Query 035852
Match_columns 960
No_of_seqs 874 out of 5467
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-71 2.3E-76 703.3 45.0 584 32-918 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.6E-56 1E-60 561.0 37.4 515 214-915 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 1.6E-38 3.4E-43 322.4 -8.0 496 238-897 45-545 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 1.6E-38 3.5E-43 322.3 -13.0 472 233-867 63-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 2.9E-35 6.2E-40 311.6 5.6 250 240-523 54-305 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.1E-34 2.5E-39 307.1 9.0 369 391-863 79-448 (873)
7 KOG0618 Serine/threonine phosp 100.0 8.2E-35 1.8E-39 324.9 -2.6 244 579-889 240-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 6.5E-34 1.4E-38 317.8 -5.6 496 103-739 12-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7.8E-33 1.7E-37 294.4 0.2 358 405-897 46-410 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.6E-32 3.4E-37 292.1 -3.9 371 109-718 4-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 3.2E-25 7E-30 225.9 -2.5 301 415-759 68-371 (498)
12 KOG4237 Extracellular matrix p 99.9 4.6E-25 9.9E-30 224.8 -1.8 278 214-499 67-358 (498)
13 PRK15387 E3 ubiquitin-protein 99.9 4.8E-22 1E-26 231.9 15.7 173 513-718 203-375 (788)
14 PLN03210 Resistant to P. syrin 99.9 4.9E-21 1.1E-25 242.0 25.6 343 454-865 549-904 (1153)
15 PLN03210 Resistant to P. syrin 99.9 5.3E-21 1.2E-25 241.7 23.8 338 505-889 552-904 (1153)
16 PRK15387 E3 ubiquitin-protein 99.9 1.1E-21 2.3E-26 229.0 15.9 264 536-897 201-464 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 5.8E-20 1.3E-24 216.4 11.4 224 561-867 201-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.9E-24 213.3 12.5 247 560-892 179-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 5.8E-18 1.2E-22 186.4 6.0 59 116-174 2-64 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 6.8E-18 1.5E-22 185.9 5.4 60 141-200 2-63 (319)
21 KOG0617 Ras suppressor protein 99.7 1.4E-18 3.1E-23 157.3 -2.9 184 653-895 30-216 (264)
22 KOG0617 Ras suppressor protein 99.7 3.4E-18 7.4E-23 154.9 -2.6 183 631-873 32-218 (264)
23 PLN03150 hypothetical protein; 99.5 5.1E-14 1.1E-18 166.2 8.0 117 808-924 420-538 (623)
24 PLN03150 hypothetical protein; 99.5 3.1E-13 6.6E-18 159.6 13.1 132 30-178 368-507 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 2E-14 4.3E-19 154.3 -5.4 113 635-754 78-190 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.7E-18 148.2 -4.2 195 607-865 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.3 5.4E-12 1.2E-16 142.9 7.5 200 612-874 97-297 (394)
28 COG4886 Leucine-rich repeat (L 99.2 8.3E-12 1.8E-16 141.4 6.9 198 636-896 97-295 (394)
29 KOG1909 Ran GTPase-activating 99.1 1.1E-11 2.5E-16 126.3 1.7 255 106-373 24-311 (382)
30 KOG1909 Ran GTPase-activating 99.1 1.9E-11 4.2E-16 124.7 2.7 190 236-426 90-310 (382)
31 KOG3207 Beta-tubulin folding c 99.1 2.2E-11 4.8E-16 127.5 0.3 165 109-276 118-284 (505)
32 KOG3207 Beta-tubulin folding c 99.0 2.4E-11 5.3E-16 127.2 -0.5 214 157-373 117-339 (505)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.6E-14 104.4 4.8 84 263-349 42-126 (175)
34 KOG1259 Nischarin, modulator o 98.9 5.8E-10 1.3E-14 110.9 1.2 87 258-349 279-365 (490)
35 KOG1259 Nischarin, modulator o 98.9 5.4E-10 1.2E-14 111.1 0.9 129 238-374 284-413 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 3.8E-09 8.3E-14 101.9 6.3 84 260-344 61-148 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.8 2.8E-09 6.1E-14 128.6 6.2 104 215-320 546-651 (889)
38 PF08263 LRRNT_2: Leucine rich 98.8 8.2E-09 1.8E-13 74.5 4.3 39 33-71 2-43 (43)
39 KOG4658 Apoptotic ATPase [Sign 98.7 9.2E-09 2E-13 124.2 5.5 61 113-174 546-608 (889)
40 KOG2120 SCF ubiquitin ligase, 98.7 4.6E-10 1E-14 111.7 -5.8 160 113-274 186-349 (419)
41 KOG0531 Protein phosphatase 1, 98.7 1.8E-09 3.9E-14 122.4 -2.8 219 109-349 69-290 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 1.7E-08 3.8E-13 79.8 3.6 59 808-866 3-61 (61)
43 PF13855 LRR_8: Leucine rich r 98.6 2.9E-08 6.2E-13 78.6 4.0 61 830-890 1-61 (61)
44 KOG0531 Protein phosphatase 1, 98.6 6.6E-09 1.4E-13 117.8 -1.4 216 238-476 72-290 (414)
45 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-08 5E-13 99.9 -2.0 178 288-472 186-372 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.4 7.9E-08 1.7E-12 94.8 1.4 227 109-350 27-286 (388)
47 COG5238 RNA1 Ran GTPase-activa 98.4 9.2E-08 2E-12 94.4 1.8 169 235-403 89-285 (388)
48 KOG4579 Leucine-rich repeat (L 98.3 7.1E-08 1.5E-12 85.4 -2.4 62 809-873 80-141 (177)
49 KOG2982 Uncharacterized conser 98.2 3.6E-07 7.7E-12 91.5 0.1 112 162-275 46-158 (418)
50 KOG1859 Leucine-rich repeat pr 98.2 9.3E-08 2E-12 106.4 -4.9 109 233-348 182-291 (1096)
51 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.5E-11 87.0 3.2 210 361-575 46-265 (418)
52 KOG4579 Leucine-rich repeat (L 98.1 3.2E-07 6.9E-12 81.3 -2.0 102 634-740 29-134 (177)
53 KOG1859 Leucine-rich repeat pr 98.1 2.3E-07 5E-12 103.4 -4.4 180 187-375 83-294 (1096)
54 PRK15386 type III secretion pr 97.9 3E-05 6.4E-10 84.3 8.1 77 652-741 48-124 (426)
55 KOG4341 F-box protein containi 97.8 1.1E-06 2.4E-11 92.4 -4.3 38 133-170 160-199 (483)
56 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 57.2 2.9 35 832-867 3-37 (44)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.8E-10 57.2 2.5 38 806-844 1-38 (44)
58 PRK15386 type III secretion pr 97.5 0.00021 4.4E-09 77.9 7.9 138 108-274 48-188 (426)
59 KOG1644 U2-associated snRNP A' 97.5 0.00016 3.4E-09 69.3 5.5 87 112-203 42-128 (233)
60 KOG4341 F-box protein containi 97.5 1.6E-05 3.4E-10 84.0 -1.3 230 236-472 188-435 (483)
61 KOG3665 ZYG-1-like serine/thre 97.5 5.4E-05 1.2E-09 89.7 2.9 149 137-292 122-280 (699)
62 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 87.2 4.6 135 238-374 122-264 (699)
63 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.2E-09 67.5 6.1 108 263-372 42-152 (233)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 73.3 2.0 117 101-222 32-151 (260)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0027 5.9E-08 59.0 5.4 58 211-271 9-66 (129)
66 PF13306 LRR_5: Leucine rich r 96.7 0.0026 5.6E-08 59.1 5.2 124 231-362 5-128 (129)
67 KOG2123 Uncharacterized conser 96.6 0.00012 2.7E-09 73.1 -4.5 102 261-366 17-123 (388)
68 KOG2123 Uncharacterized conser 96.5 8.2E-05 1.8E-09 74.3 -6.5 85 110-201 17-101 (388)
69 KOG2739 Leucine-rich acidic nu 96.3 0.0013 2.9E-08 66.0 1.0 66 284-349 62-129 (260)
70 KOG1947 Leucine rich repeat pr 96.0 0.0016 3.4E-08 76.2 -0.5 127 211-347 240-373 (482)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0028 6.2E-08 37.9 0.8 10 834-843 4-13 (22)
72 PF00560 LRR_1: Leucine Rich R 95.9 0.004 8.7E-08 37.3 1.1 22 855-877 1-22 (22)
73 KOG1947 Leucine rich repeat pr 95.7 0.0043 9.2E-08 72.5 1.5 86 261-347 186-280 (482)
74 KOG4308 LRR-containing protein 94.8 0.00044 9.6E-09 78.5 -10.0 42 360-403 262-303 (478)
75 KOG4308 LRR-containing protein 93.9 0.0016 3.5E-08 74.0 -8.0 93 358-451 202-303 (478)
76 KOG0473 Leucine-rich repeat pr 92.1 0.012 2.6E-07 57.8 -3.7 84 805-891 41-124 (326)
77 PF13504 LRR_7: Leucine rich r 90.0 0.15 3.2E-06 28.2 0.9 12 808-819 3-14 (17)
78 PF13504 LRR_7: Leucine rich r 88.5 0.25 5.4E-06 27.4 1.0 11 682-692 3-13 (17)
79 smart00369 LRR_TYP Leucine-ric 87.8 0.5 1.1E-05 29.5 2.3 22 679-701 1-22 (26)
80 smart00370 LRR Leucine-rich re 87.8 0.5 1.1E-05 29.5 2.3 22 679-701 1-22 (26)
81 smart00369 LRR_TYP Leucine-ric 85.3 0.63 1.4E-05 29.0 1.7 14 854-867 2-15 (26)
82 smart00370 LRR Leucine-rich re 85.3 0.63 1.4E-05 29.0 1.7 14 854-867 2-15 (26)
83 PF13516 LRR_6: Leucine Rich r 84.3 0.25 5.4E-06 30.2 -0.4 12 808-819 4-15 (24)
84 PF13516 LRR_6: Leucine Rich r 83.2 0.44 9.6E-06 29.1 0.4 23 829-851 1-23 (24)
85 KOG3864 Uncharacterized conser 80.4 0.42 9.1E-06 46.5 -0.7 81 289-369 103-185 (221)
86 KOG0473 Leucine-rich repeat pr 79.8 0.04 8.6E-07 54.3 -7.8 89 232-324 36-124 (326)
87 KOG4242 Predicted myosin-I-bin 73.5 28 0.0006 38.8 10.4 34 336-369 354-389 (553)
88 KOG3864 Uncharacterized conser 73.4 0.48 1E-05 46.1 -2.4 81 240-321 103-186 (221)
89 smart00365 LRR_SD22 Leucine-ri 68.1 4.2 9.1E-05 25.5 1.7 14 854-867 2-15 (26)
90 smart00364 LRR_BAC Leucine-ric 66.2 3.7 8E-05 25.6 1.2 15 808-823 4-18 (26)
91 KOG4242 Predicted myosin-I-bin 65.4 35 0.00076 38.1 9.2 15 112-126 165-179 (553)
92 smart00368 LRR_RI Leucine rich 48.6 15 0.00033 23.3 2.0 18 361-378 3-20 (28)
93 KOG3763 mRNA export factor TAP 36.5 15 0.00032 41.8 0.7 39 109-147 215-254 (585)
94 KOG3763 mRNA export factor TAP 34.6 21 0.00046 40.6 1.6 64 212-278 216-285 (585)
95 smart00367 LRR_CC Leucine-rich 26.3 47 0.001 20.5 1.5 11 137-147 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-71 Score=703.27 Aligned_cols=584 Identities=35% Similarity=0.548 Sum_probs=396.1
Q ss_pred CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCC
Q 035852 32 VESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDF 111 (960)
Q Consensus 32 ~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l 111 (960)
.++|+.||++||+++.+|.+.+.+|....+||.|.||+|+. .++|+.|+|+++ .+.|.+++.+..+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~-------------~i~~~~~~~~~~l 92 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGK-------------NISGKISSAIFRL 92 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCC-------------CccccCChHHhCC
Confidence 56899999999999988888889997668999999999985 579999999886 6777777778888
Q ss_pred CCCCEEeCCCCCCCCCCCccccC-CCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCcc
Q 035852 112 EHLIYLNLSYNDFKGIQIPRFLG-SMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLL 190 (960)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L 190 (960)
++|++|+|++|.+.+. +|..+. .+++|++|+|++|++++.+|. +.+++|++|++++|
T Consensus 93 ~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n------------------- 150 (968)
T PLN00113 93 PYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNN------------------- 150 (968)
T ss_pred CCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCC-------------------
Confidence 8888888888887763 665544 777777777777777665553 23444444444433
Q ss_pred ceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEec
Q 035852 191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270 (960)
Q Consensus 191 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 270 (960)
.+.+..|..++++++|++|++++|.+. +.+|..++++++|++|++
T Consensus 151 ----------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 151 ----------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred ----------------------------------cccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeec
Confidence 333333334444444555555544444 344444444555555555
Q ss_pred cCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCc
Q 035852 271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW 350 (960)
Q Consensus 271 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~ 350 (960)
++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeec
Confidence 5555444445445555555555555555444444444444444444444444444444 334444444444444444443
Q ss_pred ccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCC
Q 035852 351 KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQV 430 (960)
Q Consensus 351 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 430 (960)
.+| ..+..+++|++|++++|.+.+.+
T Consensus 275 ~~p------------------------------------------------------~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 275 PIP------------------------------------------------------PSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred cCc------------------------------------------------------hhHhhccCcCEEECcCCeeccCC
Confidence 333 34444444444444444444444
Q ss_pred cccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccC
Q 035852 431 PWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ 510 (960)
Q Consensus 431 p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 510 (960)
|..+.++++|++|++++|.+.+.+|. .+..++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~----------------------------------------------- 332 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPV-ALTSLP----------------------------------------------- 332 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCCh-hHhcCC-----------------------------------------------
Confidence 44444455555555555544433322 111111
Q ss_pred ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccc
Q 035852 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKN 590 (960)
Q Consensus 511 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n 590 (960)
+|+.|++++|.+.+.+|.. +.
T Consensus 333 -~L~~L~L~~n~l~~~~p~~------------------------l~---------------------------------- 353 (968)
T PLN00113 333 -RLQVLQLWSNKFSGEIPKN------------------------LG---------------------------------- 353 (968)
T ss_pred -CCCEEECcCCCCcCcCChH------------------------Hh----------------------------------
Confidence 1111111111111111111 11
Q ss_pred cccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecc
Q 035852 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG 670 (960)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 670 (960)
.+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus 354 ---------------~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 354 ---------------KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred ---------------CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 12233344444444444555556666677777777777777777777777888888888888887
Q ss_pred cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc
Q 035852 671 TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750 (960)
Q Consensus 671 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 750 (960)
.+|..+.++++|+.|++++|++++.+|..+. .+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence 7887788888888888888888877777665 67888888888888888777665 358899999999999999998776
Q ss_pred ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR 830 (960)
Q Consensus 751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~ 830 (960)
+++.| +.|+|++|+++|.+|+.+++++
T Consensus 497 ~l~~L-----------------------------------------------------~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 497 SLSEL-----------------------------------------------------MQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred hhhcc-----------------------------------------------------CEEECcCCcceeeCChHHcCcc
Confidence 65544 8999999999999999999999
Q ss_pred ccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCC
Q 035852 831 ELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIG 910 (960)
Q Consensus 831 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~g 910 (960)
+|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|++++|+++|.||..++|.+|...+|.|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~ 603 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAG 603 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcc
Q 035852 911 DEYLCGPV 918 (960)
Q Consensus 911 n~~lcg~~ 918 (960)
|+++||.+
T Consensus 604 n~~lc~~~ 611 (968)
T PLN00113 604 NIDLCGGD 611 (968)
T ss_pred CccccCCc
Confidence 99999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-56 Score=561.01 Aligned_cols=515 Identities=33% Similarity=0.538 Sum_probs=397.7
Q ss_pred CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhc-CCCCCCEEeccCcccCCCCcccccCCCCCCEE
Q 035852 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 292 (960)
.+++.|+|++|.+++..+..+..+++|++|++++|.+. +.+|..+. .+++|++|++++|++++.+|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~-~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS-GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC-CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 46777888888777777777777777888888777776 45555443 777777777777777776664 456777777
Q ss_pred eCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372 (960)
Q Consensus 293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 372 (960)
++++|.+++.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+.+.+|..++.+++|
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L---------- 214 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL---------- 214 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc----------
Confidence 777777777777777777777777777777766666 566777777777777777766666666666555
Q ss_pred CCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCccccc
Q 035852 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452 (960)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 452 (960)
+.|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++.+
T Consensus 215 --------------------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 215 --------------------KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred --------------------cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 555555555556666666777777777777777766666666666666666666666655
Q ss_pred ccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHh
Q 035852 453 TVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFW 532 (960)
Q Consensus 453 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~ 532 (960)
.+|. .+..+++|+.|++++|.+.+.+|..+
T Consensus 275 ~~p~-------------------------------------------------~l~~l~~L~~L~Ls~n~l~~~~p~~~- 304 (968)
T PLN00113 275 PIPP-------------------------------------------------SIFSLQKLISLDLSDNSLSGEIPELV- 304 (968)
T ss_pred cCch-------------------------------------------------hHhhccCcCEEECcCCeeccCCChhH-
Confidence 4443 33334444555555554444444432
Q ss_pred hcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccE
Q 035852 533 KSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI 612 (960)
Q Consensus 533 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~ 612 (960)
..+++|++|++++|.+.+.+| . .+..++.|+.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~-----------------------~-------------------------~~~~l~~L~~ 336 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIP-----------------------V-------------------------ALTSLPRLQV 336 (968)
T ss_pred cCCCCCcEEECCCCccCCcCC-----------------------h-------------------------hHhcCCCCCE
Confidence 233444444444444433322 1 1122456667
Q ss_pred EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692 (960)
Q Consensus 613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (960)
|++++|.+++.+|..+..+++|+.|++++|++++.+|.++..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 77777777778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852 693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD 772 (960)
Q Consensus 693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~ 772 (960)
++.+|..+. .++.|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..++.
T Consensus 417 ~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--------------------- 474 (968)
T PLN00113 417 SGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--------------------- 474 (968)
T ss_pred eeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc---------------------
Confidence 999999887 7999999999999999999999999999999999999999888865421
Q ss_pred CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852 773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA 852 (960)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~ 852 (960)
++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|+.+++
T Consensus 475 ---------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 475 ---------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred ---------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 23589999999999999999999999999999999999999999999
Q ss_pred CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCcc
Q 035852 853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLC 915 (960)
Q Consensus 853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc 915 (960)
+++|+.|+|++|+++|.+|..++++++|+.|++++|+++|.+|.. ..+..+....+.+|+..+
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999986 334455555677887555
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=322.42 Aligned_cols=496 Identities=25% Similarity=0.381 Sum_probs=301.7
Q ss_pred CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 317 (960)
..|+.+.+++|.++ .+.+.+.++..|.+|++.+|++. ..|.+++.+..++.+++++|++.. +|+.++.+.+|+.++
T Consensus 45 v~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchh--hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhh
Confidence 34555555555553 33444555555555555555555 445555555555555555555553 344555555555555
Q ss_pred eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397 (960)
Q Consensus 318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 397 (960)
.++|.+. +++ ..++.+..|+.++..+|+++ ..|..+..+.+| ..+++
T Consensus 121 ~s~n~~~-el~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l------------------------------~~l~~ 167 (565)
T KOG0472|consen 121 CSSNELK-ELP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKL------------------------------SKLDL 167 (565)
T ss_pred cccccee-ecC-chHHHHhhhhhhhccccccc-cCchHHHHHHHH------------------------------HHhhc
Confidence 5555555 444 44555555555555555555 445555544444 33344
Q ss_pred CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc
Q 035852 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477 (960)
Q Consensus 398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~ 477 (960)
.+|++....|..+. ++.|+++|...|-+. .+|+.++.+.+|..|++..|++. .+| .|.++..|++++++.|.+..
T Consensus 168 ~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~~ 242 (565)
T KOG0472|consen 168 EGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIEM 242 (565)
T ss_pred cccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHHh
Confidence 44444422233232 566666666665554 55556666666666666666655 444 35555555555555555543
Q ss_pred cCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccc
Q 035852 478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTE 557 (960)
Q Consensus 478 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~ 557 (960)
.... ...+++++..||+.+|++ .+.|..+ ..+++|++||+|+|.+++..+.+++
T Consensus 243 lpae------------------------~~~~L~~l~vLDLRdNkl-ke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 243 LPAE------------------------HLKHLNSLLVLDLRDNKL-KEVPDEI-CLLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred hHHH------------------------Hhcccccceeeecccccc-ccCchHH-HHhhhhhhhcccCCccccCCccccc
Confidence 3222 223455555555555555 4556554 3467889999999999988888888
Q ss_pred cCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEec--ccccccCCCCCcccCCCccc
Q 035852 558 VSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL--EDNLLAGEIPDCWMNWRYLL 635 (960)
Q Consensus 558 l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L--s~n~l~~~~p~~l~~l~~L~ 635 (960)
+ .|+.|.+.+|++..+-.... ++ +...-|++|.= ..-.++.. +. .+-.
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii-------------~~----------gT~~vLKyLrs~~~~dglS~s--e~----~~e~ 346 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREII-------------SK----------GTQEVLKYLRSKIKDDGLSQS--EG----GTET 346 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHH-------------cc----------cHHHHHHHHHHhhccCCCCCC--cc----cccc
Confidence 8 68888888887652211100 00 00011111110 00011000 00 0000
Q ss_pred EEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCC---CcEEecCCCcccccCchHHhhcCcccceeee
Q 035852 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE---LETIDIGENEFSGNVPAWIGERFPRMIILIL 712 (960)
Q Consensus 636 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L 712 (960)
.- ....+..| ......+.+.|++++-+++ .+|+....... .+..+++.|++. .+|..+. .+..+.+.-+
T Consensus 347 ~~----t~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~ 418 (565)
T KOG0472|consen 347 AM----TLPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLV 418 (565)
T ss_pred cC----CCCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHH
Confidence 00 00111122 2234567888888888887 66765544444 778899999998 7888776 3555554444
Q ss_pred ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852 713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI 792 (960)
Q Consensus 713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (960)
..|+..+-+|..++.++.|..|++++|.+. .+|.+++.+..
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~-------------------------------------- 459 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR-------------------------------------- 459 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhh--------------------------------------
Confidence 444444478888999999999999988775 67777665443
Q ss_pred EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852 793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK 872 (960)
Q Consensus 793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 872 (960)
|+.||+|+|+|. .+|+.+..+..++.+-.++|++...-|+.+++|.+|..|||.+|.+. .||.
T Consensus 460 ---------------Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp 522 (565)
T KOG0472|consen 460 ---------------LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP 522 (565)
T ss_pred ---------------hheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCCh
Confidence 488999999998 89999998888888888889987655555999999999999999998 8999
Q ss_pred CCCCCCCCCEEEcccCcceecCCCC
Q 035852 873 NTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 873 ~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
.++++++|++|++++|++. .|..
T Consensus 523 ~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred hhccccceeEEEecCCccC--CCHH
Confidence 9999999999999999987 6653
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.6e-38 Score=322.30 Aligned_cols=472 Identities=24% Similarity=0.375 Sum_probs=288.7
Q ss_pred CccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCC
Q 035852 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSR 312 (960)
Q Consensus 233 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 312 (960)
.+.++..|.+|++.+|++. ..|++++.+..++.++.+.|++. .+|+.++.+.+|+++++++|.+... |+.++.+-.
T Consensus 63 dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~ 138 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLD 138 (565)
T ss_pred hhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeec-CchHHHHhh
Confidence 3445555555555555553 35555555556666666666655 5555566666666666666665543 444555666
Q ss_pred CCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcc
Q 035852 313 LEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVL 392 (960)
Q Consensus 313 L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 392 (960)
|+.++..+|+++ ..| ..+.++.+|..+++.+|++.. .|+..-.++.|++++
T Consensus 139 l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld-------------------------- 189 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLD-------------------------- 189 (565)
T ss_pred hhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcc--------------------------
Confidence 666666666665 444 445555666666666666552 333322344443333
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC
Q 035852 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR 472 (960)
Q Consensus 393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~ 472 (960)
...|.++ .+|..++.+.+|..|++.+|++. .+| .|..|..|+++++..|.+. .+|.....+++++..||+.+
T Consensus 190 ----~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 190 ----CNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred ----cchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence 2233222 45556666666666666666665 445 5666666666666666655 55555555666666666666
Q ss_pred ccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852 473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552 (960)
Q Consensus 473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 552 (960)
|+++ .+|..+.-+.+|.+||+++|.+++- |..+ +++ .|+.|-+.+|.+...=
T Consensus 262 Nklk-------------------------e~Pde~clLrsL~rLDlSNN~is~L-p~sL-gnl-hL~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 262 NKLK-------------------------EVPDEICLLRSLERLDLSNNDISSL-PYSL-GNL-HLKFLALEGNPLRTIR 313 (565)
T ss_pred cccc-------------------------cCchHHHHhhhhhhhcccCCccccC-Cccc-ccc-eeeehhhcCCchHHHH
Confidence 6554 3444555566666666666666433 3332 345 7888999999875321
Q ss_pred CCcccc---CCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852 553 PNLTEV---SQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM 629 (960)
Q Consensus 553 ~~l~~l---~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 629 (960)
..+-.. .-|++|.= .+...-+ +.. .| ..-..-+. ..+..| ...
T Consensus 314 r~ii~~gT~~vLKyLrs---~~~~dgl-----------S~s--e~-------------~~e~~~t~----~~~~~~-~~~ 359 (565)
T KOG0472|consen 314 REIISKGTQEVLKYLRS---KIKDDGL-----------SQS--EG-------------GTETAMTL----PSESFP-DIY 359 (565)
T ss_pred HHHHcccHHHHHHHHHH---hhccCCC-----------CCC--cc-------------cccccCCC----CCCccc-chh
Confidence 111111 00111110 0000000 000 00 00000000 001111 223
Q ss_pred CCCcccEEECCCCccccCCCcCcCCCCC---CcEEECCCCeecccCCcCCcCCCCCcE-EecCCCcccccCchHHhhcCc
Q 035852 630 NWRYLLVLRLDNNKFTGKLPTSLGALSL---LRSLHLRNNNLSGTLPVSLGNCTELET-IDIGENEFSGNVPAWIGERFP 705 (960)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~l~~l~~L~~-L~Ls~N~l~g~ip~~~~~~l~ 705 (960)
...+.+.|+++.-+++ .+|........ ....+++.|++. .+|..+..+..+.+ +++++|+++ .+|..+. .++
T Consensus 360 ~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~ 435 (565)
T KOG0472|consen 360 AIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQ 435 (565)
T ss_pred hhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhh
Confidence 3456788888888887 66765544333 788899999998 78888777776655 456666664 7887776 699
Q ss_pred ccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccc
Q 035852 706 RMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQ 785 (960)
Q Consensus 706 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (960)
+|..|+|++|.+. .+|.+++.+..|+.||++.|+|. .+|.++..+..+
T Consensus 436 kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l------------------------------ 483 (565)
T KOG0472|consen 436 KLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL------------------------------ 483 (565)
T ss_pred cceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH------------------------------
Confidence 9999999999887 78999999999999999999986 778777655444
Q ss_pred cccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCc
Q 035852 786 FVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNR 865 (960)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 865 (960)
+.+-.++|++...-|..++++.+|+.|||.+|.+. .||+.+|+|++|+.|++++|.
T Consensus 484 -----------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 484 -----------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -----------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 44445668887555555999999999999999997 789999999999999999999
Q ss_pred cc
Q 035852 866 LE 867 (960)
Q Consensus 866 l~ 867 (960)
++
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 98
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-35 Score=311.60 Aligned_cols=250 Identities=26% Similarity=0.359 Sum_probs=157.4
Q ss_pred CcEEeCCCCCCCCChhHHhhcCC--CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852 240 LVTLDLSHNQFDNSLIATQLYGL--CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317 (960)
Q Consensus 240 L~~L~Ls~n~l~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 317 (960)
-+.||.+++.+. ...-..+.+. ..-+.|++++|++...-+..|.++++|+.+++.+|.++. +|...+...+|+.|+
T Consensus 54 ~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEe
Confidence 345677776664 1111111111 123345666665555555555555555555555555543 344333334455555
Q ss_pred eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397 (960)
Q Consensus 318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 397 (960)
|.+|.++ .+..+.+..++.|+.||||.|.++..--..|..-.+ +++|+|
T Consensus 132 L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n------------------------------i~~L~L 180 (873)
T KOG4194|consen 132 LRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN------------------------------IKKLNL 180 (873)
T ss_pred eeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC------------------------------ceEEee
Confidence 5555555 344355555555555555555554222223333233 466666
Q ss_pred CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc
Q 035852 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL 477 (960)
Q Consensus 398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~ 477 (960)
++|.++..-...|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+..
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCccc
Confidence 667666555666777888888889988888666677777888888888888876 4545578888888888888888888
Q ss_pred cCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCC
Q 035852 478 KANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGI 523 (960)
Q Consensus 478 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~ 523 (960)
..+..|..+.++++|+++.|++...-..|+.+++.|+.|+++.|.+
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 8888888888888888888887766666666666666666555555
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-34 Score=307.05 Aligned_cols=369 Identities=22% Similarity=0.251 Sum_probs=278.6
Q ss_pred cccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeec
Q 035852 391 VLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYA 470 (960)
Q Consensus 391 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l 470 (960)
.-+.|++++|++...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.+. .+....++.++.|+.||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 3478999999999888999999999999999999998 78866666677999999999998 566668999999999999
Q ss_pred cCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc
Q 035852 471 SRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG 550 (960)
Q Consensus 471 ~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 550 (960)
+.|.|+.+..+.|..-.++++|++++|.++..-...|..+.+|..|.++.|++ ..+|...|+.+++|+.|+|..|++.-
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceee
Confidence 99999999999999889999999999999988888899999999999999988 56777778888888888888887763
Q ss_pred c-CCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852 551 E-IPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM 629 (960)
Q Consensus 551 ~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 629 (960)
. .-.+..+ ++|+.+.+..|.++..-...|-
T Consensus 236 ve~ltFqgL-------------------------------------------------~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 236 VEGLTFQGL-------------------------------------------------PSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ehhhhhcCc-------------------------------------------------hhhhhhhhhhcCcccccCccee
Confidence 2 1133344 4444444444544444445566
Q ss_pred CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII 709 (960)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~ 709 (960)
.+.++++|+|..|++...--.++.+++.|+.|++++|.|...-++++.-+++|++|||++|+++ .+++.-+..+..|++
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEE 345 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhh
Confidence 6777777777777777666667777777777777777777777777777777777777777777 444444446777777
Q ss_pred eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789 (960)
Q Consensus 710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (960)
|+|++|++...-...|..+++|+.|||++|.+++.|.+.-.-
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~-------------------------------------- 387 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA-------------------------------------- 387 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh--------------------------------------
Confidence 777777777555566777778888888888777555442111
Q ss_pred eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcC
Q 035852 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSS 863 (960)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 863 (960)
| ..+++|+.|+|-+|++...--..|..+.+|+.|||.+|.+...-|+.|..| .|+.|-++.
T Consensus 388 -----------f-~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 388 -----------F-NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred -----------h-ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 1 124556778888888874334567778888888888888877777777777 677665544
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=8.2e-35 Score=324.90 Aligned_cols=244 Identities=26% Similarity=0.385 Sum_probs=197.3
Q ss_pred CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCC
Q 035852 579 ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLL 658 (960)
Q Consensus 579 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 658 (960)
+.+++++++++|++++ +| .++..|.+++.+...+|+++ .+|..+...++|+.|.+..|.+. .+|....++++|
T Consensus 240 p~nl~~~dis~n~l~~-lp----~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN-LP----EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred cccceeeecchhhhhc-ch----HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 4566777777777665 22 34555899999999999995 67888888899999999999998 778888889999
Q ss_pred cEEECCCCeecccCCcCC-cCCC-CCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEee
Q 035852 659 RSLHLRNNNLSGTLPVSL-GNCT-ELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVL 736 (960)
Q Consensus 659 ~~L~L~~N~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 736 (960)
++|+|..|++. .+|+.+ .-.. +|+.|+.+.|++. ..|..-.+.++.|+.|++.+|.++...-+.+.+++.|++|+|
T Consensus 313 ~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 313 RTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHL 390 (1081)
T ss_pred eeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeee
Confidence 99999999998 666643 3333 3788889999988 666544456889999999999999888888999999999999
Q ss_pred cCCcCccccCc-cccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852 737 AGNNLSGTIPT-CISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815 (960)
Q Consensus 737 s~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 815 (960)
++|++. ++|. ++.++ ..|++|+||+
T Consensus 391 syNrL~-~fpas~~~kl-----------------------------------------------------e~LeeL~LSG 416 (1081)
T KOG0618|consen 391 SYNRLN-SFPASKLRKL-----------------------------------------------------EELEELNLSG 416 (1081)
T ss_pred cccccc-cCCHHHHhch-----------------------------------------------------HHhHHHhccc
Confidence 999986 5554 33333 3358999999
Q ss_pred CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccccc-CCCCCCCCCCCCEEEcccCc
Q 035852 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGE-IPKNTVNLVFLSHFNISYNN 889 (960)
Q Consensus 816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~l~ls~N~ 889 (960)
|+|+ .+|.++.+++.|++|..-+|++. ..| ++.++++|+.+|+|.|+|+-. +|...-. +.|++||+++|.
T Consensus 417 NkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 417 NKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred chhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 9999 89999999999999999999998 677 799999999999999999853 4544332 789999999995
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=6.5e-34 Score=317.78 Aligned_cols=496 Identities=26% Similarity=0.308 Sum_probs=264.9
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182 (960)
Q Consensus 103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~ 182 (960)
.||..+..-.++..|+++.|.+.... -+++.+.-+|+.||+++|++. ..|..+..+.+|+.|+++.|.|.
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-------- 81 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-------- 81 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh--------
Confidence 34545555555555555555544321 223333334555555555533 34445555555555555555443
Q ss_pred cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262 (960)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 262 (960)
.. +....++.+|+++.|..|.+...+ ..+..+++|++||+++|.+ +.+|..+..+
T Consensus 82 -------------------~v---p~s~~~~~~l~~lnL~~n~l~~lP-~~~~~lknl~~LdlS~N~f--~~~Pl~i~~l 136 (1081)
T KOG0618|consen 82 -------------------SV---PSSCSNMRNLQYLNLKNNRLQSLP-ASISELKNLQYLDLSFNHF--GPIPLVIEVL 136 (1081)
T ss_pred -------------------hC---chhhhhhhcchhheeccchhhcCc-hhHHhhhcccccccchhcc--CCCchhHHhh
Confidence 32 355666777788888777766543 4677777888888888877 3567777777
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 342 (960)
..++.+..++|..... ++... ++++++..|.+.+.++..+..++. .|+|++|.+. . ..+.++++|+.|.
T Consensus 137 t~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~ 205 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLH 205 (1081)
T ss_pred hHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhh
Confidence 7777777777732212 22222 777777777777777666666655 6777777765 2 3466777777777
Q ss_pred CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecC
Q 035852 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422 (960)
Q Consensus 343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 422 (960)
...|++.... -.-++|+.|+.+.|.++...... .+.+|+.++++.|+++ .+|++++.+.+|+.++..
T Consensus 206 c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~p--------~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 206 CERNQLSELE----ISGPSLTALYADHNPLTTLDVHP--------VPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhcccceEE----ecCcchheeeeccCcceeecccc--------ccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence 7777665221 12356666666666555222111 1233555555555555 344555555555555555
Q ss_pred CCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCC
Q 035852 423 ENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPP 502 (960)
Q Consensus 423 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~ 502 (960)
+|+++ .+|..+...++|++|.+..|.+. .+|. ....++.
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~-~le~~~s-------------------------------------- 311 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP-FLEGLKS-------------------------------------- 311 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC-cccccce--------------------------------------
Confidence 55553 44555555555555555555544 2222 2222333
Q ss_pred CCcccccCccCcEEeccCCCCcCCCchhHhhcCCc-ccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCCCc
Q 035852 503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQ-FNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLAS 580 (960)
Q Consensus 503 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 580 (960)
|+.|++..|++ ..+|+.++..... ++.|+.+.|++..... .-.. .+
T Consensus 312 ----------L~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~---------------------~~ 359 (1081)
T KOG0618|consen 312 ----------LRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN---------------------HA 359 (1081)
T ss_pred ----------eeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchh---------------------hH
Confidence 33333333333 2233333222222 4444444444332110 0111 22
Q ss_pred cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcE
Q 035852 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRS 660 (960)
Q Consensus 581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 660 (960)
.|+.|.+.+|.++... ...+.+...|+.|+|++|++.......+.++..|++|+||+|+++ .+|..+..+..|++
T Consensus 360 ~Lq~LylanN~Ltd~c----~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSC----FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred HHHHHHHhcCcccccc----hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 3333444444443321 122334556666666666665444445666666777777777766 56666666677777
Q ss_pred EECCCCeecccCCcCCcCCCCCcEEecCCCcccc-cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCC
Q 035852 661 LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG-NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN 739 (960)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 739 (960)
|...+|++. .+| .+..+++|+.+|+|.|+++- .+|... .-++|++||+++|.=.-..-..+..++.+...++.-|
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~--p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL--PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC--CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 777777666 566 56666777777777776652 223222 1256777777766532222233444455555555444
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.8e-33 Score=294.44 Aligned_cols=358 Identities=28% Similarity=0.416 Sum_probs=230.1
Q ss_pred chhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCc
Q 035852 405 SLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWV 484 (960)
Q Consensus 405 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 484 (960)
.+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+..|++.....+..+..+..|+.|++++|+++
T Consensus 46 ~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-------- 116 (1255)
T KOG0444|consen 46 QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-------- 116 (1255)
T ss_pred hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh--------
Confidence 34555555555555555555554 333344555555555555555432211113334444444444444443
Q ss_pred ccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeE
Q 035852 485 PVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTL 564 (960)
Q Consensus 485 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 564 (960)
..|..+....++..|++++|++ +.||..++.+++.|-+||||+|++...+|.+..+..|++|
T Consensus 117 -----------------EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 117 -----------------EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTL 178 (1255)
T ss_pred -----------------hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhh
Confidence 3455566677777788888877 6788888888899999999999998777777777778888
Q ss_pred EcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCcc
Q 035852 565 DLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKF 644 (960)
Q Consensus 565 ~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 644 (960)
+|++|++.- +... .+..+++|++|.+++.+-
T Consensus 179 ~Ls~NPL~h-------------------------fQLr------------------------QLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 179 KLSNNPLNH-------------------------FQLR------------------------QLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred hcCCChhhH-------------------------HHHh------------------------cCccchhhhhhhcccccc
Confidence 888776541 0001 112234455555554433
Q ss_pred c-cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCch
Q 035852 645 T-GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL 723 (960)
Q Consensus 645 ~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~ 723 (960)
+ .-+|.++..+.+|+.+|++.|.+. .+|+++.++.+|+.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchH
Confidence 2 235555666666666666666665 55666666666666666666665 3443333 3456677777777776 6677
Q ss_pred hhcCCCCCCeEeecCCcCc-cccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhh
Q 035852 724 ELCHLAFLKILVLAGNNLS-GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFK 802 (960)
Q Consensus 724 ~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (960)
.++.++.|+.|.+.+|+++ .-||..|+.+.+|
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L----------------------------------------------- 318 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL----------------------------------------------- 318 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhh-----------------------------------------------
Confidence 7777777777777777765 2477777776665
Q ss_pred hhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCE
Q 035852 803 AVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSH 882 (960)
Q Consensus 803 ~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 882 (960)
+.+..++|.+. ..|+.+..+..|+.|.|++|++- .+|+.|.-|+.|+.|||..|.----.|.--..-++|+.
T Consensus 319 ------evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lef 390 (1255)
T KOG0444|consen 319 ------EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEF 390 (1255)
T ss_pred ------HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhccee
Confidence 56667788877 89999999999999999999987 68999999999999999999644233332222367776
Q ss_pred EEcccC-----cceecCCCC
Q 035852 883 FNISYN-----NLSGEVPDE 897 (960)
Q Consensus 883 l~ls~N-----~l~g~iP~~ 897 (960)
-|+-+- +|-|..|.+
T Consensus 391 YNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 391 YNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred eecceehhhHHhhccCCccc
Confidence 665542 577776653
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.6e-32 Score=292.12 Aligned_cols=371 Identities=28% Similarity=0.404 Sum_probs=227.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS 188 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~ 188 (960)
+-++..|-.|+++|.|+|..+|..+..+++++.|.|...++. .+|..++.|.+|++|.+++|++..+.. .++.+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG----ELs~L- 77 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG----ELSDL- 77 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh----hhccc-
Confidence 456678888999999998789999999999999999988854 689999999999999998887654321 12222
Q ss_pred ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268 (960)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 268 (960)
+.|+.+++..|++....+|..+..+..|+.|
T Consensus 78 -------------------------------------------------p~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 78 -------------------------------------------------PRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred -------------------------------------------------hhhHHHhhhccccccCCCCchhcccccceee
Confidence 3333333333333323344444444444444
Q ss_pred eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348 (960)
Q Consensus 269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l 348 (960)
||+.|++. +.|..+..-+++-+|+||+|+|..+....|.+++.|-.|||++|++. .+| .....+..|++|+|++|.+
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LP-PQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLP-PQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcC-HHHHHHhhhhhhhcCCChh
Confidence 44444444 34444444444444444444444433333344444444444444443 333 3344444445555555444
Q ss_pred CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC
Q 035852 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428 (960)
Q Consensus 349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 428 (960)
...--..+..+++|+.|.+++.+-+ ...+|.++..+.+|..+|++.|.+.
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRT-----------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRT-----------------------------LDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccch-----------------------------hhcCCCchhhhhhhhhccccccCCC-
Confidence 3221111222223322222222111 0134445555556666666666655
Q ss_pred CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccc
Q 035852 429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508 (960)
Q Consensus 429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 508 (960)
.+|+.+.++++|+.|+|++|+++. +..
T Consensus 236 ~vPecly~l~~LrrLNLS~N~ite-L~~---------------------------------------------------- 262 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITE-LNM---------------------------------------------------- 262 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceee-eec----------------------------------------------------
Confidence 556566556666666665555441 000
Q ss_pred cCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcc
Q 035852 509 SQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLS 588 (960)
Q Consensus 509 ~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls 588 (960)
. . .. +
T Consensus 263 -----------------~--~---~~--------------------------------------------W--------- 267 (1255)
T KOG0444|consen 263 -----------------T--E---GE--------------------------------------------W--------- 267 (1255)
T ss_pred -----------------c--H---HH--------------------------------------------H---------
Confidence 0 0 00 0
Q ss_pred cccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCcccc-CCCcCcCCCCCCcEEECCCCe
Q 035852 589 KNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG-KLPTSLGALSLLRSLHLRNNN 667 (960)
Q Consensus 589 ~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~ 667 (960)
..++.|++|.|+++ .+|++++.++.|+.|.+.+|+++- -+|..++.+.+|+.+..++|+
T Consensus 268 -------------------~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 268 -------------------ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred -------------------hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 12222333333333 578888899999999999999873 489999999999999999999
Q ss_pred ecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc
Q 035852 668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH 718 (960)
Q Consensus 668 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~ 718 (960)
+. ..|+++..|..|+.|.|++|++. .+|+.+. -++.|+.|+++.|.--
T Consensus 328 LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 328 LE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL 375 (1255)
T ss_pred cc-cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence 97 89999999999999999999998 8999987 7999999999999755
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-25 Score=225.95 Aligned_cols=301 Identities=22% Similarity=0.227 Sum_probs=174.2
Q ss_pred CCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC-ccccccCCCCCcccccceEEe
Q 035852 415 VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR-NSLTLKANPNWVPVFQLEELD 493 (960)
Q Consensus 415 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~ 493 (960)
.-++++|..|+|+...|.+|+.+++|+.|||++|.|+ .|.+.+|.++++|..|-+.+ |+|+......|..+..++.|.
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4455666666666555556666666666666666665 34444666666665555554 666666666666666666666
Q ss_pred cccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcC
Q 035852 494 LRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSG 573 (960)
Q Consensus 494 l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~ 573 (960)
+.-|.+.......+..++++..|.+.+|.+ ..++...+..+..++.+++..|.+... .+++.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icd----CnL~wla~---------- 211 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICD----CNLPWLAD---------- 211 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccc----cccchhhh----------
Confidence 655555555555555555555555555554 334444444455555555555543210 11110000
Q ss_pred CCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCC-CcccEEECCCCccccCCCc-C
Q 035852 574 QLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNW-RYLLVLRLDNNKFTGKLPT-S 651 (960)
Q Consensus 574 ~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~-~ 651 (960)
++..+. .++++.+...-..+.++++..+-+..|... .++..-..+.+...+..|. .
T Consensus 212 ------------~~a~~~----------ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c 269 (498)
T KOG4237|consen 212 ------------DLAMNP----------IETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC 269 (498)
T ss_pred ------------HHhhch----------hhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH
Confidence 000000 011112222222233333332222222211 1222112233333334443 5
Q ss_pred cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCC
Q 035852 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731 (960)
Q Consensus 652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 731 (960)
|..+++|++|+|++|++++.-+.+|..+..+++|.|..|++. .+...++.++..|+.|+|.+|+|+...|..|..+.+|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 788888888888888888888888888888888888888887 6777777788889999999999988888888888889
Q ss_pred CeEeecCCcCccccCccccccccchhcc
Q 035852 732 KILVLAGNNLSGTIPTCISNFTAMATFL 759 (960)
Q Consensus 732 ~~L~Ls~N~l~g~ip~~~~~l~~l~~~~ 759 (960)
..|.+-.|++. |-..+.++..|.
T Consensus 349 ~~l~l~~Np~~-----CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 349 STLNLLSNPFN-----CNCRLAWLGEWL 371 (498)
T ss_pred eeeehccCccc-----CccchHHHHHHH
Confidence 99998888874 344445554443
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=4.6e-25 Score=224.84 Aligned_cols=278 Identities=24% Similarity=0.267 Sum_probs=209.7
Q ss_pred CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccC-cccCCCCcccccCCCCCCEE
Q 035852 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD-NNFQGPIPDTIQNWTSLRHL 292 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L 292 (960)
+.-..++|..|+|+.+++.+|..+++||.|||++|.|+ .+.|+.|.++++|..|.+.+ |+|+...-..|+++..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 35678999999999999999999999999999999999 88999999999999888877 88986666789999999999
Q ss_pred eCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC------------cccccccccCC
Q 035852 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE------------WKIPRSFSRFC 360 (960)
Q Consensus 293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~------------~~~p~~l~~l~ 360 (960)
.+.-|++.....+.|..+++|..|.+.+|.+. .++...+..+..++.+.+..|.+. ...|..++...
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 99999999998999999999999999999997 676567889999999999888732 12233344444
Q ss_pred CCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchh-hhhcCCCCCCEEecCCCcCCCCCcccccCCCC
Q 035852 361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKLSS 439 (960)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 439 (960)
......+.+.++.......+..... .+.+--.+.+...+..| ..|..+++|++|++++|+++++-+.+|.....
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~e-----sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLE-----SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHH-----hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 4444445555555444443332210 01111112222333333 34777888888888888888777778888888
Q ss_pred CcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccC
Q 035852 440 LRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYL 499 (960)
Q Consensus 440 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l 499 (960)
++.|.|..|++. .+....|.++..|+.|++++|+|+...+.+|....+|.+|.+-.|.+
T Consensus 300 l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 300 LQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 888888888876 56666788888888888888888887777777777777777766654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=4.8e-22 Score=231.89 Aligned_cols=173 Identities=24% Similarity=0.389 Sum_probs=77.1
Q ss_pred CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccc
Q 035852 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKL 592 (960)
Q Consensus 513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l 592 (960)
-..|+++++++. .+|..+. ++|+.|++++|+++. +|.. +++|++|++++|+++. +|..+++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence 344555555553 4454432 245556666665553 2321 3455666666665553 344445555555555554
Q ss_pred cccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccC
Q 035852 593 SGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTL 672 (960)
Q Consensus 593 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 672 (960)
.. +|.. ...|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+
T Consensus 275 ~~-Lp~l-------p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 275 TH-LPAL-------PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred hh-hhhc-------hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 42 1110 1234444555554442 2221 2345555555555542 2321 123444455555544 23
Q ss_pred CcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc
Q 035852 673 PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH 718 (960)
Q Consensus 673 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~ 718 (960)
|.. ..+|++|+|++|+++ .+|.. .++|+.|++++|+++
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT 375 (788)
T ss_pred ccc---ccccceEecCCCccC-CCCCC----Ccccceehhhccccc
Confidence 321 124445555555554 23321 233444444444444
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.9e-21 Score=242.03 Aligned_cols=343 Identities=20% Similarity=0.217 Sum_probs=167.6
Q ss_pred cchhhhcCCCCCcEeeccCcccc------ccCCCCCccc-ccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCC
Q 035852 454 VSEIHFANLSSLTFFYASRNSLT------LKANPNWVPV-FQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526 (960)
Q Consensus 454 i~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~ 526 (960)
+....|.++++|+.|.+..+... ...+..+..+ .+|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 33446777888888887655321 1122223322 34666666665543 334333 3456666666666543 2
Q ss_pred CchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCC
Q 035852 527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNG 606 (960)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 606 (960)
++..+ ..+++|+.|+++++.....+|.+..+++|+.|++++|.....+|.. +..
T Consensus 626 L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-------------------------i~~ 679 (1153)
T PLN03210 626 LWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-------------------------IQY 679 (1153)
T ss_pred ccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-------------------------hhc
Confidence 33322 3455666666665554455555555555666666555544444432 223
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|+.|+
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELI 753 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccc
Confidence 4444444444443333444333 3445555555555443333322 234455555555543 344333 344444444
Q ss_pred cCCCccc---c---cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccC
Q 035852 687 IGENEFS---G---NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLG 760 (960)
Q Consensus 687 Ls~N~l~---g---~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~ 760 (960)
+.++... + .++.......++|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+ ++++|+.+..
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 4442211 0 0111111123455555555555555555555555555555555554444444433 2333322111
Q ss_pred CCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcc
Q 035852 761 SDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHN 840 (960)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 840 (960)
+++.... .+ ....++++.|+|++|.++ .+|.+++.+++|+.|+|++|
T Consensus 833 s~c~~L~------~~--------------------------p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 833 SGCSRLR------TF--------------------------PDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCccc------cc--------------------------cccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 1100000 00 001133567777777776 67777777777777777764
Q ss_pred cCcccCchhhccCCCCCEEECcCCc
Q 035852 841 FFSGRIPENIGAMALLESLDFSSNR 865 (960)
Q Consensus 841 ~l~g~iP~~l~~l~~L~~L~Ls~N~ 865 (960)
+--..+|..+..++.|+.|++++|.
T Consensus 880 ~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcCccCcccccccCCCeeecCCCc
Confidence 3333466667777777777777764
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=5.3e-21 Score=241.69 Aligned_cols=338 Identities=19% Similarity=0.180 Sum_probs=250.0
Q ss_pred cccccCccCcEEeccCCC------CcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCC--
Q 035852 505 SWLHSQNHLVNLDISDSG------IVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP-- 576 (960)
Q Consensus 505 ~~~~~~~~L~~L~Ls~n~------~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-- 576 (960)
..|..+++|+.|.+..+. ....+|..+....++|+.|++.++.+...+..+ ...+|+.|++++|.+.....
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~ 630 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV 630 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc
Confidence 445666677777665442 222345544433456777777777765433333 45677888888877653221
Q ss_pred CCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC
Q 035852 577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS 656 (960)
Q Consensus 577 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 656 (960)
..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 1256788888887765555552 4567899999999998888899999999999999999987777888776 789
Q ss_pred CCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccc-------cccCchhhcCCC
Q 035852 657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKF-------HGVFPLELCHLA 729 (960)
Q Consensus 657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l-------~~~~p~~l~~l~ 729 (960)
+|+.|++++|...+.+|.. .++|++|++++|.+. .+|..+ .+++|+.|.+.++.. ....|......+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhccccccccchhhhhccc
Confidence 9999999999877777754 467999999999987 788776 488999999887432 112222334467
Q ss_pred CCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhcccc
Q 035852 730 FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLT 809 (960)
Q Consensus 730 ~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 809 (960)
+|+.|++++|+..+.+|..+++++.|+.+...++......|. ...+++|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------------------------------~~~L~sL~ 828 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------------------------------GINLESLE 828 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------------------------------CCCccccC
Confidence 899999999999999999999999987765433211110000 01356789
Q ss_pred EEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCc
Q 035852 810 NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNN 889 (960)
Q Consensus 810 ~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~ 889 (960)
.|+|++|.....+|.. .++|+.|+|++|.++ .+|.+++.+++|+.|+|++|+--..+|..+.+++.|+.++++++.
T Consensus 829 ~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999998766677753 367899999999998 689999999999999999965445689999999999999999884
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.1e-21 Score=228.95 Aligned_cols=264 Identities=23% Similarity=0.279 Sum_probs=192.6
Q ss_pred CcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEec
Q 035852 536 TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINL 615 (960)
Q Consensus 536 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L 615 (960)
..-..|++++|.++..++.+. ++|+.|++++|+++. +|..+++|++|++++|+++. +|.. .+.|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeec
Confidence 345678999998885333443 468899999998885 67777888888888888874 3421 356778888
Q ss_pred ccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccccc
Q 035852 616 EDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695 (960)
Q Consensus 616 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 695 (960)
++|.++. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|++++ +|... .+|+.|++++|+++ .
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~-~ 336 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT-S 336 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccc-c
Confidence 8887763 4432 246777888888887 45542 3678888888888874 45422 35677788888887 4
Q ss_pred CchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCC
Q 035852 696 VPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF 775 (960)
Q Consensus 696 ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 775 (960)
+|. ..++|+.|++++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 337 LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~-------------------------- 381 (788)
T PRK15387 337 LPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP-------------------------- 381 (788)
T ss_pred ccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc--------------------------
Confidence 664 13467888888888874 4432 3567777888887763 45321
Q ss_pred CCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCC
Q 035852 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL 855 (960)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 855 (960)
..|+.|++++|+|+ .+|... +.|+.|++|+|++++ +|... .+
T Consensus 382 ------------------------------~~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~ 423 (788)
T PRK15387 382 ------------------------------SGLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLTS-LPMLP---SG 423 (788)
T ss_pred ------------------------------cccceEEecCCccc-CCCCcc---cCCCEEEccCCcCCC-CCcch---hh
Confidence 23478999999999 577543 578999999999985 78643 46
Q ss_pred CCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 856 LESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 856 L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
|+.|++++|+++ .||..+.+++.|+.+++++|+|+|.+|..
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 788999999998 79999999999999999999999998864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=5.8e-20 Score=216.36 Aligned_cols=224 Identities=25% Similarity=0.381 Sum_probs=128.4
Q ss_pred CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852 561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640 (960)
Q Consensus 561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 640 (960)
++.|++++|+++...+..+.+|+.|++++|+++. +|..+ ...|+.|++++|++. .+|..+. ++|+.|+++
T Consensus 201 L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts-LP~~l------~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 201 ITTLILDNNELKSLPENLQGNIKTLYANSNQLTS-IPATL------PDTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CcEEEecCCCCCcCChhhccCCCEEECCCCcccc-CChhh------hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4444444444443222223445555555555442 22211 124556666666655 4454443 356777777
Q ss_pred CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc
Q 035852 641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV 720 (960)
Q Consensus 641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~ 720 (960)
+|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS- 339 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-
Confidence 77776 4565543 46777777777776 3554432 35677777777776 455543 3567777777777664
Q ss_pred CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchh
Q 035852 721 FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT 800 (960)
Q Consensus 721 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (960)
+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-------------------------------------------------- 366 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETLP-------------------------------------------------- 366 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhhc--------------------------------------------------
Confidence 555442 56777777777765 3443221
Q ss_pred hhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhh----ccCCCCCEEECcCCccc
Q 035852 801 FKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI----GAMALLESLDFSSNRLE 867 (960)
Q Consensus 801 ~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l----~~l~~L~~L~Ls~N~l~ 867 (960)
+.|+.|+|++|+|+ .+|..+.. .|+.||+++|+++ .+|+.+ +.++.+..|+|.+|.++
T Consensus 367 -----~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 -----PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -----CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 12467777777777 56666543 5777777777776 445443 33466677777777776
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.3e-19 Score=213.27 Aligned_cols=247 Identities=26% Similarity=0.368 Sum_probs=193.0
Q ss_pred CCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEEC
Q 035852 560 QLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRL 639 (960)
Q Consensus 560 ~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 639 (960)
+.+.|+++++.++......+..++.|++++|+++. +|... .++|+.|++++|+++ .+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l------~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENL------QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhh------ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35677777777775433356789999999999884 44332 257999999999988 4676554 47999999
Q ss_pred CCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc
Q 035852 640 DNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG 719 (960)
Q Consensus 640 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~ 719 (960)
++|++. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc
Confidence 999998 7787664 58999999999998 5787664 58999999999998 5776543 478999999999985
Q ss_pred cCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccch
Q 035852 720 VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTL 799 (960)
Q Consensus 720 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (960)
+|..+ .++|+.|++++|.+++ +|..+.
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~------------------------------------------------- 345 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP------------------------------------------------- 345 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc-------------------------------------------------
Confidence 55544 3689999999999874 554321
Q ss_pred hhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC----C
Q 035852 800 TFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT----V 875 (960)
Q Consensus 800 ~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l----~ 875 (960)
++|+.|+|++|+|+ .+|..+. +.|+.|+|++|+++ .+|+.+.. .|+.||+++|+++ .+|..+ .
T Consensus 346 ------~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~--sL~~LdLs~N~L~-~LP~sl~~~~~ 412 (754)
T PRK15370 346 ------PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA--ALQIMQASRNNLV-RLPESLPHFRG 412 (754)
T ss_pred ------CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH--HHHHHhhccCCcc-cCchhHHHHhh
Confidence 23589999999998 6887664 68999999999999 57877753 6999999999998 666654 4
Q ss_pred CCCCCCEEEcccCccee
Q 035852 876 NLVFLSHFNISYNNLSG 892 (960)
Q Consensus 876 ~l~~L~~l~ls~N~l~g 892 (960)
.++.+..+++.+|+++.
T Consensus 413 ~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCCccEEEeeCCCccH
Confidence 45788999999999873
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=5.8e-18 Score=186.43 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=37.2
Q ss_pred EEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCC----chhhhcCCCCCcEEeCCCCCCC
Q 035852 116 YLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGM----IPNQIGNLSNLQYLNLRPNYLG 174 (960)
Q Consensus 116 ~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~i~ 174 (960)
.|+|..+.+++...+..+..+.+|++|+++++.++.. ++..+...++|++|+++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 3566666666544556666667777777777776432 4455566666777777766543
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.8e-18 Score=185.86 Aligned_cols=60 Identities=28% Similarity=0.191 Sum_probs=31.6
Q ss_pred EEeCCCCccc-CCchhhhcCCCCCcEEeCCCCCCCCCccCCcc-cccCCCccceeecCCCCC
Q 035852 141 FLDLSGAGFV-GMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLENLDLSGVDL 200 (960)
Q Consensus 141 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l 200 (960)
.|+|..+.+. ...+..+..+.+|++|+++++.++......+. .+...+.+++++++++.+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 4666666666 33445556666677777777765432222222 233344455555554443
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-18 Score=157.34 Aligned_cols=184 Identities=27% Similarity=0.497 Sum_probs=134.0
Q ss_pred CCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852 653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK 732 (960)
Q Consensus 653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 732 (960)
..+.+.+.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhh
Confidence 34556666777777776 66667777777777777777777 6777776 6777888888777776 6788888888888
Q ss_pred eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID 812 (960)
Q Consensus 733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 812 (960)
.||+.+|+++.. ..||.|+. ++.|..|+
T Consensus 106 vldltynnl~e~-----------------------------~lpgnff~-----------------------m~tlraly 133 (264)
T KOG0617|consen 106 VLDLTYNNLNEN-----------------------------SLPGNFFY-----------------------MTTLRALY 133 (264)
T ss_pred hhhccccccccc-----------------------------cCCcchhH-----------------------HHHHHHHH
Confidence 888888887521 12233221 12346788
Q ss_pred ccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCC---CEEEcccCc
Q 035852 813 LSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFL---SHFNISYNN 889 (960)
Q Consensus 813 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L---~~l~ls~N~ 889 (960)
|+.|.|. .+|.++++|++|+.|.+..|.+- ++|.+++.++.|+.|.+-+|+++ .+|.+++++.-. +++.+..|.
T Consensus 134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 8888887 88888999999999999988887 68889999999999999999988 778777776432 344556666
Q ss_pred ceecCC
Q 035852 890 LSGEVP 895 (960)
Q Consensus 890 l~g~iP 895 (960)
...+|-
T Consensus 211 wv~pIa 216 (264)
T KOG0617|consen 211 WVNPIA 216 (264)
T ss_pred CCChHH
Confidence 655443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=3.4e-18 Score=154.88 Aligned_cols=183 Identities=25% Similarity=0.464 Sum_probs=97.7
Q ss_pred CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIIL 710 (960)
Q Consensus 631 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L 710 (960)
+..++.|.|++|+++ .+|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. .+|..++ .+|.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence 344444455555554 44444455555555555555554 44555555555555555555554 4454444 45555555
Q ss_pred eecccccc-ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852 711 ILRSNKFH-GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789 (960)
Q Consensus 711 ~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (960)
++.+|++. ..+|..|..++.|+-|++++|.|. .+|..+++++.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------------------------------- 152 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------------------------------- 152 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence 55555443 334545555555555555555554 445444444433
Q ss_pred eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCC---CCEEECcCCcc
Q 035852 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMAL---LESLDFSSNRL 866 (960)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~---L~~L~Ls~N~l 866 (960)
+.|.+..|.+- .+|.+++.|+.|+.|.+.+|+++ .+|++++++.- =+.+.+.+|..
T Consensus 153 -------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 153 -------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred -------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 44555555555 66777777777777777777776 56666665532 23445566666
Q ss_pred cccCCCC
Q 035852 867 EGEIPKN 873 (960)
Q Consensus 867 ~g~iP~~ 873 (960)
...|.++
T Consensus 212 v~pIaeQ 218 (264)
T KOG0617|consen 212 VNPIAEQ 218 (264)
T ss_pred CChHHHH
Confidence 5555544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=5.1e-14 Score=166.22 Aligned_cols=117 Identities=35% Similarity=0.557 Sum_probs=106.0
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
++.|+|++|.++|.+|.+++++++|+.|+|++|.++|.+|+.++.+++|+.|||++|+++|.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCCCcc--cCCCCccccCCCCCccCccccCCcC
Q 035852 888 NNLSGEVPDEAQ--FATFDSSSYIGDEYLCGPVLKKLCT 924 (960)
Q Consensus 888 N~l~g~iP~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~ 924 (960)
|+++|.+|.... +.......+.||+++||.|..+.|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999998522 2233455689999999987556785
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.46 E-value=3.1e-13 Score=159.63 Aligned_cols=132 Identities=36% Similarity=0.532 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCc----cccceeeCC--CC--CceEEEeCCCCCCcCCCcccccccccc
Q 035852 30 GCVESEREALLSFKQDLEDPSNRLATWIGDGDCC----KWAGVICDN--FT--GHVLELHLGNPWEDDHGHQAKESSALV 101 (960)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~ 101 (960)
.+.++|.+||+++|+++.++.. .+|.+ ..|| .|.||.|.. .. .+|+.|+|+++ .+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n-------------~L~ 431 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ-------------GLR 431 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCC-------------Ccc
Confidence 4567899999999999876542 48987 4553 799999953 22 25999999986 889
Q ss_pred cccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCcc
Q 035852 102 GKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV 178 (960)
Q Consensus 102 g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~ 178 (960)
|.+|+.++++++|++|+|++|.+.+. +|..++.+++|++|+|++|++.+.+|..++++++|++|++++|.++...+
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 99999999999999999999999985 99999999999999999999999999999999999999999998775433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=2e-14 Score=154.29 Aligned_cols=113 Identities=27% Similarity=0.438 Sum_probs=58.3
Q ss_pred cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852 635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714 (960)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~ 714 (960)
...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+.++..|++|||+.|+++ .+|..+. .--|+.|.+++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sN 152 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSN 152 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEec
Confidence 34455555554 45555555555555555555554 45555555555555555555555 4555544 22355555555
Q ss_pred ccccccCchhhcCCCCCCeEeecCCcCccccCcccccccc
Q 035852 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTA 754 (960)
Q Consensus 715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~ 754 (960)
|+++ .+|+.++.+..|..||.+.|.+. .+|..++.+.+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s 190 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS 190 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence 5555 44555555555555555555554 34444444333
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.3e-13 Score=148.22 Aligned_cols=195 Identities=27% Similarity=0.407 Sum_probs=152.4
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
++.-...|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|++|+|+.|+++ .+|..+..|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455677888877 67777788888888888888887 78888888888888888888888 7777777664 88888
Q ss_pred cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
+++|+++ .+|..++ ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|.++..++
T Consensus 150 ~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp------------- 212 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP------------- 212 (722)
T ss_pred EecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-------------
Confidence 8888887 7888887 7888888888888887 67778888888998888888886 5565554322
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI 846 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 846 (960)
|..||+|+|+++ .||.+|.+|+.|++|-|.+|.+. ..
T Consensus 213 -----------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 213 -----------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred -----------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 367899999988 88999999999999999999887 56
Q ss_pred chhh---ccCCCCCEEECcCCc
Q 035852 847 PENI---GAMALLESLDFSSNR 865 (960)
Q Consensus 847 P~~l---~~l~~L~~L~Ls~N~ 865 (960)
|..| |...--+.|+.--++
T Consensus 250 PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 250 PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hHHHHhccceeeeeeecchhcc
Confidence 7666 344445566666554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.4e-12 Score=142.94 Aligned_cols=200 Identities=32% Similarity=0.512 Sum_probs=127.8
Q ss_pred EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC-CCcEEECCCCeecccCCcCCcCCCCCcEEecCCC
Q 035852 612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS-LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690 (960)
Q Consensus 612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 690 (960)
.+++..|.+...+. .+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 46666666643332 3344467778888888777 5666666664 7888888888777 56666777777888888888
Q ss_pred cccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCC
Q 035852 691 EFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYP 770 (960)
Q Consensus 691 ~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~ 770 (960)
+++ .+|.... ..+.|+.|++++|++. .+|........|+.+++++|+.. .++..+.+++.
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~---------------- 233 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN---------------- 233 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence 777 5665553 4677777777777777 45555445555777777777522 22323322222
Q ss_pred CCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhh
Q 035852 771 SDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENI 850 (960)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l 850 (960)
+..+.+++|++. .+|..++.++.++.|++++|+++ .++. +
T Consensus 234 -------------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~ 273 (394)
T COG4886 234 -------------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-L 273 (394)
T ss_pred -------------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-c
Confidence 245556666665 44666777777777777777776 3443 6
Q ss_pred ccCCCCCEEECcCCcccccCCCCC
Q 035852 851 GAMALLESLDFSSNRLEGEIPKNT 874 (960)
Q Consensus 851 ~~l~~L~~L~Ls~N~l~g~iP~~l 874 (960)
+.+..++.||+++|.++..+|...
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccCccCEEeccCccccccchhhh
Confidence 777777777777777776655543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=8.3e-12 Score=141.42 Aligned_cols=198 Identities=32% Similarity=0.507 Sum_probs=107.5
Q ss_pred EEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCC-CCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852 636 VLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCT-ELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714 (960)
Q Consensus 636 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~ 714 (960)
.++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+. .++.|+.|++++
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 4555555553222 22334455666666666665 4454444443 6666666666665 4544444 566666666666
Q ss_pred ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL 794 (960)
Q Consensus 715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (960)
|+++ .+|...+..+.|+.|++++|+++ .+|..+...
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~------------------------------------------ 208 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL------------------------------------------ 208 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhh------------------------------------------
Confidence 6665 33433335566666666666654 333322111
Q ss_pred cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC
Q 035852 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874 (960)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l 874 (960)
..|+++++++|+.. .+|..+.+++.+..+.+++|++.. +|..++.++.++.|++++|.++ .++. +
T Consensus 209 -----------~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~ 273 (394)
T COG4886 209 -----------SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS-SISS-L 273 (394)
T ss_pred -----------hhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccc-cccc-c
Confidence 11355566666433 455556666666666666666552 3555666666666666666665 3333 5
Q ss_pred CCCCCCCEEEcccCcceecCCC
Q 035852 875 VNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 875 ~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
+.+..++.|++++|.++...|.
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccCccCEEeccCccccccchh
Confidence 5666666666666666554443
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-11 Score=126.31 Aligned_cols=255 Identities=25% Similarity=0.304 Sum_probs=150.1
Q ss_pred ccccCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCCCCc---ccCCchh-------hhcCCCCCcEEeCCCCC
Q 035852 106 PALLDFEHLIYLNLSYNDFKGI---QIPRFLGSMGNLRFLDLSGAG---FVGMIPN-------QIGNLSNLQYLNLRPNY 172 (960)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~L~~n~ 172 (960)
+.+..+..+++++||+|.|... .+...+.+.++|+..++|+-- ....+|. ++-.+++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4455667777777777776432 133445566777777777532 2223443 33455677777777776
Q ss_pred CCCCccCCcc-cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCC
Q 035852 173 LGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFD 251 (960)
Q Consensus 173 i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 251 (960)
+..-....+. .++++..|++|+|.+|.+....... ++ +.|..|. . ....+.-+.|+++...+|++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~--l~--~al~~l~--~-------~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGR--LG--RALFELA--V-------NKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHH--HH--HHHHHHH--H-------HhccCCCcceEEEEeeccccc
Confidence 6544444333 4556666777776666655431100 00 0011111 0 112334456777777777765
Q ss_pred CC---hhHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCCCc----chhhhcCCCCCCEEeeeC
Q 035852 252 NS---LIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFSYL----IPEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 252 ~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~ 320 (960)
++ .+...+...+.|+.+.++.|.|... +...+..+++|++|||..|.++.. +...+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 32 2345566677788888887776532 234566788888888888877643 234456677888888888
Q ss_pred ccccccccHHH----HhcCCCCCEEeCCCCCCCcc----cccccccCCCCCEEEcCCcccC
Q 035852 321 NRLQGRISSVL----LENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLS 373 (960)
Q Consensus 321 n~l~~~i~~~~----l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 373 (960)
|.+...-.... -...++|++|.+.+|.++.. +.......+.|+.|++++|++.
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 87764332111 13467888888888877532 2223455788888888888884
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=1.9e-11 Score=124.68 Aligned_cols=190 Identities=21% Similarity=0.264 Sum_probs=108.4
Q ss_pred CCCCCcEEeCCCCCCCCCh---hHHhhcCCCCCCEEeccCcccCCCC-------------cccccCCCCCCEEeCCCCcC
Q 035852 236 NFSSLVTLDLSHNQFDNSL---IATQLYGLCNLVFLDLSDNNFQGPI-------------PDTIQNWTSLRHLDLSSNHF 299 (960)
Q Consensus 236 ~l~~L~~L~Ls~n~l~~~~---~~~~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n~l 299 (960)
.+++|++||||.|.+.... +-+.+..+..|++|.|.+|.+...- ....+.-+.|+++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3344455555555443211 1223445566666666666554211 11223456788888888877
Q ss_pred CCc----chhhhcCCCCCCEEeeeCcccccc---ccHHHHhcCCCCCEEeCCCCCCCc----ccccccccCCCCCEEEcC
Q 035852 300 SYL----IPEWLNKFSRLEYLSLSSNRLQGR---ISSVLLENLSSIQSLDLSFNELEW----KIPRSFSRFCNLRSISLS 368 (960)
Q Consensus 300 ~~~----~p~~l~~l~~L~~L~L~~n~l~~~---i~~~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~ 368 (960)
... +...|...+.|+.+.+..|.+... .-...+..+++|+.|||.+|-++. .+...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 543 234456667888888888877522 122456778888888888887753 233455667778888888
Q ss_pred CcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCC----chhhhhcCCCCCCEEecCCCcC
Q 035852 369 GIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSI 426 (960)
Q Consensus 369 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l 426 (960)
+|.+...+...+...+... .+.|+.|.+.+|.++. .+...+...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~-~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKES-APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhcc-CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8887777777666665544 4556666666665542 1222233344444444444444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.2e-11 Score=127.48 Aligned_cols=165 Identities=25% Similarity=0.250 Sum_probs=82.9
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCch--hhhcCCCCCcEEeCCCCCCCCCccCCcccccC
Q 035852 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIP--NQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYD 186 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 186 (960)
.+++.||...|.++.+.....-.....|++++.||||.|-+...-| .-..++++|+.|+++.|.+..-...... ..
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--LL 195 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--hh
Confidence 5667777777777766542222456677777777777776554322 3345677777777777765432211111 13
Q ss_pred CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCC
Q 035852 187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266 (960)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 266 (960)
+++|+.|.+++|.++. .........+|+|+.|+|..|...........-+..|+.|||++|.+-+...-...+.++.|+
T Consensus 196 l~~lK~L~l~~CGls~-k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSW-KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCH-HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 4555566666665552 222233344555555555555422222222333444555555555443211112334444444
Q ss_pred EEeccCcccC
Q 035852 267 FLDLSDNNFQ 276 (960)
Q Consensus 267 ~L~Ls~n~l~ 276 (960)
.|+++.|++.
T Consensus 275 ~Lnls~tgi~ 284 (505)
T KOG3207|consen 275 QLNLSSTGIA 284 (505)
T ss_pred hhhccccCcc
Confidence 4444444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.4e-11 Score=127.19 Aligned_cols=214 Identities=21% Similarity=0.175 Sum_probs=133.9
Q ss_pred hcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCc-c
Q 035852 157 IGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV-A 235 (960)
Q Consensus 157 l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~ 235 (960)
=+++++||...|.++.+...... +....|++++.|||+.|-+............+++|+.|+++.|++........ .
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred hhhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 35566666666666655433222 34456667777777777666665556666777888888888887665443222 3
Q ss_pred CCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCC
Q 035852 236 NFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLE 314 (960)
Q Consensus 236 ~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~ 314 (960)
.+++|+.|.++.|.++...+...+..+++|+.|+|..|...........-+..|+.|||++|.+...- -...+.++.|+
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 56778888888888874445555667788888888888533333344456778888888888776531 13456778888
Q ss_pred EEeeeCccccccccHH------HHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCCcccC
Q 035852 315 YLSLSSNRLQGRISSV------LLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSGIQLS 373 (960)
Q Consensus 315 ~L~L~~n~l~~~i~~~------~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~ 373 (960)
.|+++.+.+. .+... ....+++|++|++..|++.. ..-..+..+++|+.|.+..|.+.
T Consensus 275 ~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888888776 22111 12456788888888887741 11223444556666655555554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.7e-09 Score=104.36 Aligned_cols=84 Identities=29% Similarity=0.337 Sum_probs=20.6
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhh-cCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWL-NKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L 341 (960)
.+|+.|++++|.++.. +.+..+++|++|++++|+++...+ .+ ..+++|++|++++|++..--....+..+++|++|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3444444444444321 123334444444444444443211 12 2344444444444444321111233444555555
Q ss_pred eCCCCCCC
Q 035852 342 DLSFNELE 349 (960)
Q Consensus 342 ~Ls~n~l~ 349 (960)
++.+|++.
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.8e-10 Score=110.89 Aligned_cols=87 Identities=30% Similarity=0.333 Sum_probs=56.3
Q ss_pred hhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCC
Q 035852 258 QLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSS 337 (960)
Q Consensus 258 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~ 337 (960)
.+..++.|+++||++|.|+ .+.+++.-.+.++.|++++|.+... ..++.+++|+.|||++|.++ .+. .+-..+.+
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGN 353 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGN 353 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhh-hhHhhhcC
Confidence 3444566777777777766 4556666667777777777776643 33666777777777777766 343 45556667
Q ss_pred CCEEeCCCCCCC
Q 035852 338 IQSLDLSFNELE 349 (960)
Q Consensus 338 L~~L~Ls~n~l~ 349 (960)
+++|.|+.|.+.
T Consensus 354 IKtL~La~N~iE 365 (490)
T KOG1259|consen 354 IKTLKLAQNKIE 365 (490)
T ss_pred EeeeehhhhhHh
Confidence 777777777664
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=5.4e-10 Score=111.11 Aligned_cols=129 Identities=28% Similarity=0.328 Sum_probs=70.1
Q ss_pred CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 317 (960)
+.|++|||++|.++ .+.++..-.+.++.|+++.|++... ..+..+++|++|||++|.++.. ..|-.++-+++.|.
T Consensus 284 q~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh--hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeee
Confidence 34555666666553 3444555556666666666665522 2255566666666666655532 33344555666666
Q ss_pred eeCccccccccHHHHhcCCCCCEEeCCCCCCCcc-cccccccCCCCCEEEcCCcccCC
Q 035852 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK-IPRSFSRFCNLRSISLSGIQLSH 374 (960)
Q Consensus 318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~ 374 (960)
|+.|.+. .+ ..+..+-+|..||+++|++... -...++++|.|+++.|.+|.+..
T Consensus 359 La~N~iE-~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIE-TL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHh-hh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 6666654 22 2344555566666666665421 12345666666666666666543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.85 E-value=3.8e-09 Score=101.91 Aligned_cols=84 Identities=33% Similarity=0.397 Sum_probs=25.7
Q ss_pred cCCCCCCEEeccCcccCCCCcccc-cCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCCEEeeeCccccccc--cHHHHhcC
Q 035852 260 YGLCNLVFLDLSDNNFQGPIPDTI-QNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLEYLSLSSNRLQGRI--SSVLLENL 335 (960)
Q Consensus 260 ~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~i--~~~~l~~l 335 (960)
..+++|++|++++|+++. +.+.+ ..+++|++|++++|++...- -..+..+++|+.|++.+|.++..- ....+..+
T Consensus 61 ~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l 139 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL 139 (175)
T ss_dssp ---TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred cChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence 334444444444444442 22222 23444444444444443211 123445555555555555554221 11335566
Q ss_pred CCCCEEeCC
Q 035852 336 SSIQSLDLS 344 (960)
Q Consensus 336 ~~L~~L~Ls 344 (960)
|+|+.||-.
T Consensus 140 P~Lk~LD~~ 148 (175)
T PF14580_consen 140 PSLKVLDGQ 148 (175)
T ss_dssp TT-SEETTE
T ss_pred ChhheeCCE
Confidence 777776643
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.84 E-value=2.8e-09 Score=128.56 Aligned_cols=104 Identities=28% Similarity=0.285 Sum_probs=50.5
Q ss_pred CCCEEEccCCc--CCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEE
Q 035852 215 SLLVLQLAGCQ--LSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHL 292 (960)
Q Consensus 215 ~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 292 (960)
.|++|-+.+|. +.......|..++.|++|||++|.-- +.+|..++.+-+||+|++++..+. .+|..++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45555555553 33333334445555555555544332 345555555555555555555554 445555555555555
Q ss_pred eCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852 293 DLSSNHFSYLIPEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 293 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 320 (960)
++..+.....+|.....+++|++|.+..
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccccccccccccchhhhcccccEEEeec
Confidence 5554443333344344455555555443
No 38
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.77 E-value=8.2e-09 Score=74.47 Aligned_cols=39 Identities=49% Similarity=1.051 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcCC-CCCCCCCCCCCC--CCCccccceeeC
Q 035852 33 ESEREALLSFKQDLE-DPSNRLATWIGD--GDCCKWAGVICD 71 (960)
Q Consensus 33 ~~~~~~ll~~k~~~~-~~~~~l~~W~~~--~~~c~w~gv~c~ 71 (960)
++|++||++||+++. +|.+.+.+|..+ ++||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999998 577889999864 699999999995
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=9.2e-09 Score=124.21 Aligned_cols=61 Identities=36% Similarity=0.517 Sum_probs=31.7
Q ss_pred CCCEEeCCCCC--CCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCC
Q 035852 113 HLIYLNLSYND--FKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLG 174 (960)
Q Consensus 113 ~L~~L~Ls~n~--~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~ 174 (960)
.|+.|-+.+|. +..+ .++++..++.|++|||++|.-.+.+|.+|+.|.+||+|+++++.+.
T Consensus 546 ~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS 608 (889)
T ss_pred ccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc
Confidence 45555555553 2221 2334555555566666555545555555555555555555555444
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=4.6e-10 Score=111.73 Aligned_cols=160 Identities=27% Similarity=0.230 Sum_probs=95.4
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc-cccCCCccc
Q 035852 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG-WLYDLSLLE 191 (960)
Q Consensus 113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~l~~L~ 191 (960)
.|++||||...++...+...+..|.+|+-|.|.++++.+.+...+++-.+|+.|+++.+. ++...... .+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence 588999999888765566778889999999999999998888889999999999998774 22222222 356777777
Q ss_pred eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCC--C-CCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852 192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLS--H-FPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268 (960)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 268 (960)
+|++++|.+.....-...-.--++|+.|+++++.-. . ....--..+++|.+|||++|.--.......+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 777777766553211111111245556666655311 0 0001113445555555554422112333344445555555
Q ss_pred eccCcc
Q 035852 269 DLSDNN 274 (960)
Q Consensus 269 ~Ls~n~ 274 (960)
.++.|.
T Consensus 344 SlsRCY 349 (419)
T KOG2120|consen 344 SLSRCY 349 (419)
T ss_pred ehhhhc
Confidence 555443
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=1.8e-09 Score=122.39 Aligned_cols=219 Identities=33% Similarity=0.357 Sum_probs=133.3
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS 188 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~ 188 (960)
..+..++.+++..|.+.. +-..++.+++|++|++.+|++... ...+..+++|++|++++|.|+.+ ..+..++
T Consensus 69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-----~~l~~l~ 140 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-----EGLSTLT 140 (414)
T ss_pred HHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-----cchhhcc
Confidence 356667777777777763 344577788888888888887653 22267788888888888877644 3355666
Q ss_pred ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF 267 (960)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 267 (960)
.|+.|++++|.++.+.. +..++.|+.+++++|++..+.+ . ...+.+++.+++.+|.+. ....+..+..+..
T Consensus 141 ~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~---~i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 141 LLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR---EIEGLDLLKKLVL 212 (414)
T ss_pred chhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh---cccchHHHHHHHH
Confidence 68888888887777543 2336677777777777766655 3 456667777777777664 2223333444444
Q ss_pred EeccCcccCCCCcccccCCC--CCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCC
Q 035852 268 LDLSDNNFQGPIPDTIQNWT--SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSF 345 (960)
Q Consensus 268 L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~ 345 (960)
+++..|.++..-+ +..+. +|+.+++++|.+... +..+..+..+..|++.+|++... ..+...+.+..+....
T Consensus 213 ~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 213 LSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLND 286 (414)
T ss_pred hhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc---ccccccchHHHhccCc
Confidence 4666666653211 22222 266777777766542 24455666666777766666522 2233444555555555
Q ss_pred CCCC
Q 035852 346 NELE 349 (960)
Q Consensus 346 n~l~ 349 (960)
+.+.
T Consensus 287 ~~~~ 290 (414)
T KOG0531|consen 287 NKLA 290 (414)
T ss_pred chhc
Confidence 5543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.7e-08 Score=79.82 Aligned_cols=59 Identities=36% Similarity=0.527 Sum_probs=33.0
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL 866 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 866 (960)
|+.|++++|+++...+..|..+++|+.||+++|.++...|..|..+++|+.|++++|++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45566666666533334555555666666666655555455555555555555555543
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.63 E-value=2.9e-08 Score=78.57 Aligned_cols=61 Identities=36% Similarity=0.467 Sum_probs=56.4
Q ss_pred cccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcc
Q 035852 830 RELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNL 890 (960)
Q Consensus 830 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l 890 (960)
++|+.|++++|+++...+..|..+++|+.||+++|+++...|..+.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999976667899999999999999999988888999999999999999975
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.58 E-value=6.6e-09 Score=117.79 Aligned_cols=216 Identities=30% Similarity=0.357 Sum_probs=104.8
Q ss_pred CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 317 (960)
..++.+.+..|.+. .+...+..+++|+.|++.+|++... ...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhh--hhhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 34444444444443 1223344555555555555555522 222445556666666666555442 244455566666
Q ss_pred eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccc-cccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEE
Q 035852 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIP-RSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLD 396 (960)
Q Consensus 318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 396 (960)
+++|.++ .+ ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+........... +..++
T Consensus 147 l~~N~i~-~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~--------l~~~~ 214 (414)
T KOG0531|consen 147 LSGNLIS-DI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKK--------LVLLS 214 (414)
T ss_pred eccCcch-hc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHH--------HHHhh
Confidence 6666554 22 223345556666666665553222 1 3455555555666555544332221111 13335
Q ss_pred cCCCCCCCchhhhhcCCC--CCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcc
Q 035852 397 LSNTTLSGSLTNQIGKFK--VLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474 (960)
Q Consensus 397 Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~ 474 (960)
+..|.++..-+ +..+. .|+.+++++|.+. .++..+..+..+..+++.+|++...- .+...+.+..+....+.
T Consensus 215 l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~---~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 215 LLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE---GLERLPKLSELWLNDNK 288 (414)
T ss_pred cccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc---cccccchHHHhccCcch
Confidence 55555542111 11122 2667777777766 33345566667777777777655221 23344444555555554
Q ss_pred cc
Q 035852 475 LT 476 (960)
Q Consensus 475 l~ 476 (960)
+.
T Consensus 289 ~~ 290 (414)
T KOG0531|consen 289 LA 290 (414)
T ss_pred hc
Confidence 43
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.3e-08 Score=99.85 Aligned_cols=178 Identities=25% Similarity=0.283 Sum_probs=94.8
Q ss_pred CCCEEeCCCCcCCCc-chhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC-CCcc-cccccccCCCCCE
Q 035852 288 SLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE-LEWK-IPRSFSRFCNLRS 364 (960)
Q Consensus 288 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~ 364 (960)
.|++|||+...++.. +-..+..|++|+.|.+.++++.+.|. ..+..-.+|+.|+++.+. ++.. ..--+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466666666555422 22234556666666666666665554 455556666666666543 2211 1113455666666
Q ss_pred EEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC---CchhhhhcCCCCCCEEecCCCc-CCCCCcccccCCCCC
Q 035852 365 ISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS---GSLTNQIGKFKVLNSVDLSENS-ISGQVPWSLGKLSSL 440 (960)
Q Consensus 365 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L 440 (960)
|+++.|.+....+..+.... .+.|+.|+++++.-. ..+..-..++++|.+|||++|. ++...-..|.+++.|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred cCchHhhccchhhhHHHhhh----chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 66666665544443333322 234566666665321 1222334567788888887764 333334455667777
Q ss_pred cEEecCCcccccccchh--hhcCCCCCcEeeccC
Q 035852 441 RYLDISNNQLNGTVSEI--HFANLSSLTFFYASR 472 (960)
Q Consensus 441 ~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~l~~ 472 (960)
++|.++.|.. .+|.. .+...|+|.+|++.+
T Consensus 341 ~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 341 QHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 7777777753 23321 234455555555544
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=7.9e-08 Score=94.84 Aligned_cols=227 Identities=21% Similarity=0.179 Sum_probs=128.3
Q ss_pred cCCCCCCEEeCCCCCCCCC---CCccccCCCCCCCEEeCCCCcc---cCCch-------hhhcCCCCCcEEeCCCCCCCC
Q 035852 109 LDFEHLIYLNLSYNDFKGI---QIPRFLGSMGNLRFLDLSGAGF---VGMIP-------NQIGNLSNLQYLNLRPNYLGG 175 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~---~~p~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~i~~ 175 (960)
..+..++.+|||+|.|... .+...|.+-++|++.+++.-.. ...++ .++-+|++|+..+||.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3466777777777777542 1334455567777777765321 11222 344567777777777776655
Q ss_pred CccCCcc-cccCCCccceeecCCCCCCCCCC--CcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC
Q 035852 176 LYVEDLG-WLYDLSLLENLDLSGVDLSKVSN--GPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN 252 (960)
Q Consensus 176 l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 252 (960)
..++.+. .+++-+.|++|.+++|.+..+.. +...+..+ .. ....++-+.|++.....|++..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--------a~-------nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--------AY-------NKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--------HH-------HhhhccCCCceEEEeccchhcc
Confidence 4444333 44555556666666555443311 00000000 00 0123345677777777777754
Q ss_pred Chh---HHhhcCCCCCCEEeccCcccCCCC-----cccccCCCCCCEEeCCCCcCCCcc----hhhhcCCCCCCEEeeeC
Q 035852 253 SLI---ATQLYGLCNLVFLDLSDNNFQGPI-----PDTIQNWTSLRHLDLSSNHFSYLI----PEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 253 ~~~---~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~~ 320 (960)
+.. ...+....+|+++.+..|.|...- -..+..+.+|++||+..|.++-.- ...+...+.|+.|.+.+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 322 223444468888888888776331 112346788888888888876432 33445566788888888
Q ss_pred ccccccccHHHHh-----cCCCCCEEeCCCCCCCc
Q 035852 321 NRLQGRISSVLLE-----NLSSIQSLDLSFNELEW 350 (960)
Q Consensus 321 n~l~~~i~~~~l~-----~l~~L~~L~Ls~n~l~~ 350 (960)
|-++..-....+. ..++|+.|...+|...+
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 8777544322222 34677777777776654
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=9.2e-08 Score=94.37 Aligned_cols=169 Identities=20% Similarity=0.208 Sum_probs=96.9
Q ss_pred cCCCCCcEEeCCCCCCCC---ChhHHhhcCCCCCCEEeccCcccCCC----Ccc---------cccCCCCCCEEeCCCCc
Q 035852 235 ANFSSLVTLDLSHNQFDN---SLIATQLYGLCNLVFLDLSDNNFQGP----IPD---------TIQNWTSLRHLDLSSNH 298 (960)
Q Consensus 235 ~~l~~L~~L~Ls~n~l~~---~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~---------~l~~l~~L~~L~Ls~n~ 298 (960)
.+|++|+..+||.|.|.. ..+-+.++.-+.|++|.+++|.+-.. +.. -..+-+.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 334444444444444431 11223344556666666666654311 111 12345778888888887
Q ss_pred CCCcch----hhhcCCCCCCEEeeeCcccccc----ccHHHHhcCCCCCEEeCCCCCCCccc----ccccccCCCCCEEE
Q 035852 299 FSYLIP----EWLNKFSRLEYLSLSSNRLQGR----ISSVLLENLSSIQSLDLSFNELEWKI----PRSFSRFCNLRSIS 366 (960)
Q Consensus 299 l~~~~p----~~l~~l~~L~~L~L~~n~l~~~----i~~~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~ 366 (960)
+..... ..+..-..|+.+.+..|.+.-. +....+..+.+|+.|||++|-++..- ...+...+.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 754321 1223335788888888877632 11123456788888888888776322 23445566788888
Q ss_pred cCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC
Q 035852 367 LSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS 403 (960)
Q Consensus 367 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 403 (960)
+.+|-++..+...+...+.....++|..|...+|...
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888887777777766666555555666655555544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=7.1e-08 Score=85.38 Aligned_cols=62 Identities=35% Similarity=0.539 Sum_probs=37.6
Q ss_pred cEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC
Q 035852 809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873 (960)
Q Consensus 809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~ 873 (960)
+.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|..+..|.++.+||.-.|... +||..
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence 55666666666 56666666666666666666665 44555666666666666666554 44443
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=3.6e-07 Score=91.53 Aligned_cols=112 Identities=22% Similarity=0.196 Sum_probs=76.0
Q ss_pred CCcEEeCCCCCCCCCccCCcccc-cCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCC
Q 035852 162 NLQYLNLRPNYLGGLYVEDLGWL-YDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSL 240 (960)
Q Consensus 162 ~L~~L~L~~n~i~~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 240 (960)
.++.|.+.++.|... +++..+ +..+.++++||.+|.+++..++...+.++|.|+.|+++.|.+...+...-...++|
T Consensus 46 a~ellvln~~~id~~--gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNE--GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcc--hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 444455555544322 122222 35677888888888888887777888889999999999998887665333566788
Q ss_pred cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCccc
Q 035852 241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNF 275 (960)
Q Consensus 241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l 275 (960)
++|-|.+..+.=......+..++.+++|+++.|.+
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88888887775233445566778888888887743
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=9.3e-08 Score=106.44 Aligned_cols=109 Identities=33% Similarity=0.363 Sum_probs=55.9
Q ss_pred CccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcc-cccCCCCCCEEeCCCCcCCCcchhhhcCCC
Q 035852 233 SVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPD-TIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311 (960)
Q Consensus 233 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 311 (960)
++.-++.|+.|+|++|+++ . -+.+..+++|++|||+.|.+. .+|. ....+. |+.|.+++|.++.. ..+.++.
T Consensus 182 SLqll~ale~LnLshNk~~-~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~Lk 254 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFT-K--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLK 254 (1096)
T ss_pred HHHHHHHhhhhccchhhhh-h--hHHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhh
Confidence 3444455556666666554 1 225555566666666666555 2222 122222 56666666655543 2355556
Q ss_pred CCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852 312 RLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348 (960)
Q Consensus 312 ~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l 348 (960)
+|+.||+++|-+.+.-....+..+..|++|+|.+|.+
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 6666666666555433323344555555566666554
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=1.6e-06 Score=86.98 Aligned_cols=210 Identities=20% Similarity=0.197 Sum_probs=128.6
Q ss_pred CCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCC--chhhhhcCCCCCCEEecCCCcCCCCCcccc-cCC
Q 035852 361 NLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSG--SLTNQIGKFKVLNSVDLSENSISGQVPWSL-GKL 437 (960)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l 437 (960)
.++-+.+.++.+...+....... ..+.++++||.+|.++. ++...+.++|.|+.|+++.|++...|- .+ ...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~----~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGS----SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHH----HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccc
Confidence 33444555555544333222221 12335778888888764 455567789999999999998875443 22 345
Q ss_pred CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCC---CCCcccccceEEecccccCCC--CCCcccccCcc
Q 035852 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKAN---PNWVPVFQLEELDLRSCYLGP--PFPSWLHSQNH 512 (960)
Q Consensus 438 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~ 512 (960)
.+|+.|-|.+..+.-.-....+..+|.++.|.++.|.+..... ..-...+.++++....|.... .......-+++
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 6788888888766544444467788889999999885443221 111122345555555553210 11111233567
Q ss_pred CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc--cCCCccccCCCCeEEcccCcCcCCC
Q 035852 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG--EIPNLTEVSQLGTLDLSANNLSGQL 575 (960)
Q Consensus 513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~l~~l~~L~~L~Ls~n~l~~~~ 575 (960)
+..+-+..|++.+.-.+.-+..++.+..|+|+.+++.. .+..+..+++|..|.++++++...+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 77777888877666555555667777788888888764 3346777788888888888776443
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=3.2e-07 Score=81.32 Aligned_cols=102 Identities=23% Similarity=0.299 Sum_probs=42.9
Q ss_pred ccEEECCCCccccCCCcCcC---CCCCCcEEECCCCeecccCCcCCcC-CCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852 634 LLVLRLDNNKFTGKLPTSLG---ALSLLRSLHLRNNNLSGTLPVSLGN-CTELETIDIGENEFSGNVPAWIGERFPRMII 709 (960)
Q Consensus 634 L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~ 709 (960)
+..++|++|++. .+++... ....|+..+|++|.+. .+|..|.. .+.+++|++++|+++ .+|..+. .++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhh
Confidence 445555555553 3333322 2233444455555444 33333322 224444444444444 3444433 3444444
Q ss_pred eeeccccccccCchhhcCCCCCCeEeecCCc
Q 035852 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNN 740 (960)
Q Consensus 710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 740 (960)
|+++.|++. ..|.-+..+.++..||..+|.
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 444444444 233333334444444444433
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=2.3e-07 Score=103.44 Aligned_cols=180 Identities=31% Similarity=0.349 Sum_probs=96.5
Q ss_pred CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC----------------------------CCccCC-
Q 035852 187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP----------------------------LSVANF- 237 (960)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------------~~l~~l- 237 (960)
+++++.+.+-...-.+. ..|..+..+++|++|.+.+|.+..... ..+.+-
T Consensus 83 lqkt~~lkl~~~pa~~p-t~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDP-TEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred HhhheeeeecccCCCCC-CCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 34444444433322222 225667778899999999987754210 000000
Q ss_pred --CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCE
Q 035852 238 --SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEY 315 (960)
Q Consensus 238 --~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 315 (960)
-.|...+.++|.+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++|||++|.+....--....+ +|+.
T Consensus 162 ~Wn~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~ 236 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQL 236 (1096)
T ss_pred hhhhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hhee
Confidence 12444455555553 3445555566666677777766633 256666667777777766654322122223 2666
Q ss_pred EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccc-ccccccCCCCCEEEcCCcccCCc
Q 035852 316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI-PRSFSRFCNLRSISLSGIQLSHQ 375 (960)
Q Consensus 316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ 375 (960)
|.+++|.++ .+ ..+.++.+|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+-..
T Consensus 237 L~lrnN~l~-tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 237 LNLRNNALT-TL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred eeecccHHH-hh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 666666665 22 24566666666777666554311 11234445566666666665543
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=3e-05 Score=84.29 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=52.7
Q ss_pred cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCC
Q 035852 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFL 731 (960)
Q Consensus 652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 731 (960)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 344688999999999887 5662 23469999998854444677654 35888999988843334553 46
Q ss_pred CeEeecCCcC
Q 035852 732 KILVLAGNNL 741 (960)
Q Consensus 732 ~~L~Ls~N~l 741 (960)
+.|++++|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 7777776654
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=1.1e-06 Score=92.40 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=15.9
Q ss_pred cCCCCCCCEEeCCCCc-ccCCchhhh-cCCCCCcEEeCCC
Q 035852 133 LGSMGNLRFLDLSGAG-FVGMIPNQI-GNLSNLQYLNLRP 170 (960)
Q Consensus 133 l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~L~~ 170 (960)
..+++++++|++.+|. +++..-.++ ..+++|++|++..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~ 199 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHS 199 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcc
Confidence 3445555555555443 121111222 2345555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.7e-05 Score=57.25 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=15.2
Q ss_pred cceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 832 LRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 832 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
|+.|++++|+++ .+|+.+++|++|+.||+++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23444444444444444444444
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.7e-05 Score=57.18 Aligned_cols=38 Identities=42% Similarity=0.678 Sum_probs=33.1
Q ss_pred ccccEEEccCCcccccCchhhhhhcccceeecCcccCcc
Q 035852 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844 (960)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 844 (960)
++|++|++++|+|+ .+|.++++|++|+.||+++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35799999999999 788889999999999999999983
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00021 Score=77.90 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=91.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCC-CCCCCccCCcccccC
Q 035852 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPN-YLGGLYVEDLGWLYD 186 (960)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~ 186 (960)
+..+.++++|++++|.++. +|. --.+|++|++++|.-...+|..+ ..+|++|++++| .+..++
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc---------
Confidence 4556899999999998875 562 23569999999876656677655 368999999988 544332
Q ss_pred CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCcc-CC-CCCcEEeCCCCCCCCChhHHhhcCCCC
Q 035852 187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVA-NF-SSLVTLDLSHNQFDNSLIATQLYGLCN 264 (960)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l-~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 264 (960)
.+|+.|++.++....+..+|. +|+.|.+.+++.... ..+. .+ ++|++|++++|... ..|..+. .+
T Consensus 112 -~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i--~LP~~LP--~S 178 (426)
T PRK15386 112 -ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNI--ILPEKLP--ES 178 (426)
T ss_pred -cccceEEeCCCCCcccccCcc------hHhheeccccccccc--cccccccCCcccEEEecCCCcc--cCccccc--cc
Confidence 458888888777665544443 466777654331110 0111 12 57999999988764 2343332 58
Q ss_pred CCEEeccCcc
Q 035852 265 LVFLDLSDNN 274 (960)
Q Consensus 265 L~~L~Ls~n~ 274 (960)
|+.|+++.+.
T Consensus 179 Lk~L~ls~n~ 188 (426)
T PRK15386 179 LQSITLHIEQ 188 (426)
T ss_pred CcEEEecccc
Confidence 9999998763
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00016 Score=69.28 Aligned_cols=87 Identities=26% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccc
Q 035852 112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE 191 (960)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~ 191 (960)
.....+||++|++... ..+..++.|.+|.|.+|+++..-|.--.-+++|+.|.|.+|.|..+ +++..+..+++|+
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l--~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL--GDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh--hhcchhccCCccc
Confidence 3455677777777532 4456677788888888887766665444466777888877776644 3444455556666
Q ss_pred eeecCCCCCCCC
Q 035852 192 NLDLSGVDLSKV 203 (960)
Q Consensus 192 ~L~Ls~n~l~~~ 203 (960)
+|.+-+|.++.-
T Consensus 117 ~Ltll~Npv~~k 128 (233)
T KOG1644|consen 117 YLTLLGNPVEHK 128 (233)
T ss_pred eeeecCCchhcc
Confidence 666666555543
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.49 E-value=1.6e-05 Score=84.00 Aligned_cols=230 Identities=20% Similarity=0.110 Sum_probs=98.5
Q ss_pred CCCCCcEEeCCCC-CCCCChhHHhhcCCCCCCEEeccCcc-cCCC-CcccccCCCCCCEEeCCCCcCCCcchhhh----c
Q 035852 236 NFSSLVTLDLSHN-QFDNSLIATQLYGLCNLVFLDLSDNN-FQGP-IPDTIQNWTSLRHLDLSSNHFSYLIPEWL----N 308 (960)
Q Consensus 236 ~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~ 308 (960)
.+++|++|++..+ .+++..+......+++|++|++++|. +++. +-....++..++.+.+.+|.-.+ .+.+ +
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~ 265 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAA 265 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhc
Confidence 3455666666552 33311122233456667777766663 2221 11223344455555555442111 1111 2
Q ss_pred CCCCCCEEeeeCcccccccc-HHHHhcCCCCCEEeCCCCCCCccc-ccc-cccCCCCCEEEcCCcc-cCCcchhhHHHhh
Q 035852 309 KFSRLEYLSLSSNRLQGRIS-SVLLENLSSIQSLDLSFNELEWKI-PRS-FSRFCNLRSISLSGIQ-LSHQKVSQVLAIF 384 (960)
Q Consensus 309 ~l~~L~~L~L~~n~l~~~i~-~~~l~~l~~L~~L~Ls~n~l~~~~-p~~-l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~ 384 (960)
.+..+..+++.+|....... ...-..+..|+.|+.+++...+.. -.. -.+..+|+.+.+.+++ ++...+..+..
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-- 343 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-- 343 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc--
Confidence 23344455554543221111 112234566777777665432111 111 2345666666666664 33333222221
Q ss_pred ccCCCCcccEEEcCCCCCC--CchhhhhcCCCCCCEEecCCCcCCCCC-----cccccCCCCCcEEecCCcccccccchh
Q 035852 385 SGCVSDVLESLDLSNTTLS--GSLTNQIGKFKVLNSVDLSENSISGQV-----PWSLGKLSSLRYLDISNNQLNGTVSEI 457 (960)
Q Consensus 385 ~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~i~~~ 457 (960)
....|+.+++..+... +++...-.+++.|+.+.+++|...... ...-.....|..+.++++.........
T Consensus 344 ---n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 344 ---NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred ---CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 1233556665555432 122222334666666666665432111 111123345555666665544332222
Q ss_pred hhcCCCCCcEeeccC
Q 035852 458 HFANLSSLTFFYASR 472 (960)
Q Consensus 458 ~~~~l~~L~~L~l~~ 472 (960)
.+..+++|+.+++.+
T Consensus 421 ~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 421 HLSICRNLERIELID 435 (483)
T ss_pred HHhhCcccceeeeec
Confidence 334444444444433
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=5.4e-05 Score=89.67 Aligned_cols=149 Identities=25% Similarity=0.405 Sum_probs=95.2
Q ss_pred CCCCEEeCCCCcc-cCCchhhhcC-CCCCcEEeCCCCCCCCCccCCc-ccccCCCccceeecCCCCCCCCCCCcccccCC
Q 035852 137 GNLRFLDLSGAGF-VGMIPNQIGN-LSNLQYLNLRPNYLGGLYVEDL-GWLYDLSLLENLDLSGVDLSKVSNGPLVTNAL 213 (960)
Q Consensus 137 ~~L~~L~Ls~n~l-~~~~p~~l~~-l~~L~~L~L~~n~i~~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l 213 (960)
.+|++||+++... ...-|..++. +|+|++|.+++-.+.. +++ ..+.++++|..||+|+++++.+ .+++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNISNL----SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCccCc----HHHhcc
Confidence 6677888877543 2233445554 6888888877654332 122 2456778888888888887775 567788
Q ss_pred CCCCEEEccCCcCCCC-CCCCccCCCCCcEEeCCCCCCCCCh-hH----HhhcCCCCCCEEeccCcccCCCCcccc-cCC
Q 035852 214 RSLLVLQLAGCQLSHF-PPLSVANFSSLVTLDLSHNQFDNSL-IA----TQLYGLCNLVFLDLSDNNFQGPIPDTI-QNW 286 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~-~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l 286 (960)
++|++|.+.+-.+... .-..+.++++|++||+|..+..... +. +.-..+++|+.||.|+..+.+.+-+.+ ..-
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH 274 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH 274 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC
Confidence 8888888877766652 2245678899999999987654222 11 222357899999999887775543332 233
Q ss_pred CCCCEE
Q 035852 287 TSLRHL 292 (960)
Q Consensus 287 ~~L~~L 292 (960)
++|+.+
T Consensus 275 ~~L~~i 280 (699)
T KOG3665|consen 275 PNLQQI 280 (699)
T ss_pred ccHhhh
Confidence 444443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.44 E-value=0.00011 Score=87.23 Aligned_cols=135 Identities=21% Similarity=0.254 Sum_probs=80.3
Q ss_pred CCCcEEeCCCCCCCCChhHHhhc-CCCCCCEEeccCcccCCC-CcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCE
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLY-GLCNLVFLDLSDNNFQGP-IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEY 315 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 315 (960)
.+|++||+++...-....+..++ .+|.|+.|.+++-.+... +-....++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666665433244455554 367788887777665422 233445677788888888777754 56777778887
Q ss_pred EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccc--cc----ccccCCCCCEEEcCCcccCC
Q 035852 316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKI--PR----SFSRFCNLRSISLSGIQLSH 374 (960)
Q Consensus 316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~--p~----~l~~l~~L~~L~L~~n~l~~ 374 (960)
|.+.+-.+...-....+.++++|+.||+|........ .. .-..+|+||.||.++..+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7777766653222245667788888888776543211 11 11235566555555554443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00029 Score=67.50 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 342 (960)
.+...+||++|.+... ..|..++.|..|.+++|+|+..-|.--.-+++|+.|.+.+|.+..-.....+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566677777766522 34566777788888888877765554455677888888888776322223466788888888
Q ss_pred CCCCCCCccc---ccccccCCCCCEEEcCCccc
Q 035852 343 LSFNELEWKI---PRSFSRFCNLRSISLSGIQL 372 (960)
Q Consensus 343 Ls~n~l~~~~---p~~l~~l~~L~~L~L~~n~l 372 (960)
+-+|+.+..- -..+..+++|+.||+.+...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 8888765321 12456778888888776543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00012 Score=73.26 Aligned_cols=117 Identities=24% Similarity=0.240 Sum_probs=77.5
Q ss_pred ccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCC--cccCCchhhhcCCCCCcEEeCCCCCCCCCcc
Q 035852 101 VGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGA--GFVGMIPNQIGNLSNLQYLNLRPNYLGGLYV 178 (960)
Q Consensus 101 ~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~ 178 (960)
.|.+....-.+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+.++.-...+++|++|++++|+|.. .
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--l 106 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--L 106 (260)
T ss_pred CCCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--c
Confidence 344555555666777777777666543 34456789999999999 6666676666777999999999998875 3
Q ss_pred CCcccccCCCccceeecCCCCCCCCCCC-cccccCCCCCCEEEcc
Q 035852 179 EDLGWLYDLSLLENLDLSGVDLSKVSNG-PLVTNALRSLLVLQLA 222 (960)
Q Consensus 179 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~l~~L~~L~L~ 222 (960)
..+..+..+.+|..|++..|..+..... ...+..+++|++|+-.
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 5556667777777778777766654221 1233344555555433
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.68 E-value=0.0027 Score=58.96 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=19.8
Q ss_pred cCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852 211 NALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 211 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls 271 (960)
..+++|+.+.+.. .+..+....|.++++|+.+++..+ +. ......+.++++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 3444444444442 344444444555545555555443 22 2222333444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0026 Score=59.07 Aligned_cols=124 Identities=13% Similarity=0.228 Sum_probs=66.0
Q ss_pred CCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCC
Q 035852 231 PLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF 310 (960)
Q Consensus 231 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 310 (960)
...|.++++|+.+.+.. .+. ......|.++++|+.+++..+ +...-...|.++++++.+.+.. .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 45788888899998875 454 444566778888998888775 5544556677887888888865 4444445567778
Q ss_pred CCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCC
Q 035852 311 SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNL 362 (960)
Q Consensus 311 ~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 362 (960)
++|+.+++..+ +. .++...+.++ +|+.+.+.. .+.......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 88888888665 43 4554667776 888888775 3443444566666655
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.00012 Score=73.13 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=75.5
Q ss_pred CCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCE
Q 035852 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQS 340 (960)
Q Consensus 261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~ 340 (960)
.+.+.+.|++-+|.+..+ ....+|+.|++|.|+-|+|+..-| +..|++|++|+|..|.|...-....+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356777888888888743 334678899999999999887644 7888999999999998874333345778899999
Q ss_pred EeCCCCCCCccccc-----ccccCCCCCEEE
Q 035852 341 LDLSFNELEWKIPR-----SFSRFCNLRSIS 366 (960)
Q Consensus 341 L~Ls~n~l~~~~p~-----~l~~l~~L~~L~ 366 (960)
|.|..|.-.+.-+. .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999887665544 345567776654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=8.2e-05 Score=74.33 Aligned_cols=85 Identities=27% Similarity=0.314 Sum_probs=57.6
Q ss_pred CCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCc
Q 035852 110 DFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSL 189 (960)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~ 189 (960)
.+...+.|++.+|.+.++ ....+++.|++|.||-|+++..-| +..|++|+.|+|..|.|.++ ..+..+.++++
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sl--dEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESL--DELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccH--HHHHHHhcCch
Confidence 355677888888888765 344577888888888888776544 67788888888888877644 34445555555
Q ss_pred cceeecCCCCCC
Q 035852 190 LENLDLSGVDLS 201 (960)
Q Consensus 190 L~~L~Ls~n~l~ 201 (960)
|+.|-|..|...
T Consensus 90 Lr~LWL~ENPCc 101 (388)
T KOG2123|consen 90 LRTLWLDENPCC 101 (388)
T ss_pred hhhHhhccCCcc
Confidence 555555555443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0013 Score=65.96 Aligned_cols=66 Identities=27% Similarity=0.316 Sum_probs=29.4
Q ss_pred cCCCCCCEEeCCCC--cCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC
Q 035852 284 QNWTSLRHLDLSSN--HFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349 (960)
Q Consensus 284 ~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~ 349 (960)
-.+++|+.|.++.| ++.+.++.....+++|++|++++|++...-....+..+.+|..|++.+|..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 34445555555555 3333333333444555555555555531000012334445555555555433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.99 E-value=0.0016 Score=76.20 Aligned_cols=127 Identities=25% Similarity=0.270 Sum_probs=66.6
Q ss_pred cCCCCCCEEEccCCc-CCCCCCCCccC-CCCCcEEeCCCCC-CCCChhHHhhcCCCCCCEEeccCcccCCC--CcccccC
Q 035852 211 NALRSLLVLQLAGCQ-LSHFPPLSVAN-FSSLVTLDLSHNQ-FDNSLIATQLYGLCNLVFLDLSDNNFQGP--IPDTIQN 285 (960)
Q Consensus 211 ~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~ 285 (960)
..+++|+.|+++.+. ++...-..++. +++|++|.+..+. +++..+......++.|++|++++|..... +.....+
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~ 319 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN 319 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence 445666666666665 44333223332 6677777766665 55445555556677788888887765311 2222344
Q ss_pred CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc--cccHHHHhcCCCCCEEeCCCCC
Q 035852 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG--RISSVLLENLSSIQSLDLSFNE 347 (960)
Q Consensus 286 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~i~~~~l~~l~~L~~L~Ls~n~ 347 (960)
+++|+.|.+....- +..++.+.+....-.. .........+++++.+.+..+.
T Consensus 320 c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 320 CPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 66666554433221 3333334333322211 2222445667777777776666
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.97 E-value=0.0028 Score=37.93 Aligned_cols=10 Identities=40% Similarity=0.444 Sum_probs=3.8
Q ss_pred eeecCcccCc
Q 035852 834 SLNLSHNFFS 843 (960)
Q Consensus 834 ~L~Ls~N~l~ 843 (960)
.||||+|+++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.85 E-value=0.004 Score=37.29 Aligned_cols=22 Identities=50% Similarity=0.628 Sum_probs=15.2
Q ss_pred CCCEEECcCCcccccCCCCCCCC
Q 035852 855 LLESLDFSSNRLEGEIPKNTVNL 877 (960)
Q Consensus 855 ~L~~L~Ls~N~l~g~iP~~l~~l 877 (960)
+|+.||||+|+++ .||.++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677788888777 777776543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.69 E-value=0.0043 Score=72.54 Aligned_cols=86 Identities=23% Similarity=0.148 Sum_probs=42.2
Q ss_pred CCCCCCEEeccCcccCCC--CcccccCCCCCCEEeCCCC-cCCCcch----hhhcCCCCCCEEeeeCcc-ccccccHHHH
Q 035852 261 GLCNLVFLDLSDNNFQGP--IPDTIQNWTSLRHLDLSSN-HFSYLIP----EWLNKFSRLEYLSLSSNR-LQGRISSVLL 332 (960)
Q Consensus 261 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-l~~~i~~~~l 332 (960)
.++.|+.|.+.++.-... +-.....++.|+.|+++++ ......+ .....+++|+.|+++.+. +++..- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 457777777776643322 2234456677777777652 1111111 122344566666666655 332211 222
Q ss_pred h-cCCCCCEEeCCCCC
Q 035852 333 E-NLSSIQSLDLSFNE 347 (960)
Q Consensus 333 ~-~l~~L~~L~Ls~n~ 347 (960)
. .+++|++|.+..|.
T Consensus 265 ~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCS 280 (482)
T ss_pred HhhCCCcceEccCCCC
Confidence 2 25556666555554
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.80 E-value=0.00044 Score=78.49 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=23.6
Q ss_pred CCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCC
Q 035852 360 CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLS 403 (960)
Q Consensus 360 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 403 (960)
+.+++++++.|.++......+......+. .++++.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~--~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCR--QLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhH--HHHHhhcccCccc
Confidence 45566666666666666655555554443 4555555555554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.89 E-value=0.0016 Score=73.98 Aligned_cols=93 Identities=25% Similarity=0.300 Sum_probs=47.7
Q ss_pred cCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCch----hhhhcCC-CCCCEEecCCCcCCCCC--
Q 035852 358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIGKF-KVLNSVDLSENSISGQV-- 430 (960)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l-~~L~~L~L~~n~l~~~~-- 430 (960)
...++++|++.+|.++......+...+..... .+..+++..|.+.+.. ...+..+ ..+++++++.|.++..-
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~-~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~ 280 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGES-LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVR 280 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccch-hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence 34556666666666654444444433332211 1334666666665431 2223333 45567777777666442
Q ss_pred --cccccCCCCCcEEecCCcccc
Q 035852 431 --PWSLGKLSSLRYLDISNNQLN 451 (960)
Q Consensus 431 --p~~l~~l~~L~~L~L~~n~l~ 451 (960)
...+..+++++++.++.|.+.
T Consensus 281 ~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 281 DLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHhhhHHHHHhhcccCccc
Confidence 223345556666666666655
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.13 E-value=0.012 Score=57.79 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=73.0
Q ss_pred hccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEE
Q 035852 805 LRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFN 884 (960)
Q Consensus 805 ~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ 884 (960)
....+.||+|.|++- ..-..+..++.|..||+|.|++. -.|+.++++..+..+++..|.++ ..|.+.+.++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345689999999987 55667888999999999999997 68999999999999999999988 7899999999999999
Q ss_pred cccCcce
Q 035852 885 ISYNNLS 891 (960)
Q Consensus 885 ls~N~l~ 891 (960)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888653
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.99 E-value=0.15 Score=28.24 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=4.8
Q ss_pred ccEEEccCCccc
Q 035852 808 LTNIDLSNNKFS 819 (960)
Q Consensus 808 L~~L~Ls~N~l~ 819 (960)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 455555555544
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.51 E-value=0.25 Score=27.37 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=3.5
Q ss_pred CcEEecCCCcc
Q 035852 682 LETIDIGENEF 692 (960)
Q Consensus 682 L~~L~Ls~N~l 692 (960)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.78 E-value=0.5 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.8
Q ss_pred CCCCcEEecCCCcccccCchHHh
Q 035852 679 CTELETIDIGENEFSGNVPAWIG 701 (960)
Q Consensus 679 l~~L~~L~Ls~N~l~g~ip~~~~ 701 (960)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6666654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.78 E-value=0.5 Score=29.48 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.8
Q ss_pred CCCCcEEecCCCcccccCchHHh
Q 035852 679 CTELETIDIGENEFSGNVPAWIG 701 (960)
Q Consensus 679 l~~L~~L~Ls~N~l~g~ip~~~~ 701 (960)
+++|++|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356777777777776 6666654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.26 E-value=0.63 Score=29.03 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=7.7
Q ss_pred CCCCEEECcCCccc
Q 035852 854 ALLESLDFSSNRLE 867 (960)
Q Consensus 854 ~~L~~L~Ls~N~l~ 867 (960)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.26 E-value=0.63 Score=29.03 Aligned_cols=14 Identities=43% Similarity=0.600 Sum_probs=7.7
Q ss_pred CCCCEEECcCCccc
Q 035852 854 ALLESLDFSSNRLE 867 (960)
Q Consensus 854 ~~L~~L~Ls~N~l~ 867 (960)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.26 E-value=0.25 Score=30.18 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=4.1
Q ss_pred ccEEEccCCccc
Q 035852 808 LTNIDLSNNKFS 819 (960)
Q Consensus 808 L~~L~Ls~N~l~ 819 (960)
|+.|+|++|+|+
T Consensus 4 L~~L~l~~n~i~ 15 (24)
T PF13516_consen 4 LETLDLSNNQIT 15 (24)
T ss_dssp -SEEE-TSSBEH
T ss_pred CCEEEccCCcCC
Confidence 334444444433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.17 E-value=0.44 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=16.1
Q ss_pred hcccceeecCcccCcccCchhhc
Q 035852 829 LRELRSLNLSHNFFSGRIPENIG 851 (960)
Q Consensus 829 l~~L~~L~Ls~N~l~g~iP~~l~ 851 (960)
+++|+.|||++|++++.....|+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36799999999999987666554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.44 E-value=0.42 Score=46.54 Aligned_cols=81 Identities=23% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHh-cCCCCCEEeCCCCC-CCcccccccccCCCCCEEE
Q 035852 289 LRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE-NLSSIQSLDLSFNE-LEWKIPRSFSRFCNLRSIS 366 (960)
Q Consensus 289 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~-~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ 366 (960)
++.+|-++..|...--+.+..++.++.|.+.+|.--+..-...++ -.++|+.|++++|. |+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 444444444444433344444555555555544432221111111 23456666666553 3333333444555555555
Q ss_pred cCC
Q 035852 367 LSG 369 (960)
Q Consensus 367 L~~ 369 (960)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 444
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.76 E-value=0.04 Score=54.26 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCC
Q 035852 232 LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFS 311 (960)
Q Consensus 232 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 311 (960)
..+...+..+.||++.|++. ..-..+..++.|..|+++.|.+. ..|..++....++++++..|..+. .|.+++..+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh-CCccccccC
Confidence 34455556666666666552 22334444555666666666655 455566666666666666655543 355566666
Q ss_pred CCCEEeeeCcccc
Q 035852 312 RLEYLSLSSNRLQ 324 (960)
Q Consensus 312 ~L~~L~L~~n~l~ 324 (960)
.++++++-.+.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 6666666555543
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.50 E-value=28 Score=38.84 Aligned_cols=34 Identities=15% Similarity=-0.069 Sum_probs=19.3
Q ss_pred CCCCEEeCCCCCCCcccccc--cccCCCCCEEEcCC
Q 035852 336 SSIQSLDLSFNELEWKIPRS--FSRFCNLRSISLSG 369 (960)
Q Consensus 336 ~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~ 369 (960)
..+++|.+++|.+.+..-.. ...-+..+.+++.+
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccc
Confidence 35778888888776544332 23334555555543
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.37 E-value=0.48 Score=46.12 Aligned_cols=81 Identities=21% Similarity=0.130 Sum_probs=45.2
Q ss_pred CcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCC-ccccc-CCCCCCEEeCCCC-cCCCcchhhhcCCCCCCEE
Q 035852 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPI-PDTIQ-NWTSLRHLDLSSN-HFSYLIPEWLNKFSRLEYL 316 (960)
Q Consensus 240 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 316 (960)
++.+|-++..|. ..--+.+.+++.++.|.+.+|.--+.- -+.++ -.++|+.|++++| +|+..--..+..+++|+.|
T Consensus 103 IeaVDAsds~I~-~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIM-YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHH-HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 455555555554 344455566666666666666432110 01111 3467777777766 3555555666777777777
Q ss_pred eeeCc
Q 035852 317 SLSSN 321 (960)
Q Consensus 317 ~L~~n 321 (960)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76553
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.13 E-value=4.2 Score=25.45 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=9.1
Q ss_pred CCCCEEECcCCccc
Q 035852 854 ALLESLDFSSNRLE 867 (960)
Q Consensus 854 ~~L~~L~Ls~N~l~ 867 (960)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.23 E-value=3.7 Score=25.60 Aligned_cols=15 Identities=33% Similarity=0.826 Sum_probs=8.1
Q ss_pred ccEEEccCCcccccCc
Q 035852 808 LTNIDLSNNKFSGEIP 823 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip 823 (960)
|+.|++|+|+|+ .+|
T Consensus 4 L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 4 LKELNVSNNQLT-SLP 18 (26)
T ss_pred cceeecCCCccc-cCc
Confidence 455555555555 444
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.39 E-value=35 Score=38.07 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=10.7
Q ss_pred CCCCEEeCCCCCCCC
Q 035852 112 EHLIYLNLSYNDFKG 126 (960)
Q Consensus 112 ~~L~~L~Ls~n~~~~ 126 (960)
+.++++|++.|.+..
T Consensus 165 pr~r~~dls~npi~d 179 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGD 179 (553)
T ss_pred chhhhhccCCCcccc
Confidence 457788888887654
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.59 E-value=15 Score=23.30 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=8.0
Q ss_pred CCCEEEcCCcccCCcchh
Q 035852 361 NLRSISLSGIQLSHQKVS 378 (960)
Q Consensus 361 ~L~~L~L~~n~l~~~~~~ 378 (960)
+|++|+|++|.+......
T Consensus 3 ~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 3 SLRELDLSNNKLGDEGAR 20 (28)
T ss_pred ccCEEECCCCCCCHHHHH
Confidence 344444444444443333
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.46 E-value=15 Score=41.82 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=19.1
Q ss_pred cCCCCCCEEeCCCCCCCCCC-CccccCCCCCCCEEeCCCC
Q 035852 109 LDFEHLIYLNLSYNDFKGIQ-IPRFLGSMGNLRFLDLSGA 147 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~-~p~~l~~l~~L~~L~Ls~n 147 (960)
.+.+.+..++|++|++.... +...-...++|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34555566666666554321 1222233455556666555
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.57 E-value=21 Score=40.61 Aligned_cols=64 Identities=30% Similarity=0.284 Sum_probs=34.7
Q ss_pred CCCCCCEEEccCCcCCCCCCC--CccCCCCCcEEeCCCC--CCCCChhHHhhcC--CCCCCEEeccCcccCCC
Q 035852 212 ALRSLLVLQLAGCQLSHFPPL--SVANFSSLVTLDLSHN--QFDNSLIATQLYG--LCNLVFLDLSDNNFQGP 278 (960)
Q Consensus 212 ~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n--~l~~~~~~~~l~~--l~~L~~L~Ls~n~l~~~ 278 (960)
+.+.+..++|++|++..+... .-...++|+.|+|++| .+. ...++.+ ...|++|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~---~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS---SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc---chhhhhhhcCCCHHHeeecCCccccc
Confidence 345566666666665544321 1123467777777777 333 1122222 24567777888776643
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.30 E-value=47 Score=20.52 Aligned_cols=11 Identities=73% Similarity=0.878 Sum_probs=6.1
Q ss_pred CCCCEEeCCCC
Q 035852 137 GNLRFLDLSGA 147 (960)
Q Consensus 137 ~~L~~L~Ls~n 147 (960)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
Done!