BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035848
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BVW5|TIPIN_HUMAN TIMELESS-interacting protein OS=Homo sapiens GN=TIPIN PE=1 SV=2
Length = 301
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 54 GDGGVSVSKSAIG--VKEKPKK-LPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGH 110
G+G +S G V+ PK+ + R+ PKL L+S+ GL LRH K++G+GH
Sbjct: 37 GEGTEPDEESGNGAPVRVPPKRTVKRNIPKLDAQRLISERGLP-ALRHVFDKAKFKGKGH 95
Query: 111 EVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGDPTK 170
E DL LI W L P F+ F+ +VE + + + V+ C++ +R D
Sbjct: 96 EAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKRIR------LDLPI 149
Query: 171 LHEAAVEHDGPVDEQAPAEAMSSERQP 197
LHE V ++ V E + S+E P
Sbjct: 150 LHEDFVSNNDEVAENNEHDVTSTELDP 176
>sp|Q5F416|TIPIN_CHICK TIMELESS-interacting protein OS=Gallus gallus GN=TIPIN PE=2 SV=1
Length = 283
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 72 KKLPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLP 131
K + RS PKL + L+S+ GL LRH K++G+GHE DL L+ W L P
Sbjct: 65 KAVKRSIPKLDANRLVSERGLP-ALRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFP 123
Query: 132 YYSFDHFVSKVEQVAASRRVKMCIRDLR 159
FD F+ +VE + + V+ C++ +R
Sbjct: 124 KLQFDDFIDRVESLGNKKEVQTCLKRIR 151
>sp|Q3ZCC4|TIPIN_BOVIN TIMELESS-interacting protein OS=Bos taurus GN=TIPIN PE=2 SV=1
Length = 290
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 8/115 (6%)
Query: 71 PKK-LPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHL 129
PK+ + R+ PKL + L+S+ GL LRH K++G+GHE DL LI W L
Sbjct: 56 PKRTVKRNIPKLNAERLISERGLP-ALRHVFEKAKFKGKGHEAEDLKTLIRHMEHWAHRL 114
Query: 130 LPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGDPTKLHEAAVEHDGPVDE 184
P F+ F+ +VE + + V+ C++ +R D LHE V ++ V+E
Sbjct: 115 FPKLQFEDFIDRVECLGNKKEVQTCLKRIR------LDLPILHEDFVSNNDEVEE 163
>sp|Q6DBR4|TIPIN_DANRE TIMELESS-interacting protein OS=Danio rerio GN=tipin PE=2 SV=1
Length = 294
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 50 GSGVGDGGVSVSKSAIGVKEKPKKLPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRG 109
G+ G+ VSK A K + + R RPKL + L+S+ GL LR K++G+G
Sbjct: 43 GNAEGEEEGEVSKLAEVPVAKRRTVKRPRPKLDANRLISEKGLP-ALRTLFEDVKFKGKG 101
Query: 110 HEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGDPT 169
HE +L L+ W L P F+ F+ KVE + + V+ C++ +R D
Sbjct: 102 HETENLKLLMLKMENWAHRLYPKMQFEEFIDKVENLGGKKEVQTCLKRIR------LDMP 155
Query: 170 KLHEAAVEHDGPVDEQAPAEAMSS 193
HE V + + Q P E++ S
Sbjct: 156 ITHEDYVAEEAEI--QVPEESVPS 177
>sp|Q91WA1|TIPIN_MOUSE TIMELESS-interacting protein OS=Mus musculus GN=Tipin PE=1 SV=2
Length = 278
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 63 SAIGVKEKPKK-LPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGL 121
S GV PK+ + R+ PKL L S+ GL LRH K++G+GHE DL LI
Sbjct: 45 SGSGVPVPPKRTVKRNLPKLDATRLTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRH 103
Query: 122 YSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLR 159
W L P F+ F+ +VE + + V+ C++ +R
Sbjct: 104 MEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKRIR 141
>sp|Q4QR88|TIPIN_RAT TIMELESS-interacting protein OS=Rattus norvegicus GN=Tipin PE=2
SV=1
Length = 276
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 71 PKKL-PRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHL 129
PK++ R+ PKL L S+ GL LRH K++G+GHE DL LI W L
Sbjct: 53 PKRIVKRNIPKLDATRLTSERGLP-ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRL 111
Query: 130 LPYYSFDHFVSKVEQVAASRRVKMCIRDLR 159
P F+ F+ +VE + + V+ C++ +R
Sbjct: 112 FPKLQFEDFIDRVENLGNKKEVQTCLKRIR 141
>sp|Q0UJ25|CSM3_PHANO Chromosome segregation in meiosis protein 3 OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=CSM3 PE=3 SV=1
Length = 244
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 43 ASGGGGGGSGVG-DGGVSVSKSAIGVKEKPKKLPRSRPKLTPDLLLSDDGLGFVLRHFPR 101
+ G G G G+G D + ++K I + PKL + LLSD G+ + R
Sbjct: 41 SKGSGNAGDGLGIDEEIIITKKRIPI-----------PKLDDNRLLSDPGIPRLRRISKD 89
Query: 102 AFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDR 161
+++G+GHE D+ ++ +Y W L P F ++ +E+V ++R++M +R
Sbjct: 90 RLRFKGKGHEYGDIARMLNMYQLWLDDLYPRAKFADALTIIEKVGHTKRMQM----MRKE 145
Query: 162 VANGGDPTKLHEAAVEHDGPVDEQAPAEAMSSE 194
+ G P + E V QAP ++E
Sbjct: 146 WIDEGKPRRTSAYEEEDADEVVVQAPTTEQATE 178
>sp|O14350|SWI3_SCHPO Swi1-interacting protein swi3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=swi3 PE=1 SV=2
Length = 181
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 65 IGVKEKPK--KLPRSR-PKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGL 121
+G++E P K PR R K + L+S++G+ LR R K +G+GHE DL L+G+
Sbjct: 33 LGLEENPDSVKKPRKRLAKFDEERLISENGIP-KLRKMMRKVKLKGKGHEAKDLKQLLGM 91
Query: 122 YSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVA--NGGD 167
Y W L P +FD +S ++ + R VK+ R + +A NG D
Sbjct: 92 YHIWTHELYPRATFDDSISYLKTLGKHRSVKVRRRGWINEIAVENGSD 139
>sp|Q0CU66|CSM3_ASPTN Chromosome segregation in meiosis protein 3 OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=csm3 PE=3 SV=2
Length = 302
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 28/194 (14%)
Query: 28 SSSAPSNSNFPSNNTASGGGGGGSGVGDGGVSVSKSAIGVKEKPKKLPRSRPKLTPDLLL 87
SS SN N P + + G G G D V V++ K+ P + KL LL
Sbjct: 33 ESSTRSNINAPQTSESRGLGLGL----DDEVKVTR---------KRQPIA--KLDEGRLL 77
Query: 88 SDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAA 147
S G+ + R + K++G+GHE SD L+ Y W L P F ++ +E++
Sbjct: 78 SQAGIPKLRRSAKQKLKFKGKGHEFSDAARLLNFYQLWLDDLFPRAKFTDGLAMIEKLGH 137
Query: 148 SRRVKMCIRDLRDRV---ANGGDPTKLHEAAVEHDGPVDEQA--PAEAMSSERQPHQQDP 202
S+R++ R+ D+ D L EA H A P++ S+ RQ
Sbjct: 138 SKRIQTMRREWIDQEKPRQRDDDDEPLQEAEGSHHNETSNAADQPSDRQSNSRQ------ 191
Query: 203 ASNVHAADDFNDLF 216
+ H DD NDLF
Sbjct: 192 --SPHPNDDSNDLF 203
>sp|Q0IHI4|TIPIN_XENLA TIMELESS-interacting protein OS=Xenopus laevis GN=tipin PE=2 SV=1
Length = 360
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 39 SNNTASGGGGGGSGVGDGGVSVSKSAIGVKEKPKK--LPRSRPKLTPDLLLSDDGLGFVL 96
+++ A G + G + + A KP + + R +PKL L S GL L
Sbjct: 34 ADDEAEDVANGDDWTENAGQTQREEA----PKPARRVVKRPQPKLDGQRLASQRGLP-AL 88
Query: 97 RHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIR 156
RH K++G+GHE DL L+ W L P F+ F++++E + + V+ C++
Sbjct: 89 RHMFDDVKFKGKGHETEDLKILLRQMENWAHRLFPKLQFEDFLNRLESMGNKKEVQTCLK 148
Query: 157 DLR 159
+R
Sbjct: 149 KIR 151
>sp|Q2H3R6|CSM3_CHAGB Chromosome segregation in meiosis protein 3 OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=CSM3 PE=3 SV=1
Length = 431
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 15/155 (9%)
Query: 72 KKLPRS-RPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLL 130
KK PR+ R KL LLSD G+ + + PR K +G+GHE SD L+ Y EW L
Sbjct: 64 KKKPRAPRVKLDETRLLSDKGIPKLRKMAPR-LKLKGKGHEFSDAARLLSFYQEWLDDLF 122
Query: 131 PYYSFDHFVSKVEQVAASRRVKMC----IRDLRDRVANGGDP--TKLHEAAVEHDGPVDE 184
P +F ++ VE+ ++ I +L+ R A D ++H AV GP +
Sbjct: 123 PKATFLDALAMVEKTGHKTTMRSARQKWIDELKPRAAIEEDEEDNRIHRGAV---GP--Q 177
Query: 185 QAPAEAMSSERQPHQQDPASNVHAADDF--NDLFN 217
Q P A E + DD +DL+N
Sbjct: 178 QPPKVASIFETTAKAAGERAKTPTTDDLFGDDLYN 212
>sp|A1C8Y9|CSM3_ASPCL Chromosome segregation in meiosis protein 3 OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=csm3 PE=3 SV=1
Length = 267
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 59 SVSKSAIGVKEKPKKLPRSRP--KLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLG 116
++S +G+ E+ K + +P KL LLS G+ + R K+RGRGHE SD
Sbjct: 51 AMSGLGLGLDEEVKVTKKRQPIAKLDERRLLSQPGIPKLRRTAKAKLKFRGRGHEFSDAA 110
Query: 117 HLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGDPTKLHEAAV 176
L+ Y W +L P F ++ +E++ S+R++ R+ + T + +
Sbjct: 111 RLLNFYQLWLDNLFPRAKFADGLAMIERLGHSKRLQTIRREWIEE-EKPQISTDIQAGSP 169
Query: 177 EHDGPVDEQAPAEAMSSE 194
+ + P D Q A++SE
Sbjct: 170 QINLPADTQTDHTALASE 187
>sp|Q1DME8|CSM3_COCIM Chromosome segregation in meiosis protein 3 OS=Coccidioides immitis
(strain RS) GN=CSM3 PE=3 SV=2
Length = 337
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 14/190 (7%)
Query: 50 GSGVGDGGV-SVSKSAIGVKEKPKKLPRSRP-KLTPDLLLSDDGLGFVLRHFPRAFKYRG 107
SG G G + + IG++E R+ P KL + LLS G+ + R K++G
Sbjct: 33 ASGTGTGSTENKNDDLIGLEEIKITRKRAPPVKLDENRLLSQAGIPKLRRSAKTKLKFKG 92
Query: 108 RGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGD 167
+ HE SD+ L+ Y W L P F +S +E++ ++R+++ +R + G
Sbjct: 93 KRHEFSDVARLLNFYQLWLDDLYPRAKFADGLSIIEKLGHTKRMQV----MRKEWIDEGK 148
Query: 168 PTK-LHEAAV-------EHDGPVDEQAPAEAMSSERQPHQQDPASNVHAADDFNDLFNKV 219
P + L+++ V ++ G D P +R Q PA H D +
Sbjct: 149 PGRNLYDSNVTYLDPNSDNRGDKDTADPTIPSIFQRTLEQSAPAMEAHRNDQAESTHSPK 208
Query: 220 YRTATEVSIF 229
+ +E+ IF
Sbjct: 209 RLSDSEIPIF 218
>sp|Q8INX3|TIPIN_DROME Protein TIPIN homolog OS=Drosophila melanogaster GN=CG10336 PE=2
SV=2
Length = 307
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 6/127 (4%)
Query: 34 NSNFPSNNTASGGGGGGSGV----GDGGVSV-SKSAIGVKEKPKKLPRSRPKLTPDLLLS 88
N N P++ G G + D GV S+ A V+ K + + RP+LT + L
Sbjct: 15 NDNIPTDPDQLPSDGEGEKLFADDEDNGVEPGSQDAQIVEPKKRAVRNPRPRLTVETLRG 74
Query: 89 DDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAAS 148
G+ + +F + K++G+G+E +DL ++ W + P Y+FD ++ +E++
Sbjct: 75 PRGIQTIEDYF-KDIKFKGKGYEKTDLDEVLRRLQHWGHRMYPTYTFDDVLNNIERLGKK 133
Query: 149 RRVKMCI 155
+ +++ +
Sbjct: 134 KPLQVHM 140
>sp|A4DA84|CSM3_ASPFU Chromosome segregation in meiosis protein 3 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=csm3 PE=3 SV=1
Length = 270
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 65 IGVKEKPKKLPRSRP--KLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLY 122
+G+ E+ K + +P KL LLS G+ + R + +++G+GHE SD L+ Y
Sbjct: 57 LGLDEEVKVTKKRQPVAKLDESRLLSQPGIPKLRRTAKKKLRFKGKGHEFSDAARLLNFY 116
Query: 123 SEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDL------RDRVANGGDPTKLHEAA- 175
W L P F ++ +E++ S+R++ ++ +D N D K E++
Sbjct: 117 QLWLDDLFPRAKFADGLAIIERLGHSKRLQAMRKEWIDEEKPKDASENHNDVLKASESSG 176
Query: 176 VEHDGPV 182
+ D PV
Sbjct: 177 SQSDDPV 183
>sp|A1D9E6|CSM3_NEOFI Chromosome segregation in meiosis protein 3 OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=csm3 PE=3 SV=1
Length = 270
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 65 IGVKEKPKKLPRSRP--KLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLY 122
+G+ E+ K + +P KL LLS G+ + R + +++G+GHE SD L+ Y
Sbjct: 57 LGLDEEVKVTKKRQPVAKLDESRLLSQPGIPKLRRTAKKKLRFKGKGHEFSDAARLLNFY 116
Query: 123 SEWHSHLLPYYSFDHFVSKVEQVAASRRVKMCIRDLRD 160
W L P F ++ +E++ S+R++ ++ D
Sbjct: 117 QLWLDDLFPRAKFADGLAIIERLGHSKRLQAMRKEWID 154
>sp|A4RCW0|CSM3_MAGO7 Chromosome segregation in meiosis protein 3 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CSM3 PE=3
SV=1
Length = 357
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 30 SAPSNSNFPSNNTASGGGGGGSGVGDGGVSVSKSAIGVKEKPKKLPRSRPKLTPDLLLSD 89
++P+NS N + GG DGG+ + + K ++PR KL LLSD
Sbjct: 29 ASPTNS---PNQSPKAKGGAKRSEPDGGLGIDEEVSVAKRA--RVPRV--KLDETRLLSD 81
Query: 90 DGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQV 145
G+ LR + +G+GHE SD L+ Y W L P F ++ VE+
Sbjct: 82 KGIP-ALRKRAGTLRLKGKGHEFSDAARLLSFYQLWLDDLFPKAKFLDALAMVEKA 136
>sp|Q6FU57|CSM3_CANGA Chromosome segregation in meiosis protein 3 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=CSM3 PE=3 SV=1
Length = 309
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 73 KLPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPY 132
K+ R + KLT + LLS +GL +V++H P+ + +L H+I Y W L P
Sbjct: 46 KVRRPQVKLTAERLLSPNGLPYVMKHAPKRVRISKSRSTYKNLEHIIQFYQLWAHELFPK 105
Query: 133 YSFDHFV 139
F FV
Sbjct: 106 AKFKDFV 112
>sp|Q7SHE8|CSM3_NEUCR Chromosome segregation in meiosis protein 3 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=csm-3 PE=3 SV=1
Length = 409
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 72 KKLPRSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLP 131
KK R KL LLSD G+ LR K +G+GHE SD L+ Y EW L P
Sbjct: 61 KKARVPRVKLDDARLLSDKGIP-KLRKTASKLKLKGKGHEFSDAARLLSFYQEWLDDLFP 119
Query: 132 YYSFDHFVSKVEQVAASRRVKMCIRDLRDRVANGGDP 168
+F ++ E+ K +R+ R + G P
Sbjct: 120 KATFVDALAMCEKAGH----KTTLRNARLKWIAEGKP 152
>sp|Q75DC6|CSM3_ASHGO Chromosome segregation in meiosis protein 3 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CSM3 PE=3 SV=1
Length = 240
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 38 PSNNTASGGGGGGSGVGDGGVS-VSKSAIGVKEKPKKLPRSRPKLTPDLLLSDDGLGFVL 96
P + A+G GGS ++ + SAI V++ R+ KL + L+S GL ++L
Sbjct: 6 PLEDEAAGTELGGSPADPATLTEIDPSAIQVRKT-----RTVVKLDCERLVSKKGLPYLL 60
Query: 97 RHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSFDHFVSKVEQVAASRRV----- 151
++ P+ + R +L H++ Y W L P F FV+ +++ + R
Sbjct: 61 KNAPKHARISKRRDTYGNLCHVLQFYQLWAHELYPKAKFKDFVALCDRLGKTDRQLRAYR 120
Query: 152 KMCIRDLRDRVANGGDP 168
IR+ A G DP
Sbjct: 121 MQLIREELGLAAEGLDP 137
>sp|Q6C656|CSM3_YARLI Chromosome segregation in meiosis protein 3 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CSM3 PE=3 SV=1
Length = 368
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 80 KLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLP---YYSFD 136
KL ++ D GL L+H +G GHEV DLG L+ +Y W L P + S
Sbjct: 49 KLDDTRMMDDKGLP-ALKHLCTKVNLKGNGHEVGDLGRLLDMYQMWSHDLFPKGQFKSLY 107
Query: 137 HFVSKVEQVAASRRVKMCIRDLRDRVANGGD 167
SK + A R +++ D R D
Sbjct: 108 PLTSKAGRTATVRGLRLAWIDEEQRKKQTAD 138
>sp|Q04659|CSM3_YEAST Chromosome segregation in meiosis protein 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CSM3 PE=1
SV=1
Length = 317
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 76 RSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSF 135
R + KLT + LLSD GL +VL++ + + + + +L ++I Y W L P F
Sbjct: 49 RPQVKLTAEKLLSDKGLPYVLKNAHKRIRISSKKNSYDNLSNIIQFYQLWAHELFPKAKF 108
Query: 136 DHFVSKVEQVAAS 148
F+ + V +
Sbjct: 109 KDFMKICQTVGKT 121
>sp|Q6CIH2|CSM3_KLULA Chromosome segregation in meiosis protein 3 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CSM3 PE=3 SV=1
Length = 299
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 76 RSRPKLTPDLLLSDDGLGFVLRHFPRAFKYRGRGHEVSDLGHLIGLYSEWHSHLLPYYSF 135
+ R KLT + LLS GL +V+ H P++ + +L + + Y W +L P F
Sbjct: 58 KPRVKLTAEKLLSTKGLPYVMEHAPKSCRISKHKTAYDNLTNFLQFYQLWAHNLYPKAKF 117
Query: 136 DHFVSKVEQVAASRR 150
F S E + + +
Sbjct: 118 KDFTSLCESLGKTDK 132
>sp|Q94901|LARK_DROME RNA-binding protein lark OS=Drosophila melanogaster GN=lark PE=1
SV=1
Length = 352
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 8 PTGCFKCGRPGHWSRDCPSSSSSAPSNSNFPSNNTASG 45
P C++CGR GHWS++CP SA PS +A G
Sbjct: 167 PEQCYRCGRSGHWSKECPRLYGSAGGGREPPSPLSAGG 204
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 9 TGCFKCGRPGHWSRDCP----SSSSSAPSNSNFPSNNTASGGGGG 49
TGC++CG+ GHWS++CP S PS+ F SGG G
Sbjct: 160 TGCYRCGQEGHWSKECPLDQNGSYREGPSSEGFGPVRFDSGGDRG 204
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q4R979|RBM4_MACFA RNA-binding protein 4 OS=Macaca fascicularis GN=RBM4 PE=2 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q9BWF3|RBM4_HUMAN RNA-binding protein 4 OS=Homo sapiens GN=RBM4 PE=1 SV=1
Length = 364
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 16/17 (94%)
Query: 9 TGCFKCGRPGHWSRDCP 25
+GC++CG+ GHWS++CP
Sbjct: 160 SGCYRCGKEGHWSKECP 176
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 9 TGCFKCGRPGHWSRDCPSSSS 29
+GC++CG+ GHWS++CP S
Sbjct: 160 SGCYRCGKEGHWSKECPVDRS 180
>sp|P24107|POL_HV2CA Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate CAM2) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 16/59 (27%)
Query: 10 GCFKCGRPGHWSRDCPSSSSS----------------APSNSNFPSNNTASGGGGGGSG 52
GC+KCG+PGH +CP + PS++ +N+T G G +G
Sbjct: 411 GCWKCGKPGHIMTNCPDRQAGFLRDWPLGKEAPQFPRGPSSTGANTNSTPIGSSSGSTG 469
>sp|P0C211|POL_HTL1L Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro-pol PE=3 SV=2
Length = 1462
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
>sp|P14078|POL_HTL1C Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro-pol PE=3 SV=3
Length = 1462
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
>sp|P03362|POL_HTL1A Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 1 (strain
Japan ATK-1 subtype A) GN=gag-pro-pol PE=1 SV=3
Length = 1462
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP
PE=2 SV=1
Length = 172
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRTGHWARECPT 21
>sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3
SV=1
Length = 2180
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 KAAPTGCFKCGRPGHWSRDCPSSSSS 30
+ P CF CG+ GH+SR+CP + S
Sbjct: 1107 RQKPRSCFTCGKIGHFSRNCPQNKKS 1132
>sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd)
PE=3 SV=1
Length = 2179
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 5 KAAPTGCFKCGRPGHWSRDCPSSSSS 30
+ P CF CG+ GH+SR+CP + S
Sbjct: 1106 RQKPRSCFTCGKIGHFSRNCPQNKKS 1131
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp
PE=2 SV=2
Length = 178
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRSGHWARECPT 21
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus
GN=Cnbp PE=2 SV=1
Length = 177
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRSGHWARECPT 21
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP
PE=2 SV=1
Length = 177
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRSGHWARECPT 21
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP
PE=1 SV=1
Length = 177
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRSGHWARECPT 21
>sp|Q82850|GAG_JEMBR Gag polyprotein OS=Jembrana disease virus GN=gag PE=3 SV=1
Length = 436
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 3/26 (11%)
Query: 11 CFKCGRPGHWSRDCPSSS---SSAPS 33
CFKCG+PGH R+C S + SSAPS
Sbjct: 388 CFKCGKPGHLQRNCKSKNGRRSSAPS 413
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 11 CFKCGRPGHWSRDCPS 26
CFKCGR GHW+R+CP+
Sbjct: 6 CFKCGRSGHWARECPT 21
>sp|P10274|PRO_HTL1A Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (strain Japan
ATK-1 subtype A) GN=gag-pro PE=1 SV=3
Length = 651
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
>sp|P14074|PRO_HTL1C Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (isolate
Caribbea HS-35 subtype A) GN=gag-pro PE=3 SV=3
Length = 651
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
>sp|P0C210|PRO_HTL1L Gag-Pro polyprotein OS=Human T-cell leukemia virus 1 (isolate
Melanesia mel5 subtype C) GN=gag-pro PE=1 SV=2
Length = 651
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 11 CFKCGRPGHWSRDC 24
CF+CG+ GHWSRDC
Sbjct: 357 CFRCGKAGHWSRDC 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,377,871
Number of Sequences: 539616
Number of extensions: 4645049
Number of successful extensions: 41876
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 38188
Number of HSP's gapped (non-prelim): 2594
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)