Query 035852
Match_columns 960
No_of_seqs 874 out of 5467
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:36:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-94 1.9E-98 882.0 53.1 710 31-928 9-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.6E-72 5.5E-77 691.5 42.7 620 104-893 92-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-58 1.2E-62 559.8 48.1 604 103-902 18-633 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-56 1.6E-60 541.0 46.7 575 238-918 25-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 4.3E-52 1.5E-56 499.2 43.4 535 241-896 15-565 (606)
6 3t6q_A CD180 antigen; protein- 100.0 6.1E-52 2.1E-56 497.9 42.9 533 192-871 16-564 (606)
7 4eco_A Uncharacterized protein 100.0 8E-54 2.7E-58 513.3 23.4 111 31-158 27-159 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-52 1.2E-56 499.9 37.1 542 190-896 13-563 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.1E-52 2.1E-56 497.9 37.4 536 163-871 13-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3E-50 1E-54 499.1 37.9 567 192-925 8-590 (844)
11 4ecn_A Leucine-rich repeat pro 100.0 3.4E-50 1.2E-54 488.1 34.5 331 28-454 263-660 (876)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-48 4.5E-53 484.3 38.4 536 242-919 8-565 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 3.1E-47 1E-51 453.9 32.8 522 191-898 10-538 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 5.4E-47 1.8E-51 451.8 33.4 501 112-872 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-45 1.2E-49 433.9 32.5 415 393-897 77-516 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 6E-44 2.1E-48 423.2 35.9 482 193-746 10-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-43 7.5E-48 426.7 39.9 520 214-893 52-582 (635)
18 4eco_A Uncharacterized protein 100.0 2.5E-45 8.5E-50 439.7 19.1 475 238-892 81-601 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-44 3.8E-49 426.2 23.5 459 290-895 3-485 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-42 8.1E-47 417.6 39.6 528 103-869 45-582 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 9.1E-44 3.1E-48 418.4 26.0 204 606-871 274-485 (520)
22 4ecn_A Leucine-rich repeat pro 100.0 4.7E-43 1.6E-47 425.6 29.2 153 681-893 674-842 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.1E-42 3.1E-46 404.7 23.9 464 286-896 30-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.2E-41 2.8E-45 396.5 23.9 462 241-871 34-514 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 1.8E-39 6.2E-44 371.5 20.9 390 390-897 11-417 (454)
26 1jl5_A Outer protein YOPM; leu 100.0 9.6E-39 3.3E-43 365.5 25.3 258 537-897 174-435 (454)
27 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-39 5.2E-44 354.5 16.7 293 30-371 2-302 (313)
28 3v47_A TOLL-like receptor 5B a 100.0 7.6E-38 2.6E-42 361.6 27.5 390 393-900 13-417 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 5.5E-37 1.9E-41 354.4 32.1 393 267-747 14-413 (455)
30 3bz5_A Internalin-J, INLJ; leu 100.0 9.8E-36 3.4E-40 340.9 27.7 346 212-713 62-407 (457)
31 1ogq_A PGIP-2, polygalacturona 100.0 1.9E-36 6.7E-41 329.9 18.0 259 608-923 50-312 (313)
32 3bz5_A Internalin-J, INLJ; leu 100.0 2.5E-35 8.6E-40 337.5 26.3 360 406-897 34-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 1.4E-33 4.8E-38 326.0 28.9 345 413-892 45-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 2.1E-33 7E-38 324.6 29.2 297 535-912 89-386 (466)
35 2id5_A Lingo-1, leucine rich r 100.0 1.9E-33 6.7E-38 326.4 21.5 324 537-918 33-360 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 1.2E-31 4.3E-36 311.2 29.5 309 103-451 25-333 (477)
37 3oja_B Anopheles plasmodium-re 100.0 7.6E-32 2.6E-36 321.1 24.0 331 510-918 50-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 2.1E-31 7.1E-36 300.7 24.4 331 510-918 44-378 (390)
39 3o6n_A APL1; leucine-rich repe 100.0 5.7E-31 1.9E-35 297.1 26.9 311 108-476 41-352 (390)
40 4fmz_A Internalin; leucine ric 100.0 6.6E-30 2.2E-34 283.7 31.1 306 108-475 40-345 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.1E-30 7.2E-35 308.6 27.8 311 109-476 48-358 (597)
42 4fcg_A Uncharacterized protein 100.0 7.7E-32 2.6E-36 295.3 13.8 279 29-348 22-313 (328)
43 4fmz_A Internalin; leucine ric 100.0 4.2E-29 1.5E-33 277.1 31.7 303 75-451 44-346 (347)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-33 9E-38 324.2 -6.9 381 438-891 3-440 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 8.8E-29 3E-33 272.4 24.1 224 604-889 98-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 5.1E-32 1.7E-36 313.4 -4.6 115 609-723 314-445 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-28 7.4E-33 269.3 23.8 295 113-449 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1E-27 3.6E-32 263.7 27.4 296 113-449 32-330 (330)
49 3ogk_B Coronatine-insensitive 100.0 7.3E-31 2.5E-35 313.9 1.2 413 104-550 65-527 (592)
50 4fcg_A Uncharacterized protein 100.0 9.1E-29 3.1E-33 270.8 16.7 227 607-891 80-314 (328)
51 1xku_A Decorin; proteoglycan, 100.0 6.5E-27 2.2E-31 257.4 29.5 276 214-547 52-330 (330)
52 2z80_A TOLL-like receptor 2, v 99.9 1.1E-27 3.6E-32 266.2 16.8 280 557-896 29-319 (353)
53 2z66_A Variable lymphocyte rec 99.9 4.4E-27 1.5E-31 255.8 19.1 234 608-895 28-265 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 3.6E-27 1.2E-31 261.9 17.5 283 60-455 27-318 (353)
55 3ogk_B Coronatine-insensitive 99.9 3.5E-28 1.2E-32 290.6 9.1 398 285-737 110-546 (592)
56 2z66_A Variable lymphocyte rec 99.9 9.4E-27 3.2E-31 253.2 17.1 229 112-374 28-262 (306)
57 1wwl_A Monocyte differentiatio 99.9 4.9E-28 1.7E-32 263.6 3.5 137 556-695 40-188 (312)
58 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.4E-30 258.2 23.8 229 608-892 75-304 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 2E-26 6.9E-31 247.7 15.7 228 611-895 14-242 (285)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.9E-26 6.5E-31 247.9 15.5 235 608-897 32-267 (285)
61 1wwl_A Monocyte differentiatio 99.9 1.8E-27 6.3E-32 259.1 6.1 247 579-892 42-310 (312)
62 3zyj_A Leucine-rich repeat-con 99.9 2.7E-25 9.4E-30 254.5 22.0 227 609-891 65-292 (440)
63 3zyj_A Leucine-rich repeat-con 99.9 2.9E-25 9.9E-30 254.3 22.2 249 561-868 45-293 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 4.3E-25 1.5E-29 253.8 22.4 249 610-917 56-306 (452)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-25 1.2E-29 260.5 21.1 202 608-896 101-302 (622)
66 3oja_A Leucine-rich immune mol 99.9 1.1E-25 3.9E-30 259.9 14.7 225 604-896 30-256 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 2E-24 6.7E-29 254.2 25.2 269 511-878 40-308 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-26 7.4E-31 251.2 4.9 89 807-897 192-282 (317)
69 2z62_A TOLL-like receptor 4, v 99.9 3.3E-24 1.1E-28 229.2 21.0 227 613-897 12-243 (276)
70 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-25 7.2E-30 243.4 11.0 243 583-896 13-256 (317)
71 2p1m_B Transport inhibitor res 99.9 1.2E-27 4.1E-32 286.2 -8.0 404 107-548 61-518 (594)
72 2p1m_B Transport inhibitor res 99.9 3.2E-26 1.1E-30 273.8 1.0 115 257-371 60-195 (594)
73 3oja_A Leucine-rich immune mol 99.9 1.4E-24 4.7E-29 250.8 12.6 223 628-918 30-254 (487)
74 2o6q_A Variable lymphocyte rec 99.9 5.1E-23 1.7E-27 219.0 22.3 217 60-324 2-218 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 2.7E-23 9.2E-28 222.1 16.3 212 608-871 28-241 (276)
76 3rfs_A Internalin B, repeat mo 99.9 1.3E-23 4.6E-28 223.6 13.2 205 628-897 37-241 (272)
77 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 215.4 20.9 205 634-895 18-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 4.5E-23 1.5E-27 219.6 14.3 207 607-878 40-246 (272)
79 2ca6_A RAN GTPase-activating p 99.9 5.6E-25 1.9E-29 247.5 -0.6 240 603-895 27-320 (386)
80 1p9a_G Platelet glycoprotein I 99.9 2.7E-22 9.3E-27 215.1 18.4 204 628-892 6-209 (290)
81 4glp_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 224.4 9.9 142 608-749 91-244 (310)
82 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.6E-28 233.0 5.1 237 608-893 22-299 (362)
83 1p9a_G Platelet glycoprotein I 99.9 7.3E-22 2.5E-26 211.8 17.5 205 604-869 6-210 (290)
84 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5E-28 235.9 3.1 237 581-871 33-320 (386)
85 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.6E-28 233.0 3.3 259 565-872 4-302 (362)
86 2ast_B S-phase kinase-associat 99.9 1.1E-22 3.9E-27 224.2 8.5 237 60-370 34-282 (336)
87 4glp_A Monocyte differentiatio 99.9 1.1E-22 3.7E-27 221.2 7.5 206 631-892 90-308 (310)
88 2xwt_C Thyrotropin receptor; s 99.9 9.4E-22 3.2E-26 205.2 13.8 203 623-888 25-236 (239)
89 3m19_A Variable lymphocyte rec 99.9 1.7E-21 5.8E-26 204.7 15.3 213 632-926 14-232 (251)
90 2ast_B S-phase kinase-associat 99.9 1.3E-22 4.3E-27 223.8 5.9 230 608-897 70-312 (336)
91 3m19_A Variable lymphocyte rec 99.8 1.2E-20 4.1E-25 198.3 17.9 131 608-742 14-144 (251)
92 1h6u_A Internalin H; cell adhe 99.8 6.3E-21 2.2E-25 206.6 15.7 195 628-892 37-231 (308)
93 2xwt_C Thyrotropin receptor; s 99.8 6.8E-21 2.3E-25 198.6 13.4 197 609-865 32-237 (239)
94 1h6u_A Internalin H; cell adhe 99.8 7E-20 2.4E-24 198.4 19.0 194 108-324 37-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 1.3E-20 4.6E-25 218.7 13.2 187 609-877 60-253 (571)
96 3cvr_A Invasion plasmid antige 99.8 2.1E-20 7.3E-25 217.0 14.0 184 632-897 59-249 (571)
97 2o6s_A Variable lymphocyte rec 99.8 9E-20 3.1E-24 185.6 14.7 129 612-744 11-139 (208)
98 2o6s_A Variable lymphocyte rec 99.8 5.6E-20 1.9E-24 187.2 11.5 175 635-897 10-184 (208)
99 4ay9_X Follicle-stimulating ho 99.8 8.3E-19 2.8E-23 193.9 18.2 220 610-888 32-256 (350)
100 4ay9_X Follicle-stimulating ho 99.8 6.3E-19 2.2E-23 194.8 14.5 244 611-915 12-259 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-19 9.8E-24 183.2 10.7 157 683-896 14-171 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 2.4E-18 8.3E-23 176.2 13.4 156 635-871 14-170 (220)
103 1h6t_A Internalin B; cell adhe 99.7 4.5E-18 1.6E-22 182.4 14.0 79 808-892 136-214 (291)
104 1m9s_A Internalin B; cell inva 99.7 2.2E-18 7.7E-23 202.5 11.3 225 581-879 22-259 (605)
105 1h6t_A Internalin B; cell adhe 99.7 3.6E-18 1.2E-22 183.2 10.8 174 628-869 42-215 (291)
106 2v9t_B SLIT homolog 2 protein 99.7 9.9E-18 3.4E-22 171.7 13.3 153 683-892 14-166 (220)
107 3e6j_A Variable lymphocyte rec 99.7 1.5E-17 5.2E-22 171.5 13.9 156 682-895 21-176 (229)
108 4b8c_D Glucose-repressible alc 99.7 8.2E-19 2.8E-23 211.7 4.3 131 615-751 208-338 (727)
109 4b8c_D Glucose-repressible alc 99.7 1.8E-18 6.3E-23 208.7 6.7 195 637-896 206-409 (727)
110 1dce_A Protein (RAB geranylger 99.7 4.5E-20 1.5E-24 215.7 -7.5 87 808-897 465-552 (567)
111 1dce_A Protein (RAB geranylger 99.7 2.1E-19 7.1E-24 210.1 -2.2 197 629-885 346-567 (567)
112 1m9s_A Internalin B; cell inva 99.7 3.3E-17 1.1E-21 192.6 15.6 126 606-742 63-188 (605)
113 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.2E-22 182.9 13.7 179 611-844 21-203 (361)
114 2v9t_B SLIT homolog 2 protein 99.7 3.4E-17 1.2E-21 167.7 13.7 153 635-868 14-166 (220)
115 4ezg_A Putative uncharacterize 99.7 2E-17 7E-22 166.4 11.8 81 809-892 115-195 (197)
116 3e6j_A Variable lymphocyte rec 99.7 6E-17 2E-21 167.1 14.9 157 633-871 20-176 (229)
117 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.3E-22 165.5 10.5 154 654-868 42-195 (197)
118 2xot_A Amphoterin-induced prot 99.7 8.5E-17 2.9E-21 178.4 14.6 177 562-743 21-203 (361)
119 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 164.0 9.0 110 808-918 56-166 (192)
120 1xeu_A Internalin C; cellular 99.7 3.6E-17 1.2E-21 172.5 8.6 171 630-893 17-187 (263)
121 1xeu_A Internalin C; cellular 99.7 6.4E-17 2.2E-21 170.5 7.4 170 607-869 18-187 (263)
122 1w8a_A SLIT protein; signaling 99.7 8.4E-17 2.9E-21 160.9 7.1 132 683-871 11-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 148.1 9.7 88 808-896 73-164 (168)
124 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 146.2 10.8 137 680-873 24-165 (168)
125 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 144.7 7.8 128 704-886 16-148 (149)
126 2wfh_A SLIT homolog 2 protein 99.5 2.6E-14 8.8E-19 142.7 12.6 86 808-893 56-141 (193)
127 2o6r_A Variable lymphocyte rec 99.5 2.3E-14 8E-19 141.2 11.6 89 808-896 54-142 (177)
128 2je0_A Acidic leucine-rich nuc 99.5 1E-14 3.4E-19 139.4 8.5 127 608-737 17-148 (149)
129 3sb4_A Hypothetical leucine ri 99.5 1.1E-14 3.9E-19 159.1 9.7 58 607-665 100-157 (329)
130 1ds9_A Outer arm dynein; leuci 99.5 3.9E-16 1.3E-20 157.1 -2.4 147 679-884 17-180 (198)
131 2wfh_A SLIT homolog 2 protein 99.5 3.1E-14 1.1E-18 142.1 11.5 129 683-869 13-141 (193)
132 2o6r_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 140.1 11.5 133 682-871 9-141 (177)
133 3sb4_A Hypothetical leucine ri 99.5 1.7E-14 5.9E-19 157.7 9.5 102 631-735 225-327 (329)
134 1ds9_A Outer arm dynein; leuci 99.5 8E-16 2.7E-20 154.8 -4.2 58 808-867 117-185 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.4 1.2E-13 4E-18 136.0 8.3 80 809-890 67-152 (176)
136 4fdw_A Leucine rich hypothetic 99.4 7.3E-12 2.5E-16 139.7 20.7 261 214-520 113-379 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.4 5.2E-13 1.8E-17 131.3 8.9 131 605-742 16-153 (176)
138 3g39_A Variable lymphocyte rec 99.4 8.2E-13 2.8E-17 128.8 10.2 89 808-896 32-120 (170)
139 4fdw_A Leucine rich hypothetic 99.4 1.4E-11 4.8E-16 137.4 19.3 219 138-374 136-359 (401)
140 2r9u_A Variable lymphocyte rec 99.3 2.6E-12 8.8E-17 125.7 10.6 88 808-895 35-122 (174)
141 3g39_A Variable lymphocyte rec 99.3 4.5E-12 1.5E-16 123.6 11.0 109 634-746 11-119 (170)
142 4fs7_A Uncharacterized protein 99.3 2.3E-11 8E-16 136.3 17.5 220 306-546 157-376 (394)
143 4fs7_A Uncharacterized protein 99.3 4E-11 1.4E-15 134.4 18.8 331 279-710 63-393 (394)
144 2r9u_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 121.6 11.0 105 635-743 15-119 (174)
145 3un9_A NLR family member X1; l 99.2 7.1E-13 2.4E-17 146.4 0.2 62 808-869 185-254 (372)
146 2ifg_A High affinity nerve gro 99.1 8.6E-11 2.9E-15 129.4 9.9 83 809-892 34-117 (347)
147 3un9_A NLR family member X1; l 99.1 2.2E-11 7.6E-16 134.5 3.1 114 263-377 72-200 (372)
148 4gt6_A Cell surface protein; l 99.1 4.3E-09 1.5E-13 117.8 21.3 304 416-739 66-388 (394)
149 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.6E-15 126.6 8.6 107 809-917 11-119 (347)
150 4gt6_A Cell surface protein; l 99.1 4.6E-09 1.6E-13 117.6 19.7 129 433-569 260-388 (394)
151 2ra8_A Uncharacterized protein 98.8 6.1E-09 2.1E-13 113.8 7.5 59 652-713 168-227 (362)
152 2ra8_A Uncharacterized protein 98.7 2.1E-08 7E-13 109.6 7.7 103 238-344 107-227 (362)
153 4h09_A Hypothetical leucine ri 98.6 1.4E-06 4.8E-11 96.8 19.0 128 606-738 215-342 (379)
154 4h09_A Hypothetical leucine ri 98.5 7E-06 2.4E-10 91.1 22.0 145 607-758 193-338 (379)
155 3rw6_A Nuclear RNA export fact 98.4 2.5E-07 8.6E-12 95.5 5.2 65 805-871 169-237 (267)
156 3rw6_A Nuclear RNA export fact 98.3 1.3E-07 4.5E-12 97.6 2.7 51 808-860 198-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 6.8E-07 2.3E-11 87.9 5.8 17 357-373 148-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.2 1.5E-06 5E-11 85.5 6.3 90 359-450 64-163 (185)
159 3e4g_A ATP synthase subunit S, 97.6 2.5E-05 8.6E-10 74.5 3.6 83 239-322 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 5.3E-05 1.8E-09 72.3 4.9 82 288-370 62-149 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.8 0.002 6.8E-08 62.6 7.2 83 238-320 41-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0018 6E-08 63.0 6.1 89 359-449 69-168 (197)
163 3rfe_A Platelet glycoprotein I 96.1 0.0062 2.1E-07 55.2 5.3 57 809-867 11-68 (130)
164 3rfe_A Platelet glycoprotein I 95.4 0.025 8.4E-07 51.2 6.5 56 636-693 12-68 (130)
165 2lz0_A Uncharacterized protein 26.8 1.1E+02 0.0039 25.3 5.8 41 624-665 12-52 (100)
166 2lz0_A Uncharacterized protein 25.6 68 0.0023 26.7 4.2 43 645-688 9-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-94 Score=881.95 Aligned_cols=710 Identities=30% Similarity=0.433 Sum_probs=472.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccc---cCcc
Q 035852 31 CVESEREALLSFKQDLEDPSNRLATWIGDGDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGK---INPA 107 (960)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~---i~~~ 107 (960)
+.++|++||++||+++.||. .+++|..+++||.|+||+|+ +|||++|+|++. .+.|. ++++
T Consensus 9 ~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~-------------~l~g~~~~l~~~ 72 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSK-------------PLNVGFSAVSSS 72 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTS-------------CCCEEHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCC-------------CcCCccCccChh
Confidence 46899999999999999998 89999765899999999998 699999999986 77888 9999
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchh--hhcCCCCCcEEeCCCCCCCCCccCCccccc
Q 035852 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPN--QIGNLSNLQYLNLRPNYLGGLYVEDLGWLY 185 (960)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 185 (960)
+.++++|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .++++++|++|++++|.+....+
T Consensus 73 l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------- 143 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK------- 143 (768)
T ss_dssp TTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS-------
T ss_pred HhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC-------
Confidence 999999999999999775 3678999999999999999999999998 89999999999999886542111
Q ss_pred CCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHh---hcCC
Q 035852 186 DLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQ---LYGL 262 (960)
Q Consensus 186 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---l~~l 262 (960)
.. .+.++++|++|++++|.++ +..+.. +.++
T Consensus 144 ----------------------~~-----------------------~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~l 177 (768)
T 3rgz_A 144 ----------------------VS-----------------------GGLKLNSLEVLDLSANSIS-GANVVGWVLSDGC 177 (768)
T ss_dssp ----------------------CC-----------------------SCCCCTTCSEEECCSSCCE-EETHHHHHHTTCC
T ss_pred ----------------------HH-----------------------HhccCCCCCEEECCCCccC-CcCChhhhhhccC
Confidence 11 1133444444444444444 333333 4445
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 342 (960)
++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.++ ..+..+++|++|+
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ 253 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLN 253 (768)
T ss_dssp TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEE
T ss_pred CCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEE
Confidence 5555555555555443332 4455555555555555554444 5555555555555555554444 4455555555555
Q ss_pred CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCC-CCCCEEec
Q 035852 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKF-KVLNSVDL 421 (960)
Q Consensus 343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~L 421 (960)
+++|.+.+.+|.. .+++| ++|++++|.+++.+|..+... ++|++|++
T Consensus 254 Ls~n~l~~~~~~~--~l~~L------------------------------~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 254 ISSNQFVGPIPPL--PLKSL------------------------------QYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp CCSSCCEESCCCC--CCTTC------------------------------CEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred CCCCcccCccCcc--ccCCC------------------------------CEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 5555554444432 33333 333444444444444444332 55555555
Q ss_pred CCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccc-cceEEecccccCC
Q 035852 422 SENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVF-QLEELDLRSCYLG 500 (960)
Q Consensus 422 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~~~l~ 500 (960)
++|.+++.+|..++++++|++|++++|++.|.+|...+..+++|++|++++|+++...+..+..+. +|++|++++|.+.
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 555555555555555555555555555555555544455555555555555544433333222222 3333333333333
Q ss_pred CCCCccccc--CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCC
Q 035852 501 PPFPSWLHS--QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPL 577 (960)
Q Consensus 501 ~~~~~~~~~--~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~ 577 (960)
+.+|..+.. +++|++|++++|++.+.+|..+ ..+++|++|++++|++++.+| .+..+++|+.|++++|.++
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~----- 455 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE----- 455 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC-----
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc-----
Confidence 333333322 3334444444444433333332 233444444444444443333 2333344444444444433
Q ss_pred CCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCC
Q 035852 578 LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSL 657 (960)
Q Consensus 578 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 657 (960)
+.+|. .+..+++|+.|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++
T Consensus 456 ----------------~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 456 ----------------GEIPQ----ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp ----------------SCCCG----GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred ----------------CcCCH----HHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 33332 2234567777777777777777777777777778888877777777777777777
Q ss_pred CcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccc----------------------
Q 035852 658 LRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSN---------------------- 715 (960)
Q Consensus 658 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N---------------------- 715 (960)
|++|+|++|+++|.+|..++++++|++|++++|+++|.+|.+++ ....+..+++..+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh-cccchhhhhcccccccccccccccccccccccccc
Confidence 88888888877777777777777788888888877777777776 3444443333221
Q ss_pred cccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEec
Q 035852 716 KFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLE 795 (960)
Q Consensus 716 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (960)
.+.|..+..+..++.++.++++.|.++|.+|..+++++.
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~----------------------------------------- 633 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS----------------------------------------- 633 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC-----------------------------------------
T ss_pred ccccccchhhhccccccccccccceecccCchhhhcccc-----------------------------------------
Confidence 234455555666666666667777777776666655444
Q ss_pred ccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCC
Q 035852 796 GKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV 875 (960)
Q Consensus 796 ~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~ 875 (960)
|+.||||+|+++|.||.++++++.|+.||||+|+++|.||+.++++++|++||||+|+++|.||..++
T Consensus 634 ------------L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 634 ------------MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp ------------CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ------------ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccccCCcCCCcC
Q 035852 876 NLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLCTVVDE 928 (960)
Q Consensus 876 ~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~ 928 (960)
++++|++||+|+|+++|+||+++||.+|+..+|.|||+|||+|+. +|....+
T Consensus 702 ~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence 999999999999999999999999999999999999999999987 8975543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-72 Score=691.51 Aligned_cols=620 Identities=29% Similarity=0.387 Sum_probs=451.6
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCCcc--ccCCCCCCCEEeCCCCcccCCchhhh-cCCCCCcEEeCCCCCCCCCccCC
Q 035852 104 INPALLDFEHLIYLNLSYNDFKGIQIPR--FLGSMGNLRFLDLSGAGFVGMIPNQI-GNLSNLQYLNLRPNYLGGLYVED 180 (960)
Q Consensus 104 i~~~l~~l~~L~~L~Ls~n~~~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~i~~l~~~~ 180 (960)
+|+.++++++|++|||++|.+++. +|. .++++++|++|+|++|.+.+.+|..+ +++++|++|++++|.+++..+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 458899999999999999999874 787 89999999999999999999988876 89999999999999887654433
Q ss_pred cccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhc
Q 035852 181 LGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLY 260 (960)
Q Consensus 181 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~ 260 (960)
+..+.++++|++|++++|.+++... +..+++|++|++++|.+++.+|. ++++++|++|++++|.++ +.+|..+.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-~~~~~~l~ 244 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-GDFSRAIS 244 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-SCHHHHTT
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-CcccHHHh
Confidence 3336788999999999998876432 37788999999999999888776 888999999999999988 77888888
Q ss_pred CCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCC-CCCCEEeeeCccccccccHHHHhcCCCCC
Q 035852 261 GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKF-SRLEYLSLSSNRLQGRISSVLLENLSSIQ 339 (960)
Q Consensus 261 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~ 339 (960)
.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+| ..++++++|+
T Consensus 245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~ 321 (768)
T 3rgz_A 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLE 321 (768)
T ss_dssp TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCC
T ss_pred cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCcc
Confidence 8999999999999888777765 78888888888888888888877665 888888888888887777 6778888888
Q ss_pred EEeCCCCCCCcccccc-cccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCC-CCC
Q 035852 340 SLDLSFNELEWKIPRS-FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFK-VLN 417 (960)
Q Consensus 340 ~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~ 417 (960)
+|++++|.+.+.+|.. +..+++|++|++ ++|.+++.+|..+..++ +|+
T Consensus 322 ~L~L~~n~l~~~ip~~~l~~l~~L~~L~L------------------------------s~n~l~~~~p~~l~~l~~~L~ 371 (768)
T 3rgz_A 322 SLALSSNNFSGELPMDTLLKMRGLKVLDL------------------------------SFNEFSGELPESLTNLSASLL 371 (768)
T ss_dssp EEECCSSEEEEECCHHHHTTCTTCCEEEC------------------------------CSSEEEECCCTTHHHHTTTCS
T ss_pred EEECCCCcccCcCCHHHHhcCCCCCEEeC------------------------------cCCccCccccHHHHhhhcCCc
Confidence 8888888887777765 777777744444 44444444555555554 566
Q ss_pred EEecCCCcCCCCCcccccC--CCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecc
Q 035852 418 SVDLSENSISGQVPWSLGK--LSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR 495 (960)
Q Consensus 418 ~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 495 (960)
+|++++|.+++.+|..+.. +++|++|++++|++++.+|. .+.++++|+.|++++|.++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~------------------- 431 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS------------------- 431 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE-------------------
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCccc-------------------
Confidence 6666666665555555544 55566666666655555544 3444444444444444433
Q ss_pred cccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCC
Q 035852 496 SCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQ 574 (960)
Q Consensus 496 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~ 574 (960)
+.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|++++|++++.+| .+..+++|++|++++
T Consensus 432 -----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~------ 499 (768)
T 3rgz_A 432 -----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN------ 499 (768)
T ss_dssp -----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS------
T ss_pred -----CcccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC------
Confidence 4445555666666666666666666666543 334555555555555555444 233444344444443
Q ss_pred CCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCC
Q 035852 575 LPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA 654 (960)
Q Consensus 575 ~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 654 (960)
|++++.+|..++.+++|++|++++|+++|.+|..++.
T Consensus 500 -------------------------------------------N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 500 -------------------------------------------NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp -------------------------------------------SCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred -------------------------------------------CccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 3344444444444444444444444444444444444
Q ss_pred CCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCC----------------------cccccCchHHhhcCcccceeee
Q 035852 655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN----------------------EFSGNVPAWIGERFPRMIILIL 712 (960)
Q Consensus 655 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N----------------------~l~g~ip~~~~~~l~~L~~L~L 712 (960)
+++|++|++++|+++|.+|..+..+..+..+++..+ .+.|..|..+. .++.++.+++
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l 615 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNI 615 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh-cccccccccc
Confidence 444444444444444444444444333333322221 24556666665 6888899999
Q ss_pred ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852 713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI 792 (960)
Q Consensus 713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (960)
+.|.+.|.+|..+..+++|+.||+++|+++|.+|.++++++.|
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L------------------------------------- 658 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL------------------------------------- 658 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC-------------------------------------
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC-------------------------------------
Confidence 9999999999999999999999999999999999999887666
Q ss_pred EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852 793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK 872 (960)
Q Consensus 793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 872 (960)
+.||||+|+++|.||.+++++++|+.||||+|+++|.||+.+++++.|+.||||+|+++|.||+
T Consensus 659 ----------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 659 ----------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp ----------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred ----------------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCEEEcccC-cceec
Q 035852 873 NTVNLVFLSHFNISYN-NLSGE 893 (960)
Q Consensus 873 ~l~~l~~L~~l~ls~N-~l~g~ 893 (960)
. +.+..+....+.+| .|+|.
T Consensus 723 ~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 723 M-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp S-SSGGGSCGGGGCSCTEEEST
T ss_pred c-hhhccCCHHHhcCCchhcCC
Confidence 6 34555555567777 47874
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-58 Score=559.77 Aligned_cols=604 Identities=23% Similarity=0.231 Sum_probs=384.8
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182 (960)
Q Consensus 103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~ 182 (960)
++|..+. +++++|+|++|.+++. .+..++++++|++|+|++|.+.+..|..++++++|++|++++|.++.++..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--- 91 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK--- 91 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence 3555443 6888999999888874 556788888899999988888888888888888888888888877654332
Q ss_pred cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262 (960)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 262 (960)
.+.++++|++|++++|+++++++..|+++++|++|++++|.++ +..+..++++
T Consensus 92 --------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l 144 (680)
T 1ziw_A 92 --------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQL 144 (680)
T ss_dssp --------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCC
T ss_pred --------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhccc
Confidence 2344555555555555555555555566666666666666555 4444555556
Q ss_pred CCCCEEeccCcccCCCCccccc--CCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHH--HhcCCCC
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQ--NWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVL--LENLSSI 338 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~--l~~l~~L 338 (960)
++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+...... ....++|
T Consensus 145 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L 224 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224 (680)
T ss_dssp TTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCC
T ss_pred ccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccc
Confidence 6666666666666555444433 34566666666666666666666666666666666665543221100 0134667
Q ss_pred CEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCE
Q 035852 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNS 418 (960)
Q Consensus 339 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 418 (960)
++|++++|.+.+..|..+..++. ++|++|++++|.+++..+..++.+++|++
T Consensus 225 ~~L~L~~n~l~~~~~~~~~~l~~----------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (680)
T 1ziw_A 225 RNLSLSNSQLSTTSNTTFLGLKW----------------------------TNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276 (680)
T ss_dssp CEEECTTSCCCEECTTTTGGGGG----------------------------SCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cEEEccCCcccccChhHhhccCc----------------------------CCCCEEECCCCCcCccCcccccCcccccE
Confidence 77777777776666665554432 12366666666666666667777788888
Q ss_pred EecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEeccccc
Q 035852 419 VDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCY 498 (960)
Q Consensus 419 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~ 498 (960)
|++++|.+++..|..+..+++|++|++++|...+.++.. .++ .....
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~---~lp-------------~i~~~----------------- 323 (680)
T 1ziw_A 277 FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA---SLP-------------KIDDF----------------- 323 (680)
T ss_dssp EECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---------CC-------------EECTT-----------------
T ss_pred eeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc---ccc-------------ccChh-----------------
Confidence 888888887777777777888888888776554332210 111 01111
Q ss_pred CCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccccc-CC--CccccCCCCeEEcccCcCcCCC
Q 035852 499 LGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE-IP--NLTEVSQLGTLDLSANNLSGQL 575 (960)
Q Consensus 499 l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~--~l~~l~~L~~L~Ls~n~l~~~~ 575 (960)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+... ++ .+..+
T Consensus 324 -------~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~----------------- 378 (680)
T 1ziw_A 324 -------SFQWLKCLEHLNMEDNDIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL----------------- 378 (680)
T ss_dssp -------TTTTCTTCCEEECCSCCBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGG-----------------
T ss_pred -------hcccCCCCCEEECCCCccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhccc-----------------
Confidence 22334444444444444433222 2223344444444444433211 00 00000
Q ss_pred CCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCC-cCcCC
Q 035852 576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP-TSLGA 654 (960)
Q Consensus 576 p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~ 654 (960)
..+.|+.+++++|++++..|..+..+++|++|++++|++++.+| ..+.+
T Consensus 379 ------------------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 379 ------------------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428 (680)
T ss_dssp ------------------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTT
T ss_pred ------------------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccC
Confidence 02355666666666666666777777777777777777776555 56777
Q ss_pred CCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc--ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852 655 LSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS--GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK 732 (960)
Q Consensus 655 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~--g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 732 (960)
+++|++|++++|++++..+..|..+++|+.|++++|.+. +.+|..+. .+++|+.|++++|++++..|..+..+++|+
T Consensus 429 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp CTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 777788888887777777777777778888888877775 45666665 677888888888888777677777888888
Q ss_pred eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID 812 (960)
Q Consensus 733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 812 (960)
.|++++|++++..+..+..- ...+...+++|+.|+
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGG---------------------------------------------PIYFLKGLSHLHILN 542 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTS---------------------------------------------CCCTTTTCTTCCEEE
T ss_pred EEeCCCCCccccchhhccCC---------------------------------------------cchhhcCCCCCCEEE
Confidence 88888888764322211100 000112345568888
Q ss_pred ccCCcccccCch-hhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCC-CCCCCCEEEcccCcc
Q 035852 813 LSNNKFSGEIPA-EITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTV-NLVFLSHFNISYNNL 890 (960)
Q Consensus 813 Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~l~ls~N~l 890 (960)
|++|+++ .||. .++++++|+.|||++|++++..|..|..+++|+.|||++|++++.+|..+. .+++|+.+++++|++
T Consensus 543 L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 543 LESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 8888888 5554 578888888888888888876666678888888888888888887777666 678888888888888
Q ss_pred eecCCCCcccCC
Q 035852 891 SGEVPDEAQFAT 902 (960)
Q Consensus 891 ~g~iP~~~~~~~ 902 (960)
.+..+....|..
T Consensus 622 ~c~c~~~~~~~~ 633 (680)
T 1ziw_A 622 DCTCESIAWFVN 633 (680)
T ss_dssp CBCCCCCSSEEC
T ss_pred ccCCccHHHHHH
Confidence 876654233433
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.7e-56 Score=541.00 Aligned_cols=575 Identities=22% Similarity=0.227 Sum_probs=351.3
Q ss_pred CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEe
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLS 317 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 317 (960)
+++++|++++|.++ +..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 34555555555544 33334455555555555555555554555555555555555555555544344455555555555
Q ss_pred eeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852 318 LSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397 (960)
Q Consensus 318 L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 397 (960)
+++|.+++ ++...++++++|++|++++|.+++..|..+..+++|++|++++|.++......+.. ...+.|++|++
T Consensus 104 L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----~~~~~L~~L~L 178 (680)
T 1ziw_A 104 LMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI----FANSSLKKLEL 178 (680)
T ss_dssp CCSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG----GTTCEESEEEC
T ss_pred CCCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc----cccccccEEEC
Confidence 55555542 22244555555555555555555555555555555544444444443322221110 01123456666
Q ss_pred CCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCccccc---CCCCCcEEecCCcccccccchhhhcCCCC--CcEeeccC
Q 035852 398 SNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLG---KLSSLRYLDISNNQLNGTVSEIHFANLSS--LTFFYASR 472 (960)
Q Consensus 398 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~i~~~~~~~l~~--L~~L~l~~ 472 (960)
++|.+++..|..+..+++|+.+++.++.+.+.....+. ..++|+.|++++|.+.+..+. .+..++. |+.|++++
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTT
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCC
Confidence 66666555555566666666666665554422111110 124555555555555543332 3333332 55555554
Q ss_pred ccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852 473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552 (960)
Q Consensus 473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 552 (960)
|.++...+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|...+.++.. .+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--------------------~l 317 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA--------------------SL 317 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--------------------------C
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc--------------------cc
Confidence 4444444334444444444444444444433434444444444444333222111000 11
Q ss_pred C-----CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCC--CC
Q 035852 553 P-----NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE--IP 625 (960)
Q Consensus 553 ~-----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p 625 (960)
| .+..+++|++|++++|.+++..+. .+.++++|+.|++++|.+.+. .+
T Consensus 318 p~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~Ls~n~~~~~~l~~ 372 (680)
T 1ziw_A 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-------------------------MFTGLINLKYLSLSNSFTSLRTLTN 372 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBCCCCTT-------------------------TTTTCTTCCEEECTTCBSCCCEECT
T ss_pred cccChhhcccCCCCCEEECCCCccCCCChh-------------------------HhccccCCcEEECCCCchhhhhcch
Confidence 1 233344444444444444433322 223355555556555553321 12
Q ss_pred CcccC--CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhh
Q 035852 626 DCWMN--WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGE 702 (960)
Q Consensus 626 ~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 702 (960)
..+.. .++|++|++++|++++..|..+..+++|+.|++++|++++.+| ..|.++++|++|++++|++++..+..+.
T Consensus 373 ~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~- 451 (680)
T 1ziw_A 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA- 451 (680)
T ss_dssp TTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-
T ss_pred hhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-
Confidence 22332 2579999999999998888899999999999999999988776 6788999999999999999866666655
Q ss_pred cCcccceeeecccccc--ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852 703 RFPRMIILILRSNKFH--GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF 780 (960)
Q Consensus 703 ~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (960)
.+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..++.
T Consensus 452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~-------------------------- 505 (680)
T 1ziw_A 452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-------------------------- 505 (680)
T ss_dssp TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------
T ss_pred cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc--------------------------
Confidence 7899999999999887 678888999999999999999998766666655544
Q ss_pred ccccccccceEEEecccchhhhhhhccccEEEccCCcccccC----c----hhhhhhcccceeecCcccCcccCchhhcc
Q 035852 781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEI----P----AEITVLRELRSLNLSHNFFSGRIPENIGA 852 (960)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~i----p----~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~ 852 (960)
|+.|+|++|++++.. | ..++++++|+.|+|++|+++...+..|++
T Consensus 506 ---------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 506 ---------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp ---------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ---------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 489999999998642 2 24789999999999999999443446899
Q ss_pred CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCc--ccCCCCccccCCCCCccCcc
Q 035852 853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA--QFATFDSSSYIGDEYLCGPV 918 (960)
Q Consensus 853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~ 918 (960)
+++|+.|||++|++++..|..+.++++|+.|++++|++++..|... .+.++....+.|||..|..+
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999999997666778999999999999999998766532 46677777789999999765
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.3e-52 Score=499.22 Aligned_cols=535 Identities=19% Similarity=0.154 Sum_probs=388.4
Q ss_pred cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852 241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 320 (960)
+.++.++..++ .+|..+. ..+++|++++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~--~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN--EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS--SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcc--cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 46677776664 3555443 3677888888887776677777788888888888777777777777777777777777
Q ss_pred ccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCC
Q 035852 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNT 400 (960)
Q Consensus 321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 400 (960)
|++++..| ..++++++|++|++++|.+++..+..++.+++| ++|++++|
T Consensus 91 n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L------------------------------~~L~L~~n 139 (606)
T 3t6q_A 91 NPLIFMAE-TALSGPKALKHLFFIQTGISSIDFIPLHNQKTL------------------------------ESLYLGSN 139 (606)
T ss_dssp CCCSEECT-TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC------------------------------CEEECCSS
T ss_pred CcccccCh-hhhcccccccEeeccccCcccCCcchhccCCcc------------------------------cEEECCCC
Confidence 77775444 567777777777777777776555666666666 44555555
Q ss_pred CCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCc--EEecCCcccccccchhhhcCCCCCcEeeccCcccccc
Q 035852 401 TLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLR--YLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLK 478 (960)
Q Consensus 401 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~ 478 (960)
.+++.....+..+++|++|++++|.+++..|..+..+++|+ .|++++|.+.+..+. .+ ...+|+.+++++|.....
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~ 217 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AF-DSAVFQSLNFGGTQNLLV 217 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TT-TTCEEEEEECTTCSCHHH
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh-Hh-hhccccccccCCchhHHH
Confidence 55542222333477788888888887777677777777777 777777777755443 23 335666666666541100
Q ss_pred CCCCCcccc--cceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCC--cccEEEccCccccccCC-
Q 035852 479 ANPNWVPVF--QLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSIT--QFNYLSLSNNQIHGEIP- 553 (960)
Q Consensus 479 ~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~- 553 (960)
.+..+. .++.+.+..+.- +. ...++...+..+. +|+.|++++|.+++..+
T Consensus 218 ---~~~~l~~~~l~~l~~~~~~~-------------~~---------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 218 ---IFKGLKNSTIQSLWLGTFED-------------MD---------DEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp ---HHHHTTTCEEEEEECCCCTT-------------SC---------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ---Hhhhccccchhheechhhcc-------------cc---------ccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 011111 122222211100 00 0122222222222 56666666666665555
Q ss_pred CccccCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCc-cc
Q 035852 554 NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDC-WM 629 (960)
Q Consensus 554 ~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~ 629 (960)
.+..+++|++|++++|.++ .+|.. +++|++|++++|++.+..| ..+.++++|+.|++++|.+.+.+|.. +.
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ----ISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG----GCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch----hhhhccCcCCEEECCCCCcccccchhhhh
Confidence 3666666777777777666 33332 3566777777777665433 23455788999999999988777654 88
Q ss_pred CCCcccEEECCCCccccCC--CcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 630 NWRYLLVLRLDNNKFTGKL--PTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
.+++|++|++++|++++.. |..++.+++|++|++++|++.+..|..+..+++|++|++++|++++..|...+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 9999999999999998765 77899999999999999999988899999999999999999999987776544479999
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc-C--ccccccccchhccCCCCcccccCCCCCCCCCCcccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI-P--TCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE 784 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i-p--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (960)
++|++++|++.+..|..+..+++|+.|++++|++++.. | ..+..
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~--------------------------------- 474 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT--------------------------------- 474 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG---------------------------------
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc---------------------------------
Confidence 99999999999999999999999999999999997632 2 22332
Q ss_pred ccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCC
Q 035852 785 QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSN 864 (960)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 864 (960)
+++|+.|+|++|++++.+|..++.+++|+.|||++|++++.+|+.+++++.| .||+++|
T Consensus 475 --------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 475 --------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp --------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred --------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 3456899999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852 865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 865 ~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
++++.+|..+..+++|+.+++++|++.+..|.
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999898899999999999999999987663
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.1e-52 Score=497.93 Aligned_cols=533 Identities=18% Similarity=0.178 Sum_probs=334.1
Q ss_pred eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852 192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls 271 (960)
.++.++..++.++.. + .+.+++|++++|.++++.+..|.++++|++|++++|.++ +..|..|.++++|++|+++
T Consensus 16 ~~~c~~~~l~~iP~~---l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT---L--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCSSCCTT---S--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred eEECCCCCcccCcCC---C--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCC
Confidence 455555555544321 1 124555555555555555555555555555555555554 4444455555555555555
Q ss_pred CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852 272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK 351 (960)
Q Consensus 272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 351 (960)
+|++++..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+... ..+..+++|++|++++|.+++
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~- 167 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHY- 167 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCE-
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-ccccCCcccCEEEcccCcccc-
Confidence 555554445555555555555555555554444444445555555555554442111 112224444444444444443
Q ss_pred cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCC--EEecCCCcCCCC
Q 035852 352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLN--SVDLSENSISGQ 429 (960)
Q Consensus 352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~ 429 (960)
..+..++.+++|+ +|++++|.+++.
T Consensus 168 -----------------------------------------------------~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 168 -----------------------------------------------------LSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp -----------------------------------------------------ECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred -----------------------------------------------------cChhhhhhhcccceeEEecCCCccCcc
Confidence 3344444444444 455555555544
Q ss_pred CcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccc-----cCCCCCcccc--cceEEecccccCCCC
Q 035852 430 VPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTL-----KANPNWVPVF--QLEELDLRSCYLGPP 502 (960)
Q Consensus 430 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~--~L~~L~l~~~~l~~~ 502 (960)
.|..+. ..+|++|++++|.. ++. .+..+..+....+....+.. .....+..+. +++.+++++|.+.+.
T Consensus 195 ~~~~~~-~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 195 EPGAFD-SAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CTTTTT-TCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ChhHhh-hccccccccCCchh---HHH-HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 433322 23455555555541 111 22233333222222111111 0111111111 566666666666666
Q ss_pred CCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCCCcc
Q 035852 503 FPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLLASN 581 (960)
Q Consensus 503 ~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 581 (960)
.+..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..| .+..+++|++|++++|.+.+.+|.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---- 343 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT---- 343 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS----
T ss_pred CHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch----
Confidence 5555666666666666666554 444432 345566666666666555444 455555555555555555443332
Q ss_pred CcEEEcccccccccccchhhcccCCCCcccEEecccccccCCC--CCcccCCCcccEEECCCCccccCCCcCcCCCCCCc
Q 035852 582 VMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEI--PDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659 (960)
Q Consensus 582 L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 659 (960)
..+..+++|+.|++++|.+++.. |..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 344 --------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 344 --------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp --------------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred --------------------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 12345677788888888777665 67788889999999999999888888899999999
Q ss_pred EEECCCCeecccCCcC-CcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc---CchhhcCCCCCCeEe
Q 035852 660 SLHLRNNNLSGTLPVS-LGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV---FPLELCHLAFLKILV 735 (960)
Q Consensus 660 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~---~p~~l~~l~~L~~L~ 735 (960)
+|++++|++++..|.. +..+++|++|++++|++++..|..+. .+++|++|++++|++++. .+..+..+++|+.|+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 9999999998776654 88899999999999999877777766 789999999999998863 335688899999999
Q ss_pred ecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852 736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815 (960)
Q Consensus 736 Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 815 (960)
+++|++++..|..++.++.| +.|||++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L-----------------------------------------------------~~L~Ls~ 509 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMM-----------------------------------------------------NHVDLSH 509 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTC-----------------------------------------------------CEEECCS
T ss_pred CCCCccCccChhhhccccCC-----------------------------------------------------CEEECCC
Confidence 99999998888777666554 8999999
Q ss_pred CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
|++++.+|+.+.+++.| .|||++|++++.+|+.++.+++|+.|++++|++++..+
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999999999999999 99999999999999999999999999999999998665
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-54 Score=513.34 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHhhhcCCCCC--------CCCCCCCCCCCCccc---cceeeCCCCCceEEEeCCCCCCcCCCcccccccc
Q 035852 31 CVESEREALLSFKQDLEDPS--------NRLATWIGDGDCCKW---AGVICDNFTGHVLELHLGNPWEDDHGHQAKESSA 99 (960)
Q Consensus 31 ~~~~~~~~ll~~k~~~~~~~--------~~l~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 99 (960)
....|++||.++|.++.++. ...++|..+++||.| +||+|+.. |||++|+|++. .
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~-------------~ 92 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGF-------------G 92 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTS-------------C
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCc-------------c
Confidence 34579999999999986442 124589866899999 99999864 99999999996 8
Q ss_pred cccccCccccCCCCCCEEeCCCCCCCCC-----------CCccccCCCCCCCEEeCCCCcccCCchhhhc
Q 035852 100 LVGKINPALLDFEHLIYLNLSYNDFKGI-----------QIPRFLGSMGNLRFLDLSGAGFVGMIPNQIG 158 (960)
Q Consensus 100 ~~g~i~~~l~~l~~L~~L~Ls~n~~~~~-----------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 158 (960)
+.|.+|++++++++|++|+|++|.+... .+|... +.+|+ ++++++.+.+.+|..+.
T Consensus 93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSC
T ss_pred cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHH
Confidence 8999999999999999999999976211 123222 34455 55555555555554443
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-52 Score=499.88 Aligned_cols=542 Identities=20% Similarity=0.187 Sum_probs=366.1
Q ss_pred cceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEe
Q 035852 190 LENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLD 269 (960)
Q Consensus 190 L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 269 (960)
.++++.+++.++.++.. + .+++++|++++|.+++.++..|.++++|++|++++|.++ +..|..|.++++|++|+
T Consensus 13 ~~~~~c~~~~l~~ip~~---~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~ 86 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDD---I--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLI 86 (606)
T ss_dssp TTEEECTTSCCSSCCTT---S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCceEccCCCcccCCCC---C--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeE
Confidence 35677888777776432 1 267888888888888877777888888888888888776 55666777788888888
Q ss_pred ccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc-cccHHHHhcCCCCCEEeCCCCCC
Q 035852 270 LSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG-RISSVLLENLSSIQSLDLSFNEL 348 (960)
Q Consensus 270 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~Ls~n~l 348 (960)
+++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+| ..++++++|++|++++|.+
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcc
Confidence 88888777777777788888888888887777666667777777777777777764 455 5667777777777777777
Q ss_pred CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC-
Q 035852 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS- 427 (960)
Q Consensus 349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~- 427 (960)
++..+..++.+++|+. .++++++++|.+++..+..+.. .+|++|++++|.++
T Consensus 166 ~~~~~~~~~~l~~L~~--------------------------~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~ 218 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQ--------------------------VNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSS 218 (606)
T ss_dssp CEECTTTTHHHHHCTT--------------------------CCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCH
T ss_pred eecChhhhhhhhcccc--------------------------ccceeeccCCCcceeCcccccC-ceeeeeeccCCccch
Confidence 6655555554444310 1245555555555333332322 25555555555554
Q ss_pred CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCccc
Q 035852 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL 507 (960)
Q Consensus 428 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 507 (960)
+.+|..+.+++.|+.+++..+.+.+.. .+.. ..+..+
T Consensus 219 ~~~~~~~~~l~~L~~l~l~~~~~~~~~---------~l~~----------------------------------~~~~~~ 255 (606)
T 3vq2_A 219 NIMKTCLQNLAGLHVHRLILGEFKDER---------NLEI----------------------------------FEPSIM 255 (606)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSC---------CCSC----------------------------------CCGGGG
T ss_pred hHHHHHhccccccccccccccccccCC---------cccc----------------------------------cChHHh
Confidence 233444445555555444333222100 0000 000001
Q ss_pred ccCc--cCcEEec-cCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcE
Q 035852 508 HSQN--HLVNLDI-SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMV 584 (960)
Q Consensus 508 ~~~~--~L~~L~L-s~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~ 584 (960)
..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. +|.+..+++|++|++++|.+ +.+|.
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l-~~lp~------- 324 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQL-KQFPT------- 324 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCC-SSCCC-------
T ss_pred hhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhccccccCCEEEcccccC-ccccc-------
Confidence 0100 2233333 23333333333 3344455555555554432 23444444444444444444 22221
Q ss_pred EEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccC--CCcCcCCCCCCcEEE
Q 035852 585 LDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK--LPTSLGALSLLRSLH 662 (960)
Q Consensus 585 L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~ 662 (960)
+ .++.|+.|++++|+..+.+ .+..+++|++|++++|++++. +|..+..+++|++|+
T Consensus 325 -------------------~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 382 (606)
T 3vq2_A 325 -------------------L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382 (606)
T ss_dssp -------------------C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEE
T ss_pred -------------------C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeE
Confidence 1 3556666666666544433 456778888888888888765 477778888888888
Q ss_pred CCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742 (960)
Q Consensus 663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 742 (960)
+++|.+++ +|..+..+++|++|++++|++++..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|+++
T Consensus 383 L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 383 LSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp CCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC
Confidence 88888874 66788888888888888888887766333337888888888888888888888889999999999999998
Q ss_pred cc-cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccccc
Q 035852 743 GT-IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE 821 (960)
Q Consensus 743 g~-ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ 821 (960)
+. +|..++.++.| +.|+|++|++++.
T Consensus 462 ~~~~~~~~~~l~~L-----------------------------------------------------~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 462 DNTLSNVFANTTNL-----------------------------------------------------TFLDLSKCQLEQI 488 (606)
T ss_dssp GGEECSCCTTCTTC-----------------------------------------------------CEEECTTSCCCEE
T ss_pred CcchHHhhccCCCC-----------------------------------------------------CEEECCCCcCCcc
Confidence 74 67666655544 8999999999999
Q ss_pred CchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCC-CCCEEEcccCcceecCCC
Q 035852 822 IPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLV-FLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 822 ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~l~ls~N~l~g~iP~ 896 (960)
+|..++++++|+.|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999999999999999999999999999999999998 7888888886 699999999999887664
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.1e-52 Score=497.92 Aligned_cols=536 Identities=17% Similarity=0.166 Sum_probs=413.3
Q ss_pred CcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcE
Q 035852 163 LQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVT 242 (960)
Q Consensus 163 L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 242 (960)
-++++.+++.++.++... .+++++|++++|.++++. +..+.++++|++|++++|.++++.|..|.++++|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~------~~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI------PSSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTS------CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceEccCCCcccCCCCC------CCCcCEEECCCCCcCEeC--hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 468999999888776532 278999999999998763 446889999999999999999999999999999999
Q ss_pred EeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCC-cchhhhcCCCCCCEEeeeCc
Q 035852 243 LDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSY-LIPEWLNKFSRLEYLSLSSN 321 (960)
Q Consensus 243 L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n 321 (960)
|++++|.++ +..|..++++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus 85 L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 85 LILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp EECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred eECCCCccc-ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 999999998 6778999999999999999999998877889999999999999999986 56999999999999999999
Q ss_pred cccccccHHHHhcCCCCC----EEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEc
Q 035852 322 RLQGRISSVLLENLSSIQ----SLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDL 397 (960)
Q Consensus 322 ~l~~~i~~~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~L 397 (960)
++++..+ ..++.+++|+ +|++++|.+++..+..+... +| +.|++
T Consensus 164 ~l~~~~~-~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L------------------------------~~L~L 211 (606)
T 3vq2_A 164 YIQTITV-NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL------------------------------HELTL 211 (606)
T ss_dssp CCCEECT-TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE------------------------------EEEEE
T ss_pred cceecCh-hhhhhhhccccccceeeccCCCcceeCcccccCc-ee------------------------------eeeec
Confidence 9986544 5566666554 89999999985544444332 34 77888
Q ss_pred CCCCCC-CchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCC--CCcEeec-cCc
Q 035852 398 SNTTLS-GSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLS--SLTFFYA-SRN 473 (960)
Q Consensus 398 s~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~--~L~~L~l-~~n 473 (960)
++|.++ +..|..+.+++.|+.+++..+.+.+.. .+.. ++...+..+. .++.+++ ..+
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~-----------~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEI-----------FEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSC-----------CCGGGGTTGGGSEEEEEEECCCT
T ss_pred cCCccchhHHHHHhccccccccccccccccccCC--------cccc-----------cChHHhhhhhhccHhheeccccc
Confidence 888776 467888999999999988765544221 1110 0111111111 1222333 222
Q ss_pred cccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC
Q 035852 474 SLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP 553 (960)
Q Consensus 474 ~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 553 (960)
.+. +..|. +..+++|+.|++++|.+ ..+| .+..+++|++|++++|.+ +.+|
T Consensus 273 ~~~------------------------~~~~~-~~~l~~L~~L~l~~~~~-~~l~--~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 273 DFS------------------------DDIVK-FHCLANVSAMSLAGVSI-KYLE--DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp TCC------------------------GGGGS-CGGGTTCSEEEEESCCC-CCCC--CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccc------------------------ccccc-cccCCCCCEEEecCccc-hhhh--hccccccCCEEEcccccC-cccc
Confidence 222 22222 34444444444444444 2233 233455666666666666 4555
Q ss_pred CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCC--CCCcccCC
Q 035852 554 NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGE--IPDCWMNW 631 (960)
Q Consensus 554 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~l~~l 631 (960)
.+ .+++|+.|++++|...+.++ +..+++|+.|++++|++++. +|..+..+
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~~---------------------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISFK---------------------------KVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEECC---------------------------CCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cC-CCCccceeeccCCcCccchh---------------------------hccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 55 66666666666664332221 22355666666666666654 47778888
Q ss_pred CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIIL 710 (960)
Q Consensus 632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L 710 (960)
++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|++|++++|++++.+|..+. .+++|++|
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-GLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-CCCCCCEE
Confidence 999999999999884 67888999999999999999998877 6888999999999999999988887776 79999999
Q ss_pred eeccccccc-cCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852 711 ILRSNKFHG-VFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789 (960)
Q Consensus 711 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (960)
++++|++++ .+|..+..+++|+.|++++|++++..|..+++++.|
T Consensus 454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------------------- 499 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL---------------------------------- 499 (606)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------
T ss_pred ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------------------
Confidence 999999998 478889999999999999999998888877766554
Q ss_pred eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCC-CCCEEECcCCcccc
Q 035852 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA-LLESLDFSSNRLEG 868 (960)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~-~L~~L~Ls~N~l~g 868 (960)
+.|+|++|++++.+|..++++++|+.|||++|+++ .+|+.+..++ +|+.|++++|.+.+
T Consensus 500 -------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 500 -------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp -------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred -------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 89999999999999999999999999999999999 6888899997 59999999999998
Q ss_pred cCC
Q 035852 869 EIP 871 (960)
Q Consensus 869 ~iP 871 (960)
..|
T Consensus 560 ~c~ 562 (606)
T 3vq2_A 560 ICE 562 (606)
T ss_dssp SST
T ss_pred CCc
Confidence 665
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-50 Score=499.10 Aligned_cols=567 Identities=21% Similarity=0.191 Sum_probs=393.6
Q ss_pred eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852 192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls 271 (960)
..+.++++++.++. ..++|++|+|++|.+++..+..|.++++|++|++++|.......|..+.++++|++|+|+
T Consensus 8 ~~dcs~~~L~~vP~------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEESCCCSSCCCS------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEccCCCCCCCCC------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 45555666666542 346788888888888888888888889999999988866523337788888889999998
Q ss_pred CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhh--hcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCC
Q 035852 272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEW--LNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELE 349 (960)
Q Consensus 272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~ 349 (960)
+|.+.+..|..|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+++..+...++++++|++|++++|.++
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 88888888888888888899999888888766554 7888888888888888876554356788888888888888888
Q ss_pred cccccccccC--CCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCC------CCEEec
Q 035852 350 WKIPRSFSRF--CNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKV------LNSVDL 421 (960)
Q Consensus 350 ~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~------L~~L~L 421 (960)
+..+..+..+ ++|+.|++++| .+.+..|..++.+++ |+.|++
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n------------------------------~l~~~~~~~~~~~~~~~~~~~L~~L~L 211 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAAN------------------------------SLYSRVSVDWGKCMNPFRNMVLEILDV 211 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCS------------------------------BSCCCCCCCCCSSSCTTTTCCBSEEBC
T ss_pred eeCHHHcccccCCccceEECCCC------------------------------ccccccccchhhcCCccccCceeEEec
Confidence 7777776665 56644444444 444444433333333 667777
Q ss_pred CCCcCCCCCcccccCC---CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcc--cccceEEeccc
Q 035852 422 SENSISGQVPWSLGKL---SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP--VFQLEELDLRS 496 (960)
Q Consensus 422 ~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~l~~ 496 (960)
++|.+++.++..+... ++++.+.+..+...... ..+.+.......+.. ..+|++|++++
T Consensus 212 s~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred CCCcCchhHHHHHHhhcCcccccceecccccccccc----------------cccccCCCChhhhhccccCCccEEECCC
Confidence 7776666666555432 45566666543322110 111122222222222 25677777777
Q ss_pred ccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCC
Q 035852 497 CYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLP 576 (960)
Q Consensus 497 ~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 576 (960)
|.+.+..+..+..+++|+.|++++|++.+..|.. +..+++|++|++++|.+++..+
T Consensus 276 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~----------------------- 331 (844)
T 3j0a_A 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYS----------------------- 331 (844)
T ss_dssp CCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCS-----------------------
T ss_pred CcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCH-----------------------
Confidence 7777777777888888888888888775544432 3445555555555555443332
Q ss_pred CCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCC
Q 035852 577 LLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALS 656 (960)
Q Consensus 577 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 656 (960)
. .+.++++|+.|++++|++.+..+..+..+++|++|++++|.+++ ++ .++
T Consensus 332 ~-------------------------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~ 381 (844)
T 3j0a_A 332 S-------------------------NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIP 381 (844)
T ss_dssp C-------------------------SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCC
T ss_pred H-------------------------HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCC
Confidence 1 12234556666666666666666677788888888888888873 22 377
Q ss_pred CCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCch-hhcCCCCCCeEe
Q 035852 657 LLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL-ELCHLAFLKILV 735 (960)
Q Consensus 657 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~ 735 (960)
+|+.|++++|+++ .+|.. ..+++.|++++|++++.-.......+++|+.|++++|++++..+. .+..+++|+.|+
T Consensus 382 ~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~ 457 (844)
T 3j0a_A 382 SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457 (844)
T ss_dssp SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE
T ss_pred CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc
Confidence 8888899988888 55654 467889999999998532222223789999999999999865443 355688999999
Q ss_pred ecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccC
Q 035852 736 LAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSN 815 (960)
Q Consensus 736 Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 815 (960)
+++|.+++..+..+.. .....+++|+.|||++
T Consensus 458 Ls~N~l~~~~~~~~~~------------------------------------------------~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 458 LGENMLQLAWETELCW------------------------------------------------DVFEGLSHLQVLYLNH 489 (844)
T ss_dssp EESCCCSSSCCSCCCS------------------------------------------------SCSSCBCCEECCCCCH
T ss_pred CCCCccccccccccch------------------------------------------------hhhcCcccccEEECCC
Confidence 9999997433321100 0001234568999999
Q ss_pred CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852 816 NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 816 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP 895 (960)
|++++.+|..++.+++|+.|||++|++++..|..+. ++|+.|||++|+++|.+|..+. .|+.+++++|++.+..+
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 999999999999999999999999999987776665 8999999999999999998764 78899999999988765
Q ss_pred CCcccCCCCccccCCCCCccCccccCCcCC
Q 035852 896 DEAQFATFDSSSYIGDEYLCGPVLKKLCTV 925 (960)
Q Consensus 896 ~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~ 925 (960)
. ..|..-...+|..+||.+....|..
T Consensus 565 ~----~~f~~~~~~~~~~~~~~~~~~~C~~ 590 (844)
T 3j0a_A 565 L----STFINWLNHTNVTIAGPPADIYCVY 590 (844)
T ss_dssp C----CSHHHHHHHTTTTTCCCGGGCCCSS
T ss_pred c----HHHHHHHHhcCcccccccccCccCC
Confidence 3 2222222345667788776667754
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.4e-50 Score=488.11 Aligned_cols=331 Identities=15% Similarity=0.249 Sum_probs=195.4
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCC-----CC--ccc------------cceeeCCCCCceEEEeCCCCCCc
Q 035852 28 YVGCVESEREALLSFKQDLEDPSNRLATWIGDG-----DC--CKW------------AGVICDNFTGHVLELHLGNPWED 88 (960)
Q Consensus 28 ~~~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~ 88 (960)
...+..+|++||++||+++.+| +|+.+. +| |.| .||+|+. .+||++|+|++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--- 333 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--- 333 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT---
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC---
Confidence 3445678999999999999877 785422 55 999 9999986 799999999996
Q ss_pred CCCcccccccccccccCccccCCCCCCEEeC-CCCCCCCCCCccccCCC-CCCCE--------------Ee-CCCCcccC
Q 035852 89 DHGHQAKESSALVGKINPALLDFEHLIYLNL-SYNDFKGIQIPRFLGSM-GNLRF--------------LD-LSGAGFVG 151 (960)
Q Consensus 89 ~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~L-s~n~~~~~~~p~~l~~l-~~L~~--------------L~-Ls~n~l~~ 151 (960)
.+.|.+|++++++++|++|+| ++|.+.|. .|...... ..+.. ++ .....+.+
T Consensus 334 ----------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 334 ----------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp ----------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred ----------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 899999999999999999999 88877653 22111100 00000 00 00011122
Q ss_pred CchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC
Q 035852 152 MIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP 231 (960)
Q Consensus 152 ~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 231 (960)
.++..+...+........ +.+. ++.+.+.. ..|++++ +|
T Consensus 403 l~~~~l~~~~~~~~i~~~-~~l~---------------l~~l~l~~------------------------~~N~L~~-IP 441 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKD-SRIS---------------LKDTQIGN------------------------LTNRITF-IS 441 (876)
T ss_dssp HHHHHHHTCTTSCCCCCC-CCCC---------------CCTTTTTC------------------------CSCEEEE-EC
T ss_pred HHHHHhhhCccccccccc-cccc---------------hhhceecc------------------------ccCcccc-hh
Confidence 222222211111111100 0000 00011110 1133344 33
Q ss_pred CCccCCCCCcEEeCCCCCCCC----------------ChhHHhhc--CCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852 232 LSVANFSSLVTLDLSHNQFDN----------------SLIATQLY--GLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293 (960)
Q Consensus 232 ~~l~~l~~L~~L~Ls~n~l~~----------------~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 293 (960)
..++++++|++|+|++|.+++ +.+|+.++ ++++|++|+|++|++.+.+|..++++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 445555555555555555541 23666665 777777777777777777777777777777777
Q ss_pred CCCCc-CCC-cchhhhcCCC-------CCCEEeeeCccccccccH-HHHhcCCCCCEEeCCCCCCCcccccccccCCCCC
Q 035852 294 LSSNH-FSY-LIPEWLNKFS-------RLEYLSLSSNRLQGRISS-VLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLR 363 (960)
Q Consensus 294 Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~i~~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 363 (960)
+++|+ +++ .+|..+++++ +|+.|++++|.++ .+|. ..++++++|++|++++|.++ .+| .++.+++|
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L- 597 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL- 597 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE-
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc-
Confidence 77776 666 6666555444 6666777666666 5662 15666666666666666666 555 45544444
Q ss_pred EEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCC-CCEEecCCCcCCCCCcccccCCCC--C
Q 035852 364 SISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKV-LNSVDLSENSISGQVPWSLGKLSS--L 440 (960)
Q Consensus 364 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L 440 (960)
+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |
T Consensus 598 -----------------------------~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 598 -----------------------------TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp -----------------------------SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred -----------------------------eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 44555555555 45555666666 666666666666 55655554433 6
Q ss_pred cEEecCCccccccc
Q 035852 441 RYLDISNNQLNGTV 454 (960)
Q Consensus 441 ~~L~L~~n~l~~~i 454 (960)
+.|++++|++.+.+
T Consensus 647 ~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 647 GSVDFSYNKIGSEG 660 (876)
T ss_dssp EEEECCSSCTTTTS
T ss_pred CEEECcCCcCCCcc
Confidence 66666666665543
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-48 Score=484.32 Aligned_cols=536 Identities=21% Similarity=0.223 Sum_probs=356.5
Q ss_pred EEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcc-hhhhcCCCCCCEEeeeC
Q 035852 242 TLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLI-PEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 242 ~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 320 (960)
..+.+++.++ .+|. -.++|++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|.++++|++|+|++
T Consensus 8 ~~dcs~~~L~--~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLT--QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSS--CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCC--CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 4555666664 2443 3456666666666666666666666666666666666444433 55566666666666666
Q ss_pred ccccccccHHHHhcCCCCCEEeCCCCCCCcccccc--cccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcC
Q 035852 321 NRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRS--FSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLS 398 (960)
Q Consensus 321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls 398 (960)
|.+.+..| ..+.++++|++|+|++|.+++.+|.. +..+++| ++|+++
T Consensus 83 N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L------------------------------~~L~Ls 131 (844)
T 3j0a_A 83 SKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL------------------------------TRLDLS 131 (844)
T ss_dssp CCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC------------------------------CEEEEE
T ss_pred CcCcccCH-hHccCCcccCEeeCcCCCCCcccccCccccccCCC------------------------------CEEECC
Confidence 66664444 55666666666666666665544433 5555554 444444
Q ss_pred CCCCCCchh-hhhcCCCCCCEEecCCCcCCCCCcccccCC--CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccc
Q 035852 399 NTTLSGSLT-NQIGKFKVLNSVDLSENSISGQVPWSLGKL--SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475 (960)
Q Consensus 399 ~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l 475 (960)
+|.+++..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..+. .+..+++
T Consensus 132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~----------- 199 (844)
T 3j0a_A 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMN----------- 199 (844)
T ss_dssp SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSC-----------
T ss_pred CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCC-----------
Confidence 455544333 456666777777777776666666666555 5666666666666554443 2222222
Q ss_pred cccCCCCCcccccceEEecccccCCCCCCcccccC---ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccC
Q 035852 476 TLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQ---NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEI 552 (960)
Q Consensus 476 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~---~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 552 (960)
.+ ...+|++|++++|.+.+..+..+... ..++.+.++.+...... ..+.+.+..
T Consensus 200 ------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----------------~~~~l~~~~ 256 (844)
T 3j0a_A 200 ------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----------------GFHNIKDPD 256 (844)
T ss_dssp ------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS----------------SCSSSTTGG
T ss_pred ------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc----------------cccccCCCC
Confidence 00 00124444444444443333333221 23344444322111000 001111100
Q ss_pred C-Cccc--cCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCC
Q 035852 553 P-NLTE--VSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD 626 (960)
Q Consensus 553 ~-~l~~--l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 626 (960)
. .+.. .++|+.|++++|.+.+..|.. +++|+.|++++|++.+..+ ..+.++++|+.|++++|.+++..|.
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT----TTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh----HHhcCCCCCCEEECCCCCCCccCHH
Confidence 0 1111 134555555555555444432 3455566666666554433 2345688999999999999988899
Q ss_pred cccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcc
Q 035852 627 CWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPR 706 (960)
Q Consensus 627 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~ 706 (960)
.+..+++|++|++++|++.+..+..|..+++|++|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~----~~~ 402 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI----NLT 402 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC----CTT
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc----ccc
Confidence 99999999999999999998888889999999999999999984 33 3789999999999998 67753 568
Q ss_pred cceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCcc-ccccccchhccCCCCcccccCCCCCCCCCCcccccc
Q 035852 707 MIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTC-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITE 784 (960)
Q Consensus 707 L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (960)
++.|++++|++++.. +..+..+++|+.|++++|++++..+.. +..
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------- 449 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--------------------------------- 449 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS---------------------------------
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc---------------------------------
Confidence 999999999998643 345678999999999999998654331 111
Q ss_pred ccccceEEEecccchhhhhhhccccEEEccCCccc-----ccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEE
Q 035852 785 QFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS-----GEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESL 859 (960)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 859 (960)
+++|+.|+|++|+++ +..|..+..+++|+.|||++|++++.+|..++.+++|+.|
T Consensus 450 --------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 509 (844)
T 3j0a_A 450 --------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL 509 (844)
T ss_dssp --------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred --------------------CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence 234689999999997 5556778999999999999999999999999999999999
Q ss_pred ECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccc
Q 035852 860 DFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVL 919 (960)
Q Consensus 860 ~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~ 919 (960)
||++|++++..|..+. ++|+.|++++|+++|.+|.. |..+....+.|||..|..++
T Consensus 510 ~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 510 SLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred ECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 9999999987777766 89999999999999999865 55667777899999997654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-47 Score=453.93 Aligned_cols=522 Identities=18% Similarity=0.173 Sum_probs=300.3
Q ss_pred ceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEec
Q 035852 191 ENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDL 270 (960)
Q Consensus 191 ~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L 270 (960)
+.++.++.+++.++. .+ .+++++|++++|.++++.+..|.++++|++|++++|.++ +..+..+.++++|++|++
T Consensus 10 ~~~~c~~~~l~~ip~---~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 10 ITYQCMELNFYKIPD---NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TEEECCSSCCSSCCS---SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCccccCC---Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeC
Confidence 445556555555432 11 245677777777777666666666777777777776665 444555666666666666
Q ss_pred cCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccc-cccHHHHhcCCCCCEEeCCCCCCC
Q 035852 271 SDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG-RISSVLLENLSSIQSLDLSFNELE 349 (960)
Q Consensus 271 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~i~~~~l~~l~~L~~L~Ls~n~l~ 349 (960)
++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+| ..++++++|++|++++|.++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccc
Confidence 6666665555666666666666666666665544446666666666666666653 234 44555666666666666555
Q ss_pred cccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-
Q 035852 350 WKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG- 428 (960)
Q Consensus 350 ~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~- 428 (960)
+..+..++.+++|+. ..+.+++++|.+++..+..+... +|+.|++++|....
T Consensus 163 ~~~~~~~~~l~~L~~--------------------------~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~ 215 (570)
T 2z63_A 163 SIYCTDLRVLHQMPL--------------------------LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN 215 (570)
T ss_dssp EECGGGGHHHHTCTT--------------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred eecHHHccchhccch--------------------------hhhhcccCCCCceecCHHHhccC-cceeEeccccccccc
Confidence 444444444433310 01345555555554444444333 45555555543221
Q ss_pred CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccc
Q 035852 429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLH 508 (960)
Q Consensus 429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 508 (960)
.++..+..++.++...+....+. .... +.......+..+.+
T Consensus 216 ~~~~~~~~l~~l~~~~l~~~~~~---------~~~~----------l~~~~~~~~~~l~~-------------------- 256 (570)
T 2z63_A 216 VMKTCIQGLAGLEVHRLVLGEFR---------NEGN----------LEKFDKSALEGLCN-------------------- 256 (570)
T ss_dssp HHHHHHHTTTTCEEEEEEEEECC---------CCSS----------CEECCTTTTGGGGG--------------------
T ss_pred chhhhhcCccccceeeecccccc---------Cchh----------hhhcchhhhccccc--------------------
Confidence 12333334444443333221111 0000 01111111111111
Q ss_pred cCccCcEEeccCC-CCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEc
Q 035852 509 SQNHLVNLDISDS-GIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDL 587 (960)
Q Consensus 509 ~~~~L~~L~Ls~n-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~l 587 (960)
+ .++.++++++ .+.+.+|.. +..+++|+.|++++|.+.+..+.+..+ +|+.|++++|.+.
T Consensus 257 -l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--------------- 317 (570)
T 2z63_A 257 -L-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--------------- 317 (570)
T ss_dssp -S-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS---------------
T ss_pred -c-chhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc---------------
Confidence 0 2334444444 333333333 244566666666666665322233333 4555555555443
Q ss_pred ccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe
Q 035852 588 SKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN 667 (960)
Q Consensus 588 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 667 (960)
.+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|+
T Consensus 318 -----------------------------------~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 318 -----------------------------------QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp -----------------------------------SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred -----------------------------------ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 1111 1233444444444444433332 344555555555555
Q ss_pred ecccC--CcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCc-hhhcCCCCCCeEeecCCcCccc
Q 035852 668 LSGTL--PVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP-LELCHLAFLKILVLAGNNLSGT 744 (960)
Q Consensus 668 l~~~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ 744 (960)
+++.. |..+..+++|++|++++|++++ +|..+. .+++|+.|++++|++.+..| ..+..+++|+.|++++|++++.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cCccccccccccccCccCEEECCCCcccc-cccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 54332 4445555566666666666553 232233 46666666666666665544 3566777788888888887777
Q ss_pred cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccc-ccCc
Q 035852 745 IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFS-GEIP 823 (960)
Q Consensus 745 ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-g~ip 823 (960)
+|..+..++.| +.|+|++|+++ +.+|
T Consensus 437 ~~~~~~~l~~L-----------------------------------------------------~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 437 FNGIFNGLSSL-----------------------------------------------------EVLKMAGNSFQENFLP 463 (570)
T ss_dssp CTTTTTTCTTC-----------------------------------------------------CEEECTTCEEGGGEEC
T ss_pred chhhhhcCCcC-----------------------------------------------------cEEECcCCcCccccch
Confidence 66665554443 78888888887 5788
Q ss_pred hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCc
Q 035852 824 AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEA 898 (960)
Q Consensus 824 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~ 898 (960)
..++.+++|+.|+|++|++++.+|..++++++|+.|++++|++++.+|..+.++++|+.|++++|+++|.+|...
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 888889999999999999998889999999999999999999998888888999999999999999999988753
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-47 Score=451.82 Aligned_cols=501 Identities=19% Similarity=0.234 Sum_probs=308.3
Q ss_pred CCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccc
Q 035852 112 EHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLE 191 (960)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~ 191 (960)
+++++|++++|.+++. .+..+..+++|++|+|++|++.+..|..++++++|++|++++|.++.+++
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~------------- 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL------------- 93 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-------------
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH-------------
Confidence 4688888888888764 55678888888888888888887777778888888888888887654432
Q ss_pred eeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEecc
Q 035852 192 NLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 192 ~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls 271 (960)
..+..+++|++|++++|++++.++..++++++|++|++++|.++...+|..++++++|++|+++
T Consensus 94 ----------------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 94 ----------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp ----------------TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred ----------------hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 2445566666666666666666666677778888888888877632457777788888888888
Q ss_pred CcccCCCCcccccCCCCC----CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC
Q 035852 272 DNNFQGPIPDTIQNWTSL----RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347 (960)
Q Consensus 272 ~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~ 347 (960)
+|++++..+..++.+++| ++|++++|.+++..|..+..+ +|+.|++++|..........+..++.++.+.+....
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence 888777667777777777 778888888877766666555 688888887754433222556666666655543322
Q ss_pred CCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCC-cC
Q 035852 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSEN-SI 426 (960)
Q Consensus 348 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n-~l 426 (960)
+.. ...++.+ ....+. .+..+ .++.++++++ .+
T Consensus 237 ~~~--------~~~l~~~--------------------------------~~~~~~-----~l~~l-~l~~l~l~~~~~~ 270 (570)
T 2z63_A 237 FRN--------EGNLEKF--------------------------------DKSALE-----GLCNL-TIEEFRLAYLDYY 270 (570)
T ss_dssp CCC--------CSSCEEC--------------------------------CTTTTG-----GGGGS-EEEEEEEEETTEE
T ss_pred ccC--------chhhhhc--------------------------------chhhhc-----ccccc-chhhhhhhcchhh
Confidence 110 0111000 000000 01111 1334444444 44
Q ss_pred CCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcc
Q 035852 427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW 506 (960)
Q Consensus 427 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 506 (960)
.+.+|..+..+++|++|++++|.+. .+|. .+..+ +|+
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~-~~~~~-~L~---------------------------------------- 307 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNF-GWQ---------------------------------------- 307 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEEC-SCCB-CCSCC-CCS----------------------------------------
T ss_pred hhhchhhhcCcCcccEEEecCccch-hhhh-hhccC-Ccc----------------------------------------
Confidence 4445555555555555555555544 2221 11111 222
Q ss_pred cccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEE
Q 035852 507 LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLD 586 (960)
Q Consensus 507 ~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 586 (960)
+|++++|.+. .+|. ..+++|+.|++++|.+.+.
T Consensus 308 --------~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~----------------------------------- 340 (570)
T 2z63_A 308 --------HLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNA----------------------------------- 340 (570)
T ss_dssp --------EEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCB-----------------------------------
T ss_pred --------EEeeccCccc-ccCc---ccccccCEEeCcCCccccc-----------------------------------
Confidence 2222222111 1111 0122233333333222211
Q ss_pred cccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCC--CcCcCCCCCCcEEECC
Q 035852 587 LSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKL--PTSLGALSLLRSLHLR 664 (960)
Q Consensus 587 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~ 664 (960)
.+. ..+++|++|++++|++++.. |..+..+++|++|+++
T Consensus 341 -------------------------------------~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 341 -------------------------------------FSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp -------------------------------------CCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred -------------------------------------ccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 111 22334444444444444322 3444555555555555
Q ss_pred CCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc-c
Q 035852 665 NNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS-G 743 (960)
Q Consensus 665 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g 743 (960)
+|++++..+. +..+++|++|++++|++++..|...+..+++|++|++++|++.+..|..+..+++|+.|++++|+++ +
T Consensus 382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 5555533322 5556666666666666655444322235666666666667666667777777888888888888887 5
Q ss_pred ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCc
Q 035852 744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIP 823 (960)
Q Consensus 744 ~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip 823 (960)
.+|..+..++.| +.|+|++|++++.+|
T Consensus 461 ~~p~~~~~l~~L-----------------------------------------------------~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 461 FLPDIFTELRNL-----------------------------------------------------TFLDLSQCQLEQLSP 487 (570)
T ss_dssp EECSCCTTCTTC-----------------------------------------------------CEEECTTSCCCEECT
T ss_pred cchhhhhcccCC-----------------------------------------------------CEEECCCCccccCCh
Confidence 677666555444 789999999998889
Q ss_pred hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCC
Q 035852 824 AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPK 872 (960)
Q Consensus 824 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 872 (960)
..++++++|+.|+|++|++++.+|..++++++|+.|++++|+++|.+|.
T Consensus 488 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999999998888899999999999999999988875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-45 Score=433.93 Aligned_cols=415 Identities=19% Similarity=0.218 Sum_probs=276.8
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeecc
Q 035852 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYAS 471 (960)
Q Consensus 393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~ 471 (960)
++|++++|.+++..+..++.+++|++|++++|.+++ ..|..+.++++|++|++++|++.+.++...+.++++|++|+++
T Consensus 77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred CEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc
Confidence 444444444444444455666666666666666654 2445566666666676666665445554455555555555555
Q ss_pred CccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccccc
Q 035852 472 RNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGE 551 (960)
Q Consensus 472 ~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 551 (960)
+|.++...+..+.. +++|+.|++++|.+ +.+|..++..+++|++|++++|++++.
T Consensus 157 ~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 157 ALSLRNYQSQSLKS------------------------IRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ETTCCEECTTTTTT------------------------CSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCcccccChhhhhc------------------------cccCceEecccCcc-cccchhhHhhcccccEEEccCCccccc
Confidence 55554443333333 44444444444433 233444444455555555555555542
Q ss_pred C----CCccccCCCCeEEcccCcCcCCCCC-------CCccCcEEEccccccccc--ccchhhcccCCCCcccEEecccc
Q 035852 552 I----PNLTEVSQLGTLDLSANNLSGQLPL-------LASNVMVLDLSKNKLSGS--ILHFVCHETNGTRLTQIINLEDN 618 (960)
Q Consensus 552 ~----~~l~~l~~L~~L~Ls~n~l~~~~p~-------~~~~L~~L~ls~n~l~~~--~~~~~~~~~~~~~~L~~L~Ls~n 618 (960)
. +....+++|+.|++++|.+++..+. .+.+++.+++++|.+.+. ++......+..++.++.+++.++
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 1 1223345555566655555443221 234556666666655442 11111223345667777777777
Q ss_pred cccCC-----CCCcccCCCcccEEECCCCccccCCCcCc-CCCCCCcEEECCCCeecccCC---cCCcCCCCCcEEecCC
Q 035852 619 LLAGE-----IPDCWMNWRYLLVLRLDNNKFTGKLPTSL-GALSLLRSLHLRNNNLSGTLP---VSLGNCTELETIDIGE 689 (960)
Q Consensus 619 ~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~ 689 (960)
.+... ++..+...++|++|++++|++. .+|..+ ..+++|++|++++|++++.+| ..++.+++|++|++++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 65432 2222334568999999999987 777766 578999999999999988764 4478889999999999
Q ss_pred CcccccCch--HHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852 690 NEFSGNVPA--WIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI 767 (960)
Q Consensus 690 N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~ 767 (960)
|++++ +|. .....+++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|.++
T Consensus 371 N~l~~-~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------------ 429 (549)
T 2z81_A 371 NHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------------ 429 (549)
T ss_dssp SCCCC-HHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------------
T ss_pred Ccccc-cccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh------------------
Confidence 99984 432 23347899999999999998 67888888999999999999986 333322
Q ss_pred cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847 (960)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP 847 (960)
.+.|+.|||++|++++.+ +.+++|+.|||++|+++ .||
T Consensus 430 -------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 430 -------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp -------------------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCC
T ss_pred -------------------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCC
Confidence 123589999999999754 47899999999999998 788
Q ss_pred hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
+ .+.+++|+.|||++|++++.+|..++++++|++|++++|++.|.+|..
T Consensus 468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 7 578999999999999999999999999999999999999999988853
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6e-44 Score=423.19 Aligned_cols=482 Identities=17% Similarity=0.195 Sum_probs=340.4
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccC
Q 035852 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSD 272 (960)
Q Consensus 193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~ 272 (960)
.+.+++.++.++. .+ .++|++|++++|++++..+..|.++++|++|++++|+++ +..|..+.++++|++|++++
T Consensus 10 c~~~~~~l~~ip~---~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 10 CDGRSRSFTSIPS---GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp EECTTSCCSSCCS---CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTT
T ss_pred EECCCCccccccc---cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCC
Confidence 3455555555432 11 267888888888888888888888888888888888887 66667888888888888888
Q ss_pred cccCCCCcccccCCCCCCEEeCCCCcCCCc-chhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852 273 NNFQGPIPDTIQNWTSLRHLDLSSNHFSYL-IPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK 351 (960)
Q Consensus 273 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 351 (960)
|++++..|..++++++|++|++++|.+++. .|..++++++|++|++++|.+.+.++...+.++++|++|++++|.+++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 888877777788888888888888888763 5667888888999999888866677656788888899999999888888
Q ss_pred cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhh-hcCCCCCCEEecCCCcCCCCC
Q 035852 352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ-IGKFKVLNSVDLSENSISGQV 430 (960)
Q Consensus 352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~ 430 (960)
.|..+..+++|++|++++|.+.. +|.. +..+++|++|++++|.+++..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~-------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAF-------------------------------LLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTT-------------------------------HHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ChhhhhccccCceEecccCcccc-------------------------------cchhhHhhcccccEEEccCCcccccc
Confidence 88888888877666665554432 2222 234555555555555555421
Q ss_pred --c-ccccCCCCCcEEecCCcccccccchh---hhcCCCCCcEeeccCccccccCC------CCCcccccceEEeccccc
Q 035852 431 --P-WSLGKLSSLRYLDISNNQLNGTVSEI---HFANLSSLTFFYASRNSLTLKAN------PNWVPVFQLEELDLRSCY 498 (960)
Q Consensus 431 --p-~~l~~l~~L~~L~L~~n~l~~~i~~~---~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~l~~~~ 498 (960)
| .....+++|+.|++++|.+.+..+.. .+..+++|+.+++++|.+..... ..+....+++.+++.++.
T Consensus 213 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 292 (549)
T 2z81_A 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292 (549)
T ss_dssp CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB
T ss_pred ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccc
Confidence 1 11223455666666666555433221 12345556666666665543221 122344556666666655
Q ss_pred CCC-----CCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC----CccccCCCCeEEcccC
Q 035852 499 LGP-----PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP----NLTEVSQLGTLDLSAN 569 (960)
Q Consensus 499 l~~-----~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~l~~l~~L~~L~Ls~n 569 (960)
+.. ..+..+....+|+.|++++|.+ +.+|..++..+++|++|++++|++++.+| .+..+++|++|++++|
T Consensus 293 i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp CSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred cchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 432 1222334456777777777776 46777766667777777777777766542 2445555666666665
Q ss_pred cCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCC
Q 035852 570 NLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLP 649 (960)
Q Consensus 570 ~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 649 (960)
++++..+ ....+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|
T Consensus 372 ~l~~~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~ 426 (549)
T 2z81_A 372 HLRSMQK-----------------------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVK 426 (549)
T ss_dssp CCCCHHH-----------------------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCC
T ss_pred ccccccc-----------------------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-ccc
Confidence 5543211 0112445788899999999888 57888899999999999999998 455
Q ss_pred cCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCC
Q 035852 650 TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA 729 (960)
Q Consensus 650 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 729 (960)
..+. ++|++|++++|++++.+ ..+++|++|++++|+++ .+|.. . .+++|++|++++|++++.+|..+..++
T Consensus 427 ~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 427 TCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp TTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred chhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCc
Confidence 5442 68999999999998643 57899999999999998 78874 3 699999999999999999999999999
Q ss_pred CCCeEeecCCcCccccC
Q 035852 730 FLKILVLAGNNLSGTIP 746 (960)
Q Consensus 730 ~L~~L~Ls~N~l~g~ip 746 (960)
+|+.|++++|++++..|
T Consensus 498 ~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred ccCEEEecCCCccCCCc
Confidence 99999999999998877
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-43 Score=426.65 Aligned_cols=520 Identities=20% Similarity=0.194 Sum_probs=330.8
Q ss_pred CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 293 (960)
+++++|+|++|+|+++++..|.++++|++|+|++|+++ +..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35777777777777777777777777777777777776 55555677777777777777777765556677777777777
Q ss_pred CCCCcCCCcchhhhcCCCCCCEEeeeCcccccc-ccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGR-ISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372 (960)
Q Consensus 294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 372 (960)
+++|++++..+..|+++++|++|++++|.+++. +| ..++.+++|++|++++|++++..+..+..+.+++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~-------- 201 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL-------- 201 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT--------
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCccccccccccccchhhhhh--------
Confidence 777777766666677777777777777776542 33 55666777777777777766655555544433311
Q ss_pred CCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCccccc
Q 035852 373 SHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNG 452 (960)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 452 (960)
....++++.|.++...+. ......+ +.+++.+|....
T Consensus 202 ------------------~~~~~~ls~n~l~~i~~~-~~~~~~~------------------------~~l~l~~n~~~~ 238 (635)
T 4g8a_A 202 ------------------LNLSLDLSLNPMNFIQPG-AFKEIRL------------------------HKLTLRNNFDSL 238 (635)
T ss_dssp ------------------CCCEEECTTCCCCEECTT-TTTTCEE------------------------EEEEEESCCSSH
T ss_pred ------------------hhhhhhcccCcccccCcc-cccchhh------------------------hhhhhhcccccc
Confidence 113445555544422221 1122233 344444443333
Q ss_pred ccchhhhcCCCCCcEeeccCcccc------ccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCC
Q 035852 453 TVSEIHFANLSSLTFFYASRNSLT------LKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDT 526 (960)
Q Consensus 453 ~i~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~ 526 (960)
.+....+..+..++...+..+... ......+.....+....+..+....... .
T Consensus 239 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------------~ 297 (635)
T 4g8a_A 239 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------------G 297 (635)
T ss_dssp HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE---------------------E
T ss_pred cccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc---------------------c
Confidence 333333444444444433322111 1111112222222222222221110000 0
Q ss_pred CchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCC
Q 035852 527 IPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNG 606 (960)
Q Consensus 527 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~ 606 (960)
+ ...+....+++.+++.++.+... +.+.....++.|++.+|.+.+..+..+..
T Consensus 298 ~-~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~------------------------- 350 (635)
T 4g8a_A 298 I-IDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKS------------------------- 350 (635)
T ss_dssp C-TTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCCBCTT-------------------------
T ss_pred h-hhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcccchh-------------------------
Confidence 0 01122334455555555544322 22333444555555555554443333334
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccc--cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcE
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT--GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 684 (960)
++.+++..|...... ....+++|+.|++++|.+. +..+..+..+.+|+.+++..|... .++..+..+++|+.
T Consensus 351 ---L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~ 424 (635)
T 4g8a_A 351 ---LKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEH 424 (635)
T ss_dssp ---CCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCE
T ss_pred ---hhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccc
Confidence 444444444443222 2345677777888777764 335555666778888888888876 34566777888888
Q ss_pred EecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc-cccCccccccccchhccCCCC
Q 035852 685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS-GTIPTCISNFTAMATFLGSDS 763 (960)
Q Consensus 685 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~~l~~~~~~~~ 763 (960)
++++.|......+...+..+++++.++++.|.+.+..|..+..++.|+.|++++|++. +.+|..+..+++
T Consensus 425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~--------- 495 (635)
T 4g8a_A 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN--------- 495 (635)
T ss_dssp EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------
T ss_pred hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccc---------
Confidence 8888888776666665557888888888888888888888888999999999999754 345555554444
Q ss_pred cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852 764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS 843 (960)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 843 (960)
|+.|||++|+|++.+|..|+++++|+.|+|++|+++
T Consensus 496 --------------------------------------------L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 496 --------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp --------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred --------------------------------------------cCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 489999999999999999999999999999999999
Q ss_pred ccCchhhccCCCCCEEECcCCcccccCCCCCCCC-CCCCEEEcccCcceec
Q 035852 844 GRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL-VFLSHFNISYNNLSGE 893 (960)
Q Consensus 844 g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~l~ls~N~l~g~ 893 (960)
+..|..|+.+++|+.|||++|++++.+|..+.++ ++|++|++++|+++..
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9889999999999999999999999999999988 7899999999988764
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-45 Score=439.69 Aligned_cols=475 Identities=16% Similarity=0.236 Sum_probs=299.1
Q ss_pred CCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccC------C------CCcccccCCCCCCEEeCCCCcCCCcchh
Q 035852 238 SSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ------G------PIPDTIQNWTSLRHLDLSSNHFSYLIPE 305 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 305 (960)
.+++.|+|+++.+. +.+|+.++++++|++|+|++|.+. + .+|... +..|+ ++++.|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~-g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGAS-GRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCE-EEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccC-CcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence 35677777777776 667777777777777777777551 1 122211 23333 44444444444443
Q ss_pred hhcCC-CCCCEEeeeCccccccccHHHHhcCCCCCEEeCC--CCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHH
Q 035852 306 WLNKF-SRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLS--FNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLA 382 (960)
Q Consensus 306 ~l~~l-~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 382 (960)
.+..+ ..+..+++....+. ......++.+.+. .|.+++ +|..++++++|++|++++|.++...+..
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~-------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~--- 225 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK-------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICE--- 225 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC-------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSS---
T ss_pred hHHHHHHHHhhcCccccccc-------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccc---
Confidence 33211 11111111111110 0111223333333 467887 8888888888855555555544311000
Q ss_pred hhccCCCCcccEEEcCCCCCCCchhhhhc--CCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcc-ccc-ccchhh
Q 035852 383 IFSGCVSDVLESLDLSNTTLSGSLTNQIG--KFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ-LNG-TVSEIH 458 (960)
Q Consensus 383 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~i~~~~ 458 (960)
..+.-..+...+.+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|. .
T Consensus 226 ----------~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~ 294 (636)
T 4eco_A 226 ----------AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD-D 294 (636)
T ss_dssp ----------SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH-H
T ss_pred ----------cccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH-H
Confidence 0000000001112888888 99999999999999999999999999999999999998 887 6665 2
Q ss_pred hcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCch-hHhhcCCc
Q 035852 459 FANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPN-RFWKSITQ 537 (960)
Q Consensus 459 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~-~~~~~l~~ 537 (960)
+..+. .+..+++|++|++++|++. .+|. ..+..+++
T Consensus 295 ~~~L~------------------------------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 295 WQALA------------------------------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp HHHHH------------------------------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred HHhhh------------------------------------------ccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 32220 0011233444444444443 3443 12334445
Q ss_pred ccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEeccc
Q 035852 538 FNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLED 617 (960)
Q Consensus 538 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~ 617 (960)
|++|++++|+++|.+|.+..+ ++|+.|++++
T Consensus 332 L~~L~L~~N~l~g~ip~~~~l-------------------------------------------------~~L~~L~L~~ 362 (636)
T 4eco_A 332 LGMLECLYNQLEGKLPAFGSE-------------------------------------------------IKLASLNLAY 362 (636)
T ss_dssp CCEEECCSCCCEEECCCCEEE-------------------------------------------------EEESEEECCS
T ss_pred CCEEeCcCCcCccchhhhCCC-------------------------------------------------CCCCEEECCC
Confidence 555555555554444433333 3444444444
Q ss_pred ccccCCCCCcccCCCc-ccEEECCCCccccCCCcCcCCCC--CCcEEECCCCeecccCCcCCc-------CCCCCcEEec
Q 035852 618 NLLAGEIPDCWMNWRY-LLVLRLDNNKFTGKLPTSLGALS--LLRSLHLRNNNLSGTLPVSLG-------NCTELETIDI 687 (960)
Q Consensus 618 n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~L~~N~l~~~~p~~l~-------~l~~L~~L~L 687 (960)
|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|++|++++|++++.+|..+. .+++|++|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 4444 45556666666 777777777776 6666665544 677777777777777776666 6667777777
Q ss_pred CCCcccccCchHHhhcCcccceeeeccccccccCchhhcC--------CCCCCeEeecCCcCccccCcccc--ccccchh
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH--------LAFLKILVLAGNNLSGTIPTCIS--NFTAMAT 757 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~--~l~~l~~ 757 (960)
++|+++ .+|..++..+++|++|++++|+++ .+|..... +++|+.|++++|+++ .+|..+. .++.
T Consensus 441 s~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~--- 514 (636)
T 4eco_A 441 SNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY--- 514 (636)
T ss_dssp CSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT---
T ss_pred cCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC---
Confidence 777777 677766656777778888777777 45543322 238888899988888 6776654 4433
Q ss_pred ccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeec
Q 035852 758 FLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNL 837 (960)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 837 (960)
|+.|+|++|++++ +|..++++++|+.|+|
T Consensus 515 --------------------------------------------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 515 --------------------------------------------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp --------------------------------------------------CCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred --------------------------------------------------cCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 4788999999987 8888888999999988
Q ss_pred ------CcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852 838 ------SHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 838 ------s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
++|++.+.+|+.++++++|+.|||++|++ +.||..+. +.|+.|++++|++.-
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 56889999999999999999999999999 79999877 799999999997763
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=426.20 Aligned_cols=459 Identities=17% Similarity=0.194 Sum_probs=335.8
Q ss_pred CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCC
Q 035852 290 RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG 369 (960)
Q Consensus 290 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 369 (960)
++|++++|.++. +|..+. ++|++|++++|.+++..+ ..+.++++|++|++++|++++..|..|+.+++|++|++
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-- 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL-- 76 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC--
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEec--
Confidence 578999999985 566555 799999999999985444 78889999999999999998877888888888844444
Q ss_pred cccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEecCCc
Q 035852 370 IQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLDISNN 448 (960)
Q Consensus 370 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n 448 (960)
++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|
T Consensus 77 ----------------------------s~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 77 ----------------------------SHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp ----------------------------CSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ----------------------------CCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence 444444 34444 68899999999999887 47788888999999999998
Q ss_pred ccccccchhhhcCCCCC--cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccCCCCcC
Q 035852 449 QLNGTVSEIHFANLSSL--TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISDSGIVD 525 (960)
Q Consensus 449 ~l~~~i~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~n~~~~ 525 (960)
++.+ ..+..+++| +.|++++|.+.. .+..|..+..+. ....+++++|.+.+
T Consensus 126 ~l~~----~~~~~l~~L~L~~L~l~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~ 179 (520)
T 2z7x_B 126 HLEK----SSVLPIAHLNISKVLLVLGETYG----------------------EKEDPEGLQDFNTESLHIVFPTNKEFH 179 (520)
T ss_dssp SCCG----GGGGGGTTSCEEEEEEEECTTTT----------------------SSCCTTTTTTCCEEEEEEECCSSSCCC
T ss_pred ccch----hhccccccceeeEEEeecccccc----------------------cccccccccccccceEEEEeccCcchh
Confidence 8764 245555555 666666555410 333444443333 23345666666666
Q ss_pred CCchhHhhcCCcccEEEccCcc-------ccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccc
Q 035852 526 TIPNRFWKSITQFNYLSLSNNQ-------IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILH 598 (960)
Q Consensus 526 ~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~ 598 (960)
.++...+..+++|+.|++++|. +.+.++.+..+++|+.|++++|.+++..+ .
T Consensus 180 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~---------------------~ 238 (520)
T 2z7x_B 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF---------------------I 238 (520)
T ss_dssp CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHH---------------------H
T ss_pred hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHH---------------------H
Confidence 6666666667777777777776 55555666666667777666665543211 1
Q ss_pred hhhcccCCCCcccEEecccccccCCCCCcc-----cCCCcccEEECCCCccccCCC-cCcCCC---CCCcEEECCCCeec
Q 035852 599 FVCHETNGTRLTQIINLEDNLLAGEIPDCW-----MNWRYLLVLRLDNNKFTGKLP-TSLGAL---SLLRSLHLRNNNLS 669 (960)
Q Consensus 599 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~l---~~L~~L~L~~N~l~ 669 (960)
...... ..+.|+.|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.
T Consensus 239 ~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 239 RILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp HHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc
Confidence 111111 13467777777777777777777 7788888888888877 455 344443 56888888888876
Q ss_pred ccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc--cCchhhcCCCCCCeEeecCCcCccccCc
Q 035852 670 GTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG--VFPLELCHLAFLKILVLAGNNLSGTIPT 747 (960)
Q Consensus 670 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 747 (960)
+.. .+..+++|++|++++|++++.+|.++. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 316 ~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 316 HML--CPSKISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred ccc--chhhCCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 322 125778888888888888877777775 68888888888888886 5667788899999999999999876775
Q ss_pred c-ccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhh
Q 035852 748 C-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEI 826 (960)
Q Consensus 748 ~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l 826 (960)
. +..+ ++|+.|++++|++++.+|..+
T Consensus 393 ~~~~~l-----------------------------------------------------~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 393 GDCSWT-----------------------------------------------------KSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp CSCCCC-----------------------------------------------------TTCCEEECCSSCCCGGGGGSC
T ss_pred chhccC-----------------------------------------------------ccCCEEECcCCCCCcchhhhh
Confidence 4 3322 335889999999998888776
Q ss_pred hhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC-CCCCCCCCEEEcccCcceecCC
Q 035852 827 TVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN-TVNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 827 ~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP 895 (960)
. ++|+.|||++|+++ .+|+.+..+++|+.|||++|+++ .+|.. +.++++|++|++++|++++..|
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 5 78999999999998 78998889999999999999999 57776 8899999999999999988765
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-42 Score=417.61 Aligned_cols=528 Identities=20% Similarity=0.207 Sum_probs=338.2
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182 (960)
Q Consensus 103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~ 182 (960)
+||+.+. +.+++|||++|.++++ .+..|.++++|++|+|++|++.+..|.+|+++++|++|+|++|+++.++
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~----- 116 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA----- 116 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-----
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-----
Confidence 4554442 4788999999998864 4567888999999999999888877788888888999888888776543
Q ss_pred cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262 (960)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 262 (960)
+..|.++++|++|++++|+++++++..|+++++|++|++++|.++....|..++.+
T Consensus 117 ------------------------~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 117 ------------------------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172 (635)
T ss_dssp ------------------------GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred ------------------------HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccc
Confidence 23456677777777777888877777888888899999998888744567788888
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCC----CEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCC
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSL----RHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSI 338 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L 338 (960)
++|++|++++|++++..+..+..+.++ ..++++.|.+....+..+ ....++.+++.+|.....+....+..+..+
T Consensus 173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l 251 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 251 (635)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccc
Confidence 899999999998887777777665544 468888888877554433 444667788888876655555667777777
Q ss_pred CEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCE
Q 035852 339 QSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNS 418 (960)
Q Consensus 339 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 418 (960)
+...+..+...... .++.. ....+..+..+..
T Consensus 252 ~~~~l~~~~~~~~~--------~l~~~----------------------------------------~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 252 EVHRLVLGEFRNEG--------NLEKF----------------------------------------DKSALEGLCNLTI 283 (635)
T ss_dssp EEEEEEEECCTTSC--------CCSCC----------------------------------------CTTTTGGGGGSEE
T ss_pred cccccccccccccc--------ccccc----------------------------------------cccccccccchhh
Confidence 76655433221100 00000 0000111111111
Q ss_pred EecCCCcCC---CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecc
Q 035852 419 VDLSENSIS---GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLR 495 (960)
Q Consensus 419 L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 495 (960)
..+..+... ..++..+..+.+++.+++.++.+.+.. .+.....|+.|++.+|.+.....
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~--------------- 345 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPT--------------- 345 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEESCEESSCCC---------------
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhcccccccCcCc---------------
Confidence 111111110 011223334455556665555543221 12233333333333333221110
Q ss_pred cccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCC
Q 035852 496 SCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQL 575 (960)
Q Consensus 496 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 575 (960)
..++.|+.+++..|..... +....+++|+.+++++|.+.
T Consensus 346 -------------------------------------~~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~--- 384 (635)
T 4g8a_A 346 -------------------------------------LKLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLS--- 384 (635)
T ss_dssp -------------------------------------CBCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCB---
T ss_pred -------------------------------------ccchhhhhcccccccCCCC-cccccccccccchhhccccc---
Confidence 0122333333333332211 11122223333333333221
Q ss_pred CCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCC
Q 035852 576 PLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGAL 655 (960)
Q Consensus 576 p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 655 (960)
. .+..+..+..+.+|+++++..|...+ .+..+..+
T Consensus 385 ------------------~--------------------------~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l 419 (635)
T 4g8a_A 385 ------------------F--------------------------KGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGL 419 (635)
T ss_dssp ------------------E--------------------------EEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTC
T ss_pred ------------------c--------------------------ccccccchhhhhhhhhhhcccccccc-cccccccc
Confidence 0 01233344455667777777776653 44556667
Q ss_pred CCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccc-ccCchhhcCCCCCCe
Q 035852 656 SLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFH-GVFPLELCHLAFLKI 733 (960)
Q Consensus 656 ~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~ 733 (960)
++|+.+++.+|+.....+ ..+..+++++.++++.|++.+..|..+. .++.++.|++++|++. +.+|..+..+++|+.
T Consensus 420 ~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred ccccchhhhhccccccccccccccccccccccccccccccccccccc-cchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 777777777777665443 4567777788888888887765555544 6778888888887644 456777888899999
Q ss_pred EeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEc
Q 035852 734 LVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813 (960)
Q Consensus 734 L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 813 (960)
|+|++|++++.+|..|.++++| ++|+|
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L-----------------------------------------------------~~L~L 525 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSL-----------------------------------------------------QVLNM 525 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTC-----------------------------------------------------CEEEC
T ss_pred EECCCCccCCcChHHHcCCCCC-----------------------------------------------------CEEEC
Confidence 9999999988888777766555 78999
Q ss_pred cCCcccccCchhhhhhcccceeecCcccCcccCchhhccC-CCCCEEECcCCccccc
Q 035852 814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAM-ALLESLDFSSNRLEGE 869 (960)
Q Consensus 814 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~Ls~N~l~g~ 869 (960)
++|+|++..|..++.+++|++|||++|++++.+|+.+..+ ++|+.|+|++|.+++.
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999998888889999999999999999999999999888 6899999999999864
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.1e-44 Score=418.42 Aligned_cols=204 Identities=19% Similarity=0.267 Sum_probs=163.8
Q ss_pred CCCcccEEecccccccCCCC-CcccCC---CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCC
Q 035852 606 GTRLTQIINLEDNLLAGEIP-DCWMNW---RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681 (960)
Q Consensus 606 ~~~~L~~L~Ls~n~l~~~~p-~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 681 (960)
.++.|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+. + .+..+++|++|++++|++++.+|..++.+++
T Consensus 274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 355666666666666 344 333333 5688888888887632 2 1267788999999999998888888889999
Q ss_pred CcEEecCCCcccc--cCchHHhhcCcccceeeeccccccccCchh-hcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852 682 LETIDIGENEFSG--NVPAWIGERFPRMIILILRSNKFHGVFPLE-LCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF 758 (960)
Q Consensus 682 L~~L~Ls~N~l~g--~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~ 758 (960)
|++|++++|++++ .+|..+. .+++|++|++++|++++.+|.. +..+++|+.|++++|++++.+|..+.
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------- 420 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-------- 420 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--------
T ss_pred CCEEEccCCccCccccchHHHh-hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--------
Confidence 9999999999885 5566665 7899999999999999866654 77889999999999999887776542
Q ss_pred cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecC
Q 035852 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLS 838 (960)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls 838 (960)
+.|+.|||++|+++ .+|..+..+++|+.|||+
T Consensus 421 -----------------------------------------------~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~ 452 (520)
T 2z7x_B 421 -----------------------------------------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452 (520)
T ss_dssp -----------------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred -----------------------------------------------ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence 13489999999999 899999999999999999
Q ss_pred cccCcccCchh-hccCCCCCEEECcCCcccccCC
Q 035852 839 HNFFSGRIPEN-IGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 839 ~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
+|+++ .+|.. +..+++|+.|++++|++++..+
T Consensus 453 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 453 SNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 99999 57776 8999999999999999998665
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.7e-43 Score=425.61 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=106.9
Q ss_pred CCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcC--------CCCCCeEeecCCcCccccCcccc--
Q 035852 681 ELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCH--------LAFLKILVLAGNNLSGTIPTCIS-- 750 (960)
Q Consensus 681 ~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~g~ip~~~~-- 750 (960)
+|+.|++++|+++ .+|.+++..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++|+++ .+|..+.
T Consensus 674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 5555555555555 455555444555666666666555 44433322 236777777777776 5665543
Q ss_pred ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR 830 (960)
Q Consensus 751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~ 830 (960)
.++ +|+.|+|++|++++ +|..+++++
T Consensus 751 ~l~-----------------------------------------------------~L~~L~Ls~N~L~~-lp~~l~~L~ 776 (876)
T 4ecn_A 751 TLP-----------------------------------------------------YLSNMDVSYNCFSS-FPTQPLNSS 776 (876)
T ss_dssp TCT-----------------------------------------------------TCCEEECCSSCCSS-CCCGGGGCT
T ss_pred cCC-----------------------------------------------------CcCEEEeCCCCCCc-cchhhhcCC
Confidence 333 23677777777775 677777777
Q ss_pred ccceeecCc------ccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceec
Q 035852 831 ELRSLNLSH------NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGE 893 (960)
Q Consensus 831 ~L~~L~Ls~------N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~ 893 (960)
+|+.|+|++ |++.+.+|..++++++|+.|+|++|++ +.||..+. ++|+.|||++|++...
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 777777765 888999999999999999999999999 79999876 6899999999988653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.1e-42 Score=404.66 Aligned_cols=464 Identities=18% Similarity=0.201 Sum_probs=313.7
Q ss_pred CCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEE
Q 035852 286 WTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSI 365 (960)
Q Consensus 286 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 365 (960)
+...+++++++|.+++ +|..+. ++|++|++++|.+++ ++...+.++++|++|++++|.+++..|..|..+++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~- 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY- 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE-
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE-
Confidence 3344788888888886 455443 688888888888874 33367788888888888888887766777777777744
Q ss_pred EcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC-CCcccccCCCCCcEEe
Q 035852 366 SLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG-QVPWSLGKLSSLRYLD 444 (960)
Q Consensus 366 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~ 444 (960)
|++++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|+
T Consensus 105 -----------------------------L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~ 152 (562)
T 3a79_B 105 -----------------------------LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG 152 (562)
T ss_dssp -----------------------------EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred -----------------------------EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEe
Confidence 444444444 34443 57778888888888775 3456777777788888
Q ss_pred cCCcccccccchhhhcCCCCC--cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccCC
Q 035852 445 ISNNQLNGTVSEIHFANLSSL--TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISDS 521 (960)
Q Consensus 445 L~~n~l~~~i~~~~~~~l~~L--~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~n 521 (960)
+++|++.+. .+..+++| +.|++++|.+.. .+..|..+..+. ..-.+++++|
T Consensus 153 L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n 206 (562)
T 3a79_B 153 LSAAKFRQL----DLLPVAHLHLSCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPN 206 (562)
T ss_dssp EECSBCCTT----TTGGGTTSCEEEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSS
T ss_pred cCCCccccC----chhhhhhceeeEEEeecccccc----------------------cccCcccccccCcceEEEEecCc
Confidence 777776531 23333333 555555554400 344444444432 1124466666
Q ss_pred CCcCCCchhHhhcCCcccEEEccCcc-----ccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccc
Q 035852 522 GIVDTIPNRFWKSITQFNYLSLSNNQ-----IHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSI 596 (960)
Q Consensus 522 ~~~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~ 596 (960)
.+.+.++...+..+++|+.+++++|+ +.+.++.+..++.|+.++++++.+.+ +.+.+..
T Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~----------------~~~~~~~ 270 (562)
T 3a79_B 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW----------------KCSVKLF 270 (562)
T ss_dssp SCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH----------------HHHHHHH
T ss_pred cchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH----------------HHHHHHH
Confidence 66666666555666677777777664 22223334445555555555444321 1111111
Q ss_pred cchhhcccCCCCcccEEecccccccCCCCCcc-----cCCCcccEEECCCCccccCCC-cCcCC---CCCCcEEECCCCe
Q 035852 597 LHFVCHETNGTRLTQIINLEDNLLAGEIPDCW-----MNWRYLLVLRLDNNKFTGKLP-TSLGA---LSLLRSLHLRNNN 667 (960)
Q Consensus 597 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~l~~---l~~L~~L~L~~N~ 667 (960)
... ..++|+.|++++|.++|.+|..+ ..++.|+.++++.|.+ .+| ..+.. ..+|++|++++|.
T Consensus 271 -----~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 271 -----QFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp -----HHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred -----Hhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC
Confidence 111 12467777777777777777766 6666777777777666 344 22222 2568888888888
Q ss_pred ecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccc--cCchhhcCCCCCCeEeecCCcCcccc
Q 035852 668 LSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHG--VFPLELCHLAFLKILVLAGNNLSGTI 745 (960)
Q Consensus 668 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~--~~p~~l~~l~~L~~L~Ls~N~l~g~i 745 (960)
+.... ....+++|++|++++|++++.+|.++. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+
T Consensus 343 ~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 419 (562)
T 3a79_B 343 FIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419 (562)
T ss_dssp CCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC
T ss_pred ccccc--CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 75321 125778888888888888877777765 68888888888888886 34567888999999999999998767
Q ss_pred Ccc-ccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCch
Q 035852 746 PTC-ISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA 824 (960)
Q Consensus 746 p~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 824 (960)
|.. +..+ ++|+.|+|++|++++.+|.
T Consensus 420 ~~~~~~~l-----------------------------------------------------~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 420 YDRTCAWA-----------------------------------------------------ESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp SSCCCCCC-----------------------------------------------------TTCCEEECCSSCCCGGGGS
T ss_pred ChhhhcCc-----------------------------------------------------ccCCEEECCCCCCCcchhh
Confidence 754 3322 3358999999999988887
Q ss_pred hhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC-CCCCCCCCEEEcccCcceecCCC
Q 035852 825 EITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN-TVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 825 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
.+. ++|+.|||++|+++ .||+.+..+++|+.|||++|+++ .+|.. +..+++|+.|++++|++.+..|.
T Consensus 447 ~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp SCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 665 78999999999998 78988889999999999999999 57776 89999999999999999987764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.2e-41 Score=396.46 Aligned_cols=462 Identities=19% Similarity=0.226 Sum_probs=259.6
Q ss_pred cEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeC
Q 035852 241 VTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSS 320 (960)
Q Consensus 241 ~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 320 (960)
+++++++|.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 44555555443 1333322 4555556665555555555566666666666666666655555666666666666666
Q ss_pred ccccccccHHHHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCC
Q 035852 321 NRLQGRISSVLLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSN 399 (960)
Q Consensus 321 n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 399 (960)
|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|+++..
T Consensus 110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~------------------------ 161 (562)
T 3a79_B 110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL------------------------ 161 (562)
T ss_dssp SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT------------------------
T ss_pred CcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC------------------------
Confidence 6665 45522 56666666666666654 2345666666665555444444321
Q ss_pred CCCCCchhhhhcCCCCC--CEEecCCCcC--CCCCcccccCCC-CCcEEecCCcccccccchhhhcCCCCCcEeeccCcc
Q 035852 400 TTLSGSLTNQIGKFKVL--NSVDLSENSI--SGQVPWSLGKLS-SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNS 474 (960)
Q Consensus 400 n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~ 474 (960)
.+..+++| ++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.++...+..+++|+.+++++|+
T Consensus 162 ---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 162 ---------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp ---------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred ---------chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 11222233 5555555555 555555554433 111345566665555555445555555555555542
Q ss_pred ccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCC
Q 035852 475 LTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN 554 (960)
Q Consensus 475 l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 554 (960)
..... + ......+...+.|+.+++.++.+.+.. +.+..+
T Consensus 233 ~~~~~-------------------l-~~~~~~l~~l~~L~~L~L~~~~l~~~~--------------------~~~~~~- 271 (562)
T 3a79_B 233 ENCQR-------------------L-MTFLSELTRGPTLLNVTLQHIETTWKC--------------------SVKLFQ- 271 (562)
T ss_dssp TTHHH-------------------H-HHHHHHHHSCSSCEEEEEEEEEECHHH--------------------HHHHHH-
T ss_pred cccch-------------------H-HHHHHHHhccCcceEEEecCCcCcHHH--------------------HHHHHH-
Confidence 10000 0 000011222333333333333222110 000000
Q ss_pred ccccCCCCeEEcccCcCcCCCCCCC-----ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCC-Ccc
Q 035852 555 LTEVSQLGTLDLSANNLSGQLPLLA-----SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIP-DCW 628 (960)
Q Consensus 555 l~~l~~L~~L~Ls~n~l~~~~p~~~-----~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l 628 (960)
....++|++|++++|.++|.+|... .+++ .|+.++++.+.+ .+| ..+
T Consensus 272 ~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~-------------------------~L~~~~~~~~~~--~~p~~~~ 324 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALK-------------------------SLMIEHVKNQVF--LFSKEAL 324 (562)
T ss_dssp HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC-------------------------EEEEEEEEECCC--SSCHHHH
T ss_pred hhhcccccEEEEeccEeeccccchhhhcccccch-------------------------heehhhccccee--ecChhhh
Confidence 0111234444444444444444322 2222 222222222222 122 111
Q ss_pred cC---CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccc--cCchHHhhc
Q 035852 629 MN---WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG--NVPAWIGER 703 (960)
Q Consensus 629 ~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~ 703 (960)
.. ..+|++|++++|.+.... ....+++|++|++++|++++.+|..+.++++|++|++++|++++ .+|..+. .
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~ 401 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-N 401 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-T
T ss_pred hhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc-C
Confidence 11 135666666666654221 12556777777777777777677777777777777777777774 2233343 6
Q ss_pred CcccceeeeccccccccCch-hhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcccc
Q 035852 704 FPRMIILILRSNKFHGVFPL-ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNI 782 (960)
Q Consensus 704 l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (960)
+++|++|++++|++++.+|. .+..+++|+.|++++|++++.+|..+.
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-------------------------------- 449 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-------------------------------- 449 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--------------------------------
T ss_pred CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--------------------------------
Confidence 77777788887777775554 467788899999999998877665442
Q ss_pred ccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchh-hccCCCCCEEEC
Q 035852 783 TEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN-IGAMALLESLDF 861 (960)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~L 861 (960)
+.|+.|||++|+++ .||..++.+++|+.|||++|+++ .+|.. ++.+++|+.|++
T Consensus 450 -----------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 450 -----------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp -----------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEEC
T ss_pred -----------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEe
Confidence 12488999999998 89998889999999999999999 57776 899999999999
Q ss_pred cCCcccccCC
Q 035852 862 SSNRLEGEIP 871 (960)
Q Consensus 862 s~N~l~g~iP 871 (960)
++|++++..|
T Consensus 505 ~~N~~~c~c~ 514 (562)
T 3a79_B 505 HDNPWDCTCP 514 (562)
T ss_dssp CSCCBCCCHH
T ss_pred cCCCcCCCcc
Confidence 9999998766
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.8e-39 Score=371.50 Aligned_cols=390 Identities=22% Similarity=0.279 Sum_probs=248.5
Q ss_pred CcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEee
Q 035852 390 DVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFY 469 (960)
Q Consensus 390 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 469 (960)
+.|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..++++++|+.+++..|.. .++++|+
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~L~ 77 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHELE 77 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSEEE
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCEEE
Confidence 3468888888888 68888899999999999999999888998888887764444443321 3345566
Q ss_pred ccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCcccc
Q 035852 470 ASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIH 549 (960)
Q Consensus 470 l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 549 (960)
+++|.++.... -.++|++|++++|.+.+ +|.. .++|+.|++++|++.+ +|.. .++|++|++++|+++
T Consensus 78 l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 78 LNNLGLSSLPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLE 144 (454)
T ss_dssp CTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCS
T ss_pred ecCCccccCCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCC
Confidence 66665554322 12466666676666665 4432 3677788888877754 3321 257888888888888
Q ss_pred ccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc
Q 035852 550 GEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM 629 (960)
Q Consensus 550 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 629 (960)
+ +|.+..+++|++|++++|++++ +|..+.+|++|++++|++++ +| .+.++++|+.|++++|++++ +|...
T Consensus 145 ~-lp~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 145 K-LPELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp S-CCCCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred C-CcccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 6 6678888888888888888886 66667788888888888876 33 35678888888888888886 44432
Q ss_pred CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII 709 (960)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~ 709 (960)
++|++|++++|+++ .+| .++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. +++|++
T Consensus 215 --~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~----~~~L~~ 281 (454)
T 1jl5_A 215 --LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL----PQSLTF 281 (454)
T ss_dssp --TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC----CTTCCE
T ss_pred --CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc----cCcCCE
Confidence 57888888888887 677 47888888888888888884 5543 3788888888888884 6642 478888
Q ss_pred eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789 (960)
Q Consensus 710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (960)
|++++|++++. |. ..++|+.|++++|++++ +|. +
T Consensus 282 L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~~----~------------------------------------- 315 (454)
T 1jl5_A 282 LDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LCD----L------------------------------------- 315 (454)
T ss_dssp EECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-ECC----C-------------------------------------
T ss_pred EECcCCccCcc-cC---cCCcCCEEECcCCcCCc-ccC----C-------------------------------------
Confidence 88888888862 21 12678888888888864 221 1
Q ss_pred eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc-
Q 035852 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG- 868 (960)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g- 868 (960)
.++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.||+++|+++|
T Consensus 316 ---------------~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 316 ---------------PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp ---------------CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC
T ss_pred ---------------cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC
Confidence 0134778888888875 6654 467888888888887 4666 46778888888888887
Q ss_pred -cCCCCCCCC-------------CCCCEEEcccCccee--cCCCC
Q 035852 869 -EIPKNTVNL-------------VFLSHFNISYNNLSG--EVPDE 897 (960)
Q Consensus 869 -~iP~~l~~l-------------~~L~~l~ls~N~l~g--~iP~~ 897 (960)
.+|.+++++ ++|++|++++|+++| .||.+
T Consensus 373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp CCCCTTCCEEECCC-------------------------------
T ss_pred CCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 778877777 889999999999998 88875
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.6e-39 Score=365.54 Aligned_cols=258 Identities=23% Similarity=0.305 Sum_probs=141.9
Q ss_pred cccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecc
Q 035852 537 QFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE 616 (960)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls 616 (960)
+|++|++++|++++ +|.+..+++|++|++++|.+++ +|..+++|++|++++|++. .+| .+..++.|+.|+++
T Consensus 174 ~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n~l~-~lp-----~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNNILE-ELP-----ELQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSSCCS-SCC-----CCTTCTTCCEEECC
T ss_pred cccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCCcCC-ccc-----ccCCCCCCCEEECC
Confidence 34444555554444 3445555566666666666654 4444556777777777666 344 24567888888888
Q ss_pred cccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccC
Q 035852 617 DNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNV 696 (960)
Q Consensus 617 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 696 (960)
+|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +
T Consensus 246 ~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i 312 (454)
T 1jl5_A 246 NNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-L 312 (454)
T ss_dssp SSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-E
T ss_pred CCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-c
Confidence 888875 4443 3688888999988885 5654 3788889999888886 2221 2578888888888874 3
Q ss_pred chHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCC
Q 035852 697 PAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFP 776 (960)
Q Consensus 697 p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 776 (960)
+. ..++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+
T Consensus 313 ~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l------------------------ 356 (454)
T 1jl5_A 313 CD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LP------------------------ 356 (454)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CC------------------------
T ss_pred cC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hh------------------------
Confidence 31 12578888888888886 5544 578888888888887 3554 11
Q ss_pred CCccccccccccceEEEecccchhhhhhhccccEEEccCCcccc--cCchhhhhhcccceeecCcccCcccCchhhccCC
Q 035852 777 GKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG--EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA 854 (960)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 854 (960)
++|+.|++++|++++ .+|.+++++ +.|.+.|.+|.. ++
T Consensus 357 -----------------------------~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~ 396 (454)
T 1jl5_A 357 -----------------------------QNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQ 396 (454)
T ss_dssp -----------------------------TTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------
T ss_pred -----------------------------hhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cC
Confidence 234788888888888 788766543 457788888864 57
Q ss_pred CCCEEECcCCcccc--cCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 855 LLESLDFSSNRLEG--EIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 855 ~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
+|+.||+++|+++| .||.++ +.|.+.+|.+.+.+|..
T Consensus 397 ~L~~L~ls~N~l~~~~~iP~sl------~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 397 NLKQLHVETNPLREFPDIPESV------EDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ---------------------------------------------
T ss_pred cCCEEECCCCcCCccccchhhH------hheeCcCcccCCccccC
Confidence 89999999999998 888764 55667888888877753
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-39 Score=354.46 Aligned_cols=293 Identities=27% Similarity=0.464 Sum_probs=234.9
Q ss_pred CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCcc--ccceeeCCCC--CceEEEeCCCCCCcCCCccccccccccc--c
Q 035852 30 GCVESEREALLSFKQDLEDPSNRLATWIGDGDCCK--WAGVICDNFT--GHVLELHLGNPWEDDHGHQAKESSALVG--K 103 (960)
Q Consensus 30 ~~~~~~~~~ll~~k~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~~g--~ 103 (960)
.|.++|++||++||+++.||. .+++|..+++||. |+||+|+..+ ++|++|+++++ .+.| .
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~-------------~l~~~~~ 67 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-------------NLPKPYP 67 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECC-------------CCSSCEE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCC-------------CccCCcc
Confidence 599999999999999998886 7899976679998 9999998655 89999999986 7788 8
Q ss_pred cCccccCCCCCCEEeCCC-CCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852 104 INPALLDFEHLIYLNLSY-NDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182 (960)
Q Consensus 104 i~~~l~~l~~L~~L~Ls~-n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~ 182 (960)
+|+.+.++++|++|++++ |.+.+. +|..++++++|++|+|++|++.+.+|..++++++|++|++++|.++..
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------ 140 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT------ 140 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC------
T ss_pred cChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc------
Confidence 999999999999999995 888874 899999999999999999999999999999999999999999876532
Q ss_pred cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCC-CCcEEeCCCCCCCCChhHHhhcC
Q 035852 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFS-SLVTLDLSHNQFDNSLIATQLYG 261 (960)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~ 261 (960)
.+..+..+++|++|++++|++++..|..+.+++ +|++|++++|.++ +.+|..+..
T Consensus 141 -----------------------~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~ 196 (313)
T 1ogq_A 141 -----------------------LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFAN 196 (313)
T ss_dssp -----------------------CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGG
T ss_pred -----------------------CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhC
Confidence 234455666666777777777666666777776 7777777777776 566777777
Q ss_pred CCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEE
Q 035852 262 LCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSL 341 (960)
Q Consensus 262 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L 341 (960)
++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+| ..+..+++|++|
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L 273 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSL 273 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEE
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEE
Confidence 76 77777777777777777777777788888877777766554 6777778888888887777777 667777788888
Q ss_pred eCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852 342 DLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371 (960)
Q Consensus 342 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 371 (960)
++++|++++.+|.. ..+++|+.+++++|+
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 88888777777765 666777666666665
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.6e-38 Score=361.57 Aligned_cols=390 Identities=20% Similarity=0.194 Sum_probs=259.4
Q ss_pred cEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccC
Q 035852 393 ESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASR 472 (960)
Q Consensus 393 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~ 472 (960)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666666665 3444 2 367888888888888777777888888888888888877677666677777777777777
Q ss_pred ccccccCCCCCcccccceEEecccccCCCCCCcc--cccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccc
Q 035852 473 NSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSW--LHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHG 550 (960)
Q Consensus 473 n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 550 (960)
|+++...+..+..+.+|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++..+++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 7776665555555556666666665554433222 44555555555555555444444444444555555555554444
Q ss_pred cCC-CccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCC---
Q 035852 551 EIP-NLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPD--- 626 (960)
Q Consensus 551 ~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~--- 626 (960)
..+ .+..+. ...++.+++++|.+.+..+.
T Consensus 169 ~~~~~l~~l~-----------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 169 ICEEDLLNFQ-----------------------------------------------GKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp CCTTTSGGGT-----------------------------------------------TCEEEEEECTTCBCTTCSTTCTT
T ss_pred cChhhhhccc-----------------------------------------------cccccccccccCcccccchhhcc
Confidence 333 122210 01222233333332222111
Q ss_pred -----cccCCCcccEEECCCCccccCCCcCcCCC---CCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCch
Q 035852 627 -----CWMNWRYLLVLRLDNNKFTGKLPTSLGAL---SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPA 698 (960)
Q Consensus 627 -----~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l---~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 698 (960)
.+..+++|++|++++|++++..|..+... ++|+.|++++|.+.+... ..+.+.+..+.
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~ 267 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNF 267 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTT
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccc
Confidence 12234556666666666665555544332 566666666665543211 11111111111
Q ss_pred HHh-hcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCC
Q 035852 699 WIG-ERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPG 777 (960)
Q Consensus 699 ~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 777 (960)
.+. -..++|+.|++++|++++.+|..+..+++|+.|++++|++++..|..++.++.|
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------- 325 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------- 325 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence 111 024688889999999888888889999999999999999988777777665544
Q ss_pred CccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCC
Q 035852 778 KFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLE 857 (960)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 857 (960)
+.|+|++|++++..|..++++++|+.|||++|++++.+|..++.+++|+
T Consensus 326 -------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 326 -------------------------------LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp -------------------------------CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred -------------------------------CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 8999999999988899999999999999999999999999999999999
Q ss_pred EEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCccc
Q 035852 858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQF 900 (960)
Q Consensus 858 ~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~ 900 (960)
.|||++|++++..|..+..+++|++|++++|+++|.+|.-..+
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 9999999999877777899999999999999999999975444
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-37 Score=354.39 Aligned_cols=393 Identities=20% Similarity=0.230 Sum_probs=262.9
Q ss_pred EEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852 267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346 (960)
Q Consensus 267 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n 346 (960)
.++.++++++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4445555544 3444 2 2566777777777766666667777777777777776665665456677777777777777
Q ss_pred CCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhh--hcCCCCCCEEecCCC
Q 035852 347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQ--IGKFKVLNSVDLSEN 424 (960)
Q Consensus 347 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n 424 (960)
.+++..|..+..+++| ++|++++|.+++.++.. +..+++|++|++++|
T Consensus 90 ~l~~~~~~~~~~l~~L------------------------------~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 90 QFLQLETGAFNGLANL------------------------------EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TTCEECTTTTTTCTTC------------------------------CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred ccCccChhhccCcccC------------------------------CEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 7776666677766666 44444444444444433 666677777777777
Q ss_pred cCCCCCccc-ccCCCCCcEEecCCcccccccchhhhcCC--CCCcEeeccCccccccCCCCCcccccceEEecccccCCC
Q 035852 425 SISGQVPWS-LGKLSSLRYLDISNNQLNGTVSEIHFANL--SSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGP 501 (960)
Q Consensus 425 ~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~ 501 (960)
.+++..|.. +.++++|++|++++|++.+..+. .+..+ .+|+.+++++|.+.......+..
T Consensus 140 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------------- 202 (455)
T 3v47_A 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGW---------------- 202 (455)
T ss_dssp BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------------
T ss_pred ccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccc----------------
Confidence 776665654 56677777777777766654433 23322 34444444444433222111000
Q ss_pred CCCcccccCccCcEEeccCCCCcCCCchhHhhcC--CcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCC
Q 035852 502 PFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSI--TQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLA 579 (960)
Q Consensus 502 ~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 579 (960)
.....+..+++|++|++++|++.+.+|..+.... ++|+.|++++|...+...... .+.+..+.
T Consensus 203 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~~~~~~-- 267 (455)
T 3v47_A 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-------------NFKDPDNF-- 267 (455)
T ss_dssp HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-------------SSCCCCTT--
T ss_pred cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh-------------hhccCccc--
Confidence 0000122345666667777666666665554332 556666666665443211111 11100000
Q ss_pred ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCc
Q 035852 580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLR 659 (960)
Q Consensus 580 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 659 (960)
.+.+ ...+.|+.+++++|++++.+|..+..+++|++|++++|++++..|..|+.+++|+
T Consensus 268 -----------~~~~----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 268 -----------TFKG----------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp -----------TTGG----------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred -----------cccc----------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence 0000 1146788899999999988999999999999999999999988899999999999
Q ss_pred EEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCC
Q 035852 660 SLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGN 739 (960)
Q Consensus 660 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 739 (960)
+|++++|++++..|..|.++++|++|++++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 999999999988889999999999999999999988787776 7999999999999999877777899999999999999
Q ss_pred cCccccCc
Q 035852 740 NLSGTIPT 747 (960)
Q Consensus 740 ~l~g~ip~ 747 (960)
++++.+|.
T Consensus 406 ~l~~~~~~ 413 (455)
T 3v47_A 406 PWDCSCPR 413 (455)
T ss_dssp CBCCCTTT
T ss_pred CcccCCCc
Confidence 99998884
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.8e-36 Score=340.89 Aligned_cols=346 Identities=18% Similarity=0.230 Sum_probs=178.3
Q ss_pred CCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCE
Q 035852 212 ALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRH 291 (960)
Q Consensus 212 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 291 (960)
.+++|++|++++|++++.+ ++.+++|++|++++|.++ +. + ++.+++|++|++++|++++ +| ++.+++|++
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~-~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~ 131 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLT-NL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTY 131 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCS-CC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCc-ee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCE
Confidence 3344444444444444431 444455555555555544 21 1 4445555555555555543 22 455555555
Q ss_pred EeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852 292 LDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371 (960)
Q Consensus 292 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 371 (960)
|++++|++++. + ++.+++|++|++++|...+.++ +..+++|++|++++|++++ +| +..+++|
T Consensus 132 L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L--------- 193 (457)
T 3bz5_A 132 LNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-LD--VSQNKLL--------- 193 (457)
T ss_dssp EECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC-CC--CTTCTTC---------
T ss_pred EECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce-ec--cccCCCC---------
Confidence 55555555542 1 4455555555555554333332 3445555555555555553 22 3444444
Q ss_pred cCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451 (960)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 451 (960)
+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|++|++++|+++
T Consensus 194 ---------------------~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 194 ---------------------NRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ---------------------CEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ---------------------CEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 3333333333332 24455666666666666664 34 555666666666666665
Q ss_pred cccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhH
Q 035852 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRF 531 (960)
Q Consensus 452 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~ 531 (960)
+.. ...+++|+.|+++.| +|+.|++++|...+.+|
T Consensus 247 ~~~----~~~l~~L~~L~l~~n--------------------------------------~L~~L~l~~n~~~~~~~--- 281 (457)
T 3bz5_A 247 ELD----VSTLSKLTTLHCIQT--------------------------------------DLLEIDLTHNTQLIYFQ--- 281 (457)
T ss_dssp CCC----CTTCTTCCEEECTTC--------------------------------------CCSCCCCTTCTTCCEEE---
T ss_pred CcC----HHHCCCCCEEeccCC--------------------------------------CCCEEECCCCccCCccc---
Confidence 421 233444444443332 22333333333333333
Q ss_pred hhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCccc
Q 035852 532 WKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQ 611 (960)
Q Consensus 532 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~ 611 (960)
...+++|+.|++++|...+.+|....+|+.+++++ ++.|+
T Consensus 282 -----------------------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-----------------~~~L~ 321 (457)
T 3bz5_A 282 -----------------------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-----------------NPKLV 321 (457)
T ss_dssp -----------------------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-----------------CTTCC
T ss_pred -----------------------ccccccCCEEECCCCcccceeccCCCcceEechhh-----------------cccCC
Confidence 22334455555555554444444444455554443 24567
Q ss_pred EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCc
Q 035852 612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE 691 (960)
Q Consensus 612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (960)
.|++++|++++. + +.++++|+.|++++|++++ ++.|+.|++++|++.|. .++..|+.+++++|+
T Consensus 322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~ 385 (457)
T 3bz5_A 322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS 385 (457)
T ss_dssp EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB
T ss_pred EEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc
Confidence 777777777763 2 6777777777777777764 24456666777777765 345567777777777
Q ss_pred ccccCchHHhhcCcccceeeec
Q 035852 692 FSGNVPAWIGERFPRMIILILR 713 (960)
Q Consensus 692 l~g~ip~~~~~~l~~L~~L~L~ 713 (960)
++|.||..+.....++....-+
T Consensus 386 l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 386 LTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp EEEECCTTCBCTTSCCCEEEES
T ss_pred EEEEcChhHhcccCceeeccCC
Confidence 7777776655434444443333
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.9e-36 Score=329.90 Aligned_cols=259 Identities=28% Similarity=0.531 Sum_probs=243.0
Q ss_pred CcccEEecccccccC--CCCCcccCCCcccEEECCC-CccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcE
Q 035852 608 RLTQIINLEDNLLAG--EIPDCWMNWRYLLVLRLDN-NKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELET 684 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 684 (960)
..++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..++.+++|++|++++|++++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 568889999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCC-CCCeEeecCCcCccccCccccccccchhccCCCC
Q 035852 685 IDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLA-FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDS 763 (960)
Q Consensus 685 L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~ 763 (960)
|++++|++++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|+++|.+|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 99999999999999887 799999999999999999999999998 999999999999999998776543 3
Q ss_pred cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852 764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS 843 (960)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 843 (960)
+.|+|++|++++.+|..++.+++|+.|+|++|+++
T Consensus 200 ---------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 200 ---------------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ---------------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ---------------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 89999999999999999999999999999999999
Q ss_pred ccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCccccCCc
Q 035852 844 GRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPVLKKLC 923 (960)
Q Consensus 844 g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c 923 (960)
+.+|. ++.+++|+.|||++|+++|.+|..+.+++.|++|++++|+++|.||...++.++....+.||+.+||.|+. .|
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence 88876 89999999999999999999999999999999999999999999999988999999999999999999886 57
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-35 Score=337.48 Aligned_cols=360 Identities=20% Similarity=0.189 Sum_probs=234.6
Q ss_pred hhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcc
Q 035852 406 LTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVP 485 (960)
Q Consensus 406 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 485 (960)
.+..++++++|++|++++|.+++. | .+..+++|++|++++|++++. + +..+++|++|++++|.++... +..
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~~---~~~ 104 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNLD---VTP 104 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCceee---cCC
Confidence 334556666777777777766643 4 566667777777777766642 2 556666667776666666542 455
Q ss_pred cccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEE
Q 035852 486 VFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLD 565 (960)
Q Consensus 486 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 565 (960)
+++|++|++++|.+.+. + +..+++|++|++++|++.+ ++ +..+++|++|++++|...+.+ .+..+++|+.|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc-ccccCCcCCEEE
Confidence 56666666666666553 2 5566666666666666655 22 345666667777666554444 355566666666
Q ss_pred cccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccc
Q 035852 566 LSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFT 645 (960)
Q Consensus 566 Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 645 (960)
+++|++++.....+++|+.|++++|++++. .+..++.|+.|++++|++++ +| +..+++|++|++++|+++
T Consensus 177 ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 177 CSFNKITELDVSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp CCSSCCCCCCCTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred CCCCccceeccccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 666666653322345566666666655542 24445666666666666665 34 556666666666666666
Q ss_pred cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhh
Q 035852 646 GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLEL 725 (960)
Q Consensus 646 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 725 (960)
+.. ++.+++|+.|++++| +|+.|++++|++.|.+|. . .+++|+.|++++|++.+.+|.
T Consensus 247 ~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~--~-~l~~L~~L~Ls~n~~l~~l~~-- 304 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA--E-GCRKIKELDVTHNTQLYLLDC-- 304 (457)
T ss_dssp CCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC--T-TCTTCCCCCCTTCTTCCEEEC--
T ss_pred CcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc--c-ccccCCEEECCCCcccceecc--
Confidence 432 344556666666554 456778888888777773 2 567777777777776666663
Q ss_pred cCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhh
Q 035852 726 CHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL 805 (960)
Q Consensus 726 ~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (960)
..+.|+.|++++|
T Consensus 305 -~~~~L~~L~l~~~------------------------------------------------------------------ 317 (457)
T 3bz5_A 305 -QAAGITELDLSQN------------------------------------------------------------------ 317 (457)
T ss_dssp -TTCCCSCCCCTTC------------------------------------------------------------------
T ss_pred -CCCcceEechhhc------------------------------------------------------------------
Confidence 2344555555544
Q ss_pred ccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEc
Q 035852 806 RLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNI 885 (960)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~l 885 (960)
+.|+.|++++|+|+| +| ++++++|+.||+++|+++| + +.|+.|++++|+++|. +++..|..+++
T Consensus 318 ~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-l-------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-F-------SSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-C-------TTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-c-------cccccccccCCcEEec-----ceeeecCcccc
Confidence 234889999999997 44 8899999999999999987 2 4566778999999987 35567888899
Q ss_pred ccCcceecCCCC
Q 035852 886 SYNNLSGEVPDE 897 (960)
Q Consensus 886 s~N~l~g~iP~~ 897 (960)
++|+++|.||..
T Consensus 382 ~~N~l~g~ip~~ 393 (457)
T 3bz5_A 382 TNNSLTIAVSPD 393 (457)
T ss_dssp BTTBEEEECCTT
T ss_pred ccCcEEEEcChh
Confidence 999999999975
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.4e-33 Score=326.00 Aligned_cols=345 Identities=24% Similarity=0.345 Sum_probs=207.6
Q ss_pred CCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEE
Q 035852 413 FKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL 492 (960)
Q Consensus 413 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 492 (960)
+++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.++....
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~------------ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP------------ 107 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG------------
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh------------
Confidence 3455666666665552 33 35555666666666666553322 4555555555555554443221
Q ss_pred ecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCc
Q 035852 493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572 (960)
Q Consensus 493 ~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 572 (960)
+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++.+..+++|+.|+++ |.+.
T Consensus 108 --------------~~~l~~L~~L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 108 --------------LANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp --------------GTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCC
T ss_pred --------------hcCCCCCCEEECCCCCCCCC-hH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-Cccc
Confidence 33334444444444444332 11 3445556666666665553 2335555555555553 2222
Q ss_pred CCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCc
Q 035852 573 GQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSL 652 (960)
Q Consensus 573 ~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 652 (960)
+.. .+.+++.|+.|++++|.+++. ..+..+++|++|++++|.+++..| +
T Consensus 169 ~~~---------------------------~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 217 (466)
T 1o6v_A 169 DLK---------------------------PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L 217 (466)
T ss_dssp CCG---------------------------GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred Cch---------------------------hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--c
Confidence 111 123345555555555555432 235666677777777777765444 5
Q ss_pred CCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCC
Q 035852 653 GALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLK 732 (960)
Q Consensus 653 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 732 (960)
+.+++|+.|++++|++++. +.+..+++|++|++++|++++..| +. .+++|+.|++++|++++..+ +..+++|+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 6667777777777777642 346677777777777777775433 33 57777777777777775444 66777788
Q ss_pred eEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEE
Q 035852 733 ILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNID 812 (960)
Q Consensus 733 ~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 812 (960)
.|++++|++++..| ++. +++|+.|+
T Consensus 291 ~L~L~~n~l~~~~~--~~~-----------------------------------------------------l~~L~~L~ 315 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISN-----------------------------------------------------LKNLTYLT 315 (466)
T ss_dssp EEECCSSCCSCCGG--GGG-----------------------------------------------------CTTCSEEE
T ss_pred eEEcCCCcccCchh--hcC-----------------------------------------------------CCCCCEEE
Confidence 88888777765333 222 23347788
Q ss_pred ccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852 813 LSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 813 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
|++|++++..| ++.+++|+.|++++|.+++. +.++++++|+.|++++|++++.+| +.+++.|+.|++++|++++
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888876655 67778888888888887764 357778888888888888887776 6777888888888888776
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-33 Score=324.62 Aligned_cols=297 Identities=26% Similarity=0.351 Sum_probs=221.8
Q ss_pred CCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCC-CCccCcEEEcccccccccccchhhcccCCCCcccEE
Q 035852 535 ITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQII 613 (960)
Q Consensus 535 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L 613 (960)
+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+. .+++|++|++++|++.+. + .+..+++|+.|
T Consensus 89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L 161 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-S-----ALSGLTSLQQL 161 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCC-G-----GGTTCTTCSEE
T ss_pred cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCC-h-----hhccCCcccEe
Confidence 3344444444444433332 34444444444444444433221 134555555555555431 1 25568889999
Q ss_pred ecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc
Q 035852 614 NLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693 (960)
Q Consensus 614 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (960)
+++ |.+.+.. .+.++++|++|++++|++++. ..+..+++|++|++++|.+++..| ++.+++|++|++++|+++
T Consensus 162 ~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 986 5555433 388999999999999999853 358899999999999999997655 788999999999999998
Q ss_pred ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCC
Q 035852 694 GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDF 773 (960)
Q Consensus 694 g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~ 773 (960)
+ ++ .+. .+++|+.|++++|++++..| +..+++|+.|++++|++++..| +..+
T Consensus 235 ~-~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l--------------------- 286 (466)
T 1o6v_A 235 D-IG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL--------------------- 286 (466)
T ss_dssp C-CG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC---------------------
T ss_pred c-ch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC---------------------
Confidence 4 55 344 79999999999999997765 8899999999999999986433 3333
Q ss_pred CCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccC
Q 035852 774 SFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAM 853 (960)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l 853 (960)
+.|+.|++++|++++..| ++.+++|+.|+|++|++++..| ++.+
T Consensus 287 --------------------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 287 --------------------------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp --------------------------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred --------------------------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 345899999999997554 8999999999999999998776 8899
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCC
Q 035852 854 ALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDE 912 (960)
Q Consensus 854 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 912 (960)
++|+.|++++|++++. ..++++++|+.|++++|+++|.+| -.++..+......+|+
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 9999999999999975 468899999999999999999888 3444455444455554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=326.44 Aligned_cols=324 Identities=17% Similarity=0.131 Sum_probs=169.8
Q ss_pred cccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCCcccE
Q 035852 537 QFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQI 612 (960)
Q Consensus 537 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~ 612 (960)
+++.|++++|++++..+ .+..+++|++|++++|.+++..|.. +++|++|++++|++++..+ ..+.++++|+.
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~ 108 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL----GVFTGLSNLTK 108 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT----TSSTTCTTCCE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc----ccccCCCCCCE
Confidence 45555555555554443 3455555555555555554443322 1223333333333322111 11223444444
Q ss_pred EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692 (960)
Q Consensus 613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (960)
|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++..+..+.++++|+.|++++|++
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 44444444444444444444444444444444444444444444444444444444433333344444444444444444
Q ss_pred cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCC
Q 035852 693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSD 772 (960)
Q Consensus 693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~ 772 (960)
.+..+..+. .+++|+.|++++|++.+.+|.......+|+.|++++|++++..+..+
T Consensus 189 ~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----------------------- 244 (477)
T 2id5_A 189 NAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV----------------------- 244 (477)
T ss_dssp CEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----------------------
T ss_pred cEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----------------------
Confidence 433222222 34444444444444444444443334444444444444442111122
Q ss_pred CCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhcc
Q 035852 773 FSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGA 852 (960)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~ 852 (960)
..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..|..
T Consensus 245 ------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 245 ------------------------------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp ------------------------------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred ------------------------------cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 22344578888888888777777788888888888888888877888888
Q ss_pred CCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCccCcc
Q 035852 853 MALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLCGPV 918 (960)
Q Consensus 853 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 918 (960)
+++|+.|||++|++++..|..+.++++|+.|++++|++.+..+....+.......+.|+...|+.|
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 888888888888888766666777788888888888877654322112222233455666666543
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-31 Score=311.22 Aligned_cols=309 Identities=20% Similarity=0.205 Sum_probs=229.5
Q ss_pred ccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcc
Q 035852 103 KINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLG 182 (960)
Q Consensus 103 ~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~ 182 (960)
.+|..+. +++++|+|++|.+++. .+..+..+++|++|+|++|.+.+..|..++++++|++|++++|.++.++..
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--- 98 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG--- 98 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT---
T ss_pred cCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc---
Confidence 3444442 5899999999999875 678899999999999999999998899999999999999999988866543
Q ss_pred cccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCC
Q 035852 183 WLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGL 262 (960)
Q Consensus 183 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l 262 (960)
.+.++++|++|++++|.+.... +..+..+++|++|++++|.+++..+..|.++++|++|++++|.++ ...+..+..+
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l 175 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTC
T ss_pred cccCCCCCCEEECCCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhccc
Confidence 3456788888888888777642 445677788888888888888777777888888888888888876 5556667778
Q ss_pred CCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEe
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLD 342 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~ 342 (960)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|.......+|+.|++++|.++ .++...+..+++|++|+
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEE
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeE
Confidence 88888888888877766667777888888888877777666666666667788888877777 55656677777777777
Q ss_pred CCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecC
Q 035852 343 LSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLS 422 (960)
Q Consensus 343 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 422 (960)
+++|.+++..+..+..+++| ++|++++|.+++..|..+..+++|+.|+++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRL------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTC------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred CCCCcCCccChhhccccccC------------------------------CEEECCCCccceECHHHhcCcccCCEEECC
Confidence 77777776555556666555 444555555555555566666777777777
Q ss_pred CCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852 423 ENSISGQVPWSLGKLSSLRYLDISNNQLN 451 (960)
Q Consensus 423 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 451 (960)
+|.+++..+..+..+++|++|++++|.+.
T Consensus 305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77766555555666666666666666655
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=7.6e-32 Score=321.10 Aligned_cols=331 Identities=20% Similarity=0.175 Sum_probs=264.2
Q ss_pred CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEE
Q 035852 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVL 585 (960)
Q Consensus 510 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L 585 (960)
+.+++.+++++|.+ +.+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..|.. +++|++|
T Consensus 50 l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34556666666655 44566666666777777777777766655 5666777777777777777666543 4667777
Q ss_pred EcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852 586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN 665 (960)
Q Consensus 586 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 665 (960)
++++|.+++..+ ..+.++++|+.|++++|.+++..|..+..+++|++|++++|.+++. + ++.+++|+.|++++
T Consensus 129 ~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 129 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSY 201 (597)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCS
T ss_pred EeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhccc
Confidence 777777764322 2245688999999999999999998999999999999999999864 3 56788999999999
Q ss_pred CeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc
Q 035852 666 NNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745 (960)
Q Consensus 666 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 745 (960)
|.+++. ....+|+.|++++|.++ .+|.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+
T Consensus 202 n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~ 270 (597)
T 3oja_B 202 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 270 (597)
T ss_dssp SCCSEE-----ECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred Cccccc-----cCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence 998753 34568999999999998 45543 347899999999999973 67889999999999999999988
Q ss_pred CccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh
Q 035852 746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE 825 (960)
Q Consensus 746 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~ 825 (960)
|..++.++.| +.|+|++|++++ +|..
T Consensus 271 ~~~~~~l~~L-----------------------------------------------------~~L~Ls~N~l~~-l~~~ 296 (597)
T 3oja_B 271 YHPFVKMQRL-----------------------------------------------------ERLYISNNRLVA-LNLY 296 (597)
T ss_dssp SGGGTTCSSC-----------------------------------------------------CEEECTTSCCCE-EECS
T ss_pred HHHhcCccCC-----------------------------------------------------CEEECCCCCCCC-CCcc
Confidence 8887766555 899999999996 6888
Q ss_pred hhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCc
Q 035852 826 ITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDS 905 (960)
Q Consensus 826 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~ 905 (960)
++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..++.|+.|++++|++++..+. ..+..+..
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~ 371 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVAR 371 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCT
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhh
Confidence 888999999999999999 6899999999999999999999864 3 66788999999999999987432 45677777
Q ss_pred cccCCCCCccCcc
Q 035852 906 SSYIGDEYLCGPV 918 (960)
Q Consensus 906 ~~~~gn~~lcg~~ 918 (960)
..+.+++..|+.+
T Consensus 372 ~~~~~~~~~C~~~ 384 (597)
T 3oja_B 372 PAVDDADQHCKID 384 (597)
T ss_dssp TTBCCCCCCCCTT
T ss_pred hccccccccCCcc
Confidence 8889999999863
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.1e-31 Score=300.65 Aligned_cols=331 Identities=20% Similarity=0.176 Sum_probs=258.4
Q ss_pred CccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCC-CccccCCCCeEEcccCcCcCCCCCC---CccCcEE
Q 035852 510 QNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIP-NLTEVSQLGTLDLSANNLSGQLPLL---ASNVMVL 585 (960)
Q Consensus 510 ~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~L~~L 585 (960)
+++++.|++++|.+ +.+|..++..+++|++|++++|.+++..+ .+..+++|++|++++|.+++..|.. +++|++|
T Consensus 44 l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45566666666654 44566666667777777777777766555 5666777777777777777665543 4567777
Q ss_pred EcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852 586 DLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN 665 (960)
Q Consensus 586 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 665 (960)
++++|+++...+ ..+.++++|+.|++++|++++..|..+..+++|++|++++|++++. .+..+++|+.|++++
T Consensus 123 ~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 123 VLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp ECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred ECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 777777663221 2245688999999999999988888899999999999999999854 366788999999999
Q ss_pred CeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcccc
Q 035852 666 NNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTI 745 (960)
Q Consensus 666 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 745 (960)
|.+++. ...++|++|++++|++. .+|.. ..++|+.|++++|++++. ..+..+++|+.|++++|.+++..
T Consensus 196 n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 196 NLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp SCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred cccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 998742 34468999999999998 45654 367999999999999864 57889999999999999999887
Q ss_pred CccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh
Q 035852 746 PTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE 825 (960)
Q Consensus 746 p~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~ 825 (960)
|..+..++.| +.|+|++|++++ +|..
T Consensus 265 ~~~~~~l~~L-----------------------------------------------------~~L~L~~n~l~~-~~~~ 290 (390)
T 3o6n_A 265 YHPFVKMQRL-----------------------------------------------------ERLYISNNRLVA-LNLY 290 (390)
T ss_dssp SGGGTTCSSC-----------------------------------------------------CEEECCSSCCCE-EECS
T ss_pred hhHccccccC-----------------------------------------------------CEEECCCCcCcc-cCcc
Confidence 8777665544 899999999985 6777
Q ss_pred hhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCc
Q 035852 826 ITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDS 905 (960)
Q Consensus 826 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~ 905 (960)
++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++. | +..++.|+.|++++|++.+.-. ...+..+..
T Consensus 291 ~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~ 365 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVAR 365 (390)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCT
T ss_pred cCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHh
Confidence 888999999999999998 5788899999999999999999854 4 6778999999999999987522 234556666
Q ss_pred cccCCCCCccCcc
Q 035852 906 SSYIGDEYLCGPV 918 (960)
Q Consensus 906 ~~~~gn~~lcg~~ 918 (960)
..+.+++..|+.+
T Consensus 366 ~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 366 PAVDDADQHCKID 378 (390)
T ss_dssp TTBCCCCSCCCTT
T ss_pred hcccccCceeccc
Confidence 7788888888754
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=5.7e-31 Score=297.08 Aligned_cols=311 Identities=21% Similarity=0.234 Sum_probs=227.9
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCcc-ccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccC
Q 035852 108 LLDFEHLIYLNLSYNDFKGIQIPR-FLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYD 186 (960)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 186 (960)
-..++++++|+++++.++. +|. .+..+++|++|++++|.+.+..+..++++++|++|++++|.++.+++. .+.+
T Consensus 41 ~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 115 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQN 115 (390)
T ss_dssp SGGGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---TTTT
T ss_pred ccccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH---HhcC
Confidence 3457899999999999885 554 468899999999999999888888999999999999999998876544 3567
Q ss_pred CCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCC
Q 035852 187 LSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLV 266 (960)
Q Consensus 187 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 266 (960)
+++|++|++++|.++.++. ..+.++++|++|++++|.+++.++..+.++++|++|++++|.++ .. .+..+++|+
T Consensus 116 l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~---~~~~l~~L~ 189 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV---DLSLIPSLF 189 (390)
T ss_dssp CTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BC---CGGGCTTCS
T ss_pred CCCCCEEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cc---ccccccccc
Confidence 8889999999998886532 33578889999999999999888888899999999999999887 32 356678899
Q ss_pred EEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852 267 FLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346 (960)
Q Consensus 267 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n 346 (960)
+|++++|.+++ +...++|++|++++|.+... |. ...++|+.|++++|.+++. ..+..+++|++|++++|
T Consensus 190 ~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 190 HANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp EEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS
T ss_pred eeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc---HHHcCCCCccEEECCCC
Confidence 99999888763 34456889999999988765 32 2357889999999988743 46788889999999999
Q ss_pred CCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcC
Q 035852 347 ELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSI 426 (960)
Q Consensus 347 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 426 (960)
.+++..|..+..+++|++|++++|+++. ++..+..+++|++|++++|++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------------~~~~~~~l~~L~~L~L~~n~l 307 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHL 307 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSCCCE-------------------------------EECSSSCCTTCCEEECCSSCC
T ss_pred cCCCcChhHccccccCCEEECCCCcCcc-------------------------------cCcccCCCCCCCEEECCCCcc
Confidence 8888778888888888666666666543 222233445555555555555
Q ss_pred CCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcccc
Q 035852 427 SGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476 (960)
Q Consensus 427 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 476 (960)
+ .+|..+..+++|++|++++|+++.. + +..+++|+.|++++|++.
T Consensus 308 ~-~~~~~~~~l~~L~~L~L~~N~i~~~-~---~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 308 L-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp C-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEE
T ss_pred e-ecCccccccCcCCEEECCCCcccee-C---chhhccCCEEEcCCCCcc
Confidence 4 3344445555555555555554421 1 344455555555555444
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.6e-30 Score=283.67 Aligned_cols=306 Identities=21% Similarity=0.312 Sum_probs=193.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCC
Q 035852 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL 187 (960)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l 187 (960)
+..+++|++|+++++.+.. ++ .++.+++|++|++++|++.+..+ +.++++|++|++++|.++.+ +.+..+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-----~~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-----SALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----GGGTTC
T ss_pred chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-----hHHcCC
Confidence 4567888999999888875 44 37788889999999888776544 88888889998888877654 346777
Q ss_pred CccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852 188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF 267 (960)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 267 (960)
++|++|++++|.+.+.+. +..+++|++|++++|.....++ .+..+++|++|++++|.+. ...+ +..+++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP--IANLTDLYS 181 (347)
T ss_dssp TTCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSE
T ss_pred CcCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh--hccCCCCCE
Confidence 778888888777766422 6677777777777775544443 3677777777777777765 2222 666777777
Q ss_pred EeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCC
Q 035852 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNE 347 (960)
Q Consensus 268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~ 347 (960)
|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ . +..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LS-P-LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSC
T ss_pred EEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Cc-c-hhcCCCCCEEECCCCc
Confidence 77777777643 22 6677777777777777766533 6667777777777777763 33 1 6667777777777776
Q ss_pred CCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC
Q 035852 348 LEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS 427 (960)
Q Consensus 348 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 427 (960)
+++. ..+..+++|++|++++|+++.. ..+..+++|++|++++|.++
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--------------------------------~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--------------------------------SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--------------------------------GGGGGCTTCSEEECCSSCCC
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--------------------------------hhhcCCCCCCEEECcCCcCC
Confidence 6642 3456666665555555554432 12344445555555555554
Q ss_pred CCCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccc
Q 035852 428 GQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSL 475 (960)
Q Consensus 428 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l 475 (960)
+..|..+..+++|++|++++|++++..+ +..+++|++|++++|++
T Consensus 301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 301 NEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI 345 (347)
T ss_dssp GGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred CcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence 4444444445555555555555443322 34444444444444443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.1e-30 Score=308.60 Aligned_cols=311 Identities=20% Similarity=0.224 Sum_probs=228.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852 109 LDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS 188 (960)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~ 188 (960)
..+.+++.+++++|.+... .+..++.+++|++|+|++|.+.+..|..++++++|++|++++|.++.+++. .+.+++
T Consensus 48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~ 123 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVP 123 (597)
T ss_dssp GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCT
T ss_pred ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH---HHcCCC
Confidence 3567899999999988863 344578899999999999999988888999999999999999988876554 346778
Q ss_pred ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEE
Q 035852 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFL 268 (960)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L 268 (960)
+|++|++++|.++.++ +..+..+++|++|++++|.+++.++..|.++++|++|++++|.++ +. .+..+++|++|
T Consensus 124 ~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~---~~~~l~~L~~L 197 (597)
T 3oja_B 124 LLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV---DLSLIPSLFHA 197 (597)
T ss_dssp TCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BC---CGGGCTTCSEE
T ss_pred CCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-Cc---Chhhhhhhhhh
Confidence 8888888888888653 234578888999999999998888888888999999999999887 33 25567888999
Q ss_pred eccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCC
Q 035852 269 DLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNEL 348 (960)
Q Consensus 269 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l 348 (960)
++++|.+.+ +...++|++|++++|.+....+. ..++|+.|++++|.+++. ..+..+++|++|++++|.+
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l 266 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL 266 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc
Confidence 998887763 34556888999998888765332 235788889988888753 4678888888899988888
Q ss_pred CcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC
Q 035852 349 EWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG 428 (960)
Q Consensus 349 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 428 (960)
.+..|..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus 267 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------------------------l~~~~~~l~~L~~L~Ls~N~l~- 314 (597)
T 3oja_B 267 EKIMYHPFVKMQRLERLYISNNRLVA-------------------------------LNLYGQPIPTLKVLDLSHNHLL- 314 (597)
T ss_dssp CEEESGGGTTCSSCCEEECTTSCCCE-------------------------------EECSSSCCTTCCEEECCSSCCC-
T ss_pred CCCCHHHhcCccCCCEEECCCCCCCC-------------------------------CCcccccCCCCcEEECCCCCCC-
Confidence 88888888888888666666555542 2333444555666666666655
Q ss_pred CCcccccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCcccc
Q 035852 429 QVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLT 476 (960)
Q Consensus 429 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~ 476 (960)
.+|..+..+++|++|++++|.+.+. .+..+++|+.|++++|++.
T Consensus 315 ~i~~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 315 HVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CCGGGHHHHTTCSEEECCSSCCCCC----CCCTTCCCSEEECCSSCEE
T ss_pred ccCcccccCCCCCEEECCCCCCCCc----ChhhcCCCCEEEeeCCCCC
Confidence 4455555556666666666655432 1344555555555555544
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.7e-32 Score=295.27 Aligned_cols=279 Identities=17% Similarity=0.207 Sum_probs=205.2
Q ss_pred CCCCHHHHHHHHHhhhcC-CCCCCCCCCC----CCCCCCccccceeeCC--------CCCceEEEeCCCCCCcCCCcccc
Q 035852 29 VGCVESEREALLSFKQDL-EDPSNRLATW----IGDGDCCKWAGVICDN--------FTGHVLELHLGNPWEDDHGHQAK 95 (960)
Q Consensus 29 ~~~~~~~~~~ll~~k~~~-~~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~ 95 (960)
..+..+|++||++||+++ .|+.+.+.+| ....++|.|.|+.|.. ...+|+.|+|+++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n---------- 91 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV---------- 91 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence 346678999999999988 4776667889 3457899999999952 3468888888875
Q ss_pred cccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCC
Q 035852 96 ESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGG 175 (960)
Q Consensus 96 ~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~ 175 (960)
.+. .+|+.++++++|++|+|++|.++ .+|..++.+++|++|+|++|++. .+|..++++++|++|++++|.+..
T Consensus 92 ---~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~ 164 (328)
T 4fcg_A 92 ---PLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELT 164 (328)
T ss_dssp ---CCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCC
T ss_pred ---Cch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcc
Confidence 444 78888888999999999999888 38888888999999999999887 778888899999999998876544
Q ss_pred CccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChh
Q 035852 176 LYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLI 255 (960)
Q Consensus 176 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 255 (960)
..+..+.. . .....+..+++|++|++++|+++ ..|..+.++++|++|++++|.++ + +
T Consensus 165 ~~p~~~~~---------~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~-l 221 (328)
T 4fcg_A 165 ELPEPLAS---------T-----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-A-L 221 (328)
T ss_dssp CCCSCSEE---------E-----------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-C-C
T ss_pred ccChhHhh---------c-----------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-c-C
Confidence 33332221 0 01122345666777777777666 34445777777777777777775 2 4
Q ss_pred HHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcC
Q 035852 256 ATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENL 335 (960)
Q Consensus 256 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l 335 (960)
|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+| ..++++
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L 300 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQL 300 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGS
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhc
Confidence 5567777777777777777777777777777777777777777777777777777777777777777777777 667777
Q ss_pred CCCCEEeCCCCCC
Q 035852 336 SSIQSLDLSFNEL 348 (960)
Q Consensus 336 ~~L~~L~Ls~n~l 348 (960)
++|+.+++..+.+
T Consensus 301 ~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 301 PANCIILVPPHLQ 313 (328)
T ss_dssp CTTCEEECCGGGS
T ss_pred cCceEEeCCHHHH
Confidence 7777777776544
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.2e-29 Score=277.13 Aligned_cols=303 Identities=24% Similarity=0.366 Sum_probs=253.0
Q ss_pred CceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCch
Q 035852 75 GHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIP 154 (960)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 154 (960)
.+++.++++++ .+ ..++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.+.
T Consensus 44 ~~L~~L~l~~~-------------~i-~~~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~-- 103 (347)
T 4fmz_A 44 ESITKLVVAGE-------------KV-ASIQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI-- 103 (347)
T ss_dssp TTCSEEECCSS-------------CC-CCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--
T ss_pred ccccEEEEeCC-------------cc-ccch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--
Confidence 46788888875 22 2343 48889999999999999986 455 89999999999999998863
Q ss_pred hhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCc
Q 035852 155 NQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSV 234 (960)
Q Consensus 155 ~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 234 (960)
+.++++++|++|++++|.+..++. +..+++|++|++++|..... ...+..+++|++|++++|.+.+..+ +
T Consensus 104 ~~~~~l~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~ 173 (347)
T 4fmz_A 104 SALQNLTNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKDVTP--I 173 (347)
T ss_dssp GGGTTCTTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCC---CGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred hHHcCCCcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCccc---ccchhhCCCCcEEEecCCCcCCchh--h
Confidence 369999999999999999876543 77899999999999965443 3348899999999999999998776 8
Q ss_pred cCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCC
Q 035852 235 ANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLE 314 (960)
Q Consensus 235 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 314 (960)
..+++|++|++++|.+. +. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIE-DI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp GGCTTCSEEECTTSCCC-CC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccCCCCCEEEccCCccc-cc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 89999999999999997 33 33 8899999999999999986544 8899999999999999998654 89999999
Q ss_pred EEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccE
Q 035852 315 YLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLES 394 (960)
Q Consensus 315 ~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 394 (960)
+|++++|.+++ + ..+..+++|++|++++|.+++. ..+..+++| +.
T Consensus 247 ~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L------------------------------~~ 291 (347)
T 4fmz_A 247 WLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL------------------------------NS 291 (347)
T ss_dssp EEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC------------------------------SE
T ss_pred EEECCCCccCC-C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC------------------------------CE
Confidence 99999999984 4 3588999999999999999854 357777777 66
Q ss_pred EEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852 395 LDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451 (960)
Q Consensus 395 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 451 (960)
|++++|.+++..+..++.+++|++|++++|.+++..| +..+++|++|++++|.++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 6666777776777888889999999999999987655 788999999999999875
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.6e-33 Score=324.19 Aligned_cols=381 Identities=20% Similarity=0.148 Sum_probs=236.6
Q ss_pred CCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEe
Q 035852 438 SSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLD 517 (960)
Q Consensus 438 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 517 (960)
++|++|++++|+++.......+..+++|++|++++|.++.... ..++..+..+++|++|+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L~ 62 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAELN 62 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEEE
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEEe
Confidence 4567788887777644433335666666666666665442210 02344566667788888
Q ss_pred ccCCCCcCCCchhHhhcCC----cccEEEccCccccc----cCC-CccccCCCCeEEcccCcCcCCCCC--------CCc
Q 035852 518 ISDSGIVDTIPNRFWKSIT----QFNYLSLSNNQIHG----EIP-NLTEVSQLGTLDLSANNLSGQLPL--------LAS 580 (960)
Q Consensus 518 Ls~n~~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~-~l~~l~~L~~L~Ls~n~l~~~~p~--------~~~ 580 (960)
+++|.+.+..+..+...++ +|++|++++|.++. .++ .+..+++|++|++++|.+++..+. ..+
T Consensus 63 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 142 (461)
T 1z7x_W 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC 142 (461)
T ss_dssp CTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred CCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence 8887776655555555565 68888888888774 233 466777888888888877643221 123
Q ss_pred cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCccc-----CCCcccEEECCCCccccC----CCcC
Q 035852 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWM-----NWRYLLVLRLDNNKFTGK----LPTS 651 (960)
Q Consensus 581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~ 651 (960)
+|++|++++|++++.....+...+..++.|+.|++++|.+++..+..+. ..++|++|++++|.+++. ++..
T Consensus 143 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 143 RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred cceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 5777777777777655444445555567777777777776654333332 245777777777777653 4555
Q ss_pred cCCCCCCcEEECCCCeecccC-----CcCCcCCCCCcEEecCCCccccc----CchHHhhcCcccceeeeccccccccCc
Q 035852 652 LGALSLLRSLHLRNNNLSGTL-----PVSLGNCTELETIDIGENEFSGN----VPAWIGERFPRMIILILRSNKFHGVFP 722 (960)
Q Consensus 652 l~~l~~L~~L~L~~N~l~~~~-----p~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~l~~L~~L~L~~N~l~~~~p 722 (960)
+..+++|++|++++|++++.. +..+..+++|++|++++|++++. ++..+. .+++|++|++++|++.+..+
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHH
Confidence 666777777777777776432 22233567777777777777643 455554 57777777777777765443
Q ss_pred hhhcC-----CCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEeccc
Q 035852 723 LELCH-----LAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK 797 (960)
Q Consensus 723 ~~l~~-----l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (960)
..+.. .++|+.|++++|.+++.....+.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------------------------------- 334 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFS----------------------------------------------- 334 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH-----------------------------------------------
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHH-----------------------------------------------
Confidence 33322 25777777777776543111110
Q ss_pred chhhhhhhccccEEEccCCcccccCchhhhh-----hcccceeecCcccCcc----cCchhhccCCCCCEEECcCCcccc
Q 035852 798 TLTFKAVLRLLTNIDLSNNKFSGEIPAEITV-----LRELRSLNLSHNFFSG----RIPENIGAMALLESLDFSSNRLEG 868 (960)
Q Consensus 798 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l~g 868 (960)
.....++.|+.|||++|++++..+..+.. .+.|+.|+|++|.+++ .+|..+..+++|+.||+++|++++
T Consensus 335 --~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 --SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp --HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred --HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 00112344577778877777666655554 5577778888887776 677777777778888888887775
Q ss_pred c--------CCCCCCCCCCCCEEEcccCcce
Q 035852 869 E--------IPKNTVNLVFLSHFNISYNNLS 891 (960)
Q Consensus 869 ~--------iP~~l~~l~~L~~l~ls~N~l~ 891 (960)
. +|... ..|+.|++..+...
T Consensus 413 ~~~~~l~~~l~~~~---~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 413 AGILQLVESVRQPG---CLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHTSTT---CCCCEEECTTCCCC
T ss_pred HHHHHHHHHhccCC---cchhheeecccccC
Confidence 4 44432 34555555555444
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=8.8e-29 Score=272.44 Aligned_cols=224 Identities=20% Similarity=0.223 Sum_probs=145.1
Q ss_pred cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeec--ccCCcCCcCCCC
Q 035852 604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLS--GTLPVSLGNCTE 681 (960)
Q Consensus 604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~ 681 (960)
+.++++|+.|++++|+++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++|.++ +..|..+..+ +
T Consensus 98 ~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K 173 (332)
T ss_dssp STTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred hhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence 344566666666666666 3444433 56777777777776555555677777777777777774 3556666666 7
Q ss_pred CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
|++|++++|+++ .+|..+ .++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..++.
T Consensus 174 L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------- 242 (332)
T 2ft3_A 174 LNYLRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT------- 242 (332)
T ss_dssp CSCCBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-------
T ss_pred cCEEECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-------
Confidence 777777777776 366543 256777777777777666666777777777777777776655544443333
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 841 (960)
|+.|+|++|+++ .+|..++.+++|+.|+|++|+
T Consensus 243 ----------------------------------------------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 243 ----------------------------------------------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp ----------------------------------------------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred ----------------------------------------------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 367777777777 677777777777777777777
Q ss_pred CcccCchhhcc------CCCCCEEECcCCccc--ccCCCCCCCCCCCCEEEcccCc
Q 035852 842 FSGRIPENIGA------MALLESLDFSSNRLE--GEIPKNTVNLVFLSHFNISYNN 889 (960)
Q Consensus 842 l~g~iP~~l~~------l~~L~~L~Ls~N~l~--g~iP~~l~~l~~L~~l~ls~N~ 889 (960)
+++..+..+.. ...|+.|++++|.+. +..|..+..++.|+.+++++|+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 77655555544 255777777777776 4556666777777777777663
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.1e-32 Score=313.38 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=67.7
Q ss_pred cccEEecccccccCC----CCCcccCCCcccEEECCCCccccCCCcCcCC-----CCCCcEEECCCCeecc----cCCcC
Q 035852 609 LTQIINLEDNLLAGE----IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGA-----LSLLRSLHLRNNNLSG----TLPVS 675 (960)
Q Consensus 609 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~ 675 (960)
.|+.|++++|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 444555555544433 3444555667777777777766543333322 5677777777777775 56777
Q ss_pred CcCCCCCcEEecCCCcccccCchHHhh----cCcccceeeeccccccccCch
Q 035852 676 LGNCTELETIDIGENEFSGNVPAWIGE----RFPRMIILILRSNKFHGVFPL 723 (960)
Q Consensus 676 l~~l~~L~~L~Ls~N~l~g~ip~~~~~----~l~~L~~L~L~~N~l~~~~p~ 723 (960)
+..+++|++|++++|++++.-...+.+ ...+|+.|.+.++.+....+.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 777777777777777776432222221 233577777777666544443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.2e-28 Score=269.32 Aligned_cols=295 Identities=20% Similarity=0.300 Sum_probs=228.4
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccce
Q 035852 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLEN 192 (960)
Q Consensus 113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~ 192 (960)
++++++++++.++. +|..+. ++|++|++++|.+.+..|..++++++|++|++++|.++.+.+. .+.++++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK---AFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG---GSTTCTTCCE
T ss_pred cCCEEECCCCCccc--cCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh---HhhCcCCCCE
Confidence 68999999998874 677664 7899999999998887788899999999999999988765332 4678889999
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC-ChhHHhhcCCCCCCEEecc
Q 035852 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-SLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~Ls 271 (960)
|++++|.++.++.. +. ++|++|++++|++++.++..+.++++|++|++++|.++. +..+..+..+ +|++|+++
T Consensus 107 L~L~~n~l~~l~~~---~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 107 LYISKNHLVEIPPN---LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp EECCSSCCCSCCSS---CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred EECCCCcCCccCcc---cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 99999988866432 22 789999999999999988889999999999999999852 2456677777 99999999
Q ss_pred CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852 272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK 351 (960)
Q Consensus 272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 351 (960)
+|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .
T Consensus 181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCC-B
T ss_pred CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCe-e
Confidence 999985 666554 789999999999999888889999999999999999985444 67889999999999999998 7
Q ss_pred cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC--CC
Q 035852 352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS--GQ 429 (960)
Q Consensus 352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~--~~ 429 (960)
+|..+..+++|++|++++|+++..+...+....... ....|+.|++++|.+. +.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~------------------------~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV------------------------KRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCS------------------------SSCCBSEEECCSSSSCGGGS
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHcccccccc------------------------ccccccceEeecCccccccc
Confidence 888899999998877777777655443322211111 1345666666666655 44
Q ss_pred CcccccCCCCCcEEecCCcc
Q 035852 430 VPWSLGKLSSLRYLDISNNQ 449 (960)
Q Consensus 430 ~p~~l~~l~~L~~L~L~~n~ 449 (960)
.|..+..+++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 55566666677777766653
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1e-27 Score=263.71 Aligned_cols=296 Identities=20% Similarity=0.246 Sum_probs=226.4
Q ss_pred CCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccce
Q 035852 113 HLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLEN 192 (960)
Q Consensus 113 ~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~ 192 (960)
++++++++++.++. +|..+. ++|++|++++|++++..+..++++++|++|++++|.++.+.+. .+..+++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG---AFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT---TTTTCTTCCE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH---HhcCCCCCCE
Confidence 78899999988874 676554 6899999999998887777899999999999999988766443 3567888999
Q ss_pred eecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCC-ChhHHhhcCCCCCCEEecc
Q 035852 193 LDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDN-SLIATQLYGLCNLVFLDLS 271 (960)
Q Consensus 193 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~Ls 271 (960)
|++++|.++.++.. + .++|++|++++|.+++.++..+.++++|++|++++|.+.. +..+..+..+++|++|+++
T Consensus 105 L~Ls~n~l~~l~~~---~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 105 LYLSKNQLKELPEK---M--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCSBCCSS---C--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcCCccChh---h--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 99999988865432 2 2789999999999998888888999999999999998852 2556778889999999999
Q ss_pred CcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcc
Q 035852 272 DNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWK 351 (960)
Q Consensus 272 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~ 351 (960)
+|.++ .+|..+. ++|++|++++|.+++..|..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .
T Consensus 180 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 180 DTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp SSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCS-S
T ss_pred CCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCcCc-c
Confidence 99988 4565544 789999999999998888889999999999999999985444 67888999999999999988 7
Q ss_pred cccccccCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCC--C
Q 035852 352 IPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISG--Q 429 (960)
Q Consensus 352 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~ 429 (960)
+|..+..+++|++|++++|+++..+...+..... ....+.++.+++++|.+.. .
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~------------------------~~~~~~l~~l~l~~N~~~~~~i 310 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY------------------------NTKKASYSGVSLFSNPVQYWEI 310 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC------------------------CTTSCCCSEEECCSSSSCGGGS
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCccc------------------------ccccccccceEeecCccccccc
Confidence 7888888888877777777776544332221110 0123566677777776642 4
Q ss_pred CcccccCCCCCcEEecCCcc
Q 035852 430 VPWSLGKLSSLRYLDISNNQ 449 (960)
Q Consensus 430 ~p~~l~~l~~L~~L~L~~n~ 449 (960)
.|..+..+++++.+++++|+
T Consensus 311 ~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 311 QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGGTTCCCGGGEEC----
T ss_pred CccccccccceeEEEecccC
Confidence 45566677777777777764
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.3e-31 Score=313.89 Aligned_cols=413 Identities=14% Similarity=0.076 Sum_probs=268.9
Q ss_pred cCccccCCCCCCEEeCCCCCCC---CCCCccccC------------CCCCCCEEeCCCCcccCCchhhhcCC--CCCcEE
Q 035852 104 INPALLDFEHLIYLNLSYNDFK---GIQIPRFLG------------SMGNLRFLDLSGAGFVGMIPNQIGNL--SNLQYL 166 (960)
Q Consensus 104 i~~~l~~l~~L~~L~Ls~n~~~---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L 166 (960)
.+..+.++++|++|+++++... + .+|..++ .+++|++|+|++|.+++..+..++.. .+|++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFN-LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGT-CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcc-cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3455678899999999876321 1 1232222 78999999999999888777777764 449999
Q ss_pred eCCCCCCCCCccCCcc-cccCCCccceeecCCCCCCCCCC--CcccccCCCCCCEEEccCCcCCCCCC----CCccCCCC
Q 035852 167 NLRPNYLGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVSN--GPLVTNALRSLLVLQLAGCQLSHFPP----LSVANFSS 239 (960)
Q Consensus 167 ~L~~n~i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~ 239 (960)
++++|.- .....+. ....+++|++|++++|.+++... .+.....+++|++|++++|.+++... ..+.++++
T Consensus 144 ~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 144 KLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred ECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 9998851 1222222 23478899999999998765421 23345678899999999998874433 33457788
Q ss_pred CcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccC---CCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEE
Q 035852 240 LVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQ---GPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYL 316 (960)
Q Consensus 240 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 316 (960)
|++|++++|.+. .++..+..+++|++|+++.+... +..+..+..+++|+.|+++++. ...+|..+..+++|++|
T Consensus 222 L~~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 222 LVSVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL 298 (592)
T ss_dssp CCEEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred CcEEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence 999999988875 36788888899999988864333 3345567788888888888753 34467777788888889
Q ss_pred eeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCC-----------cccCCcchhhHHHhhc
Q 035852 317 SLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSG-----------IQLSHQKVSQVLAIFS 385 (960)
Q Consensus 317 ~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~~~~~ 385 (960)
++++|.+++......+..+++|++|+++++-..+.++.....+++|++|++++ +.++......+...
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~-- 376 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG-- 376 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH--
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh--
Confidence 98888876544434467888888888884322333344446678888888883 45554444333222
Q ss_pred cCCCCcccEEEcCCCCCCCchhhhhcC-CCCCCEEecC----CCcCCCC-----CcccccCCCCCcEEecCCcc--cccc
Q 035852 386 GCVSDVLESLDLSNTTLSGSLTNQIGK-FKVLNSVDLS----ENSISGQ-----VPWSLGKLSSLRYLDISNNQ--LNGT 453 (960)
Q Consensus 386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~L~~n~--l~~~ 453 (960)
.++|++|+++.+.+++..+..++. +++|+.|+++ .|.+++. ++..+..+++|++|+++.|. +++.
T Consensus 377 ---~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 377 ---CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp ---CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred ---CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 245778888777777766666655 7778888875 5556542 33335567777777776543 4444
Q ss_pred cchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhh
Q 035852 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWK 533 (960)
Q Consensus 454 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~ 533 (960)
........+++|+.|++++|+++... ++..+..+++|++|++++|.+.+.....+..
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~-----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEG-----------------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHH-----------------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred HHHHHHHhCccceEeeccCCCCCHHH-----------------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence 33323334666666666666554321 2233345556666666666654443444445
Q ss_pred cCCcccEEEccCccccc
Q 035852 534 SITQFNYLSLSNNQIHG 550 (960)
Q Consensus 534 ~l~~L~~L~Ls~n~l~~ 550 (960)
.+++|++|++++|+++.
T Consensus 511 ~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 511 KLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HCSSCCEEEEESCBCCT
T ss_pred hcCccCeeECcCCcCCH
Confidence 56666666666666554
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.1e-29 Score=270.85 Aligned_cols=227 Identities=19% Similarity=0.224 Sum_probs=196.5
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|++|+++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 367788888888887 67888888999999999999998 88888999999999999999998 7888899999999999
Q ss_pred cCCCcccccCchHHh--------hcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852 687 IGENEFSGNVPAWIG--------ERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF 758 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~--------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~ 758 (960)
+++|++.+.+|..+. ..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|..++.++.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~---- 230 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK---- 230 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT----
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC----
Confidence 999888888887764 13889999999999998 788889999999999999999884 5555554444
Q ss_pred cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecC
Q 035852 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLS 838 (960)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls 838 (960)
|+.|+|++|++.+.+|..++.+++|+.|+|+
T Consensus 231 -------------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 231 -------------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp -------------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred -------------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 4889999999999999999999999999999
Q ss_pred cccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce
Q 035852 839 HNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891 (960)
Q Consensus 839 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~ 891 (960)
+|++.+.+|..++++++|+.|||++|++.|.+|+.+++++.|+.++++.|.+.
T Consensus 262 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999998876543
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6.5e-27 Score=257.36 Aligned_cols=276 Identities=18% Similarity=0.262 Sum_probs=165.6
Q ss_pred CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 293 (960)
+.+++|++++|++++.++..|.++++|++|++++|.++ +..|..+..+++|++|++++|+++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 45666666666666666666666666666666666665 445666666666666666666665 3444333 5666666
Q ss_pred CCCCcCCCcchhhhcCCCCCCEEeeeCccccc--cccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcc
Q 035852 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQG--RISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQ 371 (960)
Q Consensus 294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 371 (960)
+++|.+++..+..+.++++|++|++++|.+.. ..+ ..+..+++|++|++++|.++ .+|..+. +
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~----------- 192 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNIT-TIPQGLP--P----------- 192 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCC-SCCSSCC--T-----------
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccc-cCCcccc--c-----------
Confidence 66666666655566666666666666666542 222 44555666666666666555 2333221 2
Q ss_pred cCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccc
Q 035852 372 LSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLN 451 (960)
Q Consensus 372 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 451 (960)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 193 -------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 193 -------------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp -------------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred -------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 3466777777776666677777778888888888777766667777778888888888776
Q ss_pred cccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcC-CCchh
Q 035852 452 GTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVD-TIPNR 530 (960)
Q Consensus 452 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~-~~~~~ 530 (960)
.+|. .+..+++|++|++++|+++......|.... .......++.+++++|++.. .++..
T Consensus 254 -~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 254 -KVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp -SCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred -cCCh-hhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCcc
Confidence 5554 466777777777777777665555443210 00112344555555555432 23334
Q ss_pred HhhcCCcccEEEccCcc
Q 035852 531 FWKSITQFNYLSLSNNQ 547 (960)
Q Consensus 531 ~~~~l~~L~~L~Ls~n~ 547 (960)
.+..+++++.+++++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 45556666666666653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=266.24 Aligned_cols=280 Identities=17% Similarity=0.166 Sum_probs=219.5
Q ss_pred ccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccE
Q 035852 557 EVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV 636 (960)
Q Consensus 557 ~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 636 (960)
.++.....+++++.++......+++|++|++++|++++..+ ..+.++++|+.|++++|++++..|..+.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN----SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCH----HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34444556677777765544456677888888887765322 24566889999999999999888888999999999
Q ss_pred EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCc--CCcCCCCCcEEecCCCc-ccccCchHHhhcCcccceeeec
Q 035852 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPV--SLGNCTELETIDIGENE-FSGNVPAWIGERFPRMIILILR 713 (960)
Q Consensus 637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~l~~L~~L~L~ 713 (960)
|++++|++++..+..++.+++|++|++++|++++ +|. .+.++++|++|++++|. +.+..|..+. .+++|++|+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~ 182 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEID 182 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECC
Confidence 9999999986544458889999999999999984 554 78889999999999984 5544445554 78999999999
Q ss_pred cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852 714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT 793 (960)
Q Consensus 714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (960)
+|++++..|..+..+++|+.|++++|++. .+|..+
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~-------------------------------------------- 217 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF-------------------------------------------- 217 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHH--------------------------------------------
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccc-cchhhh--------------------------------------------
Confidence 99999888999999999999999999874 333221
Q ss_pred ecccchhhhhhhccccEEEccCCcccccCchhhh---hhcccceeecCcccCcc----cCchhhccCCCCCEEECcCCcc
Q 035852 794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEIT---VLRELRSLNLSHNFFSG----RIPENIGAMALLESLDFSSNRL 866 (960)
Q Consensus 794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~iP~~l~~l~~L~~L~Ls~N~l 866 (960)
...+++|+.|++++|++++..+..+. ....++.++|++|.+++ .+|+.++.+++|+.|||++|++
T Consensus 218 --------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 218 --------VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp --------HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred --------hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 12245569999999999987666554 35668888888888887 5899999999999999999999
Q ss_pred cccCCCC-CCCCCCCCEEEcccCcceecCCC
Q 035852 867 EGEIPKN-TVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 867 ~g~iP~~-l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
+ .+|.. ++++++|++|++++|++.|..|.
T Consensus 290 ~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 290 K-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred C-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 9 67777 48999999999999999998774
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.4e-27 Score=255.79 Aligned_cols=234 Identities=21% Similarity=0.224 Sum_probs=188.0
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCcccc--CCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTG--KLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (960)
+.++.|++++|+++...+..+.++++|++|++++|+++. ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 345566666666664444456778888888888888763 23556667788888888888887 466778888888888
Q ss_pred ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcc-ccCccccccccchhccCCCCc
Q 035852 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG-TIPTCISNFTAMATFLGSDSI 764 (960)
Q Consensus 686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~~~~~~~~ 764 (960)
++++|++++..+...+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++ .+|..+..++.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---------- 176 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------- 176 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT----------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC----------
Confidence 8888888854432233378888899999998888888888889999999999999886 46666555444
Q ss_pred ccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcc
Q 035852 765 YTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSG 844 (960)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 844 (960)
|+.|+|++|++++..|..++.+++|+.|+|++|++++
T Consensus 177 -------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 177 -------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp -------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred -------------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 4899999999998889999999999999999999998
Q ss_pred cCchhhccCCCCCEEECcCCcccccCCCCCCCC-CCCCEEEcccCcceecCC
Q 035852 845 RIPENIGAMALLESLDFSSNRLEGEIPKNTVNL-VFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 845 ~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~l~ls~N~l~g~iP 895 (960)
..+..++.+++|+.|||++|++++.+|..+..+ +.|++|++++|++++..+
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 888789999999999999999999999999998 599999999999987543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-27 Score=261.93 Aligned_cols=283 Identities=20% Similarity=0.285 Sum_probs=173.9
Q ss_pred CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 035852 60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNL 139 (960)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L 139 (960)
..+|.|.|+ |+-...+ ..++|..+. ++|++|++++|.+++. .+..++.+++|
T Consensus 27 ~~~C~~~~~-c~~~~~~------------------------l~~iP~~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L 78 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGS------------------------LNSIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNL 78 (353)
T ss_dssp CCEECTTSE-EECCSTT------------------------CSSCCTTCC--TTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred CCCCCCCeE-eeCCCCC------------------------ccccccccc--ccCcEEECCCCcCccc-CHHHhccCCCC
Confidence 567999988 7542222 234555443 4788888888888763 34477888888
Q ss_pred CEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEE
Q 035852 140 RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219 (960)
Q Consensus 140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 219 (960)
++|++++|++.+..|..++++++|++|++++|.++.++. ..+..+++|++|
T Consensus 79 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------------~~~~~l~~L~~L 129 (353)
T 2z80_A 79 QALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-----------------------------SWFKPLSSLTFL 129 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-----------------------------HHHTTCTTCSEE
T ss_pred CEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-----------------------------hHhCCCccCCEE
Confidence 888888888887777778888888888887776553221 123344444444
Q ss_pred EccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCc
Q 035852 220 QLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNH 298 (960)
Q Consensus 220 ~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 298 (960)
++++|++++.++ ..+.++++|++|++++|. .+.+..+..++++++|++|++++|.
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------------------~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------------------TFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------------------SCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCc------------------------cccccCHHHccCCCCCCEEECCCCC
Confidence 444444444433 344445555555555442 2333334445555555555555555
Q ss_pred CCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccc---cCCCCCEEEcCCcccCCc
Q 035852 299 FSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS---RFCNLRSISLSGIQLSHQ 375 (960)
Q Consensus 299 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~ 375 (960)
+++..|..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+. ....+
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l------------- 251 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI------------- 251 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC-------------
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchh-------------
Confidence 55555555666666666666666654 44434445566666666666666544333222 22334
Q ss_pred chhhHHHhhccCCCCcccEEEcCCCCCCC----chhhhhcCCCCCCEEecCCCcCCCCCccc-ccCCCCCcEEecCCccc
Q 035852 376 KVSQVLAIFSGCVSDVLESLDLSNTTLSG----SLTNQIGKFKVLNSVDLSENSISGQVPWS-LGKLSSLRYLDISNNQL 450 (960)
Q Consensus 376 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 450 (960)
+.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++
T Consensus 252 -----------------~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 252 -----------------KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -----------------CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----------------hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCc
Confidence 444444444443 46777888999999999999998 55555 58889999999999988
Q ss_pred ccccc
Q 035852 451 NGTVS 455 (960)
Q Consensus 451 ~~~i~ 455 (960)
.+..+
T Consensus 314 ~~~~~ 318 (353)
T 2z80_A 314 DCSCP 318 (353)
T ss_dssp CCCHH
T ss_pred cCcCC
Confidence 86654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.5e-28 Score=290.61 Aligned_cols=398 Identities=12% Similarity=0.040 Sum_probs=185.5
Q ss_pred CCCCCCEEeCCCCcCCCcchhhhcCC-C-CCCEEeeeCccc-cccccHHHHhcCCCCCEEeCCCCCCCcc----cccccc
Q 035852 285 NWTSLRHLDLSSNHFSYLIPEWLNKF-S-RLEYLSLSSNRL-QGRISSVLLENLSSIQSLDLSFNELEWK----IPRSFS 357 (960)
Q Consensus 285 ~l~~L~~L~Ls~n~l~~~~p~~l~~l-~-~L~~L~L~~n~l-~~~i~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~ 357 (960)
.+++|++|+|++|.+++..+..+... + +|++|++++|.. ...........+++|++|+|++|.+++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56666666666666665555555442 2 366666666651 1110112234566666666666665433 222334
Q ss_pred cCCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCC
Q 035852 358 RFCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKL 437 (960)
Q Consensus 358 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 437 (960)
.+++|++|++++|.++..... .++..+.++++|++|++++|.+.+ +|..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~--------------------------~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPK--------------------------DLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHH--------------------------HHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred cCCCccEEEeeccCCCccCHH--------------------------HHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 455555555555544422222 233334445555555555555543 44455555
Q ss_pred CCCcEEecCCccccccc--chhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcE
Q 035852 438 SSLRYLDISNNQLNGTV--SEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVN 515 (960)
Q Consensus 438 ~~L~~L~L~~n~l~~~i--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 515 (960)
++|++|+++........ ....+..+++|+.++++++ ....+|..+..+++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------------~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-------------------------GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-------------------------CTTTGGGGGGGGGGCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCcccc-------------------------chhHHHHHHhhcCCCcE
Confidence 55555555432211000 0001222333333333221 11223334444555555
Q ss_pred EeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCC-ccccCCCCeEEccc-----------CcCcCC-CC---CCC
Q 035852 516 LDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPN-LTEVSQLGTLDLSA-----------NNLSGQ-LP---LLA 579 (960)
Q Consensus 516 L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~-----------n~l~~~-~p---~~~ 579 (960)
|++++|.+.+.....+...+++|++|+++++...+.++. ...+++|++|++++ +.+++. ++ ..+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 555555543333333344555566665553222222222 23445555555552 233321 11 113
Q ss_pred ccCcEEEcccccccccccchhhcccCCCCcccEEecc----cccccCC-----CCCcccCCCcccEEECCCCc--cccCC
Q 035852 580 SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLE----DNLLAGE-----IPDCWMNWRYLLVLRLDNNK--FTGKL 648 (960)
Q Consensus 580 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~~~~ 648 (960)
++|++|+++.|++++..+..+.. .+++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 45555555555554433222211 24556666664 4445442 22224456666666665433 44333
Q ss_pred CcCcC-CCCCCcEEECCCCeecc-cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhh-
Q 035852 649 PTSLG-ALSLLRSLHLRNNNLSG-TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLEL- 725 (960)
Q Consensus 649 p~~l~-~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l- 725 (960)
+..++ .+++|++|++++|++++ .++..+..+++|++|++++|++++.....+...+++|++|++++|++++.--..+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGG
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHH
Confidence 33332 25666666666666654 2344445566666777766666544333333356666666666666654322222
Q ss_pred cCCCCCCeEeec
Q 035852 726 CHLAFLKILVLA 737 (960)
Q Consensus 726 ~~l~~L~~L~Ls 737 (960)
..++.+....+.
T Consensus 535 ~~~p~l~~~~~~ 546 (592)
T 3ogk_B 535 MARPYWNIELIP 546 (592)
T ss_dssp GCCTTEEEEEEC
T ss_pred HhCCCcEEEEec
Confidence 234544444443
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=9.4e-27 Score=253.17 Aligned_cols=229 Identities=24% Similarity=0.313 Sum_probs=171.5
Q ss_pred CCCCEEeCCCCCCCCCCCcc-ccCCCCCCCEEeCCCCcccCC--chhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCC
Q 035852 112 EHLIYLNLSYNDFKGIQIPR-FLGSMGNLRFLDLSGAGFVGM--IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLS 188 (960)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~ 188 (960)
++|++|++++|.++. +|. .++.+++|++|+|++|++... .|..+..+++|++|++++|.+..+
T Consensus 28 ~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l------------ 93 (306)
T 2z66_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM------------ 93 (306)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE------------
T ss_pred CCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccC------------
Confidence 689999999999985 454 578999999999999988733 467777888999999988876533
Q ss_pred ccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCC-CCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852 189 LLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPP-LSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF 267 (960)
Q Consensus 189 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 267 (960)
+..+..+++|++|++++|++++..+ ..+.++++|++|++++|.+. +..+..+..+++|++
T Consensus 94 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 94 ------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEV 154 (306)
T ss_dssp ------------------EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCE
T ss_pred ------------------hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCE
Confidence 2234445555556666665555554 45677777777777777776 556666777788888
Q ss_pred EeccCcccCC-CCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCC
Q 035852 268 LDLSDNNFQG-PIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFN 346 (960)
Q Consensus 268 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n 346 (960)
|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTS
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCC
Confidence 8888887775 467778888888888888888888777788888888888888888874333 56778888888888888
Q ss_pred CCCcccccccccCC-CCCEEEcCCcccCC
Q 035852 347 ELEWKIPRSFSRFC-NLRSISLSGIQLSH 374 (960)
Q Consensus 347 ~l~~~~p~~l~~l~-~L~~L~L~~n~l~~ 374 (960)
.+.+..|..+..++ +|++|++++|.++.
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 88887787777774 77777777766653
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.9e-28 Score=263.61 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=81.8
Q ss_pred cccCCCCeEEcccCcCcCCCCC-CCccCcEEEccccccc-ccccchhh---cccCCCCcccEEecccccccCCCCCcc--
Q 035852 556 TEVSQLGTLDLSANNLSGQLPL-LASNVMVLDLSKNKLS-GSILHFVC---HETNGTRLTQIINLEDNLLAGEIPDCW-- 628 (960)
Q Consensus 556 ~~l~~L~~L~Ls~n~l~~~~p~-~~~~L~~L~ls~n~l~-~~~~~~~~---~~~~~~~~L~~L~Ls~n~l~~~~p~~l-- 628 (960)
+...+|+.+++++|.+ .+|. ....++.|++++|++. +.+|.... ....+++.|+.|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3445677888888887 4454 3445777777777773 33332221 011135566666666666666666654
Q ss_pred cCCCcccEEECCCCccccCCCcCcCCC-----CCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccccc
Q 035852 629 MNWRYLLVLRLDNNKFTGKLPTSLGAL-----SLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGN 695 (960)
Q Consensus 629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 695 (960)
..+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..|+.+++|++|++++|++.+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 5666666666666666654 5555554 6666666666666655556666666666666666665543
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=258.19 Aligned_cols=229 Identities=21% Similarity=0.221 Sum_probs=173.7
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (960)
+.++.|++++|++++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34556666666666666777777788888888888887777777777888888888888887666666777888888888
Q ss_pred CCCcccccCchHHhhcCcccceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
++|+++ .+|...+..+++|+.|++++|+..+.+ +..+..+++|+.|++++|++++ +|. +..
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~--------------- 216 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LTP--------------- 216 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CTT---------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-ccc---------------
Confidence 888877 444444446788888888874433333 3467788888888888888864 232 222
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI 846 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 846 (960)
+++|+.|+|++|++++..|..+.++++|+.|+|++|++++..
T Consensus 217 --------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 217 --------------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp --------------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred --------------------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence 234588899999998888888888999999999999998888
Q ss_pred chhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852 847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++..
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 8888889999999999999987777778888889999999887643
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2e-26 Score=247.69 Aligned_cols=228 Identities=20% Similarity=0.159 Sum_probs=154.3
Q ss_pred cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCC
Q 035852 611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGEN 690 (960)
Q Consensus 611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 690 (960)
..++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34566666655 344333 356777777777777666666777777777777777777666777777777777777777
Q ss_pred c-ccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccC
Q 035852 691 E-FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQY 769 (960)
Q Consensus 691 ~-l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~ 769 (960)
+ +.+..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++++..+..++.++.
T Consensus 91 ~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------- 154 (285)
T 1ozn_A 91 AQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN--------------- 154 (285)
T ss_dssp TTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred CCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC---------------
Confidence 6 5533344444 5777777777777777666667777777777777777776544444443333
Q ss_pred CCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchh
Q 035852 770 PSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPEN 849 (960)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~ 849 (960)
|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..
T Consensus 155 --------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 155 --------------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp --------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred --------------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 367777777777555556777777777777777777777777
Q ss_pred hccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852 850 IGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 850 l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP 895 (960)
++++++|+.||+++|++++..|..+.+++.|++|++++|++.+..+
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 7777777777777777776555567777777777777777766544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.9e-26 Score=247.88 Aligned_cols=235 Identities=20% Similarity=0.248 Sum_probs=165.9
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-ecccCCcCCcCCCCCcEEe
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-LSGTLPVSLGNCTELETID 686 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~ 686 (960)
+.++.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+ +.+..|..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555555667777777777777777776667777777777777777776 6655566777777777777
Q ss_pred cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
+++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..++.
T Consensus 112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------ 178 (285)
T 1ozn_A 112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS------------ 178 (285)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT------------
T ss_pred CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc------------
Confidence 777777755555544 6777777777777777666666777888888888888877544444444333
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI 846 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 846 (960)
|+.|+|++|++++..|..++++++|+.|+|++|++++..
T Consensus 179 -----------------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 179 -----------------------------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp -----------------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred -----------------------------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 478888888888888888888888888888888888766
Q ss_pred chhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
|+.++.+++|+.|+|++|++++..+.. .-...++.+..+.+.+.+..|..
T Consensus 218 ~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred HHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 677888888888888888887655431 11123444556777787777764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.8e-27 Score=259.09 Aligned_cols=247 Identities=23% Similarity=0.256 Sum_probs=198.9
Q ss_pred CccCcEEEcccccccccccchhhcccCCCCcccEEecccccc-cCCCCCccc-------CCCcccEEECCCCccccCCCc
Q 035852 579 ASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLL-AGEIPDCWM-------NWRYLLVLRLDNNKFTGKLPT 650 (960)
Q Consensus 579 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~ 650 (960)
..+|+.+++++|.+ .+|..+.. .++.|++++|++ .+.+|..+. ++++|++|++++|++++.+|.
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTD------IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHH------HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred CCCceeEeeccccc--ccHHHHHH------HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 35788899999998 56654433 278889999998 456676665 788999999999999988888
Q ss_pred Cc--CCCCCCcEEECCCCeecccCCcCCcCC-----CCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc--C
Q 035852 651 SL--GALSLLRSLHLRNNNLSGTLPVSLGNC-----TELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV--F 721 (960)
Q Consensus 651 ~l--~~l~~L~~L~L~~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~--~ 721 (960)
.+ +.+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..+. .+++|++|++++|++.+. .
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHH
Confidence 76 8899999999999999876 8777777 8999999999999876666666 799999999999998876 3
Q ss_pred chhh--cCCCCCCeEeecCCcCccc--cCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEeccc
Q 035852 722 PLEL--CHLAFLKILVLAGNNLSGT--IPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGK 797 (960)
Q Consensus 722 p~~l--~~l~~L~~L~Ls~N~l~g~--ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (960)
|..+ ..+++|+.|++++|++++. +|..
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------------------------------------------------- 222 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSA------------------------------------------------- 222 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHH-------------------------------------------------
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHH-------------------------------------------------
Confidence 4455 7889999999999988731 1111
Q ss_pred chhhhhhhccccEEEccCCcccccCc-hhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCC
Q 035852 798 TLTFKAVLRLLTNIDLSNNKFSGEIP-AEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVN 876 (960)
Q Consensus 798 ~~~~~~~~~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~ 876 (960)
....+++|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..
T Consensus 223 ---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~ 294 (312)
T 1wwl_A 223 ---LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDE 294 (312)
T ss_dssp ---HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTT
T ss_pred ---HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hhh
Confidence 11223556899999999998876 45667889999999999998 7888877 8899999999999876 66 889
Q ss_pred CCCCCEEEcccCccee
Q 035852 877 LVFLSHFNISYNNLSG 892 (960)
Q Consensus 877 l~~L~~l~ls~N~l~g 892 (960)
++.|++|++++|++++
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 9999999999998876
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=254.50 Aligned_cols=227 Identities=22% Similarity=0.225 Sum_probs=161.1
Q ss_pred cccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852 609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG 688 (960)
Q Consensus 609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 688 (960)
.++.|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44555555555555556667777777777777777776666677777777777777777775555567777777777777
Q ss_pred CCcccccCchHHhhcCcccceeeeccccccccC-chhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852 689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVF-PLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI 767 (960)
Q Consensus 689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~ 767 (960)
+|++++ +|...+..+++|++|++++|+..+.+ +..+..+++|+.|++++|+++ .+|. +..
T Consensus 145 ~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~---------------- 205 (440)
T 3zyj_A 145 NNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP---------------- 205 (440)
T ss_dssp SCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT----------------
T ss_pred CCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC----------------
Confidence 777763 44333336777777777774433333 346777788888888888776 3332 211
Q ss_pred cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847 (960)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP 847 (960)
+++|+.|||++|++++..|..+.++++|+.|+|++|++++..|
T Consensus 206 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 206 -------------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp -------------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred -------------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 2345788888888888778888888888888888888888888
Q ss_pred hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce
Q 035852 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS 891 (960)
Q Consensus 848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~ 891 (960)
..|.++++|+.|||++|++++..+..+..++.|+.|++++|++.
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888888888888888888777777788888888888888764
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.9e-25 Score=254.33 Aligned_cols=249 Identities=20% Similarity=0.210 Sum_probs=211.6
Q ss_pred CCeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852 561 LGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640 (960)
Q Consensus 561 L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 640 (960)
.+.++.++..++......+++++.|++++|++.+..+ ..+.++++|+.|++++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4566666666665544556778888888888775443 345678999999999999998888899999999999999
Q ss_pred CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccccccc
Q 035852 641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGV 720 (960)
Q Consensus 641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~ 720 (960)
+|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|...+.+|...+..+++|++|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997767789999999999999999997777789999999999999966666777765568999999999999998 4
Q ss_pred CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchh
Q 035852 721 FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLT 800 (960)
Q Consensus 721 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (960)
+| .+..+++|+.|++++|++++..|..+..++.|
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------------------- 233 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL--------------------------------------------- 233 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTC---------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccC---------------------------------------------
Confidence 45 47889999999999999998778777665544
Q ss_pred hhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852 801 FKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG 868 (960)
Q Consensus 801 ~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 868 (960)
+.|+|++|++++..|..+.++++|+.|||++|++++..+..+..+++|+.|+|++|.+..
T Consensus 234 --------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 234 --------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp --------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred --------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 899999999999999999999999999999999998888888999999999999999864
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=4.3e-25 Score=253.83 Aligned_cols=249 Identities=18% Similarity=0.175 Sum_probs=213.6
Q ss_pred ccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCC
Q 035852 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689 (960)
Q Consensus 610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 689 (960)
...++.+++.++ .+|..+. +++++|+|++|++++..|..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456778887777 4666554 6899999999999998899999999999999999999998889999999999999999
Q ss_pred CcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCc-cccccccchhccCCCCccccc
Q 035852 690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT-CISNFTAMATFLGSDSIYTIQ 768 (960)
Q Consensus 690 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~~ 768 (960)
|+++ .+|...+..+++|++|++++|++.+..+..+..+++|+.|++++|+..+.+|. .+..+
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---------------- 195 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL---------------- 195 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC----------------
Confidence 9999 45555444799999999999999988788899999999999999766555554 23333
Q ss_pred CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCch
Q 035852 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPE 848 (960)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~ 848 (960)
++|+.|+|++|++++ +| .+..+++|+.|+|++|++++..|.
T Consensus 196 -------------------------------------~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 196 -------------------------------------FNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp -------------------------------------TTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGG
T ss_pred -------------------------------------CCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcc
Confidence 345899999999994 56 588999999999999999999999
Q ss_pred hhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCccCc
Q 035852 849 NIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLCGP 917 (960)
Q Consensus 849 ~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~ 917 (960)
.|.++++|+.|+|++|++++..|..+.++++|+.|++++|++++..|.. ..+..+....+.|||--|..
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 9999999999999999999999999999999999999999999644433 34555666678899987765
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.6e-25 Score=260.46 Aligned_cols=202 Identities=24% Similarity=0.266 Sum_probs=101.3
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (960)
++|+.|++++|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|.. +.+|+.|++
T Consensus 101 ~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L 168 (622)
T 3g06_A 101 PGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWA 168 (622)
T ss_dssp TTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEEC
Confidence 444444444444443 222 23455555555555552 3432 2455555555555552 3322 244555555
Q ss_pred CCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI 767 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~ 767 (960)
++|+++ .+| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..+
T Consensus 169 ~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~------------------ 220 (622)
T 3g06_A 169 YNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP------------------ 220 (622)
T ss_dssp CSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC------------------
T ss_pred CCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC------------------
Confidence 555555 344 134555555555555553 2321 345555556555554 222110
Q ss_pred cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847 (960)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP 847 (960)
++|+.|+|++|+|++ +| ..+++|+.|+|++|+++ .+|
T Consensus 221 --------------------------------------~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp 257 (622)
T 3g06_A 221 --------------------------------------SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP 257 (622)
T ss_dssp --------------------------------------TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred --------------------------------------CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCC
Confidence 123555566665553 44 33455556666666555 344
Q ss_pred hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
. .+++|+.|+|++|+++ .||..+.++++|+.|++++|+++|.+|.
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4 4455566666666665 5555555666666666666666655554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.1e-25 Score=259.88 Aligned_cols=225 Identities=22% Similarity=0.195 Sum_probs=189.6
Q ss_pred cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852 604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683 (960)
Q Consensus 604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 683 (960)
...+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..| ++.+++|++|+|++|.+++..+ .++|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcC
Confidence 3446689999999999998888899999999999999999987666 8899999999999999985432 38899
Q ss_pred EEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc-ccccchhccCCC
Q 035852 684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS-NFTAMATFLGSD 762 (960)
Q Consensus 684 ~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~l~~l~~~~~~~ 762 (960)
+|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++.+|..+. .++
T Consensus 103 ~L~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~--------- 169 (487)
T 3oja_A 103 TLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD--------- 169 (487)
T ss_dssp EEECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT---------
T ss_pred EEECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC---------
Confidence 999999999865443 478899999999999998888899999999999999999988777654 333
Q ss_pred CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852 763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF 842 (960)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 842 (960)
.|+.|+|++|+|++..+ +..++.|+.|||++|.+
T Consensus 170 --------------------------------------------~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 170 --------------------------------------------TLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp --------------------------------------------TCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred --------------------------------------------cccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence 34899999999997633 34688999999999999
Q ss_pred cccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce-ecCCC
Q 035852 843 SGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS-GEVPD 896 (960)
Q Consensus 843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~-g~iP~ 896 (960)
++. |+.++.+++|+.|||++|++++ +|..++.++.|+.|++++|++. |.+|.
T Consensus 204 ~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 204 AFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred CCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 974 4558999999999999999995 7888999999999999999987 65553
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2e-24 Score=254.17 Aligned_cols=269 Identities=23% Similarity=0.353 Sum_probs=226.1
Q ss_pred ccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccc
Q 035852 511 NHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKN 590 (960)
Q Consensus 511 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n 590 (960)
..++.|++++|++. .+|..+. ++|++|++++|.++. +|. .+++|++|++++|++++ +|..+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA--LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC--CCTTCCEEEECSCCCSC-CCCCCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC--cCCCCCEEEcCCCcCCc-CCCCCCCCCEEECcCC
Confidence 46899999999986 7787653 799999999999985 444 57899999999999985 5558899999999999
Q ss_pred cccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecc
Q 035852 591 KLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSG 670 (960)
Q Consensus 591 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 670 (960)
++++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+.+|+.|++++|++++
T Consensus 112 ~l~~l-~~-------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 112 PLTHL-PA-------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CCCCC-CC-------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCCC-CC-------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 99863 32 36889999999999986 5554 4899999999999984 554 35789999999999994
Q ss_pred cCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccc
Q 035852 671 TLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCIS 750 (960)
Q Consensus 671 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 750 (960)
+| ..+++|+.|++++|+++ .+|. .+++|+.|++++|.++. +|.. +++|+.|++++|++++ +|..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp~~-- 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL-- 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCCC--
T ss_pred -Cc---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CCCC--
Confidence 66 45789999999999998 4664 36799999999999984 5543 5889999999999985 5521
Q ss_pred ccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhc
Q 035852 751 NFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLR 830 (960)
Q Consensus 751 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~ 830 (960)
+ ++|+.|+|++|+|+ .+|. .++
T Consensus 240 -l-----------------------------------------------------~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 240 -P-----------------------------------------------------SELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp -C-----------------------------------------------------TTCCEEECCSSCCS-CCCC---CCT
T ss_pred -C-----------------------------------------------------CcCcEEECCCCCCC-cCCc---ccc
Confidence 1 23589999999999 6776 678
Q ss_pred ccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCC
Q 035852 831 ELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLV 878 (960)
Q Consensus 831 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 878 (960)
+|+.|+|++|+++ .||+.++++++|+.|+|++|.++|.+|..+.+++
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999999 8899999999999999999999999998776654
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.2e-26 Score=251.23 Aligned_cols=89 Identities=20% Similarity=0.243 Sum_probs=71.6
Q ss_pred cccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc-ccCCCCCCCCCCCCEEEc
Q 035852 807 LLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE-GEIPKNTVNLVFLSHFNI 885 (960)
Q Consensus 807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~-g~iP~~l~~l~~L~~l~l 885 (960)
+|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|+.+..+++|+.|++++|+++ +.+|..++.++.|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 192 KLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (317)
T ss_dssp TCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHH
T ss_pred cCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEEC
Confidence 35788888888884 4555888888888888888888 47888888888888999988888 778888888888888888
Q ss_pred c-cCcceecCCCC
Q 035852 886 S-YNNLSGEVPDE 897 (960)
Q Consensus 886 s-~N~l~g~iP~~ 897 (960)
+ .+.+.|..|..
T Consensus 270 ~~~~~l~~~~~~~ 282 (317)
T 3o53_A 270 QTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHSSSSCC
T ss_pred CCchhccCCchhc
Confidence 8 55688877754
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.3e-24 Score=229.18 Aligned_cols=227 Identities=20% Similarity=0.171 Sum_probs=188.7
Q ss_pred EecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcc
Q 035852 613 INLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEF 692 (960)
Q Consensus 613 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 692 (960)
++..+..++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..|.++++|++|++++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 4565553 5799999999999877777889999999999999999877777899999999999999999
Q ss_pred cccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCcc-ccCccccccccchhccCCCCcccccCCC
Q 035852 693 SGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSG-TIPTCISNFTAMATFLGSDSIYTIQYPS 771 (960)
Q Consensus 693 ~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~ip~~~~~l~~l~~~~~~~~~~~~~~~~ 771 (960)
++..|..+. .+++|++|++++|++.+..+..+..+++|+.|++++|++++ .+|..+++++.|
T Consensus 89 ~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L---------------- 151 (276)
T 2z62_A 89 QSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL---------------- 151 (276)
T ss_dssp CEECTTTTT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC----------------
T ss_pred CccChhhhc-CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC----------------
Confidence 876666665 78999999999999998777788999999999999999986 357766655444
Q ss_pred CCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccc----eeecCcccCcccCc
Q 035852 772 DFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELR----SLNLSHNFFSGRIP 847 (960)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~iP 847 (960)
+.|+|++|++++..|..+..++.|+ .|++++|.+++..|
T Consensus 152 -------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 152 -------------------------------------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -------------------------------------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -------------------------------------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 8999999999988888899888888 89999999997555
Q ss_pred hhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 848 ENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 848 ~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
. .....+|+.|+|++|++++..+..+.++++|+.|++++|++.+..|.-
T Consensus 195 ~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 195 G-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp T-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred c-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 4 444558999999999999777777899999999999999999988754
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-25 Score=243.40 Aligned_cols=243 Identities=21% Similarity=0.206 Sum_probs=198.8
Q ss_pred cEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEE
Q 035852 583 MVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLH 662 (960)
Q Consensus 583 ~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 662 (960)
+..+++.+.+.... ...+..+++|+.|++++|++++..|..+..+++|++|++++|++++..| +..+++|++|+
T Consensus 13 ~i~~ls~~~l~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 86 (317)
T 3o53_A 13 KIEKVTDSSLKQAL----ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD 86 (317)
T ss_dssp EEESCCTTTHHHHH----HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred eEeeccccchhhhH----HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence 34455555543222 2223446789999999999998888899999999999999999987655 88999999999
Q ss_pred CCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852 663 LRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742 (960)
Q Consensus 663 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 742 (960)
+++|++++.. ..++|++|++++|++++..+. .+++|++|++++|++++..|..+..+++|+.|++++|+++
T Consensus 87 Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 87 LNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred CcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 9999998533 348999999999999865443 4788999999999999888888999999999999999998
Q ss_pred cccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccC
Q 035852 743 GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEI 822 (960)
Q Consensus 743 g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~i 822 (960)
+..|..+. ..++.|+.|+|++|++++.
T Consensus 158 ~~~~~~~~----------------------------------------------------~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 158 TVNFAELA----------------------------------------------------ASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp EEEGGGGG----------------------------------------------------GGTTTCCEEECTTSCCCEE-
T ss_pred cccHHHHh----------------------------------------------------hccCcCCEEECCCCcCccc-
Confidence 76655442 1123459999999999965
Q ss_pred chhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcce-ecCCC
Q 035852 823 PAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLS-GEVPD 896 (960)
Q Consensus 823 p~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~-g~iP~ 896 (960)
|. ...+++|+.|+|++|++++ +|+.+..+++|+.|||++|+++ .+|..+..++.|+.|++++|++. +.+|.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 43 3458999999999999996 5666999999999999999999 68999999999999999999998 66654
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-27 Score=286.17 Aligned_cols=404 Identities=18% Similarity=0.109 Sum_probs=197.5
Q ss_pred cccCCCCCCEEeCCCCCCC-CCC-C------------ccccCCCCCCCEEeCCCCcccCCchhhhc-CCCCCcEEeCCCC
Q 035852 107 ALLDFEHLIYLNLSYNDFK-GIQ-I------------PRFLGSMGNLRFLDLSGAGFVGMIPNQIG-NLSNLQYLNLRPN 171 (960)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~-~~~-~------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n 171 (960)
.+.++++|++|+++++... ... . +.....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4567788999999887521 110 1 12234678888899988888777777775 6888888888887
Q ss_pred C-CCCCccCCcc-cccCCCccceeecCCCCCCCCC--CCcccccCCCCCCEEEccCCcCCCCCCCC----ccCCCCCcEE
Q 035852 172 Y-LGGLYVEDLG-WLYDLSLLENLDLSGVDLSKVS--NGPLVTNALRSLLVLQLAGCQLSHFPPLS----VANFSSLVTL 243 (960)
Q Consensus 172 ~-i~~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L 243 (960)
. ++. ..+. ....+++|++|++++|.+++.. ........+++|++|++++|. ..+.... +.++++|++|
T Consensus 141 ~~~~~---~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 141 EGFST---DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EEEEH---HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCH---HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEE
Confidence 3 221 1122 2235777777777777765532 122223355666666666665 1111111 1334666666
Q ss_pred eCCCCCCCCChhHHhhcCCCCCCEEeccCcc-------cCCCCcccccCCCCCCEE-eCCCCcCCCcchhhhcCCCCCCE
Q 035852 244 DLSHNQFDNSLIATQLYGLCNLVFLDLSDNN-------FQGPIPDTIQNWTSLRHL-DLSSNHFSYLIPEWLNKFSRLEY 315 (960)
Q Consensus 244 ~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~~p~~l~~l~~L~~ 315 (960)
++++|... ..++..+..+++|++|+++.+. +. .++..+.++++|+.| .+..... ..++..+..+++|++
T Consensus 217 ~L~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 217 KLNRAVPL-EKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTT 293 (594)
T ss_dssp ECCTTSCH-HHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCE
T ss_pred ecCCCCcH-HHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCE
Confidence 66666322 2355556666666666644332 11 123345555566655 2322211 223333344556666
Q ss_pred EeeeCccccccccHHHHhcCCCCCEEeCCCCCCCc-ccccccccCCCCCEEEcCC---------cccCCcchhhHHHhhc
Q 035852 316 LSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEW-KIPRSFSRFCNLRSISLSG---------IQLSHQKVSQVLAIFS 385 (960)
Q Consensus 316 L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~---------n~l~~~~~~~~~~~~~ 385 (960)
|++++|.+++......+..+++|++|++++| +.. .++.....+++|++|++.+ +.++......+...
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-- 370 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-- 370 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH--
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh--
Confidence 6666655543322233445556666666555 221 1111222355555555522 23332222222211
Q ss_pred cCCCCcccEEEcCCCCCCCchhhhhc-CCCCCCEEecC--C----CcCCCC-----CcccccCCCCCcEEecCCcccccc
Q 035852 386 GCVSDVLESLDLSNTTLSGSLTNQIG-KFKVLNSVDLS--E----NSISGQ-----VPWSLGKLSSLRYLDISNNQLNGT 453 (960)
Q Consensus 386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~ 453 (960)
.++|+.|.+..+.+++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++.
T Consensus 371 ---~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 371 ---CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp ---CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred ---chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 13355555555555544443333 35555555555 2 223211 111133445555555544 33322
Q ss_pred cchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCccc-ccCccCcEEeccCCCCcCCCchhHh
Q 035852 454 VSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWL-HSQNHLVNLDISDSGIVDTIPNRFW 532 (960)
Q Consensus 454 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~Ls~n~~~~~~~~~~~ 532 (960)
........+++|+.|++++|. +++.....+ ..+++|+.|++++|.+.+.....+.
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~------------------------i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~ 502 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAG------------------------DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA 502 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCC------------------------SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG
T ss_pred HHHHHHHhchhccEeeccCCC------------------------CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH
Confidence 222111124444444444444 332222222 3455566666666655333333334
Q ss_pred hcCCcccEEEccCccc
Q 035852 533 KSITQFNYLSLSNNQI 548 (960)
Q Consensus 533 ~~l~~L~~L~Ls~n~l 548 (960)
..+++|++|++++|.+
T Consensus 503 ~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 503 SKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGSSEEEEESSCC
T ss_pred HhCCCCCEEeeeCCCC
Confidence 4455666666666655
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=3.2e-26 Score=273.79 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=72.6
Q ss_pred HhhcCCCCCCEEeccCcccCC---CCc------------ccccCCCCCCEEeCCCCcCCCcchhhhc-CCCCCCEEeeeC
Q 035852 257 TQLYGLCNLVFLDLSDNNFQG---PIP------------DTIQNWTSLRHLDLSSNHFSYLIPEWLN-KFSRLEYLSLSS 320 (960)
Q Consensus 257 ~~l~~l~~L~~L~Ls~n~l~~---~~p------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~ 320 (960)
..+..+++|++|+++++.... ..| .....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 345556667777776654221 111 1124577888888888887776666665 678888888888
Q ss_pred c-cccccccHHHHhcCCCCCEEeCCCCCCCcccccccc----cCCCCCEEEcCCcc
Q 035852 321 N-RLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFS----RFCNLRSISLSGIQ 371 (960)
Q Consensus 321 n-~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~L~~n~ 371 (960)
| .++.........++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 8 444322224455788888888888877654444333 45677777766665
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-24 Score=250.77 Aligned_cols=223 Identities=22% Similarity=0.173 Sum_probs=192.4
Q ss_pred ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
...+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|++++ +| ..++|
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L 101 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSI 101 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTC
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCc
Confidence 3345689999999999998888899999999999999999997766 9999999999999999985 44 34899
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (960)
+.|++++|.+++..+. .+++|+.|++++|++++..|..+++++.|
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-------------------------------- 146 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-------------------------------- 146 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE--------------------------------
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC--------------------------------
Confidence 9999999999987664 36889999999999998888777665554
Q ss_pred cceEEEecccchhhhhhhccccEEEccCCcccccCchhhh-hhcccceeecCcccCcccCchhhccCCCCCEEECcCCcc
Q 035852 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEIT-VLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRL 866 (960)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 866 (960)
+.|||++|++++.+|..+. .+++|+.|+|++|.+++..+ +..+++|+.|||++|++
T Consensus 147 ---------------------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 147 ---------------------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp ---------------------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCC
T ss_pred ---------------------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCC
Confidence 8999999999999999987 79999999999999998633 45799999999999999
Q ss_pred cccCCCCCCCCCCCCEEEcccCcceecCCCC-cccCCCCccccCCCCCccCcc
Q 035852 867 EGEIPKNTVNLVFLSHFNISYNNLSGEVPDE-AQFATFDSSSYIGDEYLCGPV 918 (960)
Q Consensus 867 ~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lcg~~ 918 (960)
++.+ ..+..++.|+.|++++|++++ ||.. ..+..+....+.||+..|+.+
T Consensus 204 ~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 204 AFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 9754 458999999999999999997 6765 344566677789999998753
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.1e-23 Score=218.96 Aligned_cols=217 Identities=23% Similarity=0.296 Sum_probs=114.7
Q ss_pred CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCCCCCCEEeCCCCCCCCCCCccccCCCCCC
Q 035852 60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNL 139 (960)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L 139 (960)
.++|.|.|+.|.- .+.++.+++++. .+. .+|..+. +++++|++++|.+++. .+..++.+++|
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~-------------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK-------------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS-------------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC-------------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCC
Confidence 5789999999953 234455666553 222 3444332 4566666666666543 33455666666
Q ss_pred CEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCCEE
Q 035852 140 RFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLLVL 219 (960)
Q Consensus 140 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L 219 (960)
++|++++|++....+..+.++++|++|++++|.++.++. ..+..+++|++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------------~~~~~l~~L~~L 114 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-----------------------------GVFDQLVNLAEL 114 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-----------------------------TTTTTCSSCCEE
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-----------------------------hHcccccCCCEE
Confidence 666666666554444444555555555555554443221 223344455555
Q ss_pred EccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCCcC
Q 035852 220 QLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHF 299 (960)
Q Consensus 220 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 299 (960)
++++|.+++.++..|.++++|++|++++|.++ ...+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 55555555555555555555555555555554 33333345555555555555555544444455555555555555555
Q ss_pred CCcchhhhcCCCCCCEEeeeCcccc
Q 035852 300 SYLIPEWLNKFSRLEYLSLSSNRLQ 324 (960)
Q Consensus 300 ~~~~p~~l~~l~~L~~L~L~~n~l~ 324 (960)
++..+..+..+++|+.|++++|.+.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCHHHhccccCCCEEEecCCCee
Confidence 5444444444555555555555443
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.7e-23 Score=222.11 Aligned_cols=212 Identities=19% Similarity=0.169 Sum_probs=169.7
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (960)
+.++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++++|++++..|..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666777777777666667888888888888888888777778888888999999998888777788888889999999
Q ss_pred CCCcccccCchHHhhcCcccceeeecccccccc-CchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGV-FPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
++|++++..+..+. .+++|++|++++|++++. +|..+..+++|+.|++++|++++..+..+..+..+..
T Consensus 108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~--------- 177 (276)
T 2z62_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--------- 177 (276)
T ss_dssp TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence 99888854444454 788899999999988863 6888999999999999999998776666665555421
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhcccc-EEEccCCcccccCchhhhhhcccceeecCcccCccc
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLT-NIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR 845 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 845 (960)
+. .|++++|++++..|.. ....+|+.|+|++|++++.
T Consensus 178 -----------------------------------------l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~ 215 (276)
T 2z62_A 178 -----------------------------------------LNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSV 215 (276)
T ss_dssp -----------------------------------------CCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCC
T ss_pred -----------------------------------------cceeeecCCCcccccCccc-cCCCcccEEECCCCceeec
Confidence 12 7999999999655544 4445899999999999977
Q ss_pred CchhhccCCCCCEEECcCCcccccCC
Q 035852 846 IPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 846 iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
.+..++.+++|+.|+|++|++++..|
T Consensus 216 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 216 PDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHhHhcccccccEEEccCCcccccCC
Confidence 67778999999999999999997654
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.3e-23 Score=223.64 Aligned_cols=205 Identities=20% Similarity=0.202 Sum_probs=165.8
Q ss_pred ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
...+++|+.|++++|.++ .+ ..+..+++|++|++++|++++ + ..+..+++|++|++++|++++..|..+. .+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFD-KLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred cccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhc-CCcCC
Confidence 455677888888888876 33 357778888888888888875 2 4677888888888888888854444344 68888
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (960)
++|++++|++++..+..+..+++|+.|++++|++++..|..++.++.
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--------------------------------- 158 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN--------------------------------- 158 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---------------------------------
Confidence 88888888888777777888999999999999988665555554444
Q ss_pred cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
|+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|.+.
T Consensus 159 --------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 159 --------------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp --------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred --------------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 488999999999877777899999999999999999988888899999999999999998
Q ss_pred ccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 868 GEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 868 g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
|..| .|+.++++.|+++|.||..
T Consensus 219 ~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 219 CTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred ccCc-------HHHHHHHHHHhCCCcccCc
Confidence 7655 5888999999999999975
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-22 Score=215.38 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=137.3
Q ss_pred ccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852 634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR 713 (960)
Q Consensus 634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 713 (960)
.+.+++++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|+++ .+|..++..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 445555555555 3444333 45566666666665444445666666666666666665 4444443356666666666
Q ss_pred cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852 714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT 793 (960)
Q Consensus 714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (960)
+|++++..+..+..+++|+.|++++|++++..|..+..++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------------------------------------- 134 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--------------------------------------- 134 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------------------------------
Confidence 66666555555666777777777777776555544444333
Q ss_pred ecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCC
Q 035852 794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKN 873 (960)
Q Consensus 794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~ 873 (960)
|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..
T Consensus 135 --------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 135 --------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp --------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 377888888887655555788888888888888888766667888888888888888888766666
Q ss_pred CCCCCCCCEEEcccCcceecCC
Q 035852 874 TVNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 874 l~~l~~L~~l~ls~N~l~g~iP 895 (960)
+..++.|+.|++++|++....+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 8888888888888888776544
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=4.5e-23 Score=219.56 Aligned_cols=207 Identities=18% Similarity=0.170 Sum_probs=172.2
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
++.++.+++++|.++. + ..+..+++|++|++++|++++ + ..+..+++|++|++++|++++..+..|.++++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5677778888877763 2 357788899999999999885 3 4788889999999999999977777788999999999
Q ss_pred cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
+++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|..++.+++
T Consensus 116 L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------ 182 (272)
T 3rfs_A 116 LVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ------------ 182 (272)
T ss_dssp CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred CCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc------------
Confidence 999999855444444 7899999999999999877777889999999999999998766655555444
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI 846 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 846 (960)
|+.|++++|++++..|..++.+++|+.|+|++|.+.+..
T Consensus 183 -----------------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 183 -----------------------------------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp -----------------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred -----------------------------------------CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence 489999999999888888899999999999999998765
Q ss_pred chhhccCCCCCEEECcCCcccccCCCCCCCCC
Q 035852 847 PENIGAMALLESLDFSSNRLEGEIPKNTVNLV 878 (960)
Q Consensus 847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~ 878 (960)
| .|+.|+++.|.++|.+|..++++.
T Consensus 222 ~-------~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 222 P-------GIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp T-------TTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred c-------HHHHHHHHHHhCCCcccCcccccC
Confidence 4 688899999999999999988664
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=5.6e-25 Score=247.50 Aligned_cols=240 Identities=18% Similarity=0.251 Sum_probs=184.8
Q ss_pred ccCCCCcccEEecccccccCC----CCCcccCCCcccEEECCCC---ccccCCCcCc-------CCCCCCcEEECCCCee
Q 035852 603 ETNGTRLTQIINLEDNLLAGE----IPDCWMNWRYLLVLRLDNN---KFTGKLPTSL-------GALSLLRSLHLRNNNL 668 (960)
Q Consensus 603 ~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N---~l~~~~p~~l-------~~l~~L~~L~L~~N~l 668 (960)
.+..++.|+.|++++|.+++. ++..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|++
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 344566777777777777764 3334667788888888885 4445566554 6788899999999988
Q ss_pred cc----cCCcCCcCCCCCcEEecCCCcccccCchHHhh---cC---------cccceeeecccccc-ccCc---hhhcCC
Q 035852 669 SG----TLPVSLGNCTELETIDIGENEFSGNVPAWIGE---RF---------PRMIILILRSNKFH-GVFP---LELCHL 728 (960)
Q Consensus 669 ~~----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~l---------~~L~~L~L~~N~l~-~~~p---~~l~~l 728 (960)
++ .+|..+..+++|++|+|++|++++..+..+.. .+ ++|++|++++|+++ +.+| ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 86 47778888899999999999887554444432 22 88999999999987 4555 467788
Q ss_pred CCCCeEeecCCcCc--c---ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhh
Q 035852 729 AFLKILVLAGNNLS--G---TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKA 803 (960)
Q Consensus 729 ~~L~~L~Ls~N~l~--g---~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (960)
++|+.|++++|+++ | .+|..+.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------------------------------------------- 213 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLA----------------------------------------------------- 213 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGG-----------------------------------------------------
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhh-----------------------------------------------------
Confidence 89999999999886 2 1221222
Q ss_pred hhccccEEEccCCccc----ccCchhhhhhcccceeecCcccCccc----Cchhhc--cCCCCCEEECcCCcccc----c
Q 035852 804 VLRLLTNIDLSNNKFS----GEIPAEITVLRELRSLNLSHNFFSGR----IPENIG--AMALLESLDFSSNRLEG----E 869 (960)
Q Consensus 804 ~~~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~--~l~~L~~L~Ls~N~l~g----~ 869 (960)
.+++|+.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. +|..+. .+++|+.|+|++|++++ .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 2345689999999997 78899999999999999999999876 677774 49999999999999998 5
Q ss_pred CCCCC-CCCCCCCEEEcccCcceecCC
Q 035852 870 IPKNT-VNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 870 iP~~l-~~l~~L~~l~ls~N~l~g~iP 895 (960)
+|..+ .+++.|++|++++|++++..|
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhcCCCceEEEccCCcCCcchh
Confidence 88887 668999999999999997665
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.7e-22 Score=215.11 Aligned_cols=204 Identities=21% Similarity=0.208 Sum_probs=128.3
Q ss_pred ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
+.++++++++++++|.++ .+|..+. ++++.|++++|++++..|..|..+++|++|++++|++++ +|.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence 344555666666666665 4454443 456666666666665555566666666666666666653 3322 246666
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (960)
++|++++|+++ .+|..+..+++|+.|++++|++++..|..+..++.|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-------------------------------- 126 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-------------------------------- 126 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC--------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC--------------------------------
Confidence 66666666665 455566666777777777777765444444443333
Q ss_pred cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
+.|+|++|++++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus 127 ---------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 127 ---------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ---------------------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------------------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 66777777777555555667777777777777777544445566777777777777776
Q ss_pred ccCCCCCCCCCCCCEEEcccCccee
Q 035852 868 GEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 868 g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
.+|..+..+..|+.+++++|++..
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred -ccChhhcccccCCeEEeCCCCccC
Confidence 667777777777777777776643
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.3e-23 Score=224.41 Aligned_cols=142 Identities=19% Similarity=0.142 Sum_probs=85.8
Q ss_pred CcccEEecccccccCCCCCcc--cCCCcccEEECCCCccccCCC----cCcCCCCCCcEEECCCCeecccCCcCCcCCCC
Q 035852 608 RLTQIINLEDNLLAGEIPDCW--MNWRYLLVLRLDNNKFTGKLP----TSLGALSLLRSLHLRNNNLSGTLPVSLGNCTE 681 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 681 (960)
+.|+.|++++|.+++..|..+ ..+++|++|++++|++++..| ..+..+++|++|++++|++++..|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777777777777776 777778888888887776544 23445777777777777777766777777777
Q ss_pred CcEEecCCCccccc--Cch-HHhhcCcccceeeecccccccc--Cch-hhcCCCCCCeEeecCCcCccccCccc
Q 035852 682 LETIDIGENEFSGN--VPA-WIGERFPRMIILILRSNKFHGV--FPL-ELCHLAFLKILVLAGNNLSGTIPTCI 749 (960)
Q Consensus 682 L~~L~Ls~N~l~g~--ip~-~~~~~l~~L~~L~L~~N~l~~~--~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~ 749 (960)
|++|++++|++.+. ++. .....+++|++|++++|+++.. .+. .+..+++|++||+++|++++.+|..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 77777777776542 111 1111345555555555555411 111 12344555555555555544444433
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.6e-23 Score=233.01 Aligned_cols=237 Identities=20% Similarity=0.191 Sum_probs=142.9
Q ss_pred CcccEEecccccccCCCC----CcccCCC-cccEEECCCCccccCCCcCcCCC-----CCCcEEECCCCeecccCCcC--
Q 035852 608 RLTQIINLEDNLLAGEIP----DCWMNWR-YLLVLRLDNNKFTGKLPTSLGAL-----SLLRSLHLRNNNLSGTLPVS-- 675 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~-- 675 (960)
+.|+.|++++|.+++..+ ..+..++ +|++|+|++|++++..+..+..+ ++|++|+|++|++++..+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 345566666666555444 4555565 66677777776665555555443 66777777777766554443
Q ss_pred --CcCC-CCCcEEecCCCcccccCchHHhhc----CcccceeeeccccccccC----chhhcCCC-CCCeEeecCCcCcc
Q 035852 676 --LGNC-TELETIDIGENEFSGNVPAWIGER----FPRMIILILRSNKFHGVF----PLELCHLA-FLKILVLAGNNLSG 743 (960)
Q Consensus 676 --l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~----l~~L~~L~L~~N~l~~~~----p~~l~~l~-~L~~L~Ls~N~l~g 743 (960)
+..+ ++|++|++++|++++..+..+... .++|++|++++|++++.. +..+..++ +|+.|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3333 677777777777765544443321 246777777777776433 33344444 77777777777765
Q ss_pred ccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhh-ccccEEEccCCccccc-
Q 035852 744 TIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVL-RLLTNIDLSNNKFSGE- 821 (960)
Q Consensus 744 ~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~N~l~g~- 821 (960)
..+..+... + ... +.|+.|||++|++++.
T Consensus 182 ~~~~~l~~~--l-----------------------------------------------~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 182 KNCAELAKF--L-----------------------------------------------ASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp SCHHHHHHH--H-----------------------------------------------HTSCTTCCEEECTTSCGGGSC
T ss_pred hhHHHHHHH--H-----------------------------------------------HhCCCCCCEEECCCCCCChhH
Confidence 544433211 0 011 2457777777777753
Q ss_pred ---Cchhhhhh-cccceeecCcccCcccCch----hhccCCCCCEEECcCCcccc-------cCCCCCCCCCCCCEEEcc
Q 035852 822 ---IPAEITVL-RELRSLNLSHNFFSGRIPE----NIGAMALLESLDFSSNRLEG-------EIPKNTVNLVFLSHFNIS 886 (960)
Q Consensus 822 ---ip~~l~~l-~~L~~L~Ls~N~l~g~iP~----~l~~l~~L~~L~Ls~N~l~g-------~iP~~l~~l~~L~~l~ls 886 (960)
+|..+..+ ++|+.|||++|.+++..+. .+..+++|+.|+|++|++.+ .++..+.+++.|+.||++
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 45555553 4777777777777765442 33556777788888777432 234566777778888888
Q ss_pred cCcceec
Q 035852 887 YNNLSGE 893 (960)
Q Consensus 887 ~N~l~g~ 893 (960)
+|++.+.
T Consensus 293 ~N~l~~~ 299 (362)
T 3goz_A 293 GKEIHPS 299 (362)
T ss_dssp SCBCCGG
T ss_pred CCcCCCc
Confidence 8877655
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=7.3e-22 Score=211.78 Aligned_cols=205 Identities=21% Similarity=0.220 Sum_probs=173.5
Q ss_pred cCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852 604 TNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683 (960)
Q Consensus 604 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 683 (960)
+.++++++.++++++.++ .+|..+. +.+++|++++|++++..|..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 345678888999998888 4565554 6899999999999988888899999999999999999865432 7889999
Q ss_pred EEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCC
Q 035852 684 TIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDS 763 (960)
Q Consensus 684 ~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~ 763 (960)
+|++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|++++|++++..|..+..+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--------- 149 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK--------- 149 (290)
T ss_dssp EEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT---------
T ss_pred EEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC---------
Confidence 9999999998 7887665 7999999999999999888888999999999999999998655544444433
Q ss_pred cccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCc
Q 035852 764 IYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFS 843 (960)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 843 (960)
|+.|+|++|+|++..+..+..+++|+.|+|++|+++
T Consensus 150 --------------------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 150 --------------------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp --------------------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred --------------------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 489999999999655556788999999999999998
Q ss_pred ccCchhhccCCCCCEEECcCCccccc
Q 035852 844 GRIPENIGAMALLESLDFSSNRLEGE 869 (960)
Q Consensus 844 g~iP~~l~~l~~L~~L~Ls~N~l~g~ 869 (960)
.+|+.+..+..|+.|+|++|.+...
T Consensus 186 -~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 -TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp -CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred -ccChhhcccccCCeEEeCCCCccCc
Confidence 7899999999999999999998753
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=235.92 Aligned_cols=237 Identities=21% Similarity=0.260 Sum_probs=179.5
Q ss_pred cCcEEEcccccccccccchhhcccCCCCcccEEecccc---cccCCCCCcc-------cCCCcccEEECCCCcccc----
Q 035852 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDN---LLAGEIPDCW-------MNWRYLLVLRLDNNKFTG---- 646 (960)
Q Consensus 581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~N~l~~---- 646 (960)
+|+.|++++|++.+..+..++..+..+++|+.|++++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 34444444444444434444445566777788877774 4555566554 678899999999999986
Q ss_pred CCCcCcCCCCCCcEEECCCCeecccCCcC----CcCC---------CCCcEEecCCCccc-ccCch---HHhhcCcccce
Q 035852 647 KLPTSLGALSLLRSLHLRNNNLSGTLPVS----LGNC---------TELETIDIGENEFS-GNVPA---WIGERFPRMII 709 (960)
Q Consensus 647 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~----l~~l---------~~L~~L~Ls~N~l~-g~ip~---~~~~~l~~L~~ 709 (960)
.+|..+..+++|++|+|++|.+++..+.. +..+ ++|++|++++|+++ +.+|. .+. .+++|++
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~ 191 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ-SHRLLHT 191 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH-HCTTCCE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH-hCCCcCE
Confidence 46777888899999999999987543333 3334 89999999999997 45553 343 6889999
Q ss_pred eeecccccc--c---cCchhhcCCCCCCeEeecCCcCc----cccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852 710 LILRSNKFH--G---VFPLELCHLAFLKILVLAGNNLS----GTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF 780 (960)
Q Consensus 710 L~L~~N~l~--~---~~p~~l~~l~~L~~L~Ls~N~l~----g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (960)
|++++|+++ | ..|..+..+++|+.|+|++|.++ +.+|..+..++
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~--------------------------- 244 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP--------------------------- 244 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT---------------------------
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC---------------------------
Confidence 999999988 3 34557888999999999999986 45555544433
Q ss_pred ccccccccceEEEecccchhhhhhhccccEEEccCCccccc----Cchhhhh--hcccceeecCcccCcc----cCchhh
Q 035852 781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE----IPAEITV--LRELRSLNLSHNFFSG----RIPENI 850 (960)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~----ip~~l~~--l~~L~~L~Ls~N~l~g----~iP~~l 850 (960)
+|+.|+|++|++++. +|..+.. +++|+.|+|++|.+++ .+|..+
T Consensus 245 --------------------------~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 245 --------------------------NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp --------------------------TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred --------------------------CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 458999999999876 6777744 8999999999999998 589888
Q ss_pred -ccCCCCCEEECcCCcccccCC
Q 035852 851 -GAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 851 -~~l~~L~~L~Ls~N~l~g~iP 871 (960)
.++++|+.|+|++|++++..|
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSH
T ss_pred HhcCCCceEEEccCCcCCcchh
Confidence 679999999999999998764
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.6e-23 Score=233.00 Aligned_cols=259 Identities=18% Similarity=0.170 Sum_probs=161.6
Q ss_pred EcccCcCcCCCCCC---CccCcEEEcccccccccccchhhcccCCCC-cccEEecccccccCCCCCcccCC-----Cccc
Q 035852 565 DLSANNLSGQLPLL---ASNVMVLDLSKNKLSGSILHFVCHETNGTR-LTQIINLEDNLLAGEIPDCWMNW-----RYLL 635 (960)
Q Consensus 565 ~Ls~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~ 635 (960)
+++.|.+++.+|.. +.+|++|++++|.+.+..+..++..+..++ .|+.|++++|.+++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 34444444444332 233555555555555544444444455566 67777777777776666555554 7788
Q ss_pred EEECCCCccccCCCcCcC----CC-CCCcEEECCCCeecccCCcCC----cC-CCCCcEEecCCCcccccCchH----Hh
Q 035852 636 VLRLDNNKFTGKLPTSLG----AL-SLLRSLHLRNNNLSGTLPVSL----GN-CTELETIDIGENEFSGNVPAW----IG 701 (960)
Q Consensus 636 ~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~L~~N~l~~~~p~~l----~~-l~~L~~L~Ls~N~l~g~ip~~----~~ 701 (960)
+|++++|++++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|++++..+.. +.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 888888888766555433 33 678888888888876554433 23 357888888888887544333 33
Q ss_pred hcCc-ccceeeeccccccccCchhhc----CC-CCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCC
Q 035852 702 ERFP-RMIILILRSNKFHGVFPLELC----HL-AFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSF 775 (960)
Q Consensus 702 ~~l~-~L~~L~L~~N~l~~~~p~~l~----~l-~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 775 (960)
.++ +|++|++++|++++..+..+. .+ ++|+.||+++|++++.-...+..
T Consensus 164 -~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~------------------------ 218 (362)
T 3goz_A 164 -AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY------------------------ 218 (362)
T ss_dssp -TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH------------------------
T ss_pred -cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH------------------------
Confidence 343 788888888888776665443 34 58888888888876421111100
Q ss_pred CCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchh----hhhhcccceeecCcccCccc------
Q 035852 776 PGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAE----ITVLRELRSLNLSHNFFSGR------ 845 (960)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~L~Ls~N~l~g~------ 845 (960)
.+....+.|+.|||++|++++..+.. +..++.|+.|+|++|.+.+.
T Consensus 219 ------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 219 ------------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp ------------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred ------------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 00011235688888888888765533 34567888888888885433
Q ss_pred -CchhhccCCCCCEEECcCCcccccCCC
Q 035852 846 -IPENIGAMALLESLDFSSNRLEGEIPK 872 (960)
Q Consensus 846 -iP~~l~~l~~L~~L~Ls~N~l~g~iP~ 872 (960)
+++.+.++++|+.||+++|++.+..|.
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred HHHHHhccCCceEEEecCCCcCCCcchH
Confidence 344567778888888888888776443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.1e-22 Score=224.19 Aligned_cols=237 Identities=21% Similarity=0.176 Sum_probs=144.1
Q ss_pred CCCccccceeeCCCCCceEEEeCCCCCCcCCCcccccccccccccCccccCC--CCCCEEeCCCCCCCCCCCccccCCCC
Q 035852 60 GDCCKWAGVICDNFTGHVLELHLGNPWEDDHGHQAKESSALVGKINPALLDF--EHLIYLNLSYNDFKGIQIPRFLGSMG 137 (960)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~~g~i~~~l~~l--~~L~~L~Ls~n~~~~~~~p~~l~~l~ 137 (960)
.-|.+|.++.|+. ..++.+++++. .+. +..+..+ +++++|++++|.+.+. +..+..++
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~-------------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~--~~~~~~~~ 93 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGK-------------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP--LAEHFSPF 93 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTC-------------BCC---HHHHHHHHHTTCSEEECTTCEECSC--CCSCCCCB
T ss_pred HHHHHHHHHhcCc--hhheeeccccc-------------cCC---HHHHHhhhhccceEEEcCCcccccc--chhhccCC
Confidence 3567899999863 45777888764 222 2345555 7888888888888763 33356788
Q ss_pred CCCEEeCCCCcccCC-chhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCC
Q 035852 138 NLRFLDLSGAGFVGM-IPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSL 216 (960)
Q Consensus 138 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 216 (960)
+|++|++++|.+.+. +|..+.++++|++|++++|.++.
T Consensus 94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------------------------------- 132 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------------------------------- 132 (336)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-----------------------------------------
T ss_pred CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-----------------------------------------
Confidence 888888888887765 77777777778777777765432
Q ss_pred CEEEccCCcCCCCCCCCccCCCCCcEEeCCCC-CCCCChhHHhhcCCCCCCEEeccCc-ccCCC-CcccccCCC-CCCEE
Q 035852 217 LVLQLAGCQLSHFPPLSVANFSSLVTLDLSHN-QFDNSLIATQLYGLCNLVFLDLSDN-NFQGP-IPDTIQNWT-SLRHL 292 (960)
Q Consensus 217 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L 292 (960)
..+..++++++|++|++++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|
T Consensus 133 ------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 133 ------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp ------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred ------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 11223344455555555555 4442234555566666666666666 55533 345555666 66666
Q ss_pred eCCCC--cCC-CcchhhhcCCCCCCEEeeeCcc-ccccccHHHHhcCCCCCEEeCCCCC-CCcccccccccCCCCCEEEc
Q 035852 293 DLSSN--HFS-YLIPEWLNKFSRLEYLSLSSNR-LQGRISSVLLENLSSIQSLDLSFNE-LEWKIPRSFSRFCNLRSISL 367 (960)
Q Consensus 293 ~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L 367 (960)
++++| .++ +.+|..+..+++|++|++++|. +++..+ ..+..+++|++|++++|. +.......+..+++|++|++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 279 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEec
Confidence 66666 343 3345555666666666666666 444444 455666677777776663 22222224556666666665
Q ss_pred CCc
Q 035852 368 SGI 370 (960)
Q Consensus 368 ~~n 370 (960)
++|
T Consensus 280 ~~~ 282 (336)
T 2ast_B 280 FGI 282 (336)
T ss_dssp TTS
T ss_pred cCc
Confidence 555
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-22 Score=221.18 Aligned_cols=206 Identities=23% Similarity=0.246 Sum_probs=145.8
Q ss_pred CCcccEEECCCCccccCCCcCc--CCCCCCcEEECCCCeecccCC----cCCcCCCCCcEEecCCCcccccCchHHhhcC
Q 035852 631 WRYLLVLRLDNNKFTGKLPTSL--GALSLLRSLHLRNNNLSGTLP----VSLGNCTELETIDIGENEFSGNVPAWIGERF 704 (960)
Q Consensus 631 l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l 704 (960)
+++|++|++++|.+++..|..+ ..+++|++|++++|++++..| ..+..+++|++|++++|++++..|..+. .+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cC
Confidence 4568888888888887777777 777888888888888876554 3344677888888888888755555554 67
Q ss_pred cccceeeecccccccc--Cc--hhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcc
Q 035852 705 PRMIILILRSNKFHGV--FP--LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFF 780 (960)
Q Consensus 705 ~~L~~L~L~~N~l~~~--~p--~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (960)
++|++|++++|++.+. ++ ..+..+++|++|++++|+++. +|....
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~------------------------------ 217 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA------------------------------ 217 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH------------------------------
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH------------------------------
Confidence 7888888888876642 22 223567778888888877751 121100
Q ss_pred ccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhh---cccceeecCcccCcccCchhhccCCCCC
Q 035852 781 NITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVL---RELRSLNLSHNFFSGRIPENIGAMALLE 857 (960)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 857 (960)
...+.++.|+.||||+|++++.+|..++.+ ++|+.|+|++|+++ .+|..+. ++|+
T Consensus 218 -------------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~ 275 (310)
T 4glp_A 218 -------------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR 275 (310)
T ss_dssp -------------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS
T ss_pred -------------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC
Confidence 011234556888888888888878777777 58888888888888 6787765 7888
Q ss_pred EEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852 858 SLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 858 ~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
.|||++|++++. |. +..++.|+.|++++|+++.
T Consensus 276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 888888888863 33 5667888888888887763
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=9.4e-22 Score=205.16 Aligned_cols=203 Identities=16% Similarity=0.181 Sum_probs=133.3
Q ss_pred CCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-ecccCCcCCcCCCCCcEEecCC-CcccccCchHH
Q 035852 623 EIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-LSGTLPVSLGNCTELETIDIGE-NEFSGNVPAWI 700 (960)
Q Consensus 623 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~ 700 (960)
.+|. +. ++|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++ +|...
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-IDPDA 100 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-ECTTS
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-cCHHH
Confidence 4555 33 367777777777776666677777777777777776 6655555777777777777777 77774 34332
Q ss_pred hhcCcccceeeeccccccccCchhhcCCCCCC---eEeecCC-cCccccCccccccccchhccCCCCcccccCCCCCCCC
Q 035852 701 GERFPRMIILILRSNKFHGVFPLELCHLAFLK---ILVLAGN-NLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFP 776 (960)
Q Consensus 701 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~---~L~Ls~N-~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 776 (960)
+..+++|++|++++|++++ +|. +..+++|+ .|++++| ++++..+..+..++.
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~---------------------- 156 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN---------------------- 156 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS----------------------
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhc----------------------
Confidence 2367777777777777775 554 66666666 7777777 665443333443333
Q ss_pred CCccccccccccceEEEecccchhhhhhhcccc-EEEccCCcccccCchhhhhhcccceeecCccc-CcccCchhhccC-
Q 035852 777 GKFFNITEQFVEEELITLEGKTLTFKAVLRLLT-NIDLSNNKFSGEIPAEITVLRELRSLNLSHNF-FSGRIPENIGAM- 853 (960)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l- 853 (960)
|+ .|++++|+++ .+|......++|+.|+|++|+ +++..|..|+.+
T Consensus 157 -------------------------------L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 157 -------------------------------ETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp -------------------------------SEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred -------------------------------ceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccc
Confidence 36 7777777777 555554444677777777774 775555667777
Q ss_pred CCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852 854 ALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN 888 (960)
Q Consensus 854 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N 888 (960)
++|+.||+++|+++ .+|.. .+..|+.|+++++
T Consensus 205 ~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred cCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 77777777777776 34443 4566777777665
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.7e-21 Score=204.71 Aligned_cols=213 Identities=16% Similarity=0.144 Sum_probs=128.8
Q ss_pred CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceee
Q 035852 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711 (960)
Q Consensus 632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~ 711 (960)
...++++++++.++ .+|..+. ++++.|+|++|++++..|..|.++++|++|++++|++++.
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------- 74 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL---------------- 74 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC----------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc----------------
Confidence 34667777777776 5665554 4677777777777666666666666666666666666643
Q ss_pred eccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceE
Q 035852 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791 (960)
Q Consensus 712 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (960)
.|..+..+++|+.|++++|++++..|..+..++.
T Consensus 75 ---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------------------------------------- 108 (251)
T 3m19_A 75 ---------SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ------------------------------------- 108 (251)
T ss_dssp ---------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-------------------------------------
T ss_pred ---------CHhHhccCCcCCEEECCCCcccccChhHhcccCC-------------------------------------
Confidence 3333444555555555555555433333333222
Q ss_pred EEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 792 ITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 792 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++..|
T Consensus 109 ----------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 109 ----------------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp ----------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----------------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 3666666666665555556677777777777777776666567777888888888888877666
Q ss_pred CCCCCCCCCCEEEcccCcceecCCCCcccCCC------CccccCCCCCccCccccCCcCCC
Q 035852 872 KNTVNLVFLSHFNISYNNLSGEVPDEAQFATF------DSSSYIGDEYLCGPVLKKLCTVV 926 (960)
Q Consensus 872 ~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~------~~~~~~gn~~lcg~~~~~~c~~~ 926 (960)
..+.+++.|+.|++++|++++..+.-..+..+ ......|+ .+|+.|-...|...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 67777888888888888877764432222111 11112344 36776666677643
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.3e-22 Score=223.83 Aligned_cols=230 Identities=18% Similarity=0.227 Sum_probs=177.0
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccC-CCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGK-LPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
+.++.+++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5677888888888877665 45688899999999988765 777788889999999999998888888888889999999
Q ss_pred cCCC-ccccc-CchHHhhcCcccceeeeccc-ccccc-CchhhcCCC-CCCeEeecCCc--Cc-cccCccccccccchhc
Q 035852 687 IGEN-EFSGN-VPAWIGERFPRMIILILRSN-KFHGV-FPLELCHLA-FLKILVLAGNN--LS-GTIPTCISNFTAMATF 758 (960)
Q Consensus 687 Ls~N-~l~g~-ip~~~~~~l~~L~~L~L~~N-~l~~~-~p~~l~~l~-~L~~L~Ls~N~--l~-g~ip~~~~~l~~l~~~ 758 (960)
+++| .+++. +|..+. .+++|++|++++| .+++. ++..+..++ +|+.|++++|. ++ +.+|..+.
T Consensus 149 L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-------- 219 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-------- 219 (336)
T ss_dssp CTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------
T ss_pred CCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--------
Confidence 9998 67753 555554 7889999999999 88764 677788888 99999999884 44 23333222
Q ss_pred cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCc-ccccCchhhhhhcccceeec
Q 035852 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK-FSGEIPAEITVLRELRSLNL 837 (960)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~L 837 (960)
.+++|+.|++++|. +++..+..++++++|+.|+|
T Consensus 220 ---------------------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 220 ---------------------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp ---------------------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred ---------------------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 34556899999999 78888889999999999999
Q ss_pred Cccc-CcccCchhhccCCCCCEEECcCCcccccCCC-CCCCC-CCCCEEEcccCcceecCCCC
Q 035852 838 SHNF-FSGRIPENIGAMALLESLDFSSNRLEGEIPK-NTVNL-VFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 838 s~N~-l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l-~~L~~l~ls~N~l~g~iP~~ 897 (960)
++|. ++......++++++|+.|++++| +|. .+..+ ..+..|++++|+++|.+|..
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence 9995 33322236888999999999988 444 33333 34777789999999988863
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=198.26 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=98.1
Q ss_pred CcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEec
Q 035852 608 RLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDI 687 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (960)
...+.++++++.++ .+|..+. +.++.|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45778999999998 5666665 68999999999999988889999999999999999999888888999999999999
Q ss_pred CCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 742 (960)
++|++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 91 ~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 91 ANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCcccc-cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 9999984 44333225555666555555555444444444444444444444444
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=6.3e-21 Score=206.63 Aligned_cols=195 Identities=19% Similarity=0.289 Sum_probs=141.7
Q ss_pred ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
...+++|++|++++|.++ .+| .+..+++|++|++++|++++. +. +..+++|++|++++|++++ +| .+. .+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~-~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIA-GLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGT-TCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhc-CCCCC
Confidence 345667777777777776 344 567777788888888877743 33 7777888888888888774 44 343 67788
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (960)
++|++++|++++. | .+..+++|+.|++++|++++..| ++.+
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l----------------------------------- 150 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGL----------------------------------- 150 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGC-----------------------------------
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCC-----------------------------------
Confidence 8888888887753 3 27778888888888888764332 2222
Q ss_pred cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
++|+.|+|++|++++ +|. +..+++|+.|+|++|++++..| +..+++|+.|+|++|+++
T Consensus 151 ------------------~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 151 ------------------TNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp ------------------TTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred ------------------CCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 334788888888885 443 7888888888888888886443 788888888888888888
Q ss_pred ccCCCCCCCCCCCCEEEcccCccee
Q 035852 868 GEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 868 g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
+..| +.++++|+.|++++|++++
T Consensus 209 ~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 209 DVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp BCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cccc--ccCCCCCCEEEccCCeeec
Confidence 6554 7788888888888888875
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.8e-21 Score=198.63 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=162.7
Q ss_pred cccEEecccccccCCCCCcccCCCcccEEECCCCc-cccCCCcCcCCCCCCcEEECCC-CeecccCCcCCcCCCCCcEEe
Q 035852 609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNK-FTGKLPTSLGALSLLRSLHLRN-NNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~ 686 (960)
.++.|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56777777777777677788889999999999997 8766666888999999999998 899877778889999999999
Q ss_pred cCCCcccccCchHHhhcCcccc---eeeeccc-cccccCchhhcCCCCCC-eEeecCCcCccccCccccccccchhccCC
Q 035852 687 IGENEFSGNVPAWIGERFPRMI---ILILRSN-KFHGVFPLELCHLAFLK-ILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~---~L~L~~N-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
+++|++++ +|. +. .+++|+ +|++++| ++++..+..+..+++|+ .|++++|+++ .+|......
T Consensus 112 l~~n~l~~-lp~-~~-~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~--------- 178 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LT-KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG--------- 178 (239)
T ss_dssp EEEECCCS-CCC-CT-TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT---------
T ss_pred CCCCCCcc-ccc-cc-cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC---------
Confidence 99999985 776 43 688888 9999999 89887777899999999 9999999997 666532211
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCc-ccccCchhhhhh-cccceeecCc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNK-FSGEIPAEITVL-RELRSLNLSH 839 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~L~Ls~ 839 (960)
++|+.|+|++|+ +++..|..+..+ ++|+.|||++
T Consensus 179 --------------------------------------------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 179 --------------------------------------------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp --------------------------------------------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred --------------------------------------------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 235899999995 997767789999 9999999999
Q ss_pred ccCcccCchhhccCCCCCEEECcCCc
Q 035852 840 NFFSGRIPENIGAMALLESLDFSSNR 865 (960)
Q Consensus 840 N~l~g~iP~~l~~l~~L~~L~Ls~N~ 865 (960)
|++++ +|.. .+++|+.|+++++.
T Consensus 215 N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 215 TSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred Ccccc-CChh--HhccCceeeccCcc
Confidence 99984 6654 78899999998874
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7e-20 Score=198.40 Aligned_cols=194 Identities=24% Similarity=0.342 Sum_probs=118.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCCccccCCCCCCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCC
Q 035852 108 LLDFEHLIYLNLSYNDFKGIQIPRFLGSMGNLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDL 187 (960)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l 187 (960)
..++++|++|++++|.+.. ++ .+..+++|++|++++|++.+..+ ++++++|++|++++|.++.+ ..+..+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-----~~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-----SAIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-----GGGTTC
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-----hhhcCC
Confidence 4467788888888888875 44 57788888888888888776544 88888888888888877654 235566
Q ss_pred CccceeecCCCCCCCCCCCcccccCCCCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCE
Q 035852 188 SLLENLDLSGVDLSKVSNGPLVTNALRSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVF 267 (960)
Q Consensus 188 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 267 (960)
++|++|++++|.+++++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ +. +. +..+++|++
T Consensus 107 ~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~-~~-l~~l~~L~~ 177 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL-TP-LANLSKLTT 177 (308)
T ss_dssp TTCCEEECTTSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CC-GG-GTTCTTCCE
T ss_pred CCCCEEECCCCCCCCch----hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CC-hh-hcCCCCCCE
Confidence 66666666666665532 24555566666666665555443 555555555555555554 21 22 455555555
Q ss_pred EeccCcccCCCCcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCcccc
Q 035852 268 LDLSDNNFQGPIPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQ 324 (960)
Q Consensus 268 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 324 (960)
|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 5555555553222 4455555555555555554322 445555555555555544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.3e-20 Score=218.68 Aligned_cols=187 Identities=24% Similarity=0.327 Sum_probs=99.3
Q ss_pred cccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852 609 LTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG 688 (960)
Q Consensus 609 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 688 (960)
.++.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|+.|++++|++++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555554 444332 45666666666655 444 234556666666666654 444 433 56666666
Q ss_pred CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccccc
Q 035852 689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQ 768 (960)
Q Consensus 689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~ 768 (960)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +. ++
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------- 181 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------- 181 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT--------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC--------------
Confidence 666653 554 24556666666665554 343 34556666666665554 443 22 11
Q ss_pred CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhccc-------ceeecCccc
Q 035852 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLREL-------RSLNLSHNF 841 (960)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L-------~~L~Ls~N~ 841 (960)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+
T Consensus 182 ---------------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 182 ---------------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp ---------------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred ---------------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 255566666555 4554 433 44 556666666
Q ss_pred CcccCchhhccCCCCCEEECcCCcccccCCCCCCCC
Q 035852 842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNL 877 (960)
Q Consensus 842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l 877 (960)
|+ .||+.+..+++|+.|||++|+++|.+|..+.++
T Consensus 219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 65 355555556666666666666666555554443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=2.1e-20 Score=216.97 Aligned_cols=184 Identities=23% Similarity=0.350 Sum_probs=159.2
Q ss_pred CcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceee
Q 035852 632 RYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILI 711 (960)
Q Consensus 632 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~ 711 (960)
.+|+.|++++|.+++ +|..+. ++|++|+|++|+++ .+| ..+++|++|++++|++++ +|. +. . +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence 389999999999986 787664 88999999999999 788 457999999999999996 887 54 2 999999
Q ss_pred eccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceE
Q 035852 712 LRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEEL 791 (960)
Q Consensus 712 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (960)
+++|++++ +|. .+++|+.|++++|++++ +|. .+
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l--------------------------------------- 159 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP--------------------------------------- 159 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC---------------------------------------
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC---------------------------------------
Confidence 99999998 666 68999999999999986 665 12
Q ss_pred EEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCC-------CEEECcCC
Q 035852 792 ITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALL-------ESLDFSSN 864 (960)
Q Consensus 792 ~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L-------~~L~Ls~N 864 (960)
++|+.|+|++|+|++ +|. +. ++|+.|||++|+|+ .+|. +.. +| +.|+|++|
T Consensus 160 --------------~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 160 --------------TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp --------------TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSS
T ss_pred --------------CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCC
Confidence 235899999999996 887 76 89999999999999 7887 665 77 99999999
Q ss_pred cccccCCCCCCCCCCCCEEEcccCcceecCCCC
Q 035852 865 RLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 865 ~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
+++ .||..+.++++|+.|++++|+++|.+|..
T Consensus 218 ~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 218 RIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred cce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 999 69999999999999999999999998864
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=9e-20 Score=185.62 Aligned_cols=129 Identities=19% Similarity=0.193 Sum_probs=77.2
Q ss_pred EEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCc
Q 035852 612 IINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENE 691 (960)
Q Consensus 612 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 691 (960)
.++++++.++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45555555552 33333 2467777777777765555556667777777777777765545556666777777777776
Q ss_pred ccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccc
Q 035852 692 FSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGT 744 (960)
Q Consensus 692 l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 744 (960)
+++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 88 l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 88 LQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCc-cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee
Confidence 663 3333322566666666666666655555555666666666666666543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=5.6e-20 Score=187.18 Aligned_cols=175 Identities=17% Similarity=0.187 Sum_probs=99.7
Q ss_pred cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852 635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714 (960)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~ 714 (960)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|+++ .+|...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 45667777666 455443 346777777777776555555666666666666666666 33333222344444444444
Q ss_pred ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL 794 (960)
Q Consensus 715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (960)
|++++..+..+..+++|
T Consensus 86 n~l~~~~~~~~~~l~~L--------------------------------------------------------------- 102 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQL--------------------------------------------------------------- 102 (208)
T ss_dssp SCCCCCCTTTTTTCTTC---------------------------------------------------------------
T ss_pred CcCCccCHhHhcCccCC---------------------------------------------------------------
Confidence 44443333333333444
Q ss_pred cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCC
Q 035852 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNT 874 (960)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l 874 (960)
+.|+|++|++++..|..++.+++|+.|+|++|++++..+..++.+++|+.|++++|.+.+..
T Consensus 103 --------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---- 164 (208)
T 2o6s_A 103 --------------KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---- 164 (208)
T ss_dssp --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----
T ss_pred --------------CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----
Confidence 55555555555444444556666666666666666554445666666666666666665433
Q ss_pred CCCCCCCEEEcccCcceecCCCC
Q 035852 875 VNLVFLSHFNISYNNLSGEVPDE 897 (960)
Q Consensus 875 ~~l~~L~~l~ls~N~l~g~iP~~ 897 (960)
+.|++|+++.|+++|.||..
T Consensus 165 ---~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 165 ---PGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---TTTHHHHHHHHHCTTTBBCT
T ss_pred ---CCHHHHHHHHHhCCceeecc
Confidence 35666666667777766653
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=8.3e-19 Score=193.88 Aligned_cols=220 Identities=18% Similarity=0.163 Sum_probs=116.2
Q ss_pred ccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCc-CcCCCCCCcE-EECCCCeecccCCcCCcCCCCCcEEec
Q 035852 610 TQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPT-SLGALSLLRS-LHLRNNNLSGTLPVSLGNCTELETIDI 687 (960)
Q Consensus 610 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~-L~L~~N~l~~~~p~~l~~l~~L~~L~L 687 (960)
++.|++++|+++...+.+|.++++|++|+|++|++.+.+|. .|.+++++++ +.+.+|++++..|..|..+++|++|++
T Consensus 32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111 (350)
T ss_dssp CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence 44444444444433344566666666666666666544443 4555555543 444556666555566666666666666
Q ss_pred CCCcccccCchHHhhcCcccceeeecc-ccccccCchhhcCCC-CCCeEeecCCcCccccCccccccccchhccCCCCcc
Q 035852 688 GENEFSGNVPAWIGERFPRMIILILRS-NKFHGVFPLELCHLA-FLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIY 765 (960)
Q Consensus 688 s~N~l~g~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~ 765 (960)
++|++++ +|...+....++..+++.+ +++....+..+..+. .++.|++++|+++ .||......+
T Consensus 112 ~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~------------ 177 (350)
T 4ay9_X 112 SNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGT------------ 177 (350)
T ss_dssp EEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTE------------
T ss_pred ccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcccc------------
Confidence 6666653 3322221344555565544 344443334444443 4666677777665 3333222211
Q ss_pred cccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCch-hhhhhcccceeecCcccCcc
Q 035852 766 TIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPA-EITVLRELRSLNLSHNFFSG 844 (960)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g 844 (960)
+++.+++++|+..+.||. .|+.+++|+.||||+|+|+
T Consensus 178 -----------------------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~- 215 (350)
T 4ay9_X 178 -----------------------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH- 215 (350)
T ss_dssp -----------------------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-
T ss_pred -----------------------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-
Confidence 235666654333335554 3566666777777777666
Q ss_pred cCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852 845 RIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN 888 (960)
Q Consensus 845 ~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N 888 (960)
.+|. +.+.+|+.|.+.++.--..+|. +.++++|+.++++++
T Consensus 216 ~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 216 SLPS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred ccCh--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 3443 2244555555555544445663 566666666666654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=6.3e-19 Score=194.84 Aligned_cols=244 Identities=17% Similarity=0.151 Sum_probs=167.2
Q ss_pred cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcE-EecC
Q 035852 611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELET-IDIG 688 (960)
Q Consensus 611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~-L~Ls 688 (960)
+.++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677777777 566655 2578888888888885545567888888888888888766655 35777777664 5566
Q ss_pred CCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCc-cccccccchhccCCCCcccc
Q 035852 689 ENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPT-CISNFTAMATFLGSDSIYTI 767 (960)
Q Consensus 689 ~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~l~~l~~~~~~~~~~~~ 767 (960)
.|+++...|..+ ..+++|++|++++|++.+..+..+.....+..+++.++.-...+|. .+..+
T Consensus 89 ~N~l~~l~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~--------------- 152 (350)
T 4ay9_X 89 ANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--------------- 152 (350)
T ss_dssp ETTCCEECTTSB-CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS---------------
T ss_pred CCcccccCchhh-hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc---------------
Confidence 778874434443 3678888888888888776666666666777777766433223332 22211
Q ss_pred cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCc
Q 035852 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIP 847 (960)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP 847 (960)
...++.|+|++|+|+ .||.......+|+.|++++|+..+.||
T Consensus 153 -------------------------------------~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 153 -------------------------------------SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp -------------------------------------BSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCC
T ss_pred -------------------------------------chhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCC
Confidence 123588999999999 677777788899999999755555677
Q ss_pred h-hhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCCCcccCCCCccccCCCCCcc
Q 035852 848 E-NIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPDEAQFATFDSSSYIGDEYLC 915 (960)
Q Consensus 848 ~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc 915 (960)
+ .|+.+++|+.||||+|+++ .+|.. .+..|+.|.+.+++--..+|.-..|..+..... +|+.-|
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l-~~~~~c 259 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHC 259 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC-SCHHHH
T ss_pred HHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcC-CCCccc
Confidence 5 5799999999999999999 55553 245667777666655567886545555444332 344444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=183.17 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=120.8
Q ss_pred cEEecCCCcccccCchHHhhcCcccceeeeccccccccCc-hhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFP-LELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
+.+++++|.++ .+|..+ .+.+++|++++|++++..| ..+..+++|+.|++++|++++..|..+..++.|
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 35666666665 455543 2345666666666665544 346677888888888888876555555554443
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 841 (960)
+.|+|++|++++..|..++.+++|+.|+|++|+
T Consensus 84 -----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 84 -----------------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp -----------------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred -----------------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 788888888887777778889999999999999
Q ss_pred CcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852 842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
+++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9988889999999999999999999988899999999999999999999887653
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=176.22 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=100.0
Q ss_pred cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCC-cCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852 635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLP-VSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR 713 (960)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 713 (960)
+.+++++|.++ .+|..+. ..+++|+|++|++++..| ..|.. +++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~-------------------------l~~L~~L~L~ 65 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK-------------------------LPQLRKINFS 65 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG-------------------------CTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc-------------------------CCCCCEEECC
Confidence 45666666665 3454432 234555555555554433 22444 4555555555
Q ss_pred cccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEE
Q 035852 714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELIT 793 (960)
Q Consensus 714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (960)
+|++++..+..+..+++|+.|++++|++++..|..+..++.|
T Consensus 66 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------------------------------- 107 (220)
T 2v70_A 66 NNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL-------------------------------------- 107 (220)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC--------------------------------------
T ss_pred CCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC--------------------------------------
Confidence 555554445556666777777777777765555445444333
Q ss_pred ecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 794 LEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 794 ~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
+.|+|++|++++..|..+..+++|+.|+|++|++++..|..|+.+++|+.|+|++|.+++..+
T Consensus 108 ---------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 108 ---------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp ---------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ---------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 677777777777777777888888888888888888778888888888888888888876554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.5e-18 Score=182.39 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=45.9
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
|+.|++++|++++. ..++.+++|+.|+|++|++++..| ++.+++|+.|++++|++++ +|. +.++++|+.|++++
T Consensus 136 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVLELFS 209 (291)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEEEEEE
T ss_pred CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEEECcC
Confidence 35556666665533 345566666666666666665433 5666666666666666654 332 55666666666666
Q ss_pred Cccee
Q 035852 888 NNLSG 892 (960)
Q Consensus 888 N~l~g 892 (960)
|+++.
T Consensus 210 n~i~~ 214 (291)
T 1h6t_A 210 QECLN 214 (291)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 66554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.2e-18 Score=202.50 Aligned_cols=225 Identities=22% Similarity=0.301 Sum_probs=144.8
Q ss_pred cCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcE
Q 035852 581 NVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRS 660 (960)
Q Consensus 581 ~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 660 (960)
.+..+.+..+.+...++ ...++.|+.|++++|.+... | .+..+++|+.|+|++|++++..| +..+++|+.
T Consensus 22 ~l~~l~l~~~~i~~~~~------~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHTTCSCTTSEEC------HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHhccCCCcccccc------hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 44455566665554332 22356677778888777643 3 47777888888888888775444 777788888
Q ss_pred EECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCc
Q 035852 661 LHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNN 740 (960)
Q Consensus 661 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 740 (960)
|+|++|++.+ +| .+..+++|+.|+|++|++++ +|. +. .+++|+.|+|++|++++. ..+..+++|+.|+|++|+
T Consensus 92 L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp EECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSC
T ss_pred EECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCc
Confidence 8888888774 33 67777888888888888774 443 43 577777888877777764 467777777777777777
Q ss_pred CccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccc
Q 035852 741 LSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSG 820 (960)
Q Consensus 741 l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g 820 (960)
+++..| +..++ .|+.|+|++|+|++
T Consensus 165 l~~~~~--l~~l~-----------------------------------------------------~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 165 ISDIVP--LAGLT-----------------------------------------------------KLQNLYLSKNHISD 189 (605)
T ss_dssp CCCCGG--GTTCT-----------------------------------------------------TCCEEECCSSCCCB
T ss_pred CCCchh--hccCC-----------------------------------------------------CCCEEECcCCCCCC
Confidence 776544 33332 33677777777775
Q ss_pred cCchhhhhhcccceeecCcccCccc---------Cchhh----ccCCCCCEEECcCCcccccCCCCCCCCCC
Q 035852 821 EIPAEITVLRELRSLNLSHNFFSGR---------IPENI----GAMALLESLDFSSNRLEGEIPKNTVNLVF 879 (960)
Q Consensus 821 ~ip~~l~~l~~L~~L~Ls~N~l~g~---------iP~~l----~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~ 879 (960)
+| .+..+++|+.|+|++|.+++. +|..+ +.....+.+....+-..|.+|..+.++..
T Consensus 190 -l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~ 259 (605)
T 1m9s_A 190 -LR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259 (605)
T ss_dssp -CG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEESTTCEEETTEEECCCSSCCS
T ss_pred -Ch-HHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhcccCCcccCCcceeccccccc
Confidence 33 577777777777777777664 22222 22233444444555555666665555443
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.6e-18 Score=183.18 Aligned_cols=174 Identities=23% Similarity=0.344 Sum_probs=134.6
Q ss_pred ccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCccc
Q 035852 628 WMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRM 707 (960)
Q Consensus 628 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L 707 (960)
+..+++|++|++++|.+.. +| .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +|. +. .+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~-~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LK-DLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GT-TCTTC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hc-cCCCC
Confidence 3456778888888888773 33 47778888888888888875433 7788888888888888874 443 44 68888
Q ss_pred ceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccc
Q 035852 708 IILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFV 787 (960)
Q Consensus 708 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (960)
++|++++|++++. ..+..+++|+.|++++|++++. ..++.
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~------------------------------------ 154 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR------------------------------------ 154 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG------------------------------------
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc------------------------------------
Confidence 8888888888764 4677888999999999988753 22322
Q ss_pred cceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 788 EEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
+++|+.|+|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|++++|+++
T Consensus 155 -----------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 155 -----------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -----------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -----------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 2345899999999986555 8899999999999999986 55 4899999999999999998
Q ss_pred cc
Q 035852 868 GE 869 (960)
Q Consensus 868 g~ 869 (960)
..
T Consensus 214 ~~ 215 (291)
T 1h6t_A 214 NK 215 (291)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=9.9e-18 Score=171.68 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=104.7
Q ss_pred cEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCC
Q 035852 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD 762 (960)
Q Consensus 683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~ 762 (960)
+.+++++|.++ .+|..+ .++++.|++++|++++..+..+..+++|+.|++++|++++..|..+..++.|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 34555555555 455433 2456666666666665555566667777777777777766656655544433
Q ss_pred CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852 763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF 842 (960)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 842 (960)
+.|+|++|+|++..+..+..+++|+.|+|++|++
T Consensus 83 ----------------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 83 ----------------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp ----------------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCC
Confidence 6777777777744444467777788888888888
Q ss_pred cccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCccee
Q 035852 843 SGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSG 892 (960)
Q Consensus 843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g 892 (960)
++..|..|+.+++|+.|+|++|++++..|..+..+++|++|++++|++..
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777777888888888888888887777777778888888888887764
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.5e-17 Score=171.51 Aligned_cols=156 Identities=26% Similarity=0.248 Sum_probs=120.7
Q ss_pred CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
-+.++.++++++ .+|..+ .++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..++.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~------- 89 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ------- 89 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence 456777777665 666543 367777777777777777777788888888888888886433333444333
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 841 (960)
|+.|+|++|+|++..|..+..+++|+.|+|++|+
T Consensus 90 ----------------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 90 ----------------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp ----------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 4788888888887666667888899999999999
Q ss_pred CcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccCcceecCC
Q 035852 842 FSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYNNLSGEVP 895 (960)
Q Consensus 842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N~l~g~iP 895 (960)
++ .+|..++.+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 88 788888999999999999999987767778889999999999998887665
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=8.2e-19 Score=211.75 Aligned_cols=131 Identities=21% Similarity=0.321 Sum_probs=84.7
Q ss_pred cccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccc
Q 035852 615 LEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSG 694 (960)
Q Consensus 615 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 694 (960)
++.|++. ..|..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|+++ .+|..|.++++|++|+|++|+++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 3344444 45566777777777777777776 66666667777777777777777 67777777777777777777777
Q ss_pred cCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccc
Q 035852 695 NVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISN 751 (960)
Q Consensus 695 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 751 (960)
.+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|+++|.+|..+..
T Consensus 284 ~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 284 SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 6677665 5777777777777775 56666777777777777777777776665544
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.8e-18 Score=208.70 Aligned_cols=195 Identities=17% Similarity=0.180 Sum_probs=128.3
Q ss_pred EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccc
Q 035852 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK 716 (960)
Q Consensus 637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~ 716 (960)
++++.|++. ..|..+..++.|+.|+|++|++. .+|..+.++++|++|+|++|+++ .+|..+. .+++|++|+|++|+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCc
Confidence 344556655 56788899999999999999998 78888889999999999999999 8998886 79999999999999
Q ss_pred ccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecc
Q 035852 717 FHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEG 796 (960)
Q Consensus 717 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (960)
|+ .+|..++.+++|++|+|++|.++ .+|..|++++.|
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L----------------------------------------- 318 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL----------------------------------------- 318 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-----------------------------------------
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-----------------------------------------
Confidence 99 78999999999999999999996 788877766655
Q ss_pred cchhhhhhhccccEEEccCCcccccCchhhhhhcc-cceeecCcccCcccCchhhccCCCCCEEECcCC--------ccc
Q 035852 797 KTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE-LRSLNLSHNFFSGRIPENIGAMALLESLDFSSN--------RLE 867 (960)
Q Consensus 797 ~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~-L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N--------~l~ 867 (960)
+.|+|++|+|+|.+|..++.+.. +..++|++|.++|.+|+. |+.|++++| .+.
T Consensus 319 ------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~ 380 (727)
T 4b8c_D 319 ------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQ 380 (727)
T ss_dssp ------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------
T ss_pred ------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCcc
Confidence 88999999999999999887643 345899999999999875 455667777 455
Q ss_pred ccCCCCCCCCCCCCEEEcccCcceecCCC
Q 035852 868 GEIPKNTVNLVFLSHFNISYNNLSGEVPD 896 (960)
Q Consensus 868 g~iP~~l~~l~~L~~l~ls~N~l~g~iP~ 896 (960)
+.++..+.++..+....+++|-+.+....
T Consensus 381 ~~~~~~~~~l~~~~~~~ls~Nil~~~~~~ 409 (727)
T 4b8c_D 381 QSTEHLATDLAKRTFTVLSYNTLCQHYAT 409 (727)
T ss_dssp ---------------------CCCGGGCC
T ss_pred ccccchhhcccccceeeeeccccccccCc
Confidence 55555667778888889999988765544
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.5e-20 Score=215.72 Aligned_cols=87 Identities=26% Similarity=0.372 Sum_probs=72.6
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccC-CCCCCCCCCCCEEEcc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEI-PKNTVNLVFLSHFNIS 886 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~l~ls 886 (960)
|+.|+|++|+|+ .+|..++++++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..++++++|+.|+++
T Consensus 465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence 378888888888 788888888888888888888886 67 7888888888888888888877 8888888888888888
Q ss_pred cCcceecCCCC
Q 035852 887 YNNLSGEVPDE 897 (960)
Q Consensus 887 ~N~l~g~iP~~ 897 (960)
+|+++|.+|..
T Consensus 542 ~N~l~~~~~~~ 552 (567)
T 1dce_A 542 GNSLCQEEGIQ 552 (567)
T ss_dssp TSGGGGSSSCT
T ss_pred CCcCCCCccHH
Confidence 88888876644
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.1e-19 Score=210.09 Aligned_cols=197 Identities=18% Similarity=0.173 Sum_probs=158.7
Q ss_pred cCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCe-------------ecccCCcCCcCCCCCcEEe-cCCCcccc
Q 035852 629 MNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNN-------------LSGTLPVSLGNCTELETID-IGENEFSG 694 (960)
Q Consensus 629 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~g 694 (960)
..++.|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45788999999999997 789999999999999998775 5667778888888898888 6776554
Q ss_pred cCchH------Hhh-cCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccc
Q 035852 695 NVPAW------IGE-RFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTI 767 (960)
Q Consensus 695 ~ip~~------~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~ 767 (960)
.++.. +.. ....|+.|++++|++++ +|. ++.+++|+.|++++|+++ .+|..+++++.|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L------------ 488 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL------------ 488 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC------------
Confidence 23321 100 12368899999999986 565 888999999999999998 788877666554
Q ss_pred cCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC-
Q 035852 768 QYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI- 846 (960)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i- 846 (960)
+.|+|++|+|++ +| .++++++|+.|+|++|++++.+
T Consensus 489 -----------------------------------------~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~ 525 (567)
T 1dce_A 489 -----------------------------------------EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAA 525 (567)
T ss_dssp -----------------------------------------CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred -----------------------------------------CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCC
Confidence 899999999996 78 8999999999999999999887
Q ss_pred chhhccCCCCCEEECcCCcccccCCCC---CCCCCCCCEEEc
Q 035852 847 PENIGAMALLESLDFSSNRLEGEIPKN---TVNLVFLSHFNI 885 (960)
Q Consensus 847 P~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~l~l 885 (960)
|..++.+++|+.|+|++|++++.+|.. +..+++|+.||+
T Consensus 526 p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 526 IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999999999999999999876643 123678888864
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.3e-17 Score=192.62 Aligned_cols=126 Identities=30% Similarity=0.400 Sum_probs=58.0
Q ss_pred CCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852 606 GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685 (960)
Q Consensus 606 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (960)
.++.|+.|+|++|++++..| +..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++.+ + +.+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 34445555555555444332 4444555555555554442 22 34444555555555555443 1 234444555555
Q ss_pred ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCc
Q 035852 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLS 742 (960)
Q Consensus 686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 742 (960)
+|++|++++ + ..+. .+++|+.|+|++|++.+..| +..+++|+.|+|++|+++
T Consensus 137 ~Ls~N~l~~-l-~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 137 YLGNNKITD-I-TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECCSSCCCC-C-GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCccCC-c-hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 555555443 2 1222 34455555555555544333 444455555555555444
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.4e-17 Score=182.89 Aligned_cols=179 Identities=22% Similarity=0.233 Sum_probs=144.8
Q ss_pred cEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcC-CCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCC
Q 035852 611 QIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLG-ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGE 689 (960)
Q Consensus 611 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 689 (960)
+.++++++.++. +|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578999999885 666554 4689999999999988777787 899999999999999988888899999999999999
Q ss_pred CcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcc-ccccccchhccCCCCccccc
Q 035852 690 NEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTC-ISNFTAMATFLGSDSIYTIQ 768 (960)
Q Consensus 690 N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~l~~l~~~~~~~~~~~~~ 768 (960)
|++++..+..+ ..+++|++|+|++|++++..|..|..+++|+.|+|++|++++ +|.. +..+
T Consensus 98 N~l~~~~~~~~-~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~---------------- 159 (361)
T 2xot_A 98 NHLHTLDEFLF-SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDG---------------- 159 (361)
T ss_dssp SCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC------------------
T ss_pred CcCCcCCHHHh-CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCc----------------
Confidence 99985444444 479999999999999998888899999999999999999985 4432 2111
Q ss_pred CCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcc--cceeecCcccCcc
Q 035852 769 YPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRE--LRSLNLSHNFFSG 844 (960)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~L~Ls~N~l~g 844 (960)
..+++|+.|||++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 160 ----------------------------------~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 160 ----------------------------------NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ----------------------------------ccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 12345689999999999666677888877 4889999998874
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=3.4e-17 Score=167.67 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=100.4
Q ss_pred cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852 635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714 (960)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~ 714 (960)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 46677777766 5565443 566666666666665555556666666666666665554
Q ss_pred ccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEe
Q 035852 715 NKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITL 794 (960)
Q Consensus 715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (960)
..|..|..+++|++|+|++|++++..+..+..++
T Consensus 71 -----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~----------------------------------------- 104 (220)
T 2v9t_B 71 -----LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF----------------------------------------- 104 (220)
T ss_dssp -----ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------------------------------------
T ss_pred -----cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC-----------------------------------------
Confidence 4444555566666666666666533222233332
Q ss_pred cccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852 795 EGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG 868 (960)
Q Consensus 795 ~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 868 (960)
+|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+..
T Consensus 105 ------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 105 ------------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ------------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 23677777777777777777788888888888888887777778888888888888888865
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2e-17 Score=166.40 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=54.5
Q ss_pred cEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcccC
Q 035852 809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISYN 888 (960)
Q Consensus 809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~N 888 (960)
+.|++++|++++..|..++.+++|+.|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+.++++|++|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 667777777776677777777777777777776334555 57777777777777777765 33 5667777777777777
Q ss_pred ccee
Q 035852 889 NLSG 892 (960)
Q Consensus 889 ~l~g 892 (960)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 7653
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=6e-17 Score=167.07 Aligned_cols=157 Identities=18% Similarity=0.261 Sum_probs=104.8
Q ss_pred cccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeee
Q 035852 633 YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILIL 712 (960)
Q Consensus 633 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L 712 (960)
+.+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+++ .+|...
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~------------ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV------------ 83 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhh------------
Confidence 3566788887776 6666554 67777777777777766777777777777777777775 444333
Q ss_pred ccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEE
Q 035852 713 RSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELI 792 (960)
Q Consensus 713 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (960)
+..+++|+.|++++|++++..+..+..++.
T Consensus 84 ------------~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~-------------------------------------- 113 (229)
T 3e6j_A 84 ------------FDSLTQLTVLDLGTNQLTVLPSAVFDRLVH-------------------------------------- 113 (229)
T ss_dssp ------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTT--------------------------------------
T ss_pred ------------cccCCCcCEEECCCCcCCccChhHhCcchh--------------------------------------
Confidence 344555555555555555433333333322
Q ss_pred EecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 793 TLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 793 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+..+
T Consensus 114 ---------------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 114 ---------------LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp ---------------CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ---------------hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 366777777776 677777777778888888888876666667778888888888888776544
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=2.7e-17 Score=165.48 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=93.9
Q ss_pred CCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCe
Q 035852 654 ALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKI 733 (960)
Q Consensus 654 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 733 (960)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..|..+..+++|+.
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3444555555555554 334 3555555555555555443 222 333 4666666666666666656666666777777
Q ss_pred EeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEc
Q 035852 734 LVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDL 813 (960)
Q Consensus 734 L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 813 (960)
|++++|++++..|..++.++. |+.|+|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~-----------------------------------------------------L~~L~L 143 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPK-----------------------------------------------------VNSIDL 143 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSS-----------------------------------------------------CCEEEC
T ss_pred EEecCCccCcHhHHHHhhCCC-----------------------------------------------------CCEEEc
Confidence 777777776655555544333 367777
Q ss_pred cCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccc
Q 035852 814 SNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEG 868 (960)
Q Consensus 814 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g 868 (960)
++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 7777334566 57778888888888888875 44 67788888888888887754
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=8.5e-17 Score=178.44 Aligned_cols=177 Identities=24% Similarity=0.217 Sum_probs=145.6
Q ss_pred CeEEcccCcCcCCCCCCCccCcEEEcccccccccccchhhcccC-CCCcccEEecccccccCCCCCcccCCCcccEEECC
Q 035852 562 GTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILHFVCHETN-GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLD 640 (960)
Q Consensus 562 ~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 640 (960)
+.++++++.++......+..++.|++++|++++..+. .+. ++++|+.|++++|++++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4566666666654334456677777777777654332 233 67899999999999998888899999999999999
Q ss_pred CCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHh---hcCcccceeeeccccc
Q 035852 641 NNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG---ERFPRMIILILRSNKF 717 (960)
Q Consensus 641 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~---~~l~~L~~L~L~~N~l 717 (960)
+|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|+++ .+|..++ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 99999877778999999999999999999888999999999999999999999 5777664 3689999999999999
Q ss_pred cccCchhhcCCCC--CCeEeecCCcCcc
Q 035852 718 HGVFPLELCHLAF--LKILVLAGNNLSG 743 (960)
Q Consensus 718 ~~~~p~~l~~l~~--L~~L~Ls~N~l~g 743 (960)
++..+..+..++. ++.|++++|++..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 9777778888887 4889999999864
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=3.2e-17 Score=164.00 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=82.6
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
|+.|+|++|++++.+|..++.+++|+.|+|++|++++..|..|+.+++|+.|||++|++++.+|..+..+++|++|++++
T Consensus 56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 47788888888877788888888888888888888888777788888888888888888888888888888888888888
Q ss_pred CcceecCCCCcccCC-CCccccCCCCCccCcc
Q 035852 888 NNLSGEVPDEAQFAT-FDSSSYIGDEYLCGPV 918 (960)
Q Consensus 888 N~l~g~iP~~~~~~~-~~~~~~~gn~~lcg~~ 918 (960)
|+++|..|.. .+.. +....+.++...|+.|
T Consensus 136 N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 136 NPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred CCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence 8888776632 1111 2222345555567654
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=3.6e-17 Score=172.49 Aligned_cols=171 Identities=20% Similarity=0.263 Sum_probs=99.1
Q ss_pred CCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccce
Q 035852 630 NWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMII 709 (960)
Q Consensus 630 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~ 709 (960)
++.++..+++++|.+++. + .+..+++|+.|++++|+++ .+| .+..+++|++|++++|++++ +|.
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~----------- 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP----------- 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-----------
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-----------
Confidence 345566666777766632 2 4556666666666666665 344 45556666666666666553 222
Q ss_pred eeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCccccccccccc
Q 035852 710 LILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEE 789 (960)
Q Consensus 710 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (960)
+..+++|+.|++++|++++ +|....
T Consensus 81 ---------------l~~l~~L~~L~L~~N~l~~-l~~~~~--------------------------------------- 105 (263)
T 1xeu_A 81 ---------------LKDLTKLEELSVNRNRLKN-LNGIPS--------------------------------------- 105 (263)
T ss_dssp ---------------GTTCSSCCEEECCSSCCSC-CTTCCC---------------------------------------
T ss_pred ---------------hccCCCCCEEECCCCccCC-cCcccc---------------------------------------
Confidence 4445555555555555542 121000
Q ss_pred eEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccccc
Q 035852 790 ELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGE 869 (960)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 869 (960)
+.|+.|+|++|++++ +| .++.+++|+.|||++|++++. | .++.+++|+.|+|++|++++.
T Consensus 106 ----------------~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 106 ----------------ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp ----------------SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred ----------------CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 123566666666664 33 466666677777777776653 3 466677777777777777655
Q ss_pred CCCCCCCCCCCCEEEcccCcceec
Q 035852 870 IPKNTVNLVFLSHFNISYNNLSGE 893 (960)
Q Consensus 870 iP~~l~~l~~L~~l~ls~N~l~g~ 893 (960)
..+..++.|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5566677777777777776654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=6.4e-17 Score=170.54 Aligned_cols=170 Identities=21% Similarity=0.285 Sum_probs=118.9
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
+..+..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..| +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 556777889999988654 5788999999999999998 566 78999999999999999996544 99999999999
Q ss_pred cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCccc
Q 035852 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYT 766 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~ 766 (960)
+++|++++ +|... . ++|+.|++++|++++. + .+..+++|
T Consensus 92 L~~N~l~~-l~~~~--~-~~L~~L~L~~N~l~~~-~-~l~~l~~L----------------------------------- 130 (263)
T 1xeu_A 92 VNRNRLKN-LNGIP--S-ACLSRLFLDNNELRDT-D-SLIHLKNL----------------------------------- 130 (263)
T ss_dssp CCSSCCSC-CTTCC--C-SSCCEEECCSSCCSBS-G-GGTTCTTC-----------------------------------
T ss_pred CCCCccCC-cCccc--c-CcccEEEccCCccCCC-h-hhcCcccc-----------------------------------
Confidence 99999984 54321 1 4555555555554432 1 23334444
Q ss_pred ccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCcccC
Q 035852 767 IQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRI 846 (960)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 846 (960)
+.|+|++|++++ +| .++.+++|+.|+|++|++++.
T Consensus 131 ------------------------------------------~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 131 ------------------------------------------EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp ------------------------------------------CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred ------------------------------------------cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-
Confidence 555555555553 23 456666666666666666654
Q ss_pred chhhccCCCCCEEECcCCccccc
Q 035852 847 PENIGAMALLESLDFSSNRLEGE 869 (960)
Q Consensus 847 P~~l~~l~~L~~L~Ls~N~l~g~ 869 (960)
+.+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4566666777777777776654
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=8.4e-17 Score=160.94 Aligned_cols=132 Identities=23% Similarity=0.296 Sum_probs=85.3
Q ss_pred cEEecCCCcccccCchHHhhcCcccceeeeccccccccCch-hhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPL-ELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
+++++++|+++ .+|..+. +++++|++++|++++..+. .+..+++|+.|++++|++++..|..+..++.|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 45555555553 4554332 2555666666665544443 35666677777777777766666555544433
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 841 (960)
+.|+|++|+|++..|..++.+++|+.|+|++|+
T Consensus 81 -----------------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 81 -----------------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp -----------------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred -----------------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 667777777776666667777777777777777
Q ss_pred CcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 842 FSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
+++.+|..++.+++|+.|+|++|.+++..|
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777777777777777777777777776654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.7e-15 Score=148.07 Aligned_cols=88 Identities=25% Similarity=0.228 Sum_probs=58.2
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCccc-CchhhccCCCCCEEECcCCcccccCC---CCCCCCCCCCEE
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR-IPENIGAMALLESLDFSSNRLEGEIP---KNTVNLVFLSHF 883 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~Ls~N~l~g~iP---~~l~~l~~L~~l 883 (960)
|+.|+|++|++++.+|..++.+++|+.|+|++|++++. .+..++.+++|+.|++++|++++..+ ..+..++.|++|
T Consensus 73 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 152 (168)
T 2ell_A 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152 (168)
T ss_dssp CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence 36677777777666666666677777777777777653 22566777777777777777775444 356667777777
Q ss_pred EcccCcceecCCC
Q 035852 884 NISYNNLSGEVPD 896 (960)
Q Consensus 884 ~ls~N~l~g~iP~ 896 (960)
++++|.+. ++|.
T Consensus 153 ~l~~n~~~-~~~~ 164 (168)
T 2ell_A 153 DGYDREDQ-EAPD 164 (168)
T ss_dssp TTEETTSC-BCCS
T ss_pred cCCCCChh-hccc
Confidence 77777665 3443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=3.1e-15 Score=146.20 Aligned_cols=137 Identities=21% Similarity=0.228 Sum_probs=78.8
Q ss_pred CCCcEEecCCCccc-ccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhc
Q 035852 680 TELETIDIGENEFS-GNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATF 758 (960)
Q Consensus 680 ~~L~~L~Ls~N~l~-g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~ 758 (960)
++|++|++++|+++ +.+|..+. .+++|++|++++|.+++. ..+..+++|+.|++++|++++.+|..+.+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----- 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----
Confidence 34444444444444 34444332 345555555555554433 4455566666666666666655554433332
Q ss_pred cCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCccccc-Cchhhhhhcccceeec
Q 035852 759 LGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGE-IPAEITVLRELRSLNL 837 (960)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~L 837 (960)
+|+.|+|++|++++. .+..++.+++|+.|++
T Consensus 96 ------------------------------------------------~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 96 ------------------------------------------------NLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ------------------------------------------------TCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ------------------------------------------------CCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 236667777776642 1256677777777777
Q ss_pred CcccCcccCc---hhhccCCCCCEEECcCCcccccCCCC
Q 035852 838 SHNFFSGRIP---ENIGAMALLESLDFSSNRLEGEIPKN 873 (960)
Q Consensus 838 s~N~l~g~iP---~~l~~l~~L~~L~Ls~N~l~g~iP~~ 873 (960)
++|.+++..+ ..+..+++|+.||+++|.+. .+|..
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7777775544 36777777777777777776 45543
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=1.7e-15 Score=144.69 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=91.4
Q ss_pred Ccccceeeecccccc-ccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCCCcccccCCCCCCCCCCcccc
Q 035852 704 FPRMIILILRSNKFH-GVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSDSIYTIQYPSDFSFPGKFFNI 782 (960)
Q Consensus 704 l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (960)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|++++. ..++++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l------------------------------ 63 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL------------------------------ 63 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC------------------------------
Confidence 456777777777776 66666667777777777777777643 223222
Q ss_pred ccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccCccc-CchhhccCCCCCEEEC
Q 035852 783 TEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGR-IPENIGAMALLESLDF 861 (960)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L 861 (960)
++|+.|+|++|++++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++
T Consensus 64 -----------------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 64 -----------------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp -----------------------TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred -----------------------CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 2347788888888877777777788888888888888763 4477788888888888
Q ss_pred cCCcccccCC---CCCCCCCCCCEEEcc
Q 035852 862 SSNRLEGEIP---KNTVNLVFLSHFNIS 886 (960)
Q Consensus 862 s~N~l~g~iP---~~l~~l~~L~~l~ls 886 (960)
++|++++..| ..+..+++|++||++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888876555 467777788888776
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=142.74 Aligned_cols=86 Identities=29% Similarity=0.274 Sum_probs=68.5
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..+..+.++++|+.|++++
T Consensus 56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 36777888887776667788888888888888888877777788888888888888888865566678888888888888
Q ss_pred Ccceec
Q 035852 888 NNLSGE 893 (960)
Q Consensus 888 N~l~g~ 893 (960)
|++...
T Consensus 136 N~~~C~ 141 (193)
T 2wfh_A 136 NPLYCD 141 (193)
T ss_dssp SCEECS
T ss_pred CCeecC
Confidence 887653
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=2.3e-14 Score=141.23 Aligned_cols=89 Identities=20% Similarity=0.187 Sum_probs=68.1
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
|+.|++++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|++++..|..+.++++|++|++++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 36777777777755555567788888888888888876666678888888888888888865555567788888888888
Q ss_pred CcceecCCC
Q 035852 888 NNLSGEVPD 896 (960)
Q Consensus 888 N~l~g~iP~ 896 (960)
|++.|..|.
T Consensus 134 N~~~~~~~~ 142 (177)
T 2o6r_A 134 NPWDCSCPR 142 (177)
T ss_dssp SCBCCCHHH
T ss_pred CCeeccCcc
Confidence 888877663
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1e-14 Score=139.35 Aligned_cols=127 Identities=19% Similarity=0.171 Sum_probs=86.7
Q ss_pred CcccEEeccccccc-CCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 608 RLTQIINLEDNLLA-GEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 608 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
+.++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55667777777776 56666667777777777777777654 5667777777777777777766666666677777777
Q ss_pred cCCCccccc-CchHHhhcCcccceeeeccccccccCc---hhhcCCCCCCeEeec
Q 035852 687 IGENEFSGN-VPAWIGERFPRMIILILRSNKFHGVFP---LELCHLAFLKILVLA 737 (960)
Q Consensus 687 Ls~N~l~g~-ip~~~~~~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls 737 (960)
+++|++++. .|..+. .+++|++|++++|++++..+ ..+..+++|+.||++
T Consensus 95 ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777642 224444 57777777777777776555 456667777777765
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1.1e-14 Score=159.14 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=27.9
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN 665 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 665 (960)
|++|+.+++.+ .++..-+.+|.+|++|+.+++++|.+....+.+|..+.++..+.+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 45555555555 44444444455555555555555555444444454444444444433
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=3.9e-16 Score=157.12 Aligned_cols=147 Identities=22% Similarity=0.275 Sum_probs=97.5
Q ss_pred CCCCcEEecCCCcccccCch------HHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCcccccc
Q 035852 679 CTELETIDIGENEFSGNVPA------WIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNF 752 (960)
Q Consensus 679 l~~L~~L~Ls~N~l~g~ip~------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l 752 (960)
...++.++++.+.++|.+|. .+. .+++|++|++++|++++ +| .+..+++|+.|++++|+++ .+|..+..
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~- 91 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV- 91 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred cccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence 34444455555555554443 554 56777777777777765 55 6667777777777777776 44443322
Q ss_pred ccchhccCCCCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhccc
Q 035852 753 TAMATFLGSDSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLREL 832 (960)
Q Consensus 753 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L 832 (960)
+++|+.|+|++|++++ +| .++.+++|
T Consensus 92 ----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 92 ----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp ----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred ----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 2334778888888875 45 67788888
Q ss_pred ceeecCcccCcccCc-hhhccCCCCCEEECcCCcccccCCCC----------CCCCCCCCEEE
Q 035852 833 RSLNLSHNFFSGRIP-ENIGAMALLESLDFSSNRLEGEIPKN----------TVNLVFLSHFN 884 (960)
Q Consensus 833 ~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~g~iP~~----------l~~l~~L~~l~ 884 (960)
+.|+|++|++++..+ +.++.+++|+.|++++|++++.+|.. +..++.|+.||
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 888888888875322 46777888888888888888777764 66677777776
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=142.13 Aligned_cols=129 Identities=24% Similarity=0.290 Sum_probs=94.3
Q ss_pred cEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCCC
Q 035852 683 ETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGSD 762 (960)
Q Consensus 683 ~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~~ 762 (960)
+++++++|+++ .+|..+ .++|++|++++|+++ .+|..+..+++|+.|++++|++++..|..|.+++.|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 45666666665 555443 245666666666666 555667777788888888888876655555554443
Q ss_pred CcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCcccC
Q 035852 763 SIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFF 842 (960)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 842 (960)
+.|+|++|+|++..|..|+.+++|+.|+|++|++
T Consensus 81 ----------------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 81 ----------------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp ----------------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred ----------------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 7888888888877777888888899999999999
Q ss_pred cccCchhhccCCCCCEEECcCCccccc
Q 035852 843 SGRIPENIGAMALLESLDFSSNRLEGE 869 (960)
Q Consensus 843 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~ 869 (960)
++..+..|..+++|+.|+|++|.+.+.
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 115 SVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CeeChhhhhcCccccEEEeCCCCeecC
Confidence 876666788899999999999988753
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=3.3e-14 Score=140.12 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=96.3
Q ss_pred CcEEecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccCccccccccchhccCC
Q 035852 682 LETIDIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIPTCISNFTAMATFLGS 761 (960)
Q Consensus 682 L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~l~~l~~~~~~ 761 (960)
.+.+++++|+++ .+|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..|..+..++.
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------- 77 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK------- 77 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-------
Confidence 356666666665 455433 356777777777777665666677788888888888887544444444333
Q ss_pred CCcccccCCCCCCCCCCccccccccccceEEEecccchhhhhhhccccEEEccCCcccccCchhhhhhcccceeecCccc
Q 035852 762 DSIYTIQYPSDFSFPGKFFNITEQFVEEELITLEGKTLTFKAVLRLLTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNF 841 (960)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 841 (960)
|+.|+|++|++++..|..++.+++|+.|+|++|+
T Consensus 78 ----------------------------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 111 (177)
T 2o6r_A 78 ----------------------------------------------LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111 (177)
T ss_dssp ----------------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------------------------------------cCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence 4788888888887666677888889999999998
Q ss_pred CcccCchhhccCCCCCEEECcCCcccccCC
Q 035852 842 FSGRIPENIGAMALLESLDFSSNRLEGEIP 871 (960)
Q Consensus 842 l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP 871 (960)
+++..+..+..+++|+.|+|++|++++..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 886655556888899999999998887665
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.7e-14 Score=157.72 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=54.3
Q ss_pred CCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc-EEecCCCcccccCchHHhhcCcccce
Q 035852 631 WRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE-TIDIGENEFSGNVPAWIGERFPRMII 709 (960)
Q Consensus 631 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~l~~L~~ 709 (960)
+++|+.+++++|+++...+.+|.++++|+.++|.+| ++..-+.+|.+|++|+ .+++.+ .++ .|+...+.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 445555555555555443444555555555555555 4434444555555555 555555 443 344444445555555
Q ss_pred eeeccccccccCchhhcCCCCCCeEe
Q 035852 710 LILRSNKFHGVFPLELCHLAFLKILV 735 (960)
Q Consensus 710 L~L~~N~l~~~~p~~l~~l~~L~~L~ 735 (960)
+++++|+++..-+..|.++++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 55555555555455555666665554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=8e-16 Score=154.81 Aligned_cols=58 Identities=26% Similarity=0.309 Sum_probs=34.4
Q ss_pred ccEEEccCCcccccCc-hhhhhhcccceeecCcccCcccCchh----------hccCCCCCEEECcCCccc
Q 035852 808 LTNIDLSNNKFSGEIP-AEITVLRELRSLNLSHNFFSGRIPEN----------IGAMALLESLDFSSNRLE 867 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~----------l~~l~~L~~L~Ls~N~l~ 867 (960)
|+.|++++|++++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| .|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 3556666666653211 35666666666666666666665543 66777777766 45544
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.2e-13 Score=136.02 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=36.9
Q ss_pred cEEEccCCcccccCchhhhhhcccceeecCcccCcccCch--hhccCCCCCEEECcCCcccccCCCC----CCCCCCCCE
Q 035852 809 TNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPE--NIGAMALLESLDFSSNRLEGEIPKN----TVNLVFLSH 882 (960)
Q Consensus 809 ~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~Ls~N~l~g~iP~~----l~~l~~L~~ 882 (960)
+.|+|++|++++..|..++.+++|+.|+|++|+++ .+|. .++.+++|+.|++++|+++ .+|.. +..++.|+.
T Consensus 67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 44444444444322222344445555555555543 3333 4445555555555555554 33432 444555555
Q ss_pred EEcccCcc
Q 035852 883 FNISYNNL 890 (960)
Q Consensus 883 l~ls~N~l 890 (960)
||++.|..
T Consensus 145 Ld~~~n~~ 152 (176)
T 1a9n_A 145 LDFQKVKL 152 (176)
T ss_dssp ETTEECCH
T ss_pred eCCCcCCH
Confidence 55555544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.40 E-value=7.3e-12 Score=139.70 Aligned_cols=261 Identities=12% Similarity=0.157 Sum_probs=144.5
Q ss_pred CCCCEEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEe
Q 035852 214 RSLLVLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLD 293 (960)
Q Consensus 214 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 293 (960)
..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ ..-...|.+ .+|+.+.+.. .+...-+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4445555443 3445555566654 5666666655 33 333344544 3566666664 44444455666677777777
Q ss_pred CCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccC
Q 035852 294 LSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLS 373 (960)
Q Consensus 294 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 373 (960)
++.|.++......|. +.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++..-..+|.. ++|
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L----------- 250 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI----------- 250 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC-----------
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc-----------
Confidence 776666655444554 466777766543 33 455456666666666666653 33233334443 344
Q ss_pred CcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCC-----CCCcccccCCCCCcEEecCCc
Q 035852 374 HQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSIS-----GQVPWSLGKLSSLRYLDISNN 448 (960)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n 448 (960)
+.+.+. +.++..-...|.++++|+.+++.++.+. ..-+..|.+|++|+.+++.+
T Consensus 251 -------------------~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 251 -------------------TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp -------------------SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred -------------------cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 334442 2233233445666777777777666543 23345566677777777763
Q ss_pred ccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCc-cCcEEeccC
Q 035852 449 QLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQN-HLVNLDISD 520 (960)
Q Consensus 449 ~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~Ls~ 520 (960)
.+. .++...|.++++|+.+.+..+ ++.+...+|..+ +|+.+.+.++......+..|.+++ .++.|.+..
T Consensus 310 ~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 343 555666777777777777543 555555666666 666666666655444444444442 444444443
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=5.2e-13 Score=131.33 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=102.0
Q ss_pred CCCCcccEEecccccccCCCCCcccCCC-cccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCc
Q 035852 605 NGTRLTQIINLEDNLLAGEIPDCWMNWR-YLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELE 683 (960)
Q Consensus 605 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 683 (960)
.++..++.|++++|+++. +|. +..+. +|++|++++|.+++. ..++.+++|++|++++|++++..|..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 446778888888888874 454 44444 899999999988865 5788888999999999998865444458888999
Q ss_pred EEecCCCcccccCch--HHhhcCcccceeeeccccccccCch----hhcCCCCCCeEeecCCcCc
Q 035852 684 TIDIGENEFSGNVPA--WIGERFPRMIILILRSNKFHGVFPL----ELCHLAFLKILVLAGNNLS 742 (960)
Q Consensus 684 ~L~Ls~N~l~g~ip~--~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~ 742 (960)
+|++++|+++ .+|. .+. .+++|+.|++++|+++. +|. .+..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999886 5775 554 68889999999998874 455 3788899999999888764
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=8.2e-13 Score=128.83 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=80.3
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
++.|+|++|+|++..|..++.+++|+.|||++|++++..|..|+.+++|+.|+|++|++++..|..+.++++|++|++++
T Consensus 32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence 48899999999988899999999999999999999987777789999999999999999987777899999999999999
Q ss_pred CcceecCCC
Q 035852 888 NNLSGEVPD 896 (960)
Q Consensus 888 N~l~g~iP~ 896 (960)
|++.+..+.
T Consensus 112 N~~~c~c~~ 120 (170)
T 3g39_A 112 NPWDCACSD 120 (170)
T ss_dssp SCBCTTBGG
T ss_pred CCCCCCchh
Confidence 999876553
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=1.4e-11 Score=137.43 Aligned_cols=219 Identities=14% Similarity=0.186 Sum_probs=110.6
Q ss_pred CCCEEeCCCCcccCCchhhhcCCCCCcEEeCCCCCCCCCccCCcccccCCCccceeecCCCCCCCCCCCcccccCCCCCC
Q 035852 138 NLRFLDLSGAGFVGMIPNQIGNLSNLQYLNLRPNYLGGLYVEDLGWLYDLSLLENLDLSGVDLSKVSNGPLVTNALRSLL 217 (960)
Q Consensus 138 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~i~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 217 (960)
+|+.+++..+ +...-..+|.++ +|+.+.+.. .+..+... .+.++++|+.++++.|.++.++..... +.+|+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~---aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~ 206 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKED---IFYYCYNLKKADLSKTKITKLPASTFV---YAGIE 206 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSS---TTTTCTTCCEEECTTSCCSEECTTTTT---TCCCS
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHH---HhhCcccCCeeecCCCcceEechhhEe---ecccC
Confidence 4555555443 333333344443 455555543 22222111 244555555555555555544332221 35566
Q ss_pred EEEccCCcCCCCCCCCccCCCCCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcccCCCCcccccCCCCCCEEeCCCC
Q 035852 218 VLQLAGCQLSHFPPLSVANFSSLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNNFQGPIPDTIQNWTSLRHLDLSSN 297 (960)
Q Consensus 218 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 297 (960)
.+.+.. .++.+...+|.++++|+.+++..+ ++ ..-...|.+ .+|+.+.+. +.++..-..+|.+|++|+.+++.++
T Consensus 207 ~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 207 EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred EEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 666653 255555556666666666666553 22 222334444 556666663 3344334455666666666666555
Q ss_pred cCC-----CcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCccc
Q 035852 298 HFS-----YLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQL 372 (960)
Q Consensus 298 ~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 372 (960)
.+. ...+..|..|++|+.+++.+ .++ .++...|.+|++|+.+++..+ ++..-..+|.++ +|+.+++.+|.+
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 443 23345566666666666653 343 444455666666666666443 443444456666 666666666654
Q ss_pred CC
Q 035852 373 SH 374 (960)
Q Consensus 373 ~~ 374 (960)
..
T Consensus 358 ~~ 359 (401)
T 4fdw_A 358 PQ 359 (401)
T ss_dssp CB
T ss_pred cc
Confidence 43
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.6e-12 Score=125.71 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=77.5
Q ss_pred ccEEEccCCcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
|+.|+|++|+|++.+|..++++++|+.|+|++|+|++..|..|+.+++|+.|||++|++++..|..+.++++|++|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 48899999999988899999999999999999999986666678999999999999999976666699999999999999
Q ss_pred CcceecCC
Q 035852 888 NNLSGEVP 895 (960)
Q Consensus 888 N~l~g~iP 895 (960)
|++....+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 99886433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=4.5e-12 Score=123.56 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=72.2
Q ss_pred ccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeec
Q 035852 634 LLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILR 713 (960)
Q Consensus 634 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~ 713 (960)
.+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...+..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 455666666665 4555442 56677777777776666666777777777777777776 3444443367777777777
Q ss_pred cccccccCchhhcCCCCCCeEeecCCcCccccC
Q 035852 714 SNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP 746 (960)
Q Consensus 714 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 746 (960)
+|++++..+..+..+++|+.|++++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777776666667777888888888888775443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.31 E-value=2.3e-11 Score=136.33 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=109.8
Q ss_pred hhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCcccccccccCCCCCEEEcCCcccCCcchhhHHHhhc
Q 035852 306 WLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSRFCNLRSISLSGIQLSHQKVSQVLAIFS 385 (960)
Q Consensus 306 ~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 385 (960)
+|.++++|+.+.+.++.. .++...|.++++|+.+++..+ ++......|.++..|+.+.+..+....... .
T Consensus 157 aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~------~- 226 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDF------A- 226 (394)
T ss_dssp TTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTT------T-
T ss_pred hhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehh------h-
Confidence 344555555555543321 233344455555555555443 222223344455555444443322110000 0
Q ss_pred cCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCCCCcEEecCCcccccccchhhhcCCCCC
Q 035852 386 GCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQLNGTVSEIHFANLSSL 465 (960)
Q Consensus 386 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 465 (960)
.....|+.+.+.... +......+..+..++.+.+..+... .....+..+..++.+....+. ++...|..+.+|
T Consensus 227 -~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L 299 (394)
T 4fs7_A 227 -LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSL 299 (394)
T ss_dssp -TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTC
T ss_pred -cccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccc
Confidence 001224555444321 2122234556667777776655332 334456666667766665542 344466677777
Q ss_pred cEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccC
Q 035852 466 TFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSN 545 (960)
Q Consensus 466 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~ 545 (960)
+.+.+..+ ++.+...+|..+.+|+.+++... +...-..+|.+|.+|+.+++..+ ...++...|..|++|+.+++..
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 77776543 55555666666666666666432 33334455666666666666554 3445555566666666666654
Q ss_pred c
Q 035852 546 N 546 (960)
Q Consensus 546 n 546 (960)
+
T Consensus 376 ~ 376 (394)
T 4fs7_A 376 R 376 (394)
T ss_dssp G
T ss_pred C
Confidence 3
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=4e-11 Score=134.43 Aligned_cols=331 Identities=13% Similarity=0.108 Sum_probs=168.2
Q ss_pred CcccccCCCCCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCccccccccHHHHhcCCCCCEEeCCCCCCCccccccccc
Q 035852 279 IPDTIQNWTSLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNRLQGRISSVLLENLSSIQSLDLSFNELEWKIPRSFSR 358 (960)
Q Consensus 279 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 358 (960)
-..+|.++++|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...+.++++|+.+.+..+ +......+|..
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeec
Confidence 3445666667777766533 44444455666666666666543 32 344345555555555444332 11122222322
Q ss_pred CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCchhhhhcCCCCCCEEecCCCcCCCCCcccccCCC
Q 035852 359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSLTNQIGKFKVLNSVDLSENSISGQVPWSLGKLS 438 (960)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 438 (960)
+.. ..+.+.. .........|.++++|+.+.+.++. ...-...|.+++
T Consensus 139 ~~~-------------------------------~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~ 185 (394)
T 4fs7_A 139 CDF-------------------------------KEITIPE-GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCG 185 (394)
T ss_dssp CCC-------------------------------SEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT
T ss_pred ccc-------------------------------cccccCc-cccccchhhhcccCCCcEEecCCcc-ceeccccccCCC
Confidence 211 1111111 1111122345566666666665442 223334455566
Q ss_pred CCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCccCcEEec
Q 035852 439 SLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNHLVNLDI 518 (960)
Q Consensus 439 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~L 518 (960)
+|+.+++..+ +. .+....|.++..|+.+.+..+.... .........|+.+.+
T Consensus 186 ~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i--------------------------~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 186 KLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYL--------------------------GDFALSKTGVKNIII 237 (394)
T ss_dssp TCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEE--------------------------CTTTTTTCCCCEEEE
T ss_pred CceEEEcCCC-ce-EeCchhhccccccceeecCCCceEe--------------------------ehhhcccCCCceEEE
Confidence 6666666554 22 3444455666666555554432211 111122334444444
Q ss_pred cCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCcCCCCCCCccCcEEEcccccccccccc
Q 035852 519 SDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLSGQLPLLASNVMVLDLSKNKLSGSILH 598 (960)
Q Consensus 519 s~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~ 598 (960)
.+.- ..+....+..+..++.+.+..+...-....+..+..++.+....+.+.
T Consensus 238 p~~~--~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~-------------------------- 289 (394)
T 4fs7_A 238 PDSF--TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP-------------------------- 289 (394)
T ss_dssp CTTC--CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--------------------------
T ss_pred CCCc--eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--------------------------
Confidence 3221 223333344455555555554433211123444444444433322111
Q ss_pred hhhcccCCCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcC
Q 035852 599 FVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGN 678 (960)
Q Consensus 599 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 678 (960)
...+.++.+|+.+.+.++ +...-..+|.+|.+|+.+++.++ ++..-..+|.+|.+|+.+++..+ ++..-..+|.+
T Consensus 290 --~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp --TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred --cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence 112345667777776544 44444567888888888888754 55455667888888888888776 65555678888
Q ss_pred CCCCcEEecCCCcccccCchHHhhcCccccee
Q 035852 679 CTELETIDIGENEFSGNVPAWIGERFPRMIIL 710 (960)
Q Consensus 679 l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L 710 (960)
|++|+.+++..+ +. .+... +.++++|+.+
T Consensus 365 C~~L~~i~lp~~-~~-~~~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKR-LE-QYRYD-FEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGG-GG-GGGGG-BCTTCEEEEE
T ss_pred CCCCCEEEECCC-CE-Ehhhe-ecCCCCCcEE
Confidence 888998888765 22 33333 3367777653
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.29 E-value=9.6e-12 Score=121.60 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=69.9
Q ss_pred cEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecc
Q 035852 635 LVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRS 714 (960)
Q Consensus 635 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~ 714 (960)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++ +|...+..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence 45666666664 5555543 566677777777766666666677777777777777763 5544433567777777777
Q ss_pred ccccccCchhhcCCCCCCeEeecCCcCcc
Q 035852 715 NKFHGVFPLELCHLAFLKILVLAGNNLSG 743 (960)
Q Consensus 715 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 743 (960)
|++++..+..+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 77775555557777888888888888764
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=7.1e-13 Score=146.45 Aligned_cols=62 Identities=24% Similarity=0.311 Sum_probs=32.9
Q ss_pred ccEEEccCCccccc----CchhhhhhcccceeecCcccCccc----CchhhccCCCCCEEECcCCccccc
Q 035852 808 LTNIDLSNNKFSGE----IPAEITVLRELRSLNLSHNFFSGR----IPENIGAMALLESLDFSSNRLEGE 869 (960)
Q Consensus 808 L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g~ 869 (960)
|++|||++|++++. +++.+...+.|+.|||++|.+++. +++.+...+.|+.|||++|.++..
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 45555555555432 234444555566666666666542 333344455666666666666543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=8.6e-11 Score=129.41 Aligned_cols=83 Identities=24% Similarity=0.211 Sum_probs=54.4
Q ss_pred cEEEccC-CcccccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEccc
Q 035852 809 TNIDLSN-NKFSGEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNISY 887 (960)
Q Consensus 809 ~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls~ 887 (960)
+.|+|++ |+|++..|..|++|++|+.|||++|+|++..|..|+++++|+.|||++|+|++..|..+..+. |+.|++++
T Consensus 34 ~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCS
T ss_pred eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeC
Confidence 6667764 666666666666777777777777777766666667777777777777777654444444444 77777777
Q ss_pred Cccee
Q 035852 888 NNLSG 892 (960)
Q Consensus 888 N~l~g 892 (960)
|++..
T Consensus 113 N~~~c 117 (347)
T 2ifg_A 113 NPLHC 117 (347)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=2.2e-11 Score=134.46 Aligned_cols=114 Identities=20% Similarity=0.164 Sum_probs=54.2
Q ss_pred CCCCEEeccCcccCCCCcccccC-----CCCCCEEeCCCCcCCCcchhhh-cCCCCCCEEeeeCccccccccHHHH----
Q 035852 263 CNLVFLDLSDNNFQGPIPDTIQN-----WTSLRHLDLSSNHFSYLIPEWL-NKFSRLEYLSLSSNRLQGRISSVLL---- 332 (960)
Q Consensus 263 ~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~l---- 332 (960)
+.|++|++++|.++......+.. .++|++|+|++|.++......+ ..+++|+.|+|++|.++.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHHHHH
Confidence 45667777777665432222221 2566666666666554322222 223456666666666543221 222
Q ss_pred -hcCCCCCEEeCCCCCCCcc----cccccccCCCCCEEEcCCcccCCcch
Q 035852 333 -ENLSSIQSLDLSFNELEWK----IPRSFSRFCNLRSISLSGIQLSHQKV 377 (960)
Q Consensus 333 -~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~ 377 (960)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~ 200 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL 200 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH
Confidence 1234555555555555421 22233444555555555554444333
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=4.3e-09 Score=117.79 Aligned_cols=304 Identities=14% Similarity=0.172 Sum_probs=132.0
Q ss_pred CCEEecCCCcCCCCCcccccCCCCCcEEecCCcc---cccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEE
Q 035852 416 LNSVDLSENSISGQVPWSLGKLSSLRYLDISNNQ---LNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEEL 492 (960)
Q Consensus 416 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 492 (960)
|+.+.+-.+ ++..-..+|.++++|+.+.+..|. ++ .+...+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555555432 332333445555555555554442 22 344445555555555554432 344444455555555555
Q ss_pred ecccccCCCCCCcccccCccCcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccCcCc
Q 035852 493 DLRSCYLGPPFPSWLHSQNHLVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSANNLS 572 (960)
Q Consensus 493 ~l~~~~l~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 572 (960)
.+... +.......+..+..|+.+.+.++ ...+....|.. ..|+.+.+..+...-....+..+..++......+...
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccc
Confidence 55432 22222334555556666555443 22333333332 3455555544332222223444555555544433222
Q ss_pred CCCCCCC----------------ccCcEEEcccccccccccchhhcccCCCCcccEEecccccccCCCCCcccCCCcccE
Q 035852 573 GQLPLLA----------------SNVMVLDLSKNKLSGSILHFVCHETNGTRLTQIINLEDNLLAGEIPDCWMNWRYLLV 636 (960)
Q Consensus 573 ~~~p~~~----------------~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 636 (960)
....... ..+..+.+.. .+...-...+.+|..|+.+.+.++... .-..+|.++++|+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-----~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~ 292 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-----GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQD 292 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-----TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCE
T ss_pred cccceeecccccccccccccccccccceEEcCC-----cceEcccceeeecccccEEecccccce-ecCccccccccccc
Confidence 1100000 0011111100 000111223445566666655443221 23345555666666
Q ss_pred EECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHhhcCcccceeeecccc
Q 035852 637 LRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIGERFPRMIILILRSNK 716 (960)
Q Consensus 637 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~ 716 (960)
+.+.. .++..-..+|.++.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++ .|+...+.++++|+.+++.++.
T Consensus 293 i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 293 IEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred ccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 66642 333333445566666666666543 33333445666666666666443 33 4555555456666666665554
Q ss_pred ccccCchhhcCCCCCCeEeecCC
Q 035852 717 FHGVFPLELCHLAFLKILVLAGN 739 (960)
Q Consensus 717 l~~~~p~~l~~l~~L~~L~Ls~N 739 (960)
... ..+....+|+.+.+..|
T Consensus 369 ~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 369 SQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp HHH---HTCBCCCCC--------
T ss_pred eeh---hhhhccCCCCEEEeCCC
Confidence 321 23444555555555444
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.05 E-value=1.9e-10 Score=126.57 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=91.2
Q ss_pred cEEEccCC-cccccCchhhhhhcccceeecCc-ccCcccCchhhccCCCCCEEECcCCcccccCCCCCCCCCCCCEEEcc
Q 035852 809 TNIDLSNN-KFSGEIPAEITVLRELRSLNLSH-NFFSGRIPENIGAMALLESLDFSSNRLEGEIPKNTVNLVFLSHFNIS 886 (960)
Q Consensus 809 ~~L~Ls~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~l~ls 886 (960)
..++++++ +|+ .||. +..+++|+.|+|++ |+|++..|..|+.+++|+.|||++|+|+|.+|..+++|++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 46799998 898 6998 99999999999996 99999888999999999999999999999999999999999999999
Q ss_pred cCcceecCCCCcccCCCCccccCCCCCccCc
Q 035852 887 YNNLSGEVPDEAQFATFDSSSYIGDEYLCGP 917 (960)
Q Consensus 887 ~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~ 917 (960)
+|+|++..|.......+....+.+|+.-|..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSC 119 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCC
Confidence 9999964443333223555567788877754
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.05 E-value=4.6e-09 Score=117.60 Aligned_cols=129 Identities=16% Similarity=0.220 Sum_probs=61.7
Q ss_pred cccCCCCCcEEecCCcccccccchhhhcCCCCCcEeeccCccccccCCCCCcccccceEEecccccCCCCCCcccccCcc
Q 035852 433 SLGKLSSLRYLDISNNQLNGTVSEIHFANLSSLTFFYASRNSLTLKANPNWVPVFQLEELDLRSCYLGPPFPSWLHSQNH 512 (960)
Q Consensus 433 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 512 (960)
.|..++.|+.+.+..+.. .+....|.++++|+.+.+. +.++.+...+|..+.+|+.+.+..+ +...-..+|.+|.+
T Consensus 260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 344444555555443322 2333445555555555553 2344444445555555555555432 33333445666666
Q ss_pred CcEEeccCCCCcCCCchhHhhcCCcccEEEccCccccccCCCccccCCCCeEEcccC
Q 035852 513 LVNLDISDSGIVDTIPNRFWKSITQFNYLSLSNNQIHGEIPNLTEVSQLGTLDLSAN 569 (960)
Q Consensus 513 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n 569 (960)
|+.+.+..+ ...+....|..|++|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC--------
T ss_pred CCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCC
Confidence 666666543 345666666777777777776654321 13444455555555444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=6.1e-09 Score=113.80 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=27.8
Q ss_pred cCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCcccccCchHHh-hcCcccceeeec
Q 035852 652 LGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFSGNVPAWIG-ERFPRMIILILR 713 (960)
Q Consensus 652 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~~l~~L~~L~L~ 713 (960)
+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+....-..+. ..+|+|+.|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 345566666666665211 1222 22 55666666666555432222222 134555555543
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=2.1e-08 Score=109.60 Aligned_cols=103 Identities=16% Similarity=0.164 Sum_probs=50.4
Q ss_pred CCCcEEeCCCCCCC-CC------hhHHhhcCCCCCCEEeccCcccC---------CCCcccccCCCCCCEEeCCCCcCCC
Q 035852 238 SSLVTLDLSHNQFD-NS------LIATQLYGLCNLVFLDLSDNNFQ---------GPIPDTIQNWTSLRHLDLSSNHFSY 301 (960)
Q Consensus 238 ~~L~~L~Ls~n~l~-~~------~~~~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~ 301 (960)
..++.|.+....+. +. .+..++..+++|+.|.+...... +.+...+..+++|+.|+|++|.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 34666766654443 01 12233445677888877654321 1233444556666666666552111
Q ss_pred cchhhhcCCCCCCEEeeeCccccccccHHHHh--cCCCCCEEeCC
Q 035852 302 LIPEWLNKFSRLEYLSLSSNRLQGRISSVLLE--NLSSIQSLDLS 344 (960)
Q Consensus 302 ~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~--~l~~L~~L~Ls 344 (960)
++. + .+++|+.|++..+.+..... ..+. .+++|++|+|+
T Consensus 187 -l~~-~-~~~~L~~L~L~~~~l~~~~l-~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 187 -IGK-K-PRPNLKSLEIISGGLPDSVV-EDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -CCS-C-BCTTCSEEEEECSBCCHHHH-HHHHHSBCTTCCEEEEE
T ss_pred -ecc-c-cCCCCcEEEEecCCCChHHH-HHHHHccCCCCcEEEEe
Confidence 122 2 25566666666655543221 2222 45666666654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=1.4e-06 Score=96.80 Aligned_cols=128 Identities=9% Similarity=0.088 Sum_probs=67.5
Q ss_pred CCCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEE
Q 035852 606 GTRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETI 685 (960)
Q Consensus 606 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 685 (960)
.+..++.+.+..+ +......++.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..+ +...-...|.+|++|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3445555554433 22223345555666666666554 33333445566666666666443 332334456666666666
Q ss_pred ecCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecC
Q 035852 686 DIGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAG 738 (960)
Q Consensus 686 ~Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 738 (960)
++.++.++ .|+...+.++++|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus 292 ~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 292 VMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66666555 455544445666666666543 3333344566666666665543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.49 E-value=7e-06 Score=91.06 Aligned_cols=145 Identities=14% Similarity=0.192 Sum_probs=107.6
Q ss_pred CCcccEEecccccccCCCCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEe
Q 035852 607 TRLTQIINLEDNLLAGEIPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETID 686 (960)
Q Consensus 607 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 686 (960)
+..+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ ++..-...|.++.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 3444444443322 2234456777889999999766 44355667889999999999876 5545667899999999999
Q ss_pred cCCCcccccCchHHhhcCcccceeeeccccccccCchhhcCCCCCCeEeecCCcCccccC-ccccccccchhc
Q 035852 687 IGENEFSGNVPAWIGERFPRMIILILRSNKFHGVFPLELCHLAFLKILVLAGNNLSGTIP-TCISNFTAMATF 758 (960)
Q Consensus 687 Ls~N~l~g~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~~l~~~ 758 (960)
+..+ +. .++...+..+++|+.+.+.++.++..-...|.++.+|+.+++..+ ++ .|+ .+|.++++|+.+
T Consensus 270 l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 270 FYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTI 338 (379)
T ss_dssp ECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCC
T ss_pred cccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEE
Confidence 9765 44 577777778999999999999888777788999999999999765 44 444 477788877544
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=2.5e-07 Score=95.52 Aligned_cols=65 Identities=25% Similarity=0.339 Sum_probs=35.6
Q ss_pred hccccEEEccCCcccc--cCchhhhhhcccceeecCcccCcccCchhhccCC--CCCEEECcCCcccccCC
Q 035852 805 LRLLTNIDLSNNKFSG--EIPAEITVLRELRSLNLSHNFFSGRIPENIGAMA--LLESLDFSSNRLEGEIP 871 (960)
Q Consensus 805 ~~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~Ls~N~l~g~iP 871 (960)
++.|+.|+||+|+|++ .+|..++.+++|+.||||+|++++. +.+..+. +|+.|+|++|.+++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4555666666666655 4445555566666666666666543 2333333 55555555555555544
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.3e-07 Score=97.63 Aligned_cols=51 Identities=25% Similarity=0.339 Sum_probs=30.9
Q ss_pred ccEEEccCCcccccCchhhhhhc--ccceeecCcccCcccCch-------hhccCCCCCEEE
Q 035852 808 LTNIDLSNNKFSGEIPAEITVLR--ELRSLNLSHNFFSGRIPE-------NIGAMALLESLD 860 (960)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~~l~~L~~L~ 860 (960)
|+.|||++|+|++. .++..++ .|+.|+|++|.+++.+|+ .+..+++|+.||
T Consensus 198 L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 198 LKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 45666666666643 3344444 667777777777665552 356677777665
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=6.8e-07 Score=87.87 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=8.5
Q ss_pred ccCCCCCEEEcCCcccC
Q 035852 357 SRFCNLRSISLSGIQLS 373 (960)
Q Consensus 357 ~~l~~L~~L~L~~n~l~ 373 (960)
...++|++|++++|.+.
T Consensus 148 ~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 148 EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEeccCCCCC
Confidence 33445555555555544
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.5e-06 Score=85.48 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=40.2
Q ss_pred CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCc----hhhhhcCCCCCCEEec--CCCcCCCC---
Q 035852 359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGS----LTNQIGKFKVLNSVDL--SENSISGQ--- 429 (960)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~--- 429 (960)
.++|++|+|++|.+.+.....+...+.. .+.|++|+|++|.++.. +...+...+.|++|++ ++|.+...
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKV--NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHH--CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHh--CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3444444444444444333333333221 12244444444444432 2333444455666666 55555533
Q ss_pred -CcccccCCCCCcEEecCCccc
Q 035852 430 -VPWSLGKLSSLRYLDISNNQL 450 (960)
Q Consensus 430 -~p~~l~~l~~L~~L~L~~n~l 450 (960)
+...+...++|++|++++|.+
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCcCEEeccCCCC
Confidence 222333445566666666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=2.5e-05 Score=74.48 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=42.2
Q ss_pred CCcEEeCCCCCCCCChhHHhhcCCCCCCEEeccCcc-cCCCCcccccCC----CCCCEEeCCCCc-CCCcchhhhcCCCC
Q 035852 239 SLVTLDLSHNQFDNSLIATQLYGLCNLVFLDLSDNN-FQGPIPDTIQNW----TSLRHLDLSSNH-FSYLIPEWLNKFSR 312 (960)
Q Consensus 239 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 312 (960)
.|++||++++.++ ..-...+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+.++++
T Consensus 62 ~L~~LDLs~~~It-d~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIM-SIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCC-GGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCcc-HHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4666666666665 3333444566666666666663 443222233332 245555555553 44433334455555
Q ss_pred CCEEeeeCcc
Q 035852 313 LEYLSLSSNR 322 (960)
Q Consensus 313 L~~L~L~~n~ 322 (960)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 5555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=5.3e-05 Score=72.28 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=41.6
Q ss_pred CCCEEeCCCCcCCCcchhhhcCCCCCCEEeeeCcc-ccccccHHHHhcC----CCCCEEeCCCCC-CCcccccccccCCC
Q 035852 288 SLRHLDLSSNHFSYLIPEWLNKFSRLEYLSLSSNR-LQGRISSVLLENL----SSIQSLDLSFNE-LEWKIPRSFSRFCN 361 (960)
Q Consensus 288 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 361 (960)
.|++||+++|.++..--..+..+++|++|+|++|. +++.-- ..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555555544433444555566666666653 332111 233332 356666666653 44433344555666
Q ss_pred CCEEEcCCc
Q 035852 362 LRSISLSGI 370 (960)
Q Consensus 362 L~~L~L~~n 370 (960)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666665
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.81 E-value=0.002 Score=62.60 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=37.1
Q ss_pred CCCcEEeCCCC-CCCCC---hhHHhhcCCCCCCEEeccCcccCCC----CcccccCCCCCCEEeCCCCcCCCcc----hh
Q 035852 238 SSLVTLDLSHN-QFDNS---LIATQLYGLCNLVFLDLSDNNFQGP----IPDTIQNWTSLRHLDLSSNHFSYLI----PE 305 (960)
Q Consensus 238 ~~L~~L~Ls~n-~l~~~---~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~----p~ 305 (960)
+.|++|+|++| .+.+. .+.+.+..-+.|++|+|++|++... +.+.+..-+.|++|+|++|.|...- .+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 44555555543 44311 1233444445555555555555422 2233334455555555555554321 12
Q ss_pred hhcCCCCCCEEeeeC
Q 035852 306 WLNKFSRLEYLSLSS 320 (960)
Q Consensus 306 ~l~~l~~L~~L~L~~ 320 (960)
.+..-+.|++|+|++
T Consensus 121 aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 121 STLVTQSIVEFKADN 135 (197)
T ss_dssp HTTTTCCCSEEECCC
T ss_pred HHhhCCceeEEECCC
Confidence 233334455555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.73 E-value=0.0018 Score=62.99 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=38.2
Q ss_pred CCCCCEEEcCCcccCCcchhhHHHhhccCCCCcccEEEcCCCCCCCch----hhhhcCCCCCCEEecCCC---cCCCC--
Q 035852 359 FCNLRSISLSGIQLSHQKVSQVLAIFSGCVSDVLESLDLSNTTLSGSL----TNQIGKFKVLNSVDLSEN---SISGQ-- 429 (960)
Q Consensus 359 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n---~l~~~-- 429 (960)
-+.|+.|+|++|.+.+.....+...+... ..|++|+|+.|.++... ...+..-+.|++|+|++| .+...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N--~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETS--PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHC--SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcC--CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 34444444444444444444444433321 22455555555544321 222333344555555543 22211
Q ss_pred --CcccccCCCCCcEEecCCcc
Q 035852 430 --VPWSLGKLSSLRYLDISNNQ 449 (960)
Q Consensus 430 --~p~~l~~l~~L~~L~L~~n~ 449 (960)
+...+..-+.|+.|+++.|.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhCCCcCeEeccCCC
Confidence 22334444556666665554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.07 E-value=0.0062 Score=55.18 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=35.5
Q ss_pred cEEEccCCccc-ccCchhhhhhcccceeecCcccCcccCchhhccCCCCCEEECcCCccc
Q 035852 809 TNIDLSNNKFS-GEIPAEITVLRELRSLNLSHNFFSGRIPENIGAMALLESLDFSSNRLE 867 (960)
Q Consensus 809 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 867 (960)
..+|.++++|+ ..+|..+. .+|+.|||++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777776 35554322 24667777777776544445566667777777766654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.025 Score=51.17 Aligned_cols=56 Identities=27% Similarity=0.354 Sum_probs=27.6
Q ss_pred EEECCCCccc-cCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecCCCccc
Q 035852 636 VLRLDNNKFT-GKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIGENEFS 693 (960)
Q Consensus 636 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 693 (960)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4444555443 23443321 34555555555555433444555555666666665543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=26.75 E-value=1.1e+02 Score=25.25 Aligned_cols=41 Identities=10% Similarity=0.021 Sum_probs=22.9
Q ss_pred CCCcccCCCcccEEECCCCccccCCCcCcCCCCCCcEEECCC
Q 035852 624 IPDCWMNWRYLLVLRLDNNKFTGKLPTSLGALSLLRSLHLRN 665 (960)
Q Consensus 624 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 665 (960)
-..+|.+|++|+.+.+-.+ ++..-..+|.+|.+|+.+.+.+
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3345666666666666554 3334444566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.57 E-value=68 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=21.8
Q ss_pred ccCCCcCcCCCCCCcEEECCCCeecccCCcCCcCCCCCcEEecC
Q 035852 645 TGKLPTSLGALSLLRSLHLRNNNLSGTLPVSLGNCTELETIDIG 688 (960)
Q Consensus 645 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 688 (960)
+..-..+|.+|.+|+.+.|-.+ ++..-..+|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3333445566666666655543 222333455555555555554
Done!