BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035852
(960 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 173 bits (438), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 203/701 (28%), Positives = 305/701 (43%), Gaps = 119/701 (16%)
Query: 287 TSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQ--GRISSVLLENLSSIQSLD 342
SL LDLS N S + L S L++L++SSN L G++S L L+S++ LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVLD 157
Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
LS N S+SG + V VL+ GC L+ L +S +
Sbjct: 158 LSAN-------------------SISGANV----VGWVLS--DGCGE--LKHLAISGNKI 190
Query: 403 SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
SG + + + L +D+S N+ S +P+ LG S+L++LDIS N+L+G S +
Sbjct: 191 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 246
Query: 463 SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDS 521
+ L S N P +P+ L+ L L P +L + L LD+S +
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP--NLTEVSQLGTLDLSANNLSGQLPL-- 577
+P F+ S + L+LS+N GE+P L ++ L LDLS N SG+LP
Sbjct: 305 HFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 578 --LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
L+++++ LDLS N SG IL +C T Q + L++N G+IP N L+
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELV 421
Query: 636 VLRLDNNKFTGKLPTSLGA------------------------XXXXXXXXXXXXXXXGT 671
L L N +G +P+SLG+ G
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 672 LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731
+P L NCT L I + N +G +P WIG R + IL L +N F G P EL L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 732 KILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791
L L N +GTIP A F S I ++F ++ I +++E
Sbjct: 541 IWLDLNTNLFNGTIPA--------AMFKQSGKIA-----ANFIAGKRYVYIKNDGMKKEC 587
Query: 792 ITLEGKTLTFKAVL-----RLLTN--IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844
G L F+ + RL T ++++ + G + L++S+N SG
Sbjct: 588 HG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 845 RIPENIGAMAL------------------------LESLDFSSNRLEGEIPKNTVNLVFL 880
IP+ IG+M L LD SSN+L+G IP+ L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 881 SHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKK 921
+ ++S NNLSG +P+ QF TF + ++ + LCG L +
Sbjct: 707 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 232/510 (45%), Gaps = 121/510 (23%)
Query: 397 LSNTTLSGSLTNQIGKFKV---LNSVDLSENSISGQVPW--SLGKLSSLRYLDISNNQLN 451
LSN+ ++GS++ FK L S+DLS NS+SG V SLG S L++L++S+N L+
Sbjct: 84 LSNSHINGSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139
Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
+ + S LK N LE LDL + + S
Sbjct: 140 -----------------FPGKVSGGLKLN-------SLEVLDLSANSI---------SGA 166
Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
++V +SD + +L++S N+I G++ +++ L LD+S+NN
Sbjct: 167 NVVGWVLSDG-------------CGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNF 212
Query: 572 SGQLPLLA--SNVMVLDLSKNKLSGSILHFV--CHETNGTRLTQIINLEDNLLAGEIPDC 627
S +P L S + LD+S NKLSG + C E +++N+ N G IP
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL------KLLNISSNQFVGPIPP- 265
Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDI 687
+ + L L L NKFTG++P L G C L +D+
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDL 301
Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIP 746
N F G VP + G + L L SN F G P++ L + LK+L L+ N SG +P
Sbjct: 302 SGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 747 TCISNFTAMATFLGSDSIYTIQYPSD-FSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
++N +A S+ T+ S+ FS P I + TL+
Sbjct: 361 ESLTNLSA--------SLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQ---------- 397
Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
+ L NN F+G+IP ++ EL SL+LS N+ SG IP ++G+++ L L N
Sbjct: 398 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 866 LEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
LEGEIP+ + + L + +N+L+GE+P
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 198/764 (25%), Positives = 312/764 (40%), Gaps = 100/764 (13%)
Query: 35 EREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQA 94
E L+SFK L D N L W + + C + GV C + ++L P + G A
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLS-SKPL--NVGFSA 68
Query: 95 KESSALV-----------GKINPALLDFE---HLIYLNLSYNDFKG-IQIPRFLGSMGNL 139
SS L IN ++ F+ L L+LS N G + LGS L
Sbjct: 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128
Query: 140 RFLDLSGA--GFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV------EDLGWXXXXXXXX 191
+FL++S F G + + L++L+ L+L N + G V + G
Sbjct: 129 KFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 192 XXXXXGVDLSKVSN-------------GPLVTNALRSLLVLQLAGCQLSHFPPLSVANFS 238
VD+S+ N G +L L ++G +LS +++ +
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 247
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT-SLRHLDLSSN 297
L L++S NQF + L +L +L L++N F G IPD + +L LDLS N
Sbjct: 248 ELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS 357
HF +P + S LE L+LSSN G + L + ++ LDLSFNE ++P S +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 358 RFCNLRSISLSGIQLSHQKVS-QVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVL 416
S SL + LS S +L + L+ L L N +G + + L
Sbjct: 365 NL----SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSE--IHFANLSSLTFFYASRNS 474
S+ LS N +SG +P SLG LS LR L + N L G + + ++ L +L + N
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF---ND 477
Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
LT + L + L + L P W+ +L L +S++ IP
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL-- 592
+ +L L+ N +G IP Q G ++AN ++G+ + N D K +
Sbjct: 538 RSLI-WLDLNTNLFNGTIP-AAMFKQSGK--IAANFIAGKRYVYIKN----DGMKKECHG 589
Query: 593 SGSILHF---------------VCH--------------ETNGTRLTQIINLEDNLLAGE 623
+G++L F C+ + NG+ + +++ N+L+G
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--FLDMSYNMLSGY 647
Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELE 683
IP + YL +L L +N +G +P +G G +P ++ T L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 684 TIDIGENEFSGNVPAWIG-ERFPRMIILILRSNKFHGVFPLELC 726
ID+ N SG +P E FP L +N +PL C
Sbjct: 708 EIDLSNNNLSGPIPEMGQFETFPPAKFL---NNPGLCGYPLPRC 748
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 172 bits (437), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 203/701 (28%), Positives = 305/701 (43%), Gaps = 119/701 (16%)
Query: 287 TSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQ--GRISSVLLENLSSIQSLD 342
SL LDLS N S + L S L++L++SSN L G++S L L+S++ LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVLD 154
Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL 402
LS N S+SG + V VL+ GC L+ L +S +
Sbjct: 155 LSAN-------------------SISGANV----VGWVLS--DGCGE--LKHLAISGNKI 187
Query: 403 SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANL 462
SG + + + L +D+S N+ S +P+ LG S+L++LDIS N+L+G S +
Sbjct: 188 SGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 243
Query: 463 SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDS 521
+ L S N P +P+ L+ L L P +L + L LD+S +
Sbjct: 244 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 522 GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP--NLTEVSQLGTLDLSANNLSGQLPL-- 577
+P F+ S + L+LS+N GE+P L ++ L LDLS N SG+LP
Sbjct: 302 HFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 578 --LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLL 635
L+++++ LDLS N SG IL +C T Q + L++N G+IP N L+
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELV 418
Query: 636 VLRLDNNKFTGKLPTSLGA------------------------XXXXXXXXXXXXXXXGT 671
L L N +G +P+SLG+ G
Sbjct: 419 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Query: 672 LPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731
+P L NCT L I + N +G +P WIG R + IL L +N F G P EL L
Sbjct: 479 IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSL 537
Query: 732 KILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791
L L N +GTIP A F S I ++F ++ I +++E
Sbjct: 538 IWLDLNTNLFNGTIPA--------AMFKQSGKIA-----ANFIAGKRYVYIKNDGMKKEC 584
Query: 792 ITLEGKTLTFKAVL-----RLLTN--IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844
G L F+ + RL T ++++ + G + L++S+N SG
Sbjct: 585 HG-AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 845 RIPENIGAMAL------------------------LESLDFSSNRLEGEIPKNTVNLVFL 880
IP+ IG+M L LD SSN+L+G IP+ L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 881 SHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKK 921
+ ++S NNLSG +P+ QF TF + ++ + LCG L +
Sbjct: 704 TEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 150/510 (29%), Positives = 232/510 (45%), Gaps = 121/510 (23%)
Query: 397 LSNTTLSGSLTNQIGKFKV---LNSVDLSENSISGQVPW--SLGKLSSLRYLDISNNQLN 451
LSN+ ++GS++ FK L S+DLS NS+SG V SLG S L++L++S+N L+
Sbjct: 81 LSNSHINGSVSG----FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 136
Query: 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN 511
+ + S LK N LE LDL + + S
Sbjct: 137 -----------------FPGKVSGGLKLN-------SLEVLDLSANSI---------SGA 163
Query: 512 HLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
++V +SD + +L++S N+I G++ +++ L LD+S+NN
Sbjct: 164 NVVGWVLSDG-------------CGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNNF 209
Query: 572 SGQLPLLA--SNVMVLDLSKNKLSGSILHFV--CHETNGTRLTQIINLEDNLLAGEIPDC 627
S +P L S + LD+S NKLSG + C E +++N+ N G IP
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTEL------KLLNISSNQFVGPIPP- 262
Query: 628 WMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELETIDI 687
+ + L L L NKFTG++P L G C L +D+
Sbjct: 263 -LPLKSLQYLSLAENKFTGEIPDFLS-----------------------GACDTLTGLDL 298
Query: 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIP 746
N F G VP + G + L L SN F G P++ L + LK+L L+ N SG +P
Sbjct: 299 SGNHFYGAVPPFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 357
Query: 747 TCISNFTAMATFLGSDSIYTIQYPSD-FSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805
++N +A S+ T+ S+ FS P I + TL+
Sbjct: 358 ESLTNLSA--------SLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQ---------- 394
Query: 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
+ L NN F+G+IP ++ EL SL+LS N+ SG IP ++G+++ L L N
Sbjct: 395 ----ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 866 LEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
LEGEIP+ + + L + +N+L+GE+P
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 198/764 (25%), Positives = 312/764 (40%), Gaps = 100/764 (13%)
Query: 35 EREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQA 94
E L+SFK L D N L W + + C + GV C + ++L P + G A
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLS-SKPL--NVGFSA 65
Query: 95 KESSALV-----------GKINPALLDFE---HLIYLNLSYNDFKG-IQIPRFLGSMGNL 139
SS L IN ++ F+ L L+LS N G + LGS L
Sbjct: 66 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 125
Query: 140 RFLDLSGA--GFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV------EDLGWXXXXXXXX 191
+FL++S F G + + L++L+ L+L N + G V + G
Sbjct: 126 KFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 192 XXXXXGVDLSKVSN-------------GPLVTNALRSLLVLQLAGCQLSHFPPLSVANFS 238
VD+S+ N G +L L ++G +LS +++ +
Sbjct: 185 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT 244
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWT-SLRHLDLSSN 297
L L++S NQF + L +L +L L++N F G IPD + +L LDLS N
Sbjct: 245 ELKLLNISSNQFVGPIPPLPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS 357
HF +P + S LE L+LSSN G + L + ++ LDLSFNE ++P S +
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 358 RFCNLRSISLSGIQLSHQKVS-QVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVL 416
S SL + LS S +L + L+ L L N +G + + L
Sbjct: 362 NL----SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 417
Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSE--IHFANLSSLTFFYASRNS 474
S+ LS N +SG +P SLG LS LR L + N L G + + ++ L +L + N
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF---ND 474
Query: 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKS 534
LT + L + L + L P W+ +L L +S++ IP
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL-- 592
+ +L L+ N +G IP Q G ++AN ++G+ + N D K +
Sbjct: 535 RSLI-WLDLNTNLFNGTIP-AAMFKQSGK--IAANFIAGKRYVYIKN----DGMKKECHG 586
Query: 593 SGSILHF---------------VCH--------------ETNGTRLTQIINLEDNLLAGE 623
+G++L F C+ + NG+ + +++ N+L+G
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM--FLDMSYNMLSGY 644
Query: 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAXXXXXXXXXXXXXXXGTLPVSLGNCTELE 683
IP + YL +L L +N +G +P +G G +P ++ T L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 684 TIDIGENEFSGNVPAWIG-ERFPRMIILILRSNKFHGVFPLELC 726
ID+ N SG +P E FP L +N +PL C
Sbjct: 705 EIDLSNNNLSGPIPEMGQFETFPPAKFL---NNPGLCGYPLPRC 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 32/255 (12%)
Query: 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729
G +P ++ T+L + I SG +P ++ + ++ L N G P + L
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789
L + GN +SG IP +F+ + T S+ + P F N+ FV
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFT-----SMTISRNRLTGKIPPTFANLNLAFV-- 202
Query: 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN 849
DLS N G+ + + ++L+ N + + +
Sbjct: 203 ----------------------DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239
Query: 850 IGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYI 909
+G L LD +NR+ G +P+ L FL N+S+NNL GE+P FD S+Y
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299
Query: 910 GDEYLCGPVLKKLCT 924
++ LCG L CT
Sbjct: 300 NNKCLCGSPLPA-CT 313
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 137/350 (39%), Gaps = 80/350 (22%)
Query: 31 CVESEREALLSFKQDLEDPSNRLATWIGDGDCCK--WAGVICDNFTG-------HVLELH 81
C +++ALL K+DL +P+ L++W+ DCC W GV+CD T + L+
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 LGNPWEDDHGHQAKES---------SALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRF 132
L P+ + LVG I PA+ L YL +++ + G IP F
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF 120
Query: 133 LGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXX 192
L + L LD S G +P I +L NL + N + G + G
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---------- 170
Query: 193 XXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT-LDLSHNQFD 251
+FS L T + +S N+
Sbjct: 171 -------------------------------------------SFSKLFTSMTISRNRLT 187
Query: 252 NSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311
+ T + NL F+DLS N +G + + + + L+ N ++ + + +
Sbjct: 188 GKIPPT--FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRF 359
L L L +NR+ G + L + L + SL++SFN L +IP+ + RF
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG------- 325
NN GPIP I T L +L ++ + S IP++L++ L L S N L G
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 326 -------------RISSVLLENLSSIQ----SLDLSFNELEWKIPRSFSRFCNLRSISLS 368
RIS + ++ S S+ +S N L KIP +F+ +++L+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA------NLNLA 200
Query: 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428
+ LS + ++ G + + + L+ +L+ L ++G K LN +DL N I G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYG 258
Query: 429 QVPWSLGKLSSLRYLDISNNQLNGTVSE 456
+P L +L L L++S N L G + +
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 24/260 (9%)
Query: 338 IQSLDLSFNELE--WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESL 395
+ +LDLS L + IP S + L + + GI + +A + L L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-----QLHYL 106
Query: 396 DLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
+++T +SG++ + + + K L ++D S N++SG +P S+ L +L + N+++G +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL-RSCYLGPP---FPSWLHSQN 511
+ + + T SRN LT K P + L +DL R+ G F S ++Q
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225
Query: 512 -HLVNLDIS-DSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSA 568
HL ++ D G V N N L L NN+I+G +P LT++ L +L++S
Sbjct: 226 IHLAKNSLAFDLGKVGLSKN--------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 569 NNLSGQLPLLASNVMVLDLS 588
NNL G++P N+ D+S
Sbjct: 278 NNLCGEIP-QGGNLQRFDVS 296
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 103/244 (42%), Gaps = 36/244 (14%)
Query: 207 PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266
P L L L + +S P ++ +LVTLD S+N +L + L NLV
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLV 152
Query: 267 FLDLSDNNFQGPIPDTIQNWTSL-RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+ N G IPD+ +++ L + +S N + IP + L ++ LS N L+G
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385
+SVL + + Q + L+ N L + L + LS
Sbjct: 212 D-ASVLFGSDKNTQKIHLAKNSLAF---------------DLGKVGLSKN---------- 245
Query: 386 GCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDI 445
L LDL N + G+L + + K L+S+++S N++ G++P G L
Sbjct: 246 ------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 446 SNNQ 449
+NN+
Sbjct: 299 ANNK 302
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 104/287 (36%), Gaps = 76/287 (26%)
Query: 486 VFQLEELDLRSCYLGPPFP--SWLHSQNHLVNLDISD-SGIVDTIPNRFWKSITQFNYLS 542
+++ LDL L P+P S L + +L L I + +V IP K +TQ +YL
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLY 107
Query: 543 LSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCH 602
+++ + G IP+ +SQ+ TL + LD S N LSG++
Sbjct: 108 ITHTNVSGAIPDF--LSQIKTL------------------VTLDFSYNALSGTL------ 141
Query: 603 ETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA-XXXXXXX 661
P + L+ + D N+ +G +P S G+
Sbjct: 142 ----------------------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 662 XXXXXXXXGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII------------ 709
G +P + N L +D+ N G+ G I
Sbjct: 180 TISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238
Query: 710 ----------LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746
L LR+N+ +G P L L FL L ++ NNL G IP
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 132/312 (42%), Gaps = 28/312 (8%)
Query: 212 ALRSLLVLQLAGCQLSHFPPL---SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268
++ L +L+ ++HF L S ANF SL L + N L L L NL L
Sbjct: 293 GMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTL 352
Query: 269 DLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR 326
DLS N+ + ++Q N + L+ L+LS N L + + +LE L L+ RL
Sbjct: 353 DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHIN 412
Query: 327 ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV------ 380
+NL +Q L+L++ L+ + LR ++L G +++
Sbjct: 413 APQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTV 472
Query: 381 ----LAIFSGC-----VSDVLESL------DLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
+ I S C SL DLS+ +L+ + + K + ++L+ NS
Sbjct: 473 GSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANS 531
Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
I+ P L LS +++S+N L+ T S IHF + T ANP +
Sbjct: 532 INIISPRLLPILSQQSTINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLR 591
Query: 486 VFQLEELDLRSC 497
+L ++ L SC
Sbjct: 592 GVKLSDVKL-SC 602
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 808 LTNIDLSNNKFSGE--IPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865
L +DLS+N ++ L L++LNLSHN G + LE LD + R
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 866 LEGEIPKNTV-NLVFLSHFNISY 887
L P++ NL FL N++Y
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTY 431
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 152/377 (40%), Gaps = 92/377 (24%)
Query: 262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSN 321
L NL FLDL+ DT Q+ L L L+ N ++ LN L++L L
Sbjct: 53 LMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFL--- 109
Query: 322 RLQGRISS---VLLENLSSIQSLDLSFNEL-EWKIPRSFSR-------FCN--LRSISLS 368
+Q IS+ + + NL +++SL L N + K P+ F F N + IS
Sbjct: 110 -IQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIHYISRE 168
Query: 369 GIQLSHQKV--------SQVLAIFSGCV-SDVLESLDLSNTT--------LSGSLTNQ-- 409
++ Q + + V I G S + +SL+ T L S T
Sbjct: 169 DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLW 228
Query: 410 IGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
+G F+ ++ D+S + G S+ L+ + E F+++SS TF
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESLN---------------LQEHRFSDISSTTFQC 273
Query: 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN 529
+ QL+ELDL + +L PS + N L L +S N
Sbjct: 274 FT----------------QLQELDLTATHL-KGLPSGMKGLNLLKKLVLS--------VN 308
Query: 530 RFWK--SITQFNYLSLSNNQIHGEIPN-------LTEVSQLGTLDLSANNLSG------Q 574
F + I+ N+ SL++ I G + L ++ L TLDLS N++ Q
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQ 368
Query: 575 LPLLASNVMVLDLSKNK 591
L L S++ L+LS N+
Sbjct: 369 LKNL-SHLQTLNLSHNE 384
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 157/390 (40%), Gaps = 57/390 (14%)
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298
++ +LDLS+N+ + + L NL L L+ N D+ + SL HLDLS N+
Sbjct: 27 AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS-FS 357
S L W S L +L+L N + + L +L+ +Q L + + KI R F+
Sbjct: 86 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 145
Query: 358 RFCNLRSISLSGIQL---------SHQKVSQ----------VLAIFSGCVSDVLESLDLS 398
L + + L S Q VS +L IF S V E L+L
Sbjct: 146 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-ECLELR 204
Query: 399 NTTL---------SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
+T L +G + I KF N V +++ S+ QV L ++S L L+ +
Sbjct: 205 DTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESL-FQVMKLLNQISGLLELEFDDCT 262
Query: 450 LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHS 509
LNG + F AS N + +P V + L + YL S L+S
Sbjct: 263 LNGVGN------------FRASDNDRVI--DPGKVETLTIRRLHIPRFYLFYDL-STLYS 307
Query: 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQ----LGTLD 565
V ++ V +P + + YL LS N + E + L TL
Sbjct: 308 LTERVKRITVENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLI 367
Query: 566 LSANNL-----SGQLPLLASNVMVLDLSKN 590
L N+L +G+ L N+ +D+SKN
Sbjct: 368 LRQNHLASLEKTGETLLTLKNLTNIDISKN 397
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR 441
+I SG +++ ++SLDLSN ++ + + + L ++ L+ N I+ S L SL
Sbjct: 19 SIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 442 YLDISNNQLNGTVSEIHFANLSSLTFF 468
+LD+S N L+ +S F LSSLTF
Sbjct: 78 HLDLSYNYLSN-LSSSWFKPLSSLTFL 103
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
N +L+L +N+ Q DT ++ L L LS N + N L L L NRL
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
+ + E LS ++ L L N +E +F+R +LR + L ++ + +S+ A
Sbjct: 96 TT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK-RLEYISE--AA 151
Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
F G V+ +L + N +LT + L ++LS N + P S L+SLR L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVR----LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
+ + Q+ T+ F +L SL S N+L + + P+ +LE + L
Sbjct: 208 WLMHAQV-ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLK 478
++L ENSI + L L L +S N L + F L SL N LT
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 479 ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDSGIVDTIPNRFWKSITQ 537
+ + +L EL LR+ + PS+ ++ L LD+ + ++ I ++ +
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
YL+L + +IPNLT + +L L+LS N L
Sbjct: 158 LRYLNLGMCNL-KDIPNLTALVRLEELELSGNRL 190
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 105/231 (45%), Gaps = 9/231 (3%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
N +L+L +N+ Q DT ++ L L LS N + N L L L NRL
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
+ + E LS ++ L L N +E +F+R +LR + L ++ + +S+ A
Sbjct: 96 TT-VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK-RLEYISE--AA 151
Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
F G V+ +L + N +LT + L ++LS N + P S L+SLR L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVR----LEELELSGNRLDLIRPGSFQGLTSLRKL 207
Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
+ + Q+ T+ F +L SL S N+L + + P+ +LE + L
Sbjct: 208 WLMHAQV-ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLK 478
++L ENSI + L L L +S N L + F L SL N LT
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 479 ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDSGIVDTIPNRFWKSITQ 537
+ + +L EL LR+ + PS+ ++ L LD+ + ++ I ++ +
Sbjct: 99 PTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNL 571
YL+L + +IPNLT + +L L+LS N L
Sbjct: 158 LRYLNLGMCNLK-DIPNLTALVRLEELELSGNRL 190
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
+++ +LDLS N+ + L NL L L + D + SL HLDLS N
Sbjct: 26 AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR-SF 356
H S L W S L+YL+L N Q + L NL+++Q+L + E +I R F
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAI 383
+ +L + + + L + + + +I
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSI 171
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 284 QNWTSLRHLDLSSNHFSYLIPEWLN------KFSRLEYLSLSSNRLQG-RISSVLLENLS 336
Q+ SL LDLS N ++ E+L + L+ L LS N L+ + + +L L
Sbjct: 331 QHLKSLEFLDLSEN---LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387
Query: 337 SIQSLDLSFNELEWKIPRSFS-----RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
++ SLD+S N +P S RF NL S +GI+ + C+
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS---TGIR-----------VVKTCIPQT 432
Query: 392 LESLDLSNTTL 402
LE LD+SN L
Sbjct: 433 LEVLDVSNNNL 443
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 259 LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSL 318
L L NL +L L+ N Q T+L+ L L N L +K + L YL+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 319 SSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
+ N+LQ V + L+++ LDLS+N+L+ F + L+ + L QL
Sbjct: 141 AHNQLQSLPKGV-FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
L +L L L G QL P ++L L L NQ SL L NL +L+L+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAH 142
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
N Q T+L LDLS N L +K ++L+ L L N+L+ + +
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVF 201
Query: 333 ENLSSIQSLDLSFNELEWKIP--RSFSRFCNLRS 364
+ L+S+Q + L N + P R S + N S
Sbjct: 202 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 123 DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182
D K +Q ++L N+R+L L G + + + L+NL YL L N L L G
Sbjct: 52 DIKSVQGIQYLP---NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL---PNG 103
Query: 183 WXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
L + +G V + L +L L LA QL P ++L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLDLSSNHFSY 301
LDLS+NQ SL L L L L N + +PD + TSL+++ L N +
Sbjct: 162 LDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 219
Query: 302 LIP------EWLNKFS 311
P EW+NK S
Sbjct: 220 TCPGIRYLSEWINKHS 235
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
+ YL+L N+L IS+ L+ L+++ L L+ N+L+ F + NL+ + L QL
Sbjct: 65 VRYLALGGNKLHD-ISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
S +F + L L+L++ L K L +DLS N +
Sbjct: 122 Q----SLPDGVFDKLTN--LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRN 473
KL+ L+ L + NQL +V + F L+SL + + N
Sbjct: 176 VFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 225 QLSHFPPLSVANFSSLVTL---DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
Q + LS A F L L +L +NQ +L A L L L L++N
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
+ T L L L N L ++ ++L+ L L++N+LQ I + + L+++Q+L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTL 160
Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
LS N+L+ +F R L++I+L G Q
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
GL L +L+L N Q + T L L L++N + L + ++L+ L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
N+L+ S V + L+ ++ L L+ N+L+ +F + NL+++SLS QL
Sbjct: 117 NQLKSLPSGVF-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS 295
+ + L TL L++NQ SL L L L L N + T L+ L L+
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 296 SNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
+N + +K + L+ LSLS+N+LQ + + L +Q++ L N+ +
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFD 192
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297
+++ +LDLS N+ + L NL L L + D + SL HLDLS N
Sbjct: 52 AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 298 HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR-SF 356
H S L W S L+YL+L N Q + L NL+++Q+L + E +I R F
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 170
Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAI 383
+ +L + + + L + + + +I
Sbjct: 171 AGLTSLNELEIKALSLRNYQSQSLKSI 197
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 30/131 (22%)
Query: 284 QNWTSLRHLDLSSNHFSYLIPEWLN------KFSRLEYLSLSSNRLQG-RISSVLLENLS 336
Q+ SL LDLS N ++ E+L + L+ L LS N L+ + + +L L
Sbjct: 357 QHLKSLEFLDLSEN---LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 413
Query: 337 SIQSLDLSFNELEWKIPRSFS-----RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
++ SLD+S N +P S RF NL S +GI+ + C+
Sbjct: 414 NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS---TGIR-----------VVKTCIPQT 458
Query: 392 LESLDLSNTTL 402
LE LD+SN L
Sbjct: 459 LEVLDVSNNNL 469
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 5/150 (3%)
Query: 225 QLSHFPPLSVANFSSLVTL---DLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD 281
Q + LS A F L L +L +NQ +L A L L L L++N
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLASLPLG 101
Query: 282 TIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
+ T L L L N L ++ ++L+ L L++N+LQ I + + L+++Q+L
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTL 160
Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
LS N+L+ +F R L++I+L G Q
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
GL L +L+L N Q + T L L L++N + L + ++L+ L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
N+L+ S V + L+ ++ L L+ N+L+ +F + NL+++SLS QL
Sbjct: 117 NQLKSLPSGVF-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS 295
+ + L TL L++NQ SL L L L L N + T L+ L L+
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 296 SNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
+N + +K + L+ LSLS+N+LQ + + L +Q++ L N+ +
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFD 192
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 112/264 (42%), Gaps = 34/264 (12%)
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298
++ +LDLS+N+ + + L NL L L+ N D+ + SL HLDLS N+
Sbjct: 53 AVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS-FS 357
S L W S L +L+L N + + L +L+ +Q L + + KI R F+
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Query: 358 RFCNLRSISLSGIQL---------SHQKVSQ----------VLAIFSGCVSDVLESLDLS 398
L + + L S Q VS +L IF S V E L+L
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV-ECLELR 230
Query: 399 NTTL---------SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ 449
+T L +G + I KF N V +++ S+ QV L ++S L L+ S NQ
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRN-VKITDESL-FQVMKLLNQISGLLELEFSRNQ 288
Query: 450 LNGTVSEIHFANLSSLTFFYASRN 473
L I F L+SL + N
Sbjct: 289 LKSVPDGI-FDRLTSLQKIWLHTN 311
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 382 AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR 441
+I SG +++ ++SLDLSN ++ + + + L ++ L+ N I+ S L SL
Sbjct: 45 SIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 442 YLDISNNQLNGTVSEIHFANLSSLTFF 468
+LD+S N L+ +S F LSSLTF
Sbjct: 104 HLDLSYNYLSN-LSSSWFKPLSSLTFL 129
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 127/291 (43%), Gaps = 58/291 (19%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
L +L L L G Q++ PLS N L L + N+ + + L L NL L L++
Sbjct: 65 LTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNE 119
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNH-FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL 331
+N P + N T L+L +NH S L P L+ + L YL+++ ++++
Sbjct: 120 DNISDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTP--- 172
Query: 332 LENLSSIQSLDLSFNELEWKIPRS-------FSRFCN--------LRSISLSGIQLSHQK 376
+ NL+ + SL L++N++E P + F+ + N L+ +++ + K
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNK 232
Query: 377 VSQV-----------LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
++ + L I + +SD+ DL+ +NQI VLN+
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNN------- 285
Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
LS L L ++NNQL E+ L++LT + S+N +T
Sbjct: 286 -----------LSQLNSLFLNNNQLGNEDXEV-IGGLTNLTTLFLSQNHIT 324
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
++D++ + + Q+ +++ LDLS N S + L F++LE L+LSSN L +
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YET 73
Query: 330 VLLENLSSIQSLDLSFNELE-----------WKIPRSFSRFCNLRSISLSGIQLSHQKVS 378
+ LE+LS++++LDL+ N ++ + SR R I L++ K++
Sbjct: 74 LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133
Query: 379 QVLAIFSGCVSDVLESLDLS-NTTLSGSLTNQIGKFKVLNSVDLSEN---SISGQVPWSL 434
+ + GC S V + LDL N + + L ++L N + GQV +
Sbjct: 134 MLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-- 190
Query: 435 GKLSSLRYLDISNNQL 450
+ L+ LD+S+N+L
Sbjct: 191 ---AKLKTLDLSSNKL 203
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 26/313 (8%)
Query: 207 PLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266
P + SL L L ++ A+F SL L + N L L L NL
Sbjct: 293 PSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQ 352
Query: 267 FLDLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
LDLS ++ + +Q N L++L+LS N L + + +LE L ++ L
Sbjct: 353 KLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLH 412
Query: 325 GRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV---- 380
+ +NL ++ L+LS L+ + +LR ++L G +S+
Sbjct: 413 VKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQ 472
Query: 381 ------LAIFSGC------------VSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
+ I S C + +V LDLS+ +L+G + + K L ++++
Sbjct: 473 MVGSLEILILSSCNLLSIDQQAFHGLRNV-NHLDLSHNSLTGDSMDALSHLKGL-YLNMA 530
Query: 423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPN 482
N+I P L LS +++S+N L+ T S IHF + T ANP
Sbjct: 531 SNNIRIIPPHLLPALSQQSIINLSHNPLDCTCSNIHFITWYKENLHKLEDSEETTCANPP 590
Query: 483 WVPVFQLEELDLR 495
+ +L ++ L
Sbjct: 591 SLRGVKLSDVKLH 603
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 107/270 (39%), Gaps = 38/270 (14%)
Query: 131 RFLGSMGNLRFLDLSGAGFVG--MIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXX 188
R L + NL+ LDLS + Q+ NL +LQYLNL N GL ED +
Sbjct: 343 RCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGL--EDQAFKECPQ 400
Query: 189 XXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN 248
K + P L L VL L+ C L +A L L+L N
Sbjct: 401 LELLDVAFTHLHVKAPHSPF--QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 249 QF-DNSLIATQL-------------------------YGLCNLVFLDLSDNNFQGPIPDT 282
F D S+ T L +GL N+ LDLS N+ G D
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
+ + L +L+++SN+ + P L S+ ++LS N L S N+ I
Sbjct: 519 LSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTCS-----NIHFITWYK 572
Query: 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
+ ++LE + + +LR + LS ++L
Sbjct: 573 ENLHKLEDSEETTCANPPSLRGVKLSDVKL 602
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 121/324 (37%), Gaps = 65/324 (20%)
Query: 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347
S+ ++L + FS L F+R++ L L++ L G S + E ++S++ L L+ N
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGI--EGMNSLKKLVLNANS 311
Query: 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT 407
+ + + F +LR + + G + LDL L
Sbjct: 312 FDQLCQINAASFPSLRDLYIKG---------------------NMRKLDLGTRCLE---- 346
Query: 408 NQIGKFKVLNSVDLSENSISGQ--VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL 465
K + L +DLS + I L L L+YL++S N+ G +
Sbjct: 347 ----KLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQ--------- 393
Query: 466 TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD 525
K P QLE LD+ +L P HL+ + ++D
Sbjct: 394 ----------AFKECP------QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLD 437
Query: 526 TIPNRFWKSITQFNYLSLSNNQIH-GEIPNLTEVSQLGTLD---LSANNL---SGQLPLL 578
T + +L+L N G I + +G+L+ LS+ NL Q
Sbjct: 438 TSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG 497
Query: 579 ASNVMVLDLSKNKLSGSILHFVCH 602
NV LDLS N L+G + + H
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSH 521
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
N L+L +N Q ++ ++ L L LS NH + N + L L L NRL
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ-LSHQKVSQVLA 382
I + LS ++ L L N +E +F+R +LR + L ++ LS+ +S+
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISE--G 179
Query: 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
F G + +L + N +LT I L+ +DLS N +S P S L L+
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIK----LDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
L + +Q+ + F NL SL + N+LTL + + P+ LE + L
Sbjct: 236 LWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 4/159 (2%)
Query: 419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLK 478
++L EN I S L L L +S N + T+ F L++L N LT
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTI 127
Query: 479 ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDSGIVDTIPNRFWKSITQ 537
N +V + +L+EL LR+ + PS+ ++ L LD+ + + I ++ ++
Sbjct: 128 PNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP 576
YL+L+ + EIPNLT + +L LDLS N+LS P
Sbjct: 187 LRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRP 224
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Query: 359 FCNLRSISLSGIQLSHQKVSQV-LAIFSGCVS-DVLESLDLSNTTLSGSLTNQIGKFKVL 416
F +LR + + +QLS + + + F+G + + LE D TT+ + K K L
Sbjct: 84 FKHLRHLEI--LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 417 NSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
L N I ++ ++ SLR LD+ + +SE F LS+L + +
Sbjct: 142 ---WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM--CN 196
Query: 477 LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI 523
L+ PN P+ +L+ELDL +L P HL L + S I
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
L L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 57 LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
++ L+ L L N L P L +LE LSL++N+L + + LL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
L ++ +L L N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
+S N+L+ L + G Q + L+ N L P L L L NN+ T
Sbjct: 107 VSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT- 161
Query: 647 KLPTSL 652
+LP L
Sbjct: 162 ELPAGL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 60 LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
++ L+ L L N L P L +LE LSL++N+L + + LL L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
+ +L L N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
+S N+L+ L + G Q + L+ N L P L L L NN+ T
Sbjct: 107 VSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT- 161
Query: 647 KLPTSL 652
+LP L
Sbjct: 162 ELPAGL 167
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
L L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 57 LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
++ L+ L L N L P L +LE LSL++N+L + + LL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
L ++ +L L N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
+S N+L+ L + G Q + L+ N L P L L L NN+ T
Sbjct: 107 VSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT- 161
Query: 647 KLPTSL 652
+LP L
Sbjct: 162 ELPAGL 167
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 225 QLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGP-IPDT 282
Q+S F LS+ N L+ LD+SH + GL +L L ++ N+FQ +PD
Sbjct: 410 QMSEFSVFLSLRN---LIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 283 IQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342
+L LDLS L P N S L+ L+++SN+L+ + + + L+S+Q +
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIW 524
Query: 343 LSFNELEWKIPR 354
L N + PR
Sbjct: 525 LHTNPWDCSCPR 536
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY- 301
LD H+ + L NL++LD+S + + +SL L ++ N F
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCN 361
+P+ + L +L LS +L+ ++S +LSS+Q L+++ N+L+ F R +
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 362 LRSI 365
L+ I
Sbjct: 520 LQKI 523
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 109 LDFEHLIYLNLSYN--DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
+D L +L+LS N FKG G+ L++LDLS G + M N +G L L++L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHL 401
Query: 167 NLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
+ + + L +S+ S V +LR+L+ L ++
Sbjct: 402 DFQHSNLK------------------------QMSEFS----VFLSLRNLIYLDISHTHT 433
Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
SSL L ++ N F + + L NL FLDLS + P +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSN 321
+SL+ L+++SN + ++ + L+ + L +N
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 9/165 (5%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANF--SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
L SL L L+ LS S ++F +SL LDLS N +++ GL L LD
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDF 403
Query: 271 SDNNFQGPIPDTIQNWTSLR---HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
+N + ++ + SLR +LD+S H N S LE L ++ N Q
Sbjct: 404 QHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
+ L ++ LDLS +LE P +F+ +L+ ++++ QL
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQ 324
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 89 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 436 KLSSLRYLDISNNQL 450
L++L +LD+S+N++
Sbjct: 147 NLTNLEHLDLSSNKI 161
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 180/419 (42%), Gaps = 51/419 (12%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271
+L+ L+ ++ L +FP + + +L L+++HN + + L NL LDLS
Sbjct: 101 SLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 272 DNNFQGPIPDTI----QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
N Q + Q LDLS N +++ P + RL L+L +N +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216
Query: 328 SSVLLENLSSIQSLDLSFNE------LEWKIPRSFSRFCNLRSISLSGIQLSH--QKVSQ 379
++ L+ ++ L E LE + CNL ++ +L++ +
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL---TIEEFRLAYLDYYLDD 273
Query: 380 VLAIFSGCVSDVLESLDLSNTTLSG-------------SLTN-QIGKFKVLNSVDLSE-- 423
++ +F+ C+++V S L + T+ L N + G+F L L
Sbjct: 274 IIDLFN-CLTNV-SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 424 -NSISGQVPWSLGKLSSLRYLDISNNQLN--GTVSEIHFANLSSLTFFYASRNSLTLKAN 480
S G +S L SL +LD+S N L+ G S+ F +SL + S N + + +
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMS 389
Query: 481 PNWVPVFQLEELDLRSCYLGP--PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
N++ + QLE LD + L F +L +N L+ LDIS + N + ++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAF-NGIFNGLSSL 447
Query: 539 NYLSLSNNQIHGE-IPNL-TEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKL 592
L ++ N +P++ TE+ L LDLS L P S++ VL+++ N+L
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 826 ITVLRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLE 867
I L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 188/506 (37%), Gaps = 83/506 (16%)
Query: 101 VGKINPALLDFEHLI-YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
+ K+ P L L+ LNL +N+ I F+ NL LDL + N N
Sbjct: 61 ISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCT-NLTELDLMSNSIHKIKSNPFKN 119
Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVL 219
NL L+L N GL LG + + + L SL L
Sbjct: 120 QKNLIKLDLSHN---GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKL 176
Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFD-----------------------NSLIA 256
L+ L F P L L L++ Q + N L+A
Sbjct: 177 DLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLA 236
Query: 257 TQ---LYGL--CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311
T GL NL LDLS NN + SLR+L L N+ L P S
Sbjct: 237 TSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLS 296
Query: 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
L YLSL + +S N+ D SF L++ L +++
Sbjct: 297 NLRYLSLKRAFTKQSVSLASHPNID-----DFSFQWLKY-----------LEYLNMDDNN 340
Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS-GSLTNQIG---KFKVLNSVDLSENSIS 427
+ K + F+G VS L+ L LS T S +LTN+ L +++L++N IS
Sbjct: 341 IPSTKSN----TFTGLVS--LKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF 487
+ L LR LD+ N++ +S + L ++ Y S N + ++ V
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVP 454
Query: 488 QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQ 547
L+ L LR L N+DIS S P R +++T L LSNN
Sbjct: 455 SLQRLMLRRVALK--------------NVDISPS------PFRPLRNLT---ILDLSNNN 491
Query: 548 IHGEIPNLTE-VSQLGTLDLSANNLS 572
I +L E + L LD NNL+
Sbjct: 492 IANINEDLLEGLENLEILDFQHNNLA 517
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 33/242 (13%)
Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNL-------RSIS------------LSGIQLSHQK 376
S+I L+L+ N+L P +F+R+ L SIS L + L H +
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 377 VSQVL-AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSL 434
+SQ+ F C + L LDL + ++ +N K L +DLS N +S ++ +
Sbjct: 85 LSQISDQTFVFCTN--LTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGV 142
Query: 435 GKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDL 494
+ L N L E+ F SSL S N L + + + +L L L
Sbjct: 143 QLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLL 202
Query: 495 RSCYLGPPFPS---WLHSQNHLVNLDISDSGIVDTIPNRF----WKSITQFNYLSLSNNQ 547
+ L P W S + NL ++++ ++ T + F W ++TQ L LS N
Sbjct: 203 NNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQ---LDLSYNN 259
Query: 548 IH 549
+H
Sbjct: 260 LH 261
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 60 LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
++ L+ L L N L P L +LE LSL++N+L + + LL L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
+ +L L N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG 646
+S N+L+ L + G Q + L+ N L P L L L NN+ T
Sbjct: 107 VSFNRLTSLPLGAL----RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT- 161
Query: 647 KLPTSL 652
+LP L
Sbjct: 162 ELPAGL 167
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 113 HLIYLNLSYN--DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRP 170
L L+LS N FKG G+ L++LDLS G + M N +G L L++L+ +
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQH 110
Query: 171 NYLGG-------LYVEDLGWXXXXXXXXXXXXXGV-------DLSKVSNG-------PLV 209
+ L L + +L + G+ ++ K++ P +
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 210 TNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLD 269
LR+L L L+ CQL P + + SSL L++SHN F SL L +L LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLD 229
Query: 270 LSDNNFQGPIPDTIQNW-TSLRHLDLSSNHFS 300
S N+ +Q++ +SL L+L+ N F+
Sbjct: 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 35/258 (13%)
Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL--QGRISSVLLENLSSIQSLDLS 344
+S L+L SN L +K ++L LSLSSN L +G S +S++ LDLS
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLS 86
Query: 345 FN-------------ELE--------WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
FN +LE K FS F +LR++ I +H +V+ I
Sbjct: 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGI 145
Query: 384 FSGCVSDVLESLDLS-NTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRY 442
F+G S LE L ++ N+ L + + + L +DLS+ + P + LSSL+
Sbjct: 146 FNGLSS--LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203
Query: 443 LDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT------LKANPNWVPVFQLEELDLRS 496
L++S+N ++ + L+SL S N + L+ P+ + L + D
Sbjct: 204 LNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Query: 497 CYLGPPFPSWLHSQNHLV 514
F W+ Q L+
Sbjct: 263 TCEHQSFLQWIKDQRQLL 280
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 209 VTNALRSLLVLQLAGCQLSHFPPLSVANF--SSLVTLDLSHNQFDNSLIATQLYGLCNLV 266
V + L L L L+ LS S ++F +SL LDLS N +++ GL L
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLE 104
Query: 267 FLDLSDNNFQGPIPDTIQNWTSLR---HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
LD +N + ++ + SLR +LD+S H N S LE L ++ N
Sbjct: 105 HLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLS 368
Q + L ++ LDLS +LE P +F+ +L+ +++S
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 61 LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 115
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
++ L+ L L N L P L +LE LSL++N L + + LL L +
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 174
Query: 338 IQSLDLSFNELEWKIPRSF 356
+ +L L N L + IP+ F
Sbjct: 175 LDTLLLQENSL-YTIPKGF 192
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 55 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 107
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 108 VSFNRLT 114
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
L TLDLSHNQ + + Q L L LD+S N ++ L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
L P L +LE LSL++N L + + LL L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 107 VSFNRLT 113
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 65/142 (45%), Gaps = 8/142 (5%)
Query: 216 LLVLQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN 274
L L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 57 LTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNR 111
Query: 275 FQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLEN 334
++ L+ L L N L P L +LE LSL++N L + + LL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNG 170
Query: 335 LSSIQSLDLSFNELEWKIPRSF 356
L ++ +L L N L + IP+ F
Sbjct: 171 LENLDTLLLQENSL-YTIPKGF 191
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 107 VSFNRLT 113
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
L TLDLSHNQ + + Q L L LD+S N ++ L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
L P L +LE LSL++N L + + LL L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 107 VSFNRLT 113
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 219 LQLAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQG 277
L L C+L+ L V L TLDLSHNQ + + Q L L LD+S N
Sbjct: 60 LNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTS 114
Query: 278 PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337
++ L+ L L N L P L +LE LSL++N L + + LL L +
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173
Query: 338 IQSLDLSFNELEWKIPRSF 356
+ +L L N L + IP+ F
Sbjct: 174 LDTLLLQENSL-YTIPKGF 191
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 107 VSFNRLT 113
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
L TLDLSHNQ + + Q L L LD+S N ++ L+ L L N
Sbjct: 79 LGTLDLSHNQLQSLPLLGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
L P L +LE LSL++N L + + LL L ++ +L L N L + IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL-YTIPKGF 191
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 532 WKSITQFN--YLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASN---VMVLD 586
+ +TQ N L+ Q+ G +P LGTLDLS N L LPLL + VLD
Sbjct: 54 YTRLTQLNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPLLGQTLPALTVLD 106
Query: 587 LSKNKLS 593
+S N+L+
Sbjct: 107 VSFNRLT 113
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
++D++ + + Q+ +++ LDLS N S + L F++LE L+LSSN L +
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---YET 73
Query: 330 VLLENLSSIQSLDLSFNELE-----------WKIPRSFSRFCNLRSISLSGIQLSHQKVS 378
+ LE+LS++++LDL+ N ++ + SR R I L++ K++
Sbjct: 74 LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133
Query: 379 QVLAIFSGCVSDVLESLDLS-NTTLSGSLTNQIGKFKVLNSVDLSEN---SISGQVPWSL 434
+ + GC S V + LDL N + + L ++L N + GQV +
Sbjct: 134 MLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-- 190
Query: 435 GKLSSLRYLDISNNQL 450
+ L+ LD+S+N+L
Sbjct: 191 ---AKLKTLDLSSNKL 203
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 43/288 (14%)
Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDNNFQGPIPDTIQ 284
+S P + N +L TL L N+ LI ++ GL NL LD+S+N + Q
Sbjct: 68 VSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 285 NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL--- 341
+ +L+ L++ N Y+ + + LE L+L + ++S+ E LS + L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE----KCNLTSIPTEALSHLHGLIVL 181
Query: 342 -----------DLSFNEL---------EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQV- 380
D SF L W + + C L ++L+ + ++H ++ V
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC-LYGLNLTSLSITHCNLTAVP 240
Query: 381 -LAIFSGCVSDVLESLDLSN---TTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGK 436
LA+ L L+LS +T+ GS+ +++ + L + L ++ P++
Sbjct: 241 YLAVRHLV---YLRFLNLSYNPISTIEGSMLHELLR---LQEIQLVGGQLAVVEPYAFRG 294
Query: 437 LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV 484
L+ LR L++S NQL T+ E F ++ +L N L WV
Sbjct: 295 LNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLWV 341
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 126/305 (41%), Gaps = 43/305 (14%)
Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP 431
L H+K + +A+ G ++ LDL + ++ F L ++L+EN +S P
Sbjct: 17 LCHRK--RFVAVPEGIPTET-RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 432 WSLGKLSSLRYLDISNNQL------------NGTVSEIH-----------FANLSSLTFF 468
+ L +LR L + +N+L N T +I F +L +L
Sbjct: 74 GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
Query: 469 YASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIP 528
N L ++ + + LE+L L C L L + L+ L + I + I
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIR 192
Query: 529 NRFWKSITQFNYLSLSN-NQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV--- 584
+ +K + + L +S+ + PN L +L ++ NL+ +P LA +V
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLR 251
Query: 585 -LDLSKNKLS---GSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640
L+LS N +S GS+LH + RL Q I L LA P + YL VL +
Sbjct: 252 FLNLSYNPISTIEGSMLHEL------LRL-QEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304
Query: 641 NNKFT 645
N+ T
Sbjct: 305 GNQLT 309
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 112/272 (41%), Gaps = 26/272 (9%)
Query: 111 FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLR 169
F HL L L+ N ++ P ++ NLR L L + + +IP + LSNL L++
Sbjct: 55 FPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDIS 112
Query: 170 PNYLGGLYVEDLGWXXXXXXXXXXXXXGV-DLSKVSNGPLVTNALRSLLVLQLAGCQLSH 228
N + L L + G DL +S+ + L SL L L C L+
Sbjct: 113 ENKIVIL----LDYMFQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTS 166
Query: 229 FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQ---- 284
P ++++ L+ L L H N++ L L L++S P DT+
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEIS----HWPYLDTMTPNCL 221
Query: 285 ---NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341
N TSL + YL + L +L+LS N + I +L L +Q +
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLA---VRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEI 277
Query: 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
L +L P +F LR +++SG QL+
Sbjct: 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
LDL+ + +P + ++L+ L LS+N F L + F L +LS+ N + +
Sbjct: 283 LDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL 341
Query: 328 SSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGC 387
+ LENL +++ LDLS +++E S CNL+ +LS +Q + ++ L++ +
Sbjct: 342 GTGCLENLENLRELDLSHDDIET------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 388 VSDV--LESLDLSNTTL 402
+ LE LDL+ T L
Sbjct: 396 FKECPQLELLDLAFTRL 412
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 45/256 (17%)
Query: 82 LGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRF 141
L N E D H E+S N L + HL LNLSYN+ ++ F L
Sbjct: 349 LENLRELDLSHDDIETSDCC---NLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLEL 404
Query: 142 LDLSGAGF-VGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDL 200
LDL+ V + NL L+ LNL + L D+ +
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL------DISSEQLFDGLPALQHLNLQG 458
Query: 201 SKVSNGPL-VTNALRS---LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIA 256
+ G + TN+L++ L +L L+ C LS + + + +DLSHN+ +S I
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
Query: 257 --TQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
+ L G+ +L+L+SNH S ++P L S+
Sbjct: 519 ALSHLKGI----------------------------YLNLASNHISIILPSLLPILSQQR 550
Query: 315 YLSLSSNRLQGRISSV 330
++L N L S++
Sbjct: 551 TINLRQNPLDCTCSNI 566
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLD 293
++F+ L L L+ N+ N + +GL +L+ L+LS NF G I + +N L LD
Sbjct: 296 SHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLD 353
Query: 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIP 353
LS NH L + L+ L+L +N+L+ + + + L+S+Q + L N + P
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Query: 354 R--SFSRFCNLRSISLSG 369
R SR+ N S G
Sbjct: 413 RIDYLSRWLNKNSQKEQG 430
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 116/320 (36%), Gaps = 76/320 (23%)
Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMI--PNQIGNLSNLQYLNLRPN 171
LI L L YN F ++ F G + NL L L+ G + N L++L+ L LR N
Sbjct: 81 LIILKLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 172 YLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP 231
+ + +++ + L N ++S+ L Q HF
Sbjct: 140 NIKKIQPASFF---------------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184
Query: 232 LSVANFS---------------------SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
L +++ + S+ TLDLS N F S+ + L
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 271 ------------SDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316
NF+ P T + + ++ DLS + L+ + F+ LE L
Sbjct: 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304
Query: 317 SLSSNRLQ-----------------------GRISSVLLENLSSIQSLDLSFNELEWKIP 353
+L+ N + G I S + ENL ++ LDLS+N +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 354 RSFSRFCNLRSISLSGIQLS 373
+SF NL+ ++L QL
Sbjct: 365 QSFLGLPNLKELALDTNQLK 384
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 16/214 (7%)
Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
+N VDLS NSI+ S +L L++L + + F LSSL N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPS--WLHSQNHLVNLDISDSGIVDTIPNRFWK 533
+ + LE L L C L S + L L + D+ I P F+
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 534 SITQFNYLSLSNNQI-----------HGEIPNLTEVSQLGTLDLSANNLSGQL---PLLA 579
++ +F+ L L+ N++ G+ L +S + D++ L + P
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQII 613
+++ LDLS N S+ GT++ +I
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 133/342 (38%), Gaps = 60/342 (17%)
Query: 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348
+ ++DLS N + L ++ L++L + I + LSS+ L L +N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTN 408
+F+ NL ++L+ L A+ SG L SL++
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDG-------AVLSGNFFKPLTSLEM----------- 133
Query: 409 QIGKFKVLNSVDLSENSISGQVPWSLG-KLSSLRYLDISNNQLNGTVSEIHFANLSSLTF 467
+ L +N+I P S + LD++ N++ ++ E N F
Sbjct: 134 ----------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHF 182
Query: 468 FYASRNSLTLK-ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526
+S+TL+ N W L C G PF + + LD+S +G ++
Sbjct: 183 TLLRLSSITLQDMNEYW--------LGWEKC--GNPFKN-----TSITTLDLSGNGFKES 227
Query: 527 IPNRFWKSI--TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV 584
+ RF+ +I T+ L LSN+ G S G + + L AS V
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMG--------SSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 585 LDLSKNKLSGSILHFVCHETNGTRLT----QIINLEDNLLAG 622
DLSK+K+ + H T+ +LT +I ++DN G
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 114/263 (43%), Gaps = 23/263 (8%)
Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN--NFQ 276
L + CQL FP L + SL TL ++ I+ + L +L +LDLS N +F
Sbjct: 307 LSIIRCQLKQFPTLDLPFLKSL-TLTMNKGS-----ISFKKVALPSLSYLDLSRNALSFS 360
Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
G + SLRHLDLS N + ++ L++L + L+ +L
Sbjct: 361 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLE 419
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
+ LD+S+ + F +L ++ ++G +S V A + L LD
Sbjct: 420 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN-----LTFLD 474
Query: 397 LSNTTL---SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
LS L S + + + + ++LN +S N++ +L SL LD S N++ +
Sbjct: 475 LSKCQLEQISWGVFDTLHRLQLLN---MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 531
Query: 454 VSEI-HFANLSSLTFFYASRNSL 475
+ HF SL FF + NS+
Sbjct: 532 KGILQHFP--KSLAFFNLTNNSV 552
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS--------- 373
+ ++S V + SS +++DLSFN L+ SFS F L+ + LS ++
Sbjct: 14 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 73
Query: 374 -HQKVSQVLA----------IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
H + +L FSG S LE+L T L+ + IG+ L ++++
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVA 131
Query: 423 ENSI-SGQVPWSLGKLSSLRYLDISNNQLNG-TVSEIHF 459
N I S ++P L++L ++D+S N + TV+++ F
Sbjct: 132 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 170
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 107 ALLDFEHLIYLNLSYN----DFKGIQIPRFLGSMGNLRFLDLSGAGFV-GMIPNQIGNLS 161
A L E L+YL++SY DF GI FLG + +L L ++G F + N N +
Sbjct: 414 AFLSLEKLLYLDISYTNTKIDFDGI----FLG-LTSLNTLKMAGNSFKDNTLSNVFANTT 468
Query: 162 NLQYLNLRPNYLGGLYVEDLGW 183
NL +L+L L E + W
Sbjct: 469 NLTFLDLSKCQL-----EQISW 485
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 117/290 (40%), Gaps = 61/290 (21%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271
+L +L+ ++ L FP + +L L+++HN + + L NLV +DLS
Sbjct: 100 SLENLVAVETKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 156
Query: 272 DNNFQGPIPDTIQNWTSLRH-------LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
N Q T+ + LR LD+S N ++ + +L L+L N
Sbjct: 157 YNYIQTI---TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 212
Query: 325 GRISSVLLENLSSIQS-------------------------LDLSFNELEWKIPRSFSR- 358
I L+NL+ + D++ +E FS
Sbjct: 213 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 272
Query: 359 ------FCNLRSISLSGIQLSH-QKVS-----QVLAIFSGCVSDVLESLD---LSNTTLS 403
N+ ++SL+G+ + + + V Q L+I C +LD L + TL+
Sbjct: 273 IVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIR-CQLKQFPTLDLPFLKSLTLT 331
Query: 404 ---GSLTNQIGKFKVLNSVDLSEN--SISGQVPWSLGKLSSLRYLDISNN 448
GS++ + L+ +DLS N S SG +S +SLR+LD+S N
Sbjct: 332 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292
S +NFS L LDLS + + ++ +GL +L L L+ N Q P + TSL +L
Sbjct: 46 SFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 104
Query: 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
+ L + + L+ L+++ N + NL+++ +DLS+N ++
Sbjct: 105 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 23/264 (8%)
Query: 219 LQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN--NFQ 276
L + CQL FP L + SL TL ++ I+ + L +L +LDLS N +F
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSL-TLTMNKGS-----ISFKKVALPSLSYLDLSRNALSFS 365
Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
G + SLRHLDLS N + ++ L++L + L+ +L
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLE 424
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396
+ LD+S+ + F +L ++ ++G +S V A + L LD
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN-----LTFLD 479
Query: 397 LSNTTL---SGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
LS L S + + + + ++LN +S N++ +L SL LD S N++ +
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLN---MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 454 VSEI-HFANLSSLTFFYASRNSLT 476
+ HF SL FF + NS+
Sbjct: 537 KGILQHFP--KSLAFFNLTNNSVA 558
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 24/159 (15%)
Query: 323 LQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS--------- 373
+ ++S V + SS +++DLSFN L+ SFS F L+ + LS ++
Sbjct: 19 MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 374 -HQKVSQVLA----------IFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422
H + +L FSG S LE+L T L+ + IG+ L ++++
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTS--LENLVAVETKLASLESFPIGQLITLKKLNVA 136
Query: 423 ENSI-SGQVPWSLGKLSSLRYLDISNNQLNG-TVSEIHF 459
N I S ++P L++L ++D+S N + TV+++ F
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 15/82 (18%)
Query: 107 ALLDFEHLIYLNLSYN----DFKGIQIPRFLGSMGNLRFLDLSGAGFV-GMIPNQIGNLS 161
A L E L+YL++SY DF GI FLG + +L L ++G F + N N +
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGI----FLG-LTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 162 NLQYLNLRPNYLGGLYVEDLGW 183
NL +L+L L E + W
Sbjct: 474 NLTFLDLSKCQL-----EQISW 490
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 92/401 (22%), Positives = 157/401 (39%), Gaps = 70/401 (17%)
Query: 102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLS 161
G +NP + ++ Y + D K ++P + S + + +DLS + N S
Sbjct: 2 GSLNPCIEVVPNITYQCM---DQKLSKVPDDIPS--STKNIDLSFNPLKILKSYSFSNFS 56
Query: 162 NLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLV-TNALRSLLVLQ 220
LQ+L+L + +ED W G + S G +L +L+ ++
Sbjct: 57 ELQWLDLSRCEIET--IEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIP 280
L FP + +L L+++HN + + L NLV +DLS N Q
Sbjct: 114 TKLASLESFP---IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI-- 168
Query: 281 DTIQNWTSLRH-------LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE 333
T+ + LR LD+S N ++ + +L L+L N I L+
Sbjct: 169 -TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQ 226
Query: 334 NLSSIQS-------------------------LDLSFNELEWKIPRSFSR-------FCN 361
NL+ + D++ +E FS N
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286
Query: 362 LRSISLSGIQLSH-QKVS-----QVLAIFSGCVSDVLESLD---LSNTTLS---GSLTNQ 409
+ ++SL+G+ + + + V Q L+I C +LD L + TL+ GS++ +
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIR-CQLKQFPTLDLPFLKSLTLTMNKGSISFK 345
Query: 410 IGKFKVLNSVDLSEN--SISGQVPWSLGKLSSLRYLDISNN 448
L+ +DLS N S SG +S +SLR+LD+S N
Sbjct: 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 291 HLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW 350
L L N F+ L+P+ L+ + L + LS+NR+ +S+ N++ + +L LS+N L
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 351 KIPRSFSRFCNLRSISLSGIQLS 373
PR+F +LR +SL G +S
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDIS 115
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN 273
R + L L G Q + P ++N+ L +DLS+N+ ++L + L+ L LS N
Sbjct: 31 RDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYN 88
Query: 274 NFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
+ P T SLR L L N S + N S L +L++ +N L
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA 854
+G + K + R +T + L N+F+ +P E++ + L ++LS+N S ++ M
Sbjct: 20 KGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 855 LLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG 910
L +L S NRL P+ L L ++ N++S V E F + S++
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS--VVPEGAFNDLSALSHLA 132
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299
+ L L NQF +L+ +L +L +DLS+N + N T L L LS N
Sbjct: 33 VTELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 300 SYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348
+ P + L LSL N + + +LS++ L + N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 29/172 (16%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--Q 258
L SL L + Q++ PL AN ++L LD+S N+ + SLIAT Q
Sbjct: 149 GLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 259 LYGLCNLVFL----DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
+ + L L +LS N Q T+ + T+L LDL++N S L P L+ ++L
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 264
Query: 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
L L +N++ IS L L+++ +L+L+ N+LE S NL++++
Sbjct: 265 ELKLGANQI-SNISP--LAGLTALTNLELNENQLE-----DISPISNLKNLT 308
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILV 735
L N T L +++ N S ++ A G + L SN+ + PL +L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTIS-DISALSG--LTSLQQLNFSSNQVTDLKPL--ANLTTLERLD 179
Query: 736 LAGNNLSGTIPTCISNFTAMATFLGSDS-IYTIQYPSDFSFPGKFFNITEQFVEEELITL 794
++ N +S+ + +A +S I T SD + G N+ E ++L
Sbjct: 180 ISSNK--------VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE-------LSL 224
Query: 795 EG---KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIG 851
G K + A L LT++DL+NN+ S P ++ L +L L L N S P +
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 852 AMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
+ L +L+ + N+LE P + NL L++ + +NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 31/209 (14%)
Query: 381 LAIFSGCVSDV--------LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
L +F+ ++D+ L L+LS+ T+S + + L ++ S N ++ P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP- 168
Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQ 488
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P +
Sbjct: 169 -LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTN 218
Query: 489 LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
L+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 219 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI 273
Query: 549 HGEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 274 SNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 10/195 (5%)
Query: 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338
IP I T + LDL SN S L + ++ ++L L L+ N+LQ + + E L ++
Sbjct: 31 IPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-LKNL 87
Query: 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398
++L ++ N+L+ F + NL + L QL S +F L L L
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK----SLPPRVFDSLTK--LTYLSLG 141
Query: 399 NTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIH 458
L K L + L N + + KL+ L+ L + NNQL V E
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Query: 459 FANLSSLTFFYASRN 473
F +L L N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 2/134 (1%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
L++L L + +L P +L L L NQ SL L L +L L
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGY 142
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLL 332
N Q TSL+ L L +N + +K + L+ L L +N+L+ R+
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Query: 333 ENLSSIQSLDLSFN 346
++L ++ L L N
Sbjct: 202 DSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 37/174 (21%)
Query: 394 SLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGT 453
S+D S+ L+ +N K L DL N +S + +L+ LR L +++N+L
Sbjct: 20 SVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL 76
Query: 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHL 513
+ I F L +L + + N L +A P + VF + L
Sbjct: 77 PAGI-FKELKNLETLWVTDNKL--QALP--IGVF-----------------------DQL 108
Query: 514 VNLD--ISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH----GEIPNLTEVSQL 561
VNL D + ++P R + S+T+ YLSL N++ G LT + +L
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 26/173 (15%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--Q 258
L SL L + Q++ PL AN ++L LD+S N+ + SLIAT Q
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 206
Query: 259 LYGLCNLVFL----DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314
+ + L L +LS N Q T+ + T+L LDL++N S L P L+ ++L
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 264
Query: 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
L L +N++ IS L L+++ +L+L+ N+LE P S NL ++L
Sbjct: 265 ELKLGANQI-SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILV 735
L N T L +++ N S ++ A G + L SN+ + PL +L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTIS-DISALSG--LTSLQQLSFSSNQVTDLKPL--ANLTTLERLD 179
Query: 736 LAGNNLSGTIPTCISNFTAMATFLGSDS-IYTIQYPSDFSFPGKFFNITEQFVEEELITL 794
++ N +S+ + +A +S I T SD + G N+ E ++L
Sbjct: 180 ISSNK--------VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE-------LSL 224
Query: 795 EG---KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIG 851
G K + A L LT++DL+NN+ S P ++ L +L L L N S P +
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 852 AMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
+ L +L+ + N+LE P + NL L++ + +NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 31/209 (14%)
Query: 381 LAIFSGCVSDV--------LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
L +F+ ++D+ L L+LS+ T+S + + L + S N ++ P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP- 168
Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQ 488
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P +
Sbjct: 169 -LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTN 218
Query: 489 LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
L+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 219 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI 273
Query: 549 HGEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 274 SNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 26/172 (15%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--QL 259
L SL L + Q++ PL AN ++L LD+S N+ + SLIAT Q+
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 207
Query: 260 YGLCNLVFL----DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEY 315
+ L L +LS N Q T+ + T+L LDL++N S L P L+ ++L
Sbjct: 208 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
L L +N++ IS L L+++ +L+L+ N+LE P S NL ++L
Sbjct: 266 LKLGANQI-SNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 312
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 30/224 (13%)
Query: 676 LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILV 735
L N T L +++ N S ++ A G + L SN+ + PL +L L+ L
Sbjct: 125 LKNLTNLNRLELSSNTIS-DISALSG--LTSLQQLSFSSNQVTDLKPL--ANLTTLERLD 179
Query: 736 LAGNNLSGTIPTCISNFTAMATFLGSDS-IYTIQYPSDFSFPGKFFNITEQFVEEELITL 794
++ N +S+ + +A +S I T SD + G N+ E ++L
Sbjct: 180 ISSNK--------VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE-------LSL 224
Query: 795 EG---KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIG 851
G K + A L LT++DL+NN+ S P ++ L +L L L N S P +
Sbjct: 225 NGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 280
Query: 852 AMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
+ L +L+ + N+LE P + NL L++ + +NN+S P
Sbjct: 281 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP 322
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 31/209 (14%)
Query: 381 LAIFSGCVSDV--------LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
L +F+ ++D+ L L+LS+ T+S + + L + S N ++ P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP- 168
Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQ 488
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P +
Sbjct: 169 -LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTN 218
Query: 489 LEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQI 548
L+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 219 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI 273
Query: 549 HGEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 274 SNISP-LAGLTALTNLELNENQLEDISPI 301
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 9/232 (3%)
Query: 264 NLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRL 323
N +L+L +NN Q DT ++ L L L N + N + L L L N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 324 QGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI 383
I S E LS ++ L L N +E +F+R +L + L ++ + +S+
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISE--GA 191
Query: 384 FSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYL 443
F G + +L + N +LT +G L +++S N P S LSSL+ L
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVG----LEELEMSGNHFPEIRPGSFHGLSSLKKL 247
Query: 444 DISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR 495
+ N+Q++ + F L+SL + N+L+ + + P+ L EL L
Sbjct: 248 WVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Query: 367 LSGIQLSHQKVSQV-LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENS 425
L +QL + Q+ + F+G S L +L+L + L+ + L + L N
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLAS--LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158
Query: 426 ISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
I ++ ++ SL LD+ + +SE F L +L Y + +K PN P
Sbjct: 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK--YLNLGMCNIKDMPNLTP 216
Query: 486 VFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI 523
+ LEEL++ + P H + L L + +S +
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--QLYGLCNLVFL- 268
G Q++ PL AN ++L LD+S N+ + SLIAT Q+ + L L
Sbjct: 163 GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 220
Query: 269 ---DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+LS N Q T+ + T+L LDL++N S L P L+ ++L L L +N++
Sbjct: 221 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-S 277
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
IS L L+++ +L+L+ N+LE S NL++++
Sbjct: 278 NISP--LAGLTALTNLELNENQLE-----DISPISNLKNLT 311
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
A L LT++DL+NN+ S P ++ L +L L L N S P + + L +L+ +
Sbjct: 239 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 294
Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
N+LE P + NL L++ + +NN+S P
Sbjct: 295 ENQLEDISPIS--NLKNLTYLTLYFNNISDISP 325
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQL 489
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P + L
Sbjct: 172 LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTNL 222
Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 223 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQIS 277
Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 278 NISP-LAGLTALTNLELNENQLEDISPI 304
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--QLYGLCNLVFL- 268
G Q++ PL AN ++L LD+S N+ + SLIAT Q+ + L L
Sbjct: 164 GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 221
Query: 269 ---DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+LS N Q T+ + T+L LDL++N S L P L+ ++L L L +N++
Sbjct: 222 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-S 278
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
IS L L+++ +L+L+ N+LE S NL++++
Sbjct: 279 NISP--LAGLTALTNLELNENQLE-----DISPISNLKNLT 312
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
A L LT++DL+NN+ S P ++ L +L L L N S P + + L +L+ +
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295
Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
N+LE P + NL L++ + +NN+S P
Sbjct: 296 ENQLEDISPIS--NLKNLTYLTLYFNNISDISP 326
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQL 489
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P + L
Sbjct: 173 LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTNL 223
Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 224 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQIS 278
Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 279 NISP-LAGLTALTNLELNENQLEDISPI 305
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 26/162 (16%)
Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--QLYGLCNLVFL- 268
G Q++ PL AN ++L LD+S N+ + SLIAT Q+ + L L
Sbjct: 159 GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 216
Query: 269 ---DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+LS N Q T+ + T+L LDL++N S L P L+ ++L L L +N++
Sbjct: 217 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-S 273
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISL 367
IS L L+++ +L+L+ N+LE P S NL ++L
Sbjct: 274 NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 311
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
A L LT++DL+NN+ S P ++ L +L L L N S P + + L +L+ +
Sbjct: 235 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 290
Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
N+LE P + NL L++ + +NN+S P
Sbjct: 291 ENQLEDISPIS--NLKNLTYLTLYFNNISDISP 321
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQL 489
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P + L
Sbjct: 168 LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTNL 218
Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 219 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQIS 273
Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 274 NISP-LAGLTALTNLELNENQLEDISPI 300
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 223 GCQLSHFPPLSVANFSSLVTLDLSHNQFDN-----------SLIAT--QLYGLCNLVFL- 268
G Q++ PL AN ++L LD+S N+ + SLIAT Q+ + L L
Sbjct: 159 GNQVTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT 216
Query: 269 ---DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+LS N Q T+ + T+L LDL++N S L P L+ ++L L L +N++
Sbjct: 217 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-S 273
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
IS L L+++ +L+L+ N+LE S NL++++
Sbjct: 274 NISP--LAGLTALTNLELNENQLE-----DISPISNLKNLT 307
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFS 862
A L LT++DL+NN+ S P ++ L +L L L N S P + + L +L+ +
Sbjct: 235 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 290
Query: 863 SNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895
N+LE P + NL L++ + +NN+S P
Sbjct: 291 ENQLEDISPIS--NLKNLTYLTLYFNNISDISP 321
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIH-FANLSSLTFFYASRNSLTLKANPNWVP---VFQL 489
L L++L LDIS+N+ VS+I A L++L A+ N ++ + P + L
Sbjct: 168 LANLTTLERLDISSNK----VSDISVLAKLTNLESLIATNNQIS-----DITPLGILTNL 218
Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
+EL L L L S +L +LD++++ I + P +T+ L L NQI
Sbjct: 219 DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQIS 273
Query: 550 GEIPNLTEVSQLGTLDLSANNLSGQLPL 577
P L ++ L L+L+ N L P+
Sbjct: 274 NISP-LAGLTALTNLELNENQLEDISPI 300
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 106/257 (41%), Gaps = 46/257 (17%)
Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
+ + PP N L L L N +SL + L L +S+NN + DT Q
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 286 WTSLRHLDLSSNHFSY----LIPEWLNK---FSRLEYLSL------------SSNRLQGR 326
TSL++L LSSN ++ LIP + ++ L L++ S N ++G
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 327 ISSVL---------------LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
++ L L N + +DLS+NELE + F + L + +S +
Sbjct: 224 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283
Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP 431
L V G L+ LDLS+ L NQ +F L ++ L NSI V
Sbjct: 284 L-------VALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI---VT 332
Query: 432 WSLGKLSSLRYLDISNN 448
L +L+ L +S+N
Sbjct: 333 LKLSTHHTLKNLTLSHN 349
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 266 VFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
+LDL N+ + TSL L L N L NK + L YL+LS+N+LQ
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
+ V + L+ ++ L L+ N+L+ F + L+ + L QL
Sbjct: 91 LPNGV-FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 245 LSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN-WTSLRHLDLSSNHFSYLI 303
L + FD TQLY L N Q +P+ + N TSL +L+LS+N L
Sbjct: 43 LPNGVFDELTSLTQLY---------LGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 304 PEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLR 363
+K ++L+ L+L++N+LQ V + L+ ++ L L N+L+ F R +L+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 364 SI 365
I
Sbjct: 152 YI 153
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 8/177 (4%)
Query: 201 SKVSNGPLVT-NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL 259
+++S+ P + A R+L +L L L+ + + L LDLS N S+
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 260 YGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
+GL L L L Q P + +L++L L N L + L +L L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 320 SNRLQGRISSVLLENLSSIQSLD---LSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
N RISSV + SLD L N + P +F L ++ L LS
Sbjct: 161 GN----RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 47/177 (26%), Positives = 70/177 (39%), Gaps = 8/177 (4%)
Query: 201 SKVSNGPLVT-NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQL 259
+++S+ P + A R+L +L L L+ + + L LDLS N S+
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 260 YGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLS 319
+GL L L L Q P + +L++L L N L + L +L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 320 SNRLQGRISSVLLENLSSIQSLD---LSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373
N RISSV + SLD L N + P +F L ++ L LS
Sbjct: 162 GN----RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 213 LRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272
L +L L L G QL P ++L L L NQ SL L NL +L L
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLYLYH 142
Query: 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324
N Q T+L LDL +N L +K ++L+ LSL+ N+L+
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372
+ YL+L N+L IS+ L+ L+++ L L+ N+L+ F + NL+ + L QL
Sbjct: 65 VRYLALGGNKLHD-ISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPW 432
S +F + L L L + L K L +DL N +
Sbjct: 122 Q----SLPDGVFDKLTN--LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469
KL+ L+ L +++NQL +V + F L+SLT +
Sbjct: 176 VFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIW 211
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 13/171 (7%)
Query: 123 DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182
D K +Q ++L N+R+L L G + + + L+NL YL L N L L G
Sbjct: 52 DIKSVQGIQYLP---NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPN---G 103
Query: 183 WXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242
L + +G V + L +L L L QL P ++L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTR 161
Query: 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHL 292
LDL +NQ SL L L L L+DN + +PD + TSL H+
Sbjct: 162 LDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHI 210
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 106/257 (41%), Gaps = 46/257 (17%)
Query: 226 LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQN 285
+ + PP N L L L N +SL + L L +S+NN + DT Q
Sbjct: 111 IRYLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 286 WTSLRHLDLSSNHFSY----LIPEWLN---KFSRLEYLSL------------SSNRLQGR 326
TSL++L LSSN ++ LIP + ++ L L++ S N ++G
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229
Query: 327 ISSVL---------------LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371
++ L L N + +DLS+NELE + F + L + +S +
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289
Query: 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVP 431
L V G L+ LDLS+ L NQ +F L ++ L NSI V
Sbjct: 290 L-------VALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSI---VT 338
Query: 432 WSLGKLSSLRYLDISNN 448
L +L+ L +S+N
Sbjct: 339 LKLSTHHTLKNLTLSHN 355
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 32/242 (13%)
Query: 109 LDFEHLIYLNLSYN--DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
+D L +L+LS N FKG G++ L++LDLS G + M N +G L L++L
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHL 425
Query: 167 NLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
+ + + L +S+ S V +LR+L+ L ++
Sbjct: 426 DFQHSNLK------------------------QMSEFS----VFLSLRNLIYLDISHTHT 457
Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
SSL L ++ N F + + L NL FLDLS + P +
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
+SL+ L++S N+F L + L+ L S N + L SS+ L+L+ N
Sbjct: 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577
Query: 347 EL 348
+
Sbjct: 578 DF 579
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 113 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 170
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 171 NLTNLEHLDLSSNKIQS 187
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNL 136
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR---HLDLS 295
SL LDLS N +++ GL L LD +N + ++ + SLR +LD+S
Sbjct: 398 SLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDIS 453
Query: 296 SNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS 355
H N S LE L ++ N Q + L ++ LDLS +LE P +
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 356 FSRFCNLRSISLS 368
F+ +L+ +++S
Sbjct: 514 FNSLSSLQVLNMS 526
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 826 ITVLRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
I L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 178/417 (42%), Gaps = 51/417 (12%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271
+L+ L+ ++ L +FP + + +L L+++HN + + L NL LDLS
Sbjct: 125 SLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181
Query: 272 DNNFQGPIPDTI----QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
N Q + Q LDLS N +++ P + RL L+L +N +
Sbjct: 182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 240
Query: 328 SSVLLENLSSIQSLDLSFNE------LEWKIPRSFSRFCNLRSISLSGIQLSH--QKVSQ 379
++ L+ ++ L E LE + CNL ++ +L++ +
Sbjct: 241 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL---TIEEFRLAYLDYYLDG 297
Query: 380 VLAIFSGCVSDVLESLDLSNTTLSG-------------SLTN-QIGKFKVLNSVDLSE-- 423
++ +F+ C+++V S L + T+ L N + G+F L L
Sbjct: 298 IIDLFN-CLTNV-SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 355
Query: 424 -NSISGQVPWSLGKLSSLRYLDISNNQLN--GTVSEIHFANLSSLTFFYASRNSLTLKAN 480
S G +S L SL +LD+S N L+ G S+ F + SL + S N + + +
Sbjct: 356 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI-SLKYLDLSFNGV-ITMS 413
Query: 481 PNWVPVFQLEELDLRSCYLGP--PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
N++ + QLE LD + L F +L +N L+ LDIS + N + ++
Sbjct: 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAF-NGIFNGLSSL 471
Query: 539 NYLSLSNNQIHGE-IPNL-TEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKN 590
L ++ N +P++ TE+ L LDLS L P S++ VL++S N
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQL 489
VP SL ++L LD+S+N L+ +E L++L S N L ++ +VPV L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 490 EELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549
LDL S +L L L + ++ IV N F + + Q L LS NQI
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQIS 149
Query: 550 G----EIPNLTEVSQLGTLDLSANNLSGQLPL 577
I + ++ +L LDLS+N L +LPL
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 5/148 (3%)
Query: 203 VSNGPLVTNALRSLLVLQLAGCQLSHFP--PLSVANFSSLVTLDLSHNQFDNSLIATQLY 260
S +V+ L + C P P S+ ++++L LDLSHN
Sbjct: 4 ASGRSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPT 61
Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
L NL L LS N+ + +LR+LDLSSNH L + LE L L +
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNEL 348
N + + E+++ +Q L LS N++
Sbjct: 122 NHI-VVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 89 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 147 NLTNLEHLDLSSNKIQS 163
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 95/242 (39%), Gaps = 32/242 (13%)
Query: 109 LDFEHLIYLNLSYN--DFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYL 166
+D L +L+LS N FKG G+ L++LDLS G + M N +G L L++L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMSSNFLG-LEQLEHL 401
Query: 167 NLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVLQLAGCQL 226
+ + + L + + NG + N L SL VL++AG
Sbjct: 402 DFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAG--- 454
Query: 227 SHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNW 286
N F + + L NL FLDLS + P +
Sbjct: 455 ---------------------NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 287 TSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346
+SL+ L++S N+F L + L+ L S N + L SS+ L+L+ N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553
Query: 347 EL 348
+
Sbjct: 554 DF 555
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLR---HLDL 294
+SL LDLS N +++ GL L LD +N + ++ + SLR +LD+
Sbjct: 373 TSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDI 428
Query: 295 SSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR 354
S H N S LE L ++ N Q + L ++ LDLS +LE P
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Query: 355 SFSRFCNLRSISLS 368
+F+ +L+ +++S
Sbjct: 489 AFNSLSSLQVLNMS 502
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 178/417 (42%), Gaps = 51/417 (12%)
Query: 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271
+L+ L+ ++ L +FP + + +L L+++HN + + L NL LDLS
Sbjct: 101 SLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157
Query: 272 DNNFQGPIPDTI----QNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
N Q + Q LDLS N +++ P + RL L+L +N +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216
Query: 328 SSVLLENLSSIQSLDLSFNE------LEWKIPRSFSRFCNLRSISLSGIQLSH--QKVSQ 379
++ L+ ++ L E LE + CNL ++ +L++ +
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL---TIEEFRLAYLDYYLDD 273
Query: 380 VLAIFSGCVSDVLESLDLSNTTLSG-------------SLTN-QIGKFKVLNSVDLSE-- 423
++ +F+ C+++V S L + T+ L N + G+F L L
Sbjct: 274 IIDLFN-CLTNV-SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 424 -NSISGQVPWSLGKLSSLRYLDISNNQLN--GTVSEIHFANLSSLTFFYASRNSLTLKAN 480
S G +S L SL +LD+S N L+ G S+ F +SL + S N + + +
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGV-ITMS 389
Query: 481 PNWVPVFQLEELDLRSCYLGP--PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQF 538
N++ + QLE LD + L F +L +N L+ LDIS + N + ++
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAF-NGIFNGLSSL 447
Query: 539 NYLSLSNNQIHGE-IPNL-TEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKN 590
L ++ N +P++ TE+ L LDLS L P S++ VL++S N
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 113
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 90 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 148 NLTNLEHLDLSSNKIQS 164
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
++L+ L+ ++ L +FP + + +L L+++HN + + L NL LDL
Sbjct: 101 SSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 271 SDNNFQGPIPDTIQNWTSLRHLD----------LSSNHFSYLIPEWLNKFSRLEYLSLSS 320
S N Q T LR L LS N +++ P + RL+ L+L +
Sbjct: 158 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDT 210
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSG 369
N+L+ + + + L+S+Q + L N + PR SR+ N S G
Sbjct: 211 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 260
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 114
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLS+N L SF F L+ + LS ++ ++Q +S +
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 91 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 149 NLTNLEHLDLSSNKIQS 165
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
++L+ L+ ++ L +FP + + +L L+++HN + + L NL LDL
Sbjct: 102 SSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 271 SDNNFQGPIPDTIQNWTSLRHLD----------LSSNHFSYLIPEWLNKFSRLEYLSLSS 320
S N Q T LR L LS N +++ P + RL+ L+L +
Sbjct: 159 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDT 211
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSG 369
N+L+ + + + L+S+Q + L N + PR SR+ N S G
Sbjct: 212 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 261
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 113
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 114 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLS+N L SF F L+ + LS ++ ++Q +S +
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 90 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 147
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 148 NLTNLEHLDLSSNKIQS 164
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
++L+ L+ ++ L +FP + + +L L+++HN + + L NL LDL
Sbjct: 101 SSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 271 SDNNFQGPIPDTIQNWTSLRHLD----------LSSNHFSYLIPEWLNKFSRLEYLSLSS 320
S N Q T LR L LS N +++ P + RL+ L+L +
Sbjct: 158 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDT 210
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSG 369
N+L+ + + + L+S+Q + L N + PR SR+ N S G
Sbjct: 211 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 260
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 89 QSLALGAFSGLSS--LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 147 NLTNLEHLDLSSNKIQS 163
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
++L+ L+ ++ L +FP + + +L L+++HN + + L NL LDL
Sbjct: 100 SSLQKLVAVETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 271 SDNNFQGPIPDTIQNWTSLRHLD----------LSSNHFSYLIPEWLNKFSRLEYLSLSS 320
S N Q T LR L LS N +++ P + RL+ L+L +
Sbjct: 157 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDT 209
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSG 369
N+L+ + + + L+S+Q + L N + PR SR+ N S G
Sbjct: 210 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 259
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 216 LLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275
L VL L+ C++ + + S L TL L+ N SL GL +L L + N
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVALETNL 114
Query: 276 QGPIPDTIQNWTSLRHLDLSSNHF-SYLIPEWLNKFSRLEYLSLSSNRLQG 325
I + +L+ L+++ N S+ +PE+ + + LE+L LSSN++Q
Sbjct: 115 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 23/137 (16%)
Query: 337 SIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL------SHQKVSQV---------- 380
S ++LDLSFN L SF F L+ + LS ++ ++Q +S +
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 381 ----LAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI-SGQVPWSLG 435
L FSG S L+ L T L+ IG K L ++++ N I S ++P
Sbjct: 91 QSLALGAFSGLSS--LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 148
Query: 436 KLSSLRYLDISNNQLNG 452
L++L +LD+S+N++
Sbjct: 149 NLTNLEHLDLSSNKIQS 165
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 829 LRELRSLNLSHNFF-SGRIPENIGAMALLESLDFSSNRLEG 868
L+ L+ LN++HN S ++PE + LE LD SSN+++
Sbjct: 125 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270
++L+ L+ L+ L +FP + + +L L+++HN + + L NL LDL
Sbjct: 102 SSLQKLVALETNLASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 271 SDNNFQGPIPDTIQNWTSLRHLD----------LSSNHFSYLIPEWLNKFSRLEYLSLSS 320
S N Q T LR L LS N +++ P + RL+ L+L +
Sbjct: 159 SSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDT 211
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPR--SFSRFCNLRSISLSG 369
N+L+ + + + L+S+Q + L N + PR SR+ N S G
Sbjct: 212 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 261
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 209 VTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268
V L+ L VL LA +++ + +L L+LS+N L ++ YGL + ++
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYI 343
Query: 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSN-----HFSYLIPEWL---NKFSRLEYLSLSS 320
DL N+ T + L+ LDL N HF IP+ NK L ++L++
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403
Query: 321 NRLQGRISSVLLENL 335
N + +S LENL
Sbjct: 404 NLIH--LSENRLENL 416
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 414 KVLNSVDLSENSI-SGQVPWSLGKLSSLRYLDISNNQLNGTVS-EIHFANLSSLTFFYAS 471
K L +DLS+N I S + S GKL+SL+ +D S+NQ+ E+ +L+FF +
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182
Query: 472 RNSLTLKANPNW 483
NSL + + +W
Sbjct: 183 ANSLYSRVSVDW 194
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 123/306 (40%), Gaps = 55/306 (17%)
Query: 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLS 295
N +L LDLS NQ SL +G N SL+ +D S
Sbjct: 121 NLKALTRLDLSKNQI-RSLYLHPSFGKLN-----------------------SLKSIDFS 156
Query: 296 SNHFSYLIPEWLNKF--SRLEYLSLSSNRLQGRISSVLLENLSSIQS-----LDLSFNEL 348
SN + L L + SL++N L R+S + ++ ++ LD+S N
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAI----------FSGCVSDVLESLDLS 398
I +FS + +S + S I L+H + F+G + LDLS
Sbjct: 217 TVDITGNFSNAIS-KSQAFSLI-LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274
Query: 399 NT---TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVS 455
+ +L+ + + KVLN L+ N I+ + L +L+ L++S N L G +
Sbjct: 275 HGFVFSLNSRVFETLKDLKVLN---LAYNKINKIADEAFYGLDNLQVLNLSYNLL-GELY 330
Query: 456 EIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR-----SCYLGPPFPSWLHSQ 510
+F L + + +N + + + + + +L+ LDLR + + P P S
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 511 NHLVNL 516
N LV L
Sbjct: 391 NKLVTL 396
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 93/412 (22%), Positives = 173/412 (41%), Gaps = 66/412 (16%)
Query: 242 TLDLSHNQFDNSLIATQLYGLC---NLVFLDLSDNNFQGPIPDTIQNW--TSLRHLDLSS 296
T+D++ N F N++ +Q + L +++ +N + P +T +S+RHLDLS
Sbjct: 217 TVDITGN-FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275
Query: 297 NHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSF 356
L L+ L+L+ N++ +I+ L ++Q L+LS+N L
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKI-NKIADEAFYGLDNLQVLNLSYNLLGELYS--- 331
Query: 357 SRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTL-------------- 402
S F L ++ +Q +H + Q + L++LDL + L
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTF---KFLEKLQTLDLRDNALTTIHFIPSIPDIFL 388
Query: 403 SGSLTNQIGKFKVL-NSVDLSENSISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFA 460
SG+ + K + N + LSEN + + + L ++ L+ L ++ N+ + + +
Sbjct: 389 SGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 461 NLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISD 520
SL + N L L W E +L C+ F H Q +N
Sbjct: 449 ENPSLEQLFLGENMLQLA----W-------ETEL--CW--DVFEGLSHLQVLYLN----- 488
Query: 521 SGIVDTIPNRFWKSITQFNYLSLSNNQI----HGEIPNLTEVSQLGTLDLSANNLSGQLP 576
++++P + +T LSL++N++ H ++P + L LD+S N L P
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-----ANLEILDISRNQLLAPNP 543
Query: 577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCW 628
+ ++ VLD++ NK F+C E + +N + +AG D +
Sbjct: 544 DVFVSLSVLDITHNK-------FIC-ECELSTFINWLNHTNVTIAGPPADIY 587
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 139/346 (40%), Gaps = 76/346 (21%)
Query: 97 SSALVGKINPALLD-FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN 155
S V +N + + + L LNL+YN I F G + NL+ L+LS + +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYSS 332
Query: 156 QIGNLSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRS 215
L + Y++L+ N++ + + + L K+ L NAL +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKF----------------LEKLQTLDLRDNALTT 376
Query: 216 LLVLQ------LAGCQLSHFPPLSV-ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268
+ + L+G +L P +++ AN + LS N+ +N I L + +L L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTANL-----IHLSENRLENLDILYFLLRVPHLQIL 431
Query: 269 DLSDNNF------QGPIP------------------------DTIQNWTSLRHLDLSSNH 298
L+ N F Q P D + + L+ L L+ N+
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491
Query: 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSR 358
+ L P + + L LSL+SNRL + L NL + LD+S N+L P F
Sbjct: 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL---EILDISRNQLLAPNPDVF-- 546
Query: 359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG 404
+SLS + ++H K I +S + L+ +N T++G
Sbjct: 547 ------VSLSVLDITHNKF-----ICECELSTFINWLNHTNVTIAG 581
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 372 LSHQKVSQ-------------VLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNS 418
L H+K+SQ V+ S + +LDLSN + +++ I K+ L
Sbjct: 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR 251
Query: 419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476
+ L+ NS++ ++P + LS+LR LD+S+N+L +E+ + L +FY N +T
Sbjct: 252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAEL--GSCFQLKYFYFFDNMVT 306
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864
LT + L+ N + E+PAEI L LR L+LSHN + +P +G+ L+ F N
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN 303
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 199 DLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQ 258
+L ++S+ L L L+ L+L QL+ P + S + L L N+ I+ +
Sbjct: 40 ELGRISSDGLF-GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNK 96
Query: 259 LY-GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFS-----YLIPEWLNKFS 311
++ GL L L+L DN +P + ++ SL L+L+SN F+ EWL K S
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKS 155
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 266 VFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
L++S N I + + LR L +S N YL LEYL LS N+L
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-V 82
Query: 326 RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385
+IS NL + LDLSFN + +P F N+ + G+ +H + S VL I
Sbjct: 83 KISCHPTVNL---KHLDLSFNAFD-ALPIC-KEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 386 GCVSDVL 392
+S VL
Sbjct: 138 LNISKVL 144
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 36/222 (16%)
Query: 361 NLRSISLSGIQLS----HQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQI---GKF 413
+ R SG L HQ VS V + ++ ++++ N T+SG+ + K
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
Query: 414 KVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN--GTVSEIHFANLSSLTFFYAS 471
+D S N ++ V + G L+ L L + NQL ++E+ + SL S
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDIS 382
Query: 472 RNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531
+NS++ C SW S L++L++S + + DTI F
Sbjct: 383 QNSVSYDEKKG-------------DC-------SWTKS---LLSLNMSSNILTDTI---F 416
Query: 532 WKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG 573
+ L L +N+I + ++ L L++++N L
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLS 145
L +L+LS+N F + I + G+M L+FL LS
Sbjct: 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 16/214 (7%)
Query: 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475
+N VDLS NSI+ S +L L++L + + F LSSL N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPS--WLHSQNHLVNLDISDSGIVDTIPNRFWK 533
+ + LE L L C L S + L L + D+ I P F+
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 534 SITQFNYLSLSNNQI-----------HGEIPNLTEVSQLGTLDLSANNLSGQL---PLLA 579
++ +F+ L L+ N++ G+ L +S + D++ L + P
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQII 613
+++ LDLS N S+ GT++ +I
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 133/342 (38%), Gaps = 60/342 (17%)
Query: 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348
+ ++DLS N + L ++ L++L + I + LSS+ L L +N+
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTN 408
+F+ NL ++L+ L A+ SG L SL++
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDG-------AVLSGNFFKPLTSLEM----------- 133
Query: 409 QIGKFKVLNSVDLSENSISGQVPWSLG-KLSSLRYLDISNNQLNGTVSEIHFANLSSLTF 467
+ L +N+I P S + LD++ N++ ++ E N F
Sbjct: 134 ----------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHF 182
Query: 468 FYASRNSLTLK-ANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526
+S+TL+ N W L C G PF + + LD+S +G ++
Sbjct: 183 TLLRLSSITLQDMNEYW--------LGWEKC--GNPFKN-----TSITTLDLSGNGFKES 227
Query: 527 IPNRFWKSI--TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV 584
+ RF+ +I T+ L LSN+ G S G + + L AS V
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMG--------SSFGHTNFKDPDNFTFKGLEASGVKT 279
Query: 585 LDLSKNKLSGSILHFVCHETNGTRLT----QIINLEDNLLAG 622
DLSK+K+ + H T+ +LT +I ++DN G
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 43/159 (27%)
Query: 332 LENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDV 391
L+NL+ I L+LS N L ++ S L+SI + L + S ++DV
Sbjct: 87 LKNLTKITELELSGNPL-----KNVSAIAGLQSI-------------KTLDLTSTQITDV 128
Query: 392 LESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451
T L+G + +VL +DL N I+ P L L++L+YL I NNQ+N
Sbjct: 129 --------TPLAG-----LSNLQVL-YLDL--NQITNISP--LAGLTNLQYLSIGNNQVN 170
Query: 452 GTVSEIHFANLSSLTFFYASRNSLT----LKANPNWVPV 486
ANLS LT A N ++ L + PN + V
Sbjct: 171 DLTP---LANLSKLTTLRADDNKISDISPLASLPNLIEV 206
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 167/448 (37%), Gaps = 49/448 (10%)
Query: 101 VGKINPALLD-FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
+ K+ P L L LNL +N+ + F NL L L + N
Sbjct: 66 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVK 124
Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVL 219
NL L+L N GL LG + + + L A SL L
Sbjct: 125 QKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 181
Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI 279
+L+ Q+ F P L L L++ Q SL L N +LS +N Q
Sbjct: 182 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 241
Query: 280 PDTIQ----NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
WT+L LDLS N+ + + + +LEY L N +Q S
Sbjct: 242 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS------- 294
Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ------------LSHQKVSQ---- 379
SL FN + RSF++ +SISL+ + L H +
Sbjct: 295 ---HSLHGLFNVRYLNLKRSFTK----QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 347
Query: 380 --VLAIFSGCVSDVLESLDLSNTTLS-GSLTNQIG---KFKVLNSVDLSENSISGQVPWS 433
+F+G ++ L+ L LSN+ S +LTN+ L+ ++L++N IS +
Sbjct: 348 GIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 405
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELD 493
L L LD+ N++ ++ + L ++ Y S N ++ V L+ L
Sbjct: 406 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 465
Query: 494 LRSCYLG--PPFPSWLHSQNHLVNLDIS 519
LR L PS +L LD+S
Sbjct: 466 LRRVALKNVDSSPSPFQPLRNLTILDLS 493
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 7/159 (4%)
Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
V L V + P LR+L +L L+ +++ + L LDL HN
Sbjct: 469 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 528
Query: 258 Q-------LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
L GL +L L+L N F + ++ L+ +DL N+ + L N
Sbjct: 529 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 588
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
L+ L+L N + V ++ LD+ FN +
Sbjct: 589 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 627
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGI 370
+ + L+L+ N+L+ R+ + S + SLD+ FN + P + L+ ++L
Sbjct: 30 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-- 86
Query: 371 QLSHQKVSQVL-AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
H ++SQ+ F+ C + L L L + ++ N K K L ++DLS N +S
Sbjct: 87 ---HNELSQLSDKTFAFCTN--LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIH--FANLSSLTFFYASRNSLTLKANPNWVPVF 487
+ +L +L+ L +SNN++ SE FAN SSL S N + + + +
Sbjct: 142 KLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIG 200
Query: 488 QLEELDLRSCYLGPPFPSWLH---SQNHLVNLDISDSGIVDTIPNRF----WKSITQ--- 537
+L L L + LGP L + + NL +S+S + T F W ++T
Sbjct: 201 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 260
Query: 538 -FNYLSLSNNQIHGEIPNL 555
+N L++ N +P L
Sbjct: 261 SYNNLNVVGNDSFAWLPQL 279
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 167/448 (37%), Gaps = 49/448 (10%)
Query: 101 VGKINPALLD-FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
+ K+ P L L LNL +N+ + F NL L L + N
Sbjct: 71 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVK 129
Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVL 219
NL L+L N GL LG + + + L A SL L
Sbjct: 130 QKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 186
Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI 279
+L+ Q+ F P L L L++ Q SL L N +LS +N Q
Sbjct: 187 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 246
Query: 280 PDTIQ----NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
WT+L LDLS N+ + + + +LEY L N +Q S
Sbjct: 247 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS------- 299
Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ------------LSHQKVSQ---- 379
SL FN + RSF++ +SISL+ + L H +
Sbjct: 300 ---HSLHGLFNVRYLNLKRSFTK----QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 352
Query: 380 --VLAIFSGCVSDVLESLDLSNTTLS-GSLTNQIG---KFKVLNSVDLSENSISGQVPWS 433
+F+G ++ L+ L LSN+ S +LTN+ L+ ++L++N IS +
Sbjct: 353 GIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 410
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELD 493
L L LD+ N++ ++ + L ++ Y S N ++ V L+ L
Sbjct: 411 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 470
Query: 494 LRSCYLG--PPFPSWLHSQNHLVNLDIS 519
LR L PS +L LD+S
Sbjct: 471 LRRVALKNVDSSPSPFQPLRNLTILDLS 498
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 7/159 (4%)
Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
V L V + P LR+L +L L+ +++ + L LDL HN
Sbjct: 474 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 533
Query: 258 Q-------LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
L GL +L L+L N F + ++ L+ +DL N+ + L N
Sbjct: 534 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 593
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
L+ L+L N + V ++ LD+ FN +
Sbjct: 594 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 632
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGI 370
+ + L+L+ N+L+ R+ + S + SLD+ FN + P + L+ ++L
Sbjct: 35 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-- 91
Query: 371 QLSHQKVSQVL-AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
H ++SQ+ F+ C + L L L + ++ N K K L ++DLS N +S
Sbjct: 92 ---HNELSQLSDKTFAFCTN--LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIH--FANLSSLTFFYASRNSLTLKANPNWVPVF 487
+ +L +L+ L +SNN++ SE FAN SSL S N + + + +
Sbjct: 147 KLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIG 205
Query: 488 QLEELDLRSCYLGPPFPSWLH---SQNHLVNLDISDSGIVDTIPNRF----WKSITQ--- 537
+L L L + LGP L + + NL +S+S + T F W ++T
Sbjct: 206 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 265
Query: 538 -FNYLSLSNNQIHGEIPNL 555
+N L++ N +P L
Sbjct: 266 SYNNLNVVGNDSFAWLPQL 284
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 109/448 (24%), Positives = 167/448 (37%), Gaps = 49/448 (10%)
Query: 101 VGKINPALLD-FEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGN 159
+ K+ P L L LNL +N+ + F NL L L + N
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 160 LSNLQYLNLRPNYLGGLYVEDLGWXXXXXXXXXXXXXGVDLSKVSNGPLVTNALRSLLVL 219
NL L+L N GL LG + + + L A SL L
Sbjct: 120 QKNLITLDLSHN---GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176
Query: 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI 279
+L+ Q+ F P L L L++ Q SL L N +LS +N Q
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 280 PDTIQ----NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335
WT+L LDLS N+ + + + +LEY L N +Q S
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS------- 289
Query: 336 SSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ------------LSHQKVSQ---- 379
SL FN + RSF++ +SISL+ + L H +
Sbjct: 290 ---HSLHGLFNVRYLNLKRSFTK----QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 380 --VLAIFSGCVSDVLESLDLSNTTLS-GSLTNQIG---KFKVLNSVDLSENSISGQVPWS 433
+F+G ++ L+ L LSN+ S +LTN+ L+ ++L++N IS +
Sbjct: 343 GIKSNMFTGLIN--LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 434 LGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELD 493
L L LD+ N++ ++ + L ++ Y S N ++ V L+ L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 494 LRSCYLG--PPFPSWLHSQNHLVNLDIS 519
LR L PS +L LD+S
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLS 488
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 7/159 (4%)
Query: 198 VDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIAT 257
V L V + P LR+L +L L+ +++ + L LDL HN
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 258 Q-------LYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310
L GL +L L+L N F + ++ L+ +DL N+ + L N
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ 583
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349
L+ L+L N + V ++ LD+ FN +
Sbjct: 584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 23/259 (8%)
Query: 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGI 370
+ + L+L+ N+L+ R+ + S + SLD+ FN + P + L+ ++L
Sbjct: 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-- 81
Query: 371 QLSHQKVSQVL-AIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQ 429
H ++SQ+ F+ C + L L L + ++ N K K L ++DLS N +S
Sbjct: 82 ---HNELSQLSDKTFAFCTN--LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Query: 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIH--FANLSSLTFFYASRNSLTLKANPNWVPVF 487
+ +L +L+ L +SNN++ SE FAN SSL S N + + + +
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGCFHAIG 195
Query: 488 QLEELDLRSCYLGPPFPSWLH---SQNHLVNLDISDSGIVDTIPNRF----WKSITQ--- 537
+L L L + LGP L + + NL +S+S + T F W ++T
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255
Query: 538 -FNYLSLSNNQIHGEIPNL 555
+N L++ N +P L
Sbjct: 256 SYNNLNVVGNDSFAWLPQL 274
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 234 VANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293
++ S L L LSHN+ + L+ +L +LD+S N Q + SLRHLD
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQ-DLEYLDVSHNRLQN---ISCCPMASLRHLD 127
Query: 294 LSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQ 324
LS N F L + + ++L +L LS+ + +
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 114 LIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGF 149
L +L+LS+NDF + + + G++ L FL LS A F
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 811 IDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI 870
+ LS N S +I+ L ELR L LSHN LE LD S NRL+
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-- 114
Query: 871 PKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG 910
+ + L H ++S+N+ +P +F +++G
Sbjct: 115 -ISCCPMASLRHLDLSFNDF-DVLPVCKEFGNLTKLTFLG 152
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ 276
L+LQ G + L N SSL TLD+S N ++ +++ L+LS N
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441
Query: 277 GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLS 336
G + + ++ LDL +N IP+ + L+ L+++SN+L+ + + + L+
Sbjct: 442 GSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLT 497
Query: 337 SIQSLDLSFNELEWKIP 353
S+Q + L N + P
Sbjct: 498 SLQYIWLHDNPWDCTCP 514
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 19/143 (13%)
Query: 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANN 570
N+L+ L++ D+ I D P K++T+ L LS N + + + + + TLDL++
Sbjct: 63 NNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQ 118
Query: 571 LSGQLPLLA-SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLED-NLLAGEIPDC- 627
++ PL SN+ VL L N++ TN + L + NL+ ++ ++ D
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQI-----------TNISPLAGLTNLQYLSIGNAQVSDLT 167
Query: 628 -WMNWRYLLVLRLDNNKFTGKLP 649
N L L+ D+NK + P
Sbjct: 168 PLANLSKLTTLKADDNKISDISP 190
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 124/316 (39%), Gaps = 54/316 (17%)
Query: 307 LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSIS 366
L K +L L N+L+G++ + E + SL+L++N++ +IP +F F
Sbjct: 326 LQKXKKLGXLECLYNQLEGKLPAFGSE--IKLASLNLAYNQIT-EIPANFCGFTE----Q 378
Query: 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI 426
+ + +H K+ + IF V ++D S N+IG SVD
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVXSAIDFS--------YNEIG------SVDGKNFDP 424
Query: 427 SGQVPWSLGKLSSLRYLDISNNQLN-------GTVSEIHFANLSSLTFFYASRNSLTLKA 479
P+ +SS+ ++SNNQ++ T S + NL +NSL
Sbjct: 425 LDPTPFKGINVSSI---NLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLK-DE 480
Query: 480 NPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ-NHLVNLDISDSGIVDTIPNRFWKSITQ- 537
N N+ + L +DLR L + + +LV +D+S N F K TQ
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS--------YNSFSKFPTQP 532
Query: 538 -----------FNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSANNLSGQLPLLASNVMVL 585
N N+ E P +T L L + +N++ + N+ VL
Sbjct: 533 LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592
Query: 586 DLSKNKLSGSILHFVC 601
D+ N L +VC
Sbjct: 593 DIKDNPNISIDLSYVC 608
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI-GAMALLESLDFSSNRLEGEIPK-- 872
N+ G++PA + ++ L SLNL++N + IP N G +E+L F+ N+L+ IP
Sbjct: 340 NQLEGKLPAFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396
Query: 873 NTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG 910
+ ++ S + SYN + G V D F D + + G
Sbjct: 397 DAKSVSVXSAIDFSYNEI-GSV-DGKNFDPLDPTPFKG 432
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 394 SLDLSNTTLSGSLTNQIGKF---KVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQL 450
SLDLS+ +L ++ + LNS++LS + QVP L + LR LD+S+N+L
Sbjct: 228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL 284
Query: 451 NGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485
N + ++LTL NP VP
Sbjct: 285 NRAPQPDELPEV----------DNLTLDGNPFLVP 309
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 221 LAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDN-NFQGPI 279
L G ++S+ P S + +L L L N + A GL L LDLSDN +
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNAL-AGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 280 PDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG 325
P T + L L L L P + L+YL L N LQ
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320
GL L +L L DNN Q +T ++ +L HL L N + L+ L L
Sbjct: 126 GLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 321 NRLQGRISSVLLENLSSIQSLDLSFNEL 348
N + R+ +L + +L L N L
Sbjct: 186 NHV-ARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR 326
L L DN P T L LDL +N + L +K ++L LSL+ N+L+
Sbjct: 42 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS- 100
Query: 327 ISSVLLENLSSI 338
I +NL S+
Sbjct: 101 IPRGAFDNLKSL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISS 329
L DN P T L LDL +N + L +K ++L LSL+ N+L+ I
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
Query: 330 VLLENLSSI 338
+NL S+
Sbjct: 96 GAFDNLKSL 104
>pdb|1R4S|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 9- Methyl Uric Acid
pdb|1R4U|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor Oxonic Acid
pdb|1R56|A Chain A, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|B Chain B, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|C Chain C, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|D Chain D, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|E Chain E, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|F Chain F, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|G Chain G, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1R56|H Chain H, Uncomplexed Urate Oxidase From Aspergillus Flavus
pdb|1WRR|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
5-Amino 6-Nitro Uracil
pdb|1WS2|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS2|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With 5,6-
Diaminouracil
pdb|1WS3|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1WS3|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With
Uracil
pdb|1XT4|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XXJ|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XXJ|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With 5-
Amino 6-Nitro Uracil
pdb|1XY3|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|B Chain B, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|C Chain C, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|D Chain D, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|E Chain E, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|F Chain F, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|G Chain G, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|1XY3|H Chain H, Urate Oxidase From Aspergillus Flavus Complexed With
Guanine
pdb|2FXL|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Allantoin
pdb|3GKO|A Chain A, Crystal Structure Of Urate Oxydase Using Surfactant
Poloxamer 188 As A New Crystallizing Agent
pdb|1R51|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8- Azaxanthin
Length = 301
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
P F +E+ ++ +EGK + K+ L LT + +N++F G + E T L+E
Sbjct: 117 PHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKE 172
>pdb|3L8W|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With
Xanthin
pdb|3L9G|A Chain A, Urate Oxidase Complexed With Uric Acid And Chloride
pdb|3LBG|A Chain A, Urate Oxidase Complexed With 8-Thio Xanthine
pdb|3LD4|A Chain A, Urate Oxidase Complexed With 8-Nitro Xanthine
Length = 296
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
P F +E+ ++ +EGK + K+ L LT + +N++F G + E T L+E
Sbjct: 118 PHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKE 173
>pdb|2PES|A Chain A, Urate Oxidase In Complex With Tris-Dipicolinate Lutetium
Length = 295
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
P F +E+ ++ +EGK + K+ L LT + +N++F G + E T L+E
Sbjct: 117 PHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKE 172
>pdb|2ZKA|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 1.0 Mpa
Oxygen Pressure
pdb|2ZKB|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 2.5 Mpa
Oxygen Pressure
pdb|3CKS|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine Under 4.0 Mpa
Oxygen Pressure
pdb|3CKU|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8-Azaxanthin And Chloride
pdb|3F2M|A Chain A, Urate Oxidase Complexed With 8-Azaxanthine At 150 Mpa
pdb|3PJK|A Chain A, Urate Oxidase Under 1.0 Mpa 10 BARS PRESSURE OF XENON
pdb|3PK3|A Chain A, Urate Oxidase Under 3.0 Mpa 30 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PK4|A Chain A, Urate Oxidase Under 3.2 Mpa 32 BARS PRESSURE OF XENON
pdb|3PK5|A Chain A, Urate Oxidase Under 0.1 Mpa 1 BAR PRESSURE OF XENON
pdb|3PK6|A Chain A, Urate Oxidase Under 0.2 Mpa 2 BARS PRESSURE OF XENON
pdb|3PK8|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKF|A Chain A, Urate Oxidase Under 0.2 Mpa 2 BARS PRESSURE OF EQUIMOLAR
MIXTURE OF Xenon And Nitrous Oxide
pdb|3PKG|A Chain A, Urate Oxidase Under 2 Mpa 20 BARS PRESSURE OF XENON
pdb|3PKH|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF XENON
pdb|3PKK|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF XENON
pdb|3PKL|A Chain A, Urate Oxidase Under 0.8 Mpa 8 BARS PRESSURE OF XENON
pdb|3PKS|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKT|A Chain A, Urate Oxidase Under 2 Mpa 20 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PKU|A Chain A, Urate Oxidase Under 1 Mpa 10 BARS PRESSURE OF NITROUS
OXIDE
pdb|3PLE|A Chain A, Urate Oxidase Under 0.5 Mpa 5 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLG|A Chain A, Urate Oxidase Under 1.0 Mpa 10 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLH|A Chain A, Urate Oxidase Under 1.5 Mpa 15 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLI|A Chain A, Urate Oxidase Under 1.8 Mpa 18 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLJ|A Chain A, Urate Oxidase Under 3.0 Mpa 30 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3PLM|A Chain A, Urate Oxidase Under 2.0 Mpa 20 BARS PRESSURE OF EQUIMOLAR
MIXTURE Xenon : Nitrous Oxide
pdb|3OBP|A Chain A, Anaerobic Complex Of Urate Oxidase With Uric Acid
pdb|3P9O|A Chain A, Aerobic Ternary Complex Of Urate Oxidase With Azide And
Chloride
pdb|3P9F|A Chain A, Urate Oxidase-Azaxanthine-Azide Ternary Complex
pdb|2ICQ|A Chain A, Urate Oxidase Under 2.0 Mpa Pressure Of Nitrous Oxide
pdb|2IBA|A Chain A, Urate Oxidase From Aspergillus Flavus Complexed With Its
Inhibitor 8- Azaxanthine
pdb|2IC0|A Chain A, Urate Oxidase Under 2.0 Mpa Pressure Of Xenon
Length = 302
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
P F +E+ ++ +EGK + K+ L LT + +N++F G + E T L+E
Sbjct: 118 PHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKE 173
>pdb|3BJP|A Chain A, Urate Oxidase Cyanide Uric Acid Ternary Complex
pdb|3BK8|A Chain A, Urate Oxidase Aza-Xanthine Complex In Cyanide
pdb|2FUB|A Chain A, Crystal Structure Of Urate Oxidase At 140 Mpa
Length = 301
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE 831
P F +E+ ++ +EGK + K+ L LT + +N++F G + E T L+E
Sbjct: 117 PHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKE 172
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRI 327
L L DN P T L LDL +N + L +K ++L LSL+ N+L+ I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-I 93
Query: 328 SSVLLENLSSI 338
+NL S+
Sbjct: 94 PRGAFDNLRSL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,821,581
Number of Sequences: 62578
Number of extensions: 1094341
Number of successful extensions: 3590
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2438
Number of HSP's gapped (non-prelim): 504
length of query: 960
length of database: 14,973,337
effective HSP length: 108
effective length of query: 852
effective length of database: 8,214,913
effective search space: 6999105876
effective search space used: 6999105876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)