Query 035847
Match_columns 523
No_of_seqs 440 out of 3933
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:31:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.1E-31 7.1E-36 275.6 18.0 202 113-364 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.7E-31 1.9E-35 272.3 20.2 211 5-275 8-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 5.2E-29 1.8E-33 265.1 24.7 366 2-427 99-570 (597)
4 2xpi_A Anaphase-promoting comp 100.0 4.3E-28 1.5E-32 258.0 24.3 403 20-462 82-573 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 9.6E-19 3.3E-23 175.6 33.7 333 2-407 14-373 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.8 5.2E-18 1.8E-22 170.3 30.5 310 2-383 48-372 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-19 5.6E-24 192.2 11.3 132 216-377 128-262 (1134)
8 3spa_A Mtrpol, DNA-directed RN 99.8 2.8E-19 9.4E-24 190.5 9.7 137 179-327 122-286 (1134)
9 2y4t_A DNAJ homolog subfamily 99.8 6.5E-17 2.2E-21 165.3 26.4 304 21-408 25-364 (450)
10 2gw1_A Mitochondrial precursor 99.7 2.3E-16 7.8E-21 163.8 26.5 338 2-408 21-484 (514)
11 2y4t_A DNAJ homolog subfamily 99.7 5.3E-16 1.8E-20 158.4 28.6 290 2-384 41-363 (450)
12 2gw1_A Mitochondrial precursor 99.7 7.6E-15 2.6E-19 152.2 24.4 358 24-431 8-473 (514)
13 3fp2_A TPR repeat-containing p 99.6 3.9E-14 1.3E-18 147.9 22.8 231 163-430 217-485 (537)
14 3hym_B Cell division cycle pro 99.6 4.3E-13 1.5E-17 130.3 27.5 282 17-367 17-321 (330)
15 3ieg_A DNAJ homolog subfamily 99.6 1E-12 3.5E-17 129.1 29.9 293 22-382 3-338 (359)
16 3ieg_A DNAJ homolog subfamily 99.6 9E-13 3.1E-17 129.4 29.3 294 69-407 2-340 (359)
17 1fch_A Peroxisomal targeting s 99.6 1.1E-13 3.6E-18 137.2 20.8 267 69-376 63-355 (368)
18 3hym_B Cell division cycle pro 99.6 2.2E-12 7.6E-17 125.2 29.2 270 67-382 19-302 (330)
19 4eqf_A PEX5-related protein; a 99.6 2E-13 6.7E-18 135.4 20.6 261 69-376 64-352 (365)
20 1b89_A Protein (clathrin heavy 99.5 1.3E-13 4.3E-18 136.9 14.3 292 34-405 15-344 (449)
21 3cv0_A Peroxisome targeting si 99.5 1.1E-12 3.7E-17 127.3 20.8 261 22-377 21-312 (327)
22 4eqf_A PEX5-related protein; a 99.5 2E-12 6.8E-17 128.1 19.8 222 101-377 71-307 (365)
23 3fp2_A TPR repeat-containing p 99.5 3.9E-12 1.3E-16 132.7 21.4 340 23-410 26-415 (537)
24 1b89_A Protein (clathrin heavy 99.4 7.3E-13 2.5E-17 131.4 13.4 252 3-336 19-303 (449)
25 3cv0_A Peroxisome targeting si 99.4 6.7E-12 2.3E-16 121.7 19.9 239 2-288 36-312 (327)
26 1fch_A Peroxisomal targeting s 99.4 8.1E-12 2.8E-16 123.5 19.8 239 3-288 80-356 (368)
27 3mkr_A Coatomer subunit epsilo 99.4 2.6E-11 8.7E-16 116.5 22.0 246 77-383 6-268 (291)
28 3mkr_A Coatomer subunit epsilo 99.4 4E-11 1.4E-15 115.1 20.7 264 34-372 11-286 (291)
29 2xm6_A Protein corresponding t 99.2 3.1E-08 1E-12 102.3 34.7 317 4-404 60-434 (490)
30 2ho1_A Type 4 fimbrial biogene 99.2 1.3E-09 4.5E-14 101.4 21.0 197 70-344 37-238 (252)
31 2vq2_A PILW, putative fimbrial 99.2 1E-09 3.5E-14 99.8 19.6 198 69-343 7-210 (225)
32 2ooe_A Cleavage stimulation fa 99.2 5.6E-09 1.9E-13 109.0 27.4 355 21-426 12-482 (530)
33 1xnf_A Lipoprotein NLPI; TPR, 99.2 1.3E-10 4.4E-15 109.7 13.4 254 31-374 14-269 (275)
34 2ho1_A Type 4 fimbrial biogene 99.2 1.5E-09 5.2E-14 101.0 19.1 195 130-377 37-235 (252)
35 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.8E-10 1.3E-14 106.4 15.0 215 3-291 21-244 (275)
36 2vq2_A PILW, putative fimbrial 99.2 1.9E-09 6.5E-14 98.0 18.5 197 129-377 7-208 (225)
37 3uq3_A Heat shock protein STI1 99.2 4.8E-10 1.6E-14 104.4 14.8 209 2-290 20-235 (258)
38 1xi4_A Clathrin heavy chain; a 99.1 4.9E-09 1.7E-13 115.9 24.4 236 18-288 983-1247(1630)
39 3u4t_A TPR repeat-containing p 99.1 3.5E-09 1.2E-13 99.6 20.7 227 73-377 6-247 (272)
40 3uq3_A Heat shock protein STI1 99.1 1.7E-09 5.9E-14 100.6 18.3 209 107-377 17-233 (258)
41 2ooe_A Cleavage stimulation fa 99.1 2.6E-08 8.9E-13 103.9 29.2 339 3-377 28-489 (530)
42 2pl2_A Hypothetical conserved 99.1 9.1E-10 3.1E-14 100.6 15.8 195 68-342 3-212 (217)
43 2xm6_A Protein corresponding t 99.1 8.4E-08 2.9E-12 99.0 32.4 335 21-442 38-434 (490)
44 4g1t_A Interferon-induced prot 99.1 2.8E-09 9.6E-14 109.2 20.5 345 19-426 48-449 (472)
45 2q7f_A YRRB protein; TPR, prot 99.1 1.3E-09 4.6E-14 100.5 16.5 199 21-292 22-223 (243)
46 2q7f_A YRRB protein; TPR, prot 99.1 1.1E-09 3.6E-14 101.2 15.3 200 67-344 20-222 (243)
47 2pl2_A Hypothetical conserved 99.1 4.1E-09 1.4E-13 96.2 17.1 194 127-377 2-211 (217)
48 3u4t_A TPR repeat-containing p 99.0 2.7E-08 9.1E-13 93.5 21.7 222 24-292 5-251 (272)
49 1xi4_A Clathrin heavy chain; a 99.0 4.3E-08 1.5E-12 108.5 25.1 256 69-377 1104-1381(1630)
50 4a1s_A PINS, partner of inscut 99.0 5.2E-09 1.8E-13 105.0 17.0 277 27-377 53-369 (411)
51 3ro2_A PINS homolog, G-protein 99.0 9.3E-09 3.2E-13 99.3 17.4 277 27-377 10-329 (338)
52 2ond_A Cleavage stimulation fa 99.0 8.8E-08 3E-12 92.4 24.0 212 113-377 34-267 (308)
53 3sf4_A G-protein-signaling mod 99.0 6.7E-09 2.3E-13 103.6 16.6 271 68-377 7-333 (406)
54 2h6f_A Protein farnesyltransfe 99.0 2.4E-08 8.3E-13 99.3 20.3 227 70-377 97-344 (382)
55 1ouv_A Conserved hypothetical 99.0 9.9E-08 3.4E-12 90.0 23.2 183 69-291 5-215 (273)
56 1ouv_A Conserved hypothetical 99.0 1.2E-07 4.3E-12 89.3 23.3 217 21-293 5-253 (273)
57 3sf4_A G-protein-signaling mod 98.9 5.4E-08 1.8E-12 97.0 20.9 297 20-368 7-364 (406)
58 2ond_A Cleavage stimulation fa 98.9 9.7E-08 3.3E-12 92.1 21.9 223 39-344 33-270 (308)
59 3nf1_A KLC 1, kinesin light ch 98.9 8.6E-09 2.9E-13 98.7 13.4 254 69-377 26-304 (311)
60 2h6f_A Protein farnesyltransfe 98.9 1.6E-07 5.6E-12 93.3 20.3 219 23-290 98-347 (382)
61 3ro2_A PINS homolog, G-protein 98.8 4.4E-08 1.5E-12 94.4 14.0 253 2-291 20-332 (338)
62 3ulq_A Response regulator aspa 98.8 1.9E-07 6.3E-12 92.9 18.4 230 104-377 112-365 (383)
63 3as5_A MAMA; tetratricopeptide 98.8 9.5E-08 3.3E-12 83.5 14.5 163 70-291 8-173 (186)
64 3vtx_A MAMA; tetratricopeptide 98.8 1.7E-07 5.8E-12 82.5 16.1 164 69-291 4-170 (184)
65 3vtx_A MAMA; tetratricopeptide 98.8 1.3E-07 4.5E-12 83.3 14.9 170 21-264 4-176 (184)
66 4a1s_A PINS, partner of inscut 98.8 4.7E-08 1.6E-12 97.9 13.3 271 2-344 63-372 (411)
67 3nf1_A KLC 1, kinesin light ch 98.8 2.8E-08 9.7E-13 95.0 11.2 246 21-291 26-307 (311)
68 3as5_A MAMA; tetratricopeptide 98.8 9E-07 3.1E-11 77.1 19.7 160 184-377 8-170 (186)
69 4abn_A Tetratricopeptide repea 98.7 1.3E-07 4.6E-12 97.1 15.4 190 22-286 102-316 (474)
70 4abn_A Tetratricopeptide repea 98.7 2.2E-07 7.5E-12 95.5 16.6 214 111-377 84-318 (474)
71 4g1t_A Interferon-induced prot 98.7 4.6E-07 1.6E-11 92.5 18.9 296 3-376 110-455 (472)
72 3edt_B KLC 2, kinesin light ch 98.6 2.7E-07 9.3E-12 86.6 13.3 198 141-376 12-277 (283)
73 2fo7_A Synthetic consensus TPR 98.6 4.2E-07 1.4E-11 74.6 11.9 127 72-256 3-132 (136)
74 1hz4_A MALT regulatory protein 98.6 1E-05 3.6E-10 79.7 24.0 221 31-289 23-280 (373)
75 3q15_A PSP28, response regulat 98.6 4.8E-06 1.7E-10 82.5 21.1 306 18-377 6-362 (378)
76 1hz4_A MALT regulatory protein 98.5 2.2E-05 7.7E-10 77.3 24.5 251 3-290 30-321 (373)
77 3ulq_A Response regulator aspa 98.5 3E-06 1E-10 84.1 17.8 280 80-403 22-369 (383)
78 3edt_B KLC 2, kinesin light ch 98.5 1.1E-06 3.6E-11 82.5 13.7 223 3-255 24-280 (283)
79 4e6h_A MRNA 3'-END-processing 98.5 0.00022 7.5E-09 75.8 31.8 191 185-407 344-575 (679)
80 3e4b_A ALGK; tetratricopeptide 98.5 5.5E-06 1.9E-10 84.4 18.9 294 3-377 19-348 (452)
81 3e4b_A ALGK; tetratricopeptide 98.5 8.7E-06 3E-10 82.9 20.3 294 29-402 10-351 (452)
82 2fo7_A Synthetic consensus TPR 98.5 2.9E-06 1E-10 69.3 13.4 127 132-291 3-132 (136)
83 4gyw_A UDP-N-acetylglucosamine 98.4 2.4E-06 8.2E-11 91.8 15.2 161 69-290 8-173 (723)
84 4gyw_A UDP-N-acetylglucosamine 98.4 2.6E-06 8.9E-11 91.6 14.4 162 21-255 8-173 (723)
85 4i17_A Hypothetical protein; T 98.3 6.3E-06 2.2E-10 75.1 14.0 158 69-278 6-169 (228)
86 4i17_A Hypothetical protein; T 98.3 9.4E-06 3.2E-10 73.9 15.2 191 21-291 6-209 (228)
87 1qqe_A Vesicular transport pro 98.3 8.5E-06 2.9E-10 77.6 14.9 174 85-290 32-227 (292)
88 3q15_A PSP28, response regulat 98.3 2.4E-05 8.1E-10 77.4 18.7 268 71-379 11-331 (378)
89 1qqe_A Vesicular transport pro 98.2 4.5E-05 1.5E-09 72.6 16.5 209 111-377 33-266 (292)
90 3mv2_B Coatomer subunit epsilo 98.1 1.7E-05 5.7E-10 75.4 11.5 158 68-264 98-288 (310)
91 3mv2_B Coatomer subunit epsilo 98.1 7.1E-05 2.4E-09 71.0 15.6 168 181-384 97-287 (310)
92 3qky_A Outer membrane assembly 98.1 0.00029 9.8E-09 65.4 19.8 179 183-376 14-220 (261)
93 2r5s_A Uncharacterized protein 98.1 3.7E-05 1.3E-09 66.9 12.4 161 71-290 7-172 (176)
94 3urz_A Uncharacterized protein 98.0 8.8E-05 3E-09 66.6 14.0 165 30-267 12-195 (208)
95 2pzi_A Probable serine/threoni 98.0 0.00014 4.6E-09 78.1 17.6 163 33-223 402-576 (681)
96 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00038 1.3E-08 62.1 17.4 159 185-376 7-168 (213)
97 2r5s_A Uncharacterized protein 98.0 0.00013 4.4E-09 63.5 13.7 155 186-376 8-169 (176)
98 3qou_A Protein YBBN; thioredox 98.0 9.6E-05 3.3E-09 70.1 13.8 156 21-209 116-280 (287)
99 3qou_A Protein YBBN; thioredox 97.9 0.00025 8.6E-09 67.2 16.5 167 127-342 114-282 (287)
100 2pzi_A Probable serine/threoni 97.9 0.00014 4.8E-09 78.0 16.2 181 141-378 402-603 (681)
101 3qky_A Outer membrane assembly 97.9 0.00016 5.3E-09 67.3 14.3 166 69-291 14-224 (261)
102 2ifu_A Gamma-SNAP; membrane fu 97.9 8.4E-05 2.9E-09 71.2 12.5 199 35-289 4-222 (307)
103 2vsy_A XCC0866; transferase, g 97.9 8.7E-05 3E-09 77.8 13.5 130 129-291 22-157 (568)
104 2vsy_A XCC0866; transferase, g 97.9 5.7E-05 2E-09 79.2 11.8 150 35-256 2-157 (568)
105 2yhc_A BAMD, UPF0169 lipoprote 97.9 0.00024 8.3E-09 64.5 14.6 153 70-257 4-214 (225)
106 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00034 1.2E-08 62.4 14.9 124 133-291 9-150 (213)
107 4e6h_A MRNA 3'-END-processing 97.8 0.00094 3.2E-08 70.9 19.7 216 107-362 355-585 (679)
108 3rjv_A Putative SEL1 repeat pr 97.8 0.00086 2.9E-08 60.2 16.6 151 104-294 27-200 (212)
109 1na0_A Designed protein CTPR3; 97.8 0.0001 3.5E-09 59.0 9.2 96 70-211 9-104 (125)
110 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.00063 2.2E-08 61.6 15.6 185 185-384 5-218 (225)
111 1na0_A Designed protein CTPR3; 97.8 0.00032 1.1E-08 56.0 11.8 94 22-155 9-102 (125)
112 3dra_A Protein farnesyltransfe 97.7 0.0048 1.6E-07 58.7 21.6 210 113-377 51-284 (306)
113 4f3v_A ESX-1 secretion system 97.7 0.0011 3.9E-08 61.9 16.8 196 34-305 18-249 (282)
114 2qfc_A PLCR protein; TPR, HTH, 97.7 0.001 3.4E-08 63.0 16.7 158 70-254 75-264 (293)
115 2ifu_A Gamma-SNAP; membrane fu 97.7 0.0007 2.4E-08 64.7 15.7 212 3-284 7-254 (307)
116 3urz_A Uncharacterized protein 97.7 0.00018 6.1E-09 64.5 10.7 121 135-291 59-186 (208)
117 3u3w_A Transcriptional activat 97.7 0.00089 3E-08 63.4 16.0 157 73-255 78-265 (293)
118 1a17_A Serine/threonine protei 97.7 0.00023 7.8E-09 60.5 10.5 129 71-255 14-145 (166)
119 3u3w_A Transcriptional activat 97.7 0.0024 8.2E-08 60.4 18.7 165 187-377 78-263 (293)
120 3gw4_A Uncharacterized protein 97.7 0.00055 1.9E-08 60.4 13.0 157 195-377 3-173 (203)
121 3gw4_A Uncharacterized protein 97.6 0.00046 1.6E-08 60.9 12.1 159 141-344 3-176 (203)
122 3rjv_A Putative SEL1 repeat pr 97.6 0.0014 4.9E-08 58.7 15.1 155 69-258 17-199 (212)
123 1a17_A Serine/threonine protei 97.6 0.0013 4.3E-08 55.7 13.7 119 236-377 22-143 (166)
124 4f3v_A ESX-1 secretion system 97.6 0.00081 2.8E-08 62.9 12.9 134 185-350 103-240 (282)
125 2lni_A Stress-induced-phosphop 97.5 0.00058 2E-08 55.3 10.4 95 21-155 15-109 (133)
126 2lni_A Stress-induced-phosphop 97.5 0.0004 1.4E-08 56.3 8.9 110 68-223 14-126 (133)
127 2vyi_A SGTA protein; chaperone 97.5 0.00079 2.7E-08 54.1 10.6 119 22-200 12-130 (131)
128 2vyi_A SGTA protein; chaperone 97.5 0.00048 1.6E-08 55.5 9.0 109 69-223 11-122 (131)
129 4ga2_A E3 SUMO-protein ligase 97.5 0.00062 2.1E-08 57.4 9.7 137 194-366 7-149 (150)
130 2qfc_A PLCR protein; TPR, HTH, 97.4 0.0032 1.1E-07 59.5 15.8 167 185-376 76-262 (293)
131 3dra_A Protein farnesyltransfe 97.4 0.013 4.4E-07 55.7 19.6 213 4-290 50-286 (306)
132 2e2e_A Formate-dependent nitri 97.4 0.00027 9.2E-09 61.2 7.2 116 108-256 23-144 (177)
133 4ga2_A E3 SUMO-protein ligase 97.4 0.0003 1E-08 59.4 7.0 130 109-274 11-146 (150)
134 2kck_A TPR repeat; tetratricop 97.4 0.00098 3.4E-08 52.0 9.3 97 69-211 5-104 (112)
135 2e2e_A Formate-dependent nitri 97.3 0.00081 2.8E-08 58.1 9.3 120 32-211 20-142 (177)
136 3gyz_A Chaperone protein IPGC; 97.3 0.00073 2.5E-08 57.2 8.2 97 69-211 35-131 (151)
137 2kck_A TPR repeat; tetratricop 97.3 0.0011 3.9E-08 51.6 8.9 97 129-257 5-107 (112)
138 3q7a_A Farnesyltransferase alp 97.3 0.03 1E-06 54.0 20.3 200 129-378 87-329 (349)
139 4gco_A Protein STI-1; structur 97.3 0.0018 6.1E-08 52.7 10.0 92 132-255 15-109 (126)
140 4b4t_Q 26S proteasome regulato 97.2 0.0072 2.5E-07 60.2 16.4 197 31-255 13-244 (434)
141 2c2l_A CHIP, carboxy terminus 97.2 0.0011 3.7E-08 62.5 9.6 181 21-255 3-198 (281)
142 1p5q_A FKBP52, FK506-binding p 97.2 0.001 3.6E-08 64.5 9.3 127 70-255 147-293 (336)
143 2uy1_A Cleavage stimulation fa 97.2 0.026 8.8E-07 57.7 20.2 167 169-377 200-380 (493)
144 3q49_B STIP1 homology and U bo 97.2 0.0023 7.9E-08 52.3 10.2 99 67-211 6-104 (137)
145 3gyz_A Chaperone protein IPGC; 97.2 0.0017 5.9E-08 54.8 9.3 93 23-155 37-129 (151)
146 1elw_A TPR1-domain of HOP; HOP 97.2 0.0019 6.4E-08 50.8 9.1 97 70-212 4-100 (118)
147 1elw_A TPR1-domain of HOP; HOP 97.2 0.0046 1.6E-07 48.4 11.4 94 22-155 4-97 (118)
148 2vgx_A Chaperone SYCD; alterna 97.1 0.0014 4.7E-08 55.1 8.4 97 69-211 20-116 (148)
149 4gco_A Protein STI-1; structur 97.1 0.0032 1.1E-07 51.2 10.0 95 71-211 14-108 (126)
150 1p5q_A FKBP52, FK506-binding p 97.1 0.0047 1.6E-07 59.8 12.9 129 215-377 147-291 (336)
151 2xcb_A PCRH, regulatory protei 97.1 0.0019 6.5E-08 53.6 8.5 96 70-211 18-113 (142)
152 1elr_A TPR2A-domain of HOP; HO 97.1 0.0017 5.9E-08 52.1 8.0 104 131-268 5-118 (131)
153 4b4t_Q 26S proteasome regulato 97.0 0.015 5.1E-07 57.9 16.3 186 78-290 12-244 (434)
154 3ro3_A PINS homolog, G-protein 97.0 0.0056 1.9E-07 51.0 11.2 125 70-209 9-154 (164)
155 3q49_B STIP1 homology and U bo 97.0 0.01 3.5E-07 48.3 12.5 96 20-155 7-102 (137)
156 1elr_A TPR2A-domain of HOP; HO 97.0 0.0028 9.5E-08 50.8 8.6 96 23-155 5-104 (131)
157 3upv_A Heat shock protein STI1 97.0 0.0048 1.6E-07 49.7 10.0 95 71-211 5-99 (126)
158 4gcn_A Protein STI-1; structur 97.0 0.0026 8.9E-08 51.8 8.3 109 132-267 10-121 (127)
159 2vgx_A Chaperone SYCD; alterna 97.0 0.0049 1.7E-07 51.7 10.1 89 236-344 30-118 (148)
160 3sz7_A HSC70 cochaperone (SGT) 97.0 0.003 1E-07 53.7 9.0 97 69-211 10-106 (164)
161 2dba_A Smooth muscle cell asso 96.9 0.0058 2E-07 50.3 10.4 97 68-211 26-126 (148)
162 3ro3_A PINS homolog, G-protein 96.9 0.0065 2.2E-07 50.5 10.8 129 236-377 18-155 (164)
163 3upv_A Heat shock protein STI1 96.9 0.0063 2.2E-07 48.9 10.1 92 132-255 6-100 (126)
164 2xcb_A PCRH, regulatory protei 96.9 0.0049 1.7E-07 51.0 9.3 93 23-155 19-111 (142)
165 2c2l_A CHIP, carboxy terminus 96.8 0.0049 1.7E-07 58.0 9.5 175 183-377 3-196 (281)
166 2fbn_A 70 kDa peptidylprolyl i 96.8 0.0038 1.3E-07 55.0 8.2 94 131-256 89-186 (198)
167 3sz7_A HSC70 cochaperone (SGT) 96.7 0.02 6.9E-07 48.4 12.5 89 236-344 20-108 (164)
168 3n71_A Histone lysine methyltr 96.7 0.011 3.7E-07 60.3 12.1 129 102-255 316-463 (490)
169 3n71_A Histone lysine methyltr 96.7 0.0029 1E-07 64.5 7.9 141 32-211 319-462 (490)
170 2dba_A Smooth muscle cell asso 96.7 0.044 1.5E-06 44.8 14.0 99 213-344 26-128 (148)
171 1hxi_A PEX5, peroxisome target 96.7 0.0054 1.8E-07 49.3 8.0 95 70-211 17-112 (121)
172 1wao_1 Serine/threonine protei 96.7 0.042 1.4E-06 55.9 16.3 116 236-375 15-134 (477)
173 2fbn_A 70 kDa peptidylprolyl i 96.6 0.011 3.8E-07 51.9 10.2 129 24-210 40-183 (198)
174 1wao_1 Serine/threonine protei 96.6 0.0049 1.7E-07 62.9 8.5 120 28-208 12-134 (477)
175 3k9i_A BH0479 protein; putativ 96.5 0.0048 1.7E-07 49.1 6.6 104 239-361 2-107 (117)
176 1hxi_A PEX5, peroxisome target 96.5 0.0093 3.2E-07 47.9 8.0 92 24-155 19-110 (121)
177 4gcn_A Protein STI-1; structur 96.4 0.0095 3.3E-07 48.3 7.8 97 184-292 8-113 (127)
178 3q7a_A Farnesyltransferase alp 96.4 0.11 3.9E-06 49.9 16.4 217 37-290 69-330 (349)
179 2xev_A YBGF; tetratricopeptide 96.4 0.024 8.4E-07 45.3 10.1 60 131-211 40-103 (129)
180 2xev_A YBGF; tetratricopeptide 96.4 0.024 8.2E-07 45.3 10.0 89 135-256 7-105 (129)
181 2l6j_A TPR repeat-containing p 96.3 0.0039 1.3E-07 48.6 4.7 96 69-211 3-105 (111)
182 2uy1_A Cleavage stimulation fa 96.2 0.074 2.5E-06 54.3 14.7 204 5-255 197-412 (493)
183 3k9i_A BH0479 protein; putativ 96.1 0.0042 1.4E-07 49.5 4.0 83 109-211 4-88 (117)
184 2if4_A ATFKBP42; FKBP-like, al 96.1 0.046 1.6E-06 52.8 12.1 111 263-384 180-298 (338)
185 1kt0_A FKBP51, 51 kDa FK506-bi 96.1 0.033 1.1E-06 56.3 11.3 128 24-210 270-412 (457)
186 1kt0_A FKBP51, 51 kDa FK506-bi 96.0 0.059 2E-06 54.4 13.1 118 236-377 277-412 (457)
187 3dss_A Geranylgeranyl transfer 95.9 0.25 8.6E-06 47.2 16.0 189 38-290 90-303 (331)
188 3dss_A Geranylgeranyl transfer 95.8 1 3.4E-05 43.0 19.7 136 181-351 105-271 (331)
189 2if4_A ATFKBP42; FKBP-like, al 95.7 0.043 1.5E-06 53.0 9.9 137 24-211 181-326 (338)
190 3rkv_A Putative peptidylprolyl 95.7 0.037 1.3E-06 46.6 8.5 107 132-263 13-131 (162)
191 1ihg_A Cyclophilin 40; ppiase 95.7 0.065 2.2E-06 52.4 11.1 113 71-205 224-362 (370)
192 3rkv_A Putative peptidylprolyl 95.5 0.044 1.5E-06 46.1 8.1 114 70-211 11-124 (162)
193 1na3_A Designed protein CTPR2; 95.4 0.048 1.7E-06 40.3 7.3 61 69-155 8-68 (91)
194 2kat_A Uncharacterized protein 95.2 0.17 5.7E-06 39.5 10.2 80 4-98 2-81 (115)
195 1ihg_A Cyclophilin 40; ppiase 95.2 0.11 3.8E-06 50.7 10.9 115 236-372 232-362 (370)
196 2l6j_A TPR repeat-containing p 95.1 0.024 8.3E-07 43.8 4.9 95 261-377 3-104 (111)
197 1klx_A Cysteine rich protein B 94.9 0.31 1E-05 39.8 11.5 110 238-377 6-123 (138)
198 3qwp_A SET and MYND domain-con 94.8 0.22 7.6E-06 49.6 12.2 61 315-377 331-397 (429)
199 2kat_A Uncharacterized protein 94.7 0.16 5.5E-06 39.6 8.8 81 244-344 2-82 (115)
200 2hr2_A Hypothetical protein; a 94.7 0.18 6.2E-06 42.4 9.3 104 264-376 13-127 (159)
201 2hr2_A Hypothetical protein; a 94.7 0.033 1.1E-06 46.9 4.8 103 132-255 13-130 (159)
202 3qww_A SET and MYND domain-con 94.6 0.037 1.3E-06 55.3 5.9 60 184-255 340-410 (433)
203 3ma5_A Tetratricopeptide repea 94.6 0.083 2.8E-06 40.4 6.6 61 69-155 6-66 (100)
204 3mkq_A Coatomer beta'-subunit; 94.5 0.45 1.6E-05 51.4 14.7 142 188-398 633-774 (814)
205 1wy6_A Hypothetical protein ST 94.4 0.92 3.1E-05 36.6 12.1 74 221-295 80-158 (172)
206 3ma5_A Tetratricopeptide repea 94.4 0.35 1.2E-05 36.8 9.8 86 21-125 6-91 (100)
207 3qww_A SET and MYND domain-con 94.2 0.17 5.8E-06 50.5 9.5 91 107-210 310-408 (433)
208 3lpz_A GET4 (YOR164C homolog); 94.1 3.6 0.00012 39.0 17.8 135 71-223 36-175 (336)
209 3mkq_A Coatomer beta'-subunit; 93.8 1.5 5E-05 47.3 17.0 102 134-289 633-734 (814)
210 3qwp_A SET and MYND domain-con 93.7 0.23 7.9E-06 49.5 9.4 97 101-210 293-397 (429)
211 1na3_A Designed protein CTPR2; 93.7 0.3 1E-05 35.7 8.1 64 22-99 9-72 (91)
212 1klx_A Cysteine rich protein B 93.6 1.4 4.8E-05 35.7 12.7 104 3-155 11-122 (138)
213 1dce_A Protein (RAB geranylger 92.9 1.8 6.1E-05 44.8 15.1 167 111-329 45-242 (567)
214 1dce_A Protein (RAB geranylger 91.9 4.8 0.00017 41.5 16.8 178 38-277 45-241 (567)
215 2wpv_A GET4, UPF0363 protein Y 90.7 5.7 0.00019 37.3 14.3 134 71-223 34-173 (312)
216 3ly7_A Transcriptional activat 90.5 2.7 9.1E-05 40.5 12.0 72 181-266 274-347 (372)
217 2kc7_A BFR218_protein; tetratr 90.2 0.17 5.8E-06 38.1 2.9 82 319-405 6-93 (99)
218 1zu2_A Mitochondrial import re 90.1 0.7 2.4E-05 38.7 6.7 90 35-155 15-116 (158)
219 3mkq_B Coatomer subunit alpha; 90.0 2.2 7.4E-05 36.4 9.8 103 236-378 14-116 (177)
220 2kc7_A BFR218_protein; tetratr 89.8 0.67 2.3E-05 34.6 6.1 47 108-155 13-60 (99)
221 3mkq_B Coatomer subunit alpha; 88.4 11 0.00037 32.0 14.0 132 191-379 12-143 (177)
222 3ly7_A Transcriptional activat 87.2 22 0.00075 34.2 16.4 66 213-292 275-340 (372)
223 1zu2_A Mitochondrial import re 86.0 1.3 4.5E-05 37.0 5.9 102 236-360 11-133 (158)
224 1wdy_A 2-5A-dependent ribonucl 85.4 6.3 0.00022 35.7 11.2 188 135-384 41-249 (285)
225 2p58_C Putative type III secre 83.7 7.3 0.00025 29.4 8.2 63 189-266 45-107 (116)
226 1wdy_A 2-5A-dependent ribonucl 83.3 9.2 0.00032 34.5 11.3 235 75-375 7-274 (285)
227 3lvg_A Clathrin heavy chain 1; 83.2 0.089 3.1E-06 52.3 -2.9 177 69-274 53-275 (624)
228 2ff4_A Probable regulatory pro 83.0 5.1 0.00018 39.0 9.7 86 69-155 111-230 (388)
229 1k1a_A B-cell lymphoma 3-encod 82.6 6.7 0.00023 34.6 9.8 88 101-211 12-103 (241)
230 2uwj_G Type III export protein 82.1 6.9 0.00023 29.5 7.5 63 189-266 44-106 (115)
231 1pc2_A Mitochondria fission pr 80.7 8.1 0.00028 31.9 8.5 83 4-99 15-100 (152)
232 1v54_E Cytochrome C oxidase po 80.5 3 0.0001 31.6 5.1 62 111-192 26-87 (109)
233 1wy6_A Hypothetical protein ST 79.8 23 0.00077 28.7 13.6 133 35-211 20-152 (172)
234 1k1a_A B-cell lymphoma 3-encod 79.5 14 0.00049 32.3 10.8 144 29-210 13-173 (241)
235 3bee_A Putative YFRE protein; 78.9 6.3 0.00022 29.3 6.8 65 21-99 5-72 (93)
236 3bee_A Putative YFRE protein; 78.2 5.5 0.00019 29.7 6.3 64 182-257 4-73 (93)
237 1nzn_A CGI-135 protein, fissio 78.2 19 0.00067 28.5 9.7 73 333-407 19-108 (126)
238 4h7y_A Dual specificity protei 77.9 25 0.00087 28.9 10.3 111 183-303 12-135 (161)
239 1pc2_A Mitochondria fission pr 77.1 8.7 0.0003 31.7 7.6 48 242-290 13-63 (152)
240 3u64_A Protein TP_0956; tetrat 76.9 8.2 0.00028 35.7 8.1 76 181-268 193-283 (301)
241 3b7b_A Euchromatic histone-lys 76.7 20 0.00067 31.4 10.9 115 101-255 114-235 (237)
242 1v54_E Cytochrome C oxidase po 75.2 15 0.0005 27.9 7.5 50 242-291 25-74 (109)
243 4b4t_P 26S proteasome regulato 74.5 49 0.0017 32.7 13.9 190 3-210 32-244 (445)
244 1n11_A Ankyrin; clathrin, BAND 73.6 58 0.002 31.6 14.4 43 7-53 27-71 (437)
245 4h7y_A Dual specificity protei 72.7 36 0.0012 28.0 9.9 84 68-155 11-119 (161)
246 3kea_A K1L; tropism, ANK repea 71.5 13 0.00045 34.0 8.5 43 362-405 203-250 (285)
247 4fhn_B Nucleoporin NUP120; pro 71.4 1.3E+02 0.0045 33.7 18.1 91 265-372 902-992 (1139)
248 3u64_A Protein TP_0956; tetrat 71.2 25 0.00084 32.5 9.8 98 183-294 153-272 (301)
249 4gns_B Protein CSD3, chitin bi 71.1 64 0.0022 34.2 14.3 55 320-379 344-399 (754)
250 1n11_A Ankyrin; clathrin, BAND 69.6 83 0.0029 30.4 15.5 143 28-212 17-171 (437)
251 2v5f_A Prolyl 4-hydroxylase su 69.2 30 0.001 25.8 8.8 56 236-291 14-75 (104)
252 2y69_E Cytochrome C oxidase su 69.1 14 0.00048 29.7 6.5 63 110-192 68-130 (152)
253 4fhn_B Nucleoporin NUP120; pro 68.6 17 0.00059 40.9 10.0 67 186-252 940-1008(1139)
254 4gns_B Protein CSD3, chitin bi 68.4 44 0.0015 35.5 12.4 117 25-156 251-397 (754)
255 2v5f_A Prolyl 4-hydroxylase su 67.2 19 0.00067 26.9 7.3 66 316-383 8-79 (104)
256 3kea_A K1L; tropism, ANK repea 66.8 46 0.0016 30.2 11.2 146 76-264 65-225 (285)
257 3ltj_A Alpharep-4; protein eng 65.8 60 0.0021 27.3 16.5 42 182-223 119-160 (201)
258 3lvg_A Clathrin heavy chain 1; 64.9 8.5 0.00029 38.5 5.6 243 129-405 53-366 (624)
259 2ff4_A Probable regulatory pro 64.6 12 0.0004 36.4 6.8 68 186-265 173-248 (388)
260 3jxi_A Vanilloid receptor-rela 63.5 24 0.00081 31.4 8.3 94 107-223 58-182 (260)
261 3eu9_A Huntingtin-interacting 63.4 30 0.001 30.0 8.9 22 189-210 179-200 (240)
262 3eu9_A Huntingtin-interacting 60.8 31 0.0011 29.9 8.5 16 193-208 115-130 (240)
263 3ffl_A Anaphase-promoting comp 60.7 73 0.0025 26.5 10.0 106 72-212 22-150 (167)
264 2y69_E Cytochrome C oxidase su 60.5 38 0.0013 27.2 7.5 50 242-291 68-117 (152)
265 3hra_A Ankyrin repeat family p 59.3 37 0.0013 28.6 8.5 145 80-262 12-173 (201)
266 3aji_A 26S proteasome non-ATPa 56.9 48 0.0016 28.6 9.0 141 29-210 10-162 (231)
267 2zu6_B Programmed cell death p 54.9 39 0.0013 31.5 8.1 116 217-378 168-286 (307)
268 2p58_C Putative type III secre 54.6 28 0.00094 26.3 5.5 51 236-292 49-99 (116)
269 3ljn_A Hypothetical protein; a 54.0 53 0.0018 30.9 9.4 210 19-286 15-265 (364)
270 2nsz_A Programmed cell death p 53.9 80 0.0027 24.9 9.5 67 186-264 9-80 (129)
271 2uwj_G Type III export protein 51.9 26 0.0009 26.4 5.0 51 236-292 48-98 (115)
272 2pk8_A Uncharacterized protein 51.7 20 0.00068 26.3 4.2 27 420-446 12-38 (103)
273 2nsz_A Programmed cell death p 51.7 79 0.0027 25.0 8.5 59 236-295 16-76 (129)
274 3eiq_C Programmed cell death p 51.6 64 0.0022 30.7 9.2 112 263-380 218-339 (358)
275 3ltm_A Alpha-REP4; protein eng 50.6 1.1E+02 0.0039 25.7 17.5 42 182-223 124-165 (211)
276 4b4t_P 26S proteasome regulato 50.5 1.9E+02 0.0065 28.3 15.4 94 236-343 146-246 (445)
277 2ion_A PDCD4, programmed cell 47.3 83 0.0028 25.7 8.1 67 186-264 11-82 (152)
278 1ug3_A EIF4GI, eukaryotic prot 47.3 38 0.0013 32.0 7.0 137 236-378 20-168 (339)
279 2ion_A PDCD4, programmed cell 45.6 65 0.0022 26.4 7.2 117 217-379 11-130 (152)
280 3eiq_C Programmed cell death p 45.3 2.1E+02 0.007 27.2 13.3 148 217-379 56-245 (358)
281 3b7b_A Euchromatic histone-lys 45.3 64 0.0022 27.9 7.9 14 195-208 52-65 (237)
282 1nzn_A CGI-135 protein, fissio 45.0 1.1E+02 0.0038 24.1 8.9 57 68-124 33-103 (126)
283 3utm_A Tankyrase-1; tankyrase, 44.3 1.1E+02 0.0038 28.1 9.9 109 77-212 28-149 (351)
284 1oai_A Nuclear RNA export fact 43.4 14 0.00047 24.9 2.2 23 1-23 34-57 (59)
285 2pnn_A Transient receptor pote 43.0 57 0.0019 29.1 7.3 131 68-223 9-190 (273)
286 2rfa_A Transient receptor pote 43.0 50 0.0017 28.5 6.7 173 77-287 7-219 (232)
287 2l0z_A Glycoprotein G2; zinc-b 39.9 8.9 0.0003 23.3 0.7 13 510-522 16-29 (42)
288 1dm5_A Annexin XII E105K mutan 39.4 2E+02 0.0067 26.7 10.4 107 4-121 16-129 (315)
289 3aji_A 26S proteasome non-ATPa 39.1 1.2E+02 0.0043 25.8 8.8 172 76-296 9-199 (231)
290 4b4t_R RPN7, 26S proteasome re 38.4 2.5E+02 0.0084 27.3 11.6 93 131-256 132-237 (429)
291 2f8y_A Notch homolog 1, transl 37.7 1.5E+02 0.0052 25.0 9.1 125 12-155 9-147 (223)
292 1w3w_A Annexin A8; coagulation 37.4 2.6E+02 0.0089 26.1 11.2 50 236-288 249-298 (327)
293 2y1l_E Darpin-8.4; hydrolase-i 37.1 1.6E+02 0.0055 23.6 9.5 117 19-155 9-135 (169)
294 1yii_A Annexin A5, annexin V, 36.4 2.4E+02 0.0082 26.2 10.6 108 4-122 18-132 (320)
295 4b4t_S RPN3, 26S proteasome re 36.3 1.3E+02 0.0043 30.3 8.8 26 71-96 232-257 (523)
296 1zbp_A Hypothetical protein VP 35.4 82 0.0028 28.6 6.7 24 385-408 112-135 (273)
297 3jxi_A Vanilloid receptor-rela 35.1 1.1E+02 0.0037 26.9 7.8 119 25-154 6-161 (260)
298 3v31_A Ankyrin repeat family A 34.4 1.3E+02 0.0045 24.0 7.8 115 136-290 39-160 (167)
299 2zu6_B Programmed cell death p 33.6 2.9E+02 0.0099 25.5 14.6 142 236-379 12-194 (307)
300 3t8k_A Uncharacterized protein 33.4 75 0.0026 26.7 6.1 159 140-350 13-185 (186)
301 3txn_A 26S proteasome regulato 33.3 2.6E+02 0.009 26.9 10.5 57 234-290 106-167 (394)
302 3d9h_A CDNA FLJ77766, highly s 32.7 2.7E+02 0.0091 24.8 11.1 20 136-155 160-179 (285)
303 3hra_A Ankyrin repeat family p 32.7 1.5E+02 0.005 24.6 8.0 22 190-211 42-63 (201)
304 2lo3_A SAGA-associated factor 32.5 12 0.0004 23.0 0.4 24 461-488 6-29 (44)
305 3ljn_A Hypothetical protein; a 31.6 1.9E+02 0.0064 26.9 9.3 177 7-223 33-250 (364)
306 1bd8_A P19INK4D CDK4/6 inhibit 31.5 1.1E+02 0.0038 24.1 6.7 106 76-209 5-123 (156)
307 2rfa_A Transient receptor pote 31.5 1.3E+02 0.0044 25.7 7.5 158 102-295 7-184 (232)
308 3utm_A Tankyrase-1; tankyrase, 31.5 3E+02 0.01 25.0 11.5 97 101-223 27-130 (351)
309 1y8m_A FIS1; mitochondria, unk 30.9 2.1E+02 0.0072 23.1 10.7 79 348-443 36-130 (144)
310 2hyv_A Annexin A2; calcium-bin 30.6 3.2E+02 0.011 25.1 12.4 237 4-287 6-278 (308)
311 2dzn_A Probable 26S proteasome 30.5 55 0.0019 28.1 4.8 185 136-384 5-204 (228)
312 2etb_A Transient receptor pote 30.4 2.7E+02 0.0091 24.1 9.8 35 189-223 138-178 (256)
313 2k0q_A Putative uncharacterize 30.2 14 0.00049 25.5 0.6 22 499-520 8-29 (74)
314 1oy3_D Transcription factor in 30.2 82 0.0028 27.9 6.2 21 362-383 233-253 (282)
315 3ffl_A Anaphase-promoting comp 29.5 2.1E+02 0.007 23.8 7.6 55 236-290 29-91 (167)
316 2xai_A ASB-9, ankyrin repeat a 28.0 3E+02 0.01 24.0 11.3 159 8-209 17-188 (261)
317 3l6a_A Eukaryotic translation 27.5 2.9E+02 0.0099 26.2 9.5 75 186-272 14-93 (364)
318 4g8k_A 2-5A-dependent ribonucl 27.3 3.5E+02 0.012 24.5 14.5 85 189-297 241-329 (337)
319 3l6a_A Eukaryotic translation 26.2 4.2E+02 0.014 25.0 10.7 132 236-378 21-165 (364)
320 3o48_A Mitochondria fission 1 25.7 1.4E+02 0.0048 23.8 5.7 47 332-381 60-109 (134)
321 1y8m_A FIS1; mitochondria, unk 25.3 2E+02 0.0069 23.2 6.7 60 321-383 47-110 (144)
322 2zhj_A Annexin A4; zynogen gra 25.0 4.1E+02 0.014 24.5 10.2 51 72-122 78-135 (322)
323 2qq8_A TBC1 domain family memb 24.7 1.5E+02 0.0052 27.7 7.0 58 248-305 214-271 (334)
324 4hbd_A KN motif and ankyrin re 24.2 3.7E+02 0.013 23.7 9.6 154 189-379 113-275 (276)
325 2fe3_A Peroxide operon regulat 24.2 1.8E+02 0.0061 23.3 6.5 38 239-276 33-70 (145)
326 1qsa_A Protein (soluble lytic 24.2 5.9E+02 0.02 26.1 27.3 118 236-377 224-345 (618)
327 1hm6_A Annexin 1; phospholipid 24.1 4.1E+02 0.014 24.9 9.8 42 243-287 276-317 (346)
328 2dod_A Transcription elongatio 23.6 65 0.0022 23.3 3.1 30 332-362 17-46 (82)
329 2etb_A Transient receptor pote 23.6 36 0.0012 30.1 2.3 98 103-212 7-115 (256)
330 1axn_A Annexin III; annexin fa 22.8 4.6E+02 0.016 24.3 10.4 41 244-287 253-293 (323)
331 2fo1_E LIN-12 protein; beta-ba 22.5 1.5E+02 0.005 28.0 6.6 100 101-223 128-241 (373)
332 3txn_A 26S proteasome regulato 22.2 5.2E+02 0.018 24.7 20.0 159 71-254 20-208 (394)
333 4b4t_R RPN7, 26S proteasome re 21.7 2.3E+02 0.0078 27.5 7.9 82 72-155 133-233 (429)
334 1bd8_A P19INK4D CDK4/6 inhibit 21.3 40 0.0014 27.0 1.9 94 102-223 6-107 (156)
335 2yru_A Steroid receptor RNA ac 20.5 2.1E+02 0.0072 22.2 5.7 42 249-290 48-89 (118)
336 4g8k_A 2-5A-dependent ribonucl 20.1 4.9E+02 0.017 23.5 11.3 108 113-262 217-329 (337)
337 4a1g_A Mitotic checkpoint seri 20.1 2.4E+02 0.0082 23.0 6.3 54 244-297 82-136 (152)
338 2ko4_A Mediator of RNA polymer 20.0 1.4E+02 0.0048 21.2 4.1 38 61-98 25-64 (81)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.1e-31 Score=275.59 Aligned_cols=202 Identities=10% Similarity=0.097 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhcCCCCc-eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHH
Q 035847 113 VGKDVYDYMISIKFEGNA-CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLM 191 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li 191 (523)
.++.+...+.+.+..+.+ .+++.+|++|+|.|++++|+++|++ |+..|+.||..+||+||
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~-------------------M~~~Gv~pd~~tyn~Li 68 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDE-------------------ARRNGVQLSQYHYNVLL 68 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHH-------------------HHHHTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------HHHcCCCCCHhHHHHHH
Confidence 345555666666665543 4689999999999999999999999 88779999999999999
Q ss_pred HHHHhcCC---------hHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 192 DFYAKCRY---------LKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 192 ~~~~k~g~---------~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
++|++.+. ++.|.++|++|. .||.+|||+||. +|++.|++++|+++|++|.+.|+
T Consensus 69 ~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~------------~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 69 YVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGAR------------LAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp HHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCC
Confidence 99998765 688999999996 489999999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 259 QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 259 ~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
.||..||++||.+|++.|++++|.++++.|.+.|+.| |..|||+||++|++.|+. ++|.++|
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P----------------d~~ty~~Li~~~~~~g~~--d~A~~ll 198 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP----------------EEPELAALLKVSMDTKNA--DKVYKTL 198 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC----------------CHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----------------CHHHHHHHHHHHhhCCCH--HHHHHHH
Confidence 9999999999999999999999999999999997755 679999999999999999 9999999
Q ss_pred HHhHHhcCCccCHhHHHHHHHHHHhh
Q 035847 339 EMMKKEYNMEPAMEQYCCMVDLLARA 364 (523)
Q Consensus 339 ~~m~~~~g~~p~~~ty~~li~~~~~~ 364 (523)
++|++. |+.|+..||+.++..+++.
T Consensus 199 ~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 199 QRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999998 9999999999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=5.7e-31 Score=272.32 Aligned_cols=211 Identities=11% Similarity=0.030 Sum_probs=177.7
Q ss_pred HHHHHHHHhhhCCCCCC-cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 5 NVTLLLQSMDLTNPDEC-TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 5 ~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
.+..+.+++++.++.+. ...++.+|++|++.|++++|.++|++|.+.|+ .||++|||+||.+|++.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-------------~pd~~tyn~Li~~c~~~ 74 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV-------------QLSQYHYNVLLYVCSLA 74 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-------------CCCHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-------------CCCHhHHHHHHHHHHhC
Confidence 45667788888887654 35689999999999999999999999999999 89999999999999988
Q ss_pred CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCc
Q 035847 84 GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL 163 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 163 (523)
+...++ ...++++.|.++|++|.+.|+.||..|||+||++|++.|++++|.++|++
T Consensus 75 ~~~~~~----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~-------- 130 (501)
T 4g26_A 75 EAATES----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQ-------- 130 (501)
T ss_dssp CCCSSS----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH--------
T ss_pred Cchhhh----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------
Confidence 875432 12234566677777777778999999999999999999999999999999
Q ss_pred hhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhc
Q 035847 164 LKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 164 ~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
|+..|+.||..+||+||.+|++.|++++|.++|++|. .||..|||+||. +|++
T Consensus 131 -----------M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~------------~~~~ 187 (501)
T 4g26_A 131 -----------MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK------------VSMD 187 (501)
T ss_dssp -----------HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH------------HHHH
T ss_pred -----------HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH------------HHhh
Confidence 8887999999999999999999999999999999996 499999999999 9999
Q ss_pred cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 035847 240 YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV 275 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 275 (523)
.|++++|.++|++|.+.|+.|+..||++++..|+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.2e-29 Score=265.12 Aligned_cols=366 Identities=9% Similarity=-0.062 Sum_probs=234.1
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH------------------Hhc
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG------------------MFE 63 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~------------------~f~ 63 (523)
.+++|+.+|++|.. ..||..++..+..+|.+.|+++.|..+++.+... .++..+. +|+
T Consensus 99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 36789999999984 4678889999999999999999999999887543 2222222 777
Q ss_pred C-CCCC------------------CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------H--------------
Q 035847 64 K-MPER------------------NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------V-------------- 101 (523)
Q Consensus 64 ~-~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------l-------------- 101 (523)
+ +|.. ++.+|+.++.+|.+.|++++|+++|++|.+.+ +
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 3 3333 47889999999999999999999999887654 1
Q ss_pred ------------------------HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc
Q 035847 102 ------------------------YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157 (523)
Q Consensus 102 ------------------------l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 157 (523)
+..|.+.|++++|.++|+.+.+. .++..+++.++.+|.+.|++++|..+|++
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-- 330 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTK-- 330 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHH--
Confidence 33445677888888888888765 57888899999999999999999999888
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i 234 (523)
+.. .-..+..+++.++.+|.+.|+.++|..+|+.+.+ .+..+|+.++.
T Consensus 331 -----------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~----------- 381 (597)
T 2xpi_A 331 -----------------ILE-IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI----------- 381 (597)
T ss_dssp -----------------HHH-HCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH-----------
T ss_pred -----------------HHH-cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH-----------
Confidence 222 1122455566666666666666666666665532 34455666666
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.|.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++++.+.+.+ +++..
T Consensus 382 -~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------~~~~~ 442 (597)
T 2xpi_A 382 -YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-----------------QGTHL 442 (597)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----------------TTCSH
T ss_pred -HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------ccchH
Confidence 5556666666666666665431 1234556666666666666666666666655421 12445
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-------CCCCCCC---
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-------PFEPSSA--- 384 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~--- 384 (523)
+|+.++.+|.+.|++ ++|.++|+.|.+. ...+..+|+.++.+|.+.|++++|.++++++ +..|+..
T Consensus 443 ~~~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNI--LLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 555555556666655 5566666555543 1223555555666666666666655555554 3344421
Q ss_pred ---------CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHH
Q 035847 385 ---------EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKIS 427 (523)
Q Consensus 385 ---------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (523)
..|+.+.|...++++++..|.++..+..+...+...|+.+++.
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555566656655555555555555556666554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=4.3e-28 Score=258.00 Aligned_cols=403 Identities=9% Similarity=-0.065 Sum_probs=276.9
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
++...|+.++..+.+.|+++.|..+++.+... .||..+|+.+..+|.+.|++++|+.+|+++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI---------------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh---------------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 57788999999999999999999999999854 467789999999999999999999999998433
Q ss_pred c--------HHHHhhccCChHHHHHHHHHHH-Hh--------------cCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 100 G--------VYKACSELKDHRVGKDVYDYMI-SI--------------KFEGNACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 100 g--------ll~~~~~~~~~~~a~~~~~~m~-~~--------------g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
. ++.++.+.|++++|.++|+.+. .. |..++..+|+.++.+|.+.|++++|..+|+++
T Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 8889999999999999998532 11 22335789999999999999999999999984
Q ss_pred cccccCchhhH------------------hhH-hhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh
Q 035847 157 DFSNLSLLKHG------------------KEI-HPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL 215 (523)
Q Consensus 157 ~~~~~~~~~~~------------------~~~-~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~ 215 (523)
.-........- ..+ +..+... +..++..+|+.++.+|.+.|++++|.++|+++.+ ++.
T Consensus 227 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 227 LMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE-DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG-GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc-hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 11111111000 000 1111111 2233334445555555555555555555555554 455
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
.+|+.++. .|.+.|++++|+++|++|.+.+. .+..+++.++.++.+.|+.++|.++++.+.+. .+.
T Consensus 306 ~~~~~l~~------------~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~ 371 (597)
T 2xpi_A 306 DLLLCKAD------------TLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE 371 (597)
T ss_dssp HHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHH------------HHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence 55555555 55555555555555555554331 24445555555555555555555555555532 233
Q ss_pred hHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHH
Q 035847 296 STGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCM 357 (523)
Q Consensus 296 ~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~l 357 (523)
+..+++.+..+| .+ +.+..+|+.++.+|.+.|+. ++|.++|++|.+. ..++..+|..+
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~l 447 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH--DQAISAYTTAARL--FQGTHLPYLFL 447 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHT--TTTCSHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CccchHHHHHH
Confidence 344555555444 22 34577999999999999999 9999999999864 24578999999
Q ss_pred HHHHHhhCCHHHHHHHHHhCC-CCCCCC-----------CCCCHHHHHHHHHHHHhhC------CCC-CcceeEEEecCC
Q 035847 358 VDLLARAGQFDDTLNFMKKMP-FEPSSA-----------EPCNPDIAEHAARHLFELE------PLS-SGKVHSFIAGDT 418 (523)
Q Consensus 358 i~~~~~~g~~~~A~~~~~~m~-~~p~~~-----------~~~~~~~~~~~~~~l~~~~------~~~-~~~~~~~~~~~~ 418 (523)
..+|.+.|++++|.++++++. ..|+.. ..|+.+.|...++++++.. |.+ ...+..+...+.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999973 445544 7899999999999999884 332 346777777888
Q ss_pred CCchHHHHHHHHHHHHHHHHHcCCcCCc--------hhhhhhHHHHHHHccc
Q 035847 419 SHSLVHKISEKLMRLYSEIKKIGYMKRI--------PACGHSEKLALAFGLI 462 (523)
Q Consensus 419 ~~~~~~~~~~~l~~l~~~m~~~g~~pd~--------~~~~~~~~la~a~~l~ 462 (523)
.+|+.+++. ++++++.+.+ |+. ..+...++.+.|...+
T Consensus 528 ~~g~~~~A~----~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 528 KLKMYDAAI----DALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HTTCHHHHH----HHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHH----HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 899999986 5556665554 654 2344455555554443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.86 E-value=9.6e-19 Score=175.62 Aligned_cols=333 Identities=10% Similarity=0.078 Sum_probs=267.1
Q ss_pred chhHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
.+++|+..|..+.+. .|+. ..+..+-..+...|+++.|...+....+.. ..+..+|+.+...|
T Consensus 14 ~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--------------p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 14 DFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------PLLAEAYSNLGNVY 77 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------CCchHHHHHHHHHH
Confidence 468899999888765 4554 455555566778899999999998888764 34778999999999
Q ss_pred HhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHH
Q 035847 81 NVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~ 150 (523)
.+.|++++|++.|+++.+.. +..++...|++++|.+.+..+++. .|+ ..++..+-..|...|++++|.
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999987654 777788999999999999999876 454 456777888888999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYAL 227 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~ 227 (523)
..|++ +.. ..+.+..+|+.+...|.+.|++++|...|+++.+ | +...|..+-.
T Consensus 156 ~~~~~-------------------al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---- 211 (388)
T 1w3b_A 156 ACYLK-------------------AIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN---- 211 (388)
T ss_dssp HHHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH----
T ss_pred HHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH----
Confidence 99998 332 1223567889999999999999999999998753 4 4457777777
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
.+...|++++|+..|++.... .| +..++..+..++.+.|++++|.+.++.+.+..
T Consensus 212 --------~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 267 (388)
T 1w3b_A 212 --------VLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-------------- 267 (388)
T ss_dssp --------HHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------------
T ss_pred --------HHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------
Confidence 888899999999999988774 35 46788888899999999999999999988742
Q ss_pred hCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA- 384 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 384 (523)
+.+..+|+.+...|.+.|+. ++|..+|+++.+. ..++..+|..+...+.+.|++++|.+.++++ ...|+..
T Consensus 268 ---p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 268 ---PHFPDAYCNLANALKEKGSV--AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp ---SSCHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred ---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 12345788899999999999 9999999999875 3456788999999999999999999999885 4556654
Q ss_pred ----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 ----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 ----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
..|+.+.|...+++.+++.|.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 56777777777777777666543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.83 E-value=5.2e-18 Score=170.25 Aligned_cols=310 Identities=15% Similarity=0.110 Sum_probs=261.7
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|..+++...+. .+.+..+|..+..++.+.|++++|...++.+.+.. ..+..+|..+...+.
T Consensus 48 ~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 112 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--------------PDFIDGYINLAAALV 112 (388)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--------------cchHHHHHHHHHHHH
Confidence 357788888877664 34577899999999999999999999999998763 235668999999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+.|++++|++.|+++.+.. +-..+...|++++|.+.+..+++.. +.+..+|+.+...|.+.|++++|...
T Consensus 113 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987654 5667778899999999999999873 33577899999999999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcC
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGG 229 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g 229 (523)
|++ ... --+.+...|..+-..+.+.|++++|...|++.. .| +..+|+.+..
T Consensus 192 ~~~-------------------al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------ 245 (388)
T 1w3b_A 192 FEK-------------------AVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC------ 245 (388)
T ss_dssp HHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH------
T ss_pred HHH-------------------HHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH------
Confidence 999 322 112346788899999999999999999998764 24 5678999999
Q ss_pred CccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC
Q 035847 230 FREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG 308 (523)
Q Consensus 230 ~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 308 (523)
.|.+.|++++|++.|+++.+. .| +..+|..+..++.+.|++++|.+.++.+.+..
T Consensus 246 ------~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------- 301 (388)
T 1w3b_A 246 ------VYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---------------- 301 (388)
T ss_dssp ------HHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC----------------
T ss_pred ------HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------
Confidence 999999999999999999885 34 46789999999999999999999999998742
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
+++..+|+.+...|...|+. ++|..+|+++.+. .|+ ..++..+...|.+.|++++|.+.++++ ...|+.
T Consensus 302 -p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 302 -PTHADSLNNLANIKREQGNI--EEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCH--HHHHHHHHHHTTS---CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred -cccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 33667899999999999999 9999999999753 454 789999999999999999999999885 455643
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=192.20 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=117.7
Q ss_pred hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh---cCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ---TDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~---~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.|||+||. +||+.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|
T Consensus 128 ~TynaLId------------glcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 128 QRLLAFFK------------CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHH------------HHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH------------HHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 59999999 99999999999999988764 6899999999999999999999999999999999997
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
+.| |++|||+||++||+.|+.. ++|.++|++|.+. |+.||..||++++.+..|.+-++...+
T Consensus 196 ~~P----------------DvvTYntLI~glcK~G~~~-e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 196 LTP----------------DLLSYAAALQCMGRQDQDA-GTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp CCC----------------CHHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred CCC----------------cHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHH
Confidence 755 7799999999999999851 5789999999998 999999999999999988876666665
Q ss_pred HHHhC
Q 035847 373 FMKKM 377 (523)
Q Consensus 373 ~~~~m 377 (523)
+..++
T Consensus 258 v~P~f 262 (1134)
T 3spa_A 258 VKPTF 262 (1134)
T ss_dssp GCCCC
T ss_pred hCccc
Confidence 54433
No 8
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=190.50 Aligned_cols=137 Identities=14% Similarity=0.121 Sum_probs=121.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 179 DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK-------QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 179 g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
....-..|||+||++|||+|++++|.++|++|. .||++|||+||. +||+.|++++|.++|+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~------------Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML------------GWARQGAFKELVYVLF 189 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHH------------HHHHHTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHH------------HHHhCCCHHHHHHHHH
Confidence 344557799999999999999999999998764 599999999999 9999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCCh-hHHHHHHHHHHHhcCCchHHHHhHHHhhh--------------CCCCC----
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGF-KLGKEIHGYVLRHHIQLSTGVGIALISIQ--------------GLGTG---- 312 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~g~~~~~~~~~~li~~y--------------~~~p~---- 312 (523)
+|.+.|+.||.+|||+||.++|+.|.. +.|.+++++|.+.|+.||..+|++++..+ ++.|+
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~ 269 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc
Confidence 999999999999999999999999985 78999999999999999999999888776 33333
Q ss_pred --cchHHHHHHHHHhcC
Q 035847 313 --SFVWNSLIDMYGRCG 327 (523)
Q Consensus 313 --~~~~n~li~~~~~~g 327 (523)
+.+.+.|.+.|.+.+
T Consensus 270 ~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 270 PPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCCCCTTTHHHHCCCS
T ss_pred ccccchHHHHHHHccCC
Confidence 566667777787766
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.77 E-value=6.5e-17 Score=165.27 Aligned_cols=304 Identities=11% Similarity=0.035 Sum_probs=224.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..++..+...+.+.|+++.|..++..+.+.. ..+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 44556666666666677777777766666543 2356666666666666677777766666665532
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+...|.+.|++++|...|++ +.. .
T Consensus 91 --------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------------~~~--~ 123 (450)
T 2y4t_A 91 --------------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKK-------------------VLK--S 123 (450)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT--S
T ss_pred --------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHh--c
Confidence 44677899999999999999999999999 333 2
Q ss_pred CC-ch---hHHHHHHH------------HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccC
Q 035847 181 ES-DL---LVNNSLMD------------FYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYG 241 (523)
Q Consensus 181 ~~-d~---~~~~~li~------------~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g 241 (523)
.| +. .++..+.. .|.+.|++++|...|+.+.+ .+...|+.+.. .|.+.|
T Consensus 124 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g 191 (450)
T 2y4t_A 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE------------CFIKEG 191 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTT
T ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH------------HHHHCC
Confidence 33 33 55555544 48999999999999998753 46778999999 899999
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLID 321 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~ 321 (523)
++++|++.|+++.+.. +.+..++..+...+...|+.++|.+.++.+.+..-.. ...+..+-.. .....+..+..
T Consensus 192 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~~~----~~~~~~~~~~~ 265 (450)
T 2y4t_A 192 EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH-KRCFAHYKQV----KKLNKLIESAE 265 (450)
T ss_dssp CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHH----HHHHHHHHHHH
Confidence 9999999999998753 3467889999999999999999999999998642111 1111110000 00011223378
Q ss_pred HHHhcCCCchHHHHHHHHHhHHhcCCccC-----HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------
Q 035847 322 MYGRCGAIQKNEGWRYFEMMKKEYNMEPA-----MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA----------- 384 (523)
Q Consensus 322 ~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----------- 384 (523)
.|...|+. ++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|...++++ ...|+..
T Consensus 266 ~~~~~g~~--~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 266 ELIRDGRY--TDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHTCH--HHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHcCCH--HHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 89999999 9999999999875 455 458899999999999999999999885 4566654
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..|+.+.|...+++++++.|.++.
T Consensus 341 ~~~~~~~A~~~~~~al~~~p~~~~ 364 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNENDQQ 364 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSSSCHH
T ss_pred HhcCHHHHHHHHHHHHHhCcchHH
Confidence 789999999999999999998765
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-16 Score=163.82 Aligned_cols=338 Identities=10% Similarity=-0.000 Sum_probs=264.2
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
++++|+..|+++.... ||..+|..+..++.+.|+++.|...+..+.+.. ..+..+|..+...|.
T Consensus 21 ~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 21 KYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--------------PDYSKVLLRRASANE 84 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------------hHHHHHHHHHHHHHH
Confidence 4689999999999865 799999999999999999999999999999875 246789999999999
Q ss_pred hcCCchHHHHHHHHhhHcc---------H---------------------------------------------------
Q 035847 82 VLGYYEEIVNLFYLLIDEG---------V--------------------------------------------------- 101 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g---------l--------------------------------------------------- 101 (523)
+.|++++|+..|+++...+ +
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999875432 0
Q ss_pred --------------------------HHH--hh---ccCChHHHHHHHHHHHH-----hcCC--------CCceeHhHHH
Q 035847 102 --------------------------YKA--CS---ELKDHRVGKDVYDYMIS-----IKFE--------GNACVKRPVL 137 (523)
Q Consensus 102 --------------------------l~~--~~---~~~~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~li 137 (523)
..+ +. +.|+++.|...++.+.+ ..-. .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 000 11 37889999999998887 3112 2355778888
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ +++. .|+..++..+...|.+.|++++|...|+...+ .+
T Consensus 245 ~~~~~~~~~~~A~~~~~~------------------~l~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 303 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKK------------------AIEL---FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN 303 (514)
T ss_dssp HHHHHSSCHHHHHHHHHH------------------HHHH---CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC
T ss_pred HHHHHCCCHHHHHHHHHH------------------HHhh---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC
Confidence 889999999999999988 1222 23377888889999999999999999887643 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
...|..+.. .|.+.|++++|+..|++..+... .+..++..+...+...|++++|.+.+..+.+..
T Consensus 304 ~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 368 (514)
T 2gw1_A 304 SSVYYHRGQ------------MNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-- 368 (514)
T ss_dssp THHHHHHHH------------HHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--
Confidence 667888888 88889999999999999887532 256778888888999999999999998887742
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHh---hCCH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLAR---AGQF 367 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~---~g~~ 367 (523)
+.+..+|..+...|...|+. ++|...|+.+.+...-.|+ ...|..+...+.+ .|++
T Consensus 369 ---------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 369 ---------------PEAPEVPNFFAEILTDKNDF--DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp ---------------TTCSHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred ---------------ccCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 22456788888889999999 9999999888764222222 3378888888888 8999
Q ss_pred HHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 368 DDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 368 ~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
++|...+++. ...|+.. ..|+.+.|...+++.+++.|.++.
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 9999988874 3445544 678888888888888888877653
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.75 E-value=5.3e-16 Score=158.43 Aligned_cols=290 Identities=8% Similarity=0.008 Sum_probs=233.1
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+.+|+++.... +.+..+|..+..++...|+++.|...+..+.+.+ ..+..+|..+...|.
T Consensus 41 ~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 41 QLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------------MDFTAARLQRGHLLL 105 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------CCcHHHHHHHHHHHH
Confidence 3689999999998752 3467889999999999999999999999999875 246789999999999
Q ss_pred hcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCc---eeHhHH------------HHHHHhcCCH
Q 035847 82 VLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA---CVKRPV------------LDMFIKCGRM 146 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~ 146 (523)
+.|++++|++.|+++.... +.+. .++..+ ...|.+.|++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN--------------------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HcCCHHHHHHHHHHHHhcC--------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999987643 1122 344444 4458888999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
++|...|++ +.. -...+..++..+..+|.+.|++++|..+|+.+.+ .+..+|+.+..
T Consensus 160 ~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 160 TAAIAFLDK-------------------ILE-VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999988 332 2334678899999999999999999999998753 56789999999
Q ss_pred hhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH-HHHH------------HHHhhccCChhHHHHHHHHHHH
Q 035847 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS-LSGV------------LAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 224 ~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t-~~~l------------l~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|+++... .|+..+ +..+ ..++.+.|++++|...+..+.+
T Consensus 220 ------------~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~ 285 (450)
T 2y4t_A 220 ------------LYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285 (450)
T ss_dssp ------------HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------------HHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999864 454433 4333 6788999999999999999987
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHH
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDD 369 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~ 369 (523)
.. |+.... ....|..+...|.+.|+. ++|..+++.+.+. .| +...|..+..+|...|++++
T Consensus 286 ~~--p~~~~~-----------~~~~~~~l~~~~~~~g~~--~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~ 347 (450)
T 2y4t_A 286 TE--PSIAEY-----------TVRSKERICHCFSKDEKP--VEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDE 347 (450)
T ss_dssp HC--CSSHHH-----------HHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cC--CcchHH-----------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHH
Confidence 42 210000 034788899999999999 9999999998865 34 57899999999999999999
Q ss_pred HHHHHHhC-CCCCCCC
Q 035847 370 TLNFMKKM-PFEPSSA 384 (523)
Q Consensus 370 A~~~~~~m-~~~p~~~ 384 (523)
|...+++. ...|+..
T Consensus 348 A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHhCcchH
Confidence 99999985 5666543
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7.6e-15 Score=152.24 Aligned_cols=358 Identities=11% Similarity=0.014 Sum_probs=265.9
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 100 (523)
.+...-..+.+.|+++.|...+..+.+. .||..+|..+..+|.+.|++++|+..|+++.+.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 4555566777899999999999999986 3688999999999999999999999999988765
Q ss_pred ------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHh---------------------
Q 035847 101 ------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEF--------------------- 153 (523)
Q Consensus 101 ------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f--------------------- 153 (523)
+..++...|++++|.+.++.+.+.+ +++......++..+.+......+...+
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 6778889999999999999998775 233333333333222211111111000
Q ss_pred ---------------------------------------hhc----cccccCchhhHhhHhhhhhh-----c---CCC--
Q 035847 154 ---------------------------------------EEK----DFSNLSLLKHGKEIHPHHLK-----K---DDL-- 180 (523)
Q Consensus 154 ---------------------------------------~~~----~~~~~~~~~~~~~~~~~~~~-----~---~g~-- 180 (523)
..+ .....+.++.+...+..+++ . ...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 231 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccc
Confidence 000 00113444444444444444 1 000
Q ss_pred --CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 181 --ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 181 --~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
..+..++..+...|.+.|++++|...|+... .|+..+|..+.. .|.+.|++++|++.|++....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMAL------------IMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHH------------HHHTSSCCTTGGGHHHHHHTT
T ss_pred cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHH------------HHHHCCCHHHHHHHHHHHhhc
Confidence 2346788889999999999999999999875 355677888888 889999999999999999875
Q ss_pred CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 035847 257 DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 257 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
. +.+..++..+...+...|+.++|...+..+.+.. +.+..+|..+...|...|+. ++|..
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~--~~A~~ 359 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-----------------PENIFPYIQLACLAYRENKF--DDCET 359 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-----------------SSCSHHHHHHHHHTTTTTCH--HHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------------hhhHHHHHHHHHHHHHcCCH--HHHHH
Confidence 3 2356788889999999999999999999988742 23566889999999999999 99999
Q ss_pred HHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC----CCCCCC-----C---------C---CCCHHHHHHH
Q 035847 337 YFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM----PFEPSS-----A---------E---PCNPDIAEHA 395 (523)
Q Consensus 337 ~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m----~~~p~~-----~---------~---~~~~~~~~~~ 395 (523)
+|+.+.+. ...+...+..+...+.+.|++++|...+++. +-.|+. . . .|+.+.|...
T Consensus 360 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 99999875 2334678899999999999999999998875 222321 1 5 7999999999
Q ss_pred HHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHHH
Q 035847 396 ARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKLM 431 (523)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 431 (523)
+++.++..|.+...+..+...+...|+.+++...++
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999887666555555666777777754433
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.61 E-value=3.9e-14 Score=147.94 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=176.9
Q ss_pred chhhHhhHhhhhhhcCCCCCc--------hhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCcc
Q 035847 163 LLKHGKEIHPHHLKKDDLESD--------LLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 163 ~~~~~~~~~~~~~~~~g~~~d--------~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~ 232 (523)
.++.+..++..+++. .|+ ..++..+-..+...|++++|...|+... .|+..+|..+..
T Consensus 217 ~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~--------- 284 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA---NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL--------- 284 (537)
T ss_dssp HHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHH---CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHH---------
Confidence 344455555555544 333 3356677788888999999999998875 467778888888
Q ss_pred ccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC
Q 035847 233 EITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG 312 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~ 312 (523)
.|.+.|++++|++.|++..+.. +.+..++..+...+...|+++.|.+.++.+.+.. +.+
T Consensus 285 ---~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~ 343 (537)
T 3fp2_A 285 ---TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-----------------PEN 343 (537)
T ss_dssp ---HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTC
T ss_pred ---HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----------------CCC
Confidence 8889999999999999988753 2357788888889999999999999999988743 224
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCC---CCC----
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEP---SSA---- 384 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~---- 384 (523)
...|..+...|...|+. ++|..+|+...+. . ..+...+..+...+.+.|++++|.+.+++. ...| +..
T Consensus 344 ~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKF--TESEAFFNETKLK-F-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp SHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 56888999999999999 9999999999875 1 334678889999999999999999998884 1112 211
Q ss_pred ----------CC----------CCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHHHHHH
Q 035847 385 ----------EP----------CNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKISEKL 430 (523)
Q Consensus 385 ----------~~----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 430 (523)
.. ++.+.|...+++.++..|.+...+..+...+...|+.+++...+
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 88888999999999999988876666666666778888876443
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.3e-13 Score=130.31 Aligned_cols=282 Identities=11% Similarity=0.019 Sum_probs=223.7
Q ss_pred CCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 17 NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 17 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
+.+.+...+..+...+...|+++.|..+++.+.+.. ..+..++..+...+.+.|++++|+.+|+++
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 82 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--------------PFHASCLPVHIGTLVELNKANELFYLSHKL 82 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCChhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345567778888888888999999999999998775 246678888889999999999999999998
Q ss_pred hHcc---------HHHHhhccC-ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhh
Q 035847 97 IDEG---------VYKACSELK-DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166 (523)
Q Consensus 97 ~~~g---------ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 166 (523)
.... +...+...| +.+.|.+.+....+.. +.+..+|..+...|...|++++|...|++
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------- 150 (330)
T 3hym_B 83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFT----------- 150 (330)
T ss_dssp HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHH-----------
T ss_pred HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHH-----------
Confidence 7754 666677888 9999999999998764 34577899999999999999999999998
Q ss_pred HhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 167 GKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
... -...+..++..+...|.+.|++++|...|+...+ .+...|..+.. .+.+.|++
T Consensus 151 --------a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~------------~~~~~~~~ 209 (330)
T 3hym_B 151 --------AAQ-LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV------------VAFQNGEW 209 (330)
T ss_dssp --------HHH-HTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH------------HHHHTTCH
T ss_pred --------HHH-hccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHH------------HHHHcccH
Confidence 322 1223456777799999999999999999998653 45678888888 88999999
Q ss_pred hHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 244 ETALEFFSRMIQTD--------MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 244 ~~A~~lf~~M~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
++|...|++..+.. ...+..++..+...+...|+.++|...++...+.. +.+...
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----------------~~~~~~ 272 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----------------PQNAST 272 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCSHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----------------ccchHH
Confidence 99999999987632 13345688888888999999999999998887743 225567
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHH-HhhCCH
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLL-ARAGQF 367 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~-~~~g~~ 367 (523)
|..+...|...|+. ++|..+|+...+ +.|+ ...+..+..++ ...|+.
T Consensus 273 ~~~la~~~~~~g~~--~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 273 YSAIGYIHSLMGNF--ENAVDYFHTALG---LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTCH--HHHHHHHHTTTT---TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHc---cCCCchHHHHHHHHHHHHHhCch
Confidence 88888899999999 999999988764 3564 56666676666 445554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.60 E-value=1e-12 Score=129.07 Aligned_cols=293 Identities=7% Similarity=0.008 Sum_probs=230.9
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG- 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 100 (523)
...+..+-..+...|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|+..|++..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 68 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD--------------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM 68 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3456667777888999999999999998864 2467889999999999999999999999987654
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCC----CceeHhHH------------HHHHHhcCCHHHHHHHhhhc
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEG----NACVKRPV------------LDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~A~~~f~~~ 156 (523)
+...+...|+.++|.+.+....+. .| +...+..+ ...+...|++++|...|++
T Consensus 69 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~- 145 (359)
T 3ieg_A 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK- 145 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-
Confidence 677788899999999999999875 34 44455444 4788899999999999998
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccc
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREE 233 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~ 233 (523)
... -.+.+..++..+...|.+.|++++|...|+...+ .+..+|..+..
T Consensus 146 ------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~---------- 196 (359)
T 3ieg_A 146 ------------------ILE-VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST---------- 196 (359)
T ss_dssp ------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHH----------
T ss_pred ------------------HHH-hCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------
Confidence 332 2334677899999999999999999999998753 46678888888
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCC-HHHHH------------HHHHHhhccCChhHHHHHHHHHHHhcCCchHHHH
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPN-TISLS------------GVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~------------~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 300 (523)
.|.+.|++++|...|++..+.. |+ ..++. .+...+.+.|+.++|...+..+.+..-.... .
T Consensus 197 --~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~- 270 (359)
T 3ieg_A 197 --LYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-Y- 270 (359)
T ss_dssp --HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-H-
T ss_pred --HHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-H-
Confidence 8889999999999999998743 33 22222 2255688899999999999998875321100 0
Q ss_pred hHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHHHHHHHHhC-C
Q 035847 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKM-P 378 (523)
Q Consensus 301 ~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m-~ 378 (523)
....|..+...|...|+. ++|..+|+...+. .| +...|..+...+.+.|++++|.+.+++. .
T Consensus 271 -----------~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 271 -----------TVRSKERICHCFSKDEKP--VEAIRICSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp -----------HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHccCH--HHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 012355677899999999 9999999999875 45 5789999999999999999999999884 3
Q ss_pred CCCC
Q 035847 379 FEPS 382 (523)
Q Consensus 379 ~~p~ 382 (523)
..|+
T Consensus 335 ~~p~ 338 (359)
T 3ieg_A 335 HNEN 338 (359)
T ss_dssp TCTT
T ss_pred cCCC
Confidence 4443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.59 E-value=9e-13 Score=129.44 Aligned_cols=294 Identities=12% Similarity=0.042 Sum_probs=227.3
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
|+..|..+-..+.+.|++++|+..|++..... +...+...|+++.|...++.+++.. +.+..++..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45677888889999999999999999987654 6677788999999999999999874 3367789999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC----chhHHHHH------------HHHHHhcCChHHH
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES----DLLVNNSL------------MDFYAKCRYLKVA 203 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----d~~~~~~l------------i~~~~k~g~~~~A 203 (523)
|.+.|++++|...|++ ... ..| +...+..+ ...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~-------------------~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKK-------------------VLK--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHHHTCHHHHHHHHHH-------------------HHT--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCChHHHHHHHHH-------------------HHh--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999 322 233 33444444 5788999999999
Q ss_pred HHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhH
Q 035847 204 HCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 204 ~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~ 280 (523)
...|+...+ .+...|..+.. .+.+.|++++|+..|++..+.. +.+..++..+...+...|+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 140 ITFLDKILEVCVWDAELRELRAE------------CFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 999998753 45677888888 8899999999999999998753 3467888899999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH-----hHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM-----EQYC 355 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~-----~ty~ 355 (523)
|.+.+....+..-.... .+..+.. .........+...+.+.|+. ++|...|+...+. .|+. ..|.
T Consensus 207 A~~~~~~a~~~~~~~~~-~~~~~~~----~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKR-CFAHYKQ----VKKLNKLIESAEELIRDGRY--TDATSKYESVMKT---EPSVAEYTVRSKE 276 (359)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHH----HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCccchH-HHHHHHH----HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhc---CCCchHHHHHHHH
Confidence 99999999875322111 0000000 00001122346678999999 9999999999876 3442 3355
Q ss_pred HHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 356 CMVDLLARAGQFDDTLNFMKKM-PFEPSSA-----------EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 356 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
.+...+...|++++|.+.+++. ...|+.. ..|+.+.|...+++.+++.|.+.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 6778999999999999999885 3456555 78999999999999999888765
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.58 E-value=1.1e-13 Score=137.20 Aligned_cols=267 Identities=10% Similarity=-0.079 Sum_probs=195.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
+...|..+-..+.+.|++++|+..|+++.+.. +...+...|+++.|.+.+..+++.. +.+..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45667777777777888888888887776654 5566667778888888888777764 4577889999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---C
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K---H 214 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~---~ 214 (523)
|.+.|++++|...|+++.-..... .......... .. ...+ ...+. .+..+.+.|++++|...|+.+.+ | +
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-AG-GAGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTT-GGGCC------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-hh-hhcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCccc
Confidence 999999999999999821000000 0000000000 00 0000 00111 23334488999999999998753 4 4
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
..+|..+.. .|.+.|++++|+..|++..... +.+..++..+...+...|++++|...++.+.+..
T Consensus 217 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 281 (368)
T 1fch_A 217 PDVQCGLGV------------LFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-- 281 (368)
T ss_dssp HHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 678888988 8899999999999999998753 2357789999999999999999999999988742
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC------------HhHHHHHHHHHH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA------------MEQYCCMVDLLA 362 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~------------~~ty~~li~~~~ 362 (523)
+.+..+|..+...|.+.|+. ++|...|+...+. .|+ ..+|..+..+|.
T Consensus 282 ---------------~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (368)
T 1fch_A 282 ---------------PGYIRSRYNLGISCINLGAH--REAVEHFLEALNM---QRKSRGPRGEGGAMSENIWSTLRLALS 341 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH---HHTC------CCCCCHHHHHHHHHHHH
T ss_pred ---------------CCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CCCCCCccccccchhhHHHHHHHHHHH
Confidence 22456889999999999999 9999999998764 332 588999999999
Q ss_pred hhCCHHHHHHHHHh
Q 035847 363 RAGQFDDTLNFMKK 376 (523)
Q Consensus 363 ~~g~~~~A~~~~~~ 376 (523)
+.|+.++|..+.++
T Consensus 342 ~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 342 MLGQSDAYGAADAR 355 (368)
T ss_dssp HHTCGGGHHHHHTT
T ss_pred HhCChHhHHHhHHH
Confidence 99999999988764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=2.2e-12 Score=125.23 Aligned_cols=270 Identities=11% Similarity=0.040 Sum_probs=219.6
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..|...+..+...+...|++++|+++|+++.... +...+...|+.++|..++..+.+.. +.+..++..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3467788889999999999999999999987665 6677788999999999999999864 44678899999
Q ss_pred HHHHhcC-CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-
Q 035847 138 DMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K- 213 (523)
Q Consensus 138 ~~~~~~g-~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~- 213 (523)
..|...| ++++|...|++ ... -.+.+..+|..+...|.+.|+.++|...|+...+ |
T Consensus 98 ~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 157 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSK-------------------ATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG 157 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHH-------------------HHT-TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhhhhHHHHHHHHHH-------------------HHH-hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc
Confidence 9999999 99999999998 332 1233567899999999999999999999998753 3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|..+.. .|...|++++|.+.|++..+.. +.+..++..+...+...|++++|...+..+.+..-
T Consensus 158 ~~~~~~~l~~------------~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 158 CHLPMLYIGL------------EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp CSHHHHHHHH------------HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 4567777888 8889999999999999998753 33568888999999999999999999999887421
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNF 373 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 373 (523)
..... .....+..+|..+...|...|+. ++|...|+...+. . ..+...+..+...+.+.|++++|.+.
T Consensus 225 ~~~~~--------~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 225 AIGNE--------VTVDKWEPLLNNLGHVCRKLKKY--AEALDYHRQALVL-I-PQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp TTSCS--------CTTTTCCHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH-S-TTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcccc--------ccccHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhh-C-ccchHHHHHHHHHHHHhccHHHHHHH
Confidence 10000 00023456899999999999999 9999999999875 2 33568899999999999999999999
Q ss_pred HHhC-CCCCC
Q 035847 374 MKKM-PFEPS 382 (523)
Q Consensus 374 ~~~m-~~~p~ 382 (523)
+++. ...|+
T Consensus 293 ~~~al~~~p~ 302 (330)
T 3hym_B 293 FHTALGLRRD 302 (330)
T ss_dssp HHTTTTTCSC
T ss_pred HHHHHccCCC
Confidence 9985 34554
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.56 E-value=2e-13 Score=135.43 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=183.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDM 139 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 139 (523)
+...|..+...+.+.|++++|+++|+++.... +...+...|++++|.+.++.+++.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34445555555555555555555555554432 4444455555555555555555542 4457889999999
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C---
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K--- 213 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~--- 213 (523)
|.+.|++++|...|+++. ++....... ........+++.+...|.+.|++++|...|+++.+ |
T Consensus 143 ~~~~g~~~~A~~~~~~al-----------~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 211 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWI-----------KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI 211 (365)
T ss_dssp HHHTTCHHHHHHHHHHHH-----------HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHccccHHHHHHHHHHHH-----------HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence 999999999999999820 000000000 00001234455678899999999999999998753 3
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcC
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~ 293 (523)
+..+|+.+.. .|.+.|++++|++.|++..+.. +.+..+|..+..++...|++++|.+.++.+.+..
T Consensus 212 ~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 277 (365)
T 4eqf_A 212 DPDLQTGLGV------------LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ- 277 (365)
T ss_dssp CHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 5778999988 8899999999999999998753 3357889999999999999999999999998752
Q ss_pred CchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-------------HhHHHHHHHH
Q 035847 294 QLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-------------MEQYCCMVDL 360 (523)
Q Consensus 294 ~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-------------~~ty~~li~~ 360 (523)
+.+..+|..+...|...|+. ++|...|+...+. .|+ ...|..+..+
T Consensus 278 ----------------p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 278 ----------------PGFIRSRYNLGISCINLGAY--REAVSNFLTALSL---QRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHH---HHCC------------CHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHCCCH--HHHHHHHHHHHHh---CcccCCCcccchhhhHHHHHHHHHHH
Confidence 12467899999999999999 9999999998864 333 6789999999
Q ss_pred HHhhCCHHHHHHHHHh
Q 035847 361 LARAGQFDDTLNFMKK 376 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~ 376 (523)
+...|+.+.+..+.++
T Consensus 337 ~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 337 LSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHTCHHHHHHHHTT
T ss_pred HHHcCcHHHHHHHHHh
Confidence 9999999999988776
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.51 E-value=1.3e-13 Score=136.89 Aligned_cols=292 Identities=14% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccC
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELK 109 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~ 109 (523)
+.|+++.|.++++.+ +.| .+|..|..++.+.|++++|++.|.+..... ++.++...|
T Consensus 15 ~~~~ld~A~~fae~~-----------------~~~--~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----------------NEP--AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----------------CCh--HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 456677777776654 234 499999999999999999999998764433 899999999
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
++++|...+....+. .+++.+.+.|+.+|.|.|+++++.++++. |+..+|+.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------------------------pn~~a~~~ 127 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------------------------PNNAHIQQ 127 (449)
T ss_dssp -----------------------------------CHHHHTTTTTC--------------------------C-------
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------------CcHHHHHH
Confidence 999999988877764 56789999999999999999999888765 34446666
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHH
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVL 269 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 269 (523)
+.+.|...|++++|...|+.+ ..|..|.. .+.+.|++++|++.++.+ .++.||..++
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~------------~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS------------TLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp ---------CTTTHHHHHHHT-----TCHHHHHH------------HHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH------------HHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 667777777777777777655 35666666 666666677777766666 2566666666
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-----------------CC-CCCcchHHHHHHHHHhcCCCch
Q 035847 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-----------------GL-GTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-----------------~~-~p~~~~~n~li~~~~~~g~~~~ 331 (523)
.+|...|+++.|......+ ...|+. ...++..| ++ ......|+-|--+|++.. +
T Consensus 185 ~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p-- 256 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-P-- 256 (449)
T ss_dssp HHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-H--
T ss_pred HHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-H--
Confidence 7777766666664332211 111111 11222222 23 334456666666666553 2
Q ss_pred HHHHHHHHHhHHhcCCcc------CHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC----------CCCCHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEP------AMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSA----------EPCNPDIAEHA 395 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p------~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~----------~~~~~~~~~~~ 395 (523)
++.++.++.-.+.-++.| +...|.-++-.|...++++.|...+-+-+ |+.. +-.|.++--++
T Consensus 257 ~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYka 334 (449)
T 1b89_A 257 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRA 334 (449)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHH
Confidence 333333333333335555 35678888888888888888887665542 2211 45666666666
Q ss_pred HHHHHhhCCC
Q 035847 396 ARHLFELEPL 405 (523)
Q Consensus 396 ~~~l~~~~~~ 405 (523)
..--++..|.
T Consensus 335 i~fyl~~~p~ 344 (449)
T 1b89_A 335 IQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHCGG
T ss_pred HHHHHhcCHH
Confidence 5555544443
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=1.1e-12 Score=127.27 Aligned_cols=261 Identities=8% Similarity=-0.090 Sum_probs=200.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|..+++.+.+.. ..+..+|..+...+.+.|++++|+..|++..+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD- 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 3445566666777888888888888877654 2356777777788888888888888887766532
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
+.+..++..+...|.+.|++++|...|++ ... -..
T Consensus 86 -------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~~~-~~~ 120 (327)
T 3cv0_A 86 -------------------------PKDIAVHAALAVSHTNEHNANAALASLRA-------------------WLL-SQP 120 (327)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-TST
T ss_pred -------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCC
Confidence 44677888999999999999999999998 221 011
Q ss_pred CchhHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 182 SDLLVNNSL--------------MD-FYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 182 ~d~~~~~~l--------------i~-~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
.+...+..+ .. .+.+.|++++|...++...+ .+...|..+.. .|.+.|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~------------~~~~~~~~ 188 (327)
T 3cv0_A 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV------------LYNLSNNY 188 (327)
T ss_dssp TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHHTTCH
T ss_pred ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH------------HHHHhccH
Confidence 112222222 22 37778999999999988753 36678888888 88999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
++|++.|++..+.. +.+..++..+...+...|+.++|.+.+..+.+.. +.+..+|..+...|
T Consensus 189 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 189 DSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-----------------PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------CCCHHHHHHHHHHH
Confidence 99999999998753 2357788899999999999999999999988743 22456788999999
Q ss_pred HhcCCCchHHHHHHHHHhHHhcCCccC-------------HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 324 GRCGAIQKNEGWRYFEMMKKEYNMEPA-------------MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~~g~~p~-------------~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...|+. ++|..+|+...+. .|+ ...|..+..++.+.|+.++|..++++.
T Consensus 251 ~~~g~~--~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 251 SNMSQY--DLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHTTCH--HHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHhccH--HHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999 9999999998765 344 678999999999999999999998764
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=2e-12 Score=128.11 Aligned_cols=222 Identities=10% Similarity=-0.042 Sum_probs=179.2
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
....+.+.|+++.|.+.++.+++.. +.+..+|..+...|.+.|++++|...|++ ... -.
T Consensus 71 ~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~ 129 (365)
T 4eqf_A 71 EGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQR-------------------CLE-LQ 129 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHh-cC
Confidence 4556778899999999999999874 45788999999999999999999999999 222 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-----------hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-----------LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-----------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
+.+..++..+...|.+.|++++|...|+++.+ |+ ...++.+.. .+.+.|++++|+
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~A~ 197 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK------------SPVDSSVLEGVK 197 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH------------HHhhhhhHHHHH
Confidence 33578899999999999999999999998753 22 122333455 888999999999
Q ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhc
Q 035847 248 EFFSRMIQTDMQ-PNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326 (523)
Q Consensus 248 ~lf~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~ 326 (523)
+.|+++.+.... ++..++..+...+...|++++|.+.++.+.+.. +.+..+|+.+...|...
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-----------------PEDYSLWNRLGATLANG 260 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHc
Confidence 999999885422 257889999999999999999999999998743 23567899999999999
Q ss_pred CCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 327 GAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|+. ++|...|+...+. .|+ ..+|..+...|.+.|++++|...+++.
T Consensus 261 g~~--~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 261 DRS--EEAVEAYTRALEI---QPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp TCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHhc---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999 9999999999875 455 788999999999999999999998875
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=3.9e-12 Score=132.71 Aligned_cols=340 Identities=11% Similarity=0.058 Sum_probs=232.1
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc--
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-- 100 (523)
..|..+-..+.+.|+++.|...+..+.+.. ..+..+|..+...|.+.|++++|++.|++....+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--------------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 456677778888999999999999998865 2477889999999999999999999999887654
Q ss_pred -------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCc----hhhHhh
Q 035847 101 -------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSL----LKHGKE 169 (523)
Q Consensus 101 -------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~----~~~~~~ 169 (523)
+...+...|+.++|.+.+. ... ..|+ ..+..+..+...+....|...++++.-...+. ......
T Consensus 92 ~~~~~~~la~~~~~~g~~~~A~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 166 (537)
T 3fp2_A 92 HSKALLRRASANESLGNFTDAMFDLS-VLS--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS 166 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH-HHh--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH
Confidence 5566677788888888775 221 2232 22334556666666777777777721100000 000000
Q ss_pred Hh------------hhhhhcCCCCCc-hhHHHHHHHHHHhc--------CChHHHHHHHhcCCC--CC-hhhHHHHHHhh
Q 035847 170 IH------------PHHLKKDDLESD-LLVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ--KH-LVSWNAMLAGY 225 (523)
Q Consensus 170 ~~------------~~~~~~~g~~~d-~~~~~~li~~~~k~--------g~~~~A~~vf~~m~~--~~-~~t~~~li~~~ 225 (523)
+. ....+.....+. ......+...+... |++++|..+|+.+.+ |+ ...+..+..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 246 (537)
T 3fp2_A 167 LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALAL 246 (537)
T ss_dssp HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence 00 000000011111 11333333333222 478899999988764 43 22333333222
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
...|. .+...|++++|+..|++..+. .|+..++..+...+...|+++.|.+.+..+.+..
T Consensus 247 ~~~g~-----~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------- 306 (537)
T 3fp2_A 247 CYTGI-----FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN------------- 306 (537)
T ss_dssp HHHHH-----HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-------------
T ss_pred HHHHH-----HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-------------
Confidence 22222 788899999999999999885 5668888889999999999999999999998743
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
+.+..+|..+...|...|+. ++|...|+...+. .|+ ...|..+...+.+.|++++|.+++++. ...|+.
T Consensus 307 ----~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 307 ----PEYPPTYYHRGQMYFILQDY--KNAKEDFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ----CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 22456789999999999999 9999999999875 343 678999999999999999999999885 345555
Q ss_pred C-----------CCCCHHHHHHHHHHHHhhCCCCCcce
Q 035847 384 A-----------EPCNPDIAEHAARHLFELEPLSSGKV 410 (523)
Q Consensus 384 ~-----------~~~~~~~~~~~~~~l~~~~~~~~~~~ 410 (523)
. ..|+.+.|...+++.++..|.+...+
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 5 78999999999999999988766543
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.43 E-value=7.3e-13 Score=131.44 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=117.8
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.++++++. +..+|+.|..++.+.|++++|...|.. .+|..+|..++.++.+
T Consensus 19 ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-------------------a~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 19 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-------------------ADDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-------------------CCCHHHHHHHHHHHHh
Confidence 577888888872 335899999999999999999988742 3477799999999999
Q ss_pred cCCchHHHHHHHHhhHcc--------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 83 LGYYEEIVNLFYLLIDEG--------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g--------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
.|++++|+..++..++.. ++.++.+.|++.++.+++. .|+..+|+.+.+.|...|.+++|...|.
T Consensus 74 ~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 74 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999777665432 7779999999999998885 4788899999999999999999999999
Q ss_pred hccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCcccc
Q 035847 155 EKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i 234 (523)
+ + ..|..|.+.+.+.|++++|.+.+..+. ++.+|..++.
T Consensus 147 ~-------------------a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~----------- 185 (449)
T 1b89_A 147 N-------------------V---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCF----------- 185 (449)
T ss_dssp H-------------------T---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHH-----------
T ss_pred H-------------------h---------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHH-----------
Confidence 8 3 368999999999999999999999883 7889999999
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-------
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------- 307 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------- 307 (523)
+|+..|+++.|......+. +.|+. ...++..|.+.|.++++..+++...... .-....++-|--.|
T Consensus 186 -aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k 258 (449)
T 1b89_A 186 -ACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 258 (449)
T ss_dssp -HHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHH
Confidence 8888888888865554322 34444 4467788888888888888887776433 23344444443333
Q ss_pred ------------CCCC------CcchHHHHHHHHHhcCCCchHHHHH
Q 035847 308 ------------GLGT------GSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 308 ------------~~~p------~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
+++| +...|.-+.-.|...+++ +.|..
T Consensus 259 ~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~--d~A~~ 303 (449)
T 1b89_A 259 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY--DNAII 303 (449)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH--HHHHH
Confidence 2233 688899999999999999 88766
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.43 E-value=6.7e-12 Score=121.66 Aligned_cols=239 Identities=8% Similarity=-0.010 Sum_probs=197.8
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~ 81 (523)
.+++|+.+|+++.+.. +.+..++..+..++...|+++.|...++.+.+.. ..+..+|..+...|.
T Consensus 36 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------cCCHHHHHHHHHHHH
Confidence 4689999999988753 2366788888889999999999999999998864 346788999999999
Q ss_pred hcCCchHHHHHHHHhhHcc--------HH--------------HH--hhccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 82 VLGYYEEIVNLFYLLIDEG--------VY--------------KA--CSELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g--------ll--------------~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..|++++|++.|++..... .+ .. +...|+++.|.+.+..+.+.. +.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 9999999999999987654 11 22 777889999999999998874 44678899999
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ ... -...+..++..+...|.+.|+.++|...|++..+ .+
T Consensus 180 ~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRR-------------------AVE-LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhccHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999998 322 1234577899999999999999999999998643 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHhhccCChhHHHH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-----------NTISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
..+|..+.. .|.+.|++++|.+.|++.......+ +..++..+..++.+.|+.+.|..
T Consensus 240 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 240 VRVMYNMAV------------SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHH------------HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 678888888 8899999999999999988743221 46788899999999999999999
Q ss_pred HHHHH
Q 035847 284 IHGYV 288 (523)
Q Consensus 284 i~~~~ 288 (523)
++...
T Consensus 308 ~~~~~ 312 (327)
T 3cv0_A 308 TYAQN 312 (327)
T ss_dssp HTTCC
T ss_pred HHHHH
Confidence 87654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.42 E-value=8.1e-12 Score=123.53 Aligned_cols=239 Identities=10% Similarity=0.019 Sum_probs=183.4
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. ..+..+|..+...|..
T Consensus 80 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 80 LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--------------PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHH
Confidence 567777777777653 2355567777777777888888888877777654 2367788888888888
Q ss_pred cCCchHHHHHHHHhhHcc---------H---------------HHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHH
Q 035847 83 LGYYEEIVNLFYLLIDEG---------V---------------YKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVL 137 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------l---------------l~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 137 (523)
.|++++|++.|+++.... . +..+...|+++.|.+.+..+.+..-.. +..++..+.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 888888888888876543 1 344447788888888888888764211 467888888
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KH 214 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~ 214 (523)
..|.+.|++++|...|++ ... -.+.+..+++.+...|.+.|++++|...|+...+ .+
T Consensus 225 ~~~~~~g~~~~A~~~~~~-------------------al~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTA-------------------ALS-VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp HHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHH-------------------HHH-hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999888 222 1233577899999999999999999999998653 35
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC----------CHHHHHHHHHHhhccCChhHHHHH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP----------NTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p----------~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
..+|..+.. .|.+.|++++|...|++..+..... ...+|..+..++...|+.+.|..+
T Consensus 285 ~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 285 IRSRYNLGI------------SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 678888888 8899999999999999987632111 267899999999999999999998
Q ss_pred HHHH
Q 035847 285 HGYV 288 (523)
Q Consensus 285 ~~~~ 288 (523)
+...
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=2.6e-11 Score=116.49 Aligned_cols=246 Identities=11% Similarity=0.036 Sum_probs=184.5
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc----------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG----------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g----------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
|+-....|++..|+..++...... +.+++...|+.+.|...++. .-.|+..++..+...|...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344556688888888776653322 66778888888888765543 1356777888889999999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhh
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGY 225 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~ 225 (523)
++|.+.+++ +-..+..|+ ..++..+-..|.+.|++++|.+.|+. ..+...+..+..
T Consensus 82 ~~A~~~l~~-------------------ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~-- 138 (291)
T 3mkr_A 82 DAIVAELDR-------------------EMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQ-- 138 (291)
T ss_dssp HHHHHHHHH-------------------HHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHH--
T ss_pred HHHHHHHHH-------------------HHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHH--
Confidence 999999998 543255564 55666677889999999999999998 456778888888
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH---HHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL---SGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 302 (523)
.|.+.|++++|.+.|+++.+.. |+...+ ...+..+...|+.++|..+++.+.+..
T Consensus 139 ----------~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---------- 196 (291)
T 3mkr_A 139 ----------ILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---------- 196 (291)
T ss_dssp ----------HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----------
T ss_pred ----------HHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC----------
Confidence 8889999999999999998864 664322 122333445689999999999998752
Q ss_pred HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHH-HHHHHHhC-CC
Q 035847 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDD-TLNFMKKM-PF 379 (523)
Q Consensus 303 li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~-A~~~~~~m-~~ 379 (523)
+.+...|+.+..+|.+.|++ ++|...|++..+. .| +..++..++..+...|+.++ +.+++++. ..
T Consensus 197 -------p~~~~~~~~la~~~~~~g~~--~eA~~~l~~al~~---~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 197 -------SPTLLLLNGQAACHMAQGRW--EAAEGVLQEALDK---DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -------CCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 23567889999999999999 9999999998765 45 46788889999999999876 56677653 24
Q ss_pred CCCC
Q 035847 380 EPSS 383 (523)
Q Consensus 380 ~p~~ 383 (523)
.|+.
T Consensus 265 ~P~~ 268 (291)
T 3mkr_A 265 HRSH 268 (291)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.37 E-value=4e-11 Score=115.15 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=197.0
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC--cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------HHHHh
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------VYKAC 105 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ll~~~ 105 (523)
..|++..|....+..... .|+ ....-.+..+|...|++++|+..++...... +...+
T Consensus 11 ~~g~y~~ai~~~~~~~~~---------------~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~ 75 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---------------SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYL 75 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---------------SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccC---------------CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHH
Confidence 467777777765543221 222 3455667889999999999998775431111 66777
Q ss_pred hccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch
Q 035847 106 SELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL 184 (523)
Q Consensus 106 ~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~ 184 (523)
...++.+.|.+.++.+...+..|+ ...+..+-..|.+.|++++|...|++ ..+.
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------~~~~ 130 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------GDSL 130 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------------------------CCSH
T ss_pred cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------------------------CCCH
Confidence 888999999999999998876665 45566666999999999999999876 3567
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
..+..+...|.+.|+.++|.+.|+.+.+ |+.. ...+..++.. .+...|++++|+.+|+++.+. .+.+.
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~--------l~~~~~~~~eA~~~~~~~l~~-~p~~~ 200 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVS--------LAAGGEKLQDAYYIFQEMADK-CSPTL 200 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHH--------HHHCTTHHHHHHHHHHHHHHH-SCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHH--------HHhCchHHHHHHHHHHHHHHh-CCCcH
Confidence 7899999999999999999999999863 5543 2223332211 344568999999999999987 44578
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHH-HHHHHHHh
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNE-GWRYFEMM 341 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~-a~~~~~~m 341 (523)
..++.+..++.+.|++++|.+.++.+++.. +-|..+|+.++..+...|+. ++ +.++++++
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~-----------------p~~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~ 261 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKD-----------------SGHPETLINLVVLSQHLGKP--PEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence 889999999999999999999999988743 22556899999999999998 76 57899988
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
.+. .|+... +.+...+.+.++++..
T Consensus 262 ~~~---~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 262 KDA---HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHH---CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHh---CCCChH---HHHHHHHHHHHHHHHH
Confidence 765 566432 3345556666666654
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.23 E-value=3.1e-08 Score=102.30 Aligned_cols=317 Identities=13% Similarity=0.024 Sum_probs=180.7
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccC----CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPK----LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
++|+..|++-.+.| +...+..|-..+.. .++.++|...+......| +...+..|-..
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~ 120 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----------------LPQAQQNLGVM 120 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHH
Confidence 44555555544432 22333333333333 455555555555554433 33444455555
Q ss_pred HHh----cCCchHHHHHHHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh--
Q 035847 80 YNV----LGYYEEIVNLFYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK-- 142 (523)
Q Consensus 80 ~~~----~g~~~~A~~l~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 142 (523)
|.. .+++++|+..|++..+.| +-..+.. .++.+.|.+.+....+.| +...+..|-.+|.+
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence 555 556666666666655554 2222222 456666666666665543 44555555556655
Q ss_pred --cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCh
Q 035847 143 --CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHL 215 (523)
Q Consensus 143 --~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~ 215 (523)
.++.++|...|++ ..+. | +...+..|-.+|.. .++.++|...|+...+ .+.
T Consensus 198 g~~~~~~~A~~~~~~------------------a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 255 (490)
T 2xm6_A 198 GVERNDAISAQWYRK------------------SATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS 255 (490)
T ss_dssp SSCCCHHHHHHHHHH------------------HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH
T ss_pred CCCcCHHHHHHHHHH------------------HHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5666666666665 2333 2 34566667777776 6788888888876543 344
Q ss_pred hhHHHHHHhhhhcCCccccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-----CChhHHHHHHH
Q 035847 216 VSWNAMLAGYALGGFREEITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-----KGFKLGKEIHG 286 (523)
Q Consensus 216 ~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~i~~ 286 (523)
.++..+-. .|.. .+++++|++.|+...+.| +...+..+-..+... ++.++|...+.
T Consensus 256 ~a~~~lg~------------~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 256 IAQFRLGY------------ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHH------------HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHH------------HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 55555555 4444 677888888888877654 334444455555554 77888888888
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC---CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG---AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g---~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
...+.| +...+..+-..|...| +. ++|.++|+...+. | +...+..|-..|..
T Consensus 321 ~a~~~~-------------------~~~a~~~lg~~y~~~g~~~~~--~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 321 KSAEQG-------------------DATAQANLGAIYFRLGSEEEH--KKAVEWFRKAAAK-G---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHHHTT-------------------CHHHHHHHHHHHHHSCCHHHH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred HHHhcC-------------------CHHHHHHHHHHHHhCCCcccH--HHHHHHHHHHHHC-C---CHHHHHHHHHHHHc
Confidence 777754 2234445555555544 45 6777777766653 2 45566666666666
Q ss_pred ----hCCHHHHHHHHHhCCCCCCCC--------------CCCCHHHHHHHHHHHHhhCC
Q 035847 364 ----AGQFDDTLNFMKKMPFEPSSA--------------EPCNPDIAEHAARHLFELEP 404 (523)
Q Consensus 364 ----~g~~~~A~~~~~~m~~~p~~~--------------~~~~~~~~~~~~~~l~~~~~ 404 (523)
.+++++|.+++++.--..+.. ..+|.+.|...+++..+..|
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 677777777766531111111 25677777777777777664
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.21 E-value=1.3e-09 Score=101.39 Aligned_cols=197 Identities=10% Similarity=0.009 Sum_probs=146.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...|...|++++|++.|++..... +.+..++..+...|.+.|++++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A 90 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--------------------------PSSADAHAALAVVFQTEMEPKLA 90 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------------CChHHHHHHHHHHHHHcCCHHHH
Confidence 4667777778888888888888887766532 44667888888899999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-ChhhHHHHHHh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ----K-HLVSWNAMLAG 224 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~----~-~~~t~~~li~~ 224 (523)
...|++ ... -...+..++..+...|.+.|++++|.+.|+...+ | +...|..+..
T Consensus 91 ~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~- 149 (252)
T 2ho1_A 91 DEEYRK-------------------ALA-SDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL- 149 (252)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH-
T ss_pred HHHHHH-------------------HHH-HCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH-
Confidence 999988 222 1223567788888888889999999988887654 3 3356777777
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.+.|++++|.+.|++..+.. +.+..++..+...+...|+.++|...++.+.+..
T Consensus 150 -----------~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------------ 205 (252)
T 2ho1_A 150 -----------VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG------------ 205 (252)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------------
T ss_pred -----------HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 7788888999999888887753 2246677777788888888888888887776532
Q ss_pred hhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.+...|..+...|...|+. ++|.++++.+.+.
T Consensus 206 -----~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 206 -----GQNARSLLLGIRLAKVFEDR--DTAASYGLQLKRL 238 (252)
T ss_dssp -----CCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred -----cCcHHHHHHHHHHHHHccCH--HHHHHHHHHHHHH
Confidence 22445677777788888888 8888888888765
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.21 E-value=1e-09 Score=99.80 Aligned_cols=198 Identities=8% Similarity=-0.081 Sum_probs=120.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|..+...+.+.|++++|+..|++..... +.+..++..+...|...|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~ 60 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--------------------------PKNELAWLVRAEIYQYLKVNDK 60 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHcCChHH
Confidence 44566666777777777777777776655432 3345566777777777777777
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcCCC----CC-hhhHHHHH
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQ----KH-LVSWNAML 222 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~-g~~~~A~~vf~~m~~----~~-~~t~~~li 222 (523)
|...|++ ... -...+..++..+...|... |++++|...|+.+.+ |+ ...|..+.
T Consensus 61 A~~~~~~-------------------a~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 120 (225)
T 2vq2_A 61 AQESFRQ-------------------ALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120 (225)
T ss_dssp HHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred HHHHHHH-------------------HHH-hCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence 7777776 221 1122455666667777777 777777777766543 21 34555565
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhH
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIA 302 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~ 302 (523)
. .+.+.|++++|++.|+++.+.. +.+...+..+...+...|+.++|.+.++.+.+..-.
T Consensus 121 ~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------- 179 (225)
T 2vq2_A 121 I------------CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-------- 179 (225)
T ss_dssp H------------HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--------
T ss_pred H------------HHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------
Confidence 6 6666777777777777666532 123555666666666666666666666666553210
Q ss_pred HHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 303 LISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 303 li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
.+...|..+...+...|+. +++..+++.+.+
T Consensus 180 --------~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~ 210 (225)
T 2vq2_A 180 --------LQADDLLLGWKIAKALGNA--QAAYEYEAQLQA 210 (225)
T ss_dssp --------CCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHhcCcH--HHHHHHHHHHHH
Confidence 1334455555666666666 666666666654
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.20 E-value=5.6e-09 Score=108.99 Aligned_cols=355 Identities=10% Similarity=0.096 Sum_probs=228.7
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
|..+|..++.. .+.|+++.|..+++.+.+.- ..+...|..++..+.+.|++++|..+|++.....
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--------------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF--------------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 56688888884 67899999999999988753 2366789999999999999999999999987653
Q ss_pred ----HHHHh-----hccCChHHHHH----HHHHHHHh-cCCC-CceeHhHHHHHHHh---------cCCHHHHHHHhhhc
Q 035847 101 ----VYKAC-----SELKDHRVGKD----VYDYMISI-KFEG-NACVKRPVLDMFIK---------CGRMEMASGEFEEK 156 (523)
Q Consensus 101 ----ll~~~-----~~~~~~~~a~~----~~~~m~~~-g~~p-~~~~~~~li~~~~~---------~g~~~~A~~~f~~~ 156 (523)
+-..+ ...|+.+.|++ +|+..+.. |..| +...|...+....+ .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 11111 23566666655 77766543 5554 45677777777655 78899999999994
Q ss_pred cccccC-c------------------------------hhhHhhHhhh------hhhcC--CCCCc--------hhHHHH
Q 035847 157 DFSNLS-L------------------------------LKHGKEIHPH------HLKKD--DLESD--------LLVNNS 189 (523)
Q Consensus 157 ~~~~~~-~------------------------------~~~~~~~~~~------~~~~~--g~~~d--------~~~~~~ 189 (523)
.. .+. . +..+..++.. .++.. .+.|+ ...|..
T Consensus 157 l~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~ 235 (530)
T 2ooe_A 157 CV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKK 235 (530)
T ss_dssp TT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHH
T ss_pred Hh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHH
Confidence 32 211 1 1111111111 11110 02333 245555
Q ss_pred HHHHHHhc----CCh----HHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhc-------cCCch-------
Q 035847 190 LMDFYAKC----RYL----KVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQ-------YGDGE------- 244 (523)
Q Consensus 190 li~~~~k~----g~~----~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~-------~g~~~------- 244 (523)
.+...-.. ++. ..|..+|++..+ | +...|..+.. .+.+ .|+++
T Consensus 236 ~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~------------~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 236 YIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ------------YLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp HHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH------------HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhchhhhhccchhhhhhhhH
Confidence 55443322 222 255566666543 3 4567777776 5554 68887
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHH
Q 035847 245 TALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDM 322 (523)
Q Consensus 245 ~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~ 322 (523)
+|..+|++..+. +.| +...|..+...+.+.|+++.|.++++.+++. .|+ + ...|......
T Consensus 304 ~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~---------------~~~~~~~~~~~~ 365 (530)
T 2ooe_A 304 EAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDI---------------DPTLVYIQYMKF 365 (530)
T ss_dssp HHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS---------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc---------------CchHHHHHHHHH
Confidence 899999998752 345 4677888888899999999999999999873 221 1 1367778888
Q ss_pred HHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH-HHhhCCHHHHHHHHHhC-CCCCCCC-----------CCCC
Q 035847 323 YGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL-LARAGQFDDTLNFMKKM-PFEPSSA-----------EPCN 388 (523)
Q Consensus 323 ~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~-~~~~g~~~~A~~~~~~m-~~~p~~~-----------~~~~ 388 (523)
+.+.|+. ++|..+|+...+. .|+ ...|...... +...|+.++|..++++. ...|+.. ..|+
T Consensus 366 ~~~~~~~--~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 366 ARRAEGI--KSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHH--HHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred HHHhcCH--HHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence 8888888 8888888887653 333 2333222222 33578888888888763 3445543 6788
Q ss_pred HHHHHHHHHHHHhhCCCCCc----ceeEEEecCCCCchHHHH
Q 035847 389 PDIAEHAARHLFELEPLSSG----KVHSFIAGDTSHSLVHKI 426 (523)
Q Consensus 389 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 426 (523)
.+.|+..+++.+...|.++. .|..++.-...+|..+.+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888877665543 343333333445555554
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.20 E-value=1.3e-10 Score=109.69 Aligned_cols=254 Identities=10% Similarity=-0.067 Sum_probs=182.0
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCC
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~ 110 (523)
.....++++.|...+..+.+.....+ ..+..+|..+...|...|++++|+..|++.....
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------- 73 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTD----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIR---------- 73 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCH----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred ccCccchHHHHHHHHHHHHhcccccC----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC----------
Confidence 34456789999999999887532100 1256788889999999999999999998877643
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~l 190 (523)
+.+..+|..+...|.+.|++++|...|++ ... -.+.+..++..+
T Consensus 74 ----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------al~-~~~~~~~~~~~l 117 (275)
T 1xnf_A 74 ----------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDS-------------------VLE-LDPTYNYAHLNR 117 (275)
T ss_dssp ----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCTHHHHHH
T ss_pred ----------------CCcHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHh-cCccccHHHHHH
Confidence 44678889999999999999999999998 222 122357788999
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
...|.+.|++++|...|+.+. .|+...+...+. .+...|++++|+..|++..... .++...+. +
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY------------LAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-I 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-H
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH------------HHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-H
Confidence 999999999999999998875 355555555555 5556789999999998877652 34444444 6
Q ss_pred HHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCc
Q 035847 269 LAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNME 348 (523)
Q Consensus 269 l~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~ 348 (523)
...+...++.+.|.+.+....+...... ..+..+|..+...|...|+. ++|..+|+...+. .
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~---~ 245 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLA-------------EHLSETNFYLGKYYLSLGDL--DSATALFKLAVAN---N 245 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHH-------------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT---C
T ss_pred HHHHHHhcCHHHHHHHHHHHhccccccc-------------ccccHHHHHHHHHHHHcCCH--HHHHHHHHHHHhC---C
Confidence 6667777778888887776654211100 01246788899999999999 9999999998753 5
Q ss_pred cCHhHHHHHHHHHHhhCCHHHHHHHH
Q 035847 349 PAMEQYCCMVDLLARAGQFDDTLNFM 374 (523)
Q Consensus 349 p~~~ty~~li~~~~~~g~~~~A~~~~ 374 (523)
|+. +.....++...|++++|.+-+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 643 223355677888888887664
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=1.5e-09 Score=101.00 Aligned_cols=195 Identities=12% Similarity=0.027 Sum_probs=160.1
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
...+..+...|...|++++|...|++ ... ....+..++..+...|.+.|++++|...|++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~-------------------al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRK-------------------ALE-IDPSSADAHAALAVVFQTEMEPKLADEEYRK 96 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-------------------HHh-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677888889999999999999988 322 1234577889999999999999999999987
Q ss_pred CCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 210 IKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 210 m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
..+ .+...|..+.. .|.+.|++++|+++|+++...+..| +...+..+...+...|++++|.+.+
T Consensus 97 a~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 97 ALASDSRNARVLNNYGG------------FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCcCcHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 643 36678888888 8889999999999999998744556 4567778888899999999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG 365 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g 365 (523)
..+.+.. +.+...|..+...|...|+. ++|..+|+...+. ...+...+..+...+.+.|
T Consensus 165 ~~~~~~~-----------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 165 EKSLRLN-----------------RNQPSVALEMADLLYKEREY--VPARQYYDLFAQG--GGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHC-----------------SCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcC-----------------cccHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcc
Confidence 9988753 12456788899999999999 9999999998753 2345678888889999999
Q ss_pred CHHHHHHHHHhC
Q 035847 366 QFDDTLNFMKKM 377 (523)
Q Consensus 366 ~~~~A~~~~~~m 377 (523)
+.++|.++++++
T Consensus 224 ~~~~A~~~~~~~ 235 (252)
T 2ho1_A 224 DRDTAASYGLQL 235 (252)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988875
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.17 E-value=3.8e-10 Score=106.38 Aligned_cols=215 Identities=7% Similarity=-0.049 Sum_probs=156.8
Q ss_pred hhHHHHHHHHhhhCCCC--C-CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPD--E-CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
+++|+..|+++.+.... | +..++..+...+...|+++.|...+....+.. ..+..+|..+...
T Consensus 21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~ 86 (275)
T 1xnf_A 21 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------------PDMPEVFNYLGIY 86 (275)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHH
Confidence 67899999999886421 1 45678888889999999999999999998875 2467899999999
Q ss_pred HHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 80 YNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
|.+.|++++|++.|++..... +.+..++..+...|.+.|++++|...|++
T Consensus 87 ~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~---- 136 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVLELD--------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLA---- 136 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred HHHccCHHHHHHHHHHHHhcC--------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHH----
Confidence 999999999999999877643 34567788888888888888888888887
Q ss_pred ccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHHHHHhhhhcCCccccch
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK---QKHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~---~~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
... ..|+.......+..+.+.|+.++|...|+... .++...|+ +.. .
T Consensus 137 ---------------a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~------------~ 186 (275)
T 1xnf_A 137 ---------------FYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVE------------F 186 (275)
T ss_dssp ---------------HHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHH------------H
T ss_pred ---------------HHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHH------------H
Confidence 222 23444444445555566788888888886543 23334444 455 5
Q ss_pred hhccCCchHHHHHHHHHHhcCCC--C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQ--P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+...++.++|++.+++....... | +..++..+...+...|+.++|...++...+.
T Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 187 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 56667778888888777553211 1 1466777777888888888888888887753
No 36
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.15 E-value=1.9e-09 Score=98.01 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=161.3
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+..++..+...|...|++++|...|++ ... -...+..++..+...|...|+.++|...|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 66 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIED-------------------ALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHH-------------------HHH-hCccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence 456788889999999999999999998 322 123457789999999999999999999998
Q ss_pred cCCC---CChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHH
Q 035847 209 KIKQ---KHLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKE 283 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 283 (523)
...+ .+..+|..+.. .|... |++++|++.|+++.+.+..|+ ...+..+...+...|++++|.+
T Consensus 67 ~a~~~~~~~~~~~~~l~~------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 67 QALSIKPDSAEINNNYGW------------FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHCTTCHHHHHHHHH------------HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHH------------HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8753 46678888888 88899 999999999999988444454 5678888889999999999999
Q ss_pred HHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 284 IHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 284 i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
.+..+.+.. +.+...|..+...|...|+. ++|..+|+...+. .-..+...+..+...+..
T Consensus 135 ~~~~~~~~~-----------------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 194 (225)
T 2vq2_A 135 YLKRSLAAQ-----------------PQFPPAFKELARTKMLAGQL--GDADYYFKKYQSR-VEVLQADDLLLGWKIAKA 194 (225)
T ss_dssp HHHHHHHHS-----------------TTCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----------------CCCchHHHHHHHHHHHcCCH--HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHh
Confidence 999988743 12456788899999999999 9999999998875 211457778888888899
Q ss_pred hCCHHHHHHHHHhC
Q 035847 364 AGQFDDTLNFMKKM 377 (523)
Q Consensus 364 ~g~~~~A~~~~~~m 377 (523)
.|+.++|..+++.+
T Consensus 195 ~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 195 LGNAQAAYEYEAQL 208 (225)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHH
Confidence 99999999888775
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.15 E-value=4.8e-10 Score=104.43 Aligned_cols=209 Identities=11% Similarity=-0.002 Sum_probs=131.9
Q ss_pred chhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMM 77 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li 77 (523)
.+++|+..|++..... ++...|..+..++...|+++.|...+....+..... .++ ..+|..+.
T Consensus 20 ~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 20 QFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-----------RADYKVISKSFARIG 86 (258)
T ss_dssp CHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-----------ccchHHHHHHHHHHH
Confidence 4689999999998877 788899999999999999999999999988753200 111 57889999
Q ss_pred HHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhcc
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKD 157 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 157 (523)
..|.+.|++++|+..|++..... |+ -..+.+.|++++|...+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~---------------------------~~-------~~~~~~~~~~~~a~~~~~~-- 130 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH---------------------------RT-------ADILTKLRNAEKELKKAEA-- 130 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------------CC-------HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHcccHHHHHHHHHHHHhcC---------------------------ch-------hHHHHHHhHHHHHHHHHHH--
Confidence 99999999999999998877632 22 1234444555555555555
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI 234 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i 234 (523)
... ....+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 131 -----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~----------- 181 (258)
T 3uq3_A 131 -----------------EAY-VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAA----------- 181 (258)
T ss_dssp -----------------HHH-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----------
T ss_pred -----------------HHH-cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHH-----------
Confidence 222 1112334455555555555555555555554431 23444555555
Q ss_pred chhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 235 TGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 235 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|++..+.. +.+..+|..+..++...|+.++|.+.++...+
T Consensus 182 -~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 182 -ALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555666666665555432 12345555555555556666666655555544
No 38
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=4.9e-09 Score=115.91 Aligned_cols=236 Identities=8% Similarity=0.010 Sum_probs=160.5
Q ss_pred CCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCC--CcchHHH--------------HhcCCCCCCcchHHHHHHHHH
Q 035847 18 PDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGV--ELCAFLG--------------MFEKMPERNVFSWTSMMGMYN 81 (523)
Q Consensus 18 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~--------------~f~~~~~~~~~~~~~li~~~~ 81 (523)
..|+.+ +..+++|...|+..++.++++.+...+- ..+..+. +-+-....|-....-+-..+.
T Consensus 983 ~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 983 QDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAI 1060 (1630)
T ss_pred cCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHH
Confidence 345554 4466777778888888888887773321 0011111 000000112222334556777
Q ss_pred hcCCchHHHHHHHHhhHcc-HHHHhh-ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhc---
Q 035847 82 VLGYYEEIVNLFYLLIDEG-VYKACS-ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEK--- 156 (523)
Q Consensus 82 ~~g~~~~A~~l~~~m~~~g-ll~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~--- 156 (523)
+.|++++|+.+|++..... .+..+. ..+++++|.++.++. -+..+|..+-.++.+.|++++|...|.++
T Consensus 1061 ~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDP 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcCCh
Confidence 8899999999998865433 233333 677888888888764 34678889999999999999999999884
Q ss_pred --------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhc
Q 035847 157 --------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALG 228 (523)
Q Consensus 157 --------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~ 228 (523)
.+...|.++++.+.+....+. .++..+.+.+..+|+|.+++++..... ..++...|..+-.
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~---~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd----- 1203 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD----- 1203 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---cccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH-----
Confidence 566667777777777765554 344445556888888888888655443 3556666776666
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.|...|++++|..+|... ..|..+...+.+.|+++.|.+..+..
T Consensus 1204 -------~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1204 -------RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred -------HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 777888899999998874 48888888899999988888887765
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.15 E-value=3.5e-09 Score=99.63 Aligned_cols=227 Identities=10% Similarity=-0.002 Sum_probs=160.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHH
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGE 152 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 152 (523)
+-..-..+.+.|++++|+..|++..+.. +.+..++..+...|.+.|++++|...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~ 59 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--------------------------YNSPYIYNRRAVCYYELAKYDLAQKD 59 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------------------CCCSTTHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3344455666666666666666655432 33455888888899999999999999
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhh
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESD--LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYAL 227 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~ 227 (523)
|+++ ++. ...|+ ...|..+-..|.+.|+.++|...|+...+ .+..+|..+-.
T Consensus 60 ~~~a------------------~~~-~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~---- 116 (272)
T 3u4t_A 60 IETY------------------FSK-VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS---- 116 (272)
T ss_dssp HHHH------------------HTT-SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH----
T ss_pred HHHH------------------Hhc-cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH----
Confidence 9881 221 22222 33478888889999999999999887643 35567888888
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISI 306 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 306 (523)
.|.+.|++++|++.|++..+. .|+ ..++..+-..+...+++++|.+.++.+.+..
T Consensus 117 --------~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------------- 172 (272)
T 3u4t_A 117 --------YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-------------- 172 (272)
T ss_dssp --------HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------
T ss_pred --------HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------
Confidence 888899999999999888765 443 4555555424444558999999998887742
Q ss_pred hCCCCCcchHHHHHHHHHhcCC---CchHHHHHHHHHhHHhcCCccCH------hHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 307 QGLGTGSFVWNSLIDMYGRCGA---IQKNEGWRYFEMMKKEYNMEPAM------EQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 307 y~~~p~~~~~n~li~~~~~~g~---~~~~~a~~~~~~m~~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+.+...|..+...+...|+ . ++|...|+...+...-.|+. ..|..+-..|.+.|++++|.+.+++.
T Consensus 173 ---p~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 173 ---PNIYIGYLWRARANAAQDPDTKQ--GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp ---TTCHHHHHHHHHHHHHHSTTCSS--CTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHcCcchhh--HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234566667777777787 7 77888888877653334552 57778888888999999998888774
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.7e-09 Score=100.58 Aligned_cols=209 Identities=8% Similarity=0.036 Sum_probs=162.7
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc-CCCCCc--
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK-DDLESD-- 183 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~d-- 183 (523)
..|++++|.+.+...++.. .+..++..+...|...|++++|...|+++ ++. ....++
T Consensus 17 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------------~~~~~~~~~~~~ 76 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDA------------------VEQGREMRADYK 76 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHHHHHTTCCHH
T ss_pred HhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHhCcccccchH
Confidence 3344444444444444444 77889999999999999999999999981 111 011122
Q ss_pred --hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 184 --LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 184 --~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
..++..+...|.+.|++++|...|+...+ |+. . .+.+.|++++|+..|+.+... .
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~------------~~~~~~~~~~a~~~~~~~~~~--~ 135 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------D------------ILTKLRNAEKELKKAEAEAYV--N 135 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------H------------HHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------H------------HHHHHhHHHHHHHHHHHHHHc--C
Confidence 57889999999999999999999998753 442 2 455678899999999998874 3
Q ss_pred C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 035847 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYF 338 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~ 338 (523)
| +...+..+...+...|++++|.+.++.+.+.. +.+..+|..+...|...|+. ++|...|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~~~~l~~~~~~~~~~--~~A~~~~ 196 (258)
T 3uq3_A 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----------------PEDARGYSNRAAALAKLMSF--PEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------cccHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 4 45677788888999999999999999998743 22456889999999999999 9999999
Q ss_pred HHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 339 EMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 339 ~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+...+. . ..+...|..+...+.+.|++++|.+.+++.
T Consensus 197 ~~al~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 197 NKAIEK-D-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh-C-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999875 2 334788999999999999999999998874
No 41
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=2.6e-08 Score=103.92 Aligned_cols=339 Identities=9% Similarity=0.046 Sum_probs=217.7
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH---------------------H
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG---------------------M 61 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---------------------~ 61 (523)
+++|..+|+++... .+-+...|..++..+.+.|+++.|..+++..++.....+.+.. +
T Consensus 28 ~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 28 IDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 57889999998875 2335567888889888999999999999998876432221111 2
Q ss_pred hcC------CCCCCcchHHHHHHHHHh---------cCCchHHHHHHHHhhHcc------HHHHhh--------------
Q 035847 62 FEK------MPERNVFSWTSMMGMYNV---------LGYYEEIVNLFYLLIDEG------VYKACS-------------- 106 (523)
Q Consensus 62 f~~------~~~~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g------ll~~~~-------------- 106 (523)
|+. ...++...|...+....+ .|++++|..+|++..... +...+.
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 221 111345667776665544 678888888888866532 111111
Q ss_pred ---ccCChHHHHHHHHHHHHh--cC-------CCC--------ceeHhHHHHHHHhc----CCH----HHHHHHhhhc--
Q 035847 107 ---ELKDHRVGKDVYDYMISI--KF-------EGN--------ACVKRPVLDMFIKC----GRM----EMASGEFEEK-- 156 (523)
Q Consensus 107 ---~~~~~~~a~~~~~~m~~~--g~-------~p~--------~~~~~~li~~~~~~----g~~----~~A~~~f~~~-- 156 (523)
..+++..|..++...... ++ .|+ ...|...+...... ++. +.|..+|+++
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 223445555555542211 12 232 13444444333221 222 3566677663
Q ss_pred --------------ccc-------ccCchh-------hHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 157 --------------DFS-------NLSLLK-------HGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 157 --------------~~~-------~~~~~~-------~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
... ..|+++ .+..++...++. +.| +...|..+...+.+.|++++|..+|
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 111 245655 677777777653 234 5778889999999999999999999
Q ss_pred hcCCC--CCh--hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHH-hhccCChhHH
Q 035847 208 SKIKQ--KHL--VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAA-CAQVKGFKLG 281 (523)
Q Consensus 208 ~~m~~--~~~--~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a 281 (523)
+...+ |+. ..|..+.. .+.+.|++++|.++|++..+. .|+ ...|...... +...|+.+.|
T Consensus 345 ~~al~~~p~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMK------------FARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhCccccCchHHHHHHHH------------HHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 87643 432 47888887 777888899999999988764 232 2333322212 2357889999
Q ss_pred HHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC--HhHHHHHHH
Q 035847 282 KEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA--MEQYCCMVD 359 (523)
Q Consensus 282 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~--~~ty~~li~ 359 (523)
..+++..++.. +.+...|..++..+.+.|+. ++|..+|++........|+ ...|...+.
T Consensus 411 ~~~~e~al~~~-----------------p~~~~~~~~~~~~~~~~g~~--~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 411 FKIFELGLKKY-----------------GDIPEYVLAYIDYLSHLNED--NNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHH-----------------TTCHHHHHHHHHHHTTTTCH--HHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHC-----------------CCCHHHHHHHHHHHHhCCCH--hhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 99998887742 12456788888888899999 9999999988775223443 447777777
Q ss_pred HHHhhCCHHHHHHHHHhC
Q 035847 360 LLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 360 ~~~~~g~~~~A~~~~~~m 377 (523)
.....|+.+.+..+.+++
T Consensus 472 ~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 777888888888777664
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.14 E-value=9.1e-10 Score=100.63 Aligned_cols=195 Identities=12% Similarity=-0.007 Sum_probs=149.7
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 147 (523)
++...|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..|.+.|+++
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~ 56 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--------------------------PQDPEALYWLARTQLKLGLVN 56 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------------------SSCHHHHHHHHHHHHHTTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHH
Confidence 467788888888999999999999998877643 446778889999999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhc-----------CChHHHHHHHhcCCC--C
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKC-----------RYLKVAHCKFSKIKQ--K 213 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~-----------g~~~~A~~vf~~m~~--~ 213 (523)
+|...|++ .-. ..| +...+..+-..|.+. |+.++|...|+...+ |
T Consensus 57 ~A~~~~~~-------------------al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 57 PALENGKT-------------------LVA--RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp HHHHHHHH-------------------HHH--HCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHH-------------------HHH--hCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 99999998 222 234 567888888999999 999999999988753 4
Q ss_pred -ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 214 -HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 214 -~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
+...|..+-. .|.+.|++++|+..|++..+.. .+...+..+-.++...|+.++|...++...+..
T Consensus 116 ~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 116 RYAPLHLQRGL------------VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp TCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHH------------HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567888877 8889999999999999999877 788889999999999999999999999998742
Q ss_pred CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 293 IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 293 ~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
+.+...+..+...+...|+. ++|...|++..
T Consensus 182 -----------------P~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 -----------------PKDLDLRVRYASALLLKGKA--EEAARAAALEH 212 (217)
T ss_dssp -----------------TTCHHHHHHHHHHHTC-----------------
T ss_pred -----------------CCChHHHHHHHHHHHHccCH--HHHHHHHHHHh
Confidence 22456788888999999999 99999887654
No 43
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.14 E-value=8.4e-08 Score=98.99 Aligned_cols=335 Identities=11% Similarity=0.011 Sum_probs=235.7
Q ss_pred CcchHHHHHHhccC----CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh----cCCchHHHHH
Q 035847 21 CTVTYALIFQRCPK----LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV----LGYYEEIVNL 92 (523)
Q Consensus 21 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l 92 (523)
|..++..+-..+.. .++++.|...+....+.| +...+..|-..|.. .+++++|++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----------------YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34444444444444 678888888888777654 45677777777777 7888899999
Q ss_pred HHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhhhcc
Q 035847 93 FYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFEEKD 157 (523)
Q Consensus 93 ~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~~~~ 157 (523)
|++..+.| +-..+.. .++.++|.+.+....+.| +...+..|-..|.. .++.++|...|++
T Consensus 102 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-- 176 (490)
T 2xm6_A 102 YKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK-- 176 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH--
Confidence 88877766 3334444 678888888888887765 45667777777777 7788888888887
Q ss_pred ccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHhhhhcCCcc
Q 035847 158 FSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~~t~~~li~~~~~~g~~~ 232 (523)
..+. | +...+..|-..|.+ .++.++|...|+...+ .+..++..+-.
T Consensus 177 ----------------a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~--------- 227 (490)
T 2xm6_A 177 ----------------AAEQ-G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLAD--------- 227 (490)
T ss_dssp ----------------HHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH---------
T ss_pred ----------------HHHC-C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH---------
Confidence 1222 3 56778888888988 8999999999987653 46667777777
Q ss_pred ccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhcCCchHHHHhHHH
Q 035847 233 EITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHIQLSTGVGIALI 304 (523)
Q Consensus 233 ~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~~~~~~~~~~li 304 (523)
.|.. .+++++|.++|+...+.| +...+..+-..+.. .++.++|.+.++...+.|
T Consensus 228 ---~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~------------ 289 (490)
T 2xm6_A 228 ---MYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG------------ 289 (490)
T ss_dssp ---HHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT------------
T ss_pred ---HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC------------
Confidence 5554 789999999999988765 34445555555555 789999999999998765
Q ss_pred hhhCCCCCcchHHHHHHHHHhc-----CCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC---CHHHHHHHHHh
Q 035847 305 SIQGLGTGSFVWNSLIDMYGRC-----GAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG---QFDDTLNFMKK 376 (523)
Q Consensus 305 ~~y~~~p~~~~~n~li~~~~~~-----g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~~~~~ 376 (523)
+...+..+-..|... ++. ++|..+|+...+. | +...+..|-..|.+.| +.++|.+++++
T Consensus 290 -------~~~a~~~Lg~~y~~~~~g~~~~~--~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 290 -------NSDGQYYLAHLYDKGAEGVAKNR--EQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp -------CHHHHHHHHHHHHHCBTTBCCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHcCCCCCcCCH--HHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 334556666677766 788 9999999998875 4 4566777777777766 78999999887
Q ss_pred CCCCCCCC--------------CCCCHHHHHHHHHHHHhhCCCCCccee----EEEecCCCCchHHHHHHHHHHHHHHHH
Q 035847 377 MPFEPSSA--------------EPCNPDIAEHAARHLFELEPLSSGKVH----SFIAGDTSHSLVHKISEKLMRLYSEIK 438 (523)
Q Consensus 377 m~~~p~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~~m~ 438 (523)
.--..+.. ..++.+.|...+++..+..+ +..++ .+..|....+..+++. +.+++-.
T Consensus 357 a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~--~~a~~~Lg~~y~~g~g~~~d~~~A~----~~~~~A~ 430 (490)
T 2xm6_A 357 AAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL--SAAQVQLGEIYYYGLGVERDYVQAW----AWFDTAS 430 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHH----HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCCCCCHHHHH----HHHHHHH
Confidence 42112221 36899999988888877542 22111 1123444567778875 4455555
Q ss_pred HcCC
Q 035847 439 KIGY 442 (523)
Q Consensus 439 ~~g~ 442 (523)
+.|.
T Consensus 431 ~~~~ 434 (490)
T 2xm6_A 431 TNDM 434 (490)
T ss_dssp HHHC
T ss_pred HCCC
Confidence 5553
No 44
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.13 E-value=2.8e-09 Score=109.16 Aligned_cols=345 Identities=8% Similarity=-0.025 Sum_probs=210.8
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhC--CCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCG--VELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
......||.|-..+...|+.++|.+.+.+..+.- ..+ +.......++|+.+-..|...|++++|+..|++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka 120 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3345678888888889999999999998775420 000 0001234678999999999999999999999876
Q ss_pred hHcc-----------------HHHHhh--ccCChHHHHHHHHHHHHhcCCCC-ceeHhHHHHH---HHhcCCHHHHHHHh
Q 035847 97 IDEG-----------------VYKACS--ELKDHRVGKDVYDYMISIKFEGN-ACVKRPVLDM---FIKCGRMEMASGEF 153 (523)
Q Consensus 97 ~~~g-----------------ll~~~~--~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~A~~~f 153 (523)
.... .-.++. ..++.++|.+.|++.++. .|+ ...+..+... +...++.++|+..|
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5421 111122 235678899999888876 354 4444444444 33456667777777
Q ss_pred hhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCC---CCChhhHHHHHHhhh
Q 035847 154 EEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIK---QKHLVSWNAMLAGYA 226 (523)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~---~~~~~t~~~li~~~~ 226 (523)
++ .++. -+.+..++..+...+.+ .|+.++|.+.+++.. ..+...|+.+-.
T Consensus 199 ~~------------------al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~--- 255 (472)
T 4g1t_A 199 RQ------------------AIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK--- 255 (472)
T ss_dssp HH------------------HHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHH---
T ss_pred HH------------------Hhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHH---
Confidence 66 1222 12234555555544544 456788888887653 235567888888
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhcc-------------------CChhHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQV-------------------KGFKLGKEIHG 286 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~-------------------g~~~~a~~i~~ 286 (523)
.|.+.|++++|++.|++..+. .|+ ..++..+-..+... +..+.|...+.
T Consensus 256 ---------~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 324 (472)
T 4g1t_A 256 ---------FYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLK 324 (472)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888999999999999998774 454 34444443333211 11223333333
Q ss_pred HHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCH--hHHHHHHH-HHHh
Q 035847 287 YVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAM--EQYCCMVD-LLAR 363 (523)
Q Consensus 287 ~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~--~ty~~li~-~~~~ 363 (523)
...+.. +.+..+|..+-..|...|+. ++|...|+...+. ...|.. ..+..+.. .+..
T Consensus 325 ~a~~~~-----------------~~~~~~~~~lg~~~~~~~~~--~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 325 KADEAN-----------------DNLFRVCSILASLHALADQY--EEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp HHHHHC-----------------TTTCCCHHHHHHHHHHTTCH--HHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcC-----------------CchhhhhhhHHHHHHHhccH--HHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHH
Confidence 333211 34667899999999999999 9999999988764 333322 12222222 3346
Q ss_pred hCCHHHHHHHHHh-CCCCCCCC-CCCCHHHHHHHHHHHHhhCCCCCcceeEEEecCCCCchHHHH
Q 035847 364 AGQFDDTLNFMKK-MPFEPSSA-EPCNPDIAEHAARHLFELEPLSSGKVHSFIAGDTSHSLVHKI 426 (523)
Q Consensus 364 ~g~~~~A~~~~~~-m~~~p~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (523)
.|+.++|...+++ +.+.|+.. ..+....++..+++.++.+|.++..++.+-.-+...|+.+++
T Consensus 385 ~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 385 MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp SSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8999999999877 35666654 333345556677778888888876554433223333333333
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.13 E-value=1.3e-09 Score=100.51 Aligned_cols=199 Identities=10% Similarity=0.052 Sum_probs=137.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
...+|..+-..+...|+++.|...++.+.+.. ..+..+|..+...|.+.|++++|++.|++.....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------------KEDAIPYINFANLLSSVNELERALAFYDKALELD 87 (243)
T ss_dssp --------------------CCTTHHHHHTTC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44556666666677777777777777776543 2356677777777777777777777777765532
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+...|.+.|++++|...|++ ... -.
T Consensus 88 --------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------------~~~-~~ 121 (243)
T 2q7f_A 88 --------------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEK-------------------ALR-AG 121 (243)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HT
T ss_pred --------------------------CcchHHHHHHHHHHHHhccHHHHHHHHHH-------------------HHH-hC
Confidence 34667788888899999999999999988 322 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
..+..++..+...|.+.|+.++|...++...+ .+...|..+.. .+.+.|++++|++.|++..+..
T Consensus 122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGM------------CLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC
Confidence 34567788888999999999999999887642 45667888888 8888999999999999887753
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 258 MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
..+..++..+..++...|+.++|.+.++.+.+..
T Consensus 190 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 190 -PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp -TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred -cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 2356778888888999999999999999888753
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.12 E-value=1.1e-09 Score=101.20 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=133.8
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
.....+|..+-..+.+.|++++|+..|++..... +.+..++..+...|.+.|++
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------------------~~~~~~~~~la~~~~~~~~~ 73 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--------------------------KEDAIPYINFANLLSSVNEL 73 (243)
T ss_dssp ----------------------CCTTHHHHHTTC--------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcCCH
Confidence 3456677778888888888888888888876543 44677888888899999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
++|...|++ ... -...+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 74 ~~A~~~~~~-------------------~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 133 (243)
T 2q7f_A 74 ERALAFYDK-------------------ALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133 (243)
T ss_dssp HHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHH-------------------HHH-cCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999988 222 1233567888888888889999999888887642 45667777777
Q ss_pred hhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHH
Q 035847 224 GYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303 (523)
Q Consensus 224 ~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 303 (523)
.+.+.|++++|+..|++..+.. +.+...+..+...+...|+.++|...+..+.+..
T Consensus 134 ------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------- 189 (243)
T 2q7f_A 134 ------------VLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD----------- 189 (243)
T ss_dssp ------------HHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-----------
T ss_pred ------------HHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 7788888999998888887653 2356677777778888888888888888777642
Q ss_pred HhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 304 ISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 304 i~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.+..+|..+...|...|+. ++|..+|+...+.
T Consensus 190 ------~~~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 190 ------PGHADAFYNAGVTYAYKENR--EKALEMLDKAIDI 222 (243)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCT--THHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHccCH--HHHHHHHHHHHcc
Confidence 12345677788888888888 8888888887754
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.08 E-value=4.1e-09 Score=96.24 Aligned_cols=194 Identities=13% Similarity=0.039 Sum_probs=149.5
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
+++...+..+-..+.+.|++++|...|++ .-. --+.+...+..+-..|.+.|+.++|...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 61 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFER-------------------ALK-ENPQDPEALYWLARTQLKLGLVNPALEN 61 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT-TSSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46777888899999999999999999998 332 1233577889999999999999999999
Q ss_pred HhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhcc-----------CCchHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 035847 207 FSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQY-----------GDGETALEFFSRMIQTDMQP-NTISLSGVLAA 271 (523)
Q Consensus 207 f~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~-----------g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a 271 (523)
|++.. .| +...|..+-. .+.+. |++++|+..|++..+. .| +...+..+-.+
T Consensus 62 ~~~al~~~P~~~~a~~~lg~------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 62 GKTLVARTPRYLGGYMVLSE------------AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHCTTCHHHHHHHHH------------HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHH------------HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 99865 34 4567888888 77788 9999999999999874 45 46678888888
Q ss_pred hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-
Q 035847 272 CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA- 350 (523)
Q Consensus 272 ~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~- 350 (523)
+...|+.++|...++..++.. . +...|..+-..|...|+. ++|...|+...+. .|+
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~--~----------------~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~---~P~~ 184 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE--D----------------TPEIRSALAELYLSMGRL--DEALAQYAKALEQ---APKD 184 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--C----------------CHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH---STTC
T ss_pred HHHcCChHHHHHHHHHHHhcc--c----------------chHHHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCC
Confidence 999999999999999998865 2 446788899999999999 9999999999875 454
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 351 MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 351 ~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...+..+...+.+.|++++|...+++.
T Consensus 185 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 185 LDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 678888999999999999999998875
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.04 E-value=2.7e-08 Score=93.53 Aligned_cols=222 Identities=11% Similarity=0.008 Sum_probs=172.7
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--- 100 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 100 (523)
.+...-..+...|+++.|...+....+.. ..+..+|..+...|.+.|++++|+..|++....+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 70 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT 70 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch
Confidence 34455566778999999999999998764 2356689999999999999999999999887633
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
+...+...|+++.|.+.+....+.. +.+..++..+-..|.+.|++++|...|++
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---------------- 133 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEK---------------- 133 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGG----------------
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence 5666778999999999999999874 44667899999999999999999999999
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCC---chH
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGD---GET 245 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~---~~~ 245 (523)
... -...+..++..+-..+...+++++|...|+...+ | +...|..+.. .+...|+ +++
T Consensus 134 ---al~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~------------~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 134 ---QIR-PTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR------------ANAAQDPDTKQGL 197 (272)
T ss_dssp ---GCC-SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHHHSTTCSSCT
T ss_pred ---Hhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH------------HHHHcCcchhhHH
Confidence 332 1223456666666233445699999999998753 4 3566777767 6666677 888
Q ss_pred HHHHHHHHHhc-CCCCC------HHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 246 ALEFFSRMIQT-DMQPN------TISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 246 A~~lf~~M~~~-g~~p~------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
|...|++..+. .-.|+ ..+|..+-..+...|+.++|.+.++...+..
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999888763 22243 2567778888899999999999999998753
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.02 E-value=4.3e-08 Score=108.54 Aligned_cols=256 Identities=11% Similarity=0.048 Sum_probs=166.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
+..+|..+-.++.+.|++++|++.|.+-.... +..+|.+.|+++++.+.+....+.. ++..+.+.+.-.|+|.+
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 1181 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc
Confidence 46789999999999999999999997653222 8999999999999999999877753 66666667999999999
Q ss_pred CHHHHHHHhhhc----------cccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 035847 145 RMEMASGEFEEK----------DFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKH 214 (523)
Q Consensus 145 ~~~~A~~~f~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~ 214 (523)
++++...+.+.. .|-+.+.++.|..++..+ ..|..+...|.+.|++++|.+.++.. .+
T Consensus 1182 rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n 1249 (1630)
T 1xi4_A 1182 RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NS 1249 (1630)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CC
Confidence 998654443321 333344444444444432 24555555555556666655555543 33
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~ 294 (523)
..+|..+-. +|...|++..|...... +..+...+..++..|.+.|.+++|..+++..+.. .
T Consensus 1250 ~~aWkev~~------------acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--e 1310 (1630)
T 1xi4_A 1250 TRTWKEVCF------------ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL--E 1310 (1630)
T ss_pred HHHHHHHHH------------HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--C
Confidence 455555555 55555555555544332 3334455556666777777777777776554421 1
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC--CCchHHHHHHHHHhHHhcCCcc------CHhHHHHHHHHHHhhCC
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCG--AIQKNEGWRYFEMMKKEYNMEP------AMEQYCCMVDLLARAGQ 366 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g--~~~~~~a~~~~~~m~~~~g~~p------~~~ty~~li~~~~~~g~ 366 (523)
......|+-|-..|++.. +. .++.++|. ++-++.| +...|.-++-.|.+.|+
T Consensus 1311 ---------------raH~gmftELaiLyaKy~pekl--mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1311 ---------------RAHMGMFTELAILYSKFKPQKM--REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred ---------------hhHhHHHHHHHHHHHhCCHHHH--HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 224456777777777653 33 44444444 3324444 36779999999999999
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
++.|...+-+-
T Consensus 1371 ~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1371 YDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHhc
Confidence 99998776554
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=5.2e-09 Score=105.00 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=193.2
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc----chHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV----FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 27 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
.+-..+...|+++.|...++...+... .+. .+|..+-..|...|++++|+..|++....
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 115 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT--------------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL--- 115 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc--------------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 344556677888888888888877642 122 46777777888888888888888775431
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-C
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-E 181 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 181 (523)
+...++ -.....++..+-..|...|++++|...|++ +.++... . +- .
T Consensus 116 --~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----------al~~~~~---~-~~~~ 163 (411)
T 4a1s_A 116 --AKSMND---------------RLGEAKSSGNLGNTLKVMGRFDEAAICCER-----------HLTLARQ---L-GDRL 163 (411)
T ss_dssp --HHHTTC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHH---H-TCHH
T ss_pred --HHHccC---------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHH---h-hchH
Confidence 011111 012345677888999999999999999998 1111111 1 21 2
Q ss_pred CchhHHHHHHHHHHhcCC-----------------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccc
Q 035847 182 SDLLVNNSLMDFYAKCRY-----------------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~-----------------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~ 235 (523)
....++..+-..|...|+ +++|...+++..+ ++ ..+|..+-.
T Consensus 164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------ 231 (411)
T 4a1s_A 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGN------------ 231 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------
Confidence 235678889999999999 9999888876432 11 236667777
Q ss_pred hhhccCCchHHHHHHHHHHhcCC-CCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDM-QPN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 310 (523)
.|...|++++|++.|++..+... .++ ..++..+...+...|++++|.+.++...+..-..... .
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~ 300 (411)
T 4a1s_A 232 TYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER-----------E 300 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH-----------H
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH-----------H
Confidence 88899999999999998865311 112 2377788889999999999999998887632110000 0
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....+|..+...|...|+. ++|..+|++..+...-.++ ..+|..+...|.+.|++++|.+.+++.
T Consensus 301 ~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEF--NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1235788899999999999 9999999987654111111 457888899999999999999998874
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.01 E-value=9.3e-09 Score=99.26 Aligned_cols=277 Identities=13% Similarity=0.058 Sum_probs=195.4
Q ss_pred HHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC----cchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 27 LIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN----VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 27 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..-..+...|+++.|...++...+... .+ ...|..+...|...|++++|++.|++.....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 73 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT--------------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-- 73 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC--------------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc--------------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--
Confidence 344556688999999999999988642 12 4678888889999999999999998755421
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-C
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-E 181 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~ 181 (523)
...++. .....++..+-..|...|++++|...|+++ .++.. +. +- .
T Consensus 74 ---~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~-~~~~ 120 (338)
T 3ro2_A 74 ---RTIGDQ---------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRH-----------LDISR---EL-NDKV 120 (338)
T ss_dssp ---HHHTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HT-TCHH
T ss_pred ---hccccc---------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHH-----------HHHHH---Hh-cCch
Confidence 111110 112456778889999999999999999881 11111 11 11 1
Q ss_pred CchhHHHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCcc
Q 035847 182 SDLLVNNSLMDFYAKCRY--------------------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~--------------------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~ 232 (523)
....++..+...|...|+ +++|...++...+ ++ ..+|..+..
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~--------- 191 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGN--------- 191 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------
Confidence 124578888899999999 8999888876532 12 235666767
Q ss_pred ccchhhccCCchHHHHHHHHHHhc----CCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh
Q 035847 233 EITGFTQYGDGETALEFFSRMIQT----DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ 307 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 307 (523)
.|...|++++|.+.|++..+. +..+ ...++..+...+...|+.++|.+.+....+..-..+..
T Consensus 192 ---~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 259 (338)
T 3ro2_A 192 ---THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR--------- 259 (338)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------
T ss_pred ---HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch---------
Confidence 888999999999999987652 1111 13477788888999999999999998887532110000
Q ss_pred CCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 308 GLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 308 ~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.....++..+...|...|+. ++|..+|+...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 260 --~~~~~~~~~la~~~~~~g~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 260 --AVEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp --HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00135678888999999999 9999999887653111111 457888999999999999999998874
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.00 E-value=8.8e-08 Score=92.37 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhcCCCCceeHhHHHHHHHh-------cCCH-------HHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 113 VGKDVYDYMISIKFEGNACVKRPVLDMFIK-------CGRM-------EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.|..+|++.++.. +.+...|..+...+.. .|++ ++|..+|+++ ++
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rA------------------l~-- 92 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA------------------IS-- 92 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH------------------HT--
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHH------------------HH--
Confidence 3444555554432 4567788888877763 5886 8899998881 32
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hh-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH
Q 035847 179 DLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LV-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 179 g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M 253 (523)
.+.| +...|..+...+.+.|++++|..+|++..+ |+ .. .|..+.. .+.+.|++++|..+|++.
T Consensus 93 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 93 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMK------------FARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHH------------HHHHHHCHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHH------------HHHHhcCHHHHHHHHHHH
Confidence 1345 456899999999999999999999998754 43 33 7999988 888999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHh-hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchH
Q 035847 254 IQTDMQPNTISLSGVLAAC-AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKN 332 (523)
Q Consensus 254 ~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~ 332 (523)
.+... ++...|....... ...|+.+.|.++++..++.. +.+...|..++..+.+.|+. +
T Consensus 161 ~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~~~~~~~~~g~~--~ 220 (308)
T 2ond_A 161 REDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----------------GDIPEYVLAYIDYLSHLNED--N 220 (308)
T ss_dssp HTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHTTCCH--H
T ss_pred HhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHCCCH--H
Confidence 87532 3444554433332 23699999999999988742 12457889999999999999 9
Q ss_pred HHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 333 EGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 333 ~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+|..+|++......+.|+ ...|..++..+.+.|+.++|..++++.
T Consensus 221 ~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999875224663 578888999999999999999888774
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.00 E-value=6.7e-09 Score=103.58 Aligned_cols=271 Identities=12% Similarity=0.011 Sum_probs=196.1
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------------HHHHhhccCChHHHHHHHHHHHHhc----CCC-C
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------------VYKACSELKDHRVGKDVYDYMISIK----FEG-N 129 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------ll~~~~~~~~~~~a~~~~~~m~~~g----~~p-~ 129 (523)
.....|...-..+.+.|++++|+..|++....+ +...+...|+++.|...+....+.. -.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 455666777788889999999999999887654 5566778899999999998876542 112 2
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCC----------
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY---------- 199 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~---------- 199 (523)
..++..+-..|...|++++|...|+++ ..+.. +.........++..+-..|...|+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRH-----------LDISR---ELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHH---hcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 457888889999999999999999881 11111 110111125578888899999999
Q ss_pred ----------hHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC-CC
Q 035847 200 ----------LKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD-MQ 259 (523)
Q Consensus 200 ----------~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g-~~ 259 (523)
+++|...++...+ ++ ..+|+.+-. .|...|++++|+..|++..+.. -.
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN------------THYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH------------HHHHccCHHHHHHHHHHHHHHHHhc
Confidence 8888888776431 12 235777777 8889999999999999886521 11
Q ss_pred CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHH
Q 035847 260 PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGW 335 (523)
Q Consensus 260 p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~ 335 (523)
++ ..++..+-..+...|++++|...+....+..-..... .....++..+-..|...|+. ++|.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~ 287 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----------AVEAQSCYSLGNTYTLLQDY--EKAI 287 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc-----------hHHHHHHHHHHHHHHHhCcH--HHHH
Confidence 22 2477788888999999999999998887532110000 00135788899999999999 9999
Q ss_pred HHHHHhHHhcCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 336 RYFEMMKKEYNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 336 ~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+|+...+...-.++ ..++..+...|.+.|++++|.+.+++.
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887654111122 567888889999999999999998874
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.00 E-value=2.4e-08 Score=99.27 Aligned_cols=227 Identities=9% Similarity=0.019 Sum_probs=175.9
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC-HHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR-MEM 148 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~ 148 (523)
...|+.+-..+.+.|++++|+..|++..... +-+..+|+.+-..|.+.|+ +++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------------------P~~~~a~~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--------------------------AANYTVWHFRRVLLKSLQKDLHE 150 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------------------ccCHHHHHHHHHHHHHcccCHHH
Confidence 3567777778888888888888888776643 3457788999999999997 999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~ 225 (523)
|+..|+++ ++. -.-+..+|+.+-..|.+.|++++|...|+...+ .+...|+.+-.
T Consensus 151 Al~~~~~a------------------l~l--~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~-- 208 (382)
T 2h6f_A 151 EMNYITAI------------------IEE--QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW-- 208 (382)
T ss_dssp HHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH--
T ss_pred HHHHHHHH------------------HHH--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHH--
Confidence 99999991 222 123577899999999999999999999998753 46778998888
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cCChhHH-----HHHHHHHHHhcCCchHHH
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ-VKGFKLG-----KEIHGYVLRHHIQLSTGV 299 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~-~g~~~~a-----~~i~~~~~~~g~~~~~~~ 299 (523)
.+.+.|++++|+..|+++.+... -+...|+.+-.++.+ .|..++| .+.+...++..
T Consensus 209 ----------~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~------- 270 (382)
T 2h6f_A 209 ----------VIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV------- 270 (382)
T ss_dssp ----------HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-------
T ss_pred ----------HHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-------
Confidence 88899999999999999998542 256788888888888 5655777 36666666532
Q ss_pred HhHHHhhhCCCCCcchHHHHHHHHHhcC--CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC---------CHH
Q 035847 300 GIALISIQGLGTGSFVWNSLIDMYGRCG--AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG---------QFD 368 (523)
Q Consensus 300 ~~~li~~y~~~p~~~~~n~li~~~~~~g--~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g---------~~~ 368 (523)
+-+...|+.+-..|...| +. ++|.+.+..+ + .-..+...+..+.+.|.+.| .++
T Consensus 271 ----------P~~~~a~~~l~~ll~~~g~~~~--~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~ 335 (382)
T 2h6f_A 271 ----------PHNESAWNYLKGILQDRGLSKY--PNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 335 (382)
T ss_dssp ----------TTCHHHHHHHHHHHTTTCGGGC--HHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHccCccch--HHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 225568999999999988 58 9999999887 3 23445678889999998874 257
Q ss_pred HHHHHHHhC
Q 035847 369 DTLNFMKKM 377 (523)
Q Consensus 369 ~A~~~~~~m 377 (523)
+|.+++++.
T Consensus 336 ~A~~~~~~l 344 (382)
T 2h6f_A 336 KALELCEIL 344 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888776
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=9.9e-08 Score=90.00 Aligned_cols=183 Identities=10% Similarity=-0.015 Sum_probs=101.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
+..++..+-..|.+.|++++|+..|++..+.+ +-..+.. .++.++|.+.+.+..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 55677777778888888888888888776654 3333444 555666666666555543 444555555
Q ss_pred HHHHh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhc
Q 035847 138 DMFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSK 209 (523)
Q Consensus 138 ~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~ 209 (523)
..|.. .+++++|...|+++ .+. + +...+..+-..|.+ .++.++|...|+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a------------------~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKA------------------CDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHH------------------HHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHH------------------HHc-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 55555 56666666665551 111 1 34455555555555 5566666555554
Q ss_pred CCC-CChhhHHHHHHhhhhcCCccccchhhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhH
Q 035847 210 IKQ-KHLVSWNAMLAGYALGGFREEITGFTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKL 280 (523)
Q Consensus 210 m~~-~~~~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~ 280 (523)
..+ .+..++..+-. .|.+ .+++++|+..|++..+.+ +...+..+-..+.. .++.++
T Consensus 140 a~~~~~~~a~~~lg~------------~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 140 ACDLNDGDGCTILGS------------LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHTTCHHHHHHHHH------------HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHhcCcHHHHHHHHH------------HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 332 23334444444 3333 555566666655555443 23344444444444 555555
Q ss_pred HHHHHHHHHHh
Q 035847 281 GKEIHGYVLRH 291 (523)
Q Consensus 281 a~~i~~~~~~~ 291 (523)
|.+.++...+.
T Consensus 205 A~~~~~~a~~~ 215 (273)
T 1ouv_A 205 ALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 55555555543
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.97 E-value=1.2e-07 Score=89.29 Aligned_cols=217 Identities=10% Similarity=-0.042 Sum_probs=177.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh----cCCchHHHHHHHHh
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV----LGYYEEIVNLFYLL 96 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 96 (523)
+..++..+-..+...+++++|...+....+.+ +..+|..+-..|.+ .+++++|+..|++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 44566667777778899999999999988743 45678888888999 99999999999998
Q ss_pred hHcc-------HHHHhhc----cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhhhcccccc
Q 035847 97 IDEG-------VYKACSE----LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFEEKDFSNL 161 (523)
Q Consensus 97 ~~~g-------ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~~~ 161 (523)
.+.+ +-..+.. .++.++|.+.+....+.+ +...+..+-..|.+ .|++++|...|+++
T Consensus 69 ~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a----- 140 (273)
T 1ouv_A 69 CDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA----- 140 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH-----
T ss_pred HHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH-----
Confidence 7776 5555666 899999999999999875 67788889999999 99999999999981
Q ss_pred CchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhhHHHHHHhhhhcCCccccch
Q 035847 162 SLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQ-KHLVSWNAMLAGYALGGFREEITG 236 (523)
Q Consensus 162 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~-~~~~t~~~li~~~~~~g~~~~i~~ 236 (523)
.+. + +...+..+-..|.+ .++.++|...|+...+ .+..++..+-. .
T Consensus 141 -------------~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~------------~ 191 (273)
T 1ouv_A 141 -------------CDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGN------------M 191 (273)
T ss_dssp -------------HHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH------------H
T ss_pred -------------Hhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH------------H
Confidence 222 3 45677788888888 8999999999987654 45567777777 7
Q ss_pred hhc----cCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc----cCChhHHHHHHHHHHHhcC
Q 035847 237 FTQ----YGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQ----VKGFKLGKEIHGYVLRHHI 293 (523)
Q Consensus 237 ~~~----~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~g~ 293 (523)
|.+ .+++++|++.|++..+.+. ...+..+-..+.+ .++.++|.+.++...+.|.
T Consensus 192 ~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 192 YHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 777 8999999999999988653 5566667777777 8999999999999988763
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.95 E-value=5.4e-08 Score=96.96 Aligned_cols=297 Identities=12% Similarity=0.065 Sum_probs=210.9
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC--cchHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN--VFSWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
+....+...-..+...|+++.|...++...+.... .+. ..+|..+-..|...|++++|+..|++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE------------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34445556667778899999999999999887421 111 3578889999999999999999998765
Q ss_pred Hcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----ceeHhHHHHHHHhcCC------------
Q 035847 98 DEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN----ACVKRPVLDMFIKCGR------------ 145 (523)
Q Consensus 98 ~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~------------ 145 (523)
... +...+...|+++.|...+....+..-. ++ ..++..+-..|...|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 75 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 431 556677889999999999888764211 12 4478888899999999
Q ss_pred --------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC----
Q 035847 146 --------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---- 212 (523)
Q Consensus 146 --------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---- 212 (523)
++.|...|++ +..+.. +. +..| ...++..+...|...|++++|...|++..+
T Consensus 155 ~~~~a~~~~~~A~~~~~~-----------al~~~~---~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEE-----------NLSLVT---AL-GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp CCHHHHHHHHHHHHHHHH-----------HHHHHH---HT-TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH-----------HHHHHH---hc-cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 8888888877 111111 11 2222 345788899999999999999999987642
Q ss_pred -CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCC-HHHHHHHHHHhhccCChhHHH
Q 035847 213 -KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPN-TISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 -~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~ 282 (523)
++ ..+|..+.. .|...|++++|...|++.... +-.+. ..++..+-..+...|++++|.
T Consensus 220 ~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 220 FGDKAAERRAYSNLGN------------AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp TTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcHHHHHHHHHHHH------------HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 22 236777777 888999999999999987652 11111 467778888899999999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh---cCCccC-HhHHHHHH
Q 035847 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE---YNMEPA-MEQYCCMV 358 (523)
Q Consensus 283 ~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~---~g~~p~-~~ty~~li 358 (523)
+.+....+..-..+.. .....+|..+-..|...|+. ++|..+|++..+. .+-.|. ..++..+.
T Consensus 288 ~~~~~a~~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 354 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDR-----------IGEGRACWSLGNAYTALGNH--DQAMHFAEKHLEISREVGDKSGELTARLNLS 354 (406)
T ss_dssp HHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-----------HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 9998887632111000 00135778889999999999 9999999886543 122222 45666677
Q ss_pred HHHHhhCCHH
Q 035847 359 DLLARAGQFD 368 (523)
Q Consensus 359 ~~~~~~g~~~ 368 (523)
..+...|+..
T Consensus 355 ~~~~~~g~~~ 364 (406)
T 3sf4_A 355 DLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHhhHhH
Confidence 7777766653
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=9.7e-08 Score=92.07 Aligned_cols=223 Identities=10% Similarity=0.059 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh-------cCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 39 ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV-------LGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 39 ~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~-------~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+.|..++++.++.. ..+...|..+...+.+ .|+++.+ .+..
T Consensus 33 ~~a~~~~~~al~~~--------------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~------------------~~~~ 80 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--------------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA------------------KLFS 80 (308)
T ss_dssp HHHHHHHHHHHHHH--------------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHH------------------HHHH
T ss_pred HHHHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHhchhhhhccchhhc------------------ccch
Confidence 56777888887653 2467788888877764 3554100 0011
Q ss_pred HHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hh-HHH
Q 035847 112 RVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LL-VNN 188 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~-~~~ 188 (523)
++|..++++.++. +.| +...|..+...+.+.|++++|..+|++ .-. +.|+ .. +|.
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------al~--~~p~~~~~~~~ 138 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNR-------------------LLA--IEDIDPTLVYI 138 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHT--SSSSCTHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHH-------------------HHh--ccccCccHHHH
Confidence 3444444444432 235 455899999999999999999999999 222 3443 33 899
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccch-hhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITG-FTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~-~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
.+...+.+.|++++|..+|++..+ | +...|..... . +...|++++|..+|++..+.. +-+...
T Consensus 139 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~------------~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (308)
T 2ond_A 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL------------MEYYCSKDKSVAFKIFELGLKKY-GDIPEY 205 (308)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH------------HHHHTSCCHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 999999999999999999998654 3 3334443322 2 223699999999999988742 225678
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhc-CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHH-IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g-~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
|..++..+.+.|+.+.|..+++..++.. ++|+. ....|..++..+.+.|+. ++|..+++++.+
T Consensus 206 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~--------------~~~l~~~~~~~~~~~g~~--~~a~~~~~~a~~ 269 (308)
T 2ond_A 206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK--------------SGEIWARFLAFESNIGDL--ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG--------------CHHHHHHHHHHHHHHSCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH--------------HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Confidence 8888899999999999999999998853 34422 346789999999999999 999999999987
Q ss_pred h
Q 035847 344 E 344 (523)
Q Consensus 344 ~ 344 (523)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 6
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.92 E-value=8.6e-09 Score=98.72 Aligned_cols=254 Identities=13% Similarity=0.110 Sum_probs=164.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|..+...|...|++++|+.+|++..+. ..............++..+...|...|++++
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 87 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED------------------LEKTSGHDHPDVATMLNILALVYRDQNKYKD 87 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHH
Confidence 3577888999999999999999999886652 1111100112235578888999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----Chhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------K----HLVS 217 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------~----~~~t 217 (523)
|...|++ +..+....... .......++..+...|...|++++|...|++..+ + ...+
T Consensus 88 A~~~~~~-----------al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 88 AANLLND-----------ALAIREKTLGK-DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHH-----------HHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHH-----------HHHHHHHHhCC-CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999998 11221111111 1233467889999999999999999999987642 1 2245
Q ss_pred HHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc------CCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 218 WNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT------DMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 218 ~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
|+.+.. .|.+.|++++|++.|++.... +-.|+ ..++..+...+...|+.++|.+.+..+.+
T Consensus 156 ~~~la~------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 156 LNNLAL------------LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777 888999999999999998774 22343 45678888899999999999999999876
Q ss_pred hcCCchHHHHhHHHhhhCCCC-C------cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh
Q 035847 291 HHIQLSTGVGIALISIQGLGT-G------SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR 363 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p-~------~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 363 (523)
....... . ...+ + ...+..+...+...+.. .++...+...... -..+..++..+..+|.+
T Consensus 224 ~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~ 290 (311)
T 3nf1_A 224 RAHEREF---G------SVDDENKPIWMHAEEREECKGKQKDGTSF--GEYGGWYKACKVD--SPTVTTTLKNLGALYRR 290 (311)
T ss_dssp HHHHHHH---C------------CCHHHHHHHHHHC-------CCS--CCCC-----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC---C------CCCcchHHHHHHHHHHHHhcCchhhHHHH--HHHHHHHhhcCCC--CchHHHHHHHHHHHHHH
Confidence 3111000 0 0011 1 12223333344444555 5566666655532 23346788899999999
Q ss_pred hCCHHHHHHHHHhC
Q 035847 364 AGQFDDTLNFMKKM 377 (523)
Q Consensus 364 ~g~~~~A~~~~~~m 377 (523)
.|++++|.+++++.
T Consensus 291 ~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 291 QGKFEAAETLEEAA 304 (311)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998763
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.86 E-value=1.6e-07 Score=93.25 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=173.5
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhHcc-
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY-YEEIVNLFYLLIDEG- 100 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g- 100 (523)
..|..+-..+.+.|+++.|...+...++.. ..+..+|+.+-..+.+.|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--------------P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--------------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------------ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 456667777788899999999999999875 2467899999999999997 999999999988765
Q ss_pred --------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhh
Q 035847 101 --------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHP 172 (523)
Q Consensus 101 --------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~ 172 (523)
+-.++...|++++|...++.+++.. +-+..+|..+-.++.+.|++++|+..|++
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~----------------- 225 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQ----------------- 225 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHH-----------------
Confidence 5566778899999999999999874 44778999999999999999999999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHh-cCChHHH-----HHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccC--
Q 035847 173 HHLKKDDLESDLLVNNSLMDFYAK-CRYLKVA-----HCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYG-- 241 (523)
Q Consensus 173 ~~~~~~g~~~d~~~~~~li~~~~k-~g~~~~A-----~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g-- 241 (523)
+++. -.-+...|+.+-..|.+ .|..++| ...|+... .| +...|+.+-. .+.+.|
T Consensus 226 -al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~------------ll~~~g~~ 290 (382)
T 2h6f_A 226 -LLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG------------ILQDRGLS 290 (382)
T ss_dssp -HHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHTTTCGG
T ss_pred -HHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH------------HHHccCcc
Confidence 1322 22357789999999999 6665777 36666543 34 5668988888 777777
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC---------ChhHHHHHHHHH-HH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK---------GFKLGKEIHGYV-LR 290 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~i~~~~-~~ 290 (523)
+.++|++.+.++ + .-..+...+..+...+.+.| ..++|.++++.+ .+
T Consensus 291 ~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 291 KYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp GCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 689999999988 2 23335677888888888764 258899998887 44
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.81 E-value=4.4e-08 Score=94.42 Aligned_cols=253 Identities=11% Similarity=0.042 Sum_probs=183.8
Q ss_pred chhHHHHHHHHhhhCCCCCC-----cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHH
Q 035847 2 VIKNVTLLLQSMDLTNPDEC-----TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSM 76 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~l 76 (523)
.+++|+..|++..+.. |+ ...+..+-..+...|+++.|...+.......-... .+.....+|..+
T Consensus 20 ~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~l 89 (338)
T 3ro2_A 20 DCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--------DQLGEAKASGNL 89 (338)
T ss_dssp CHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--------ccHHHHHHHHHH
Confidence 4689999999988863 43 35677888888899999999999988765311000 001235678889
Q ss_pred HHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCC--------------------hHHHHHHHHHH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKD--------------------HRVGKDVYDYM 121 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~--------------------~~~a~~~~~~m 121 (523)
-..|...|++++|+..|.+..... +...+...|+ ++.|.+.+...
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999998865431 5556667788 88888888876
Q ss_pred HHh----cCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC-CCchhHHHHHHHHHH
Q 035847 122 ISI----KFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL-ESDLLVNNSLMDFYA 195 (523)
Q Consensus 122 ~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~d~~~~~~li~~~~ 195 (523)
.+. +-.| ...++..+...|...|++++|...|+++ .++.. +. +. .....++..+...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~~---~~-~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR-----------LLIAK---EF-GDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----------HHHHH---HH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-----------HHHHH---hc-CChHHHHHHHHHHHHHHH
Confidence 543 1111 2347888889999999999999999881 11111 11 11 112447888899999
Q ss_pred hcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-C
Q 035847 196 KCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-N 261 (523)
Q Consensus 196 k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~ 261 (523)
+.|+.++|...+++..+ ++ ..++..+.. .|...|++++|...|++..+. +-.+ .
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN------------TYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999987642 22 346677777 888999999999999987653 1111 1
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 262 TISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 262 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
..++..+-..+...|+.++|.+.++...+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 446777888899999999999999988763
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.79 E-value=1.9e-07 Score=92.94 Aligned_cols=230 Identities=10% Similarity=0.019 Sum_probs=166.6
Q ss_pred HhhccCChHHHHHHHHHHHHhcC-CC----CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 104 ACSELKDHRVGKDVYDYMISIKF-EG----NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+...|+++.|.+.+....+.-- .+ ...++..+-..|...|+++.|...|++ +.+++.. ..
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~-----------al~~~~~---~~ 177 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ-----------AYEIYKE---HE 177 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHT---CS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------HHHHHHh---Cc
Confidence 35578999999999999886421 12 245788899999999999999999998 2222211 10
Q ss_pred CCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHH
Q 035847 179 DLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALE 248 (523)
Q Consensus 179 g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~ 248 (523)
...+ ...+++.+-..|...|++++|...|+...+ ++. .+|+.+-. .|...|++++|++
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~------------~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGL------------CKNSQSQYEDAIP 245 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------HHHHCCCHHHHHH
Confidence 1112 355788889999999999999999887542 222 36777777 8889999999999
Q ss_pred HHHHHHhc----CC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 249 FFSRMIQT----DM-QPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 249 lf~~M~~~----g~-~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
.|++..+. +. .....++..+-..+.+.|+.++|.+.++...+..-..+. ......++.+-..|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~l~~~~ 313 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD------------VIYLSEFEFLKSLY 313 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHH
Confidence 99988762 33 334567888888999999999999999888763211000 00112356677778
Q ss_pred HhcCC---CchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 324 GRCGA---IQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 324 ~~~g~---~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
...|+ . ++|..+++.. +..|+ ...+..+-..|...|++++|...+++.
T Consensus 314 ~~~~~~~~~--~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 314 LSGPDEEAI--QGFFDFLESK----MLYADLEDFAIDVAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp TSSCCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCcHHHH--HHHHHHHHHC----cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888 6 7888888766 33344 567778889999999999999998874
No 63
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.79 E-value=9.5e-08 Score=83.50 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=130.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.+.|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~A 61 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--------------------------AFDVDVALHLGIAYVKTGAVDRG 61 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--------------------------SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------ccChHHHHHHHHHHHHcCCHHHH
Confidence 3557777788888899999998888776543 44667788889999999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhh
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYA 226 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~ 226 (523)
...|++ ... -...+..++..+...|.+.|++++|...|+...+ .+...|..+..
T Consensus 62 ~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~--- 118 (186)
T 3as5_A 62 TELLER-------------------SLA-DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV--- 118 (186)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH---
T ss_pred HHHHHH-------------------HHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHH---
Confidence 999988 322 1234577888889999999999999999987642 45667888878
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+.+.|++++|.+.|++..+.. +.+..++..+...+...|+.++|.+.++...+.
T Consensus 119 ---------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 119 ---------ALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 8889999999999999988753 335678888888999999999999999888764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.79 E-value=1.7e-07 Score=82.54 Aligned_cols=164 Identities=7% Similarity=-0.013 Sum_probs=130.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+=..|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~la~~~~~~~~~~~ 57 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------------------------PNNVETLLKLGKTYMDIGLPND 57 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHCCCHHH
Confidence 56678888888888899999998888876643 3467788888899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~ 225 (523)
|...+.+ ... ....+..++..+-..+.+.++.+.|...+....+ .+...|..+-.
T Consensus 58 a~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~-- 115 (184)
T 3vtx_A 58 AIESLKK-------------------FVV-LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL-- 115 (184)
T ss_dssp HHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH--
T ss_pred HHHHHHH-------------------HHh-cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH--
Confidence 9999988 332 2233566777778888899999999998887542 45667887877
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.|.+.|++++|++.|++..+.. +-+..+|..+-.++.+.|+.++|.+.++..++.
T Consensus 116 ----------~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 116 ----------VYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ----------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----------HHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 8889999999999999988753 225677888888999999999999999988763
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.78 E-value=1.3e-07 Score=83.28 Aligned_cols=170 Identities=10% Similarity=0.050 Sum_probs=135.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...|..+-..+...|+++.|...++...+.. +.+..+|..+-..|.+.|++++|+..+.......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--------------PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55678888899999999999999999998874 2467889999999999999999999998876643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..++..+-..+...++++.|...+.+ ... -.
T Consensus 70 --------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-------------------a~~-~~ 103 (184)
T 3vtx_A 70 --------------------------TTSAEAYYILGSANFMIDEKQAAIDALQR-------------------AIA-LN 103 (184)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HC
T ss_pred --------------------------chhHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hC
Confidence 34556677777888888999999998888 222 12
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+.+..++..+-..|.+.|++++|...|+...+ .+..+|..+-. .|.+.|++++|++.|++..+
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~-- 169 (184)
T 3vtx_A 104 TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGL------------AYEGKGLRDEAVKYFKKALE-- 169 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH--
T ss_pred ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHH------------HHHHCCCHHHHHHHHHHHHh--
Confidence 33567788888899999999999999887653 35567888888 88899999999999998876
Q ss_pred CCCCHHH
Q 035847 258 MQPNTIS 264 (523)
Q Consensus 258 ~~p~~~t 264 (523)
+.|+...
T Consensus 170 ~~p~~a~ 176 (184)
T 3vtx_A 170 KEEKKAK 176 (184)
T ss_dssp TTHHHHH
T ss_pred CCccCHH
Confidence 3455433
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=4.7e-08 Score=97.92 Aligned_cols=271 Identities=13% Similarity=0.055 Sum_probs=192.0
Q ss_pred chhHHHHHHHHhhhCCCCCCc-----chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC--CCCcchHH
Q 035847 2 VIKNVTLLLQSMDLTNPDECT-----VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP--ERNVFSWT 74 (523)
Q Consensus 2 ~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~--~~~~~~~~ 74 (523)
.+++|+..|++.... .|+. ..|..+-..+...|+++.|...+....+..- ... .....+|.
T Consensus 63 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK----------SMNDRLGEAKSSG 130 (411)
T ss_dssp CHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------HccCchHHHHHHH
Confidence 467899999998876 3432 4677788888899999999999988875411 000 12457788
Q ss_pred HHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCC---------
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGR--------- 145 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 145 (523)
.+-..|...|++++|+..|++..... ...++. .....++..+-..|...|+
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 190 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-----RQLGDR---------------LSEGRALYNLGNVYHAKGKHLGQRNPGK 190 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHTCH---------------HHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-----HHhhch---------------HHHHHHHHHHHHHHHHcCcccccccchh
Confidence 89999999999999999998865421 111110 1124467788889999999
Q ss_pred --------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC----
Q 035847 146 --------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---- 212 (523)
Q Consensus 146 --------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---- 212 (523)
++.|...|++ +.++... . +..+ ...++..+-..|...|++++|...|++..+
T Consensus 191 ~~~~a~~~~~~A~~~~~~-----------al~~~~~---~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 191 FGDDVKEALTRAVEFYQE-----------NLKLMRD---L-GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp CCHHHHHHHHHHHHHHHH-----------HHHHHHH---H-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHH-----------HHHHHHH---c-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8888888777 1111111 1 2112 345788899999999999999999987643
Q ss_pred -CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC----C-CCHHHHHHHHHHhhccCChhHHH
Q 035847 213 -KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM----Q-PNTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 -~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~----~-p~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
++ ..+|..+.. .|...|++++|.+.|++...... . ....++..+-..+...|+.++|.
T Consensus 256 ~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (411)
T 4a1s_A 256 FGDRAAERRANSNLGN------------SHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323 (411)
T ss_dssp HTCHHHHHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcHHHHHHHHHHHH------------HHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 126777777 88899999999999998765311 1 12467778888899999999999
Q ss_pred HHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 283 EIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 283 ~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
+.++...+..-..... .....+|..+...|...|+. ++|..+|++..+.
T Consensus 324 ~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 372 (411)
T 4a1s_A 324 EYHNRHLAIAQELGDR-----------IGEARACWSLGNAHSAIGGH--ERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9998887632110000 01234678889999999999 9999999988764
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.77 E-value=2.8e-08 Score=95.04 Aligned_cols=246 Identities=11% Similarity=-0.012 Sum_probs=162.3
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc-
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE- 99 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 99 (523)
+..++..+...+...|+++.|..++..+.+..-.. ...-......+|..+...|...|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT------SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34567788888899999999999999988631000 00000224578899999999999999999999887653
Q ss_pred -----c-----------HHHHhhccCChHHHHHHHHHHHHh------cCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhc
Q 035847 100 -----G-----------VYKACSELKDHRVGKDVYDYMISI------KFEG-NACVKRPVLDMFIKCGRMEMASGEFEEK 156 (523)
Q Consensus 100 -----g-----------ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~ 156 (523)
+ +...+...|+++.|.+.+....+. +-.| ...++..+...|.+.|++++|...|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 667778899999999999998875 2222 3557888899999999999999999981
Q ss_pred cccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChhhHHHHHHh
Q 035847 157 DFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----------KHLVSWNAMLAG 224 (523)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----------~~~~t~~~li~~ 224 (523)
.++..... . +..| ...++..+...|.+.|+.++|...|++..+ +...........
T Consensus 180 -----------~~~~~~~~-~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 180 -----------LEIYQTKL-G-PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp -----------HHHHHHTS-C-TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred -----------HHHHHHHh-C-CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 11111100 0 1123 356788999999999999999999987652 111111111111
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+...+. .+...+.+.+|...++...... ..+..++..+..++.+.|+.++|.+.++...+.
T Consensus 247 ~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKG-----KQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-----chhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111111 5556677777777777766532 234577888889999999999999999988763
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.76 E-value=9e-07 Score=77.12 Aligned_cols=160 Identities=13% Similarity=0.031 Sum_probs=135.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p 260 (523)
...+..+...|.+.|++++|...|+.+.+ .+...|..+.. .+...|++++|.+.|++..+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~~~~~~-~~ 74 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGI------------AYVKTGAVDRGTELLERSLADA-PD 74 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 45677888899999999999999999875 35667888888 8889999999999999998753 33
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+...+..+...+...|++++|.+.++.+.+.. +.+...|..+...|...|+. ++|..+|+.
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~ 135 (186)
T 3as5_A 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----------------PINFNVRFRLGVALDNLGRF--DEAIDSFKI 135 (186)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------------cHhHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 57788888889999999999999999988752 23456788889999999999 999999999
Q ss_pred hHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 341 MKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 341 m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+. . ..+...+..+...+...|++++|.+.+++.
T Consensus 136 ~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 136 ALGL-R-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhc-C-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 2 345788999999999999999999998874
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.73 E-value=1.3e-07 Score=97.06 Aligned_cols=190 Identities=10% Similarity=-0.047 Sum_probs=131.9
Q ss_pred cchHHHHHHhccCCCCh-HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 22 TVTYALIFQRCPKLNNL-ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
...+..+-.++...|++ ++|...+....+.. ..+...|..+-..|.+.|++++|++.|++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~----- 162 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--------------PELVEAWNQLGEVYWKKGDVTSAHTCFSG----- 162 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----
Confidence 33444444455555555 55555555554432 12344555555555555555555555554
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc---------CCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC---------GRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
.++ +.|+..++..+-..|... |++++|...|+++
T Consensus 163 --------------------al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~a--------------- 205 (474)
T 4abn_A 163 --------------------ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA--------------- 205 (474)
T ss_dssp --------------------HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHH---------------
T ss_pred --------------------HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHH---------------
Confidence 443 357778888899999999 9999999999981
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhcCCC--C----ChhhHHHHHHhhhhcCCccccchh
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKC--------RYLKVAHCKFSKIKQ--K----HLVSWNAMLAGYALGGFREEITGF 237 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~--------g~~~~A~~vf~~m~~--~----~~~t~~~li~~~~~~g~~~~i~~~ 237 (523)
++. -..+...|..+-..|.+. |++++|...|+...+ | +...|..+-. .|
T Consensus 206 ---l~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~------------~~ 268 (474)
T 4abn_A 206 ---VQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT------------LH 268 (474)
T ss_dssp ---HHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH------------HH
T ss_pred ---HHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH------------HH
Confidence 222 223577889999999998 999999999988653 4 6678888888 88
Q ss_pred hccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
.+.|++++|++.|++..+. .| +...+..+-.++...|+.++|.+.+.
T Consensus 269 ~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998874 34 45567777777888887777776543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.72 E-value=2.2e-07 Score=95.45 Aligned_cols=214 Identities=14% Similarity=-0.040 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH-HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM-EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
++.+.+.++...... ..+...+..+-..|...|++ ++|...|+++ ++. -..+...|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~a------------------l~~--~p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKA------------------VKL--EPELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHH------------------HHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHH------------------Hhh--CCCCHHHHHH
Confidence 344455555444321 34677888888999999999 9999999981 222 1234778999
Q ss_pred HHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhcc---------CCchHHHHHHHHHHhcCC
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQY---------GDGETALEFFSRMIQTDM 258 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~---------g~~~~A~~lf~~M~~~g~ 258 (523)
+-..|.+.|++++|...|+... .|+...|..+-. .|.+. |++++|++.|++..+..
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~- 209 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM------------VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD- 209 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHH------------HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHH------------HHHHhccCChhhhhhhHHHHHHHHHHHHHhC-
Confidence 9999999999999999998865 477778888888 77788 99999999999998853
Q ss_pred CCCHHHHHHHHHHhhcc--------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 259 QPNTISLSGVLAACAQV--------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 259 ~p~~~t~~~ll~a~~~~--------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
+-+...|..+-.++... |++++|.+.++...+.. |.. ..+...|..+-..|...|+.
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~------------~~~~~~~~~lg~~~~~~g~~- 274 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD--RKA------------SSNPDLHLNRATLHKYEESY- 274 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--GGG------------GGCHHHHHHHHHHHHHTTCH-
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC--CCc------------ccCHHHHHHHHHHHHHcCCH-
Confidence 22567888888888888 99999999999998752 100 02567899999999999999
Q ss_pred hHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 331 KNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 331 ~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
++|...|++..+. .|+ ...+..+..++...|++++|.+.+.++
T Consensus 275 -~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 275 -GEALEGFSQAAAL---DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp -HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998865 455 567888999999999999999877665
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=4.6e-07 Score=92.53 Aligned_cols=296 Identities=8% Similarity=-0.032 Sum_probs=173.2
Q ss_pred hhHHHHHHHHhhhC-----C-CCCC-cchHHHHHHhcc--CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchH
Q 035847 3 IKNVTLLLQSMDLT-----N-PDEC-TVTYALIFQRCP--KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSW 73 (523)
Q Consensus 3 ~~~A~~l~~~m~~~-----g-~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~ 73 (523)
+++|...|++...- + ..++ ..++...-.++. ..+++++|...|+...+... .+...+
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p--------------~~~~~~ 175 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP--------------KNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST--------------TCHHHH
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC--------------CCHHHH
Confidence 46677666655431 1 1122 234443333332 34579999999999887642 244455
Q ss_pred HHHHHH---HHhcCCchHHHHHHHHhhHcc---------HHHHhh----ccCChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 74 TSMMGM---YNVLGYYEEIVNLFYLLIDEG---------VYKACS----ELKDHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 74 ~~li~~---~~~~g~~~~A~~l~~~m~~~g---------ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
..+... +...++.++|++.|++..+.. +...+. ..++.++|.+.++...... +.+..++..+-
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg 254 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHH
Confidence 444443 455688889999998766543 112222 3467889999999988764 45677889999
Q ss_pred HHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHh-------------------cC
Q 035847 138 DMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAK-------------------CR 198 (523)
Q Consensus 138 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k-------------------~g 198 (523)
..|.+.|++++|...|+++ ++. .+-+..++..+-..|.. .+
T Consensus 255 ~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~ 314 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKA------------------LEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHH------------------HHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHH------------------HHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999982 111 11234445444444432 12
Q ss_pred ChHHHHHHHhcCC---CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH--HHHHHHH-Hh
Q 035847 199 YLKVAHCKFSKIK---QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI--SLSGVLA-AC 272 (523)
Q Consensus 199 ~~~~A~~vf~~m~---~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~--t~~~ll~-a~ 272 (523)
..+.|...|+... ..+..+|..+-. .|.+.|++++|++.|++..+....|... .+..+.. ..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~------------~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILAS------------LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHH------------HHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHH------------HHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 3456666666543 235567888888 8899999999999999988765443321 1222221 23
Q ss_pred hccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHh
Q 035847 273 AQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME 352 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ 352 (523)
...|+.++|.+.+...++.. |+...+... . ..+..+++...+. -+.+..
T Consensus 383 ~~~~~~~~Ai~~y~kal~i~------------------~~~~~~~~~---------~--~~l~~~~~~~l~~--~p~~~~ 431 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKIN------------------QKSREKEKM---------K--DKLQKIAKMRLSK--NGADSE 431 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHSC------------------CCCHHHHHH---------H--HHHHHHHHHHHHH--CC-CTT
T ss_pred HHCCCHHHHHHHHHHHHhcC------------------cccHHHHHH---------H--HHHHHHHHHHHHh--CCCCHH
Confidence 46789999999998887632 222111111 1 3334444444332 133456
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 353 QYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 353 ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
+|..+-..|...|++++|.+.+++
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777777777777766
No 72
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.64 E-value=2.7e-07 Score=86.60 Aligned_cols=198 Identities=12% Similarity=0.047 Sum_probs=142.6
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------- 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------- 212 (523)
...|+++.|...|++ +.++....... .......++..+-..|...|++++|...|++..+
T Consensus 12 ~~~~~~~~A~~~~~~-----------al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 79 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQ-----------ALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79 (283)
T ss_dssp -CCSCSSSHHHHHHH-----------HHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHHH-----------HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC
Confidence 456778888888877 33333332222 2233567889999999999999999999987541
Q ss_pred --C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc------CCCC-CHHHHHHHHHHhhccCChhHHH
Q 035847 213 --K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT------DMQP-NTISLSGVLAACAQVKGFKLGK 282 (523)
Q Consensus 213 --~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~ 282 (523)
| ...+|+.+-. .|...|++++|++.|++.... .-.| ...++..+-..+...|++++|.
T Consensus 80 ~~~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 147 (283)
T 3edt_B 80 DHPAVAATLNNLAV------------LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147 (283)
T ss_dssp TCHHHHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred cchHHHHHHHHHHH------------HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1 2346777777 888999999999999998764 1123 3567888888999999999999
Q ss_pred HHHHHHHHhc---CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc-----C--------
Q 035847 283 EIHGYVLRHH---IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY-----N-------- 346 (523)
Q Consensus 283 ~i~~~~~~~g---~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~-----g-------- 346 (523)
+.+....+.- ..++. .....++..+...|...|+. ++|..+|++..+.. +
T Consensus 148 ~~~~~al~~~~~~~~~~~------------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 213 (283)
T 3edt_B 148 YYYRRALEIYATRLGPDD------------PNVAKTKNNLASCYLKQGKY--QDAETLYKEILTRAHEKEFGSVNGDNKP 213 (283)
T ss_dssp HHHHHHHHHHHHHSCTTC------------HHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHHSSSCCSSCCC
T ss_pred HHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcchhHHH
Confidence 9999987741 00000 01345788899999999999 99999998887530 0
Q ss_pred ---------------------------------CccC-HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 347 ---------------------------------MEPA-MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 347 ---------------------------------~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
..|+ ..++..+...|.+.|++++|..++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 214 IWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp HHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122 45677788888888999998888876
No 73
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.60 E-value=4.2e-07 Score=74.55 Aligned_cols=127 Identities=15% Similarity=0.221 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASG 151 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 151 (523)
+|..+...+.+.|++++|+.+|+++...+ +.+..++..+...|...|++++|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PRSAEAWYNLGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------CcchhHHHHHHHHHHHhcCHHHHHH
Confidence 46677777777788888888877765532 3456778888899999999999999
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHHhhhhc
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALG 228 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~ 228 (523)
.|++ ... ....+..++..+...|.+.|++++|...|+.+.+ .+..+|..+..
T Consensus 57 ~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~----- 111 (136)
T 2fo7_A 57 YYQK-------------------ALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN----- 111 (136)
T ss_dssp HHHH-------------------HHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-----
T ss_pred HHHH-------------------HHH-HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH-----
Confidence 9998 332 1234567888899999999999999999987653 35677888888
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhc
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+.+.|++++|.+.|+++...
T Consensus 112 -------~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 112 -------AYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -------HHHTTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHccHHHHHHHHHHHHcc
Confidence 888999999999999998764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.59 E-value=1e-05 Score=79.66 Aligned_cols=221 Identities=9% Similarity=0.034 Sum_probs=144.5
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc----chHHHHHHHHHhcCCchHHHHHHHHhhHc----c--
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV----FSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-- 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-- 100 (523)
.+...|+++.|...+.......- ..+. .+++.+-..|...|++++|.+.+++.... |
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-------------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-------------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 44568999999999988776431 1122 35667777888899999999999886542 1
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhc----CC--C-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIK----FE--G-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g----~~--p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+-..+...|+++.|.+.++...+.. .. | ...++..+-..|...|++++|...++++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------- 161 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG-------- 161 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------
Confidence 4455677899999999998887643 11 2 2345666778899999999999999981
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-hhHHHH---HHhhhhcCCccccch
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK----QKHL-VSWNAM---LAGYALGGFREEITG 236 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~----~~~~-~t~~~l---i~~~~~~g~~~~i~~ 236 (523)
..+ ....+......++..+-..+...|++++|...+++.. .++. ..|... ..+. .
T Consensus 162 ---l~~----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~----------~ 224 (373)
T 1hz4_A 162 ---IEV----LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI----------Y 224 (373)
T ss_dssp ---HHH----TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----------H
T ss_pred ---HHH----hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH----------H
Confidence 000 0110211134567888889999999999999988653 2222 233322 2200 4
Q ss_pred hhccCCchHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 237 FTQYGDGETALEFFSRMIQTDMQPN---TISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 237 ~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+...|++++|...+++.......++ ...+..+...+...|+.++|...++...
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6688999999999988765332111 2234444455555666666666555443
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.58 E-value=4.8e-06 Score=82.49 Aligned_cols=306 Identities=12% Similarity=0.046 Sum_probs=198.0
Q ss_pred CCCCcchHHHHHHhc--cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC-CCCcchHHHHHHHH--HhcCCchHHH--
Q 035847 18 PDECTVTYALIFQRC--PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP-ERNVFSWTSMMGMY--NVLGYYEEIV-- 90 (523)
Q Consensus 18 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~-~~~~~~~~~li~~~--~~~g~~~~A~-- 90 (523)
+.|+...=+.|-..+ .+.++++.|..+.+.+.+.. +.|. ..++..|-.|+..- .-.+....+.
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~----------~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~ 75 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDI----------QQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTY 75 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHG----------GGBCCCHHHHHHHHHHHHHHHHHHHTCCC----
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH----------HHhcccHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 344554445555555 57889999999999987642 1221 12233232222210 0011222222
Q ss_pred -------HHHHHhhHcc--------------HHHHhhccCChHHHHHHHHHHHHhcC-CCC----ceeHhHHHHHHHhcC
Q 035847 91 -------NLFYLLIDEG--------------VYKACSELKDHRVGKDVYDYMISIKF-EGN----ACVKRPVLDMFIKCG 144 (523)
Q Consensus 91 -------~l~~~m~~~g--------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g 144 (523)
+.++.+.... .-..+...|+++.|...+....+..- .+| ..++..+-..|...|
T Consensus 76 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 76 GNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp ----CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC
Confidence 4444433211 12234578999999999998876521 122 457788889999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh---
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KHL--- 215 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~~--- 215 (523)
+++.|...+++ +.+++. +..+..+ ...+++.+-..|...|++++|...|+...+ ++.
T Consensus 156 ~~~~A~~~~~~-----------al~~~~---~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 156 QTHVSMYHILQ-----------ALDIYQ---NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp CHHHHHHHHHH-----------HHHHHH---TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHH-----------HHHHHH---hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999988 222221 1101122 356788899999999999999998876542 222
Q ss_pred -hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 216 -VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 216 -~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+++.+-. .|...|++++|++.|++.... +-+....++..+-..+.+.|+.++|...++...+
T Consensus 222 ~~~~~~lg~------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 222 AISLLNIAN------------SYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35666766 888999999999999988761 2222367788888899999999999999999887
Q ss_pred hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCC---CchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCC
Q 035847 291 HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGA---IQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQ 366 (523)
Q Consensus 291 ~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~---~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~ 366 (523)
..-..+. ......++.+-..|...|+ . .+|..+++.. +..|+ ...+..+-..|...|+
T Consensus 290 ~~~~~~~------------~~~~~~~~~l~~ly~~~~~~~~~--~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 290 HITARSH------------KFYKELFLFLQAVYKETVDERKI--HDLLSYFEKK----NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HCCTTCC------------SCHHHHHHHHHHHHSSSCCHHHH--HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCC------------HHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCC
Confidence 4322110 0112235556666667777 6 7888888763 33444 4567788889999999
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
+++|...+++.
T Consensus 352 ~~~A~~~~~~a 362 (378)
T 3q15_A 352 FEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998874
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.53 E-value=2.2e-05 Score=77.25 Aligned_cols=251 Identities=8% Similarity=-0.018 Sum_probs=169.9
Q ss_pred hhHHHHHHHHhhhCCCCCCcc----hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC--CcchHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTV----TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER--NVFSWTSM 76 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~--~~~~~~~l 76 (523)
+++|+..+++........+.. +++.+-..+...|+++.|...+.+.....-. ...+ ...+++.+
T Consensus 30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHH
Confidence 578888888876643222222 3455556677889999999999887753210 0011 12346677
Q ss_pred HHHHHhcCCchHHHHHHHHhhHc----------c-------HHHHhhccCChHHHHHHHHHHHHhcCCC----CceeHhH
Q 035847 77 MGMYNVLGYYEEIVNLFYLLIDE----------G-------VYKACSELKDHRVGKDVYDYMISIKFEG----NACVKRP 135 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~~----------g-------ll~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ 135 (523)
-..+...|++++|+..+++.... + +-..+...|++++|.+.+.......-.. ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 78888999999999999876542 1 4455678899999999999988654221 1245777
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH--HHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN--NSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~--~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
+-..+...|++++|...++++ ..+ ....+..+..... ...+..+...|+.++|...++...++
T Consensus 180 la~~~~~~g~~~~A~~~l~~a-----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRL-----------ENL----LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH-----------HHH----HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----------HHH----HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 888899999999999999981 111 0111221111111 13445578999999999999988653
Q ss_pred Ch-------hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCCCHH-HHHHHHHHhhccCChhHH
Q 035847 214 HL-------VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQPNTI-SLSGVLAACAQVKGFKLG 281 (523)
Q Consensus 214 ~~-------~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a 281 (523)
+. ..+..+.. .+...|++++|.+.+++.... |..++.. ++..+-.++...|+.++|
T Consensus 245 ~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIAR------------AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp CCTTCGGGHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcchhhHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 21 23555656 788899999999999987652 3222332 555666778889999999
Q ss_pred HHHHHHHHH
Q 035847 282 KEIHGYVLR 290 (523)
Q Consensus 282 ~~i~~~~~~ 290 (523)
...+.....
T Consensus 313 ~~~l~~al~ 321 (373)
T 1hz4_A 313 QRVLLDALK 321 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888765
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.52 E-value=3e-06 Score=84.10 Aligned_cols=280 Identities=9% Similarity=-0.062 Sum_probs=182.2
Q ss_pred HHhcCCchHHHHHHHHhhHcc--------HH------H--HhhccCChHHHH-----------HHHHHHHHhcCCCC---
Q 035847 80 YNVLGYYEEIVNLFYLLIDEG--------VY------K--ACSELKDHRVGK-----------DVYDYMISIKFEGN--- 129 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~~~g--------ll------~--~~~~~~~~~~a~-----------~~~~~m~~~g~~p~--- 129 (523)
+.+.+++++|..++++..+.- ++ . .....++++.+. +.++.+....-..+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 345789999999998875432 11 1 111123333444 56665543211111
Q ss_pred -ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 130 -ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 130 -~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
...+-..-..+...|++++|...|+++ .++ .+..+-.+ ...++..+-..|...|+.++|...+
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~----~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~ 166 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKA-----------ESK----LIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HTT----GGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHH----HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 011112445677889999999999981 111 01101122 3568888999999999999998888
Q ss_pred hcCCC-----CC-----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-CHHHHHHHHHHh
Q 035847 208 SKIKQ-----KH-----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-NTISLSGVLAAC 272 (523)
Q Consensus 208 ~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~t~~~ll~a~ 272 (523)
++..+ ++ ..+++.+-. .|...|++++|++.|++..+. +-.| ...++..+-..+
T Consensus 167 ~~al~~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 167 RQAYEIYKEHEAYNIRLLQCHSLFAT------------NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp HHHHHHHHTCSTTHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 76532 22 246777777 888999999999999987653 1111 124777888889
Q ss_pred hccCChhHHHHHHHHHHHh----cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---
Q 035847 273 AQVKGFKLGKEIHGYVLRH----HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY--- 345 (523)
Q Consensus 273 ~~~g~~~~a~~i~~~~~~~----g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~--- 345 (523)
...|+.++|.+.+....+. +..|+ ...++..+-..|.+.|+. ++|..+|+...+..
T Consensus 235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 235 NSQSQYEDAIPYFKRAIAVFEESNILPS---------------LPQAYFLITQIHYKLGKI--DKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGG---------------HHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhccchh---------------HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHc
Confidence 9999999999999988773 11111 235688899999999999 99999998876531
Q ss_pred CCccCHhHHHHHHHHHHhhCC---HHHHHHHHHhCCCCCCCC-----------CCCCHHHHHHHHHHHHhhC
Q 035847 346 NMEPAMEQYCCMVDLLARAGQ---FDDTLNFMKKMPFEPSSA-----------EPCNPDIAEHAARHLFELE 403 (523)
Q Consensus 346 g~~p~~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-----------~~~~~~~~~~~~~~l~~~~ 403 (523)
+-......+..+-..+...|+ +++|..++++.+..|+.. ..|+.+.|....++.+++.
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 111123446677788888998 999999999985443332 4566666666655555543
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.52 E-value=1.1e-06 Score=82.48 Aligned_cols=223 Identities=11% Similarity=0.027 Sum_probs=145.3
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|++++........+....++..+-..+...|+++.|...+....+..-. .+.........+|+.+-..|..
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK------TLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------HTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH------HcCCcchHHHHHHHHHHHHHHH
Confidence 3566666666654333335667888889999999999999999988865200 0000011245789999999999
Q ss_pred cCCchHHHHHHHHhhHc---------c--------HHHHhhccCChHHHHHHHHHHHHh------cCCC-CceeHhHHHH
Q 035847 83 LGYYEEIVNLFYLLIDE---------G--------VYKACSELKDHRVGKDVYDYMISI------KFEG-NACVKRPVLD 138 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~---------g--------ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~ 138 (523)
.|++++|++.|.+.... . +...+...|++++|.+.+...++. +-.| ...++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 177 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLAS 177 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999987654 1 666778899999999999999876 1122 3567888999
Q ss_pred HHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCC------hHHHHHHHhcCC
Q 035847 139 MFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRY------LKVAHCKFSKIK 211 (523)
Q Consensus 139 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~------~~~A~~vf~~m~ 211 (523)
.|.+.|++++|...|+++ .++....... ...+. ...+..+...+...+. +..+...++...
T Consensus 178 ~~~~~g~~~~A~~~~~~~-----------l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T 3edt_B 178 CYLKQGKYQDAETLYKEI-----------LTRAHEKEFG-SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK 245 (283)
T ss_dssp HHHHHTCHHHHHHHHHHH-----------HHHHHHHHSS-SCCSSCCCHHHHHHHHHHTTCCCCC------------CCC
T ss_pred HHHHcCCHHHHHHHHHHH-----------HHHHHHhcCC-CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC
Confidence 999999999999999981 1111110001 12222 2233333333333222 344444444444
Q ss_pred CC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 QK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.. ...+|..+.. .|.+.|++++|..+|++..+
T Consensus 246 ~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 246 VDSPTVNTTLRSLGA------------LYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHH
Confidence 32 2346777777 88999999999999998765
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.48 E-value=0.00022 Score=75.81 Aligned_cols=191 Identities=10% Similarity=0.055 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHhcCChHHHH-HHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC--
Q 035847 185 LVNNSLMDFYAKCRYLKVAH-CKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM-- 258 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~-~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~-- 258 (523)
.+|-.....+-+.|+.++|. .+|++... | +...|-..+. ..-+.|++++|.++|+.+.....
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~------------~ee~~~~~e~aR~iyek~l~~l~~~ 411 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSE------------QYELNTKIPEIETTILSCIDRIHLD 411 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34444445555678888885 88876542 4 3444666666 67788999999999999886420
Q ss_pred -------CCC------------HHHHHHHHHHhhccCChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHH
Q 035847 259 -------QPN------------TISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNS 318 (523)
Q Consensus 259 -------~p~------------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~ 318 (523)
.|+ ...|...+....+.|.++.|+++++..++. +.. .+.+....+
T Consensus 412 ~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~---------------~~~lyi~~A 476 (679)
T 4e6h_A 412 LAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV---------------TPDIYLENA 476 (679)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS---------------CTHHHHHHH
T ss_pred hhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---------------ChHHHHHHH
Confidence 142 346777788888889999999999999885 211 112222233
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-------------
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA------------- 384 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~------------- 384 (523)
.+.-. ..++. +.|..+|+...+.++ -+..-+...++.....|+.+.|..+|++. ...|+..
T Consensus 477 ~lE~~-~~~d~--e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 477 YIEYH-ISKDT--KTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHT-TTSCC--HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHH-hCCCH--HHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33322 23458 999999999988633 23445568888888899999999999984 3344321
Q ss_pred -CCCCHHHHHHHHHHHHhhCCCCC
Q 035847 385 -EPCNPDIAEHAARHLFELEPLSS 407 (523)
Q Consensus 385 -~~~~~~~~~~~~~~l~~~~~~~~ 407 (523)
.+|+.+.+..+.+++.+..|+++
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 89999999999999999999865
No 80
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.48 E-value=5.5e-06 Score=84.38 Aligned_cols=294 Identities=7% Similarity=-0.065 Sum_probs=151.2
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCCh---HHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHH
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNL---ELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGM 79 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~ 79 (523)
+++|+.+|++..+.|-. .++..|-..+...|+. ++|...+...... +...+..|-..
T Consensus 19 ~~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----------------~~~A~~~Lg~~ 78 (452)
T 3e4b_A 19 TVTAQQNYQQLAELGYS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----------------SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHTCC---TGGGTCC---------------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----------------CHHHHHHHHHH
Confidence 45666666666555422 2222222223334444 5666655554421 34445445443
Q ss_pred HHhcC-----CchHHHHHHHHhhHcc-------HHHHhhccCChH---HHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 80 YNVLG-----YYEEIVNLFYLLIDEG-------VYKACSELKDHR---VGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 80 ~~~~g-----~~~~A~~l~~~m~~~g-------ll~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
+...| ++++|+..|++-...| +-..+...+... .+.+.+......| +......|-..|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44443 5567777777666655 333333333222 2333333333333 3445555666666666
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChhhH
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR---YLKVAHCKFSKIKQ---KHLVSW 218 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g---~~~~A~~vf~~m~~---~~~~t~ 218 (523)
.++.+...... +... . ...+...+..|-.+|.+.| +.++|...|+...+ ++...+
T Consensus 156 ~~~~~~~~a~~--------------~~~~-a----~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~ 216 (452)
T 3e4b_A 156 TYDQHLDDVER--------------ICKA-A----LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRV 216 (452)
T ss_dssp CGGGGHHHHHH--------------HHHH-H----TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred CcccCHHHHHH--------------HHHH-H----HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 44333322211 1111 1 1223337888888899999 88999999887543 344444
Q ss_pred HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHH-h--hccCChhHHHHHHHHHHHhcCCc
Q 035847 219 NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAA-C--AQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 219 ~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
..|-..|.. +....+++++|++.|+... .| +...+..+-.. + ...++.++|.+.+....+.|
T Consensus 217 ~~Lg~~y~~--------g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 217 DSVARVLGD--------ATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHHHHHHTC--------GGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhC--------CCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 555552211 1222378999999999987 43 33334444333 2 45889999999999998876
Q ss_pred hHHHHhHHHhhhCCCCCcchHHHHHHHHHhcC-----CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh----hCC
Q 035847 296 STGVGIALISIQGLGTGSFVWNSLIDMYGRCG-----AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR----AGQ 366 (523)
Q Consensus 296 ~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g-----~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~ 366 (523)
+...++.|-..|. .| +. ++|..+|+... . | +...+..|-..|.. ..+
T Consensus 282 ----------------~~~A~~~Lg~~y~-~G~g~~~d~--~~A~~~~~~Aa-~-g---~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 282 ----------------QPRAELLLGKLYY-EGKWVPADA--KAAEAHFEKAV-G-R---EVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp ----------------CHHHHHHHHHHHH-HCSSSCCCH--HHHHHHHHTTT-T-T---CHHHHHHHHHHHHTTTTSSCC
T ss_pred ----------------CHHHHHHHHHHHH-cCCCCCCCH--HHHHHHHHHHh-C-C---CHHHHHHHHHHHHCCCCCCcC
Confidence 2234455555554 44 66 88888887765 2 3 44555555555554 348
Q ss_pred HHHHHHHHHhC
Q 035847 367 FDDTLNFMKKM 377 (523)
Q Consensus 367 ~~~A~~~~~~m 377 (523)
.++|..++++-
T Consensus 338 ~~~A~~~~~~A 348 (452)
T 3e4b_A 338 PQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888774
No 81
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.48 E-value=8.7e-06 Score=82.89 Aligned_cols=294 Identities=8% Similarity=0.008 Sum_probs=180.3
Q ss_pred HHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCc---hHHHHHHHHhhHcc-----
Q 035847 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYY---EEIVNLFYLLIDEG----- 100 (523)
Q Consensus 29 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g----- 100 (523)
-..+.+.|++++|.+++....+.|. ..++..|-..|...|.. ++|+..|++..+..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~----------------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~ 73 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGY----------------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC----------------CTGGGTCC----------------------------CHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 3444567889999999998887763 33333444445556676 78888887655432
Q ss_pred -HHHHhhccC-----ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 -VYKACSELK-----DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 -ll~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+-..+...+ +.++|...+....+.|. ...+..|-..|...+..+.+...++. ....
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~---------------~~~a 135 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQ---------------ISQW 135 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHH---------------HHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHH---------------HHHH
Confidence 222133333 67788888888887652 33677777777776654433222222 0001
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcC----ChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccC---CchHHH
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCR----YLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYG---DGETAL 247 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g----~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g---~~~~A~ 247 (523)
... | +...+..|-..|...+ +.+.|..+++.....+...+..|-. .|.+.| +.++|+
T Consensus 136 ~~~-g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~------------~~~~~g~~~~~~~A~ 199 (452)
T 3e4b_A 136 QAA-G---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELAT------------VYQKKQQPEQQAELL 199 (452)
T ss_dssp HHH-T---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHH------------HHHHTTCHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHH------------HHHHcCCcccHHHHH
Confidence 112 3 2446667777777777 4556666777766666668888888 777888 899999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhcc----CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHH-
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAACAQV----KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDM- 322 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~- 322 (523)
+.|+...+.|. ++...+..|-..|... ++.++|.+.+.... .| +...++.|-..
T Consensus 200 ~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-------------------~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 200 KQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-------------------YPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-------------------STHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-------------------CHHHHHHHHHHH
Confidence 99999988874 4455444455556554 68899999998887 44 33455555554
Q ss_pred H--HhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhC-----CHHHHHHHHHhCCCCCCCC-----------
Q 035847 323 Y--GRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAG-----QFDDTLNFMKKMPFEPSSA----------- 384 (523)
Q Consensus 323 ~--~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~----------- 384 (523)
| ...++. ++|..+|+...+. | +...+..|-..|. .| ++++|.+++++-- |+..
T Consensus 259 ~~~~~~~d~--~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 259 YDFPELGDV--EQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYR 329 (452)
T ss_dssp HHSGGGCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHH
T ss_pred HhCCCCCCH--HHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 3 457888 9999999998876 6 5666777777776 56 9999999999976 4444
Q ss_pred ----CCCCHHHHHHHHHHHHhh
Q 035847 385 ----EPCNPDIAEHAARHLFEL 402 (523)
Q Consensus 385 ----~~~~~~~~~~~~~~l~~~ 402 (523)
...|.+.|...+++..+.
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHhh
Confidence 345888887777777654
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.46 E-value=2.9e-06 Score=69.32 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=105.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.|..+...|...|++++|..+|++ ... ....+..++..+...|...|++++|...|+.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQK-------------------ALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH-------------------HHH-cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 467788899999999999999998 322 123357788889999999999999999999875
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
+ .+...|..+.. .+.+.|++++|.+.|+++.+.. +.+..++..+...+...|+.+.|.+.+..+
T Consensus 63 ~~~~~~~~~~~~l~~------------~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 63 ELDPRSAEAWYNLGN------------AYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHCTTCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHCCCchHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 3 45667888888 8889999999999999998753 235678888899999999999999999988
Q ss_pred HHh
Q 035847 289 LRH 291 (523)
Q Consensus 289 ~~~ 291 (523)
.+.
T Consensus 130 ~~~ 132 (136)
T 2fo7_A 130 LEL 132 (136)
T ss_dssp HHH
T ss_pred Hcc
Confidence 764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.43 E-value=2.4e-06 Score=91.82 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=123.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+..+|+.|-..|.+.|++++|++.|++..+.. +-+..+|+.|-..|.+.|++++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------------------------P~~~~a~~nLg~~l~~~g~~~e 61 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------------------PEFAAAHSNLASVLQQQGKLQE 61 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------SCCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 46788999999999999999999998876632 2346678888888888888888
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAG 224 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~ 224 (523)
|...|+++ ++. .| +...|+.+-..|.+.|++++|.+.|++..+ | +...|+.+-.
T Consensus 62 A~~~~~~A------------------l~l---~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~- 119 (723)
T 4gyw_A 62 ALMHYKEA------------------IRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS- 119 (723)
T ss_dssp HHHHHHHH------------------HHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-
T ss_pred HHHHHHHH------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Confidence 88888871 222 34 366788888888888888888888876542 3 4567888877
Q ss_pred hhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 225 YALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 225 ~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|++.|++..+. .|+ ...|..+..++...|++++|.+.++.+.+
T Consensus 120 -----------~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 120 -----------IHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -----------HHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -----------HHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 788888888888888887773 454 56777888888888888888887777655
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.39 E-value=2.6e-06 Score=91.56 Aligned_cols=162 Identities=7% Similarity=-0.012 Sum_probs=133.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+..+|+.|-.++.+.|++++|...+++.++.. ..+..+|+.+-..|.+.|++++|++.|++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--------------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--------------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34678889899999999999999999998864 2367899999999999999999999998877633
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+-+..+|+.+-..|.+.|++++|.+.|+++ ++.
T Consensus 74 --------------------------P~~~~a~~nLg~~l~~~g~~~~A~~~~~kA------------------l~l--- 106 (723)
T 4gyw_A 74 --------------------------PTFADAYSNMGNTLKEMQDVQGALQCYTRA------------------IQI--- 106 (723)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH---
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh---
Confidence 334678889999999999999999999881 222
Q ss_pred CC-chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 181 ES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 181 ~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.| +...|+.+-..|.+.|++++|...|++.. .| +...|..+.. .|.+.|++++|.+.|++..+
T Consensus 107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~------------~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH------------CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH------------HHHHTTCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh------------HHHhcccHHHHHHHHHHHHH
Confidence 33 46788999999999999999999998765 34 4567888888 88888999988888887654
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.35 E-value=6.3e-06 Score=75.09 Aligned_cols=158 Identities=9% Similarity=-0.096 Sum_probs=113.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
|...|...-..+.+.|++++|+..|++..+.. -.++..++..+-..|.+.|++++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 60 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-------------------------NNQDSVTAYNCGVCADNIKKYKE 60 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------------------TTCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-------------------------CCCCcHHHHHHHHHHHHhhcHHH
Confidence 45667777777778888888888887766533 12677777778999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhHHHHHHhh
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSWNAMLAGY 225 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~~~li~~~ 225 (523)
|...|++ ... --+.+..+|..+-..|.+.|+.++|...|+...+ |+ ...+..+...|
T Consensus 61 A~~~~~~-------------------al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 61 AADYFDI-------------------AIK-KNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHH-------------------HHH-TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------HHH-hCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999998 222 1223577899999999999999999999987653 43 32322233333
Q ss_pred hhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC---HHHHHHHHHHhhccCCh
Q 035847 226 ALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN---TISLSGVLAACAQVKGF 278 (523)
Q Consensus 226 ~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~g~~ 278 (523)
...|. .+.+.|++++|++.|++..+. .|+ ...+..+-.++...|..
T Consensus 121 ~~~g~-----~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQ-----KFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHH-----HHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhH-----HHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 32222 788899999999999998874 565 45566666666666655
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.35 E-value=9.4e-06 Score=73.92 Aligned_cols=191 Identities=8% Similarity=0.013 Sum_probs=134.8
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
|...+...-..+...|++++|...+....+... .++...|..+-..|.+.|++++|+..|++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 456677777788899999999999999988752 2577777778889999999999999998877643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDL 180 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~ 180 (523)
+.+..+|..+-..|.+.|++++|...|+++ ++.
T Consensus 73 --------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------------------l~~--- 105 (228)
T 4i17_A 73 --------------------------YNLANAYIGKSAAYRDMKNNQEYIATLTEG------------------IKA--- 105 (228)
T ss_dssp --------------------------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH---
T ss_pred --------------------------cchHHHHHHHHHHHHHcccHHHHHHHHHHH------------------HHH---
Confidence 335667888999999999999999999981 222
Q ss_pred CC-ch-------hHHHHHHHHHHhcCChHHHHHHHhcCCC--CC---hhhHHHHHHhhhhcCCccccchhhccCCchHHH
Q 035847 181 ES-DL-------LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH---LVSWNAMLAGYALGGFREEITGFTQYGDGETAL 247 (523)
Q Consensus 181 ~~-d~-------~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~---~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~ 247 (523)
.| +. .+|..+-..+.+.|++++|...|+...+ |+ ...|..+-. .|...| .
T Consensus 106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~------------~~~~~~-----~ 168 (228)
T 4i17_A 106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV------------LFYNNG-----A 168 (228)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH------------HHHHHH-----H
T ss_pred CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH------------HHHHHH-----H
Confidence 22 23 4577788888999999999999998765 44 345666655 444333 3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+++++...+ ..+...|..... ...+.+++|...++...+.
T Consensus 169 ~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 169 DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3444444432 223334433322 2345567777777777764
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.33 E-value=8.5e-06 Score=77.65 Aligned_cols=174 Identities=11% Similarity=-0.024 Sum_probs=124.2
Q ss_pred CchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHh----cCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhcccc
Q 035847 85 YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISI----KFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFS 159 (523)
Q Consensus 85 ~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 159 (523)
++++|.+.|.+. ...+...|++++|.+.+....+. |-.++ ..+|+.+-..|.+.|++++|...|++
T Consensus 32 ~~~~A~~~~~~a-----~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~---- 102 (292)
T 1qqe_A 32 KFEEAADLCVQA-----ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN---- 102 (292)
T ss_dssp HHHHHHHHHHHH-----HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----
T ss_pred cHHHHHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH----
Confidence 467777777663 34556667777777777666543 21111 46888999999999999999999998
Q ss_pred ccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhc-CChHHHHHHHhcCCC--C---C----hhhHHHHHHhhhhc
Q 035847 160 NLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKC-RYLKVAHCKFSKIKQ--K---H----LVSWNAMLAGYALG 228 (523)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~-g~~~~A~~vf~~m~~--~---~----~~t~~~li~~~~~~ 228 (523)
+.++... . |-.+ -..+++.+-..|.+. |++++|...|++..+ | + ..+|+.+-.
T Consensus 103 -------Al~l~~~---~-g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~----- 166 (292)
T 1qqe_A 103 -------AIQIFTH---R-GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD----- 166 (292)
T ss_dssp -------HHHHHHH---T-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred -------HHHHHHH---c-CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----
Confidence 2222211 1 2111 245788899999996 999999999987642 1 1 245777777
Q ss_pred CCccccchhhccCCchHHHHHHHHHHhcCCCCCH------HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 229 GFREEITGFTQYGDGETALEFFSRMIQTDMQPNT------ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 229 g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.|.+.|++++|+..|++.......... .+|..+..++...|+.+.|...++...+
T Consensus 167 -------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 167 -------LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp -------HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred -------HHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 889999999999999999875433222 1566777788889999999999887754
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.33 E-value=2.4e-05 Score=77.45 Aligned_cols=268 Identities=9% Similarity=-0.005 Sum_probs=169.5
Q ss_pred chHHHHHHHH--HhcCCchHHHHHHHHhhHcc--------HH------H--HhhccCChHHHH---------HHHHHHHH
Q 035847 71 FSWTSMMGMY--NVLGYYEEIVNLFYLLIDEG--------VY------K--ACSELKDHRVGK---------DVYDYMIS 123 (523)
Q Consensus 71 ~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g--------ll------~--~~~~~~~~~~a~---------~~~~~m~~ 123 (523)
.+=+.|-.-| .+.+++++|..++++..... ++ . .....+.+.... +.++.+..
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 3334444444 67899999999998865432 11 1 111112222233 55555433
Q ss_pred hcCCCCc----eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcC
Q 035847 124 IKFEGNA----CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCR 198 (523)
Q Consensus 124 ~g~~p~~----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g 198 (523)
..-..+. ..+-..-..+...|++++|...|+++ .++. +..+-. ....++..+-..|...|
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~a-----------l~~~----~~~~~~~~~a~~~~~lg~~y~~~~ 155 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA-----------EKEL----PFVSDDIEKAEFHFKVAEAYYHMK 155 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HTTG----GGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHH----hhCCChHHHHHHHHHHHHHHHHcC
Confidence 2111110 01222233456789999999999881 1110 110111 13557888899999999
Q ss_pred ChHHHHHHHhcCCC-----CC-----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC-CHH
Q 035847 199 YLKVAHCKFSKIKQ-----KH-----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP-NTI 263 (523)
Q Consensus 199 ~~~~A~~vf~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p-~~~ 263 (523)
+.+.|...++...+ ++ ..+++.+-. .|...|++++|++.|++..+. +-.+ ...
T Consensus 156 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~------------~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG------------NYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998887776431 22 246777777 888999999999999887652 2111 235
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
++..+-..+...|+.++|.+.+....+..-.. +-+....++..+-..|.+.|+. ++|..+|+...+
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~ 289 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREK------------VPDLLPKVLFGLSWTLCKAGQT--QKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------------CGGGHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh------------CChhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 67778888899999999999999887621000 0011235678888999999999 999999998876
Q ss_pred hcCCccC---HhHHHHHHHHHHhhCC---HHHHHHHHHhCCC
Q 035847 344 EYNMEPA---MEQYCCMVDLLARAGQ---FDDTLNFMKKMPF 379 (523)
Q Consensus 344 ~~g~~p~---~~ty~~li~~~~~~g~---~~~A~~~~~~m~~ 379 (523)
...-.++ ...+..+-..+...|+ +++|..++++.+.
T Consensus 290 ~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~ 331 (378)
T 3q15_A 290 HITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL 331 (378)
T ss_dssp HCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC
Confidence 5222122 3456666667778888 9999999998643
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.19 E-value=4.5e-05 Score=72.59 Aligned_cols=209 Identities=7% Similarity=-0.052 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNS 189 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~ 189 (523)
+++|.+.+... ...|...|++++|...|+++ ..++. +. |-.++ ..+|+.
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a-----------l~~~~---~~-~~~~~~a~~~~~ 82 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA-----------ADYQK---KA-GNEDEAGNTYVE 82 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH-----------HHHHH---HT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH-----------HHHHH---Hh-CCHHHHHHHHHH
Confidence 66666666654 44677888999998888871 22221 11 32222 568999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcC--
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTD-- 257 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g-- 257 (523)
+-..|.+.|++++|...|+...+ .+ ..+|+.+-. .|.+. |++++|+..|++..+..
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~------------~~~~~lg~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE------------ILENDLHDYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------HHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999999988876542 12 246777777 88886 99999999999877631
Q ss_pred --CCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHHHHHHHHHhcCCCchHH
Q 035847 258 --MQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWNSLIDMYGRCGAIQKNE 333 (523)
Q Consensus 258 --~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n~li~~~~~~g~~~~~~ 333 (523)
-.+. ..++..+-..+.+.|++++|...++...+........ ... ...|..+..+|...|+. ++
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~--~~ 217 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS-----------QWSLKDYFLKKGLCQLAATDA--VA 217 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT-----------GGGHHHHHHHHHHHHHHTTCH--HH
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc-----------cHHHHHHHHHHHHHHHHcCCH--HH
Confidence 1111 3568888889999999999999999998753221100 000 01567788889999999 99
Q ss_pred HHHHHHHhHHhcCCccCHh------HHHHHHHHHH--hhCCHHHHHHHHHhC
Q 035847 334 GWRYFEMMKKEYNMEPAME------QYCCMVDLLA--RAGQFDDTLNFMKKM 377 (523)
Q Consensus 334 a~~~~~~m~~~~g~~p~~~------ty~~li~~~~--~~g~~~~A~~~~~~m 377 (523)
|...|++..+ +.|+.. .+..++.++. ..+++++|+..++++
T Consensus 218 A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 218 AARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999998864 455522 3444556664 467789999988776
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.12 E-value=1.7e-05 Score=75.37 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=111.3
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHc----c-------HHHHhhccCChHHHHHHHHHHHHhcCCC-----Cce
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE----G-------VYKACSELKDHRVGKDVYDYMISIKFEG-----NAC 131 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-------ll~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~ 131 (523)
++..++..+-.++...|++++|++++.+-... + .+..+.+.|+.+.|...+..|.+. .| +..
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~ 175 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNE 175 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchH
Confidence 34555567788888999999999999887332 2 777788899999999999999775 56 345
Q ss_pred eHhHHHHH--HH--hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 035847 132 VKRPVLDM--FI--KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 132 ~~~~li~~--~~--~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
+...|..+ .. ..++..+|..+|++ +.. -.|+..+...++.++.+.|++++|++.+
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~E-------------------l~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEE-------------------LSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHH-------------------HHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHH-------------------HHH--hCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555 22 23489999999999 544 2354344455556899999999999999
Q ss_pred hcCCC------------C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 208 SKIKQ------------K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 208 ~~m~~------------~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
+.+.+ | |..+.-.+|. .....|+ +|.++++++++. .|+...
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~------------l~~~lgk--~a~~l~~qL~~~--~P~hp~ 288 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQIT------------LALMQGL--DTEDLTNQLVKL--DHEHAF 288 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHH------------HHHHTTC--TTHHHHHHHHHT--TCCCHH
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHH------------HHHHhCh--HHHHHHHHHHHh--CCCChH
Confidence 86533 2 4456634444 3334565 889999999884 465443
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.10 E-value=7.1e-05 Score=71.03 Aligned_cols=168 Identities=10% Similarity=-0.038 Sum_probs=120.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-----HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-----~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.++..+...+-.+|...|++++|.+++..-..+ +...+-.++. .+.+.|+++.|.+.+++|.+
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq------------i~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE------------VALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHh
Confidence 455555568889999999999999999876332 3456777777 88999999999999999987
Q ss_pred cCCCC-----CHHHHHHHHHHhhc--cC--ChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhc
Q 035847 256 TDMQP-----NTISLSGVLAACAQ--VK--GFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRC 326 (523)
Q Consensus 256 ~g~~p-----~~~t~~~ll~a~~~--~g--~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~ 326 (523)
. .| +..+...|..++.. .| +...|..+|+++.+.. |+..+-..++.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~------------------p~~~~~~lLln~~~~~ 224 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF------------------PTWKTQLGLLNLHLQQ 224 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS------------------CSHHHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC------------------CCcccHHHHHHHHHHc
Confidence 4 56 46677777767433 24 8999999999986532 2212334455589999
Q ss_pred CCCchHHHHHHHHHhHHhc----C---CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC
Q 035847 327 GAIQKNEGWRYFEMMKKEY----N---MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA 384 (523)
Q Consensus 327 g~~~~~~a~~~~~~m~~~~----g---~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 384 (523)
|++ ++|.+.++.+.+.+ + ..|+ ..+...+|......|+ +|.++++++. ..|+.+
T Consensus 225 g~~--~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 225 RNI--AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TCH--HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred CCH--HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 999 99999999776532 0 1244 6677677766666776 7788877753 455544
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.10 E-value=0.00029 Score=65.44 Aligned_cols=179 Identities=11% Similarity=-0.002 Sum_probs=118.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
+...+-.+-..+.+.|++++|...|+...+ |+ ...|..+-. .|.+.|++++|+..|++..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~~l~~ 81 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLAR------------AYYQNKEYLLAASEYERFIQI 81 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHH
Confidence 455666777888899999999999998764 43 346667777 888999999999999999885
Q ss_pred CC-CCC-HHHHHHHHHHhhc--------cCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC-CCCcchHHHHHHHHHh
Q 035847 257 DM-QPN-TISLSGVLAACAQ--------VKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL-GTGSFVWNSLIDMYGR 325 (523)
Q Consensus 257 g~-~p~-~~t~~~ll~a~~~--------~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~-~p~~~~~n~li~~~~~ 325 (523)
.. .|+ ...+..+-.++.. .|+.+.|...++.+++..-. +.....++.....+ ..-...+..+-..|..
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~ 160 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYER 160 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 222 3455566667777 89999999999999875311 11111111000000 0000012455778889
Q ss_pred cCCCchHHHHHHHHHhHHhcCCcc-CHhHHHHHHHHHHhh----------CCHHHHHHHHHh
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEP-AMEQYCCMVDLLARA----------GQFDDTLNFMKK 376 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~----------g~~~~A~~~~~~ 376 (523)
.|+. ++|...|+...+.+.-.| ....+..+..+|... |++++|...+++
T Consensus 161 ~g~~--~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 161 RELY--EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp TTCH--HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred ccCH--HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 9999 999999999987632222 235666777777766 666666666555
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.07 E-value=3.7e-05 Score=66.94 Aligned_cols=161 Identities=11% Similarity=0.042 Sum_probs=113.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..+..+-..+.+.|++++|+..|++..+.. +.+...+..+-..|.+.|++++|.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~la~~~~~~g~~~~A~ 60 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDEL--------------------------QSRGDVKLAKADCLLETKQFELAQ 60 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--------------------------HTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 345556667778888888888888776543 446678888999999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHH-HHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDF-YAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYA 226 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~-~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~ 226 (523)
..|++ ... ..|+...+..+... +.+.+...+|...|+... .| +...|..+-.
T Consensus 61 ~~~~~-------------------a~~--~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~--- 116 (176)
T 2r5s_A 61 ELLAT-------------------IPL--EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV--- 116 (176)
T ss_dssp HHHTT-------------------CCG--GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH---
T ss_pred HHHHH-------------------hhh--ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH---
Confidence 99998 221 12233333222111 122233334666666554 34 4677888888
Q ss_pred hcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 227 LGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 227 ~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+.+.|++++|...|++..+....+ +...+..+...+...|+.++|...+...+.
T Consensus 117 ---------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 117 ---------QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 8889999999999999998765433 356788888899999999999998887654
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.02 E-value=8.8e-05 Score=66.60 Aligned_cols=165 Identities=14% Similarity=0.110 Sum_probs=108.5
Q ss_pred HhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHH----------------HHHHHHhcCCchHHHHHH
Q 035847 30 QRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTS----------------MMGMYNVLGYYEEIVNLF 93 (523)
Q Consensus 30 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~ 93 (523)
..+...|+++.|...+....+... + +...|.. +-..|.+.|++++|+..|
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p--~------------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI--D------------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH--H------------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--C------------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345578999999999999887642 1 2233333 455555555555555555
Q ss_pred HHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhh
Q 035847 94 YLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173 (523)
Q Consensus 94 ~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~ 173 (523)
++..+ .. +-+...+..+-..|.+.|++++|...|++
T Consensus 78 ~~al~-------------------------~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~------------------ 113 (208)
T 3urz_A 78 KELLQ-------------------------KA-PNNVDCLEACAEMQVCRGQEKDALRMYEK------------------ 113 (208)
T ss_dssp HHHHH-------------------------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH------------------
T ss_pred HHHHH-------------------------HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------
Confidence 55444 31 44677899999999999999999999999
Q ss_pred hhhcCCCCC-chhHHHHHHHHHHhcCC--hHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH
Q 035847 174 HLKKDDLES-DLLVNNSLMDFYAKCRY--LKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF 250 (523)
Q Consensus 174 ~~~~~g~~~-d~~~~~~li~~~~k~g~--~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf 250 (523)
.-. +.| +..++..+-..|...|. .+.+...++....|+...|...-.|+ ++...|++++|+..|
T Consensus 114 -al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~----------~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 114 -ILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGL----------SKLFTTRYEKARNSL 180 (208)
T ss_dssp -HHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHH----------HHHHHHTHHHHHHHH
T ss_pred -HHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHH----------HHHHccCHHHHHHHH
Confidence 322 234 46678888777766553 45667778777776654432222222 556678999999999
Q ss_pred HHHHhcCCCCCHHHHHH
Q 035847 251 SRMIQTDMQPNTISLSG 267 (523)
Q Consensus 251 ~~M~~~g~~p~~~t~~~ 267 (523)
++..+ +.|+......
T Consensus 181 ~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 181 QKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHTT--TSCCHHHHHH
T ss_pred HHHHH--hCCCHHHHHH
Confidence 99876 5677654433
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.01 E-value=0.00014 Score=78.12 Aligned_cols=163 Identities=8% Similarity=-0.102 Sum_probs=126.0
Q ss_pred cCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------HHH
Q 035847 33 PKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------VYK 103 (523)
Q Consensus 33 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------ll~ 103 (523)
...+++++|...++......+... ......+...|..+-..|.+.|++++|++.|++..+.. +-.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~------~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDAD------GVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccc------ccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 678999999999998872111000 00002367789999999999999999999999988764 556
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD 183 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d 183 (523)
++...|++++|.+.|+..++.. +-+...|..+-..|.+.|++++ ...|++ +++. -..+
T Consensus 476 ~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~------------------al~~--~P~~ 533 (681)
T 2pzi_A 476 AELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQT------------------VWST--NDGV 533 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHH------------------HHHH--CTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHH------------------HHHh--CCch
Confidence 6778899999999999998874 3367788899999999999999 888888 1332 1235
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhhHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KH-LVSWNAMLA 223 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~-~~t~~~li~ 223 (523)
...|..+-.+|.+.|+.++|...|++..+ |+ ...|..+..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAV 576 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHH
Confidence 67889999999999999999999999875 44 456777777
No 96
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.97 E-value=0.00038 Score=62.14 Aligned_cols=159 Identities=15% Similarity=0.039 Sum_probs=117.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
..+..+-..|.+.|++++|...|+....|+...|..+-. .|.+.|++++|++.|++..+.. +.+...
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 73 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGC------------MYTILKNMTEAEKAFTRSINRD-KHLAVA 73 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 345566778889999999999999998888889999988 8899999999999999988753 335678
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhC--CC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQG--LG-TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~--~~-p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
+..+-.++...|+.++|.+.++...+..-......+ ...+ .. .+...|..+-..|...|+. ++|...|+..
T Consensus 74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~a 147 (213)
T 1hh8_A 74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY----KILGLQFKLFACEVLYNIAFMYAKKEEW--KKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC----GGGTBCCEEEHHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH----HHhccccCccchHHHHHHHHHHHHccCH--HHHHHHHHHH
Confidence 888889999999999999999999874211100000 0000 11 1225677888888999999 9999999888
Q ss_pred HHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+ +.|+. ..+..++|...+.+
T Consensus 148 l~---~~p~~-----------~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 148 TS---MKSEP-----------RHSKIDKAMECVWK 168 (213)
T ss_dssp HT---TCCSG-----------GGGHHHHHHHHHHT
T ss_pred HH---cCccc-----------ccchHHHHHHHHHh
Confidence 74 35654 23455666666654
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.97 E-value=0.00013 Score=63.47 Aligned_cols=155 Identities=12% Similarity=-0.071 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
.+..+...+.+.|++++|...|+...+ | +...|..+-. .+.+.|++++|+..|+..... .|+.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~------------~~~~~g~~~~A~~~~~~a~~~--~p~~ 73 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKAD------------CLLETKQFELAQELLATIPLE--YQDN 73 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHH------------HHHHTTCHHHHHHHHTTCCGG--GCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH------------HHHHCCCHHHHHHHHHHhhhc--cCCh
Confidence 345566778899999999999999874 3 5567888888 888999999999999988664 3444
Q ss_pred HHHHHHHHH-hhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 263 ISLSGVLAA-CAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 263 ~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
..+..+... +...+....+.+.++..++.. +.+...+..+-..|...|+. ++|...|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-----------------P~~~~~~~~la~~~~~~g~~--~~A~~~~~~~ 134 (176)
T 2r5s_A 74 SYKSLIAKLELHQQAAESPELKRLEQELAAN-----------------PDNFELACELAVQYNQVGRD--EEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcccH--HHHHHHHHHH
Confidence 332221111 112222334566666666532 12467888899999999999 9999999998
Q ss_pred HHhcCCccC---HhHHHHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKEYNMEPA---MEQYCCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+. .|+ ...+..+...+...|+.++|...+++
T Consensus 135 l~~---~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 135 LKV---NLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HTT---CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHh---CcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 754 454 56888999999999999999988875
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.96 E-value=9.6e-05 Score=70.12 Aligned_cols=156 Identities=10% Similarity=-0.030 Sum_probs=118.4
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+...|+++.|...++...+.. ..+...+..+-..|.+.|++++|+.+|++.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--------------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 44456666677778999999999999988764 2367788899999999999999999999876543
Q ss_pred ---------HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHh
Q 035847 101 ---------VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIH 171 (523)
Q Consensus 101 ---------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ 171 (523)
....+...++.+.|.+.+...++.. +.+...+..+-..|...|++++|...|++
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~---------------- 244 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFG---------------- 244 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH----------------
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHH----------------
Confidence 2233556677777888888887763 44677888899999999999999999988
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 172 PHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 172 ~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
+++...-..+...+..|...|...|+.++|...|++
T Consensus 245 --~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 245 --HLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp --HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred --HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 133201112367888999999999999888877764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.95 E-value=0.00025 Score=67.16 Aligned_cols=167 Identities=6% Similarity=-0.047 Sum_probs=123.2
Q ss_pred CCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 035847 127 EGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 127 ~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~v 206 (523)
+.+...+..+-..+.+.|++++|...|++ .-. --.-+...+..+...|.+.|+.++|...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~-------------------al~-~~P~~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXD-------------------AWQ-LSNQNGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHH-------------------HHH-hCCcchhHHHHHHHHHHHCCCHHHHHHH
Confidence 44455667777888899999999999988 222 1223567888899999999999999999
Q ss_pred HhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHH
Q 035847 207 FSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 207 f~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
++.... |+......... . .+.+.++.++|+..|++..... +.+...+..+-.++...|+.++|...
T Consensus 174 l~~~~~~~p~~~~~~~~~~-~----------~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~ 241 (287)
T 3qou_A 174 LXTIPLQDQDTRYQGLVAQ-I----------ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALEL 241 (287)
T ss_dssp HTTSCGGGCSHHHHHHHHH-H----------HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCchhhcchHHHHHHHH-H----------HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHH
Confidence 998874 65442222221 1 4567788888999998887753 23567777888889999999999999
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhH
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMK 342 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~ 342 (523)
+..+++..-.. .+...+..+...|...|+. ++|...|++-.
T Consensus 242 l~~~l~~~p~~---------------~~~~a~~~l~~~~~~~g~~--~~a~~~~r~al 282 (287)
T 3qou_A 242 LFGHLRXDLTA---------------ADGQTRXTFQEILAALGTG--DALASXYRRQL 282 (287)
T ss_dssp HHHHHHHCTTG---------------GGGHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHhccccc---------------ccchHHHHHHHHHHHcCCC--CcHHHHHHHHH
Confidence 99998753211 1256788899999999999 88888877644
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.94 E-value=0.00014 Score=78.00 Aligned_cols=181 Identities=10% Similarity=-0.005 Sum_probs=142.9
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhh--------cCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK--------KDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~--------~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
...|++++|...|++ .. . ....+...+..+-..|.+.|++++|...|+...+
T Consensus 402 ~~~~~~~~A~~~~~~-------------------al~~~~~~~~~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRA-------------------ARHGALDADGV-DFSESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp TTTCCHHHHHHHHHH-------------------HHTC--------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHH-------------------hhhhccccccc-ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 678899999999988 22 1 2233567888899999999999999999998764
Q ss_pred --C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 213 --K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 213 --~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
| +...|..+-. .|.+.|++++|++.|++..+. .| +...|..+-.++.+.|++++ .+.++..
T Consensus 462 ~~p~~~~a~~~lg~------------~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 462 RVGWRWRLVWYRAV------------AELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HHCCCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred cCcchHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 3 5668888878 888999999999999998874 35 45677888888999999999 9999998
Q ss_pred HHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhC--
Q 035847 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAG-- 365 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g-- 365 (523)
++.. ..+...|..+-..|.+.|+. ++|...|++..+ +.|+ ...|..+..++...|
T Consensus 527 l~~~-----------------P~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~---l~P~~~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 527 WSTN-----------------DGVISAAFGLARARSAEGDR--VGAVRTLDEVPP---TSRHFTTARLTSAVTLLSGRST 584 (681)
T ss_dssp HHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHTSCT---TSTTHHHHHHHHHHHTC-----
T ss_pred HHhC-----------------CchHHHHHHHHHHHHHcCCH--HHHHHHHHhhcc---cCcccHHHHHHHHHHHHccCCC
Confidence 8743 22456889999999999999 999999998864 4677 567777777776644
Q ss_pred ------CHHHHHHHHHhCC
Q 035847 366 ------QFDDTLNFMKKMP 378 (523)
Q Consensus 366 ------~~~~A~~~~~~m~ 378 (523)
++++|.+.+..+.
T Consensus 585 ~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 585 SEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp --CCHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHhhCC
Confidence 4777888888774
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.92 E-value=0.00016 Score=67.29 Aligned_cols=166 Identities=11% Similarity=0.025 Sum_probs=119.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g 144 (523)
+...+-.+-..+.+.|++++|+..|++.... .|+ ..++..+-..|.+.|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---------------------------~p~~~~~~~a~~~lg~~~~~~~ 66 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY---------------------------GRTHEWAADAQFYLARAYYQNK 66 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG---------------------------CSCSTTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---------------------------CCCCcchHHHHHHHHHHHHHhC
Confidence 4555666667777888888888888887664 243 456777888999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcC-CCCCchhHHHHHHHHHHh--------cCChHHHHHHHhcCCC--C
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAK--------CRYLKVAHCKFSKIKQ--K 213 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~d~~~~~~li~~~~k--------~g~~~~A~~vf~~m~~--~ 213 (523)
++++|...|++ +++.. +-.....++..+-..|.+ .|+.++|...|+...+ |
T Consensus 67 ~~~~A~~~~~~------------------~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 67 EYLLAASEYER------------------FIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp CHHHHHHHHHH------------------HHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHH------------------HHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc
Confidence 99999999998 12220 111234567777788888 9999999999998753 4
Q ss_pred Ch-hhHH-----------------HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC--CHHHHHHHHHHhh
Q 035847 214 HL-VSWN-----------------AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP--NTISLSGVLAACA 273 (523)
Q Consensus 214 ~~-~t~~-----------------~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~ 273 (523)
+. ..+. .+-. .|.+.|++++|+..|++..+..... ....+..+..++.
T Consensus 129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 196 (261)
T 3qky_A 129 NHELVDDATQKIRELRAKLARKQYEAAR------------LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 32 3332 2344 7889999999999999998753221 2345666767777
Q ss_pred cc----------CChhHHHHHHHHHHHh
Q 035847 274 QV----------KGFKLGKEIHGYVLRH 291 (523)
Q Consensus 274 ~~----------g~~~~a~~i~~~~~~~ 291 (523)
.. |++++|...+..+++.
T Consensus 197 ~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 197 AYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhcccchHHHHHHHHHHHHHH
Confidence 66 8889999999988874
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.91 E-value=8.4e-05 Score=71.23 Aligned_cols=199 Identities=9% Similarity=-0.052 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|++++|..++++..+..- ... +...+++++|...|.+ ....+...|+++.|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--------------~~~---------~~~~~~~~~A~~~~~~-----a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--------------TSF---------MKWKPDYDSAASEYAK-----AAVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCS---------SSCSCCHHHHHHHHHH-----HHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--------------ccc---------cCCCCCHHHHHHHHHH-----HHHHHHHcCCHHHH
Confidence 4567788888777665421 110 0113566666666655 23345555666666
Q ss_pred HHHHHHHHHhcCCC-----CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHH
Q 035847 115 KDVYDYMISIKFEG-----NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNN 188 (523)
Q Consensus 115 ~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~ 188 (523)
.+.+....+..... -..+|+.+...|.+.|++++|...|+++ .+++. +. |-.. -..+++
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A-----------l~l~~---~~-g~~~~~a~~~~ 120 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA-----------SVMYV---EN-GTPDTAAMALD 120 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHH-----------HHHHH---TT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH-----------HHHHH---Hc-CCHHHHHHHHH
Confidence 66666555432111 1346778888999999999999999882 22221 11 2111 245778
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc---
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQ-----KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--- 256 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~-----~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--- 256 (523)
.+-..|.+ |++++|...|++..+ .+ ..+|+.+-. .|.+.|++++|++.|++....
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR------------LLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHH
Confidence 88888888 999999998886542 11 346777777 888999999999999988762
Q ss_pred -CCCCCH-HHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 257 -DMQPNT-ISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 257 -g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+..++. .++..+..++...|+.+.|...++...
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222222 255556666666788888888887776
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.90 E-value=8.7e-05 Score=77.78 Aligned_cols=130 Identities=8% Similarity=-0.074 Sum_probs=74.3
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+...+..+-..|.+.|++++|...|++ .-. --..+...+..+-..|.+.|+.++|.+.|+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------------al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQR-------------------GLA-LHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHH-------------------HHT-TSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566666666666666666666666 211 111234556666666666666666666666
Q ss_pred cCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc---CChhHHH
Q 035847 209 KIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV---KGFKLGK 282 (523)
Q Consensus 209 ~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~---g~~~~a~ 282 (523)
+..+ | +...|..+-. .|.+.|++++|.+.|++..+.. .-+...+..+..++... |+.++|.
T Consensus 82 ~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGH------------ALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHhcCCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 5432 2 3445555555 6666666666666666665532 11344555555566666 6666666
Q ss_pred HHHHHHHHh
Q 035847 283 EIHGYVLRH 291 (523)
Q Consensus 283 ~i~~~~~~~ 291 (523)
+.++...+.
T Consensus 149 ~~~~~al~~ 157 (568)
T 2vsy_A 149 AQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666554
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.89 E-value=5.7e-05 Score=79.16 Aligned_cols=150 Identities=6% Similarity=-0.093 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|++++|...+++..+.. ..+...|..+-..|.+.|++++|++.|++..+..
T Consensus 2 ~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 53 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--------------PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------------- 53 (568)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------------
T ss_pred CccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 356777777777766542 2356788888888999999999999998876643
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
+.+..++..+-..|.+.|++++|...|+++ ++. -..+...+..+-..|
T Consensus 54 ------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 54 ------------PGHPEAVARLGRVRWTQQRHAEAAVLLQQA------------------SDA--APEHPGIALWLGHAL 101 (568)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------Hhc--CCCCHHHHHHHHHHH
Confidence 234556666666777777777777777661 111 122355666666777
Q ss_pred HhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhcc---CCchHHHHHHHHHHhc
Q 035847 195 AKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQY---GDGETALEFFSRMIQT 256 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~---g~~~~A~~lf~~M~~~ 256 (523)
.+.|+.++|.+.|++..+ | +...|..+.. .+.+. |+.++|.+.|++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~------------~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN------------WRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhhccccHHHHHHHHHHHHhc
Confidence 777777777777665432 2 3445666666 55556 6777777777766654
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.89 E-value=0.00024 Score=64.46 Aligned_cols=153 Identities=9% Similarity=0.003 Sum_probs=109.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcCCCCce----eH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKFEGNAC----VK 133 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~ 133 (523)
...+-.+-..+.+.|++++|+..|+++.... +..++.+.|+++.|...++.+++.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 3445556677889999999999999987532 5667788999999999999998763 4322 23
Q ss_pred hHHHHHHHh------------------cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHH-------
Q 035847 134 RPVLDMFIK------------------CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVN------- 187 (523)
Q Consensus 134 ~~li~~~~~------------------~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~------- 187 (523)
-.+-..|.+ .|+.++|...|++ +++. .|+ ..++
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------------~l~~---~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK------------------LVRG---YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHH------------------HHTT---CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH------------------HHHH---CcCChhHHHHHHHHH
Confidence 333333433 4677788888777 2222 122 1111
Q ss_pred ----------HHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHH
Q 035847 188 ----------NSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFS 251 (523)
Q Consensus 188 ----------~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~ 251 (523)
-.+-..|.+.|+.++|...|+.+.+ |+. ..+..+.. +|.+.|+.++|.+.|+
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~------------~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN------------AYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH------------HHHHcCCcHHHHHHHH
Confidence 2455678899999999999998763 543 35667777 8899999999999999
Q ss_pred HHHhcC
Q 035847 252 RMIQTD 257 (523)
Q Consensus 252 ~M~~~g 257 (523)
.+...+
T Consensus 209 ~l~~~~ 214 (225)
T 2yhc_A 209 IIAANS 214 (225)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 988764
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.85 E-value=0.00034 Score=62.39 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=102.9
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..+-..|.+.|++++|...|++ .+.|+..++..+...|.+.|++++|...|+...+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~-----------------------a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSA-----------------------VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 65 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-----------------------SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH-----------------------HcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566778899999999999998 3566888999999999999999999999987642
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC--------------CCCC-HHHHHHHHHHhhc
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--------------MQPN-TISLSGVLAACAQ 274 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g--------------~~p~-~~t~~~ll~a~~~ 274 (523)
.+...|..+-. .|.+.|++++|++.|++..+.. ..|+ ...+..+-.++..
T Consensus 66 ~~~~~~~~~~~lg~------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 66 RDKHLAVAYFQRGM------------LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHH------------HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 45668888888 8899999999999999998742 1222 2667788888999
Q ss_pred cCChhHHHHHHHHHHHh
Q 035847 275 VKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 275 ~g~~~~a~~i~~~~~~~ 291 (523)
.|+.+.|.+.++...+.
T Consensus 134 ~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 99999999999998874
No 107
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.82 E-value=0.00094 Score=70.94 Aligned_cols=216 Identities=10% Similarity=-0.005 Sum_probs=143.1
Q ss_pred ccCChHHHH-HHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC---
Q 035847 107 ELKDHRVGK-DVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--- 182 (523)
Q Consensus 107 ~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--- 182 (523)
..|+.+.|. +++++.+.. ++.+...|-..+...-+.|+++.|..+|+++. .....-+... +. .. |
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l-------~~l~~~~~~~-~~-~~-p~~~ 423 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI-------DRIHLDLAAL-ME-DD-PTNE 423 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHHHHHHHHH-HH-HS-TTCH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-------HHHHHHhhhh-hh-cc-Ccch
Confidence 345666675 777777654 34566677888899999999999999999820 0000000000 00 01 2
Q ss_pred ---------chhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhhHHHHHHhhhhcCCccccchhhc-cCCchHHHHHHH
Q 035847 183 ---------DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK-HLVSWNAMLAGYALGGFREEITGFTQ-YGDGETALEFFS 251 (523)
Q Consensus 183 ---------d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~-~~~t~~~li~~~~~~g~~~~i~~~~~-~g~~~~A~~lf~ 251 (523)
...+|-..+...-+.|+++.|+.+|....+. ...+|...+. ++. .-.+ .++.+.|..+|+
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~-~A~--------lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE-NAY--------IEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHH-HHH--------HHHTTTSCCHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHH-HHH--------HHHHhCCCHHHHHHHHH
Confidence 2447888888888999999999999886432 2222222221 000 1122 355899999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 252 RMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 252 ~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
...+. ..-+...+...++-....|+.+.|+.+|+..++....+.. ....|...+.-=.+.|..
T Consensus 495 ~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~--------------~~~lw~~~~~fE~~~G~~-- 557 (679)
T 4e6h_A 495 LGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL--------------LKMIFQKVIFFESKVGSL-- 557 (679)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH--------------HHHHHHHHHHHHHHTCCS--
T ss_pred HHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH--------------HHHHHHHHHHHHHHcCCH--
Confidence 98875 3334555667777777789999999999998775322111 346788899999999999
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~ 362 (523)
+.+..+.++|.+. .|+......+++-|.
T Consensus 558 ~~~~~v~~R~~~~---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 558 NSVRTLEKRFFEK---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHHHHHHH---STTCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh---CCCCcHHHHHHHHhc
Confidence 9999999999876 566655555555553
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.80 E-value=0.00086 Score=60.23 Aligned_cols=151 Identities=8% Similarity=-0.088 Sum_probs=106.7
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC----CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG----RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
.+...++.++|.+.|....+.| +...+..|-.+|.. + +.++|...|+++ .+. |
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A------------------~~~-g 83 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA------------------VEA-G 83 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH------------------HHT-T
T ss_pred HHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH------------------HHC-C
Confidence 3344566667777776666654 45667777777777 6 899999999881 122 2
Q ss_pred CCCchhHHHHHHHHHHh----cCChHHHHHHHhcCCCCC-----hhhHHHHHHhhhhcCCccccchhhc----cCCchHH
Q 035847 180 LESDLLVNNSLMDFYAK----CRYLKVAHCKFSKIKQKH-----LVSWNAMLAGYALGGFREEITGFTQ----YGDGETA 246 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k----~g~~~~A~~vf~~m~~~~-----~~t~~~li~~~~~~g~~~~i~~~~~----~g~~~~A 246 (523)
+...+..|-..|.. .++.++|...|+...+.+ ..+++.|-. .|.. .+++++|
T Consensus 84 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~------------~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 84 ---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL------------IYASGVHGPEDDVKA 148 (212)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH------------HHHHTSSSSCCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH------------HHHcCCCCCCCHHHH
Confidence 45567777777776 789999999998876533 567777777 5555 7789999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhhcc-C-----ChhHHHHHHHHHHHhcCC
Q 035847 247 LEFFSRMIQTDMQPNTISLSGVLAACAQV-K-----GFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 247 ~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~i~~~~~~~g~~ 294 (523)
+..|++-.+. .++...+..|-..|... | +.++|.+.++...+.|..
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 9999998876 22334555555555432 3 899999999999888753
No 109
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.78 E-value=0.0001 Score=59.01 Aligned_cols=96 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
..+|..+...+.+.|++++|++.|+++.... +.+..++..+...|.+.|++++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A 62 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDEA 62 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------cCcHHHHHHHHHHHHHhCCHHHH
Confidence 5678888888888999999999888876543 34566788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..+|++ ... ....+..++..+...|.+.|+.++|...|+.+.
T Consensus 63 ~~~~~~-------------------~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 63 IEYYQK-------------------ALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-------------------HHH-hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999988 322 123456788888889999999999999988764
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.78 E-value=0.00063 Score=61.65 Aligned_cols=185 Identities=11% Similarity=-0.032 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL----VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~----~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+.. .|.+.|++++|+..|++..+...
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~~l~~~P 72 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIY------------AYYKNADLPLAQAAIDRFIRLNP 72 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------------HHHhcCCHHHHHHHHHHHHHHCc
Confidence 3455566778899999999999998753 432 35666777 88899999999999999987432
Q ss_pred C-CCH-HHHHHHHHHhh------------------ccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCC-cchHH
Q 035847 259 Q-PNT-ISLSGVLAACA------------------QVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTG-SFVWN 317 (523)
Q Consensus 259 ~-p~~-~t~~~ll~a~~------------------~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~-~~~~n 317 (523)
. |.. ..+-.+-.++. ..|+.++|...++.+++.--. +.....++.....+... ....-
T Consensus 73 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 73 THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 2 111 12222222332 357889999999888764211 11111111110000000 00112
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCC-CCCCCC
Q 035847 318 SLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMP-FEPSSA 384 (523)
Q Consensus 318 ~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~ 384 (523)
.+-..|.+.|+. ++|...|+.+.+.+.-.|. ...+..+..++.+.|+.++|.+.++.+. ..|+.+
T Consensus 152 ~~a~~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAW--VAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCH--HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcH--HHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 345678899999 9999999999876322221 2578889999999999999999988753 344443
No 111
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.75 E-value=0.00032 Score=55.97 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=79.8
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
..++..+...+...|+++.|...+..+.+.. ..+..+|..+...+.+.|++++|+..|+++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 4567778888889999999999999998764 2367789999999999999999999998877643
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+..++..+...|.+.|++++|...|++
T Consensus 74 -------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 74 -------------------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44667888899999999999999999988
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.75 E-value=0.0048 Score=58.74 Aligned_cols=210 Identities=9% Similarity=-0.006 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcC--CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 113 VGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCG--RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
+|.++.+.++.. .|+ ..+||.--..+...| ++++++.+++. +++. ..-+..+|+.
T Consensus 51 ~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~------------------~L~~--nPk~y~aW~~ 108 (306)
T 3dra_A 51 RALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEE------------------IALD--NEKNYQIWNY 108 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHH------------------HHHH--CTTCCHHHHH
T ss_pred HHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHH------------------HHHH--CcccHHHHHH
Confidence 344444444333 454 456777777777777 89999999988 1222 2234445555
Q ss_pred HHHHH----Hhc---CChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCch--HHHHHHHHHHhcC
Q 035847 190 LMDFY----AKC---RYLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGE--TALEFFSRMIQTD 257 (523)
Q Consensus 190 li~~~----~k~---g~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~--~A~~lf~~M~~~g 257 (523)
--..+ .+. ++++++..+++.+.+ +|-.+|+---- .+.+.|.++ ++++.++.+.+..
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~------------vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKW------------LVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhcccChHHHHHHHHHHHHhC
Confidence 44444 445 789999999998864 56677777655 555667777 9999999999865
Q ss_pred CCCCHHHHHHHHHHhhccCC------hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCch
Q 035847 258 MQPNTISLSGVLAACAQVKG------FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQK 331 (523)
Q Consensus 258 ~~p~~~t~~~ll~a~~~~g~------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~ 331 (523)
.. |...|+---....+.+. ++++.+....+++.. +-|...|+-+-..+.+.|+.
T Consensus 177 ~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-----------------p~n~SaW~y~~~ll~~~~~~-- 236 (306)
T 3dra_A 177 LK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-----------------PQNPSTWNYLLGIHERFDRS-- 236 (306)
T ss_dssp TT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-----------------SSCHHHHHHHHHHHHHTTCC--
T ss_pred CC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-----------------CCCccHHHHHHHHHHhcCCC--
Confidence 43 67777765555566665 677777777776643 33677899988888888886
Q ss_pred HH-HHHHHHHhHHhcC--CccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 332 NE-GWRYFEMMKKEYN--MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 332 ~~-a~~~~~~m~~~~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+ ...+.+...+. + -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus 237 ~~~~~~~~~~~~~~-~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 237 ITQLEEFSLQFVDL-EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp GGGGHHHHHTTEEG-GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 44 44566655432 2 1345788899999999999999999988886
No 113
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.75 E-value=0.0011 Score=61.88 Aligned_cols=196 Identities=8% Similarity=-0.070 Sum_probs=133.8
Q ss_pred CCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHH-------HHHHhcCCchHHHHHHHHhhHccHHHHhh
Q 035847 34 KLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMM-------GMYNVLGYYEEIVNLFYLLIDEGVYKACS 106 (523)
Q Consensus 34 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~l~~~m~~~gll~~~~ 106 (523)
..++...|.+.|....+... .....|+.++ ..+.+.++..+++..+..-..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--------------~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~-------- 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--------------SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ-------- 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--------
T ss_pred cCCCHHHHHHHHHHHHHhCh--------------hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 57899999999999998742 3467888774 444444444444444433222
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCc----------------------eeHhHHHHHHHhcCCHHHHHHHhhhccccccCch
Q 035847 107 ELKDHRVGKDVYDYMISIKFEGNA----------------------CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLL 164 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g~~p~~----------------------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~ 164 (523)
+.|+. ..+-.+...+...|++++|.++|+.
T Consensus 76 -------------------l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~--------- 127 (282)
T 4f3v_A 76 -------------------ISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEA--------- 127 (282)
T ss_dssp -------------------CCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTS---------
T ss_pred -------------------CChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHH---------
Confidence 22221 1223466778899999999999998
Q ss_pred hhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh----hhHHHHHHhhhhcCCccccchhhc
Q 035847 165 KHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHL----VSWNAMLAGYALGGFREEITGFTQ 239 (523)
Q Consensus 165 ~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~----~t~~~li~~~~~~g~~~~i~~~~~ 239 (523)
... + .|+....-.+-..+.+.+++++|...|+...+ ++. ..+..+=. ++.+
T Consensus 128 ----------~~~-~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~------------al~~ 183 (282)
T 4f3v_A 128 ----------APV-A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV------------AAAN 183 (282)
T ss_dssp ----------SCC-T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH------------HHHH
T ss_pred ----------HHh-c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH------------HHHH
Confidence 544 2 35443666667789999999999999986654 222 24555556 8889
Q ss_pred cCCchHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 240 YGDGETALEFFSRMIQTDMQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 240 ~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
.|++++|++.|++.......|. .......-.++.+.|+.++|..+++.+....-. ..++.+|.+
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 9999999999999875443364 224444555788899999999999999886433 445555443
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.73 E-value=0.001 Score=63.05 Aligned_cols=158 Identities=9% Similarity=0.011 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN---- 129 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~---- 129 (523)
...+...+..+...|++++|++.+.+..... +...+...|+.+.|...+....+.... .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4566677888999999999999998665432 334456778999999999988764321 12
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhcCChHHHHHHH
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKCRYLKVAHCKF 207 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~g~~~~A~~vf 207 (523)
..+|+.+-..|...|++++|...|+++ .++. +..+-.+ ...+++.+...|.+.|++++|...|
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~ka-----------l~~~----~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQI-----------LKQL----EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH----HHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHH----HhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 347888999999999999999999981 1111 1111122 2358899999999999999999999
Q ss_pred hcCCC--CC-------hhhHHHHHHhhhhcCCccccchhhccCCchHH-HHHHHHHH
Q 035847 208 SKIKQ--KH-------LVSWNAMLAGYALGGFREEITGFTQYGDGETA-LEFFSRMI 254 (523)
Q Consensus 208 ~~m~~--~~-------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A-~~lf~~M~ 254 (523)
++..+ ++ ..+|..+-. .|.+.|++++| ...|++..
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~------------~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGE------------CLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH------------HHHHcCCcHHHHHHHHHHHH
Confidence 86532 11 346777777 88889999999 77677654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.73 E-value=0.0007 Score=64.70 Aligned_cols=212 Identities=8% Similarity=-0.020 Sum_probs=132.5
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|.+++++-.+..- .. .+...++++.|...+.... ..|..
T Consensus 7 ~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a~----------------------------~~~~~ 48 (307)
T 2ifu_A 7 ISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKAA----------------------------VAFKN 48 (307)
T ss_dssp HHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHHH----------------------------HHHHH
Confidence 5678888887654311 11 1222578888887766542 33444
Q ss_pred cCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC---C--CceeHhHHHHHHHh
Q 035847 83 LGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE---G--NACVKRPVLDMFIK 142 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~---p--~~~~~~~li~~~~~ 142 (523)
.|++++|++.|.+..... +...+...|++++|.+.+...++.-.. | -..+++.+-..|.+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 455555555554433211 445566677888887777776654211 1 13567778888888
Q ss_pred cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC--
Q 035847 143 CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KH-- 214 (523)
Q Consensus 143 ~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~-- 214 (523)
|++++|...|+++ ..++.. . +-.+ ...+++.+-..|.+.|++++|...|++..+ ++
T Consensus 129 -g~~~~A~~~~~~A-----------l~~~~~---~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 129 -LDLSKAVHLYQQA-----------AAVFEN---E-ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp -TCHHHHHHHHHHH-----------HHHHHH---T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -CCHHHHHHHHHHH-----------HHHHHh---C-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 9999999999982 122211 1 2111 246788899999999999999999987643 22
Q ss_pred --hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC------HHHHHHHHHHhhccCChhHHHHH
Q 035847 215 --LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN------TISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 215 --~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~------~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
...|..+.. .+...|++++|+..|++.. . .|+ ..+...++.++ ..++.+...++
T Consensus 193 ~~~~~~~~~g~------------~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 193 TCYKKCIAQVL------------VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 124555555 6677899999999999987 3 342 12344555555 56777666664
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.73 E-value=0.00018 Score=64.54 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=85.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-- 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-- 212 (523)
.+-..|.+.|++++|...|+++ ++. -+-+...+..+-..|.+.|+.++|...|+...+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKEL------------------LQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHH------------------HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3888899999999999999981 222 123577899999999999999999999998753
Q ss_pred C-ChhhHHHHHHhhhhcCCccccchhhccCC--chHHHHHHHHHHhcCCCCCHH--HHHHHHHHhhccCChhHHHHHHHH
Q 035847 213 K-HLVSWNAMLAGYALGGFREEITGFTQYGD--GETALEFFSRMIQTDMQPNTI--SLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 213 ~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~--~~~A~~lf~~M~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
| +..+|..+-. .|...|+ ...+...|+... .|+.. .+...-.++...|+.++|...++.
T Consensus 119 P~~~~a~~~lg~------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 119 ADNLAANIFLGN------------YYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp TTCHHHHHHHHH------------HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4 5567888877 5544443 344555565543 34433 333334455567899999999998
Q ss_pred HHHh
Q 035847 288 VLRH 291 (523)
Q Consensus 288 ~~~~ 291 (523)
.++.
T Consensus 183 al~l 186 (208)
T 3urz_A 183 VILR 186 (208)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 8763
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.71 E-value=0.00089 Score=63.39 Aligned_cols=157 Identities=9% Similarity=0.006 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CCc----ee
Q 035847 73 WTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GNA----CV 132 (523)
Q Consensus 73 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~ 132 (523)
+...+..+...|++++|.+++++..... +...+...++.+.|...+....+.... ++. .+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778899999999999999876532 333445667999999999999985433 222 26
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
++.+-..|...|+++.|...|+++ .++.. +..+..+. ..+|+.+...|.+.|+.++|...++...
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~a-----------l~~~~---~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQI-----------LKQLE---ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHH---HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHH---hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999991 11111 11022222 3488899999999999999999988654
Q ss_pred C--------CC-hhhHHHHHHhhhhcCCccccchhhccCC-chHHHHHHHHHHh
Q 035847 212 Q--------KH-LVSWNAMLAGYALGGFREEITGFTQYGD-GETALEFFSRMIQ 255 (523)
Q Consensus 212 ~--------~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~-~~~A~~lf~~M~~ 255 (523)
+ +. ..+|..+-. .|.+.|+ .++|.+.|++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~------------~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGE------------CLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHH------------HHHHhCCcHHHHHHHHHHHHH
Confidence 2 11 346777777 7778885 5899988887653
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.69 E-value=0.00023 Score=60.49 Aligned_cols=129 Identities=9% Similarity=-0.067 Sum_probs=91.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|..+-..+...|++++|+..|.+..... +.+..++..+...|.+.|++++|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A~ 67 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------PSNAIYYGNRSLAYLRTECYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHcCCHHHHH
Confidence 456666666667777777777776655432 346778888889999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhh
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYAL 227 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~ 227 (523)
..|++ ... ....+..++..+...|.+.|+.++|...|+...+ | +...+..+..+.
T Consensus 68 ~~~~~-------------------a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~-- 125 (166)
T 1a17_A 68 GDATR-------------------AIE-LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN-- 125 (166)
T ss_dssp HHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH--
T ss_pred HHHHH-------------------HHH-hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Confidence 99988 222 1233567888888999999999999999987653 3 344453333310
Q ss_pred cCCccccchhhccCCchHHHHHHHHHHh
Q 035847 228 GGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 228 ~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+.+.|++++|++.+.....
T Consensus 126 --------~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 126 --------KIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHcccchHH
Confidence 46677889999988876543
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.69 E-value=0.0024 Score=60.36 Aligned_cols=165 Identities=10% Similarity=-0.028 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCC--C---Ch---h-hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIKQ--K---HL---V-SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~~--~---~~---~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
+...+..+.+.|++++|..+++...+ + +. . .+..+.. .+...|++++|+..|++.....
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAA------------YVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH------------HHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHH------------HHHcccCHHHHHHHHHHHHHHh
Confidence 33447788999999999999987643 1 11 1 2333544 6677889999999999998743
Q ss_pred CC-CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHh--cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCc
Q 035847 258 MQ-PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRH--HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQ 330 (523)
Q Consensus 258 ~~-p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~ 330 (523)
.. ++ ..+|+.+-..|...|+.+.|...+..+.+. ....+. .....+|+.+-..|.+.|+.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~~nlg~~y~~~~~y- 212 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE------------EFDVKVRYNHAKALYLDSRY- 212 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH------------HHHHHHHHHHHHHHHHTTCH-
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch------------hHHHHHHHHHHHHHHHHhHH-
Confidence 22 23 236888888999999999999999998852 110111 01224788899999999999
Q ss_pred hHHHHHHHHHhHHh---cCCccC-HhHHHHHHHHHHhhCC-HHHHHHHHHhC
Q 035847 331 KNEGWRYFEMMKKE---YNMEPA-MEQYCCMVDLLARAGQ-FDDTLNFMKKM 377 (523)
Q Consensus 331 ~~~a~~~~~~m~~~---~g~~p~-~~ty~~li~~~~~~g~-~~~A~~~~~~m 377 (523)
++|..+++...+. .+..+. ...|..+-..+.+.|+ +++|.+.+++.
T Consensus 213 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 213 -EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp -HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9999999877642 133333 5788889999999994 68888887763
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.67 E-value=0.00055 Score=60.35 Aligned_cols=157 Identities=7% Similarity=-0.076 Sum_probs=108.4
Q ss_pred HhcCChHHHHH---HHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh----cCCCC-CHHHHH
Q 035847 195 AKCRYLKVAHC---KFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ----TDMQP-NTISLS 266 (523)
Q Consensus 195 ~k~g~~~~A~~---vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~----~g~~p-~~~t~~ 266 (523)
...|++++|.+ ++..-+.....+|+.+-. .+...|++++|+..|++... .+..| ...++.
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 70 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGY------------VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALH 70 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45788999999 665533334557777777 88889999999999988765 22222 345677
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhc--CCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 267 GVLAACAQVKGFKLGKEIHGYVLRHH--IQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 267 ~ll~a~~~~g~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+-..+...|++++|.+.+....+.- ...+.. .....++.+-..|...|++ ++|...|++..+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~ 136 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPL------------AASANAYEVATVALHFGDL--AGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH------------HHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH------------HHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH
Confidence 77778888999999999988876631 110000 0124577888899999999 9999999887643
Q ss_pred cCCccC----HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 345 YNMEPA----MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 345 ~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..-.++ ..++..+...+...|++++|.+.+++.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 111112 345677888899999999999888763
No 121
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.65 E-value=0.00046 Score=60.87 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 035847 141 IKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-------- 212 (523)
Q Consensus 141 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-------- 212 (523)
...|++++|.+.++. ... .......+++.+-..|...|++++|...|++..+
T Consensus 3 ~~~g~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 62 (203)
T 3gw4_A 3 FEAHDYALAERQAQA-------------------LLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62 (203)
T ss_dssp ----CHHHHHHHHHH-------------------HHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred cccccHHHHHHHHHH-------------------hcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc
Confidence 356778888874444 222 2234677889999999999999999998887542
Q ss_pred -CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc----CCCC--CHHHHHHHHHHhhccCChhHHHHHH
Q 035847 213 -KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT----DMQP--NTISLSGVLAACAQVKGFKLGKEIH 285 (523)
Q Consensus 213 -~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~i~ 285 (523)
....+++.+-. .|...|++++|.+.|++..+. +-.| ....+..+-..+...|++++|...+
T Consensus 63 ~~~~~~~~~l~~------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 63 TAEHRALHQVGM------------VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp HHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 12245666766 888999999999999987653 2122 2345677777888899999999999
Q ss_pred HHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 286 GYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 286 ~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
....+..-..+.. ..-..++..+-..|...|+. ++|...|++..+.
T Consensus 131 ~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 176 (203)
T 3gw4_A 131 EKSLVYAQQADDQ-----------VAIACAFRGLGDLAQQEKNL--LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCH-----------HHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccch-----------HHHHHHHHHHHHHHHHCcCH--HHHHHHHHHHHHH
Confidence 8887531111000 00123467788899999999 9999998877653
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.61 E-value=0.0014 Score=58.74 Aligned_cols=155 Identities=9% Similarity=-0.010 Sum_probs=119.8
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc-------HHHHhhccC----ChHHHHHHHHHHHHhcCCCCceeHhHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------VYKACSELK----DHRVGKDVYDYMISIKFEGNACVKRPVL 137 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li 137 (523)
+..++..|-..|...+++++|+..|++..+.| +-..+.. + +.++|.+.+....+.| +...+..|-
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 67788888888989999999999999988877 4444445 6 8999999999998765 556777888
Q ss_pred HHHHh----cCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHh----cCChHHHHHHHh
Q 035847 138 DMFIK----CGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAK----CRYLKVAHCKFS 208 (523)
Q Consensus 138 ~~~~~----~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k----~g~~~~A~~vf~ 208 (523)
.+|.. .+++++|...|+++ .+. |.. .+...+..|-.+|.. .++.++|...|+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A------------------~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDA------------------ARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHH------------------TSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHH------------------HHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88887 88999999999982 222 221 126778888888888 789999999998
Q ss_pred cCCC--CChhhHHHHHHhhhhcCCccccchhhcc------CCchHHHHHHHHHHhcCC
Q 035847 209 KIKQ--KHLVSWNAMLAGYALGGFREEITGFTQY------GDGETALEFFSRMIQTDM 258 (523)
Q Consensus 209 ~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~------g~~~~A~~lf~~M~~~g~ 258 (523)
...+ .+..++..|-. .|.+. .+.++|+..|+.-.+.|.
T Consensus 154 ~A~~~~~~~~a~~~Lg~------------~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGM------------MFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHH------------HHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHH------------HHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7643 46667777766 44432 289999999999888774
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.59 E-value=0.0013 Score=55.70 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=94.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+....+.. +.+...
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~~~~ 83 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------KKYIKG 83 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------cccHHH
Confidence 7888999999999999988753 2357778888888999999999999999988753 124567
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHH--HHHHHHHHhhCCHHHHHHHHHhC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQY--CCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty--~~li~~~~~~g~~~~A~~~~~~m 377 (523)
|..+...|...|+. ++|...|+...+. .|+ ...+ -.+...+.+.|++++|...+.+.
T Consensus 84 ~~~~a~~~~~~~~~--~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 84 YYRRAASNMALGKF--RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888999999999 9999999998875 333 3344 33444477889999999987764
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.57 E-value=0.00081 Score=62.88 Aligned_cols=134 Identities=7% Similarity=-0.125 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC-
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN- 261 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~- 261 (523)
.++-.+...+...|++++|.++|+.+.. |+-.....+-. .+.+.+++++|+..|+...... .|.
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~------------l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV------------VYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH------------HHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH------------HHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 3455677888899999999999999864 54444444444 6788999999999998554321 121
Q ss_pred -HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 262 -TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 262 -~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
...+..+-.++.+.|++++|...++........|.. ....+...-.++.+.|+. ++|..+|++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~--------------~~da~~~~glaL~~lGr~--deA~~~l~~ 233 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC--------------ARAIAWYLAMARRSQGNE--SAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT--------------HHHHHHHHHHHHHHHTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc--------------cHHHHHHHHHHHHHcCCH--HHHHHHHHH
Confidence 235666777899999999999999988753321321 112345566678889999 999999999
Q ss_pred hHHhcCCccC
Q 035847 341 MKKEYNMEPA 350 (523)
Q Consensus 341 m~~~~g~~p~ 350 (523)
+... .|+
T Consensus 234 a~a~---~P~ 240 (282)
T 4f3v_A 234 LQTT---HPE 240 (282)
T ss_dssp HHHH---SCC
T ss_pred HHhc---CCc
Confidence 9875 455
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.53 E-value=0.00058 Score=55.31 Aligned_cols=95 Identities=6% Similarity=-0.058 Sum_probs=62.9
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+...|+++.|...+....+.. ..+..+|..+...|.+.|++++|+..|++.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33445555556666666666666666665432 1245556666666666666666666665554422
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+..++..+...|.+.|++++|...|++
T Consensus 81 --------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 81 --------------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567888889999999999999999998
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.50 E-value=0.0004 Score=56.32 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=85.9
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME 147 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 147 (523)
.+...|..+-..+.+.|++++|+..|++..... +.+..++..+...|.+.|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~~~~~ 67 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------------------------PKDAKLYSNRAACYTKLLEFQ 67 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------------------------TTCHHHHHHHHHHHTTTTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCcHHHHHHHHHHHHHhccHH
Confidence 356788888999999999999999998876643 346778888999999999999
Q ss_pred HHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH
Q 035847 148 MASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLA 223 (523)
Q Consensus 148 ~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~ 223 (523)
+|...|++ ... -...+..++..+...|.+.|++++|...|+...+ | +...|..+-.
T Consensus 68 ~A~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 68 LALKDCEE-------------------CIQ-LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp HHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred HHHHHHHH-------------------HHH-hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999998 222 1233577888999999999999999999987643 3 3345555555
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.49 E-value=0.00079 Score=54.12 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=79.4
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|...+....+.. ..+...|..+...+...|++++|+..|.+.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 76 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID- 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-
Confidence 3445555566666777777777777766543 2245566666667777777777777766655422
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE 181 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 181 (523)
+.+..++..+...|.+.|++++|...|++ ... -..
T Consensus 77 -------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------~~~-~~p 111 (131)
T 2vyi_A 77 -------------------------PAYSKAYGRMGLALSSLNKHVEAVAYYKK-------------------ALE-LDP 111 (131)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HST
T ss_pred -------------------------ccCHHHHHHHHHHHHHhCCHHHHHHHHHH-------------------HHh-cCc
Confidence 34567788888999999999999999988 222 112
Q ss_pred CchhHHHHHHHHHHhcCCh
Q 035847 182 SDLLVNNSLMDFYAKCRYL 200 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~ 200 (523)
.+...+..+...+.+.|+.
T Consensus 112 ~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 112 DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp TCHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 3556777777777776654
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.47 E-value=0.00048 Score=55.48 Aligned_cols=109 Identities=10% Similarity=-0.079 Sum_probs=83.3
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+...+...|++++|+..|++..... +.+..++..+...|...|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~ 64 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------PANAVYFCNRAAAYSKLGNYAG 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------CCCHHHHHHHHHHHHHhhchHH
Confidence 45567777777788888888888887765532 3467788889999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHH
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLA 223 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~ 223 (523)
|...|++ ... -...+..++..+...|.+.|+.++|...|+...+ | +...+..+..
T Consensus 65 A~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 65 AVQDCER-------------------AIC-IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp HHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHH-------------------HHh-cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9999998 222 1233567888999999999999999999987643 3 5566777766
No 129
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.45 E-value=0.00062 Score=57.42 Aligned_cols=137 Identities=9% Similarity=-0.019 Sum_probs=83.3
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHH
Q 035847 194 YAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVL 269 (523)
Q Consensus 194 ~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll 269 (523)
+...|++++|...++..... +...|-.+-. .|.+.|++++|++.|++..+. .| +..+|..+-
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~------------~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg 72 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAK------------LYYEAKEYDLAKKYICTYINV--QERDPKAHRFLG 72 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 33456677777776655432 2234555555 667777777777777777663 34 456666677
Q ss_pred HHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHH-HHHhHHhcCCc
Q 035847 270 AACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRY-FEMMKKEYNME 348 (523)
Q Consensus 270 ~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~-~~~m~~~~g~~ 348 (523)
..+...|++++|...+...++.. +-+...|..+-..|.+.|+. ++|.+. ++...+. .
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~~~~--~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELN-----------------PTQKDLVLKIAELLCKNDVT--DGRAKYWVERAAKL---F 130 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHHCSS--SSHHHHHHHHHHHH---S
T ss_pred HHHHHcCchHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHh---C
Confidence 77777777777777777776632 11345667777777777776 655544 4555443 4
Q ss_pred cC-HhHHHHHHHHHHhhCC
Q 035847 349 PA-MEQYCCMVDLLARAGQ 366 (523)
Q Consensus 349 p~-~~ty~~li~~~~~~g~ 366 (523)
|+ ...|...-..+.+.|+
T Consensus 131 P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TTCHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 54 4555555555555543
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.44 E-value=0.0032 Score=59.46 Aligned_cols=167 Identities=10% Similarity=-0.066 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-------hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 185 LVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHL-------VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 185 ~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~-------~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
..+...+..+...|++++|.+.++...+ +.. ..+..+.. .+...|++++|++.|++...
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAA------------YVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH------------HHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHH------------HHhcCCCHHHHHHHHHHHHH
Confidence 3455677888999999999998875421 211 12333334 66778999999999999875
Q ss_pred cC---CCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC
Q 035847 256 TD---MQPN--TISLSGVLAACAQVKGFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI 329 (523)
Q Consensus 256 ~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~ 329 (523)
.. ..+. ..+|+.+-..|...|+.++|...+....+. ...++.. .....+|+.+-..|...|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----------~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----------EFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----------cchHHHHHhHHHHHHHHhhH
Confidence 32 1222 457888888999999999999999998742 1111100 00125788899999999999
Q ss_pred chHHHHHHHHHhHHhc---CCccC-HhHHHHHHHHHHhhCCHHHH-HHHHHh
Q 035847 330 QKNEGWRYFEMMKKEY---NMEPA-MEQYCCMVDLLARAGQFDDT-LNFMKK 376 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~---g~~p~-~~ty~~li~~~~~~g~~~~A-~~~~~~ 376 (523)
++|..+|+...+.. +..+. ..+|..+-..|.+.|+.++| ...+++
T Consensus 213 --~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 213 --EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp --HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999876531 11111 57888899999999999999 766665
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.43 E-value=0.013 Score=55.73 Aligned_cols=213 Identities=8% Similarity=0.004 Sum_probs=141.8
Q ss_pred hHHHHHHHHhhhCCCCCCc-chHHHHHHhccCCC--ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECT-VTYALIFQRCPKLN--NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
++|+.+++.++.. .|+. ..|+.--.++...+ +++++...++.+.... ..+..+|+.--..+
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--------------Pk~y~aW~~R~~iL 113 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--------------EKNYQIWNYRQLII 113 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--------------TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--------------cccHHHHHHHHHHH
Confidence 4677777777664 4544 34565555666666 8999999999988765 34667777544444
Q ss_pred ----Hhc---CCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH--HHHH
Q 035847 81 ----NVL---GYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--MASG 151 (523)
Q Consensus 81 ----~~~---g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~ 151 (523)
.+. +++++++++++.+.+.. +.+..+|+---..+.+.|.++ +++.
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~--------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD--------------------------PKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 334 67788888888777654 556677777777777777777 7777
Q ss_pred HhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCC------hHHHHHHHhcCCC---CChhhHHHHH
Q 035847 152 EFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRY------LKVAHCKFSKIKQ---KHLVSWNAML 222 (523)
Q Consensus 152 ~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~------~~~A~~vf~~m~~---~~~~t~~~li 222 (523)
.+++ +-. .-..|-..|+---....+.|. ++++.+.++.... .|...|+-+-
T Consensus 168 ~~~~-------------------~i~-~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~ 227 (306)
T 3dra_A 168 FVDK-------------------VID-TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL 227 (306)
T ss_dssp HHHH-------------------HHH-HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHH-------------------HHH-hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence 7777 222 123455566655555555555 6777777766542 4667888877
Q ss_pred HhhhhcCCccccchhhccCCchH-HHHHHHHHHhcC--CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 223 AGYALGGFREEITGFTQYGDGET-ALEFFSRMIQTD--MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~-A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
. .+.+.|+..+ +.++..+....+ -..+...+..+...+.+.|+.++|.++++.+.+
T Consensus 228 ~------------ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 228 G------------IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp H------------HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H------------HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7 5556666444 445666555432 134677888888888888999999999988875
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.42 E-value=0.00027 Score=61.22 Aligned_cols=116 Identities=7% Similarity=0.050 Sum_probs=83.9
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
.|+++.|...+...++.. +.+..+|..+-..|...|++++|...|+++ ++. ...+...+
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~ 81 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQA------------------LQL--RGENAELY 81 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--HCSCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHc--CCCCHHHH
Confidence 344555555555554442 446678889999999999999999999981 222 12356677
Q ss_pred HHHHHH-HHhcCCh--HHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 188 NSLMDF-YAKCRYL--KVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 188 ~~li~~-~~k~g~~--~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
..+... |.+.|+. ++|...|+...+ | +...|..+.. .|.+.|++++|...|++..+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS------------DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH------------HHHHcccHHHHHHHHHHHHhh
Confidence 777777 7788998 999999987653 4 4567777777 888999999999999998874
No 133
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.39 E-value=0.0003 Score=59.36 Aligned_cols=130 Identities=7% Similarity=-0.066 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHH
Q 035847 109 KDHRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVN 187 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 187 (523)
|+++.|.+.+...... .| +...+-.+-..|.+.|++++|...|+++ ++. -+-+..+|
T Consensus 11 ~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~a------------------l~~--~p~~~~a~ 68 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTY------------------INV--QERDPKAH 68 (150)
T ss_dssp HHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHH
T ss_pred ChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHH
Confidence 4444444444443322 22 2344556677777888888888887771 222 12246677
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHH-HHHHhcCCCCC-H
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFF-SRMIQTDMQPN-T 262 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf-~~M~~~g~~p~-~ 262 (523)
..+-..|.+.|++++|...|+...+ | +...|..+-. .|.+.|+.++|.+.| +...+ +.|+ .
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~~~~~~aa~~~~~~al~--l~P~~~ 134 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE------------LLCKNDVTDGRAKYWVERAAK--LFPGSP 134 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHHCSSSSHHHHHHHHHHH--HSTTCH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHcCChHHHHHHHHHHHHH--hCcCCH
Confidence 7777777788888888777776542 3 4456777766 667777776665543 55544 3343 3
Q ss_pred HHHHHHHHHhhc
Q 035847 263 ISLSGVLAACAQ 274 (523)
Q Consensus 263 ~t~~~ll~a~~~ 274 (523)
..|...-..+..
T Consensus 135 ~~~~l~~~ll~~ 146 (150)
T 4ga2_A 135 AVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 444443333333
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.36 E-value=0.00098 Score=51.95 Aligned_cols=97 Identities=15% Similarity=-0.019 Sum_probs=75.1
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..+.. +.+..++..+-..|.+.|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~ 58 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------PEESKYWLMKGKALYNLERYEE 58 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------cCCHHHHHHHHHHHHHccCHHH
Confidence 45677777888888888888888888766532 3456678888888999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCC--chhHHHHHHHHHHhc-CChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES--DLLVNNSLMDFYAKC-RYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--d~~~~~~li~~~~k~-g~~~~A~~vf~~m~ 211 (523)
|...|++ ... -... +..++..+...|.+. |+.++|.+.|+...
T Consensus 59 A~~~~~~-------------------a~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 59 AVDCYNY-------------------VIN-VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHH-------------------HHH-TSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHH-------------------HHH-hCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999988 322 1122 577888888999999 99999999988764
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.33 E-value=0.00081 Score=58.09 Aligned_cols=120 Identities=11% Similarity=0.033 Sum_probs=84.8
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCCh
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDH 111 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~ 111 (523)
+...|+++.|...+....+.. ..+...|..+-..|...|++++|+..|++.....
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----------- 74 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--------------PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----------- 74 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred hhhccCHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------
Confidence 456677888888888777654 2366788888999999999999999998876643
Q ss_pred HHHHHHHHHHHHhcCCCCceeHhHHHHH-HHhcCCH--HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHH
Q 035847 112 RVGKDVYDYMISIKFEGNACVKRPVLDM-FIKCGRM--EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNN 188 (523)
Q Consensus 112 ~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~ 188 (523)
+.+...+..+... |.+.|++ ++|...|++ ... -...+...+.
T Consensus 75 ---------------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~-------------------al~-~~p~~~~~~~ 119 (177)
T 2e2e_A 75 ---------------GENAELYAALATVLYYQASQHMTAQTRAMIDK-------------------ALA-LDSNEITALM 119 (177)
T ss_dssp ---------------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-------------------HHH-HCTTCHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH-------------------HHH-hCCCcHHHHH
Confidence 3355666677777 7788887 888888887 222 1123456777
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...|.+.|+.++|...|+...
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 78888888888888888887653
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.30 E-value=0.00073 Score=57.17 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=72.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+...|..+-.+|.+.|++++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------P~~~~~~~~lg~~~~~~g~~~~ 88 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------FYNVDYIMGLAAIYQIKEQFQQ 88 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHHHccHHH
Confidence 45567777778888888888888888877643 3467778888888888888888
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ ++. -+.+...|..+-.+|.+.|+.++|...|+...
T Consensus 89 Ai~~~~~a------------------l~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 89 AADLYAVA------------------FAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHHHHH------------------HHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------Hhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888881 222 12246677788888888888888888887653
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.29 E-value=0.0011 Score=51.57 Aligned_cols=97 Identities=10% Similarity=-0.098 Sum_probs=79.9
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
+..++..+...|.+.|++++|...|++ ... -...+..++..+-..|.+.|++++|...|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 64 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEK-------------------AIQ-LDPEESKYWLMKGKALYNLERYEEAVDCYN 64 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-hCcCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 456788888999999999999999998 222 123356788889999999999999999998
Q ss_pred cCCC--C---ChhhHHHHHHhhhhcCCccccchhhcc-CCchHHHHHHHHHHhcC
Q 035847 209 KIKQ--K---HLVSWNAMLAGYALGGFREEITGFTQY-GDGETALEFFSRMIQTD 257 (523)
Q Consensus 209 ~m~~--~---~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~~lf~~M~~~g 257 (523)
...+ | +...|..+.. .+.+. |++++|.+.|++.....
T Consensus 65 ~a~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 65 YVINVIEDEYNKDVWAAKAD------------ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTSCCTTCHHHHHHHHH------------HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCcccchHHHHHHHHH------------HHHHHhCCHHHHHHHHHHHhhcc
Confidence 7642 4 4678888888 88999 99999999999998754
No 138
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.28 E-value=0.03 Score=53.98 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=130.2
Q ss_pred CceeHhHHHHHHHhcC-CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhc-C-ChHHHHH
Q 035847 129 NACVKRPVLDMFIKCG-RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKC-R-YLKVAHC 205 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g-~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~-g-~~~~A~~ 205 (523)
+..+||.--..+...| .+++++.+++. +-. ...-+..+|+.--..+.+. + +.+++..
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~-------------------~L~-~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNE-------------------FAV-QNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHH-------------------HHH-TTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHH-------------------HHH-hCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4456777666667777 58999999988 333 2344566787777777666 6 8899999
Q ss_pred HHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCCch--------HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Q 035847 206 KFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGE--------TALEFFSRMIQTDMQPNTISLSGVLAACAQ 274 (523)
Q Consensus 206 vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~--------~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 274 (523)
+++.+.+ +|-.+|+---- .+.+.|.++ ++++.++++.+... -|...|+-.-..+.+
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~w------------vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHW------------LYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHH------------HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCHHHHHHHHH------------HHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 9998876 45566765444 333334444 89999999998653 377788877777777
Q ss_pred cCC-------hhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCC------------------
Q 035847 275 VKG-------FKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAI------------------ 329 (523)
Q Consensus 275 ~g~-------~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~------------------ 329 (523)
.+. ++++.+.....+... .-|...|+-+-..+.+.|+.
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-----------------P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-----------------PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-----
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHhcCCCcccccccccccccccccc
Confidence 765 466666666666532 23566777766666666553
Q ss_pred chHHHHHHHHHhHHhc----CCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 330 QKNEGWRYFEMMKKEY----NMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 330 ~~~~a~~~~~~m~~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
...+..++...+.... .-.++......|.+.|...|+.++|.++++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0022333333332210 013667888899999999999999999988873
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.26 E-value=0.0018 Score=52.75 Aligned_cols=92 Identities=12% Similarity=0.105 Sum_probs=57.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...-..|.+.|++++|...|+++ ++. -+.+..+|..+-.+|.+.|++++|...|+...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEA------------------VKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 4455566677777777777777761 222 12245566666677777777777777766543
Q ss_pred C---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 Q---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+ .+...|..+-. .|.+.|++++|++.|++..+
T Consensus 75 ~~~p~~~~a~~~lg~------------~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 75 RLDSKFIKGYIRKAA------------CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHH------------HHHHCCCHHHHHHHHHHHHH
Confidence 2 34456666666 66667777777777776665
No 140
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0072 Score=60.23 Aligned_cols=197 Identities=10% Similarity=-0.038 Sum_probs=132.3
Q ss_pred hccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCC----CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc------
Q 035847 31 RCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMP----ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG------ 100 (523)
Q Consensus 31 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 100 (523)
.+.+.|++++|.+.+..+.+..-....... ..... .....++..|...|.+.|++++|.+.+......-
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAA-GASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSS-SSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHH-HHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678999999999998875421100000 00000 0001247789999999999999999998876421
Q ss_pred --------HHHH-hhccCChHHHHHHHHHHHHhc----CCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhh
Q 035847 101 --------VYKA-CSELKDHRVGKDVYDYMISIK----FEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKH 166 (523)
Q Consensus 101 --------ll~~-~~~~~~~~~a~~~~~~m~~~g----~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 166 (523)
.+.. +...|+.+.+.+++....... ..+. ..++..|...|...|++++|..++++
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~----------- 160 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND----------- 160 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH-----------
Confidence 2222 335678899998888776532 1221 34677889999999999999999988
Q ss_pred HhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC-----hhhHHHHHHhhhhcCCccccc
Q 035847 167 GKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-----KH-----LVSWNAMLAGYALGGFREEIT 235 (523)
Q Consensus 167 ~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-----~~-----~~t~~~li~~~~~~g~~~~i~ 235 (523)
++....+. +-.+ ...++..++..|...|++++|...++.... ++ ...|..+..
T Consensus 161 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~------------ 224 (434)
T 4b4t_Q 161 ---LLREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI------------ 224 (434)
T ss_dssp ---HHHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH------------
T ss_pred ---HHHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH------------
Confidence 22222222 2222 356889999999999999999999876531 22 134555666
Q ss_pred hhhccCCchHHHHHHHHHHh
Q 035847 236 GFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~ 255 (523)
.+...|++.+|...|.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 77888999999988877654
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.23 E-value=0.0011 Score=62.49 Aligned_cols=181 Identities=6% Similarity=-0.106 Sum_probs=104.2
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-..+.+.|+++.|...+....+.. ..+...|..+-..|.+.|++++|+..|++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34456666677778889999999988888764 2367788888888888999999999888876643
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccC-------ch----hhHhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLS-------LL----KHGKE 169 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-------~~----~~~~~ 169 (523)
+.+...+..+-.+|.+.|++++|...|+++.-.... .+ ..+..
T Consensus 69 --------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 122 (281)
T 2c2l_A 69 --------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122 (281)
T ss_dssp --------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHH
Confidence 223445555555666666666666666552100000 00 00000
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChh-hHHHHHHhhhhcCCccccchhhcc-CCchH
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--KHLV-SWNAMLAGYALGGFREEITGFTQY-GDGET 245 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~~~~-t~~~li~~~~~~g~~~~i~~~~~~-g~~~~ 245 (523)
.-...........+..+...+-.. ..|+.++|.+.++...+ |+-. ....+-. .+.+. +.+++
T Consensus 123 ~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------------~~~~~~~~~~~ 188 (281)
T 2c2l_A 123 KRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQAC------------IEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHH------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHH------------HHHHHHHHHHH
Confidence 000001111334444444444332 26888888888877654 4332 2222222 23333 56788
Q ss_pred HHHHHHHHHh
Q 035847 246 ALEFFSRMIQ 255 (523)
Q Consensus 246 A~~lf~~M~~ 255 (523)
|.++|....+
T Consensus 189 a~~~f~~a~~ 198 (281)
T 2c2l_A 189 MDELFSQVDE 198 (281)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhhc
Confidence 8999987765
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.20 E-value=0.001 Score=64.48 Aligned_cols=127 Identities=9% Similarity=0.009 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----------------ceeH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----------------ACVK 133 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~ 133 (523)
...|..+-..|.+.|++++|+..|++.... .|+ ..+|
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---------------------------~p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---------------------------LEYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------------------TTTCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------hhccccCChHHHHHHHHHHHHHH
Confidence 445666666666667777777666665442 233 3788
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~- 212 (523)
..+-..|.+.|++++|...|+++ ++. -..+...|..+-.+|.+.|++++|...|+...+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~a------------------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKA------------------LEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999991 222 233677899999999999999999999988653
Q ss_pred -C-ChhhHHHHHHhhhhcCCccccchhhccCCchHH-HHHHHHHHh
Q 035847 213 -K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETA-LEFFSRMIQ 255 (523)
Q Consensus 213 -~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A-~~lf~~M~~ 255 (523)
| +...|..+-. .+.+.|+.++| ..+|+.|..
T Consensus 260 ~P~~~~a~~~l~~------------~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 260 YPNNKAAKTQLAV------------CQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CSSCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4 5567888877 77788888888 456776653
No 143
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.20 E-value=0.026 Score=57.72 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=99.2
Q ss_pred hHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChh-hHHHHHHhhhhcCCccccchhhccCCchHH
Q 035847 169 EIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ-KHLV-SWNAMLAGYALGGFREEITGFTQYGDGETA 246 (523)
Q Consensus 169 ~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~-~~~~-t~~~li~~~~~~g~~~~i~~~~~~g~~~~A 246 (523)
.++...+.. +..+..+|-..+..+.+.|+++.|..+|++... |+.. .|.... ...+.++.
T Consensus 200 ~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~y~----------------~~~e~~~~ 261 (493)
T 2uy1_A 200 FIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYG----------------LVMDEEAV 261 (493)
T ss_dssp HHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHH----------------HHTTCTHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHHHH----------------hhcchhHH
Confidence 344444554 234466787888888899999999999986432 4332 222211 11111221
Q ss_pred HHHHHHHHhcC---------CCC---CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 247 LEFFSRMIQTD---------MQP---NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 247 ~~lf~~M~~~g---------~~p---~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
++.+.+.- ..+ ....|...+...-+.+.++.|+++++.. +.. ..+. .+.
T Consensus 262 ---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~--------------~v~ 322 (493)
T 2uy1_A 262 ---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP--------------HVF 322 (493)
T ss_dssp ---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH--------------HHH
T ss_pred ---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh--------------HHH
Confidence 22222210 111 1244666666666678899999999988 311 0111 112
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
.+.+.+.... .++. +.|..+|+...+.++-.| .-+...++...+.|+.+.|..+++..
T Consensus 323 i~~A~lE~~~-~~d~--~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 323 IYCAFIEYYA-TGSR--ATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHH-HCCS--HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHH-CCCh--HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2223333333 2358 999999999988754333 34566788888999999999999997
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.20 E-value=0.0023 Score=52.25 Aligned_cols=99 Identities=11% Similarity=-0.048 Sum_probs=77.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 67 ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 67 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..+...|..+-..+.+.|++++|+..|.+..... +.+...|..+-..|.+.|++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~l~~~~~~~~~~ 59 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------PLVAVYYTNRALCYLKMQQP 59 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------cCcHHHHHHHHHHHHHhcCH
Confidence 3467788888888999999999999998876643 34567888888899999999
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
++|...|+++ ++. ...+...+..+-..|.+.|++++|...|+...
T Consensus 60 ~~A~~~~~~a------------------l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 60 EQALADCRRA------------------LEL--DGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HHh--CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999881 222 12356788888889999999999998888654
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.18 E-value=0.0017 Score=54.84 Aligned_cols=93 Identities=11% Similarity=0.014 Sum_probs=80.5
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+.+.|++++|...+....+.. ..+...|..+-..|.+.|++++|+..|++.....
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-- 100 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-- 100 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--
Confidence 456666677889999999999999999875 3478899999999999999999999999987743
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...|..+-.+|.+.|++++|...|++
T Consensus 101 ------------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 101 ------------------------KNDYTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp ------------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44677888999999999999999999998
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.0019 Score=50.76 Aligned_cols=97 Identities=8% Similarity=-0.102 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|..+...+...|++++|+..|++..... +.+...+..+...|.+.|++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~A 57 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------PHNHVLYSNRSAAYAKKGDYQKA 57 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------CCcHHHHHHHHHHHHhhccHHHH
Confidence 3456666677777777777777777665432 34667788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
...+++ ... -...+..++..+...|.+.|+.++|...|+...+
T Consensus 58 ~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 58 YEDGCK-------------------TVD-LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999988 222 1223567788888899999999999999887543
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.17 E-value=0.0046 Score=48.42 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=77.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccH
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGV 101 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gl 101 (523)
...+..+...+...|+++.|...+....... ..+...|..+...|.+.|++++|+..+++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-
Confidence 3456667777888999999999999998764 2367788888889999999999999998876643
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...+..+...|.+.|++++|...|++
T Consensus 69 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 69 -------------------------PDWGKGYSRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------cccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34567788889999999999999999988
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.15 E-value=0.0014 Score=55.11 Aligned_cols=97 Identities=10% Similarity=-0.055 Sum_probs=73.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+...|..+-.+|.+.|++++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~ 73 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------HYDSRFFLGLGACRQAMGQYDL 73 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------cccHHHHHHHHHHHHHHhhHHH
Confidence 45567777778888888888888888776543 4467778888888999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ +.. -+.+...+..+-.+|...|+.++|...|+...
T Consensus 74 A~~~~~~a------------------l~l--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 74 AIHSYSYG------------------AVM--DIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHH------------------HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------Hhc--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999881 222 12346677888888999999999998888654
No 149
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.11 E-value=0.0032 Score=51.18 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=70.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|...=..|.+.|++++|++.|++..+.. +.+..+|..+-.+|.+.|++++|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~~~~~~~~~~~~~A~ 67 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------PENAILYSNRAACLTKLMEFQRAL 67 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCCHHHHHHHhhHHHhhccHHHHH
Confidence 456666666777777777777777665532 446778888889999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..|+++ ++. -..+...|..+-.+|.+.|++++|...|+...
T Consensus 68 ~~~~~a------------------l~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 68 DDCDTC------------------IRL--DSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHh--hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999881 222 12346788888899999999999999998754
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.10 E-value=0.0047 Score=59.77 Aligned_cols=129 Identities=9% Similarity=-0.045 Sum_probs=104.9
Q ss_pred hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHhhccCChhH
Q 035847 215 LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN--------------TISLSGVLAACAQVKGFKL 280 (523)
Q Consensus 215 ~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~--------------~~t~~~ll~a~~~~g~~~~ 280 (523)
...|..+-. .|.+.|++++|+..|++..+..-... ...|..+-.++.+.|++++
T Consensus 147 a~~~~~~g~------------~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~ 214 (336)
T 1p5q_A 147 STIVKERGT------------VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA 214 (336)
T ss_dssp HHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 446777777 88899999999999999887532211 4788888899999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHH
Q 035847 281 GKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVD 359 (523)
Q Consensus 281 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~ 359 (523)
|.+.++..++.. +.+...|..+-.+|...|+. ++|...|+...+. .|+ ...+..+..
T Consensus 215 A~~~~~~al~~~-----------------p~~~~a~~~lg~~~~~~g~~--~~A~~~~~~al~l---~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 215 AIESCNKALELD-----------------SNNEKGLSRRGEAHLAVNDF--ELARADFQKVLQL---YPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 999999998742 22567888999999999999 9999999998865 454 678888889
Q ss_pred HHHhhCCHHHH-HHHHHhC
Q 035847 360 LLARAGQFDDT-LNFMKKM 377 (523)
Q Consensus 360 ~~~~~g~~~~A-~~~~~~m 377 (523)
++.+.|+.++| ..++++|
T Consensus 273 ~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 99999999998 4456655
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.07 E-value=0.0019 Score=53.61 Aligned_cols=96 Identities=10% Similarity=-0.088 Sum_probs=71.4
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...+..+-..+.+.|++++|+..|++..... +.+...|..+-..|.+.|++++|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A 71 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------HYDARYFLGLGACRQSLGLYEQA 71 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------CccHHHHHHHHHHHHHHhhHHHH
Confidence 4455566667777888888888887766543 44677788888889999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|+++ +.. -+.+...+..+-.+|...|+.++|...|+...
T Consensus 72 ~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 72 LQSYSYG------------------ALM--DINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHH------------------HHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH------------------Hhc--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999881 222 12345677788888999999999999988754
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.06 E-value=0.0017 Score=52.10 Aligned_cols=104 Identities=8% Similarity=0.067 Sum_probs=80.4
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..+..+...|...|+++.|...|++ ... ....+..++..+...|.+.|++++|...|+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~-------------------a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDK-------------------AKE-LDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHh-cCCccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567788889999999999999998 222 12346778889999999999999999999876
Q ss_pred CC--C-C-------hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHH
Q 035847 211 KQ--K-H-------LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGV 268 (523)
Q Consensus 211 ~~--~-~-------~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~l 268 (523)
.+ | + ..+|..+.. .|.+.|++++|.+.|++..+. .|+......+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~------------~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGN------------SYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHH------------HHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 53 2 2 556777777 888999999999999998875 3565444444
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.015 Score=57.91 Aligned_cols=186 Identities=6% Similarity=-0.071 Sum_probs=124.1
Q ss_pred HHHHhcCCchHHHHHHHHhhHcc--------------------------HHHHhhccCChHHHHHHHHHHHHhcC-CCCc
Q 035847 78 GMYNVLGYYEEIVNLFYLLIDEG--------------------------VYKACSELKDHRVGKDVYDYMISIKF-EGNA 130 (523)
Q Consensus 78 ~~~~~~g~~~~A~~l~~~m~~~g--------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~ 130 (523)
..+.+.|++++|++.|.+..+.. +...|...|++++|.+.+....+.-- .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45677899999999998876532 56677777888888877776654311 1111
Q ss_pred ----eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHH
Q 035847 131 ----CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHC 205 (523)
Q Consensus 131 ----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~ 205 (523)
.+.+.+-..+...|+.+.|..++.++ .....+. +..+ -..++..|...|...|++++|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKS--------------IEFAKRE-KRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHH--------------HHHHHHS-SCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------HHHHHHh-CccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 12233333444557777777777661 1111122 3333 35678889999999999999999
Q ss_pred HHhcCC--------CCC-hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc--CC-CC-C--HHHHHHHHH
Q 035847 206 KFSKIK--------QKH-LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT--DM-QP-N--TISLSGVLA 270 (523)
Q Consensus 206 vf~~m~--------~~~-~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~--g~-~p-~--~~t~~~ll~ 270 (523)
+++... .+. +..|..++. .|...|++++|..+++..... .+ .| . ...+..+..
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESK------------VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHH------------HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 988653 122 246788888 889999999999999887642 12 12 1 245666677
Q ss_pred HhhccCChhHHHHHHHHHHH
Q 035847 271 ACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+...++.+.|...+....+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 78889999999988777654
No 154
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.03 E-value=0.0056 Score=50.96 Aligned_cols=125 Identities=12% Similarity=-0.016 Sum_probs=91.2
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHcc---------------HHHHhhccCChHHHHHHHHHHHHhcCC-CC----
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG---------------VYKACSELKDHRVGKDVYDYMISIKFE-GN---- 129 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~---- 129 (523)
..+|..+-..|...|++++|+..|++..... +-..+...|++++|.+.+....+..-. ++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3567788888899999999999998765432 566667889999999999887764311 11
Q ss_pred ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 130 ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 130 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
..++..+-..|...|++++|...|+++ .++. .+. +.. ....++..+-..|...|+.++|...++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-----------~~~~---~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH-----------LAIA---QEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHH---HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HHHH---HHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 446777888899999999999999881 1111 111 211 124567888889999999999998887
Q ss_pred c
Q 035847 209 K 209 (523)
Q Consensus 209 ~ 209 (523)
+
T Consensus 154 ~ 154 (164)
T 3ro3_A 154 K 154 (164)
T ss_dssp H
T ss_pred H
Confidence 5
No 155
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.02 E-value=0.01 Score=48.25 Aligned_cols=96 Identities=6% Similarity=-0.118 Sum_probs=81.2
Q ss_pred CCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 20 ECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 20 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
.+...|..+-..+...|+++.|...+....+.. ..+...|..+-..|.+.|++++|+..|++....
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------PLVAVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888888899999999999999988865 236788999999999999999999999887764
Q ss_pred cHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 100 GVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 100 gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
. +.+..++..+-..|.+.|++++|...|++
T Consensus 73 ~--------------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 73 D--------------------------GQSVKAHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp C--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C--------------------------chhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 34567888899999999999999999988
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.99 E-value=0.0028 Score=50.83 Aligned_cols=96 Identities=13% Similarity=0.066 Sum_probs=71.8
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+...|+++.|...+....+.. ..+...|..+...|.+.|++++|+..|++.....
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 68 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--------------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-- 68 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--
Confidence 345666667778888888888888887764 2356778888888888888888888887765532
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
. ...++ ..++..+...|.+.|++++|...|++
T Consensus 69 -------------------~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 69 -------------------R--ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp -------------------H--HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------c--ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 0 00122 56778888999999999999999998
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0048 Score=49.65 Aligned_cols=95 Identities=8% Similarity=-0.077 Sum_probs=69.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMAS 150 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 150 (523)
..|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..|.+.|++++|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~~a~~~~~~~~~~~A~ 58 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNRAAALAKLMSFPEAI 58 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHhcCHHHHH
Confidence 345555556666677777777666655432 446778888999999999999999
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
..|+++ ++. -..+...|..+-.+|.+.|+.++|...|+...
T Consensus 59 ~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 59 ADCNKA------------------IEK--DPNFVRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH------------------HHh--CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999881 222 12346788888899999999999999888653
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.98 E-value=0.0026 Score=51.76 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=77.0
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+..|-..|.+.|++++|...|+++ ++. -+.+..+|+.+-.+|.+.|++++|...|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~A------------------l~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKA------------------IEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566778899999999999999981 222 12357788999999999999999999998764
Q ss_pred C--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 212 Q--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 212 ~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
+ | +...|..+..+|.+.|. .+...|++++|++.|++-... .||..+...
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~-----~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGN-----AFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 3 2 22223333333333333 778899999999999987763 466555443
No 159
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.96 E-value=0.0049 Score=51.67 Aligned_cols=89 Identities=13% Similarity=0.009 Sum_probs=61.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+.+.|++++|+..|+...... +.+...|..+-.++...|++++|.+.++..++.. +.+...
T Consensus 30 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------p~~~~~ 91 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-----------------IXEPRF 91 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCTHH
T ss_pred HHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-----------------CCCchH
Confidence 6677788888888888776642 1255666666667777788888888777776632 124456
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|..+-.+|...|+. ++|...|+...+.
T Consensus 92 ~~~lg~~~~~~g~~--~~A~~~~~~al~~ 118 (148)
T 2vgx_A 92 PFHAAECLLQXGEL--AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHH
Confidence 66777777777887 7788777777654
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.96 E-value=0.003 Score=53.72 Aligned_cols=97 Identities=12% Similarity=-0.069 Sum_probs=76.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..|.+.|++++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~g~~~~ 63 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------PANPIYLSNRAAAYSASGQHEK 63 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CcCHHHHHHHHHHHHHccCHHH
Confidence 45567777778888888888888887766532 3467788889999999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|+++ ++. -..+...|..+-..|.+.|++++|...|+...
T Consensus 64 A~~~~~~a------------------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 64 AAEDAELA------------------TVV--DPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------HHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999981 222 12347788899999999999999999998764
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0058 Score=50.30 Aligned_cols=97 Identities=12% Similarity=0.020 Sum_probs=77.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC----ceeHhHHHHHHHhc
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN----ACVKRPVLDMFIKC 143 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~ 143 (523)
.+...|..+-..+.+.|++++|+..|++..+. .|+ ..++..+-..|.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---------------------------~~~~~~~~~~~~~~a~~~~~~ 78 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL---------------------------DATPQDQAVLHRNRAACHLKL 78 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---------------------------CCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---------------------------cccchHHHHHHHHHHHHHHHH
Confidence 35677888888889999999999999887653 455 57788888899999
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|++++|...|++ ... -...+...+..+...|.+.|+.++|...|+...
T Consensus 79 ~~~~~A~~~~~~-------------------~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 79 EDYDKAETEASK-------------------AIE-KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp TCHHHHHHHHHH-------------------HHH-HTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHH-------------------HHh-hCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999988 222 112356778888899999999999999998754
No 162
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.93 E-value=0.0065 Score=50.53 Aligned_cols=129 Identities=14% Similarity=0.059 Sum_probs=93.1
Q ss_pred hhhccCCchHHHHHHHHHHhcCCC-CC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQ-PN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLG 310 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 310 (523)
.|...|++++|+..|++..+.... ++ ..++..+-..+...|++++|.+.+....+..-..+.. .
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----------~ 86 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR-----------A 86 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------H
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc-----------H
Confidence 778899999999999987653111 12 1467777788889999999999998887632110000 0
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhc---CCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 311 TGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEY---NMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 311 p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~---g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
....++..+-..|...|+. ++|..+++...+.. +..+. ...+..+...+...|++++|.+.+++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDY--EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0134677888899999999 99999998876431 21122 456778888999999999999998763
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0063 Score=48.93 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=62.6
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+..+-..+.+.|++++|...|+++ ++. ...+...|..+-.+|.+.|++++|...|+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEM------------------IKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 65 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH------------------HHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4555666777788888888888771 222 12346677777777888888888887777654
Q ss_pred C--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 212 Q--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 212 ~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
+ | +...|..+-. .+...|++++|++.|++..+
T Consensus 66 ~~~p~~~~~~~~lg~------------~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 66 EKDPNFVRAYIRKAT------------AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHH------------HHHHHhCHHHHHHHHHHHHH
Confidence 2 3 4456666666 77777888888888877765
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.87 E-value=0.0049 Score=51.05 Aligned_cols=93 Identities=9% Similarity=0.039 Sum_probs=77.2
Q ss_pred chHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHH
Q 035847 23 VTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVY 102 (523)
Q Consensus 23 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll 102 (523)
..+..+-..+.+.|+++.|...+....... ..+...|..+-..|.+.|++++|+..|++.....
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 82 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-- 82 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 345555567778999999999999998865 2477889999999999999999999999877643
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+...+..+-.+|...|++++|...|++
T Consensus 83 ------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 83 ------------------------INEPRFPFHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp ------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44667788888999999999999999988
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.77 E-value=0.0049 Score=57.95 Aligned_cols=175 Identities=7% Similarity=-0.076 Sum_probs=104.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCC
Q 035847 183 DLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
+...+..+-..|.+.|++++|...|+... .| +...|..+-. .|.+.|++++|+..|++..+. .
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~------------~~~~~~~~~~A~~~~~~al~~--~ 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRAL------------CYLKMQQPEQALADCRRALEL--D 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTTS--C
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHH------------HHHHhcCHHHHHHHHHHHHHh--C
Confidence 34566677778888888888888887654 24 5567777777 777888888888888887764 3
Q ss_pred C-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCC----chHHHHhHHHhhh---------CCCCCcchHHHHHHHHHh
Q 035847 260 P-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ----LSTGVGIALISIQ---------GLGTGSFVWNSLIDMYGR 325 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~----~~~~~~~~li~~y---------~~~p~~~~~n~li~~~~~ 325 (523)
| +...+..+-.++...|+.++|...+....+..-. ....++..+-... ...|+.......+..+.
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~- 147 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI- 147 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence 4 4566777777888888888888888777663210 0111111111100 11222222233333332
Q ss_pred cCCCchHHHHHHHHHhHHhcCCccCHhH-HHHHHHHHHhh-CCHHHHHHHHHhC
Q 035847 326 CGAIQKNEGWRYFEMMKKEYNMEPAMEQ-YCCMVDLLARA-GQFDDTLNFMKKM 377 (523)
Q Consensus 326 ~g~~~~~~a~~~~~~m~~~~g~~p~~~t-y~~li~~~~~~-g~~~~A~~~~~~m 377 (523)
.|+. ++|.+.++... ...|+... ...+-..+.+. +.+++|.++|.+.
T Consensus 148 ~~~~--~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAER--ERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHH--HHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH--HHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566 77777666554 33555433 23333334443 5677788887765
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.76 E-value=0.0038 Score=54.99 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=63.0
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+|..+-..|.+.|++++|...|++ ... -...+...+..+-.+|.+.|++++|...|+..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~-------------------al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASK-------------------VLK-IDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-------------------HHH-hCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 6778888999999999999999998 222 12345778888999999999999999999876
Q ss_pred C--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHH-HHHHHHHhc
Q 035847 211 K--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETAL-EFFSRMIQT 256 (523)
Q Consensus 211 ~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~-~lf~~M~~~ 256 (523)
. .| +...+..+-. .+...++..++. ..|..|...
T Consensus 149 l~~~p~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYEL------------CVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHH------------HHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcc
Confidence 4 24 4556666666 555555555555 455555443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.74 E-value=0.02 Score=48.43 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=60.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
.+.+.|++++|++.|++..+.. .-+...|..+-.++.+.|++++|...++..++.. +.+...
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~ 81 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-----------------PKYSKA 81 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------------CCCHHH
Confidence 6777788888888888777642 1245666666677777777777777777776642 123456
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|..+-..|...|+. ++|...|+...+.
T Consensus 82 ~~~lg~~~~~~g~~--~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADY--KGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCH--HHHHHHHHHHHHh
Confidence 66777777777777 7777777776654
No 168
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.71 E-value=0.011 Score=60.30 Aligned_cols=129 Identities=6% Similarity=-0.151 Sum_probs=94.1
Q ss_pred HHHhhccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 102 YKACSELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
+..+...|++++|..++.+.++.. +.|+ ..+++.|...|...|++++|..++++ +..+....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~ 384 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR-----------MVDGYMKL 384 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHH
Confidence 344567899999999998887642 2332 45899999999999999999999998 33333332
Q ss_pred hhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCC---hh-hHHHHHHhhhhcCCccccchhhccCC
Q 035847 175 LKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKIK-------QKH---LV-SWNAMLAGYALGGFREEITGFTQYGD 242 (523)
Q Consensus 175 ~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m~-------~~~---~~-t~~~li~~~~~~g~~~~i~~~~~~g~ 242 (523)
.-. -.|+ ..+++.|-..|...|++++|..++++.. -|| +. +.+.+-. ++...+.
T Consensus 385 lG~--~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~------------~~~e~~~ 450 (490)
T 3n71_A 385 YHH--NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQ------------TEMELRM 450 (490)
T ss_dssp SCT--TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH------------HHHHHHH
T ss_pred cCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH------------HHHHHHH
Confidence 222 2344 5688999999999999999999888653 133 32 3444444 6677888
Q ss_pred chHHHHHHHHHHh
Q 035847 243 GETALEFFSRMIQ 255 (523)
Q Consensus 243 ~~~A~~lf~~M~~ 255 (523)
+.+|..+|..+++
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 169
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.70 E-value=0.0029 Score=64.50 Aligned_cols=141 Identities=10% Similarity=0.029 Sum_probs=98.4
Q ss_pred ccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCC
Q 035847 32 CPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKD 110 (523)
Q Consensus 32 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~ 110 (523)
+-..|++++|..++++.....-. +|.. ..|+ ..++|.|...|...|++++|..++++...
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~------~lg~-~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------ 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEP------VFAD-TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------ 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT------TBCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHH------hcCC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------------
Confidence 44789999999999888753210 0000 0233 46899999999999999999999987543
Q ss_pred hHHHHHHHHHHHHhcCCCC-ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-hhHHH
Q 035847 111 HRVGKDVYDYMISIKFEGN-ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-LLVNN 188 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~~~~~ 188 (523)
++....-.. .|+ ..+++.|-..|...|++++|..++++ +..+.....-. . .|+ ..+.+
T Consensus 380 ------i~~~~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~-----------Al~i~~~~lG~-~-Hp~~~~~~~ 439 (490)
T 3n71_A 380 ------GYMKLYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICK-----------AYAILLVTHGP-S-HPITKDLEA 439 (490)
T ss_dssp ------HHHHHSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHTCT-T-SHHHHHHHH
T ss_pred ------HHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-----------HHHHHHHHhCC-C-ChHHHHHHH
Confidence 333322111 222 45788999999999999999999998 34444433322 1 233 44667
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.|-.++...|..++|+.++..++
T Consensus 440 ~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 440 MRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999998875
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.044 Score=44.78 Aligned_cols=99 Identities=7% Similarity=0.055 Sum_probs=75.7
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPN----TISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.+...|..+-. .+.+.|++++|++.|++..+. .|+ ...+..+-.++...|++++|.+.+...
T Consensus 26 ~~~~~~~~~a~------------~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 26 SSVEQLRKEGN------------ELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp CCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------HHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 35566777777 888899999999999998774 466 566777777788888888888888887
Q ss_pred HHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 289 LRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 289 ~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
.+.. +.+...|..+-..|...|+. ++|...|++..+.
T Consensus 92 ~~~~-----------------~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~ 128 (148)
T 2dba_A 92 IEKD-----------------GGDVKALYRRSQALEKLGRL--DQAVLDLQRCVSL 128 (148)
T ss_dssp HHHT-----------------SCCHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred HhhC-----------------ccCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHc
Confidence 7642 12445677777888888888 8888888887754
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.69 E-value=0.0054 Score=49.34 Aligned_cols=95 Identities=9% Similarity=-0.112 Sum_probs=70.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
...|-.+-..+.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------P~~~~a~~~lg~~~~~~g~~~~A 70 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKE--------------------------PEREEAWRSLGLTQAENEKDGLA 70 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445566677788888888888888776643 34667778888888888999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...|+++ ++. .| +...+..+-..|.+.|+.++|...|+...
T Consensus 71 ~~~~~~a------------------l~l---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 71 IIALNHA------------------RML---DPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHH------------------HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9888881 222 33 45677888888888899999988888654
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.67 E-value=0.042 Score=55.87 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=89.8
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSF 314 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~ 314 (523)
.+.+.|++++|++.|++..+. .| +..+|..+-.++.+.|++++|.+.++..++.. +.+..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-----------------p~~~~ 75 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-----------------KKYIK 75 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----------------TTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------CCCHH
Confidence 677899999999999998875 44 47788889899999999999999999998742 22456
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHH--HHhhCCHHHHHHHHH
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDL--LARAGQFDDTLNFMK 375 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~--~~~~g~~~~A~~~~~ 375 (523)
.|..+-.+|...|+. ++|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++
T Consensus 76 ~~~~lg~~~~~~g~~--~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 76 GYYRRAASNMALGKF--RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788899999999999 9999999998875 343 3445445444 788899999999988
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.61 E-value=0.011 Score=51.94 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCC---C-----------cchHHHHHHHHHhcCCchHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPER---N-----------VFSWTSMMGMYNVLGYYEEI 89 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~---~-----------~~~~~~li~~~~~~g~~~~A 89 (523)
.+..+-..+.+.|+++.|...+....+.... .+ . ..+|..+-..|.+.|++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 107 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH------------TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKA 107 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT------------CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 4555566777899999999999998875320 11 1 15666777777777777777
Q ss_pred HHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhh
Q 035847 90 VNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKE 169 (523)
Q Consensus 90 ~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~ 169 (523)
+..|++..... +.+..++..+-.+|...|++++|...|+++
T Consensus 108 ~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------- 148 (198)
T 2fbn_A 108 IDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKENLYKA------------- 148 (198)
T ss_dssp HHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHHHHHH-------------
Confidence 77777665432 345678888889999999999999999881
Q ss_pred HhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHH-HHHhcC
Q 035847 170 IHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAH-CKFSKI 210 (523)
Q Consensus 170 ~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~-~vf~~m 210 (523)
++. ...+..++..+...+.+.++.+++. ..|..|
T Consensus 149 -----l~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 149 -----ASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp -----HHH--STTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred -----HHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1224567777777777777766665 444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.57 E-value=0.0049 Score=62.87 Aligned_cols=120 Identities=13% Similarity=0.001 Sum_probs=88.6
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhc
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~ 107 (523)
+-..+.+.|++++|...+++..+.. ..+..+|..+-..|.+.|++++|++.|++..+..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------- 70 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--------------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD------- 70 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 3345667899999999999988764 2367889999999999999999999998877643
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhH
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLV 186 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~ 186 (523)
+.+..+|..+-.+|.+.|++++|.+.|+++ ++. .| +...
T Consensus 71 -------------------p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a------------------l~~---~p~~~~~ 110 (477)
T 1wao_1 71 -------------------KKYIKGYYRRAASNMALGKFRAALRDYETV------------------VKV---KPHDKDA 110 (477)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------HHH---STTCTTH
T ss_pred -------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh---CCCCHHH
Confidence 345678888999999999999999999981 222 22 2334
Q ss_pred HHHHHHH--HHhcCChHHHHHHHh
Q 035847 187 NNSLMDF--YAKCRYLKVAHCKFS 208 (523)
Q Consensus 187 ~~~li~~--~~k~g~~~~A~~vf~ 208 (523)
+..+-.+ +.+.|++++|.+.++
T Consensus 111 ~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444 888899999999998
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.53 E-value=0.0048 Score=49.09 Aligned_cols=104 Identities=8% Similarity=0.105 Sum_probs=70.1
Q ss_pred ccCCchHHHHHHHHHHhcCC-CC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchH
Q 035847 239 QYGDGETALEFFSRMIQTDM-QP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVW 316 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~ 316 (523)
..|++++|+..|++..+.+. .| +...+..+-..+...|++++|.+.++..++..- .+...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----------------~~~~~~ 64 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----------------NHQALR 64 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------TCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------CchHHH
Confidence 35788899999999887541 13 346677777788889999999999988887531 244577
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHH
Q 035847 317 NSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLL 361 (523)
Q Consensus 317 n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~ 361 (523)
..+-.+|...|+. ++|...|+.......-.|+...|...+..+
T Consensus 65 ~~l~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 65 VFYAMVLYNLGRY--EQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHTCH--HHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 7888888999999 999999988776533333344444433333
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.46 E-value=0.0093 Score=47.90 Aligned_cols=92 Identities=9% Similarity=-0.133 Sum_probs=76.3
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYK 103 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~ 103 (523)
.+..+-..+.+.|+++.|...++..++.. ..+...|..+-..+.+.|++++|+..|++..+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--------------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 34445566778999999999999998864 2477889999999999999999999999877643
Q ss_pred HhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 104 ACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 104 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+-+...+..+-..|.+.|++++|...|++
T Consensus 82 -----------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 82 -----------------------PKDIAVHAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33566888888999999999999999988
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.41 E-value=0.0095 Score=48.30 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC--C
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--M 258 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g--~ 258 (523)
...+.-|-..|.+.|++++|...|++..+ | +...|+.+-. .|.+.|++++|++.|++..+.. .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~------------~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAA------------VYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHH------------HHHHhhhHHHHHHHHHHHHHhCccc
Confidence 34566777889999999999999987642 4 5678888888 8899999999999999887632 1
Q ss_pred CCC----HHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 259 QPN----TISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 259 ~p~----~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.++ ..+|..+-.++...|+++.|.+.+...++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 222 2356677778888999999999999887743
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.40 E-value=0.11 Score=49.92 Aligned_cols=217 Identities=11% Similarity=-0.001 Sum_probs=126.2
Q ss_pred ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcC-CchHHHHHHHHhhHcc------------HHH
Q 035847 37 NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG-YYEEIVNLFYLLIDEG------------VYK 103 (523)
Q Consensus 37 ~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g------------ll~ 103 (523)
..++|..+.+.++.... .+..+||.-=..+...| .+++++++++.+.... ++.
T Consensus 69 ~se~AL~lt~~~L~~nP--------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP--------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp CSHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc--------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34567777777776542 34566776555555566 4778888887777654 333
Q ss_pred HhhccC-ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHH--------HHHHHhhhccccccCchhhHhhHhhhh
Q 035847 104 ACSELK-DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRME--------MASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 104 ~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
.+. + +.+++.++++.+++.. +.|..+|+---..+.+.|.++ +++..+++ +
T Consensus 135 ~l~--~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k------------------~ 193 (349)
T 3q7a_A 135 RIS--PQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNE------------------M 193 (349)
T ss_dssp HHC--CSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH------------------H
T ss_pred Hhc--CCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHH------------------H
Confidence 331 3 5677777777776542 446667776655555555555 67776666 2
Q ss_pred hhcCCCCCchhHHHHHHHHHHhcCC-------hHHHHHHHhcCC--C-CChhhHHHHHHhhhhcCCccc-----cchhhc
Q 035847 175 LKKDDLESDLLVNNSLMDFYAKCRY-------LKVAHCKFSKIK--Q-KHLVSWNAMLAGYALGGFREE-----ITGFTQ 239 (523)
Q Consensus 175 ~~~~g~~~d~~~~~~li~~~~k~g~-------~~~A~~vf~~m~--~-~~~~t~~~li~~~~~~g~~~~-----i~~~~~ 239 (523)
++. -..|...|+-.-..+.+.+. ++++.+.++... . .|...|+-+-..+.+.|+... +--+..
T Consensus 194 I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 194 LRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 222 24467777777777777765 577777776654 2 466788876663332222100 000000
Q ss_pred c---CCchHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 240 Y---GDGETALEFFSRMIQTD-----MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 240 ~---g~~~~A~~lf~~M~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
. -...+..++..++...+ -.++.+.+.-+.+.|...|+.++|.++++.+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 00122333333333221 136778888899999999999999999999865
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.38 E-value=0.024 Score=45.30 Aligned_cols=60 Identities=8% Similarity=-0.105 Sum_probs=46.7
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc----hhHHHHHHHHHHhcCChHHHHHH
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD----LLVNNSLMDFYAKCRYLKVAHCK 206 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~~~~~li~~~~k~g~~~~A~~v 206 (523)
.++..+-..|.+.|++++|...|++ .-. ..|+ ..++..+-..|.+.|+.++|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~-------------------~~~--~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~ 98 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRD-------------------LVS--RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT 98 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH--HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH-------------------HHH--HCCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3677788889999999999999988 222 1222 55677788889999999999999
Q ss_pred HhcCC
Q 035847 207 FSKIK 211 (523)
Q Consensus 207 f~~m~ 211 (523)
|+...
T Consensus 99 ~~~~~ 103 (129)
T 2xev_A 99 LQQVA 103 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.35 E-value=0.024 Score=45.35 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-h---hHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-L---LVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-~---~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+-..+.+.|++++|...|++ +++. .|+ . ..+..+-..|.+.|++++|...|+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~------------------~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLS------------------FLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------------------HHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH------------------HHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455667778888888888887 1222 122 2 46667777888888888888888776
Q ss_pred CC--CC----hhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 211 KQ--KH----LVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 211 ~~--~~----~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
.+ |+ ...+..+-. .|.+.|++++|...|++....
T Consensus 66 ~~~~p~~~~~~~~~~~la~------------~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 66 VSRYPTHDKAAGGLLKLGL------------SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHCTTSTTHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCCcccHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHH
Confidence 42 33 344555656 777888888888888887764
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0039 Score=48.61 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=65.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|++.|++..... +.+..++..+-..|.+.|++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~ 56 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------PQNPVGYSNKAMALIKLGEYTQ 56 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhcCHHH
Confidence 34556666677777777777777777665532 4466788888899999999999
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc-------hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD-------LLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d-------~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|...|++ ... +.|+ ...+..+-.++...|+.+.|...|+.++
T Consensus 57 A~~~~~~-------------------al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 57 AIQMCQQ-------------------GLR--YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHH-------------------HHT--SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHH-------------------HHH--hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 9999988 222 3343 4455556666666777776666665543
No 182
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.19 E-value=0.074 Score=54.28 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=119.4
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHH----HhcCCCCCCcchHHHHHHHH
Q 035847 5 NVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLG----MFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 5 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~----~f~~~~~~~~~~~~~li~~~ 80 (523)
++..+|++.... .+.+...|-..+..+.+.|+.+.|..+++..... . .+..+. .|.... ..+..+...+
T Consensus 197 Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~~y~~~~e~~----~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSLYYGLVMDEE----AVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHTTCT----HHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHHHHHhhcchh----HHHHHHHHHH
Confidence 355677777664 2334556766777777889999999999999987 2 222222 111111 0122232222
Q ss_pred HhcC-------CchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhc-CCHHHHHHH
Q 035847 81 NVLG-------YYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKC-GRMEMASGE 152 (523)
Q Consensus 81 ~~~g-------~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~ 152 (523)
.... .......++.. .+....+.++++.|+.+|+.. +.. ..+..+|-.....-.+. ++.+.|..+
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~-----y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRIN-----HLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp C----------CHHHHHHHHHH-----HHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHH-----HHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 1000 00000011111 333444567799999999988 321 12222333222222222 358888888
Q ss_pred hhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCcc
Q 035847 153 FEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFRE 232 (523)
Q Consensus 153 f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~ 232 (523)
|+. .++..+- +...+...++...+.|+.+.|+.+|+...+ ....|...+.
T Consensus 343 fe~------------------al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~--------- 392 (493)
T 2uy1_A 343 FSS------------------GLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLEK-TSRMWDSMIE--------- 392 (493)
T ss_dssp HHH------------------HHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHH---------
T ss_pred HHH------------------HHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHH---------
Confidence 887 2443222 234566788888999999999999999843 5667888877
Q ss_pred ccchhhccCCchHHHHHHHHHHh
Q 035847 233 EITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 233 ~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
--...|+.+.+..+++++.+
T Consensus 393 ---fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 393 ---YEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp ---HHHHHSCHHHHHHHHHHHHH
T ss_pred ---HHHHCCCHHHHHHHHHHHHH
Confidence 55677888888888888764
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.12 E-value=0.0042 Score=49.47 Aligned_cols=83 Identities=11% Similarity=-0.044 Sum_probs=55.4
Q ss_pred CChHHHHHHHHHHHHhc--CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhH
Q 035847 109 KDHRVGKDVYDYMISIK--FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV 186 (523)
Q Consensus 109 ~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~ 186 (523)
|++++|...+...++.+ -+.+..++..+-..|.+.|++++|...|+++ ++. .+-+..+
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------------------l~~--~p~~~~~ 63 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------------------VKQ--FPNHQAL 63 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------HHH--CTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHh--CCCchHH
Confidence 44555555555555432 1224567788888888999999999998881 222 1224667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 187 NNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 187 ~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
+..+-.+|.+.|+.++|...|+...
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888889999999998887653
No 184
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.09 E-value=0.046 Score=52.77 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHh------HHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGI------ALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWR 336 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~------~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~ 336 (523)
..+..+-..+.+.|+++.|...+...++.. |+...+. ..+. .-....|+.+-.+|.+.|++ ++|..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~----~l~~~~~~nla~~~~~~g~~--~~A~~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMAL----AVKNPCHLNIAACLIKLKRY--DEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHH----HHHTHHHHHHHHHHHTTTCC--HHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHH----HHHHHHHHHHHHHHHHcCCH--HHHHH
Confidence 345566677888999999999998887642 2211100 0000 00013788899999999999 99999
Q ss_pred HHHHhHHhcCCcc-CHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC
Q 035847 337 YFEMMKKEYNMEP-AMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA 384 (523)
Q Consensus 337 ~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 384 (523)
.|+...+. .| +...|..+-.+|...|++++|...+++. .+.|+..
T Consensus 252 ~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 252 HCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 99998865 45 5788999999999999999999999985 4555544
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.05 E-value=0.033 Score=56.27 Aligned_cols=128 Identities=10% Similarity=0.003 Sum_probs=93.3
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCC-------------cchHHHHHHHHHhcCCchHHH
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERN-------------VFSWTSMMGMYNVLGYYEEIV 90 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~ 90 (523)
.|..+-..+.+.|+++.|...+...++..-. .++ ..+|..+-.+|.+.|++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM------------EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc------------cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5666667788899999999999998875320 010 467777777888888888888
Q ss_pred HHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhH
Q 035847 91 NLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEI 170 (523)
Q Consensus 91 ~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~ 170 (523)
..|++..+.. +.+...|..+-.+|.+.|++++|...|++
T Consensus 338 ~~~~~al~~~--------------------------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~--------------- 376 (457)
T 1kt0_A 338 ECCDKALGLD--------------------------SANEKGLYRRGEAQLLMNEFESAKGDFEK--------------- 376 (457)
T ss_dssp HHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------
T ss_pred HHHHHHHhcC--------------------------CccHHHHHHHHHHHHHccCHHHHHHHHHH---------------
Confidence 8887766532 34677888889999999999999999998
Q ss_pred hhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHH-HHhcC
Q 035847 171 HPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHC-KFSKI 210 (523)
Q Consensus 171 ~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~-vf~~m 210 (523)
... +.| +..++..+-..+.+.|+.++|.+ ++..|
T Consensus 377 ----al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 377 ----VLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----HHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 334 45688888888888888887764 44544
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.04 E-value=0.059 Score=54.42 Aligned_cols=118 Identities=8% Similarity=0.012 Sum_probs=95.1
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN----------------TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGV 299 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~ 299 (523)
.|.+.|++++|+..|++..+. .|+ ...|..+-.++.+.|++++|...+...++..
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------- 347 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------- 347 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------
T ss_pred HHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 888999999999999998873 233 4778888889999999999999999998742
Q ss_pred HhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH-HHHhC
Q 035847 300 GIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN-FMKKM 377 (523)
Q Consensus 300 ~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~-~~~~m 377 (523)
+.+...|..+-.+|...|+. ++|...|+...+ +.|+ ...+..+..++.+.|+.++|.+ ++.+|
T Consensus 348 ----------p~~~~a~~~~g~a~~~~g~~--~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 ----------SANEKGLYRRGEAQLLMNEF--ESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----------CccHHHHHHHHHHHHHccCH--HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788899999999999 999999998875 4565 5778888888999999988775 45666
No 187
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.91 E-value=0.25 Score=47.19 Aligned_cols=189 Identities=9% Similarity=-0.040 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC--chHHHHHHHHhhHccHHHHhhccCChHHHH
Q 035847 38 LELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY--YEEIVNLFYLLIDEGVYKACSELKDHRVGK 115 (523)
Q Consensus 38 ~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~gll~~~~~~~~~~~a~ 115 (523)
++.+..+++.+.... ..+..+|+----.+.+.|. +++++.+++.+.+..
T Consensus 90 l~~EL~~~~~~L~~~--------------PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--------------- 140 (331)
T 3dss_A 90 VKAELGFLESCLRVN--------------PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--------------- 140 (331)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---------------
Confidence 455556666665543 3466777766555556563 677777777776654
Q ss_pred HHHHHHHHhcCCCCceeHhHHHHHHHhcCC-HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 116 DVYDYMISIKFEGNACVKRPVLDMFIKCGR-MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 116 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
+.|..+|+---..+.+.|. +++++..+++ +-. --..|...|+-.-..+
T Consensus 141 -----------prNy~AW~~R~~vl~~l~~~~~eel~~~~~-------------------~I~-~~p~N~SAW~~R~~ll 189 (331)
T 3dss_A 141 -----------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS-------------------LIT-RNFSNYSSWHYRSCLL 189 (331)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH-------------------HHH-HCSCCHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH-------------------HHH-HCCCCHHHHHHHHHHH
Confidence 5566777777666777777 5777777777 222 1234555666555555
Q ss_pred Hhc--------------CChHHHHHHHhcCC--CC-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC
Q 035847 195 AKC--------------RYLKVAHCKFSKIK--QK-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD 257 (523)
Q Consensus 195 ~k~--------------g~~~~A~~vf~~m~--~~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g 257 (523)
.+. +.++++.+.++... .| |..+|+-+-..+.+.-....+ .-.+.+.++++++.++++.+.
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~-~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL-SVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC-CHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc-chHHHHHHHHHHHHHHHHHhh-
Confidence 444 34667777776653 34 667787544311111000000 001124578999999999874
Q ss_pred CCCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHH
Q 035847 258 MQPNTISLSG-----VLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 258 ~~p~~~t~~~-----ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.||. .|+. ++.+....+..++....++.+++
T Consensus 268 -~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 268 -EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp -CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred -Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4654 3332 22233345666677777777775
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.80 E-value=1 Score=43.03 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=89.7
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccCC-chHHHHHHHHHH
Q 035847 181 ESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGD-GETALEFFSRMI 254 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g--~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~-~~~A~~lf~~M~ 254 (523)
+-+..+|+.--..+.+.| +++++..+++.+.+ +|-.+|+---- ...+.|. ++++++.+..+.
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~------------vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF------------VAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHhCcCHHHHHHHHHHHH
Confidence 346678877777777777 48899999998864 56677877655 5556677 589999999999
Q ss_pred hcCCCCCHHHHHHHHHHhhcc--------------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHH
Q 035847 255 QTDMQPNTISLSGVLAACAQV--------------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLI 320 (523)
Q Consensus 255 ~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li 320 (523)
+..+ -|...|+-.-..+.+. +.++++.+.+...+... +-|...|+-+-
T Consensus 173 ~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-----------------P~d~SaW~Y~r 234 (331)
T 3dss_A 173 TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----------------PNDQSAWFYHR 234 (331)
T ss_dssp HHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-----------------TTCHHHHHHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-----------------CCCHHHHHHHH
Confidence 8653 3666666554444443 33566666666665532 22445565443
Q ss_pred HHHHhc-----------CCCchHHHHHHHHHhHHhcCCccCH
Q 035847 321 DMYGRC-----------GAIQKNEGWRYFEMMKKEYNMEPAM 351 (523)
Q Consensus 321 ~~~~~~-----------g~~~~~~a~~~~~~m~~~~g~~p~~ 351 (523)
..+.+. +.+ +++++.++++.+. .||.
T Consensus 235 ~ll~~~~~~~~~~~~~~~~l--~~el~~~~elle~---~pd~ 271 (331)
T 3dss_A 235 WLLGAGSGRCELSVEKSTVL--QSELESCKELQEL---EPEN 271 (331)
T ss_dssp HHHHSSSCGGGCCHHHHHHH--HHHHHHHHHHHHH---CTTC
T ss_pred HHHHhccCccccchHHHHHH--HHHHHHHHHHHhh---Cccc
Confidence 333333 345 8899999999865 6774
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.70 E-value=0.043 Score=52.98 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=64.4
Q ss_pred hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCC-------CCcchHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 24 TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPE-------RNVFSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 24 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
.+..+-..+.+.|+++.|...+...+...- +... +..... -....|+.+-..|.+.|++++|+..|++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~~--~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDFM--FQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHHH--HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cchh--hhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666778889999999999998876531 1000 000000 00014555555555555555555555544
Q ss_pred hHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhh
Q 035847 97 IDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLK 176 (523)
Q Consensus 97 ~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~ 176 (523)
.+ .. +.+...|..+-.+|...|++++|...|++ ..
T Consensus 257 l~-------------------------~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~-------------------al 291 (338)
T 2if4_A 257 LT-------------------------EE-EKNPKALFRRGKAKAELGQMDSARDDFRK-------------------AQ 291 (338)
T ss_dssp HH-------------------------HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH-------------------TT
T ss_pred HH-------------------------hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-------------------HH
Confidence 43 31 34667888899999999999999999998 22
Q ss_pred cCCCCC-chhHHHHHHHHH-HhcCChHHHHHHHhcCC
Q 035847 177 KDDLES-DLLVNNSLMDFY-AKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 177 ~~g~~~-d~~~~~~li~~~-~k~g~~~~A~~vf~~m~ 211 (523)
. +.| +..++..|.... ...+..+.+..+|..|.
T Consensus 292 ~--l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l 326 (338)
T 2if4_A 292 K--YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326 (338)
T ss_dssp C------------------------------------
T ss_pred H--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 233 233444444442 23455667777777664
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.70 E-value=0.037 Score=46.62 Aligned_cols=107 Identities=8% Similarity=0.013 Sum_probs=72.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC---------CCCchhHHHHHHHHHHhcCChHH
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD---------LESDLLVNNSLMDFYAKCRYLKV 202 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~d~~~~~~li~~~~k~g~~~~ 202 (523)
.+...-..+.+.|++++|...|.++ ..+......... -..+..+|..+-.+|.+.|++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~a-----------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~ 81 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDA-----------LTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHE 81 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4556677888999999999999982 111111100000 01134577788888888899888
Q ss_pred HHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH
Q 035847 203 AHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI 263 (523)
Q Consensus 203 A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 263 (523)
|...++...+ | +...|..+-. +|...|++++|+..|+..... .|+..
T Consensus 82 A~~~~~~al~~~p~~~~a~~~~g~------------~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 82 AEETSSEVLKREETNEKALFRRAK------------ARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHH------------HHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 8888876542 3 4567777777 788888888898888887764 45543
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.66 E-value=0.065 Score=52.43 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhH----------------cc---------HHHHhhccCChHHHHHHHHHHHHhc
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLID----------------EG---------VYKACSELKDHRVGKDVYDYMISIK 125 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----------------~g---------ll~~~~~~~~~~~a~~~~~~m~~~g 125 (523)
..|..+-..+.+.|++++|++.|++..+ .. +-.++.+.|++++|.+.++..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3477778888999999999999988775 22 5556677889999999999888753
Q ss_pred CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHH
Q 035847 126 FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAH 204 (523)
Q Consensus 126 ~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~ 204 (523)
+.+...|..+-.+|.+.|++++|...|++ ... +.| +..++..+-..+.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~-------------------Al~--l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKK-------------------AQE--IAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH--HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHH-------------------HHH--hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23566778888889999999999999888 222 123 4566777777777777776665
Q ss_pred H
Q 035847 205 C 205 (523)
Q Consensus 205 ~ 205 (523)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.48 E-value=0.044 Score=46.12 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=73.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHH
Q 035847 70 VFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMA 149 (523)
Q Consensus 70 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 149 (523)
+..|...-..+.+.|++++|+..|.+.... +.......+..... ...+ -+.+..+|..+-.+|.+.|++++|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~--~~~~~~~~~~~~~~--~~~~----~~~~~~~~~nla~~~~~~~~~~~A 82 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR--LDTLILREKPGEPE--WVEL----DRKNIPLYANMSQCYLNIGDLHEA 82 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHHHTSCTTSHH--HHHH----HHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhcccCCCCHHH--HHHH----HHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345666677788888888888888775541 11111100000000 0000 012345788888899999999999
Q ss_pred HHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 150 SGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 150 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
...++++ ++. -+.+...|..+-.+|...|++++|...|+...
T Consensus 83 ~~~~~~a------------------l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 83 EETSSEV------------------LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHH------------------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH------------------Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999881 222 13357788888999999999999999998754
No 193
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.40 E-value=0.048 Score=40.27 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..+.+.|++++|+..|++..... +.+..++..+-..|.+.|++++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~ 61 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------PNNAEAWYNLGNAYYKQGDYDE 61 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHHhhHHH
Confidence 34567777777888888888888887765532 3356678888899999999999
Q ss_pred HHHHhhh
Q 035847 149 ASGEFEE 155 (523)
Q Consensus 149 A~~~f~~ 155 (523)
|...|++
T Consensus 62 A~~~~~~ 68 (91)
T 1na3_A 62 AIEYYQK 68 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.17 E-value=0.17 Score=39.50 Aligned_cols=80 Identities=6% Similarity=0.001 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
++|+..|++..+.. +.+...+..+-..+...|+++.|...+....+.. ..+...|..+-..|.+.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------------PTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------------CCcHHHHHHHHHHHHHc
Confidence 46788888877643 2356678888888889999999999999998764 23567889999999999
Q ss_pred CCchHHHHHHHHhhH
Q 035847 84 GYYEEIVNLFYLLID 98 (523)
Q Consensus 84 g~~~~A~~l~~~m~~ 98 (523)
|++++|+..|++...
T Consensus 67 g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 67 GDRAGARQAWESGLA 81 (115)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988654
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.16 E-value=0.11 Score=50.73 Aligned_cols=115 Identities=8% Similarity=0.066 Sum_probs=82.7
Q ss_pred hhhccCCchHHHHHHHHHHhc--------------CCCC-CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQT--------------DMQP-NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVG 300 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~--------------g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~ 300 (523)
.+.+.|++++|++.|++..+. ...| +..+|..+-.++.+.|++++|.+.++..++.. |
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p----- 304 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--P----- 304 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--T-----
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--c-----
Confidence 788999999999999988751 0223 34567777777888888888888888877632 1
Q ss_pred hHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHH
Q 035847 301 IALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 301 ~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 372 (523)
.+...|..+-.+|...|+. ++|...|++..+. .|+ ...+..+-.++.+.++.+++.+
T Consensus 305 ----------~~~~a~~~lg~~~~~~g~~--~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 ----------SNTKALYRRAQGWQGLKEY--DQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHHHHccCH--HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455677778888888888 8888888887754 453 5566666667777777766654
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.024 Score=43.84 Aligned_cols=95 Identities=2% Similarity=-0.085 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 035847 261 NTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEM 340 (523)
Q Consensus 261 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~ 340 (523)
+...+..+-..+...|++++|.+.+...++.. +.+...|..+-.+|...|+. ++|...|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~ 63 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----------------PQNPVGYSNKAMALIKLGEY--TQAIQMCQQ 63 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHHHHTTCH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhcCH--HHHHHHHHH
Confidence 44566667777888888888888888887642 12456777888888888988 889988888
Q ss_pred hHHhcCCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 341 MKKEYNMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 341 m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
..+ +.|+ ...+..+-.++...|+.++|.+.++++
T Consensus 64 al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 64 GLR---YTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHT---SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHH---hCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 764 3565 344445555555555555555444443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.94 E-value=0.31 Score=39.84 Aligned_cols=110 Identities=8% Similarity=-0.015 Sum_probs=84.5
Q ss_pred hccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHH
Q 035847 238 TQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWN 317 (523)
Q Consensus 238 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n 317 (523)
.-.+++++|++.|++..+.| .|+.. |-..|...+.++.|.+.+....+.| +...++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g-------------------~~~a~~ 61 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN-------------------SGNGCR 61 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-------------------CHHHHH
T ss_pred CCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-------------------CHHHHH
Confidence 34457899999999999888 44444 5556777788899999999998876 445566
Q ss_pred HHHHHHHh----cCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHh----hCCHHHHHHHHHhC
Q 035847 318 SLIDMYGR----CGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLAR----AGQFDDTLNFMKKM 377 (523)
Q Consensus 318 ~li~~~~~----~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m 377 (523)
.|-..|.. .++. ++|..+|+...+. | +...+..|-..|.. .++.++|.+++++-
T Consensus 62 ~Lg~~y~~G~g~~~d~--~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 62 FLGDFYENGKYVKKDL--RKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHCSSSCCCH--HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCccH--HHHHHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 66666766 6778 9999999998875 5 46667777777777 78999999988773
No 198
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.85 E-value=0.22 Score=49.64 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhHHh----cC-CccC-HhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 315 VWNSLIDMYGRCGAIQKNEGWRYFEMMKKE----YN-MEPA-MEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 315 ~~n~li~~~~~~g~~~~~~a~~~~~~m~~~----~g-~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+++.|...|...|++ ++|..++++...- +| -.|+ ..+|+.|-..|...|++++|..++++.
T Consensus 331 ~~~~L~~~y~~~g~~--~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 331 VLDCAMDACINLGLL--EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccH--HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444444444 4444444433321 12 3344 477888889999999999999888774
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.70 E-value=0.16 Score=39.62 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMY 323 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~ 323 (523)
++|++.|++..+.. +-+...+..+-..+...|++++|...++..++.. +.+...|..+-..|
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~ 63 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-----------------PTYSVAWKWLGKTL 63 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----------------CCcHHHHHHHHHHH
Confidence 35677777776642 2245667777777888888888888888877642 12345677778888
Q ss_pred HhcCCCchHHHHHHHHHhHHh
Q 035847 324 GRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 324 ~~~g~~~~~~a~~~~~~m~~~ 344 (523)
...|+. ++|...|+...+.
T Consensus 64 ~~~g~~--~~A~~~~~~al~~ 82 (115)
T 2kat_A 64 QGQGDR--AGARQAWESGLAA 82 (115)
T ss_dssp HHHTCH--HHHHHHHHHHHHH
T ss_pred HHcCCH--HHHHHHHHHHHHh
Confidence 888888 8888888877654
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.68 E-value=0.18 Score=42.42 Aligned_cols=104 Identities=8% Similarity=-0.023 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHhcCC-chHHHHhHHHhhhCC-CCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 264 SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQ-LSTGVGIALISIQGL-GTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 264 t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~-~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
.+...-..+.+.|++++|...++..++..-. |+. +.... ..+...|+.+-.++.+.|++ ++|+..++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-------~a~~~~~~~a~a~~n~g~al~~Lgr~--~eAl~~~~kA 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-------EAFDHAGFDAFCHAGLAEALAGLRSF--DEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-------SCCCHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-------hhhhhccchHHHHHHHHHHHHHCCCH--HHHHHHHHHH
Confidence 3444555667788899999888888774321 100 00000 00223899999999999999 9999999887
Q ss_pred HHh----cCCccC-HhHH----HHHHHHHHhhCCHHHHHHHHHh
Q 035847 342 KKE----YNMEPA-MEQY----CCMVDLLARAGQFDDTLNFMKK 376 (523)
Q Consensus 342 ~~~----~g~~p~-~~ty----~~li~~~~~~g~~~~A~~~~~~ 376 (523)
.+. -.+.|+ ...| ...-.++...|++++|+..+++
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 742 112776 4567 7788888899999999888776
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.67 E-value=0.033 Score=46.94 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=68.3
Q ss_pred eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 132 VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLE-SDLLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 132 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~d~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
.+...-..+.+.|++++|...|+++.--.+...+ +. ..... .+...|+.+-.++.+.|++++|...++..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~~--------a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-EE--------AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-TS--------CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-hh--------hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667788899999999999982100000000 00 00000 12348999999999999999998888765
Q ss_pred C---------CCC-hhhH----HHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 211 K---------QKH-LVSW----NAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 211 ~---------~~~-~~t~----~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
. .|| ...| ...-. ++...|++++|+..|++..+
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~------------aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRAL------------ALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHH------------HHHHCCCHHHHHHHHHHHHh
Confidence 3 343 2355 55555 88899999999999998765
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.63 E-value=0.037 Score=55.33 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC----------CCCh-hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 184 LLVNNSLMDFYAKCRYLKVAHCKFSKIK----------QKHL-VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 184 ~~~~~~li~~~~k~g~~~~A~~vf~~m~----------~~~~-~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
..+++.|...|...|++++|..++++.. .|++ .++|.|-. .|...|++++|+.+|++
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~------------~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR------------LYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH------------HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH------------HHHhccCHHHHHHHHHH
Confidence 5689999999999999999999998764 2444 47888988 99999999999999988
Q ss_pred HHh
Q 035847 253 MIQ 255 (523)
Q Consensus 253 M~~ 255 (523)
..+
T Consensus 408 Al~ 410 (433)
T 3qww_A 408 AIA 410 (433)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.57 E-value=0.083 Score=40.38 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHH
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEM 148 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 148 (523)
+...|..+-..|.+.|++++|+..|++..+.. +.+..+|..+-..|.+.|++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------p~~~~a~~~lg~~~~~~g~~~~ 59 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--------------------------PDYVGTYYHLGKLYERLDRTDD 59 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCTHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------CCcHHHHHHHHHHHHHcCCHHH
Confidence 56778888888999999999999998877643 3457788999999999999999
Q ss_pred HHHHhhh
Q 035847 149 ASGEFEE 155 (523)
Q Consensus 149 A~~~f~~ 155 (523)
|...|++
T Consensus 60 A~~~~~~ 66 (100)
T 3ma5_A 60 AIDTYAQ 66 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 204
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.49 E-value=0.45 Score=51.37 Aligned_cols=142 Identities=12% Similarity=0.036 Sum_probs=92.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSG 267 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ 267 (523)
..++..+-+.|..+.|.++.+. + ..- .. ...+.|++++|+++.+.+ .+...|..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---~-~~~----f~------------~~l~~~~~~~A~~~~~~~------~~~~~W~~ 686 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---Q-DQK----FE------------LALKVGQLTLARDLLTDE------SAEMKWRA 686 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---H-HHH----HH------------HHHHHTCHHHHHHHHTTC------CCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC---c-chh----ee------------hhhhcCCHHHHHHHHHhh------CcHhHHHH
Confidence 6777788888888888876642 1 111 12 334578888888876543 46678888
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCC
Q 035847 268 VLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNM 347 (523)
Q Consensus 268 ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~ 347 (523)
+-..|.+.++++.|++.|..+.. |..+...|...|+. +...++-+..... |
T Consensus 687 la~~al~~~~~~~A~~~y~~~~d-------------------------~~~l~~l~~~~~~~--~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNAHD-------------------------LESLFLLHSSFNNK--EGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTC-------------------------HHHHHHHHHHTTCH--HHHHHHHHHHHHT-T-
T ss_pred HHHHHHHcCCHHHHHHHHHHccC-------------------------hhhhHHHHHHcCCH--HHHHHHHHHHHHc-C-
Confidence 88888888888888888877643 44555566666665 5444444333332 3
Q ss_pred ccCHhHHHHHHHHHHhhCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q 035847 348 EPAMEQYCCMVDLLARAGQFDDTLNFMKKMPFEPSSAEPCNPDIAEHAARH 398 (523)
Q Consensus 348 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~~~~~~~~~~~ 398 (523)
-++.-..+|.+.|++++|.+++.++ +..+.|...++.
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~---------~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS---------QRFSEAAFLGST 774 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT---------TCHHHHHHHHHH
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc---------CChHHHHHHHHH
Confidence 2344455677788888888888887 456666555543
No 205
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.44 E-value=0.92 Score=36.62 Aligned_cols=74 Identities=8% Similarity=0.011 Sum_probs=57.8
Q ss_pred HHHhhhhcCCccc-----cchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCc
Q 035847 221 MLAGYALGGFREE-----ITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 221 li~~~~~~g~~~~-----i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
++.+|++.+...+ +......|+-++-.+++.++.. +.+|++.....+-.||.+.|+..++.+++.+.-+.|++-
T Consensus 80 Vi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kE 158 (172)
T 1wy6_A 80 VVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKE 158 (172)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHH
Confidence 4444444444444 4478889999999999999644 467888889999999999999999999999999998753
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.36 E-value=0.35 Score=36.75 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred CcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc
Q 035847 21 CTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG 100 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 100 (523)
+...+..+-.++...|+++.|...++..++... .+...|..+-..|.+.|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-- 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--------------DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE-- 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Confidence 455677788888899999999999999998752 3577899999999999999999999988554
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhc
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIK 125 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g 125 (523)
..-..++...+.++-..+.+.+
T Consensus 70 ---l~~~~~~~~~~~~l~~~l~~~~ 91 (100)
T 3ma5_A 70 ---VAREEGTQKDLSELQDAKLKAE 91 (100)
T ss_dssp ---HHHHHSCHHHHHHHHHHHHHHH
T ss_pred ---hhhcCCchhHHHHHHHHHHHcc
Confidence 2344556665655555555444
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.15 E-value=0.17 Score=50.50 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=69.3
Q ss_pred ccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 107 ELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
..|++++|..++++.++.. +.|+ ..+++.|...|...|++++|..++++ +.++.....-.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~-----------aL~i~~~~lG~-- 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK-----------IIKPYSKHYPV-- 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHHSCS--
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHHcCC--
Confidence 4678899999999887642 3343 45799999999999999999999998 23333332211
Q ss_pred CCCc-hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 180 LESD-LLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 180 ~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
-.|+ ..+++.|-..|...|++++|..++++.
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 2444 558999999999999999999998863
No 208
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.10 E-value=3.6 Score=38.98 Aligned_cols=135 Identities=11% Similarity=0.012 Sum_probs=85.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHH----HHHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGK----DVYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~----~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..|.++..-|.+.+++++|++++.. -...+.+.|....|- -+.+...+.++++|.....-|+..+.....-
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 4577888999999999999998754 222333445555544 4456667788889988888888877776543
Q ss_pred HHHHHHhhhccccccCchhhHhhHhhhhhhcC-CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 147 EMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD-DLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+-.+.-|-. ....+-.+.. ...-|......+-..|.+.+++.+|+.-|-.-.++....+..|+.
T Consensus 111 ~p~r~~fi~-------------~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 111 EPVRKRFVK-------------EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEY 175 (336)
T ss_dssp CHHHHHHHH-------------HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred CcHHHHHHH-------------HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHH
Confidence 322222221 0111112220 133466777888899999999999999985322233356666655
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.80 E-value=1.5 Score=47.30 Aligned_cols=102 Identities=12% Similarity=0.024 Sum_probs=67.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 035847 134 RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQK 213 (523)
Q Consensus 134 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~ 213 (523)
..++..+.+.|..+.|+++.++ ... -......+|+++.|.++.+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-------------------~~~------------~f~~~l~~~~~~~A~~~~~~~~-- 679 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-------------------QDQ------------KFELALKVGQLTLARDLLTDES-- 679 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-------------------HHH------------HHHHHHHHTCHHHHHHHHTTCC--
T ss_pred HHHHHHHHhCCChHHheecCCC-------------------cch------------heehhhhcCCHHHHHHHHHhhC--
Confidence 6777888888888888877654 111 1244567899999998887764
Q ss_pred ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 035847 214 HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVL 289 (523)
Q Consensus 214 ~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 289 (523)
+...|..+-. .+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+...
T Consensus 680 ~~~~W~~la~------------~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 680 AEMKWRALGD------------ASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp CHHHHHHHHH------------HHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHhHHHHHHH------------HHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 4568888888 88888888888888887743 2233333444555555554443333
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.67 E-value=0.23 Score=49.51 Aligned_cols=97 Identities=10% Similarity=-0.115 Sum_probs=72.8
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhc---CCCC----ceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhh
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIK---FEGN----ACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPH 173 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~ 173 (523)
.+..+.+.|++++|..++++.++.- +.|+ ..+++.|...|...|++++|..++++ +..+...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~-----------~L~i~~~ 361 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR-----------TMEPYRI 361 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----------HHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH-----------HHHhHHH
Confidence 4555667889999999999888542 3333 45789999999999999999999998 2333332
Q ss_pred hhhcCCCCCc-hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 174 HLKKDDLESD-LLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 174 ~~~~~g~~~d-~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..- ...|+ ..+++.|-..|...|++++|..++++.
T Consensus 362 ~lg--~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 362 FFP--GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HSC--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 221 23444 558899999999999999999988763
No 211
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.66 E-value=0.3 Score=35.66 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=52.5
Q ss_pred cchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHc
Q 035847 22 TVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 22 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 99 (523)
...+..+-..+...|+++.|...+....+.. ..+..+|..+-..|.+.|++++|+..|++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3466677777888999999999999988764 235678888999999999999999999887653
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.60 E-value=1.4 Score=35.73 Aligned_cols=104 Identities=8% Similarity=-0.135 Sum_probs=61.0
Q ss_pred hhHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 3 IKNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 3 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
+++|+..|++-.+.|. |+ .. |-..+...+..+.|...+....+.| +..++..|=..|.+
T Consensus 11 ~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g----------------~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 11 LKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN----------------SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHc
Confidence 3567777776666652 22 22 4444445556666666666666654 34555555555555
Q ss_pred ----cCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHh----cCCHHHHHHHhh
Q 035847 83 ----LGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIK----CGRMEMASGEFE 154 (523)
Q Consensus 83 ----~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~f~ 154 (523)
.+++++|++.|++-.+.| +...+..|-.+|.. .++.++|...|+
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~g----------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcCC----------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 556666666665554433 34455556666666 677777777777
Q ss_pred h
Q 035847 155 E 155 (523)
Q Consensus 155 ~ 155 (523)
+
T Consensus 122 ~ 122 (138)
T 1klx_A 122 K 122 (138)
T ss_dssp H
T ss_pred H
Confidence 7
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=92.94 E-value=1.8 Score=44.81 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCC----------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 111 HRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGR----------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~----------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
-++|.+.++.++.. .| +..+|+.-=..+.+.|+ +++++..+++ +++.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~------------------~l~~-- 102 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES------------------CLRV-- 102 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH------------------HHHH--
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHH------------------HHHh--
Confidence 34556666666654 34 34566655555555555 7788888877 2332
Q ss_pred CCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCccccchhhccC-CchHHHHHHHHH
Q 035847 180 LESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYG-DGETALEFFSRM 253 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g--~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g-~~~~A~~lf~~M 253 (523)
-.-+..+|+.--..+.+.| +++++...++.+.+ +|-..|+---- .+.+.| .++++++.++++
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~------------~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRF------------VAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTCCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHH------------HHHHcCCChHHHHHHHHHH
Confidence 2345667887777788888 67999999998864 57778887666 555677 789999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhhcc--------------CChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHH
Q 035847 254 IQTDMQPNTISLSGVLAACAQV--------------KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSL 319 (523)
Q Consensus 254 ~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~l 319 (523)
.+.... |...|+-.-..+.+. +.++++.+.+...++.. +-|...|+-+
T Consensus 171 I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-----------------P~~~saW~y~ 232 (567)
T 1dce_A 171 ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-----------------PNDQSAWFYH 232 (567)
T ss_dssp TTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-----------------SSCSHHHHHH
T ss_pred HHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-----------------CCCccHHHHH
Confidence 875432 666777655555442 34566777666666532 2366778877
Q ss_pred HHHHHhcCCC
Q 035847 320 IDMYGRCGAI 329 (523)
Q Consensus 320 i~~~~~~g~~ 329 (523)
-..+.+.++.
T Consensus 233 ~~ll~~~~~~ 242 (567)
T 1dce_A 233 RWLLGRAEPH 242 (567)
T ss_dssp HHHHSCCCCC
T ss_pred HHHHhcCCCc
Confidence 7777777664
No 214
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.90 E-value=4.8 Score=41.51 Aligned_cols=178 Identities=7% Similarity=-0.079 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC----------chHHHHHHHHhhHccHHHHhhc
Q 035847 38 LELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY----------YEEIVNLFYLLIDEGVYKACSE 107 (523)
Q Consensus 38 ~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~gll~~~~~ 107 (523)
-++|...++.++.... .+..+|+.-=..+.+.|+ ++++++.++.+.+..
T Consensus 45 ~eeal~~~~~~l~~nP--------------~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~------- 103 (567)
T 1dce_A 45 DESVLELTSQILGANP--------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------- 103 (567)
T ss_dssp SHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHCc--------------hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-------
Confidence 4566777777776542 355667654444444444 566666666655432
Q ss_pred cCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC--CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG--RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL 185 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~ 185 (523)
+-+..+|+.--..+.+.| ++++++..+++ +-. --..|-.
T Consensus 104 -------------------pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k-------------------~l~-~d~~N~~ 144 (567)
T 1dce_A 104 -------------------PKSYGTWHHRCWLLSRLPEPNWARELELCAR-------------------FLE-ADERNFH 144 (567)
T ss_dssp -------------------TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH-------------------HHH-HCTTCHH
T ss_pred -------------------CCCHHHHHHHHHHHHHcccccHHHHHHHHHH-------------------HHh-hcccccc
Confidence 456678888777888888 67999999988 322 1234677
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHhcCCC---CChhhHHHHHHhhhhcCCcccc--chhhccCCchHHHHHHHHHHhcCCC
Q 035847 186 VNNSLMDFYAKCR-YLKVAHCKFSKIKQ---KHLVSWNAMLAGYALGGFREEI--TGFTQYGDGETALEFFSRMIQTDMQ 259 (523)
Q Consensus 186 ~~~~li~~~~k~g-~~~~A~~vf~~m~~---~~~~t~~~li~~~~~~g~~~~i--~~~~~~g~~~~A~~lf~~M~~~g~~ 259 (523)
.|+---..+.+.| ..+++.+.++.+.+ .|..+|+-.-..+.+.+...+- .+-...+.+++|++.+++.... .
T Consensus 145 aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~ 222 (567)
T 1dce_A 145 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--D 222 (567)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--C
Confidence 7887777778888 88999999998876 3556788776633321110000 0001125578999999888764 3
Q ss_pred C-CHHHHHHHHHHhhccCC
Q 035847 260 P-NTISLSGVLAACAQVKG 277 (523)
Q Consensus 260 p-~~~t~~~ll~a~~~~g~ 277 (523)
| |...|.-.-..+.+.+.
T Consensus 223 P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 223 PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SSCSHHHHHHHHHHSCCCC
T ss_pred CCCccHHHHHHHHHhcCCC
Confidence 4 56677766666666655
No 215
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.69 E-value=5.7 Score=37.30 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=85.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHH----HHHHHHHhcCCCCceeHhHHHHHHHhcCCH
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKD----VYDYMISIKFEGNACVKRPVLDMFIKCGRM 146 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 146 (523)
..|.++..-|.+.+++++|++++.. -...+.+.|+...|-+ +.+...+.+.++|.....-|+..+.....-
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 5688899999999999999999755 2223344566655554 456666678888888888888777664322
Q ss_pred HHH-HHHhhhccccccCchhhHhhHhhhhhhcCC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 147 EMA-SGEFEEKDFSNLSLLKHGKEIHPHHLKKDD-LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 147 ~~A-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+.. .++.++ ...+-.+..+ ..-|......+-..|.+.|++.+|+.-|-.-...|...+..++.
T Consensus 109 ~~~r~~fi~~--------------ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 109 EPNLKDVITG--------------MNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp CTTHHHHHHH--------------HHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHH--------------HHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 211 112222 1111111211 22367788889999999999999999886332224555665555
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.46 E-value=2.7 Score=40.54 Aligned_cols=72 Identities=6% Similarity=-0.057 Sum_probs=56.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCC
Q 035847 181 ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK--QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDM 258 (523)
Q Consensus 181 ~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~--~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~ 258 (523)
..+..+|.++-..+...|++++|...+++.. .|+...|..+-. .+.-.|++++|.+.|++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~------------~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGK------------VYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHHH--
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHhc--
Confidence 5577788888777777899999999999875 477666655555 777899999999999988774
Q ss_pred CCCHHHHH
Q 035847 259 QPNTISLS 266 (523)
Q Consensus 259 ~p~~~t~~ 266 (523)
.|...||.
T Consensus 340 ~P~~~t~~ 347 (372)
T 3ly7_A 340 RPGANTLY 347 (372)
T ss_dssp SCSHHHHH
T ss_pred CCCcChHH
Confidence 57777765
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.20 E-value=0.17 Score=38.08 Aligned_cols=82 Identities=16% Similarity=0.119 Sum_probs=56.3
Q ss_pred HHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-Hh-HHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCCC-CC--CCHHHH
Q 035847 319 LIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-ME-QYCCMVDLLARAGQFDDTLNFMKKM-PFEPSSA-EP--CNPDIA 392 (523)
Q Consensus 319 li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~--~~~~~~ 392 (523)
....+...|+. ++|...|+...+. .|+ .. .|..+-.+|.+.|++++|.+.+++. ...|+.. .+ +.+..+
T Consensus 6 ~a~~~~~~~~~--~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a 80 (99)
T 2kc7_A 6 TIKELINQGDI--ENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDI 80 (99)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHcCCH--HHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34567788999 9999999998875 454 46 7888889999999999999998874 3445444 11 333444
Q ss_pred HHHHHHHHhhCCC
Q 035847 393 EHAARHLFELEPL 405 (523)
Q Consensus 393 ~~~~~~l~~~~~~ 405 (523)
....+++....|.
T Consensus 81 ~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 81 LNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHCCTTHHHHC
T ss_pred HHHHHHHhccCcc
Confidence 4444444444443
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=90.06 E-value=0.7 Score=38.72 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.+.+++|.+.++..++.. ..+...|+.+=.++.+.++++.+.+... .+++|
T Consensus 15 ~~~feeA~~~~~~Ai~l~--------------P~~aea~~n~G~~l~~l~~~~~g~~al~---------------~~~eA 65 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--------------PLDADNLTRWGGVLLELSQFHSISDAKQ---------------MIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------HHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--------------CCCHHHHHHHHHHHHHhcccchhhhhHh---------------HHHHH
Confidence 345777888888777764 3477888888888888777653333221 13445
Q ss_pred HHHHHHHHHhcCCC-CceeHhHHHHHHHhcC-----------CHHHHHHHhhh
Q 035847 115 KDVYDYMISIKFEG-NACVKRPVLDMFIKCG-----------RMEMASGEFEE 155 (523)
Q Consensus 115 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g-----------~~~~A~~~f~~ 155 (523)
...|++.++. .| +..+|..+-.+|...| ++++|...|++
T Consensus 66 i~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 66 ITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHH
Confidence 5555555554 45 5668888999998774 78889888888
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.00 E-value=2.2 Score=36.36 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=73.4
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcch
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFV 315 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~ 315 (523)
-..+.|+++.|.++-+++ -+...|..|-+.+...|+++.|++.|.....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------------------- 62 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------------------- 62 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------------------
Confidence 345689999999998876 3688999999999999999999999877643
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
|..+.--|.-.|+. +.-.++ .++....| -++.-...+.-.|+++++.+++.+.+
T Consensus 63 ~~~L~~Ly~~tg~~--e~L~kl-a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 63 FDKLSFLYLVTGDV--NKLSKM-QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHHTCH--HHHHHH-HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCH--HHHHHH-HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 45566666677775 433333 22222212 34555556667889999999888874
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.84 E-value=0.67 Score=34.60 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=30.8
Q ss_pred cCChHHHHHHHHHHHHhcCCCCce-eHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 108 LKDHRVGKDVYDYMISIKFEGNAC-VKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 108 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.|+++.|.+.++..++.. +.+.. .+..+-..|.+.|++++|...|++
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444332 33456 777888888889999999999888
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.42 E-value=11 Score=32.04 Aligned_cols=132 Identities=10% Similarity=0.077 Sum_probs=92.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 035847 191 MDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA 270 (523)
Q Consensus 191 i~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 270 (523)
.+....+|+++.|.++.+.+ .+...|..|-. ...+.|+++-|.+.|..... |..+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~------------~AL~~gn~~lAe~cy~~~~D---------~~~L~~ 68 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQ------------EALAQGNASLAEMIYQTQHS---------FDKLSF 68 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHH------------HHHHTTCHHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHH------------HHHHcCChHHHHHHHHHhCC---------HHHHHH
Confidence 34556799999999998876 46778999999 88899999999999988753 233333
Q ss_pred HhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 271 ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 271 a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
-|.-.|+.+.-.++-+.....| -+|.....+...|++ +++.++|.+. |--|-
T Consensus 69 Ly~~tg~~e~L~kla~iA~~~g----------------------~~n~af~~~l~lGdv--~~~i~lL~~~----~r~~e 120 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQTRE----------------------DFGSMLLNTFYNNST--KERSSIFAEG----GSLPL 120 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHTCH--HHHHHHHHHT----TCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHCc----------------------cHHHHHHHHHHcCCH--HHHHHHHHHC----CChHH
Confidence 4455677766666555444433 467777788889999 9999988654 33343
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 351 MEQYCCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 351 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
...+ ....|.-+.|.++.++++.
T Consensus 121 A~~~------A~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 121 AYAV------AKANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHH------HHHTTCHHHHHHHHHHTTC
T ss_pred HHHH------HHHcCcHHHHHHHHHHhCC
Confidence 2222 1236778888888888763
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=87.16 E-value=22 Score=34.16 Aligned_cols=66 Identities=3% Similarity=-0.096 Sum_probs=54.5
Q ss_pred CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 213 KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 213 ~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.+...|.++-. .+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.++......
T Consensus 275 ~~a~~~~alal------------~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 275 NLSIIYQIKAV------------SALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TCHHHHHHHHH------------HHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHH------------HHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46667777755 5566799999999999999875 888888777777888999999999999988754
No 223
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=86.03 E-value=1.3 Score=37.04 Aligned_cols=102 Identities=10% Similarity=0.040 Sum_probs=71.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCh----------hHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGF----------KLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~----------~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
...+.+.+++|++.|+...+.. +-+...|..+-.++...+++ ++|...++..++..
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld------------- 76 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID------------- 76 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------------
Confidence 3445677899999999988753 22566777666677776654 47777777777632
Q ss_pred hhCCCCCcchHHHHHHHHHhcC-----------CCchHHHHHHHHHhHHhcCCccCHhHHHHHHHH
Q 035847 306 IQGLGTGSFVWNSLIDMYGRCG-----------AIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDL 360 (523)
Q Consensus 306 ~y~~~p~~~~~n~li~~~~~~g-----------~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~ 360 (523)
+.+...|+.+=.+|...| +. ++|...|++..+. .|+...|..-+..
T Consensus 77 ----P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~--~eA~~~~~kAl~l---~P~~~~y~~al~~ 133 (158)
T 1zu2_A 77 ----PKKDEAVWCIGNAYTSFAFLTPDETEAKHNF--DLATQFFQQAVDE---QPDNTHYLKSLEM 133 (158)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHhcccCcchhhhhccH--HHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 124457888888887764 78 9999999988754 7887766544443
No 224
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.42 E-value=6.3 Score=35.66 Aligned_cols=188 Identities=10% Similarity=0.060 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 135 PVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 135 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+.+...++.|+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.-..
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 97 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRH-----------------------GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT-----------------------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred cHHHHHHHcCCHHHHHHHHHc-----------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 456666777888777766665 4433321 122344555677888877777775333
Q ss_pred ---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH-------------HHHHHHHHhhccC
Q 035847 213 ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI-------------SLSGVLAACAQVK 276 (523)
Q Consensus 213 ---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~-------------t~~~ll~a~~~~g 276 (523)
+|...++.+.. .+..|+. ++++.+.+.|..|+.. -.+ .+...+..|
T Consensus 98 ~~~~~~~g~t~L~~-------------A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~~ 159 (285)
T 1wdy_A 98 VNECDFYGFTAFME-------------AAVYGKV----KALKFLYKRGANVNLRRKTKEDQERLRKGGAT-ALMDAAEKG 159 (285)
T ss_dssp TTCBCTTCCBHHHH-------------HHHTTCH----HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC-HHHHHHHHT
T ss_pred CCccCcccCCHHHH-------------HHHhCCH----HHHHHHHHhCCCcccccccHHHHHhhccCCCc-HHHHHHHcC
Confidence 23333444433 2345543 3444555556555432 112 223333445
Q ss_pred ChhHHHHHHHHHHHh-cCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhH--
Q 035847 277 GFKLGKEIHGYVLRH-HIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQ-- 353 (523)
Q Consensus 277 ~~~~a~~i~~~~~~~-g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~t-- 353 (523)
..+. .+.+.+. |..++ .+|..-++.+..+. ..|.. ....++++.+.+. |..|+...
T Consensus 160 ~~~~----v~~Ll~~~~~~~~-------------~~~~~g~t~l~~a~-~~~~~--~~~~~i~~~Ll~~-g~~~~~~~~~ 218 (285)
T 1wdy_A 160 HVEV----LKILLDEMGADVN-------------ACDNMGRNALIHAL-LSSDD--SDVEAITHLLLDH-GADVNVRGER 218 (285)
T ss_dssp CHHH----HHHHHHTSCCCTT-------------CCCTTSCCHHHHHH-HCSCT--TTHHHHHHHHHHT-TCCSSCCCTT
T ss_pred CHHH----HHHHHHhcCCCCC-------------ccCCCCCCHHHHHH-Hcccc--chHHHHHHHHHHc-CCCCCCcCCC
Confidence 5543 3334443 44332 23333444444443 44554 4445666666665 77666421
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHhCCCCCCCC
Q 035847 354 YCCMVDLLARAGQFDDTLNFMKKMPFEPSSA 384 (523)
Q Consensus 354 y~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 384 (523)
-.+.+...++.|+.+-+..+++..+..++..
T Consensus 219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDT 249 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhccCCCcccc
Confidence 2234445567888888888888666555544
No 225
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.71 E-value=7.3 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
+=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 45 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--------------~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 45 IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--------------YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--------------HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--------------HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33466788999999999999999999999999855 68898888888887887776 34444443
No 226
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.27 E-value=9.2 Score=34.52 Aligned_cols=235 Identities=8% Similarity=-0.035 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhc
Q 035847 75 SMMGMYNVLGYYEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKC 143 (523)
Q Consensus 75 ~li~~~~~~g~~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~ 143 (523)
+.+...++.|+.+....+++.-. ..| .|...+..|+.+ +.+.+++.|..++.. ...+.+...++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 34445556676665555544211 011 566666666654 444555567665432 122445566677
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCCChh-----
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQKHLV----- 216 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~----- 216 (523)
|+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.-..++..
T Consensus 83 ~~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 139 (285)
T 1wdy_A 83 GSVKLLKLFLSK-----------------------GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139 (285)
T ss_dssp TCHHHHHHHHHT-----------------------TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred CCHHHHHHHHHc-----------------------CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHH
Confidence 888777777665 4433321 1123445566788888888888765443321
Q ss_pred --------hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc-CCCCCH---HHHHHHHHHhhccCChhHHHHH
Q 035847 217 --------SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT-DMQPNT---ISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 217 --------t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~-g~~p~~---~t~~~ll~a~~~~g~~~~a~~i 284 (523)
.++.|. ..+..|+.+-+ +.+.+. |..++. .-.+.+..++ ..+......++
T Consensus 140 ~~~~~~~~g~t~L~-------------~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~a~-~~~~~~~~~~i 201 (285)
T 1wdy_A 140 DQERLRKGGATALM-------------DAAEKGHVEVL----KILLDEMGADVNACDNMGRNALIHAL-LSSDDSDVEAI 201 (285)
T ss_dssp HHHHTTCCCCCHHH-------------HHHHHTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHHHH-HCSCTTTHHHH
T ss_pred HHHhhccCCCcHHH-------------HHHHcCCHHHH----HHHHHhcCCCCCccCCCCCCHHHHHH-HccccchHHHH
Confidence 122332 33455655433 333433 544432 2233343333 34555555677
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHh---HHHHHHHHH
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAME---QYCCMVDLL 361 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~---ty~~li~~~ 361 (523)
.+.+.+.|..++. +|..-++ .+...++.|.. +-+. .+.+.+|..++.. -.+ .+...
T Consensus 202 ~~~Ll~~g~~~~~-------------~~~~g~t-~L~~A~~~~~~--~~v~----~Ll~~~g~~~~~~~~~g~t-~l~~A 260 (285)
T 1wdy_A 202 THLLLDHGADVNV-------------RGERGKT-PLILAVEKKHL--GLVQ----RLLEQEHIEINDTDSDGKT-ALLLA 260 (285)
T ss_dssp HHHHHHTTCCSSC-------------CCTTSCC-HHHHHHHTTCH--HHHH----HHHHSSSCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHcCCCCCC-------------cCCCCCc-HHHHHHHcCCH--HHHH----HHHhccCCCccccCCCCCc-HHHHH
Confidence 7888888776542 2222223 34445566765 4333 3333235555532 122 23334
Q ss_pred HhhCCHHHHHHHHH
Q 035847 362 ARAGQFDDTLNFMK 375 (523)
Q Consensus 362 ~~~g~~~~A~~~~~ 375 (523)
.+.|+.+-+.-+++
T Consensus 261 ~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 261 VELKLKKIAELLCK 274 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 45666655444443
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=83.22 E-value=0.089 Score=52.25 Aligned_cols=177 Identities=9% Similarity=0.067 Sum_probs=115.2
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHhhHcc----HHHHhhccCChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcC
Q 035847 69 NVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG----VYKACSELKDHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCG 144 (523)
Q Consensus 69 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 144 (523)
....|.-|-.+..+.+++.+|++.|-+-..-. ++.++.+.|.++.-...+....+. ..+..+=+.|+-+|+|.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC
Confidence 34678889999999999999988874332222 888888888888877777666554 456677788999999998
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------------
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIK------------- 211 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~------------- 211 (523)
++.+-.+++.. ||+.-...+-+-|...|..+.|.-+|..+.
T Consensus 131 rL~elEefl~~--------------------------~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~ 184 (624)
T 3lvg_A 131 RLAELEEFING--------------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG 184 (624)
T ss_dssp SSSTTTSTTSC--------------------------CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCS
T ss_pred cHHHHHHHHcC--------------------------CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 87765554433 333333344455555555555555555443
Q ss_pred -----------CCChhhHHHHHHhhhhcCCccc------------------cchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 212 -----------QKHLVSWNAMLAGYALGGFREE------------------ITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 212 -----------~~~~~t~~~li~~~~~~g~~~~------------------i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
..++.||--+-.++...+.+.- |.-|-+.|.+++-+.+++.-... -+...
T Consensus 185 ~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHm 263 (624)
T 3lvg_A 185 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHM 263 (624)
T ss_dssp GGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCH
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhH
Confidence 1355677777777766665433 77788888888888887765421 23344
Q ss_pred HHHHHHHHHhhc
Q 035847 263 ISLSGVLAACAQ 274 (523)
Q Consensus 263 ~t~~~ll~a~~~ 274 (523)
-+|+-|--.|++
T Consensus 264 GmFTELaILYsK 275 (624)
T 3lvg_A 264 GMFTELAILYSK 275 (624)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.04 E-value=5.1 Score=39.03 Aligned_cols=86 Identities=9% Similarity=0.022 Sum_probs=63.5
Q ss_pred CcchHHHHHHHHH---hcCCchHHHHHHHHhhHc--c-----------------------------HHHHhhccCChHHH
Q 035847 69 NVFSWTSMMGMYN---VLGYYEEIVNLFYLLIDE--G-----------------------------VYKACSELKDHRVG 114 (523)
Q Consensus 69 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~--g-----------------------------ll~~~~~~~~~~~a 114 (523)
|+..|..++..-. ..|+.+.|.+.+.+.... | ++.++...|+..++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4445555554332 346777777777665432 2 55666778999999
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
......+.... +-+...|..+|.+|.+.|+..+|++.|+.
T Consensus 191 ~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 191 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98888887653 45777999999999999999999999998
No 229
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=82.57 E-value=6.7 Score=34.57 Aligned_cols=88 Identities=5% Similarity=-0.087 Sum_probs=49.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.|...+..|+.+..+.+++.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----------------------- 68 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA----------------------- 68 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc-----------------------
Confidence 44455556666666666666666665554332 23445556667777766666655
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~ 211 (523)
|..++.. ...+.+...++.|+.+-+..+++...
T Consensus 69 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4333221 11233445556777777777776543
No 230
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.12 E-value=6.9 Score=29.51 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=50.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLS 266 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 266 (523)
+=+..+...|++++|..+.+.+.-||+.+|-+|-. .+.|..+++..-+.+|..+| .|....|.
T Consensus 44 IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--------------~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 44 IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--------------WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--------------HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--------------HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 33466788999999999999999999999999855 68898888888888888776 34444443
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=80.70 E-value=8.1 Score=31.91 Aligned_cols=83 Identities=14% Similarity=-0.006 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCC---ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHH
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLN---NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMY 80 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~ 80 (523)
..+.+-|.+....|. ++..+--.+--++++++ ++++|..+++.+.+... | ..+...+=.|--+|
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-p-----------~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-K-----------EEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-H-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-c-----------cchHHHHHHHHHHH
Confidence 455566666655554 55555555555666777 66788888888887641 1 01223333344567
Q ss_pred HhcCCchHHHHHHHHhhHc
Q 035847 81 NVLGYYEEIVNLFYLLIDE 99 (523)
Q Consensus 81 ~~~g~~~~A~~l~~~m~~~ 99 (523)
.+.|++++|.+.++...+.
T Consensus 82 ~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhc
Confidence 8899999999999887764
No 232
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.50 E-value=3 Score=31.64 Aligned_cols=62 Identities=6% Similarity=0.014 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHH
Q 035847 111 HRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSL 190 (523)
Q Consensus 111 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~l 190 (523)
.=+.++-++.+....+.|++.+..+.+++|-+.+++.-|.++|+. +|. .+.+...+|..+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~-------------------iK~-K~~~~~~iY~~~ 85 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEV-------------------VKD-KAGPHKEIYPYV 85 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HTTTCTTHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-HhcCchhhHHHH
Confidence 334555555666666899999999999999999999999999998 766 455555567777
Q ss_pred HH
Q 035847 191 MD 192 (523)
Q Consensus 191 i~ 192 (523)
++
T Consensus 86 lq 87 (109)
T 1v54_E 86 IQ 87 (109)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=79.83 E-value=23 Score=28.69 Aligned_cols=133 Identities=6% Similarity=-0.063 Sum_probs=80.6
Q ss_pred CCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHH
Q 035847 35 LNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVG 114 (523)
Q Consensus 35 ~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a 114 (523)
.|..+++.++.....++. +..-||-+|--....-+-+-.+++++..-..= -....|++...
T Consensus 20 dG~v~qGveii~k~~~ss----------------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF---Dis~C~NlKrV 80 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS----------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---DLDKCQNLKSV 80 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS----------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---CGGGCSCTHHH
T ss_pred hhhHHHHHHHHHHHcCCC----------------CccccceeeeecchhhchhHHHHHHHHHhhhc---CcHhhhcHHHH
Confidence 577888888888777653 45556666655555555555555555443210 00112222222
Q ss_pred HHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHH
Q 035847 115 KDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFY 194 (523)
Q Consensus 115 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~ 194 (523)
..-+-. ...+....+..++.....|+-|.-.++..+ +-. ..+|+....-.+-.+|
T Consensus 81 i~C~~~-----~n~~se~vd~ALd~lv~~~KkDqLdki~~~-------------------~l~-n~~~~~~~l~kia~Ay 135 (172)
T 1wy6_A 81 VECGVI-----NNTLNEHVNKALDILVIQGKRDKLEEIGRE-------------------ILK-NNEVSASILVAIANAL 135 (172)
T ss_dssp HHHHHH-----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HC---CCSCHHHHHHHHHHH
T ss_pred HHHHHH-----hcchHHHHHHHHHHHHHhccHhHHHHHHHH-------------------Hhc-cCCCChHHHHHHHHHH
Confidence 222221 123445556667777777877777777766 433 5677778888889999
Q ss_pred HhcCChHHHHHHHhcCC
Q 035847 195 AKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 195 ~k~g~~~~A~~vf~~m~ 211 (523)
.|.|+..+|.+++.+..
T Consensus 136 ~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 136 RRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHHH
Confidence 99999999988887543
No 234
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.49 E-value=14 Score=32.31 Aligned_cols=144 Identities=13% Similarity=0.007 Sum_probs=77.2
Q ss_pred HHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhHcc--------
Q 035847 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLIDEG-------- 100 (523)
Q Consensus 29 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------- 100 (523)
|...+..|+.+..+.+++.+.+.|..++ .+|..-++.| ...+..|+.+-+..++ +.|
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~~~~~g~t~L-~~A~~~~~~~~v~~Ll----~~g~~~~~~~~ 77 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD----------IYNNLRQTPL-HLAVITTLPSVVRLLV----TAGASPMALDR 77 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC----------CCCTTSCCHH-HHHHHTTCHHHHHHHH----HTTCCTTCCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC----------cccccCCCHH-HHHHHcCCHHHHHHHH----HcCCCccccCC
Confidence 3344567899988888888777776332 2333333443 3444566665433333 333
Q ss_pred ----HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 ----VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 ----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
.+...+..|+.+..+.+++.....++.++.. ...+.+...++.|+.+-...+++.
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~------------------- 138 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER------------------- 138 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc-------------------
Confidence 5555666676665555544432111122211 122344445566777666666655
Q ss_pred hhcCCCCCch---hHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 175 LKKDDLESDL---LVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 175 ~~~~g~~~d~---~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
|..++. ....+.+...++.|+.+-+..+++.-
T Consensus 139 ----g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 139 ----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173 (241)
T ss_dssp ----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ----CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 443332 12334455666778888777777653
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.92 E-value=6.3 Score=29.33 Aligned_cols=65 Identities=11% Similarity=0.006 Sum_probs=42.5
Q ss_pred CcchHHHHHHhccCCC---ChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh
Q 035847 21 CTVTYALIFQRCPKLN---NLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI 97 (523)
Q Consensus 21 ~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 97 (523)
|...+..+-.++...+ ..++|..++++..+.. ..++.++..+-..+.+.|++++|+..|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------------PYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444443222 3678888888877764 2356677777777888888888888888877
Q ss_pred Hc
Q 035847 98 DE 99 (523)
Q Consensus 98 ~~ 99 (523)
+.
T Consensus 71 ~~ 72 (93)
T 3bee_A 71 DS 72 (93)
T ss_dssp TC
T ss_pred hh
Confidence 64
No 236
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.18 E-value=5.5 Score=29.67 Aligned_cols=64 Identities=3% Similarity=-0.113 Sum_probs=47.5
Q ss_pred CchhHHHHHHHHHHhcCC---hHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh
Q 035847 182 SDLLVNNSLMDFYAKCRY---LKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ 255 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~---~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~ 255 (523)
.|...+..+-.++...++ .++|..+|++..+ | ++.++..+-. .+.+.|++++|+..|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~------------~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIAN------------DHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH------------HHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHh
Confidence 455666677777655544 6899999988753 4 4445665656 78899999999999999988
Q ss_pred cC
Q 035847 256 TD 257 (523)
Q Consensus 256 ~g 257 (523)
..
T Consensus 72 ~~ 73 (93)
T 3bee_A 72 SN 73 (93)
T ss_dssp CC
T ss_pred hC
Confidence 53
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=78.17 E-value=19 Score=28.50 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHH---HHHHHHhCCCC--CCCC------------CCCCHHHHHHH
Q 035847 333 EGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDD---TLNFMKKMPFE--PSSA------------EPCNPDIAEHA 395 (523)
Q Consensus 333 ~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~~~~~m~~~--p~~~------------~~~~~~~~~~~ 395 (523)
.+.+-|...... |. |+..+--.+.-++.+.....+ +..++++.--. |... +-|+.+.|.+.
T Consensus 19 ~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444443333 32 555555555556666555444 66666664222 1111 66777777777
Q ss_pred HHHHHhhCCCCC
Q 035847 396 ARHLFELEPLSS 407 (523)
Q Consensus 396 ~~~l~~~~~~~~ 407 (523)
++.+++.+|.|.
T Consensus 97 ~~~lL~~eP~n~ 108 (126)
T 1nzn_A 97 VRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHHhCCCCH
Confidence 778888888765
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.92 E-value=25 Score=28.89 Aligned_cols=111 Identities=12% Similarity=0.004 Sum_probs=71.9
Q ss_pred chhHHHHHHHHHHhcCCh------HHHHHHHhcCCC---C----ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHH
Q 035847 183 DLLVNNSLMDFYAKCRYL------KVAHCKFSKIKQ---K----HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEF 249 (523)
Q Consensus 183 d~~~~~~li~~~~k~g~~------~~A~~vf~~m~~---~----~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~l 249 (523)
|..+|-..+...-+.|+. +..+++|++... | .-..|--|---|+ .+...+++++|-++
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA---------~~~ei~D~d~aR~v 82 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA---------ELKAIQEPDDARDY 82 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH---------HHHHHHCGGGCHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH---------HHHHhcCHHHHHHH
Confidence 455666667777777877 666666664321 1 1223333333233 33345899999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHH
Q 035847 250 FSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIAL 303 (523)
Q Consensus 250 f~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~l 303 (523)
|+.+...+-+. ...|...-.-=.+.|++..|+++++..+..+-.|....-+++
T Consensus 83 y~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 83 FQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 99997753333 555555555556789999999999999998877765444443
No 239
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=77.11 E-value=8.7 Score=31.70 Aligned_cols=48 Identities=10% Similarity=-0.069 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC---ChhHHHHHHHHHHH
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK---GFKLGKEIHGYVLR 290 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~i~~~~~~ 290 (523)
....+.+-|.+..+.|. ++..+--.+--+++++. ++++|..+++.+.+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~ 63 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP 63 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34455556665555444 34444333334555554 34455555544444
No 240
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=76.86 E-value=8.2 Score=35.74 Aligned_cols=76 Identities=18% Similarity=0.117 Sum_probs=61.4
Q ss_pred CCc---hhHHHHHHHHHHh-----cCChHHHHHHHhcCC--CC--ChhhHHHHHHhhhhcCCccccchhhcc-CCchHHH
Q 035847 181 ESD---LLVNNSLMDFYAK-----CRYLKVAHCKFSKIK--QK--HLVSWNAMLAGYALGGFREEITGFTQY-GDGETAL 247 (523)
Q Consensus 181 ~~d---~~~~~~li~~~~k-----~g~~~~A~~vf~~m~--~~--~~~t~~~li~~~~~~g~~~~i~~~~~~-g~~~~A~ 247 (523)
.|+ -..|..|...|.+ -|+.++|++.|++-. .| +..++...-. .++.. |+.++|.
T Consensus 193 DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~------------~l~~~~gd~~~a~ 260 (301)
T 3u64_A 193 WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD------------ALCIPLNNRAGFD 260 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH------------HTTTTTTCHHHHH
T ss_pred CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH------------HHHHhcCCHHHHH
Confidence 554 6689999999999 499999999999875 35 4778888888 78784 9999999
Q ss_pred HHHHHHHhcCCC--CCHHHHHHH
Q 035847 248 EFFSRMIQTDMQ--PNTISLSGV 268 (523)
Q Consensus 248 ~lf~~M~~~g~~--p~~~t~~~l 268 (523)
+.+++-.+.... |+....+.+
T Consensus 261 ~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 261 EALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHcCCCCCCCChhHHHHH
Confidence 999999998777 776555543
No 241
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=76.72 E-value=20 Score=31.37 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=62.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+...+..++.+ +.+.+++.|..++.. ...+.+...++.|+.+-+..+++.
T Consensus 114 ~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----------------------- 166 (237)
T 3b7b_A 114 PMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA----------------------- 166 (237)
T ss_dssp HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT-----------------------
T ss_pred HHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc-----------------------
Confidence 444455555544 444455556555432 122344555566777666665554
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHH
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQK---HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRM 253 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~---~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M 253 (523)
|..++.. ...+.+...++.|+.+-+.-+++.-..+ |..-.+.+ . ..+..|+...++++.+.+
T Consensus 167 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l-~------------~A~~~~~~~~~~~l~~~l 233 (237)
T 3b7b_A 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL-Q------------CASLNSQVWSALQMSKAL 233 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHH-H------------HSCTTCHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHH-H------------HHHHHHHHHHHHHHHHHh
Confidence 4443321 1223455666778887777777653332 22223333 2 345677788888888877
Q ss_pred Hh
Q 035847 254 IQ 255 (523)
Q Consensus 254 ~~ 255 (523)
++
T Consensus 234 ~d 235 (237)
T 3b7b_A 234 QD 235 (237)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.18 E-value=15 Score=27.91 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=44.2
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+.-+..+-++.+....+.|++....+.|.||-+.+++-.|..+++-++..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 55677777888888899999999999999999999999999999888663
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.45 E-value=49 Score=32.66 Aligned_cols=190 Identities=10% Similarity=-0.041 Sum_probs=102.7
Q ss_pred hhHHHHHHHHhhhC-----CCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHh-CCCcchHHH-------HhcCCCCCC
Q 035847 3 IKNVTLLLQSMDLT-----NPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVC-GVELCAFLG-------MFEKMPERN 69 (523)
Q Consensus 3 ~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~-------~f~~~~~~~ 69 (523)
+++|++-+..+.+. ...........++..|...++++.....+..+.+. |........ .++..|.++
T Consensus 32 ~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d 111 (445)
T 4b4t_P 32 CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD 111 (445)
T ss_dssp HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh
Confidence 45666666555432 23334556778889999999998877666555432 321111111 222222222
Q ss_pred cchHHHHHHHHH--hcCCc-hHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCC-----ceeHhHHHHHHH
Q 035847 70 VFSWTSMMGMYN--VLGYY-EEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGN-----ACVKRPVLDMFI 141 (523)
Q Consensus 70 ~~~~~~li~~~~--~~g~~-~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~ 141 (523)
..+.-.+|.... ..|+. -+..+. ++. .-+...+-..|++.+|..++..+...-...+ +..+..-++.|.
T Consensus 112 ~~~~~~~i~~l~~vte~kiflE~era--rl~-~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 112 LNTRISVIETIRVVTENKIFVEVERA--RVT-KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp HHHHHHHHHCCSSSSSCCCCCCHHHH--HHH-HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHH--HHH-HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222222222111 01111 000000 000 0055566667888888877777653322222 346777889999
Q ss_pred hcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 142 KCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD--LLVNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 142 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d--~~~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
..+++..|..++.++ -...... ...|+ ...|..++..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki--------------~~~~~~~-~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKI--------------LKKTFKN-PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHH--------------HHHHHHS-SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH--------------HHhhccc-CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999988871 0001111 23333 346677888888899999888777665
No 244
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=73.64 E-value=58 Score=31.55 Aligned_cols=43 Identities=2% Similarity=0.005 Sum_probs=25.0
Q ss_pred HHHHHHhhhCCCCCCcch--HHHHHHhccCCCChHHHHHHHHHHHHhCC
Q 035847 7 TLLLQSMDLTNPDECTVT--YALIFQRCPKLNNLELGIQVHAHLIVCGV 53 (523)
Q Consensus 7 ~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 53 (523)
+++++.+.+.|..|+... ..+.|...+..|+.+.++.+ .+.|.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~ 71 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKA 71 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTC
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCC
Confidence 456777777787766432 23345555567777655444 44565
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=72.73 E-value=36 Score=28.01 Aligned_cols=84 Identities=11% Similarity=0.117 Sum_probs=55.8
Q ss_pred CCcchHHHHHHHHHhcCCc------hHHHHHHHHhhHcc-------------------HHHHhhccCChHHHHHHHHHHH
Q 035847 68 RNVFSWTSMMGMYNVLGYY------EEIVNLFYLLIDEG-------------------VYKACSELKDHRVGKDVYDYMI 122 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g-------------------ll~~~~~~~~~~~a~~~~~~m~ 122 (523)
.|..+|=..+.-.-+.|++ ++.+++|++-...- ++. ..+|+++|+++|..++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~---ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK---AIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH---HHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHH
Confidence 3556666666666666777 66666665543221 222 2378999999999998
Q ss_pred HhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhh
Q 035847 123 SIKFEGNACVKRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 123 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+-.- ..+|-..-..-.+.|+++.|.+++..
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 763222 55666666666778889999888887
No 246
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.47 E-value=13 Score=34.02 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=22.2
Q ss_pred HhhCCHHHHHHHHHhCCCCCCCC-----CCCCHHHHHHHHHHHHhhCCC
Q 035847 362 ARAGQFDDTLNFMKKMPFEPSSA-----EPCNPDIAEHAARHLFELEPL 405 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m~~~p~~~-----~~~~~~~~~~~~~~l~~~~~~ 405 (523)
++.|+.+-+.-++ +-+..|+.. ..++.+..+...+...+..+.
T Consensus 203 ~~~~~~~~v~~Ll-~~gad~~~~~~~a~~~~~~~iv~~Ll~~g~~~~~~ 250 (285)
T 3kea_A 203 IDNKDIEMLQALF-KYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSD 250 (285)
T ss_dssp HHHTCHHHHHHHT-TSCBCSTTTTGGGGTTTCHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHH-HcCCCCCCCChhhhhcCCHHHHHHHHHcCCCCCCc
Confidence 3455554443333 334444443 556667666666665555443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.45 E-value=1.3e+02 Score=33.68 Aligned_cols=91 Identities=8% Similarity=0.018 Sum_probs=63.1
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHh
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKE 344 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~ 344 (523)
|.-++..+.+.+..+.+.++-...++..-..+... ....|..+.+++...|++ ++|...+-.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~------------~~~l~~~iFk~~L~l~~y--e~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDL------------SIAITHETLKTACAAGKF--DAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH------------HHHHHHHHHHHHHHHCCS--GGGGHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh------------HHHHHHHHHHHHHhhCCH--HHHHHHHHhCCCH
Confidence 55666677777777777777666655322111100 112589999999999999 9999999888754
Q ss_pred cCCccCHhHHHHHHHHHHhhCCHHHHHH
Q 035847 345 YNMEPAMEQYCCMVDLLARAGQFDDTLN 372 (523)
Q Consensus 345 ~g~~p~~~ty~~li~~~~~~g~~~~A~~ 372 (523)
. --......||..+|..|.+++-..
T Consensus 968 -~--~r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 968 -P--LKKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp -S--SCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred -H--HHHHHHHHHHHHHHhCCChhhhhC
Confidence 3 335678889999998888776543
No 248
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=71.23 E-value=25 Score=32.54 Aligned_cols=98 Identities=11% Similarity=-0.092 Sum_probs=69.0
Q ss_pred chhHHHHHHH-HHHhc--CC------hHHHHHHHhcCC--CCC---hhhHHHHHHhhhhcCCccccchhhc-----cCCc
Q 035847 183 DLLVNNSLMD-FYAKC--RY------LKVAHCKFSKIK--QKH---LVSWNAMLAGYALGGFREEITGFTQ-----YGDG 243 (523)
Q Consensus 183 d~~~~~~li~-~~~k~--g~------~~~A~~vf~~m~--~~~---~~t~~~li~~~~~~g~~~~i~~~~~-----~g~~ 243 (523)
....|..++. .+... |+ +..|...+++.. .|+ -..|++|.. .|.+ -|+.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~------------lY~~vPp~~gGd~ 220 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTK------------FYAAAPESFGGGM 220 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH------------HHHHSCTTTTCCH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHH------------HHHhCCCccCCCH
Confidence 3445665554 33332 32 344555555443 355 468999999 7777 4999
Q ss_pred hHHHHHHHHHHhcCCCC--CHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhcCC
Q 035847 244 ETALEFFSRMIQTDMQP--NTISLSGVLAACAQV-KGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~~~-g~~~~a~~i~~~~~~~g~~ 294 (523)
++|.+.|++-.+- .| +..++...-..++.. |+.+.+.+.++..+.....
T Consensus 221 ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 221 EKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999884 45 366777777888885 9999999999999885443
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.10 E-value=64 Score=34.24 Aligned_cols=55 Identities=9% Similarity=0.149 Sum_probs=46.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHhHHhcCCccC-HhHHHHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 320 IDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-MEQYCCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 320 i~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
.+-+...|+. +-|+++-++... +.|+ -.||..|...|...|+++.|+-.++.+|+
T Consensus 344 a~FLl~K~~~--elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 344 TNFLLNRGDY--ELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHTTCH--HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHhccCcH--HHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 3445667899 999999887764 4787 58999999999999999999999999984
No 250
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=69.59 E-value=83 Score=30.39 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=76.5
Q ss_pred HHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH------cc-
Q 035847 28 IFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID------EG- 100 (523)
Q Consensus 28 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~------~g- 100 (523)
.|...+..|+++.++.+ .+.|..++ .+|...++ .+...++.|+.+-+.-+++.=.. .|
T Consensus 17 ~L~~Aa~~g~~~~v~~L----l~~g~~~~----------~~~~~~~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~ 81 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNL----LQRGASPN----------VSNVKVET-PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ 81 (437)
T ss_dssp HHHHHHHHTCHHHHHHH----HHTTCCSC----------CSSSCCCC-HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC
T ss_pred HHHHHHHCCCHHHHHHH----HHcCCCCC----------CCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence 34444566777655544 45566332 22333333 34455567777665555543111 11
Q ss_pred -HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc
Q 035847 101 -VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177 (523)
Q Consensus 101 -ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 177 (523)
.|...+..|+.+. .+.+++.|..|+... ..+.+...++.|+.+-+..+++.
T Consensus 82 t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---------------------- 135 (437)
T 1n11_A 82 TPLHCAARIGHTNM----VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK---------------------- 135 (437)
T ss_dssp CHHHHHHHHTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----------------------
T ss_pred CHHHHHHHCCCHHH----HHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----------------------
Confidence 5666667777654 444555566554332 22345566777888888777766
Q ss_pred CCCCCch--hHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 178 DDLESDL--LVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 178 ~g~~~d~--~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
+..++. ....+.+...++.|+++-+..+++.-..
T Consensus 136 -~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 171 (437)
T 1n11_A 136 -EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH 171 (437)
T ss_dssp -TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 221110 0112334556677888888777775443
No 251
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=69.19 E-value=30 Score=25.83 Aligned_cols=56 Identities=9% Similarity=-0.102 Sum_probs=46.0
Q ss_pred hhhccCCchHHHHHHHHHHhcC------CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 236 GFTQYGDGETALEFFSRMIQTD------MQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
.+.+.|++..|...|+...+.- -.+....+..+-.++.+.|+++.|...++.+.+.
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 6778999999999999876531 1245677888889999999999999999999874
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.11 E-value=14 Score=29.67 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHH
Q 035847 110 DHRVGKDVYDYMISIKFEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNS 189 (523)
Q Consensus 110 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~ 189 (523)
|.=+.++-++.+....+.|++.+..+.++++-+-+++.-|.++|+. +|. .+.+...+|..
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~-------------------vK~-K~~~~~~iY~y 127 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEV-------------------VKD-KAGPHKEIYPY 127 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHH-HTTTCTTHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH-------------------HHH-hcCCchhhHHH
Confidence 4445666677777777999999999999999999999999999999 776 55566667877
Q ss_pred HHH
Q 035847 190 LMD 192 (523)
Q Consensus 190 li~ 192 (523)
+++
T Consensus 128 ~lq 130 (152)
T 2y69_E 128 VIQ 130 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.61 E-value=17 Score=40.93 Aligned_cols=67 Identities=6% Similarity=0.078 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC--ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHH
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQK--HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSR 252 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~~--~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~ 252 (523)
.|..+.+.+...|++++|...+-.++.+ -......||..+|+.|..+.+-.+--.|..++..+++..
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~ 1008 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLER 1008 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHH
Confidence 4566666666667777666666555422 123455566655555555544344445555555555544
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=68.44 E-value=44 Score=35.51 Aligned_cols=117 Identities=9% Similarity=-0.000 Sum_probs=74.5
Q ss_pred HHHHHHhccCCCC-hHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCC-chHHHHHHHHhhHc---
Q 035847 25 YALIFQRCPKLNN-LELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGY-YEEIVNLFYLLIDE--- 99 (523)
Q Consensus 25 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~--- 99 (523)
...+++.+...++ .+.|..+++.+.+.... -++.....+|..+.+.+. --+|+++..+..+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~-------------~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~ 317 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPI-------------HDIYYKTAMITILDHIETKELDMITILNETLDPLLS 317 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGG-------------GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCc-------------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Confidence 3556666666666 57788888888776421 111112233333333222 12344444433211
Q ss_pred -------------------c-H----HHHhhccCChHHHHHHHHHHHHhcCCC-CceeHhHHHHHHHhcCCHHHHHHHhh
Q 035847 100 -------------------G-V----YKACSELKDHRVGKDVYDYMISIKFEG-NACVKRPVLDMFIKCGRMEMASGEFE 154 (523)
Q Consensus 100 -------------------g-l----l~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~f~ 154 (523)
. + .+-|.+.|+++.|..+-.+.+.. .| +-.+|-.|...|.+.|+++.|+-.+.
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 318 LLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 0 2 23355689999999999998876 45 46699999999999999999999998
Q ss_pred hc
Q 035847 155 EK 156 (523)
Q Consensus 155 ~~ 156 (523)
.+
T Consensus 396 Sc 397 (754)
T 4gns_B 396 SM 397 (754)
T ss_dssp HS
T ss_pred cC
Confidence 83
No 255
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=67.24 E-value=19 Score=26.95 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhHHhcC-----CccCHhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 316 WNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN-----MEPAMEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 316 ~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
+-.|-..+.+.|+. +.|...|+...+... -.+....|..|..++.+.|++++|..++++. .+.|+.
T Consensus 8 c~~lG~~~~~~~~y--~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 8 CFELGKVAYTEADY--YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHccch--HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 44566777888999 999999988776421 1234678888999999999999999998875 244543
No 256
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=66.79 E-value=46 Score=30.24 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=75.2
Q ss_pred HHHHHHhcCCchHHHHHHHHhh------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCce---eHhHHHHHHHhcC
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLI------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNAC---VKRPVLDMFIKCG 144 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g 144 (523)
.+...+..|+.+-+.-+++.=. ..| .+...+..|+.+.++- +++.|..++.. -+.+.+...+..|
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~ 140 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLN 140 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcC
Confidence 3444556676654444443210 001 4555556666554443 34445544433 2245566666777
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhhHHH
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLES-DLLVNNSLMDFYAKCRYLKVAHCKFSKIK---QKHLVSWNA 220 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-d~~~~~~li~~~~k~g~~~~A~~vf~~m~---~~~~~t~~~ 220 (523)
+.+-+..+++. |..+ +.....+.+...++.|+.+-+..+++.-. .+|..-++.
T Consensus 141 ~~~~v~~Ll~~-----------------------g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~ 197 (285)
T 3kea_A 141 DVSIVSYFLSE-----------------------IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP 197 (285)
T ss_dssp CHHHHHHHHTT-----------------------SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT
T ss_pred CHHHHHHHHhC-----------------------CCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh
Confidence 77766666655 3322 22134455566677888887777775422 223223333
Q ss_pred HHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 221 li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
.+. ..++.|+ .++.+-+.+.|..|+...
T Consensus 198 ~L~------------~A~~~~~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 198 DIK------------LAIDNKD----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp THH------------HHHHHTC----HHHHHHHTTSCBCSTTTT
T ss_pred HHH------------HHHHcCC----HHHHHHHHHcCCCCCCCC
Confidence 222 2334454 345555667787777655
No 257
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=65.80 E-value=60 Score=27.35 Aligned_cols=42 Identities=7% Similarity=-0.070 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+|..+-...+.++++.|+.+....+...+..++...-...+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444455555555555555444444444444454444344444
No 258
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=64.92 E-value=8.5 Score=38.48 Aligned_cols=243 Identities=14% Similarity=0.137 Sum_probs=133.3
Q ss_pred CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 129 NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 129 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
.+.+|+-|-.++.+.|++.+|..-|-+| -|...|..+|....+.|..++-.+.+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------------------------~Dps~y~eVi~~A~~~~~~edLv~yL~ 107 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------------------DDPSSYMEVVQAANTSGNWEELVKYLQ 107 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------------------------SCCCSSSHHHHHTTTSSCCTTHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------------------------CChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4567777777777777777776665441 133344455555555555555555554
Q ss_pred cCCC--CChhhHHHHHHhhhhcCCccccc----------------hhhccCCchHHHHHHHHHHhc--------------
Q 035847 209 KIKQ--KHLVSWNAMLAGYALGGFREEIT----------------GFTQYGDGETALEFFSRMIQT-------------- 256 (523)
Q Consensus 209 ~m~~--~~~~t~~~li~~~~~~g~~~~i~----------------~~~~~g~~~~A~~lf~~M~~~-------------- 256 (523)
..++ ++...=+.||-+|++.++..++. -|...|.++.|.-+|..+...
T Consensus 108 MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq 187 (624)
T 3lvg_A 108 MARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQ 187 (624)
T ss_dssp TTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGG
T ss_pred HHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 4332 33334445555555555554422 333344444444444333110
Q ss_pred ------CCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhh-----------------CC-CCC
Q 035847 257 ------DMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ-----------------GL-GTG 312 (523)
Q Consensus 257 ------g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y-----------------~~-~p~ 312 (523)
.---+..||--+-.||...+.+..|...--.++-+.-.. ..||..| |+ ...
T Consensus 188 ~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL-----~elv~~YE~~G~f~ELIsLlEaglglErAH 262 (624)
T 3lvg_A 188 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL-----EELINYYQDRGYFEELITMLEAALGLERAH 262 (624)
T ss_dssp SSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC-----SGGGSSSSTTCCCTTSTTTHHHHTTSTTCC
T ss_pred HHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH-----HHHHHHHHhCCCHHHHHHHHHHHhCCCchh
Confidence 012366889999899999888877765532222221111 1233333 55 678
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC-------HhHHHHHHHHHHhhCCHHHHHHHHHhC--------
Q 035847 313 SFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA-------MEQYCCMVDLLARAGQFDDTLNFMKKM-------- 377 (523)
Q Consensus 313 ~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~~~~~m-------- 377 (523)
...|+-|--.|++-. + ++-++.++..-.+-+ .|. ...|.-++-.|..-..+|.|...+-+-
T Consensus 263 mGmFTELaILYsKY~-P--eKlmEHlklf~sriN-ipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~ 338 (624)
T 3lvg_A 263 MGMFTELAILYSKFK-P--QKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 338 (624)
T ss_dssp HHHHHHHHHHHHSSC-T--THHHHHHTTSSSSSC-CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGG
T ss_pred HHHHHHHHHHHHhcC-H--HHHHHHHHHHHHhcc-HHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHH
Confidence 888999999999874 4 555555554433212 222 346777888888888888776443221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCC
Q 035847 378 PFEPSSAEPCNPDIAEHAARHLFELEPL 405 (523)
Q Consensus 378 ~~~p~~~~~~~~~~~~~~~~~l~~~~~~ 405 (523)
.|+--.++-.|.+.--++..--++..|.
T Consensus 339 ~Fkdii~KVaN~EiyYKAi~FYL~e~P~ 366 (624)
T 3lvg_A 339 QFKDIITKVANVELYYRAIQFYLEFKPL 366 (624)
T ss_dssp GGTTTGGGCSCSHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhChH
Confidence 1221122667777776665554444443
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.64 E-value=12 Score=36.42 Aligned_cols=68 Identities=9% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHh-----cC
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQ--K-HLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQ-----TD 257 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~--~-~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~-----~g 257 (523)
+...++..+...|+.++|...+..+.. | +...|-.+|. ++.+.|+..+|++.|++..+ -|
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~------------al~~~Gr~~~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLIT------------AYYLSDRQSDALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH------------HHHTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------HHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 345677888899999999888776643 4 6678999999 99999999999999998755 48
Q ss_pred CCCCHHHH
Q 035847 258 MQPNTISL 265 (523)
Q Consensus 258 ~~p~~~t~ 265 (523)
+.|...+-
T Consensus 241 ~~P~~~l~ 248 (388)
T 2ff4_A 241 IDPGPTLR 248 (388)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
Confidence 88887664
No 260
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=63.48 E-value=24 Score=31.43 Aligned_cols=94 Identities=9% Similarity=-0.032 Sum_probs=52.4
Q ss_pred ccCChHHHHHHHHHHHHhc---------CCCCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc
Q 035847 107 ELKDHRVGKDVYDYMISIK---------FEGNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK 177 (523)
Q Consensus 107 ~~~~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 177 (523)
+.|+.+.++.+++.-...+ +........+.+...+..|+.+-+..+++.
T Consensus 58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~---------------------- 115 (260)
T 3jxi_A 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK---------------------- 115 (260)
T ss_dssp BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT----------------------
T ss_pred hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhC----------------------
Confidence 4566666666555433211 111111233445555667888877777665
Q ss_pred CCCCCchhH----------------HHHHHHHHHhcCChHHHHHHHhc---CC---CCChhhHHHHHH
Q 035847 178 DDLESDLLV----------------NNSLMDFYAKCRYLKVAHCKFSK---IK---QKHLVSWNAMLA 223 (523)
Q Consensus 178 ~g~~~d~~~----------------~~~li~~~~k~g~~~~A~~vf~~---m~---~~~~~t~~~li~ 223 (523)
|..++... ..+.+...+..|+.+-+..+++. -. .+|..-++.|..
T Consensus 116 -ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~ 182 (260)
T 3jxi_A 116 -GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182 (260)
T ss_dssp -TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred -CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence 44444322 33456666788999999988883 22 244455666655
No 261
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.40 E-value=30 Score=30.00 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcC
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m 210 (523)
+.+...++.|+.+-+..+++.-
T Consensus 179 t~L~~A~~~~~~~~v~~Ll~~g 200 (240)
T 3eu9_A 179 TALHWAVLAGNTTVISLLLEAG 200 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHcC
Confidence 3455566777777777777653
No 262
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.76 E-value=31 Score=29.86 Aligned_cols=16 Identities=6% Similarity=0.011 Sum_probs=7.7
Q ss_pred HHHhcCChHHHHHHHh
Q 035847 193 FYAKCRYLKVAHCKFS 208 (523)
Q Consensus 193 ~~~k~g~~~~A~~vf~ 208 (523)
..++.|+.+-+..+++
T Consensus 115 ~A~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 115 LAAQFGHTSIVAYLIA 130 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHh
Confidence 3344455555554444
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.66 E-value=73 Score=26.55 Aligned_cols=106 Identities=14% Similarity=0.042 Sum_probs=66.1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHccHHHHhhccCChHHHHHHHHHHHHhcCCCCc-------eeHhHHHHHHHhcC
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEGVYKACSELKDHRVGKDVYDYMISIKFEGNA-------CVKRPVLDMFIKCG 144 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~gll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g 144 (523)
++-.-+..+...|.++.|+-+.+.+.... +-.|+. .++..+-+++...|
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~------------------------~~~~~~~sp~~~~~~l~~ladalf~~~ 77 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLS------------------------NNNPELFSPPQKYQLLVYHADSLFHDK 77 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------------------HHSTTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh------------------------cCCcccccHHHHHHHHHHHHHHHHccc
Confidence 33444666667777777776665543211 113442 25566788999999
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcC----------------CCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD----------------DLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----------------g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
++..|...|+++ .++...+.+.. ...+++.+---+-.+|.+.|+.++|..+++
T Consensus 78 eyrrA~~~y~qA-----------Lq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 78 EYRNAVSKYTMA-----------LQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp CHHHHHHHHHHH-----------HHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 999999999983 11111111110 122344444457788999999999999999
Q ss_pred cCCC
Q 035847 209 KIKQ 212 (523)
Q Consensus 209 ~m~~ 212 (523)
.++.
T Consensus 147 ~Ip~ 150 (167)
T 3ffl_A 147 GIPS 150 (167)
T ss_dssp TSCG
T ss_pred cCCc
Confidence 9874
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=60.51 E-value=38 Score=27.18 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHh
Q 035847 242 DGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRH 291 (523)
Q Consensus 242 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 291 (523)
+.-+..+-++++....+.|++....+.|.||-+.+++-.|..+++-++.+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44566667777778889999999999999999999999999999888663
No 265
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=59.34 E-value=37 Score=28.56 Aligned_cols=145 Identities=7% Similarity=-0.024 Sum_probs=70.3
Q ss_pred HHhcCCchHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHH
Q 035847 80 YNVLGYYEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEM 148 (523)
Q Consensus 80 ~~~~g~~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~ 148 (523)
.+..|+.+....++..-. ..| .+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 87 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEI 87 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 344566666655554322 011 444445555544 3344444565554332 1233445556677777
Q ss_pred HHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch--hHHHHHHHHHHhcCChHHHHHHHhcC-C---CCChhhHHHHH
Q 035847 149 ASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL--LVNNSLMDFYAKCRYLKVAHCKFSKI-K---QKHLVSWNAML 222 (523)
Q Consensus 149 A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~--~~~~~li~~~~k~g~~~~A~~vf~~m-~---~~~~~t~~~li 222 (523)
+..+++. - +..++. ....+.+...++.|+.+-+..+++.- . .+|..-++.|.
T Consensus 88 ~~~Ll~~-------------------~---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~ 145 (201)
T 3hra_A 88 LAYMLKH-------------------A---TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI 145 (201)
T ss_dssp HHHHHHH-------------------S---CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred HHHHHhc-------------------c---CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence 7666644 1 111110 01112244556677887777777654 2 23444455554
Q ss_pred HhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 223 AGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 223 ~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
. +.........-.++.+.+.+.|..|+.
T Consensus 146 ~------------A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 146 E------------AVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp H------------HHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred H------------HHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 4 332222233335666666677766654
No 266
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=56.92 E-value=48 Score=28.57 Aligned_cols=141 Identities=16% Similarity=0.008 Sum_probs=69.5
Q ss_pred HHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhh------Hcc--
Q 035847 29 FQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLI------DEG-- 100 (523)
Q Consensus 29 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g-- 100 (523)
|...+..|+++..+.++..-...- ..+|..-++.|. ..+..|+.+-+..+++.=. ..|
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~-------------~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 75 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLA-------------TRTDQDSRTALH-WACSAGHTEIVEFLLQLGVPVNDKDDAGWS 75 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGG-------------GCCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred HHHHHHhCCHHHHHHHHHhchhhh-------------hcCCCCCCCHHH-HHHHcCcHHHHHHHHHhCCCCCCcCCCCCC
Confidence 444556777777666654321100 023333344433 3445566554443333210 001
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+...+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 76 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----------------------- 128 (231)
T 3aji_A 76 PLHIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG----------------------- 128 (231)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred HHHHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------------------
Confidence 455555556654 4444555565554322 22344555566777766666655
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcC
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKI 210 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m 210 (523)
|..++.. ...+.+...++.|+.+-+..+++.-
T Consensus 129 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 162 (231)
T 3aji_A 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162 (231)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC
Confidence 4333321 1223455556778888777777653
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.88 E-value=39 Score=31.49 Aligned_cols=116 Identities=10% Similarity=0.126 Sum_probs=71.5
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC--hhHHHHHHHHHHHhcCC
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG--FKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~i~~~~~~~g~~ 294 (523)
..+.+|. -|...|+.++|.+.++++....+.| .+....+..+.-+.+. .+...+++..+.+.|+-
T Consensus 168 ki~~lL~------------EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 168 EIDMLLK------------EYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHH------------HHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHH------------HHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3567777 8999999999999999996432322 3455566666666433 45667778888776653
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH-HHHHHHHHhhCCHHHHHHH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY-CCMVDLLARAGQFDDTLNF 373 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~ 373 (523)
+ =+.+..|+ .+..+.++.+.-. .|+...| ..++.-+...|-+.. .+
T Consensus 235 s--------------------~~q~~~Gf--------~~vl~~l~Dl~lD---iP~A~~~la~~v~~ai~~g~l~~--~~ 281 (307)
T 2zu6_B 235 T--------------------VDQMKRGY--------ERIYNEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QL 281 (307)
T ss_dssp C--------------------HHHHHHHH--------HHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSCH--HH
T ss_pred C--------------------HHHHHHHH--------HHHHHhccHhhcc---cccHHHHHHHHHHHHHHCCCCCH--HH
Confidence 3 34444444 3344444444433 5776544 455666666776664 35
Q ss_pred HHhCC
Q 035847 374 MKKMP 378 (523)
Q Consensus 374 ~~~m~ 378 (523)
+..+|
T Consensus 282 ~~~~~ 286 (307)
T 2zu6_B 282 RDLCP 286 (307)
T ss_dssp HHTSC
T ss_pred HHhCC
Confidence 55554
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=54.56 E-value=28 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=37.7
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.+...|++++|+.+.+.+. -||...|.+| +-.+.|..+.+..-+..+..+|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 6677999999999887764 7999998877 4456777777766665554444
No 269
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=53.99 E-value=53 Score=30.90 Aligned_cols=210 Identities=10% Similarity=-0.014 Sum_probs=111.8
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
..|..-++.|..++ ..|+.+.++.+ .+.|..++ .+|..-++.|. ..+..|+.+-+.-+++.-..
T Consensus 15 ~~d~~g~t~L~~Aa-~~g~~~~v~~L----l~~g~~~~----------~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~ 78 (364)
T 3ljn_A 15 KSDDENMEKIHVAA-RKGQTDEVRRL----IETGVSPT----------IQNRFGCTALH-LACKFGCVDTAKYLASVGEV 78 (364)
T ss_dssp -CCHHHHHHHHHHH-HHTCHHHHHHH----HHTTCCTT----------CCCTTCCCHHH-HHHHHCCHHHHHHHHHHCCC
T ss_pred ccCCCCCCHHHHHH-HcCCHHHHHHH----HHcCCCcc----------ccCCCCCcHHH-HHHHcCCHHHHHHHHHCCCC
Confidence 34555555555544 56777655554 45566332 23444444444 44556776655544443211
Q ss_pred ----cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCc--------------------eeHhHHHHHHHhcC--CHHHHH
Q 035847 99 ----EG--VYKACSELKDHRVGKDVYDYMISIKFEGNA--------------------CVKRPVLDMFIKCG--RMEMAS 150 (523)
Q Consensus 99 ----~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--------------------~~~~~li~~~~~~g--~~~~A~ 150 (523)
.| .+...+..|+.+.++.+++.-...|..++. .-.+ .+...+..| +.+-+.
T Consensus 79 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 79 HSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIK 157 (364)
T ss_dssp CCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHH
Confidence 12 666677788888888888776655655443 2233 444555666 666666
Q ss_pred HHhhhccccccCchhhHhhHhhhhhhcCCCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCCC--------CChhhHHH
Q 035847 151 GEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV--NNSLMDFYAKCRYLKVAHCKFSKIKQ--------KHLVSWNA 220 (523)
Q Consensus 151 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~--~~~li~~~~k~g~~~~A~~vf~~m~~--------~~~~t~~~ 220 (523)
.+++. |..++... ..+.+...+..|+.+-+..+++.-.. +|..-++.
T Consensus 158 ~Ll~~-----------------------ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~ 214 (364)
T 3ljn_A 158 ILVQL-----------------------GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH 214 (364)
T ss_dssp HHHHH-----------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT
T ss_pred HHHHc-----------------------CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH
Confidence 66655 44443221 22345556678999888888875332 33334444
Q ss_pred HHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH---HHHHHHHhhccCChhHHHHHHH
Q 035847 221 MLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS---LSGVLAACAQVKGFKLGKEIHG 286 (523)
Q Consensus 221 li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~i~~ 286 (523)
|.. .+..|+.+ +.+.+.+.|..|+... .+.|. ..+..|..+-++.+++
T Consensus 215 L~~-------------A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 215 LHW-------------AILINWED----VAMRFVEMGIDVNMEDNEHTVPLY-LSVRAAMVLLTKELLQ 265 (364)
T ss_dssp THH-------------HHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHH-HHHHTCCHHHHHHHHH
T ss_pred HHH-------------HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHH-HHHHhChHHHHHHHHH
Confidence 433 23455543 4444555676654322 22333 3344566655555443
No 270
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.90 E-value=80 Score=24.93 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHhhhhcCCccccchhhccCC--chHHHHHHHHHHhcCCCC
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---VSWNAMLAGYALGGFREEITGFTQYGD--GETALEFFSRMIQTDMQP 260 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~--~~~A~~lf~~M~~~g~~p 260 (523)
..+.+|.-|...|++++|.+.++++..|.- +...++.. ++-+.+. .+.+..++..+...|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~------------alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVM------------VLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH------------HHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH------------HHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 356788888889999999999999876633 34444554 4444432 356778888888777655
Q ss_pred CHHH
Q 035847 261 NTIS 264 (523)
Q Consensus 261 ~~~t 264 (523)
....
T Consensus 77 ~~q~ 80 (129)
T 2nsz_A 77 IDQM 80 (129)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.90 E-value=26 Score=26.41 Aligned_cols=51 Identities=10% Similarity=-0.126 Sum_probs=38.4
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHH 292 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g 292 (523)
.+...|++++|+.+.+.+ .-||...|.+| +-.+.|..+.+..-+..+..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 667799999999887766 47999998877 4456777777777666665554
No 272
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=51.73 E-value=20 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHHHHHHHcCCcCCc
Q 035847 420 HSLVHKISEKLMRLYSEIKKIGYMKRI 446 (523)
Q Consensus 420 ~~~~~~~~~~l~~l~~~m~~~g~~pd~ 446 (523)
.|...++++.+++-..+++..|+.||.
T Consensus 12 rgdlirIl~~ieekinELk~dG~ePDI 38 (103)
T 2pk8_A 12 RGDLIRILGEIEEKMNELKMDGFNPDI 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 456677888888889999999999999
No 273
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.71 E-value=79 Score=24.96 Aligned_cols=59 Identities=8% Similarity=0.130 Sum_probs=40.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC--ChhHHHHHHHHHHHhcCCc
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK--GFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g--~~~~a~~i~~~~~~~g~~~ 295 (523)
-|...|+.++|.+.++++....+. ..+....+..++-+.+ ..+...+++..+.+.|+-+
T Consensus 16 EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 899999999999999998633222 2345556666766654 2466777777777765533
No 274
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.60 E-value=64 Score=30.74 Aligned_cols=112 Identities=10% Similarity=-0.008 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCC--CCCcchHHHHHHHHHhcCCCch-------HH
Q 035847 263 ISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGL--GTGSFVWNSLIDMYGRCGAIQK-------NE 333 (523)
Q Consensus 263 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--~p~~~~~n~li~~~~~~g~~~~-------~~ 333 (523)
.....+|.-|...++.++|.+.++++..-. .....+..++..+..- .........|+..+...|-++. .+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 346777888888888888888887775322 2234455555554422 1233345566666666666555 22
Q ss_pred HHHHHHHhHHhcCCccCHhHH-HHHHHHHHhhCCHHHHHHHHHhCCCC
Q 035847 334 GWRYFEMMKKEYNMEPAMEQY-CCMVDLLARAGQFDDTLNFMKKMPFE 380 (523)
Q Consensus 334 a~~~~~~m~~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~~~~m~~~ 380 (523)
....++.+.-. .|....| ..++.-+...|-+.. .++..+|..
T Consensus 297 vl~~ldDl~lD---iP~A~~~la~~varai~~g~l~~--~f~~~~p~r 339 (358)
T 3eiq_C 297 IYNEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QLRDLCPSR 339 (358)
T ss_dssp HHHHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCCC
T ss_pred HHHhccHhhcc---cccHHHHHHHHHHHHHHCCCCCH--HHHHhCccc
Confidence 33333333332 6887655 456677777887776 457777643
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.55 E-value=1.1e+02 Score=25.75 Aligned_cols=42 Identities=7% Similarity=-0.070 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHH
Q 035847 182 SDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLA 223 (523)
Q Consensus 182 ~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~ 223 (523)
+|..+-...+.++++.|+.+....+...+..+|...-...+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~ 165 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 165 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 344444444555555554443333444444444433333333
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.46 E-value=1.9e+02 Score=28.30 Aligned_cols=94 Identities=7% Similarity=-0.001 Sum_probs=59.7
Q ss_pred hhhccCCchHHHHHHHHHHhc--CCCCC---HHHHHHHHHHhhccCChhHHHHHHHHHHHhc--CCchHHHHhHHHhhhC
Q 035847 236 GFTQYGDGETALEFFSRMIQT--DMQPN---TISLSGVLAACAQVKGFKLGKEIHGYVLRHH--IQLSTGVGIALISIQG 308 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~--g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~ 308 (523)
.|-..|++.+|.+++.++... |..+. ...|...+..|...+++..|..+...+...- ..+++..
T Consensus 146 i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l--------- 216 (445)
T 4b4t_P 146 IKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL--------- 216 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH---------
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH---------
Confidence 778899999999999998753 32222 2456667788889999999999988764321 1111100
Q ss_pred CCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHH
Q 035847 309 LGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKK 343 (523)
Q Consensus 309 ~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~ 343 (523)
-..-|..++..+...+++ .+|.+.|.+.-.
T Consensus 217 ---k~~~~~~~~~~~~~e~~y--~~a~~~y~e~~~ 246 (445)
T 4b4t_P 217 ---KLEYYNLLVKISLHKREY--LEVAQYLQEIYQ 246 (445)
T ss_dssp ---HHHHHHHHHHHHHHHCCH--HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHh
Confidence 112345555556666666 666666555543
No 277
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.31 E-value=83 Score=25.73 Aligned_cols=67 Identities=10% Similarity=0.163 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hhHHHHHHhhhhcCCccccchhhccCC--chHHHHHHHHHHhcCCCC
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKHL---VSWNAMLAGYALGGFREEITGFTQYGD--GETALEFFSRMIQTDMQP 260 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~~~~---~t~~~li~~~~~~g~~~~i~~~~~~g~--~~~A~~lf~~M~~~g~~p 260 (523)
..+.+|.-|...|++++|.+.++++..|.- +...++.. ++-+.++ .+.+..++..+...|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~------------alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVM------------VLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH------------HHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHH------------HHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788889999999999999999877633 34445555 4444322 345778888888777655
Q ss_pred CHHH
Q 035847 261 NTIS 264 (523)
Q Consensus 261 ~~~t 264 (523)
....
T Consensus 79 ~~q~ 82 (152)
T 2ion_A 79 IDQM 82 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 278
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.30 E-value=38 Score=32.03 Aligned_cols=137 Identities=9% Similarity=0.037 Sum_probs=81.5
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhcCCchHHHHhHHHhhh------C
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------G 308 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------~ 308 (523)
-|...|+.++|.+.++++......| .+....+..+.-+. ...+.+..++..+.+.|+-+.......+-..+ .
T Consensus 20 Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~ 98 (339)
T 1ug3_A 20 EYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDME 98 (339)
T ss_dssp HHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhh
Confidence 8999999999999999986433322 33444555555442 23456667788888888776666655554444 4
Q ss_pred C-CCCcchHHHHHHHHHhc-CCCchHHHHHHHHHhHHhcCCccC---HhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 309 L-GTGSFVWNSLIDMYGRC-GAIQKNEGWRYFEMMKKEYNMEPA---MEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 309 ~-~p~~~~~n~li~~~~~~-g~~~~~~a~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
+ .|+...+-+-+-+-+.. |-+ ....++..+.+ .+.++ ......++..+.+....+.+.+++.+-+
T Consensus 99 lDiP~a~~~La~~v~~~i~~g~l---~~~~l~~~~~~--~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s~ 168 (339)
T 1ug3_A 99 IDIPHVWLYLAELVTPILQEGGV---PMGELFREITK--PLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAG 168 (339)
T ss_dssp TTCTTHHHHHHHHHGGGGSTTSC---CHHHHHHHHTT--THHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHTT
T ss_pred cCccchHHHHHHHHHHHHHCCCC---CHHHHHHHHHH--hhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHcC
Confidence 4 57766665554444433 443 22233333221 12222 2344555667777777888888888754
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.56 E-value=65 Score=26.39 Aligned_cols=117 Identities=10% Similarity=0.135 Sum_probs=70.0
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC--hhHHHHHHHHHHHhcCC
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKG--FKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~i~~~~~~~g~~ 294 (523)
..+.+|. -|...|+.++|.+.++++....+. ..+....+..++-+.+. .+....++..+.+.|+
T Consensus 11 ki~~lL~------------EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~- 76 (152)
T 2ion_A 11 EIDMLLK------------EYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST- 76 (152)
T ss_dssp HHHHHHH------------HHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHH------------HHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC-
Confidence 4566777 899999999999999999643222 23455566666666432 4566677777776554
Q ss_pred chHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHH-HHHHHHHHhhCCHHHHHHH
Q 035847 295 LSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQY-CCMVDLLARAGQFDDTLNF 373 (523)
Q Consensus 295 ~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~~ 373 (523)
+|-+.+..|| .+..+.++.+.-. .|+...| ..++.-+...|-+.. .+
T Consensus 77 -------------------is~~q~~~Gf--------~~vl~~ldDl~lD---iP~A~~~la~~v~~ai~~g~l~~--~~ 124 (152)
T 2ion_A 77 -------------------ITIDQMKRGY--------ERIYNEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QL 124 (152)
T ss_dssp -------------------SCHHHHHHHH--------HHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTCSCH--HH
T ss_pred -------------------cCHHHHHHHH--------HHHHHhChHhccC---ccchHHHHHHHHHHHHHCCCCCH--HH
Confidence 3344455554 3344445555444 5775444 445555555665553 44
Q ss_pred HHhCCC
Q 035847 374 MKKMPF 379 (523)
Q Consensus 374 ~~~m~~ 379 (523)
+..+|.
T Consensus 125 ~~~~p~ 130 (152)
T 2ion_A 125 RDLCPS 130 (152)
T ss_dssp HHTCTT
T ss_pred HHhCCC
Confidence 555544
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.32 E-value=2.1e+02 Score=27.19 Aligned_cols=148 Identities=7% Similarity=0.084 Sum_probs=79.8
Q ss_pred hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH-Hhhcc-CChhHHHHHHHHHHHhcCC
Q 035847 217 SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA-ACAQV-KGFKLGKEIHGYVLRHHIQ 294 (523)
Q Consensus 217 t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~-a~~~~-g~~~~a~~i~~~~~~~g~~ 294 (523)
...++|. -|...|+.++|...+++|......| .....+|. ++-+. ..-+.+-+++..+.. ++-
T Consensus 56 ~~~~ii~------------EYf~~~d~~Ea~~~l~eL~~p~~~~--~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~l 120 (358)
T 3eiq_C 56 TLTPIIQ------------EYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVM 120 (358)
T ss_dssp HHHHHHH------------HHHHHCCHHHHHHHHHTTTCCGGGG--GHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSC
T ss_pred HHHHHHH------------HHhcCCCHHHHHHHHHHhCCchhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCC
Confidence 5677888 9999999999999999986433322 22222333 33222 223445555555553 555
Q ss_pred chHHHHhHHHhhh------CC-CCCcchHHHHHHHHHhcCCC-------------chHHHHHHHHHhH------------
Q 035847 295 LSTGVGIALISIQ------GL-GTGSFVWNSLIDMYGRCGAI-------------QKNEGWRYFEMMK------------ 342 (523)
Q Consensus 295 ~~~~~~~~li~~y------~~-~p~~~~~n~li~~~~~~g~~-------------~~~~a~~~~~~m~------------ 342 (523)
+...+...+...+ .+ .|++..|-+.+-+-+-..+. ....+.+++++..
T Consensus 121 s~~~i~~gf~~lle~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~ 200 (358)
T 3eiq_C 121 STNDVEKSFDKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRK 200 (358)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHH
Confidence 5555555554444 11 33333333322222111100 0022322222211
Q ss_pred -Hhc----CCccC---HhHHHHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 343 -KEY----NMEPA---MEQYCCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 343 -~~~----g~~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
+.. |..|. ......++.-|...|+.+||.+.++++..
T Consensus 201 ~~~WG~g~~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 201 DSVWGSGGGQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp --CCCCCCSSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHhcCCCCCCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccC
Confidence 111 22333 24468889999999999999999999863
No 281
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.32 E-value=64 Score=27.88 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=6.5
Q ss_pred HhcCChHHHHHHHh
Q 035847 195 AKCRYLKVAHCKFS 208 (523)
Q Consensus 195 ~k~g~~~~A~~vf~ 208 (523)
++.|+.+-+..+++
T Consensus 52 ~~~~~~~~v~~Ll~ 65 (237)
T 3b7b_A 52 AENNHLEAVKYLIK 65 (237)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhCCHHHHHHHHh
Confidence 34455444444443
No 282
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=44.99 E-value=1.1e+02 Score=24.05 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=32.4
Q ss_pred CCcchHHHHHHHHHhcCCchH---HHHHHHHhhHcc-----------HHHHhhccCChHHHHHHHHHHHHh
Q 035847 68 RNVFSWTSMMGMYNVLGYYEE---IVNLFYLLIDEG-----------VYKACSELKDHRVGKDVYDYMISI 124 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~g-----------ll~~~~~~~~~~~a~~~~~~m~~~ 124 (523)
++..+--.+--++++.....+ ++.++++..+.+ +--++.+.|+++.|++..+.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444444556677666655 777777665543 444555556666666555555554
No 283
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=44.25 E-value=1.1e+02 Score=28.08 Aligned_cols=109 Identities=11% Similarity=-0.017 Sum_probs=58.7
Q ss_pred HHHHHhcCCchHHHHHHHHhhH-------cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCC
Q 035847 77 MGMYNVLGYYEEIVNLFYLLID-------EG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGR 145 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~~-------~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~ 145 (523)
+...++.|+.+....++..... .| .|...+..|+.+.++ .+++.|..++... ..+.+...+..|+
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence 3344566777776666654211 11 555666666655444 4444565554332 2234555566778
Q ss_pred HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhH--HHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 146 MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLV--NNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 146 ~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~--~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
.+-+..+++. |..++... ..+.+...+..|+.+-+..+++.-..
T Consensus 104 ~~iv~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 149 (351)
T 3utm_A 104 YEVTELLLKH-----------------------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149 (351)
T ss_dssp HHHHHHHHHT-----------------------TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHC-----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777666665 43333211 11334455677888877777775433
No 284
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.41 E-value=14 Score=24.92 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHhhhCC-CCCCcc
Q 035847 1 WVIKNVTLLLQSMDLTN-PDECTV 23 (523)
Q Consensus 1 ~~~~~A~~l~~~m~~~g-~~p~~~ 23 (523)
|-++.|+..|.++...| ++|+.+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHh
Confidence 88999999999998755 666554
No 285
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=43.04 E-value=57 Score=29.14 Aligned_cols=131 Identities=12% Similarity=0.098 Sum_probs=70.5
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHhhH--------------cc---HHHHhh--ccCChHHHHHHHHHHHHh----
Q 035847 68 RNVFSWTSMMGMYNVLGYYEEIVNLFYLLID--------------EG---VYKACS--ELKDHRVGKDVYDYMISI---- 124 (523)
Q Consensus 68 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------------~g---ll~~~~--~~~~~~~a~~~~~~m~~~---- 124 (523)
+|..-++.|..+ ++.|+.+.+..+++.... .| +..|+. +.|+.+.++.+++.-...
T Consensus 9 ~d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 9 PRLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp --CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 344455555544 456777777767664321 12 334433 347777776666654321
Q ss_pred -----cCC-CCceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh-------------
Q 035847 125 -----KFE-GNACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL------------- 185 (523)
Q Consensus 125 -----g~~-p~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~------------- 185 (523)
++. .|..-.+. +..-++.|+.+-+..+++. |..++..
T Consensus 88 ~~i~~~~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~-----------------------ga~~~~~~~~~~~~~~~~~~ 143 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTA-LHIAIERRNMTLVTLLVEN-----------------------GADVQAAANGDFFKKTKGRP 143 (273)
T ss_dssp HHHTCCCCSTTTTTCCH-HHHHHHTTCHHHHHHHHHT-----------------------TCCTTCCBCSGGGSSCSSSC
T ss_pred HHhhcccccccCCCCCH-HHHHHHcCCHHHHHHHHHC-----------------------CCCcCccccccccccccccc
Confidence 111 22233344 4445677888877777766 3333222
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHhc---CC---CCChhhHHHHHH
Q 035847 186 ---VNNSLMDFYAKCRYLKVAHCKFSK---IK---QKHLVSWNAMLA 223 (523)
Q Consensus 186 ---~~~~li~~~~k~g~~~~A~~vf~~---m~---~~~~~t~~~li~ 223 (523)
...+.+...++.|+.+-+..+++. =. .+|..-++.|..
T Consensus 144 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~ 190 (273)
T 2pnn_A 144 GFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190 (273)
T ss_dssp CCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHH
Confidence 123445666778999999988883 22 234444555554
No 286
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.98 E-value=50 Score=28.52 Aligned_cols=173 Identities=6% Similarity=-0.003 Sum_probs=90.5
Q ss_pred HHHHHhcCCchHHHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcC----CCCceeHhHHHHHHHhc
Q 035847 77 MGMYNVLGYYEEIVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKF----EGNACVKRPVLDMFIKC 143 (523)
Q Consensus 77 i~~~~~~g~~~~A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~ 143 (523)
+..-++.|+.+....+++.-. ..| .|...+..|+.+.++.+++.-..... ..|.. ..+.+...+..
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-g~t~L~~A~~~ 85 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-GQTALHIAVIN 85 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT-TCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCC-CcCHHHHHHHc
Confidence 334455566555555544310 111 55555666666555554443111100 01112 23345555677
Q ss_pred CCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh---------------HHHHHHHHHHhcCChHHHHHHHh
Q 035847 144 GRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL---------------VNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 144 g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~---------------~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
|+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++
T Consensus 86 ~~~~~v~~Ll~~-----------------------g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 142 (232)
T 2rfa_A 86 QNVNLVRALLAR-----------------------GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142 (232)
T ss_dssp TCHHHHHHHHHT-----------------------TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHhC-----------------------CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence 888777777665 3332221 12344556677889888888887
Q ss_pred cCCC---CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhhccC
Q 035847 209 KIKQ---KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQP---------NTISLSGVLAACAQVK 276 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p---------~~~t~~~ll~a~~~~g 276 (523)
.=.. +|..-++.|. ..+..|+.+-+..+++-+.+.|..+ |..-.+.+ ...++.|
T Consensus 143 ~ga~~~~~d~~g~t~L~-------------~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl-~~A~~~g 208 (232)
T 2rfa_A 143 HGADIRAQDSLGNTVLH-------------ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF-KLAGVEG 208 (232)
T ss_dssp TTCCTTCCCTTSCCHHH-------------HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH-HHHHHHT
T ss_pred CCCCCCCCCCCCCCHHH-------------HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH-HHHHHcC
Confidence 5333 3333444443 3356777877777888888877544 33333333 3344556
Q ss_pred ChhHHHHHHHH
Q 035847 277 GFKLGKEIHGY 287 (523)
Q Consensus 277 ~~~~a~~i~~~ 287 (523)
..+-++.+++.
T Consensus 209 ~~~~v~~Ll~~ 219 (232)
T 2rfa_A 209 NIVMFQHLMQK 219 (232)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 66555554443
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=39.88 E-value=8.9 Score=23.28 Aligned_cols=13 Identities=46% Similarity=1.239 Sum_probs=9.9
Q ss_pred ccc-ccccccCCCC
Q 035847 510 HHF-VDGACSCGDY 522 (523)
Q Consensus 510 h~~-~~g~csc~~~ 522 (523)
|.. +.|.|||+-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 6899999976
No 288
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=39.45 E-value=2e+02 Score=26.74 Aligned_cols=107 Identities=7% Similarity=-0.114 Sum_probs=52.9
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
.+|..+...|+ |...|..+..-+|.... ..+.....+.|..+-...+.-+. ..-..-.|-.++-+++..
T Consensus 16 ~DA~~L~~A~k--G~Gtde~~lieIL~~rs-~~q~~~I~~~Y~~~yg~~L~~dl--------~se~sG~f~~ll~~l~~~ 84 (315)
T 1dm5_A 16 EDAETLRKAMK--GIGTDEKSITHILATRS-NAQRQQIKTDYTTLFGKHLEDEL--------KSELSGNYEAAALALLRK 84 (315)
T ss_dssp HHHHHHHHHHS--SSSCCHHHHHHHHHHSC-HHHHHHHHHHHHHHHSSCHHHHH--------HHHCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHCCCHHHHH--------HhhcCccHHHHHHHHccC
Confidence 46777777775 44456654444443221 11233344444443322211000 000112466667777765
Q ss_pred CCchHHHHHHHHhhHcc-----HHHHhhccC--ChHHHHHHHHHH
Q 035847 84 GYYEEIVNLFYLLIDEG-----VYKACSELK--DHRVGKDVYDYM 121 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~g-----ll~~~~~~~--~~~~a~~~~~~m 121 (523)
-...+|..+.+.|...| ++..++... ++....+.|..+
T Consensus 85 ~~~~dA~~L~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~ 129 (315)
T 1dm5_A 85 PDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLL 129 (315)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhcCCCchhhhhhhHhcCCHHHHHHHHHHHHHH
Confidence 45557788888886655 666665543 344444555444
No 289
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.13 E-value=1.2e+02 Score=25.76 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=92.4
Q ss_pred HHHHHHhcCCchHHHHHHHHhhH-------cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcC
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLID-------EG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCG 144 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~~-------~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g 144 (523)
.+...++.|+.+....++..-.. .| .+...+..|+.+..+ .+++.|..++... ..+.+...++.|
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE----FLLQLGVPVNDKDDAGWSPLHIAASAG 84 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHH----HHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence 35666778888888888765332 11 666666677765444 4455566554321 223445566778
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhhHH
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQK---HLVSWN 219 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~~---~~~t~~ 219 (523)
+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.-..+ |...++
T Consensus 85 ~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 141 (231)
T 3aji_A 85 XDEIVKALLVK-----------------------GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141 (231)
T ss_dssp CHHHHHHHHHT-----------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred HHHHHHHHHHc-----------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence 88777666655 3333211 1123455566778888888887754332 333334
Q ss_pred HHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH---HHHHHHHHhhccCChhHHHHHHHHHHHhcCCch
Q 035847 220 AMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI---SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLS 296 (523)
Q Consensus 220 ~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~ 296 (523)
.|.. .+..|+.+ +.+.+.+.|..++.. -.+. +...+..|..+ +.+.+.+.|..++
T Consensus 142 ~L~~-------------A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 142 AMHR-------------AAAKGNLK----MVHILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHH-------------HHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHH-------------HHHcCCHH----HHHHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 4433 33455543 334444556555432 1222 33334455543 4555566676553
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.39 E-value=2.5e+02 Score=27.28 Aligned_cols=93 Identities=6% Similarity=-0.025 Sum_probs=66.8
Q ss_pred eeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhc--CCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 035847 131 CVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKK--DDLESDLLVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 131 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
.+...+-..|.+.|+++.|.+.|.+ +.. .+...-...+-.+|..+...+++..|.....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~-------------------~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ 192 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGK-------------------SLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLE 192 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHH-------------------HHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH-------------------HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3677899999999999999999998 332 1334456678888999999999998888777
Q ss_pred cCC-----CCChh------hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhc
Q 035847 209 KIK-----QKHLV------SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQT 256 (523)
Q Consensus 209 ~m~-----~~~~~------t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~ 256 (523)
... .+|.. .|..+ .+...+++.+|...|-+....
T Consensus 193 ka~~~~~~~~d~~~~~~lk~~~gl--------------~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 193 AVNSMIEKGGDWERRNRYKTYYGI--------------HCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHTTCCCTHHHHHHHHHHHH--------------GGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCHHHHHHHHHHHHH--------------HHHHhChHHHHHHHHHHHhcc
Confidence 653 12322 23333 334578899999988887653
No 291
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=37.69 E-value=1.5e+02 Score=24.97 Aligned_cols=125 Identities=9% Similarity=0.018 Sum_probs=60.4
Q ss_pred HhhhCCCCCCcc---hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchH
Q 035847 12 SMDLTNPDECTV---TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEE 88 (523)
Q Consensus 12 ~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 88 (523)
.+.+.|..++.. .-.+.|...+..|+.+.++. +.+.|..++ .+|..-++.|. ..+..|+.+-
T Consensus 9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~----Ll~~g~~~~----------~~~~~g~t~L~-~A~~~~~~~~ 73 (223)
T 2f8y_A 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKR----LLEASADAN----------IQDNMGRTPLH-AAVSADAQGV 73 (223)
T ss_dssp TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH----HHHTTCCTT----------CCCTTSCCHHH-HHHHTTCHHH
T ss_pred HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHH----HHHcCCCCC----------CcCCCCCCHHH-HHHHcCCHHH
Confidence 344555544322 12233444456677664444 445565332 23333334433 3345566554
Q ss_pred HHHHHHHhh-------Hcc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhh
Q 035847 89 IVNLFYLLI-------DEG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 89 A~~l~~~m~-------~~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+..+++.-. ..| .+...+..++.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 74 v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (223)
T 2f8y_A 74 FQILIRNRATDLDARMHDGTTPLILAARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147 (223)
T ss_dssp HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 444443211 011 555555566654 3444445565554332 23445555677787777776665
No 292
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=37.41 E-value=2.6e+02 Score=26.07 Aligned_cols=50 Identities=14% Similarity=-0.047 Sum_probs=28.9
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
.+.++-..--|..+.+.|. |...|..++..+|-.-+ .-++...++-|..+
T Consensus 249 ~~~~~~~~~fA~~L~~amk--g~GTdd~~LiriivsR~-e~dl~~Ik~~y~~~ 298 (327)
T 1w3w_A 249 KCTQNLHSYFAERLYYAMK--GAGTRDGTLIRNIVSRS-EIDLNLIKCHFKKM 298 (327)
T ss_dssp HHHHCHHHHHHHHHHHHHS--SSSCCHHHHHHHHHHHT-TTTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHhhcc--CCCCChhHeeeeeeECC-HHHHHHHHHHHHHH
Confidence 4444444456778888886 55567777776665422 23455555555443
No 293
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=37.08 E-value=1.6e+02 Score=23.61 Aligned_cols=117 Identities=11% Similarity=0.122 Sum_probs=50.3
Q ss_pred CCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 19 DECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 19 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
.|.....+.+..+ ++.|+.+.++.+ .+.|..++ .+|..-++.| ...++.|+.+-+..+++.=..
T Consensus 9 ~~~~~~~~~l~~A-~~~g~~~~v~~L----l~~g~~~~----------~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~ 72 (169)
T 2y1l_E 9 HHGSDLGKKLLEA-ARAGRDDEVRIL----MANGADVN----------AEDASGWTPL-HLAAFNGHLEIVEVLLKNGAD 72 (169)
T ss_dssp ----CHHHHHHHH-HHHTCHHHHHHH----HHTTCCTT----------CCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCcccchHHHH-HHcCCHHHHHHH----HHCCCCCC----------CCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 3344444444444 456776655544 44465322 2333334433 334455665544333332000
Q ss_pred ------cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhh
Q 035847 99 ------EG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 99 ------~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
.| .+...+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 73 ~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 135 (169)
T 2y1l_E 73 VNAVDHAGMTPLRLAALFGHLE----IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 01 444444555544 3334444554443221 22344445556666655555544
No 294
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=36.36 E-value=2.4e+02 Score=26.16 Aligned_cols=108 Identities=10% Similarity=-0.048 Sum_probs=53.2
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhc
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVL 83 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~ 83 (523)
.+|..+...|+ |...|..+...+|..... .+.....+.|..+-...+.-+ +..-..-.|-.++-+++..
T Consensus 18 ~Da~~L~~A~k--G~Gtde~~lieIL~~rs~-~q~~~I~~~Y~~~~g~~L~~d--------l~~e~sG~f~~ll~~l~~~ 86 (320)
T 1yii_A 18 ADAEALRKAMK--GMGTDEETILKILTSRNN-AQRQEIASAFKTLFGRDLVDD--------LKSELTGKFETLMVSLMRP 86 (320)
T ss_dssp HHHHHHHHHHS--SSSCCHHHHHHHHHHSCH-HHHHHHHHHHHHHHSCCHHHH--------HHHHCCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHCcCHHHH--------HhhhcCchHHHHHHHHccC
Confidence 46777777775 444566554444432211 123333344444322211000 0000112466666677665
Q ss_pred CCchHHHHHHHHhhHcc-----HHHHhhccC--ChHHHHHHHHHHH
Q 035847 84 GYYEEIVNLFYLLIDEG-----VYKACSELK--DHRVGKDVYDYMI 122 (523)
Q Consensus 84 g~~~~A~~l~~~m~~~g-----ll~~~~~~~--~~~~a~~~~~~m~ 122 (523)
-.-.+|..+.+.|...| ++..++... ++....+.|..+-
T Consensus 87 ~~~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y 132 (320)
T 1yii_A 87 ARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEY 132 (320)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCCchHHHhHHHhcCCHHHHHHHHHHHHHhh
Confidence 55667888888886655 666655443 3444555555443
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.35 E-value=1.3e+02 Score=30.32 Aligned_cols=26 Identities=8% Similarity=0.046 Sum_probs=17.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHh
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLL 96 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m 96 (523)
..+|.+++.|...+.++.|..+..+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcC
Confidence 45666667777777777776666553
No 296
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=35.36 E-value=82 Score=28.57 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCc
Q 035847 385 EPCNPDIAEHAARHLFELEPLSSG 408 (523)
Q Consensus 385 ~~~~~~~~~~~~~~l~~~~~~~~~ 408 (523)
..|+.+.|....+..++..|..++
T Consensus 112 ~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 112 VSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred hcCCHHHHHHHHHHHHhcCcccCC
Confidence 467888888888888888776655
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=35.10 E-value=1.1e+02 Score=26.86 Aligned_cols=119 Identities=10% Similarity=-0.021 Sum_probs=72.2
Q ss_pred HHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHH--hcCCchHHHHHHHHhhH----
Q 035847 25 YALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYN--VLGYYEEIVNLFYLLID---- 98 (523)
Q Consensus 25 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~A~~l~~~m~~---- 98 (523)
-+.|..+ ++.|+.+....+++.+.+.|...+... ...|..-++.|..+.. +.|+.+-+..+++.-..
T Consensus 6 ~~~L~~A-~~~g~~~~v~~ll~~l~~~~~~~~~~~------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~ 78 (260)
T 3jxi_A 6 RPILFDI-VSRGSPDGLEGLLSFLLTHKKRLTDEE------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM 78 (260)
T ss_dssp HHHHHHH-HHHTCGGGGTTHHHHHHHHTCCTTSGG------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred HHHHHHH-HHhCCHHHHHHHHHHHHhcCCCcchhh------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence 3444444 467888888888888888876322100 0011234455555542 56777777666665322
Q ss_pred -------------cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee----------------HhHHHHHHHhcCCHH
Q 035847 99 -------------EG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV----------------KRPVLDMFIKCGRME 147 (523)
Q Consensus 99 -------------~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----------------~~~li~~~~~~g~~~ 147 (523)
.| .|...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 154 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 154 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH
Confidence 23 566666677766 4455556777776543 445666777889988
Q ss_pred HHHHHhh
Q 035847 148 MASGEFE 154 (523)
Q Consensus 148 ~A~~~f~ 154 (523)
-+..+++
T Consensus 155 ~v~~Ll~ 161 (260)
T 3jxi_A 155 IVHYLTE 161 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888877
No 298
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=34.41 E-value=1.3e+02 Score=23.99 Aligned_cols=115 Identities=9% Similarity=0.064 Sum_probs=56.4
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQ- 212 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~- 212 (523)
.+...+..|+.+-+..+++. |..++.. ...+.+...+..|+.+-+..+++.-..
T Consensus 39 ~L~~A~~~~~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 95 (167)
T 3v31_A 39 PLMWAAAHGQIAVVEFLLQN-----------------------GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV 95 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-----------------------TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred HHHHHHHCCCHHHHHHHHHc-----------------------CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 44455566777766666655 3333211 112334555667777777777765332
Q ss_pred --CChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHH--HHHHHHhhccCChhHHHHHHHHH
Q 035847 213 --KHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISL--SGVLAACAQVKGFKLGKEIHGYV 288 (523)
Q Consensus 213 --~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~i~~~~ 288 (523)
+|..-++.|.. + +..|+.+ +.+.+.+.|..|+...- .+.+...+..|..+....+.+..
T Consensus 96 ~~~~~~g~t~L~~------------A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 96 NEYDWNGGTPLLY------------A-VHGNHVK----CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp TCCCTTSCCHHHH------------H-HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHH------------H-HHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 33333444433 2 3345443 33334445655543211 12333444556666666555554
Q ss_pred HH
Q 035847 289 LR 290 (523)
Q Consensus 289 ~~ 290 (523)
.+
T Consensus 159 ~~ 160 (167)
T 3v31_A 159 LK 160 (167)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.63 E-value=2.9e+02 Score=25.49 Aligned_cols=142 Identities=8% Similarity=0.068 Sum_probs=74.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc-CChhHHHHHHHHHHHhcCCchHHHHhHHHhhh------C
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQV-KGFKLGKEIHGYVLRHHIQLSTGVGIALISIQ------G 308 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y------~ 308 (523)
-|...|+.++|...++++......|..+. ..+-.+.-+. ..-+.+-.++..+.. ++-+...+...+.... .
T Consensus 12 EYf~~~d~~Ea~~~l~el~~p~~~~~~v~-~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ldDl~ 89 (307)
T 2zu6_B 12 EYFEHGDTNEVAEMLRDLNLGEMKSGVPV-LAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELA 89 (307)
T ss_dssp HHHHHCCHHHHHHHHHTTCCGGGGGGHHH-HHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHhCCcchHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhHhc
Confidence 89999999999999999865443333222 2222233332 233555666777753 5555555544444333 2
Q ss_pred C-CCCcchHHHHHHHHHhcCCC-ch------------HHHHHHHHHh---HH----------hcC----CccC---HhHH
Q 035847 309 L-GTGSFVWNSLIDMYGRCGAI-QK------------NEGWRYFEMM---KK----------EYN----MEPA---MEQY 354 (523)
Q Consensus 309 ~-~p~~~~~n~li~~~~~~g~~-~~------------~~a~~~~~~m---~~----------~~g----~~p~---~~ty 354 (523)
+ .|+...+-+.+-+-+-.... .. ..+.+.+... .. ..| ..|. ....
T Consensus 90 lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eelkkki 169 (307)
T 2zu6_B 90 LDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHLVKEI 169 (307)
T ss_dssp HHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHHHHHH
Confidence 2 34444443332222211110 00 2222222211 11 011 1121 1345
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 355 CCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 355 ~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
..++.-|...|+.+||.+.++++..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~ 194 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEV 194 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 6788899999999999999999853
No 300
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.44 E-value=75 Score=26.69 Aligned_cols=159 Identities=12% Similarity=0.068 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHH----HHHHHhcCCC--
Q 035847 140 FIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKV----AHCKFSKIKQ-- 212 (523)
Q Consensus 140 ~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~----A~~vf~~m~~-- 212 (523)
.++.|+++....++.. +..... ....+.+...+..|+.+. +.-+++.=..
T Consensus 13 Aa~~g~~~~~~~l~~~-----------------------~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK-----------------------GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHSCHHHHHHHHHH-----------------------SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHcCCHHHHHHHHhc-----------------------CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3567888877777666 322211 223345555666676543 3333332222
Q ss_pred -CChhhHHHHHHhhhhcCCccccchhhc-cCCchHHHHHHHHHHhcCCCCCHHH---HHHHHHHhhccCCh-hHHHHHHH
Q 035847 213 -KHLVSWNAMLAGYALGGFREEITGFTQ-YGDGETALEFFSRMIQTDMQPNTIS---LSGVLAACAQVKGF-KLGKEIHG 286 (523)
Q Consensus 213 -~~~~t~~~li~~~~~~g~~~~i~~~~~-~g~~~~A~~lf~~M~~~g~~p~~~t---~~~ll~a~~~~g~~-~~a~~i~~ 286 (523)
+|..-++.|.. +... ..+.....++.+-+.+.|..+|... .++.+...+..+.. ..-..+++
T Consensus 70 ~~d~~g~TpLh~------------a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~ 137 (186)
T 3t8k_A 70 SRTKEGTTLFFP------------LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137 (186)
T ss_dssp CCCTTCCCTHHH------------HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred CCCCCCCcHHHH------------HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence 33334555544 2221 2234445677777788887776532 21223222333322 33445666
Q ss_pred HHHH-hcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccC
Q 035847 287 YVLR-HHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPA 350 (523)
Q Consensus 287 ~~~~-~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~ 350 (523)
.+++ .|..++. +|..-.+.| ...++.|. .++.+++....++++++.+
T Consensus 138 ~Ll~~~gad~~~-------------~d~~G~TpL-~~A~~~~~---~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 138 LIFSQSGLQLLI-------------KDKWGLTAL-EFVKRCQK---PIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp HHHTSTTCCTTC-------------CCTTSCCHH-HHHHTTTC---HHHHHHHHHHHHHHTCCC-
T ss_pred HHHHhcCCCCcc-------------cCCCCCCHH-HHHHHcCC---HHHHHHHHHHHHHHhcccC
Confidence 7776 6665542 333333333 33344555 4566666666665566543
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.33 E-value=2.6e+02 Score=26.85 Aligned_cols=57 Identities=5% Similarity=-0.097 Sum_probs=42.4
Q ss_pred cchhhccCCchHHHHHHHHHHhcCCCCCH-----HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 234 ITGFTQYGDGETALEFFSRMIQTDMQPNT-----ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 234 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
..-|...|++.+|++++.++.+.=-+.|. ..|..-+..|...+++..++..+.....
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 34788999999999999999873212222 3355566778889999999999887755
No 302
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=32.73 E-value=2.7e+02 Score=24.83 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHhhh
Q 035847 136 VLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~ 155 (523)
.+...++.|+.+-+..+++.
T Consensus 160 ~L~~A~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 160 PIHEAARRGHVECVNSLIAY 179 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444455555555554443
No 303
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.69 E-value=1.5e+02 Score=24.55 Aligned_cols=22 Identities=5% Similarity=0.089 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHhcCC
Q 035847 190 LMDFYAKCRYLKVAHCKFSKIK 211 (523)
Q Consensus 190 li~~~~k~g~~~~A~~vf~~m~ 211 (523)
.+...++.|+.+-+..+++.-.
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~ 63 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGA 63 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCC
Confidence 4555567788888888887543
No 304
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.45 E-value=12 Score=22.95 Aligned_cols=24 Identities=29% Similarity=0.711 Sum_probs=16.0
Q ss_pred cccCCCCCcEEEEecccccCCCchhhHh
Q 035847 461 LISTSPGSPLRVIKNLRMCGDCHSPTKY 488 (523)
Q Consensus 461 l~~~~~~~~~~i~~nl~~~~d~h~~~~~ 488 (523)
++..|-+.++ +.|+|.+|+..+.+
T Consensus 6 ii~~ple~~~----~YRvC~~CgkPi~l 29 (44)
T 2lo3_A 6 LIEDPLDKPI----QYRVCEKCGKPLAL 29 (44)
T ss_dssp CCCCCCCCCC----CEEECTTTCCEEET
T ss_pred hhhcccCccc----cchhhcccCCcchH
Confidence 3444444554 78999999976653
No 305
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.65 E-value=1.9e+02 Score=26.94 Aligned_cols=177 Identities=11% Similarity=0.013 Sum_probs=90.9
Q ss_pred HHHHHHhhhCCCCCCcchH--HHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCc-chHHHHHHHHHhc
Q 035847 7 TLLLQSMDLTNPDECTVTY--ALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNV-FSWTSMMGMYNVL 83 (523)
Q Consensus 7 ~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~-~~~~~li~~~~~~ 83 (523)
.++++.+.+.|..++.... .+.|...+..|+.+.+ +.+.+.|. .++. .-++. +..-+..
T Consensus 33 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v----~~Ll~~g~-------------~~~~~~g~t~-L~~A~~~ 94 (364)
T 3ljn_A 33 TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA----KYLASVGE-------------VHSLWHGQKP-IHLAVMA 94 (364)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHH----HHHHHHCC-------------CCCCBTTBCH-HHHHHHT
T ss_pred HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHCCC-------------CccccCCCCH-HHHHHHc
Confidence 3566677777776654321 2233444456666544 44455565 2222 22333 3444566
Q ss_pred CCchHHHHHHHHhhH---------------------------cc--HHHHhhccC--ChHHHHHHHHHHHHhcCCCCcee
Q 035847 84 GYYEEIVNLFYLLID---------------------------EG--VYKACSELK--DHRVGKDVYDYMISIKFEGNACV 132 (523)
Q Consensus 84 g~~~~A~~l~~~m~~---------------------------~g--ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~ 132 (523)
|+.+-+..+++.-.. .| .|...+..| +.+ +.+.+++.|..++...
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~----~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLE----MIKILVQLGASPTAKD 170 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHH----HHHHHHHHTCCTTCCC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHH----HHHHHHHcCCCCcccC
Confidence 777766666665211 12 455555555 444 4445555576665433
Q ss_pred --HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCch--hHHHHHHHHHHhcCChHHHHHHHh
Q 035847 133 --KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDL--LVNNSLMDFYAKCRYLKVAHCKFS 208 (523)
Q Consensus 133 --~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~--~~~~~li~~~~k~g~~~~A~~vf~ 208 (523)
..+.+...+..|+.+-+..+++..+- ..+..++. ....+.+...++.|+.+-+..+++
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPS------------------KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSC------------------SSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccc------------------cccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 23445556678888888888776100 00000111 111233445567888888877776
Q ss_pred cCCC---CChhhHHHHHH
Q 035847 209 KIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 209 ~m~~---~~~~t~~~li~ 223 (523)
.=.. +|..-++.|..
T Consensus 233 ~gad~~~~d~~g~tpL~~ 250 (364)
T 3ljn_A 233 MGIDVNMEDNEHTVPLYL 250 (364)
T ss_dssp TTCCTTCCCTTSCCHHHH
T ss_pred cCCCCCCCCCCCCCHHHH
Confidence 4332 33334444443
No 306
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.47 E-value=1.1e+02 Score=24.06 Aligned_cols=106 Identities=8% Similarity=0.003 Sum_probs=59.5
Q ss_pred HHHHHHhcCCchHHHHHHHHhh-H------cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhcC
Q 035847 76 MMGMYNVLGYYEEIVNLFYLLI-D------EG--VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKCG 144 (523)
Q Consensus 76 li~~~~~~g~~~~A~~l~~~m~-~------~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g 144 (523)
.+...++.|+.+.+..+++.-. . .| .+.. +..|+.+.++ .+++.|..++.. ...+.+...++.|
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIAL----ELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 3444566777777777776610 0 11 5555 6667765444 444556555432 1223445556668
Q ss_pred CHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhc
Q 035847 145 RMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 145 ~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
+.+-+..+++. |..++.. ...+.+...++.|+.+-+..+++.
T Consensus 80 ~~~~v~~Ll~~-----------------------g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 80 FLDTLKVLVEH-----------------------GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp CHHHHHHHHHT-----------------------TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred cHHHHHHHHHc-----------------------CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 87776666655 4433211 122344555678888888888776
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.46 E-value=1.3e+02 Score=25.74 Aligned_cols=158 Identities=8% Similarity=-0.022 Sum_probs=85.7
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDD 179 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g 179 (523)
|...+..|+.+..+.+++. .|..++.. ...+.+...+..|+.+-+..+++..+. + .....
T Consensus 7 L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------~----~~~~~ 68 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE-----------L----VFEPM 68 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG-----------G----GGCCC
T ss_pred HHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCch-----------h----ccccc
Confidence 4445566776655555432 25554432 223455666778898888888776100 0 00000
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------------hhHHHHHHhhhhcCCccccchhhccCCc
Q 035847 180 LESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL----------------VSWNAMLAGYALGGFREEITGFTQYGDG 243 (523)
Q Consensus 180 ~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~----------------~t~~~li~~~~~~g~~~~i~~~~~~g~~ 243 (523)
...|.. ..+.+...+..|+.+-+..+++.-..++. .-++.|.. .++.|+.
T Consensus 69 ~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-------------A~~~~~~ 134 (232)
T 2rfa_A 69 TSELYE-GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF-------------AACVGSE 134 (232)
T ss_dssp CSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHH-------------HHHHTCH
T ss_pred cccCCC-CcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHH-------------HHHcCCH
Confidence 011111 22344556678999888888876443322 13333433 3445554
Q ss_pred hHHHHHHHHHHhcCCCCCHHH--HHHHHHHhhccCChhHHHHHHHHHHHhcCCc
Q 035847 244 ETALEFFSRMIQTDMQPNTIS--LSGVLAACAQVKGFKLGKEIHGYVLRHHIQL 295 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t--~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~ 295 (523)
+ +.+.+.+.|..|+... -.+.+...+..|+.+.+.++.+.+.+.|..+
T Consensus 135 ~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 135 E----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred H----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 3 4444555676654321 1133445567788888888889999887654
No 308
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=31.46 E-value=3e+02 Score=24.97 Aligned_cols=97 Identities=6% Similarity=-0.031 Sum_probs=56.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHhcCCCCce--eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 101 VYKACSELKDHRVGKDVYDYMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
.+...++.|+.+..+.++.. .+..++.. ...+.+...+..|+.+-+..+++.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----------------------- 80 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH----------------------- 80 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-----------------------
T ss_pred hHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHc-----------------------
Confidence 44455667888777777653 33333222 223456667778998888777766
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
|..++.. ...+.+...+..|+.+-+..+++.=.. +|...++.|..
T Consensus 81 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~ 130 (351)
T 3utm_A 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHE 130 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 4443322 122345566778999888888876433 33334455544
No 309
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=30.93 E-value=2.1e+02 Score=23.08 Aligned_cols=79 Identities=13% Similarity=0.026 Sum_probs=49.0
Q ss_pred ccCHhHHHHHHHHHHhhCCH---HHHHHHHHhCC-CCCCCC------------CCCCHHHHHHHHHHHHhhCCCCCccee
Q 035847 348 EPAMEQYCCMVDLLARAGQF---DDTLNFMKKMP-FEPSSA------------EPCNPDIAEHAARHLFELEPLSSGKVH 411 (523)
Q Consensus 348 ~p~~~ty~~li~~~~~~g~~---~~A~~~~~~m~-~~p~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~ 411 (523)
.|+..|--.+.-++.+.... .++..++++.- ..|... +-++.+.|++..+.+++.+|.|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~---- 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---- 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----
Confidence 45555544555566665543 45666666642 233322 78888888888889999998876
Q ss_pred EEEecCCCCchHHHHHHHHHHHHHHHHHcCCc
Q 035847 412 SFIAGDTSHSLVHKISEKLMRLYSEIKKIGYM 443 (523)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 443 (523)
+... .-+.+-++|.+.|++
T Consensus 112 ----------QA~~---Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 112 ----------QVGA---LKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------HHHH---HHHHHHHHHHHTTTT
T ss_pred ----------HHHH---HHHHHHHHHHHhchh
Confidence 2222 223455777788774
No 310
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=30.61 E-value=3.2e+02 Score=25.12 Aligned_cols=237 Identities=9% Similarity=-0.007 Sum_probs=111.1
Q ss_pred hHHHHHHHHhhhCCCCCCcchHHHHHHhccCCCChHHHHHHHHHHHH-hCCCcchHHHHhcCCCCCCcchHHHHHHHHHh
Q 035847 4 KNVTLLLQSMDLTNPDECTVTYALIFQRCPKLNNLELGIQVHAHLIV-CGVELCAFLGMFEKMPERNVFSWTSMMGMYNV 82 (523)
Q Consensus 4 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~ 82 (523)
++|..+...|+ |...|..+...+| +... ..+-..+...... .|-.. .+.+..--.-.|-.+|-++..
T Consensus 6 ~Da~~L~kA~k--g~Gtde~~ii~IL---~~rs-~~qr~~I~~~Y~~~~g~dL------~~~lk~elsG~fe~~l~~l~~ 73 (308)
T 2hyv_A 6 RDALNIETAIK--TKGVDEVTIVNIL---TNRS-NAQRQDIAFAYQRRTKKEL------ASALKSALSGHLETVILGLLK 73 (308)
T ss_dssp HHHHHHHHHHH--STTCCHHHHHHHH---TTSC-HHHHHHHHHHHHHHHSSCH------HHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHH---hcCC-HHHHHHHHHHHHHHhCccH------HHHHHHHcCCCHHHHHHHHcC
Confidence 56888888886 5557776654444 4332 2222233222221 12100 000000001234455555555
Q ss_pred cCCchHHHHHHHHhhHcc-----HHHHhhccC--ChHHHHHHHHHHHHhcCCCC-----ceeHhHHHHHHHhcCC-----
Q 035847 83 LGYYEEIVNLFYLLIDEG-----VYKACSELK--DHRVGKDVYDYMISIKFEGN-----ACVKRPVLDMFIKCGR----- 145 (523)
Q Consensus 83 ~g~~~~A~~l~~~m~~~g-----ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~----- 145 (523)
.--..+|..+...|...| ++..++... ++...++.|..+....+.-| ..-|..++-++.+..+
T Consensus 74 ~~~~~DA~~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~~~r~~e~~ 153 (308)
T 2hyv_A 74 TPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGS 153 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHTCCCCCCCS
T ss_pred CcHHHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHccccccccC
Confidence 444457788888887776 666666543 34455566655543222111 1124445555555443
Q ss_pred -------HHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcC--ChHHHHHHHhcCCCCChh
Q 035847 146 -------MEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCR--YLKVAHCKFSKIKQKHLV 216 (523)
Q Consensus 146 -------~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g--~~~~A~~vf~~m~~~~~~ 216 (523)
-.+|..+++. +.. +...|..++ +..++... .+....+.|..+-..+..
T Consensus 154 ~vd~~~a~~DA~~L~~A-------------------~~~-~~Gtde~~l---i~Il~~RS~~~L~~i~~~Y~~~~g~~Le 210 (308)
T 2hyv_A 154 VIDYELIDQDARDLYDA-------------------GVK-RKGTDVPKW---ISIMTERSVPHLQKVFDRYKSYSPYDML 210 (308)
T ss_dssp SCCHHHHHHHHHHHHHT-------------------TTT-SSSCCHHHH---HHHHHHSCHHHHHHHHHHHTTTCSSCHH
T ss_pred CCCccHHHHHHHHHHHH-------------------hhc-cCCCcHHHH---HHHHHhCCHHHHHHHHHHHHHHHCcCHH
Confidence 2334444433 333 344565444 44444332 244445555555433331
Q ss_pred ---------hHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 217 ---------SWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 217 ---------t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
.+-.++.+++ .+.++.....|..+++.|... ..|..++..+|..-+. .++....+.|..
T Consensus 211 ~~I~~e~sG~~~~~L~~lv---------~~~~~~~~~~A~~L~~A~~g~--GTde~~lirilv~Rs~-~~l~~I~~~Y~~ 278 (308)
T 2hyv_A 211 ESIRKEVKGDLENAFLNLV---------QCIQNKPLYFADRLYDSMKGK--GTRDKVLIRIMVSRSE-VDMLKIRSEFKR 278 (308)
T ss_dssp HHHHHHCCHHHHHHHHHHH---------HHHHCHHHHHHHHHHHHHSSS--SCCHHHHHHHHHHHTT-TTHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHH---------hccCCCcHHHHHHHHHHhccC--CCCHHHHHHHHHhcCH-HHHHHHHHHHHH
Confidence 1222222111 222222234588888888754 5678877777654322 344444444443
No 311
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=30.54 E-value=55 Score=28.07 Aligned_cols=185 Identities=10% Similarity=0.086 Sum_probs=91.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 035847 136 VLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQKHL 215 (523)
Q Consensus 136 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~~~~ 215 (523)
.+...++.|+.+....+++. -...-...|..- .+.+...++.|+.+-+..+++.-..++.
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~-------------------~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 64 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHS-------------------KPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-------------------CGGGTTCCCTTS-CCHHHHHHHTTCHHHHHHHHHTCTTCCG
T ss_pred HHHHHHHhCCHHHHHHHHhc-------------------CccccccCCCCC-CCHHHHHHHcCCHHHHHHHHhccccccc
Confidence 45556778888888888776 111001122222 2345556678899888888887643332
Q ss_pred ------hhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcC--CCCC---HHHHHHHHHHhhccCChhHHHHH
Q 035847 216 ------VSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTD--MQPN---TISLSGVLAACAQVKGFKLGKEI 284 (523)
Q Consensus 216 ------~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g--~~p~---~~t~~~ll~a~~~~g~~~~a~~i 284 (523)
..++.|.. .+..|+. ++++.+.+.| ..++ ..-.+.+. ..+..|..+ +
T Consensus 65 ~~~~~~~g~t~L~~-------------A~~~~~~----~~~~~Ll~~g~~~~~~~~~~~g~t~L~-~A~~~~~~~----~ 122 (228)
T 2dzn_A 65 DDYPDDSGWTPFHI-------------ACSVGNL----EVVKSLYDRPLKPDLNKITNQGVTCLH-LAVGKKWFE----V 122 (228)
T ss_dssp GGCCCTTSCCHHHH-------------HHHHCCH----HHHHHHHSSSSCCCTTCCCTTCCCHHH-HHHHTTCHH----H
T ss_pred cccCCCCCCCHHHH-------------HHHcCCH----HHHHHHHhCCCCcccccCCcCCCCHHH-HHHHcCCHh----H
Confidence 33444443 2345554 3445555555 2222 12222333 333445554 4
Q ss_pred HHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcC-CccCH---hHHHHHHHH
Q 035847 285 HGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYN-MEPAM---EQYCCMVDL 360 (523)
Q Consensus 285 ~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g-~~p~~---~ty~~li~~ 360 (523)
.+.+.+.|..++. +|..-++. +...+..|+. + +++.+.+. | ..++. .-. +.+..
T Consensus 123 ~~~Ll~~g~~~~~-------------~~~~g~t~-L~~A~~~~~~--~----~v~~Ll~~-g~~~~~~~d~~g~-t~L~~ 180 (228)
T 2dzn_A 123 SQFLIENGASVRI-------------KDKFNQIP-LHRAASVGSL--K----LIELLCGL-GKSAVNWQDKQGW-TPLFH 180 (228)
T ss_dssp HHHHHHTTCCSCC-------------CCTTSCCH-HHHHHHTTCH--H----HHHHHHTT-TCCCSCCCCTTSC-CHHHH
T ss_pred HHHHHHcCCCccc-------------cCCCCCCH-HHHHHHcCCH--H----HHHHHHhc-CcccccCcCCCCC-CHHHH
Confidence 4455555655432 22222333 3344556665 3 22333333 4 33332 222 23344
Q ss_pred HHhhCCHHHHHHHHHhCCCCCCCC
Q 035847 361 LARAGQFDDTLNFMKKMPFEPSSA 384 (523)
Q Consensus 361 ~~~~g~~~~A~~~~~~m~~~p~~~ 384 (523)
.++.|+.+-+.-++++.+..++..
T Consensus 181 A~~~~~~~~v~~Ll~~~ga~~~~~ 204 (228)
T 2dzn_A 181 ALAEGHGDAAVLLVEKYGAEYDLV 204 (228)
T ss_dssp HHHTTCHHHHHHHHHHHCCCSCCB
T ss_pred HHHcCCHHHHHHHHHhcCCCCCcc
Confidence 456778877777775666555543
No 312
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=30.43 E-value=2.7e+02 Score=24.11 Aligned_cols=35 Identities=9% Similarity=0.008 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChHHHHHHHh---cCC---CCChhhHHHHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFS---KIK---QKHLVSWNAMLA 223 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~---~m~---~~~~~t~~~li~ 223 (523)
+.+...++.|+.+-+..+++ .-. .+|..-++.|..
T Consensus 138 tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~ 178 (256)
T 2etb_A 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA 178 (256)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHH
Confidence 44566677899999998888 322 244445555554
No 313
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=30.18 E-value=14 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.0
Q ss_pred ceEEEeeCCcccccccccccCC
Q 035847 499 REIIMIDNYRFHHFVDGACSCG 520 (523)
Q Consensus 499 r~i~~~d~~~~h~~~~g~csc~ 520 (523)
..|-+.|.+..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4478899999999999986543
No 314
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=30.16 E-value=82 Score=27.94 Aligned_cols=21 Identities=0% Similarity=-0.260 Sum_probs=9.6
Q ss_pred HhhCCHHHHHHHHHhCCCCCCC
Q 035847 362 ARAGQFDDTLNFMKKMPFEPSS 383 (523)
Q Consensus 362 ~~~g~~~~A~~~~~~m~~~p~~ 383 (523)
++.|+.+-+. ++-+-+..++.
T Consensus 233 ~~~~~~~~v~-~Ll~~ga~~~~ 253 (282)
T 1oy3_D 233 LLRPNPILAR-LLRAHGAPEPE 253 (282)
T ss_dssp HTSSCHHHHH-HHHHTTCCCCC
T ss_pred HHcCCcHHHH-HHHHcCCCcCc
Confidence 3556654443 43344444443
No 315
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=29.46 E-value=2.1e+02 Score=23.80 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=38.5
Q ss_pred hhhccCCchHHHHHHHHHHhc-CCCCCH-------HHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 236 GFTQYGDGETALEFFSRMIQT-DMQPNT-------ISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~-g~~p~~-------~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
.+...|.++.|.-+.+-+... +..|+. .++..+-+++...+.+..|...+++.++
T Consensus 29 ~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 29 DMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 666788888888776665442 223331 3556677788888999999999888765
No 316
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=28.00 E-value=3e+02 Score=23.96 Aligned_cols=159 Identities=9% Similarity=-0.032 Sum_probs=77.0
Q ss_pred HHHHHhhhCCCCCCcc---hHHHHHHhccCCCChHHHHHHHHHHHHhCCCcchHHHHhcCCCCCCcchHHHHHHHHHhcC
Q 035847 8 LLLQSMDLTNPDECTV---TYALIFQRCPKLNNLELGIQVHAHLIVCGVELCAFLGMFEKMPERNVFSWTSMMGMYNVLG 84 (523)
Q Consensus 8 ~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~f~~~~~~~~~~~~~li~~~~~~g 84 (523)
++++.+.+.|..++.. -.+.|. ..+..|+.+.++ .+.+.|..++ .+|..-++.|..+ +..|
T Consensus 17 ~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~----~Ll~~g~~~~----------~~~~~g~t~L~~A-~~~~ 80 (261)
T 2xai_A 17 LSLRNLISQGWAVNIITADHVSPLH-EACLGGHLSCVK----ILLKHGAQVN----------GVTADWHTPLFNA-CVSG 80 (261)
T ss_dssp HHHHHHHHTTCCSSCCCTTCCCHHH-HHHHHTCHHHHH----HHHHTTCCTT----------CCCTTSCCHHHHH-HHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHH-HHHHcCCHHHHH----HHHHCCCCCC----------CCCCCCCCHHHHH-HHcC
Confidence 4556666666655432 233333 333456655443 3444565322 2333334444333 3445
Q ss_pred CchHHHHHHHHhhH-----cc--HHHHhhccCChHHHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhh
Q 035847 85 YYEEIVNLFYLLID-----EG--VYKACSELKDHRVGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 85 ~~~~A~~l~~~m~~-----~g--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
+.+-+..+++.-.. .| .+...+..|+.+ +.+.+++.|..++... ..+.+...++.|+.+-+..+++.
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp CHHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 55443333322100 01 445555556554 4444555565554332 22445555667777766666655
Q ss_pred ccccccCchhhHhhHhhhhhhcCCCCCch-hHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 156 KDFSNLSLLKHGKEIHPHHLKKDDLESDL-LVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
|..++. ....+-+...++.|+.+-+..+++.
T Consensus 157 -----------------------g~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~ 188 (261)
T 2xai_A 157 -----------------------GADVNQGKGQDSPLHAVARTASEELACLLMDF 188 (261)
T ss_dssp -----------------------TCCTTCCBTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred -----------------------CCCCCCCCCCCChHHHHHHcCCHHHHHHHHHc
Confidence 433321 1122345556677887777777765
No 317
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.46 E-value=2.9e+02 Score=26.21 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCC----hhhHHHHHHhhhhcCCccccchhhccC-CchHHHHHHHHHHhcCCCC
Q 035847 186 VNNSLMDFYAKCRYLKVAHCKFSKIKQKH----LVSWNAMLAGYALGGFREEITGFTQYG-DGETALEFFSRMIQTDMQP 260 (523)
Q Consensus 186 ~~~~li~~~~k~g~~~~A~~vf~~m~~~~----~~t~~~li~~~~~~g~~~~i~~~~~~g-~~~~A~~lf~~M~~~g~~p 260 (523)
.-.++|.=|...|++++|.+.++++..|+ .+.+..+.. ++-+.. .-+.+..++..+...|+-+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~------------aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIIL------------SLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHH------------HHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHH------------HHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 45788999999999999999999998885 234555554 332221 1245667778887776654
Q ss_pred CHHHHHHHHHHh
Q 035847 261 NTISLSGVLAAC 272 (523)
Q Consensus 261 ~~~t~~~ll~a~ 272 (523)
.......+...+
T Consensus 82 ~~~~~~Gf~~ll 93 (364)
T 3l6a_A 82 SDNFMQAFLNVL 93 (364)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444333333
No 318
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.29 E-value=3.5e+02 Score=24.54 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=50.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHHH
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTIS 264 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 264 (523)
+-+...++.|..+.+..+++.-. .+|..-++.|.. + ++.|+.+ +.+-+.+.|..||..+
T Consensus 241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~------------A-~~~g~~~----iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLL------------A-VELKLKK----IAELLCKRGASTDCGD 303 (337)
T ss_dssp CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHH------------H-HHTTCHH----HHHHHHTTSCSSTTCC
T ss_pred CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHH------------H-HHcCCHH----HHHHHHHCCCCCCCCC
Confidence 44556678899888888876422 234444455544 2 3456543 4455567788887665
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHhcCCchH
Q 035847 265 LSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297 (523)
Q Consensus 265 ~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~ 297 (523)
.| ...++.|+. ++.+.+++.|-.+|.
T Consensus 304 --~L-~~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 304 --LV-MTARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp --HH-HHHHHTTCH----HHHHHHHHTTCCC--
T ss_pred --HH-HHHHHcCCH----HHHHHHHHCcCCCCC
Confidence 33 333445655 456677888887764
No 319
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.15 E-value=4.2e+02 Score=25.04 Aligned_cols=132 Identities=7% Similarity=0.013 Sum_probs=78.3
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCC----HHHHHHHHHHhhccC-ChhHHHHHHHHHHHhcCCchHHHHhHHHhhh---
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPN----TISLSGVLAACAQVK-GFKLGKEIHGYVLRHHIQLSTGVGIALISIQ--- 307 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~----~~t~~~ll~a~~~~g-~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y--- 307 (523)
-|...|+.++|.+.++++.. |+ .+.+..+..++-+.. ..+.+-.++..+.+.|+-+.......+...+
T Consensus 21 EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l 96 (364)
T 3l6a_A 21 EYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQC 96 (364)
T ss_dssp HHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 99999999999999999853 43 344445555554432 2356667788888878777776666666555
Q ss_pred ---CC-CCCcchHHHHHHH-HHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhCC
Q 035847 308 ---GL-GTGSFVWNSLIDM-YGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKMP 378 (523)
Q Consensus 308 ---~~-~p~~~~~n~li~~-~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 378 (523)
.+ .|+...|-+-+-+ ....|-+. ...+...... |..- .-+..++..+.+....+....++++-+
T Consensus 97 ~Dl~iDiP~a~~~la~f~ar~i~~~~l~----~~~l~~~l~~-G~~~--~l~l~vl~~~~k~~G~~~l~~l~~~sg 165 (364)
T 3l6a_A 97 PKLEVDIPLVKSYLAQFAARAIISELVS----ISELAQPLES-GTHF--PLFLLCLQQLAKLQDREWLTELFQQSK 165 (364)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSC----HHHHHHHHGG-GTTT--THHHHHHHHHHHHSCHHHHHHHHHHHT
T ss_pred hHhccccccHHHHHHHHHHHHHHcCCCC----HHHHHHHhcc-cchH--HHHHHHHHHHHHhcCHHHHHHHHHHcC
Confidence 33 6777766553333 33334331 1223333333 4222 233344466666666677777776644
No 320
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=25.70 E-value=1.4e+02 Score=23.78 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCC
Q 035847 332 NEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEP 381 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p 381 (523)
.+++.+++...+. + |. ....--|--++.|.|++++|.++.+.+ ..+|
T Consensus 60 ~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 60 RLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 6888999888876 4 52 344445666888999999988887763 3444
No 321
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.35 E-value=2e+02 Score=23.17 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=40.9
Q ss_pred HHHHhcCCCch-HHHHHHHHHhHHhcCCccC--HhHHHHHHHHHHhhCCHHHHHHHHHhC-CCCCCC
Q 035847 321 DMYGRCGAIQK-NEGWRYFEMMKKEYNMEPA--MEQYCCMVDLLARAGQFDDTLNFMKKM-PFEPSS 383 (523)
Q Consensus 321 ~~~~~~g~~~~-~~a~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 383 (523)
-++.+...... .+++.+++...+. .|. ....--|--++.|.|++++|.++.+.+ ..+|+.
T Consensus 47 w~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 47 WGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 34555544311 6788899988875 342 333334566899999999999999885 567754
No 322
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=25.03 E-value=4.1e+02 Score=24.55 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHcc-----HHHHhhccC--ChHHHHHHHHHHH
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEG-----VYKACSELK--DHRVGKDVYDYMI 122 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----ll~~~~~~~--~~~~a~~~~~~m~ 122 (523)
.|-.++-++...---.+|..+.+.|...| ++..++... ++....+.|..+-
T Consensus 78 ~fe~~l~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y 135 (322)
T 2zhj_A 78 NFEQVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQY 135 (322)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHhhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 35566666665544567788888887655 666665543 3444555555543
No 323
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=24.71 E-value=1.5e+02 Score=27.69 Aligned_cols=58 Identities=9% Similarity=0.233 Sum_probs=44.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHh
Q 035847 248 EFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALIS 305 (523)
Q Consensus 248 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 305 (523)
++++.+.+.|+.|..+++.-++..+++.=.++.+..+++.+...|...-..+.-+++.
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~ 271 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILK 271 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666777889999999999999999988889999999999988874333333333333
No 324
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=24.24 E-value=3.7e+02 Score=23.73 Aligned_cols=154 Identities=6% Similarity=0.019 Sum_probs=83.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCC----CCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCHH-
Q 035847 189 SLMDFYAKCRYLKVAHCKFSKIK----QKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNTI- 263 (523)
Q Consensus 189 ~li~~~~k~g~~~~A~~vf~~m~----~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~- 263 (523)
+.+...++.|+.+-+..+++.-. .+|..-++.+.. +.........-.++++.+.+.|..++..
T Consensus 113 T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~------------a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~ 180 (276)
T 4hbd_A 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML------------TALATLKTQDDIETVLQLFRLGNINAKAS 180 (276)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH------------GGGCCCCSHHHHHHHHHHHHHSCTTCCCT
T ss_pred CHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH------------HHHHHhhhhhhHHHHHHHHHcCCCccccC
Confidence 34555678899999988888543 245555666665 4433333344556666666666444332
Q ss_pred --HHHHHHHHhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 035847 264 --SLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGTGSFVWNSLIDMYGRCGAIQKNEGWRYFEMM 341 (523)
Q Consensus 264 --t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p~~~~~n~li~~~~~~g~~~~~~a~~~~~~m 341 (523)
-.+.|..| +..|+.+ +.+.+++.|..++. +|..-++.|.-+ +..|+. + ..++ +
T Consensus 181 ~~g~tpLh~A-~~~g~~~----~v~~Ll~~gad~n~-------------~d~~G~TpLh~A-~~~g~~--~-iv~~---L 235 (276)
T 4hbd_A 181 QAGQTALMLA-VSHGRVD----VVKALLACEADVNV-------------QDDDGSTALMCA-CEHGHK--E-IAGL---L 235 (276)
T ss_dssp TTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTC-------------CCTTSCCHHHHH-HHHTCH--H-HHHH---H
T ss_pred CCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCC-------------CCCCCCCHHHHH-HHCCCH--H-HHHH---H
Confidence 22334333 3455554 44555666765542 333444444443 455665 3 3333 3
Q ss_pred HHhcCCccCHhHH--HHHHHHHHhhCCHHHHHHHHHhCCC
Q 035847 342 KKEYNMEPAMEQY--CCMVDLLARAGQFDDTLNFMKKMPF 379 (523)
Q Consensus 342 ~~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~~~~~m~~ 379 (523)
.+..|..++.... .+-+...++.|+.+-+.-+++.+++
T Consensus 236 l~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 236 LAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp HTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred HhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Confidence 3322655553211 1234445567888888888888764
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.21 E-value=1.8e+02 Score=23.27 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=17.1
Q ss_pred ccCCchHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 035847 239 QYGDGETALEFFSRMIQTDMQPNTISLSGVLAACAQVK 276 (523)
Q Consensus 239 ~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g 276 (523)
..+..-.|.++++.+.+.+...+..|.--.|+.+...|
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344445555555555444444444443444443333
No 326
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=24.19 E-value=5.9e+02 Score=26.08 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=63.6
Q ss_pred hhhccCCchHHHHHHHHHHhcCCCCCHHHHHHHHH----HhhccCChhHHHHHHHHHHHhcCCchHHHHhHHHhhhCCCC
Q 035847 236 GFTQYGDGETALEFFSRMIQTDMQPNTISLSGVLA----ACAQVKGFKLGKEIHGYVLRHHIQLSTGVGIALISIQGLGT 311 (523)
Q Consensus 236 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~p 311 (523)
.+.+. +++.|..+|....... ..+......+-. .....+...++...+......... .
T Consensus 224 rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~----------------~ 285 (618)
T 1qsa_A 224 SVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS----------------T 285 (618)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC----------------H
T ss_pred HHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC----------------h
Confidence 33343 6788888888876543 223322222222 233344244455555543332111 1
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhHHhcCCccCHhHHHHHHHHHHhhCCHHHHHHHHHhC
Q 035847 312 GSFVWNSLIDMYGRCGAIQKNEGWRYFEMMKKEYNMEPAMEQYCCMVDLLARAGQFDDTLNFMKKM 377 (523)
Q Consensus 312 ~~~~~n~li~~~~~~g~~~~~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m 377 (523)
+..-|-+ ..-.+.|++ +.|...|+.|... . .....-.-=+-+++...|+.++|..+++..
T Consensus 286 ~~~e~~~--r~Alr~~d~--~~a~~~~~~l~~~-~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 286 SLIERRV--RMALGTGDR--RGLNTWLARLPME-A-KEKDEWRYWQADLLLERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHHHH--HHHHHHTCH--HHHHHHHHHSCTT-G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHCCCH--HHHHHHHHHcccc-c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223333 333466888 8899999888653 1 122332334555677789999999888886
No 327
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=24.12 E-value=4.1e+02 Score=24.93 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 243 GETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 243 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
...|..+++.|.. ...|..++..+|..-+ ..++....+.|..
T Consensus 276 ~~~A~~L~~A~~g--~GTde~~lirIlvsRs-~~dL~~I~~~Y~~ 317 (346)
T 1hm6_A 276 MFFAEKLHQAMKG--IGTRHKTLIRIMVSRS-EIDMNDIKACYQK 317 (346)
T ss_dssp HHHHHHHHHHHSS--SSCCHHHHHHHHHHTT-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCHHHHhHHHhhCC-HHHHHHHHHHHHH
Confidence 3458888888864 5568888877765422 2345444444443
No 328
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.61 E-value=65 Score=23.26 Aligned_cols=30 Identities=10% Similarity=0.059 Sum_probs=23.2
Q ss_pred HHHHHHHHHhHHhcCCccCHhHHHHHHHHHH
Q 035847 332 NEGWRYFEMMKKEYNMEPAMEQYCCMVDLLA 362 (523)
Q Consensus 332 ~~a~~~~~~m~~~~g~~p~~~ty~~li~~~~ 362 (523)
++|...|..|..+++|.|+. ||...+....
T Consensus 17 eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~ 46 (82)
T 2dod_A 17 EARMKQFKDMLLERGVSAFS-TWEKELHKIV 46 (82)
T ss_dssp HHHHHHHHHHHHHTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcCCCC-CHHHHHHHHc
Confidence 89999999999998988885 5655554443
No 329
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.59 E-value=36 Score=30.11 Aligned_cols=98 Identities=8% Similarity=-0.120 Sum_probs=52.4
Q ss_pred HHhhccCChHHHHHHHHHHHHhcCCCCc-------eeHhHHHHHHHhc---CCHHHHHHHhhhccccccCchhhHhhHhh
Q 035847 103 KACSELKDHRVGKDVYDYMISIKFEGNA-------CVKRPVLDMFIKC---GRMEMASGEFEEKDFSNLSLLKHGKEIHP 172 (523)
Q Consensus 103 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~---g~~~~A~~~f~~~~~~~~~~~~~~~~~~~ 172 (523)
...+..|+.+..+.+++.+.+.|..++. .-.+.| ...+.. |+.+-+..+++..+-.. ...
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~~~--~~~------- 76 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKDSG--NPK------- 76 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHHTT--CSS-------
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCccc--chh-------
Confidence 3445667777777777777777765543 334444 444455 88877777776510000 000
Q ss_pred hhhhcCCC-CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 035847 173 HHLKKDDL-ESDLLVNNSLMDFYAKCRYLKVAHCKFSKIKQ 212 (523)
Q Consensus 173 ~~~~~~g~-~~d~~~~~~li~~~~k~g~~~~A~~vf~~m~~ 212 (523)
..+.. .. ..|.. ..+.+...+..|+.+-+..+++.-..
T Consensus 77 ~~~~~-~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 77 PLVNA-QCTDEFYQ-GHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp CGGGC-CCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhccc-cccccccc-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 00000 00 01111 23345556778999988888886443
No 330
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=22.78 E-value=4.6e+02 Score=24.26 Aligned_cols=41 Identities=5% Similarity=0.007 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHH
Q 035847 244 ETALEFFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGY 287 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 287 (523)
..|..+++.|. |...|..++..+|..-+. .++....+.|..
T Consensus 253 ~~A~~L~~A~~--g~GTde~~lirilv~Rs~-~~L~~i~~~Y~~ 293 (323)
T 1axn_A 253 FLAERLHRALK--GIGTDEFTLNRIMVSRSE-IDLLDIRTEFKK 293 (323)
T ss_dssp HHHHHHHHHHS--SSSCCHHHHHHHHHHHTT-TTHHHHHHHHHH
T ss_pred HHHHHHHHhcc--cCCCCHHHhhhhhhhCCH-HHHHHHHHHHHH
Confidence 45888888884 566788888877654322 344444444443
No 331
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=22.50 E-value=1.5e+02 Score=28.02 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=58.6
Q ss_pred HHHHhhccCChHHHHHHHH----HHHHhcCCCCce--eHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhh
Q 035847 101 VYKACSELKDHRVGKDVYD----YMISIKFEGNAC--VKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHH 174 (523)
Q Consensus 101 ll~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~ 174 (523)
.|...+..|+.+.++.++. .+++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 128 ~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~------------------- 188 (373)
T 2fo1_E 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA------------------- 188 (373)
T ss_dssp HHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHC-------------------
Confidence 6666677777766655543 345677665543 223445556677888877777665
Q ss_pred hhcCCCCCchh--HHHHHHHHHHhcCChHHHHHHHhc------CCCCChhhHHHHHH
Q 035847 175 LKKDDLESDLL--VNNSLMDFYAKCRYLKVAHCKFSK------IKQKHLVSWNAMLA 223 (523)
Q Consensus 175 ~~~~g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~------m~~~~~~t~~~li~ 223 (523)
|..++.. ...+.+...++.|+.+-+..+++. ....|...++.|..
T Consensus 189 ----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 189 ----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp ----TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred ----CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 4443321 112345566778888887777753 22345555566655
No 332
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.16 E-value=5.2e+02 Score=24.71 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=97.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHhhHcc--------------HHHHhhccC-ChHHHHHHHHHHHHhcCCCCceeH--
Q 035847 71 FSWTSMMGMYNVLGYYEEIVNLFYLLIDEG--------------VYKACSELK-DHRVGKDVYDYMISIKFEGNACVK-- 133 (523)
Q Consensus 71 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------------ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~-- 133 (523)
.+...|..-|.+.|+.++..+++...+.-= +++.+.... ..+.-.++....++..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345567888999999999999987765321 666666543 33444444444443321 122333
Q ss_pred ----hHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 035847 134 ----RPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESDLLVNNSLMDFYAKCRYLKVAHCKFSK 209 (523)
Q Consensus 134 ----~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~li~~~~k~g~~~~A~~vf~~ 209 (523)
.-|...|...|++.+|.+++.+ ++...-+...-.--..+|-.-+.+|...+++..+...+..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~--------------l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQ--------------LLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH--------------HHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2578899999999999999888 2222222111112255677788999999999999887765
Q ss_pred CC--------CCChhhHHHHHHhhhhcCCccccchhh-ccCCchHHHHHHHHHH
Q 035847 210 IK--------QKHLVSWNAMLAGYALGGFREEITGFT-QYGDGETALEFFSRMI 254 (523)
Q Consensus 210 m~--------~~~~~t~~~li~~~~~~g~~~~i~~~~-~~g~~~~A~~lf~~M~ 254 (523)
.. .|.+..---...|. .+. ..+++..|...|-+-.
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi----------~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGI----------LHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHH----------HHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhhccCCCCHHHHHHHHHHhhH----------HHHHhccCHHHHHHHHHHHH
Confidence 42 22222111111111 445 6889999988887653
No 333
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.68 E-value=2.3e+02 Score=27.53 Aligned_cols=82 Identities=10% Similarity=0.079 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHhhHcc------------HHHHhhccCChHHHHHHHHHHHHhcC-CCCcee------
Q 035847 72 SWTSMMGMYNVLGYYEEIVNLFYLLIDEG------------VYKACSELKDHRVGKDVYDYMISIKF-EGNACV------ 132 (523)
Q Consensus 72 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~------ 132 (523)
++..+-.-|.+.|++++|.++|.++...- +++.+...+++..+.....+....-. .+|...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677788888899999999998887642 67777778888888888777654321 122221
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhh
Q 035847 133 KRPVLDMFIKCGRMEMASGEFEE 155 (523)
Q Consensus 133 ~~~li~~~~~~g~~~~A~~~f~~ 155 (523)
|..++ +...+++..|.+.|-+
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHH
Confidence 22222 2345667777766665
No 334
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.28 E-value=40 Score=26.96 Aligned_cols=94 Identities=9% Similarity=0.020 Sum_probs=53.8
Q ss_pred HHHhhccCChHHHHHHHHHHHHhcCCC---CceeHhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcC
Q 035847 102 YKACSELKDHRVGKDVYDYMISIKFEG---NACVKRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKD 178 (523)
Q Consensus 102 l~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (523)
+...+..|+.+..+.+++. .+..+ |..-.+.| .. +..|+.+-+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L-~~-~~~~~~~~v~~Ll~~----------------------- 57 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTAL-QV-MMFGSTAIALELLKQ----------------------- 57 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHH-HH-SCTTCHHHHHHHHHT-----------------------
T ss_pred HHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHH-HH-HHcCCHHHHHHHHHC-----------------------
Confidence 3445667888888877776 22222 33334444 44 778888877777665
Q ss_pred CCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhhHHHHHH
Q 035847 179 DLESDLL--VNNSLMDFYAKCRYLKVAHCKFSKIKQ---KHLVSWNAMLA 223 (523)
Q Consensus 179 g~~~d~~--~~~~li~~~~k~g~~~~A~~vf~~m~~---~~~~t~~~li~ 223 (523)
|..++.. ...+.+...++.|+.+-+..+++.-.. +|...++.|..
T Consensus 58 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (156)
T 1bd8_A 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107 (156)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence 4433221 122345555677888888877775333 34344444443
No 335
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.52 E-value=2.1e+02 Score=22.18 Aligned_cols=42 Identities=7% Similarity=0.044 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 035847 249 FFSRMIQTDMQPNTISLSGVLAACAQVKGFKLGKEIHGYVLR 290 (523)
Q Consensus 249 lf~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 290 (523)
+|+.+....+.|+...-..-|..+...++++.|.++|-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666667777766655666667788999999999988876
No 336
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.13 E-value=4.9e+02 Score=23.55 Aligned_cols=108 Identities=6% Similarity=0.036 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCCCCcee--HhHHHHHHHhcCCHHHHHHHhhhccccccCchhhHhhHhhhhhhcCCCCCc---hhHH
Q 035847 113 VGKDVYDYMISIKFEGNACV--KRPVLDMFIKCGRMEMASGEFEEKDFSNLSLLKHGKEIHPHHLKKDDLESD---LLVN 187 (523)
Q Consensus 113 ~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d---~~~~ 187 (523)
....+...+++.|..++... ..+.+...++.|..+.+..+++. .|..++ ..-.
T Consensus 217 ~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~----------------------~~~~vn~~d~~G~ 274 (337)
T 4g8k_A 217 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----------------------EHIEINDTDSDGK 274 (337)
T ss_dssp THHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS----------------------TTCCTTCBCTTSC
T ss_pred cHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh----------------------cCCcccCcCCCCC
Confidence 33455666777777665432 23445566777888777776654 122222 1112
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhhHHHHHHhhhhcCCccccchhhccCCchHHHHHHHHHHhcCCCCCH
Q 035847 188 NSLMDFYAKCRYLKVAHCKFSKIKQKHLVSWNAMLAGYALGGFREEITGFTQYGDGETALEFFSRMIQTDMQPNT 262 (523)
Q Consensus 188 ~~li~~~~k~g~~~~A~~vf~~m~~~~~~t~~~li~~~~~~g~~~~i~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 262 (523)
+. +..-++.|+.+-+.-+++.=-.+|..+ .|. ..++.|+. ++.+-+.+.|-.||.
T Consensus 275 Tp-L~~A~~~g~~~iv~~Ll~~GAd~n~~~--~L~-------------~A~~~~~~----~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 275 TA-LLLAVELKLKKIAELLCKRGASTDCGD--LVM-------------TARRNYDH----SLVKVLLSHGAKEDF 329 (337)
T ss_dssp BH-HHHHHHTTCHHHHHHHHTTSCSSTTCC--HHH-------------HHHHTTCH----HHHHHHHHTTCCC--
T ss_pred CH-HHHHHHcCCHHHHHHHHHCCCCCCCCC--HHH-------------HHHHcCCH----HHHHHHHHCcCCCCC
Confidence 23 444567888888887776544455433 333 33455654 345556777877765
No 337
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.11 E-value=2.4e+02 Score=22.98 Aligned_cols=54 Identities=4% Similarity=0.000 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccCChhHHHHHHHHHHHhcCCchH
Q 035847 244 ETALEFFSRMIQTDMQPN-TISLSGVLAACAQVKGFKLGKEIHGYVLRHHIQLST 297 (523)
Q Consensus 244 ~~A~~lf~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~g~~~~~ 297 (523)
+++.++|..|...||--. +.-|..--..+...|++.+|.+|+..-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 458999999999988765 455666667777889999999999999998887754
No 338
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.03 E-value=1.4e+02 Score=21.21 Aligned_cols=38 Identities=8% Similarity=0.209 Sum_probs=27.6
Q ss_pred HhcCCC--CCCcchHHHHHHHHHhcCCchHHHHHHHHhhH
Q 035847 61 MFEKMP--ERNVFSWTSMMGMYNVLGYYEEIVNLFYLLID 98 (523)
Q Consensus 61 ~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 98 (523)
+++++| .|++.||+-+...+-+..-..+++.+.+++..
T Consensus 25 LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy~ 64 (81)
T 2ko4_A 25 LLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVYK 64 (81)
T ss_dssp HHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 677777 58999999888766665556677777766543
Done!