iYiCgdC~~en~lk~ 34 (62)
T KOG3507|consen 20 IYICGDCGQENTLKR 34 (62)
T ss_pred EEEeccccccccccC
Confidence 468999998766544
No 391
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=21.63 E-value=7.7e+02 Score=25.98 Aligned_cols=100 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred hHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHH
Q 035847 244 ETALEFFSRMI-QTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM 322 (523)
Q Consensus 244 ~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~ 322 (523)
++....++... +.|+.-+...+..+ +-...|.+..+..+++++...|- +..+....-++.|..++....+.+ .+
T Consensus 181 ~~I~~~L~~i~~~E~I~~e~~aL~~i--a~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~-~~ 255 (515)
T COG2812 181 EEIAKHLAAILDKEGINIEEDALSLI--ARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLL-EA 255 (515)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHH--HHHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHH-HH
Confidence 44555555554 47888888877766 55578999999999999998764 444555555555665544444332 22
Q ss_pred HHhcCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 323 ~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
. ..++. .+++..++.+.+. |..|...
T Consensus 256 i-~~~d~--~~~~~~~~~l~~~-G~~~~~~ 281 (515)
T COG2812 256 I-LKGDA--KEALRLINELIEE-GKDPEAF 281 (515)
T ss_pred H-HccCH--HHHHHHHHHHHHh-CcCHHHH
Confidence 2 34566 8899999999887 8887753
No 392
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.60 E-value=8.9e+02 Score=25.52 Aligned_cols=105 Identities=5% Similarity=-0.014 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
+-...+-+.+.+.|+..+......++.... |++..|..+++++...| ....+...+-.+.|..+....+. |+++.
T Consensus 182 ~i~~~l~~il~~egi~~~~~al~~ia~~s~--GslR~al~lLdq~ia~~--~~~It~~~V~~~lg~~~~~~i~~-ll~al 256 (509)
T PRK14958 182 QIAAHCQHLLKEENVEFENAALDLLARAAN--GSVRDALSLLDQSIAYG--NGKVLIADVKTMLGTIEPLLLFD-ILEAL 256 (509)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHCCCCHHHHHH-HHHHH
Q ss_pred HhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 324 GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
.. |+. +.+..+++.|... |..|.......+
T Consensus 257 ~~-~d~--~~~l~~~~~l~~~-g~~~~~il~~l~ 286 (509)
T PRK14958 257 AA-KAG--DRLLGCVTRLVEQ-GVDFSNALADLL 286 (509)
T ss_pred Hc-CCH--HHHHHHHHHHHHc-CCCHHHHHHHHH
No 393
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.51 E-value=1.9e+02 Score=23.02 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=33.9
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChh
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFK 279 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~ 279 (523)
.+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-+.
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555667789999999999888888888777777777777653
No 394
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=21.23 E-value=6e+02 Score=25.38 Aligned_cols=55 Identities=11% Similarity=-0.059 Sum_probs=30.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCC-----CCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFE-----GNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-.+....+.++.+.+-|+...+..-. ....+|-+|-..|.+..+.++|.-+..+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~k 187 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCK 187 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHh
Confidence 333444445556666655555443211 1344677777777777777777666555
No 395
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=20.66 E-value=1.8e+02 Score=24.70 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=30.8
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC--CccCH
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN--MEPAM 351 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g--~~p~~ 351 (523)
..++.-+|+..+.....++.++..-.+++++++| +.|..
T Consensus 84 ~~~fe~ild~ia~~~g~~~~evv~~in~~q~~~~~~l~~e~ 124 (144)
T PF09999_consen 84 RDPFERILDYIAAKTGIEKQEVVAEINELQEELGGLLDPEA 124 (144)
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCHHH
Confidence 5678999999999666666888888899988887 55544
No 396
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.63 E-value=2e+02 Score=26.13 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=52.8
Q ss_pred chHHHHHHHHhhHcc-----------------HHHHhhccC---------ChHHHHHHHHHHHHhcCCC-CceeHhHHHH
Q 035847 86 YEEIVNLFYLLIDEG-----------------VYKACSELK---------DHRVGKDVYDYMISIKFEG-NACVKRPVLD 138 (523)
Q Consensus 86 ~~~A~~l~~~m~~~g-----------------ll~~~~~~~---------~~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 138 (523)
.+.|+.++.+|--.. +.++|++.| +++.-.+++...++.|++. =+.+|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 466777777775443 888998876 4566788888888888643 4678999998
Q ss_pred HHHhcCCHHHHHHHhhh
Q 035847 139 MFIKCGRMEMASGEFEE 155 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~ 155 (523)
--.-.-++++..++|..
T Consensus 217 k~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAI 233 (236)
T ss_pred cccCCCCHHHHHHHHHH
Confidence 77767778888888876
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=20.56 E-value=1.2e+03 Score=26.16 Aligned_cols=156 Identities=12% Similarity=0.085 Sum_probs=79.1
Q ss_pred cCChHHHHHHHhcCC----C----CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH-
Q 035847 197 CRYLKVAHCKFSKIK----Q----KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG- 267 (523)
Q Consensus 197 ~g~~~~A~~vf~~m~----~----~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~- 267 (523)
.|++++|.++-+... + ..++.+.++-. +..-.|++++|..+..+-.+.--+-+...|..
T Consensus 471 ~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~------------a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 471 RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE------------AAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH------------HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 577788777655432 2 45566666666 77778999999888776655422233333322
Q ss_pred --HHH--HhhccCChhHHHHH--HHHHHHhcCCchHHHHhHHHhhhCC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 268 --VLA--ACAQVKGFKLGKEI--HGYVLRHHIQLSTGVGIALISIQGL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 268 --ll~--a~~~~g~~~~a~~i--~~~~~~~g~~~~~~~~~~li~~y~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+.. -+-..|....+.+. +.........- . .+ .+-.-++..+..++.+...- ..++..-++-
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q-~----------~~~~f~~~~r~~ll~~~~r~~~~-~~ear~~~~~ 606 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ-K----------PRHEFLVRIRAQLLRAWLRLDLA-EAEARLGIEV 606 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh-c----------ccchhHHHHHHHHHHHHHHHhhh-hHHhhhcchh
Confidence 221 13334532222222 22222110000 0 11 12234455566666663221 0222222222
Q ss_pred hHHhcCCccCHhHHH--HHHHHHHhhCCHHHHHHHHHhC
Q 035847 341 MKKEYNMEPAMEQYC--CMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 341 m~~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~~~~~m 377 (523)
- ..+...|-...+. +|.......|++++|...+.++
T Consensus 607 ~-~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 607 G-SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred h-hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2223334344444 7778888899999999998886
No 398
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=20.36 E-value=4.1e+02 Score=26.11 Aligned_cols=84 Identities=13% Similarity=0.066 Sum_probs=48.2
Q ss_pred hcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCC-hhhHHHHHHhhhhcCCccc--cchhhccCCchHHHHHH
Q 035847 176 KKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKH-LVSWNAMLAGYALGGFREE--ITGFTQYGDGETALEFF 250 (523)
Q Consensus 176 ~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~-~~t~~~li~~~~~~g~~~~--i~~~~~~g~~~~A~~lf 250 (523)
+..|+..+..+.+.|+..+. |++..+..-++.+. .+| .++...+-...+.....+. +..+...|+..+|+.++
T Consensus 154 ~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~l 231 (334)
T COG1466 154 KELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRLL 231 (334)
T ss_pred HHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHHH
Confidence 33488888888888887776 77776666555542 111 2222222221111111111 22445578888888888
Q ss_pred HHHHhcCCCCC
Q 035847 251 SRMIQTDMQPN 261 (523)
Q Consensus 251 ~~M~~~g~~p~ 261 (523)
+++...|..|=
T Consensus 232 ~~L~~~ge~p~ 242 (334)
T COG1466 232 RDLLLEGEEPL 242 (334)
T ss_pred HHHHHcCCcHH
Confidence 88888887653
No 399
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.26 E-value=6.1e+02 Score=22.80 Aligned_cols=17 Identities=6% Similarity=-0.005 Sum_probs=13.2
Q ss_pred hcCChHHHHHHHhcCCC
Q 035847 196 KCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~ 212 (523)
+.|+++.|.+.++-|..
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 56888888888887754
Done!