Query 035853
Match_columns 581
No_of_seqs 461 out of 4457
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-67 3E-72 577.4 21.3 522 2-539 248-865 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.7E-56 3.8E-61 516.0 30.0 515 6-556 287-904 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.9E-27 6.2E-32 273.3 18.9 321 223-556 69-415 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.5E-27 5.4E-32 273.8 17.1 314 223-556 118-463 (968)
5 PF00931 NB-ARC: NB-ARC domain 99.9 8.8E-28 1.9E-32 238.4 4.3 154 2-155 88-283 (287)
6 KOG0444 Cytoskeletal regulator 99.9 3.1E-28 6.7E-33 243.4 -7.5 313 221-556 53-373 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 1E-25 2.2E-30 225.4 -8.1 318 222-564 31-359 (1255)
8 KOG4194 Membrane glycoprotein 99.9 2.4E-23 5.2E-28 207.3 4.5 313 222-556 101-427 (873)
9 PLN03210 Resistant to P. syrin 99.9 4.6E-21 1E-25 222.3 19.4 294 244-556 531-880 (1153)
10 KOG4194 Membrane glycoprotein 99.8 3.4E-22 7.3E-27 199.2 0.5 321 221-563 123-463 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.1E-22 2.3E-27 194.5 -10.0 259 280-556 47-308 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 7.4E-22 1.6E-26 188.7 -10.2 246 271-532 61-308 (565)
13 KOG0618 Serine/threonine phosp 99.7 2.8E-20 6.1E-25 195.1 -5.2 297 246-556 46-487 (1081)
14 KOG0618 Serine/threonine phosp 99.7 1.2E-18 2.7E-23 182.9 -4.3 217 325-555 242-510 (1081)
15 PRK15370 E3 ubiquitin-protein 99.7 1.4E-16 2.9E-21 173.7 10.6 242 278-556 178-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 1.8E-15 3.9E-20 164.0 14.2 232 279-556 223-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 1.6E-15 3.4E-20 164.4 13.8 259 227-541 205-465 (788)
18 KOG0617 Ras suppressor protein 99.6 7.9E-18 1.7E-22 143.3 -5.6 128 276-403 31-160 (264)
19 PRK15370 E3 ubiquitin-protein 99.6 2E-15 4.4E-20 164.5 10.4 241 225-507 180-425 (754)
20 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 142.0 -6.5 166 239-418 26-195 (264)
21 cd00116 LRR_RI Leucine-rich re 99.5 3.5E-16 7.6E-21 157.8 -1.7 265 271-556 16-318 (319)
22 KOG4658 Apoptotic ATPase [Sign 99.5 1.7E-14 3.6E-19 159.9 7.9 200 239-461 516-730 (889)
23 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-15 6.9E-20 150.8 -0.8 255 244-532 22-318 (319)
24 KOG4237 Extracellular matrix p 99.3 3.8E-14 8.2E-19 136.2 -6.4 135 238-382 60-199 (498)
25 KOG4237 Extracellular matrix p 99.3 8.8E-14 1.9E-18 133.7 -5.1 253 279-532 68-357 (498)
26 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.9E-16 123.2 -3.5 175 271-459 91-271 (722)
27 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.3E-16 123.0 -4.1 167 281-461 78-247 (722)
28 COG4886 Leucine-rich repeat (L 99.0 4.5E-10 9.8E-15 116.7 5.4 179 272-485 110-290 (394)
29 COG4886 Leucine-rich repeat (L 99.0 8.9E-10 1.9E-14 114.5 6.5 170 244-428 115-286 (394)
30 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3.1E-15 113.4 0.5 230 298-556 118-365 (505)
31 KOG4341 F-box protein containi 98.9 3.2E-11 7E-16 117.3 -4.9 287 245-565 138-446 (483)
32 PF14580 LRR_9: Leucine-rich r 98.9 7E-10 1.5E-14 99.2 3.6 82 277-360 18-101 (175)
33 KOG3207 Beta-tubulin folding c 98.9 3.1E-10 6.7E-15 111.1 0.3 206 272-486 115-340 (505)
34 KOG1909 Ran GTPase-activating 98.9 2.5E-10 5.3E-15 108.9 -0.5 246 271-533 23-310 (382)
35 KOG1259 Nischarin, modulator o 98.8 7.7E-10 1.7E-14 103.1 -0.6 83 445-532 326-410 (490)
36 PF14580 LRR_9: Leucine-rich r 98.8 7.8E-09 1.7E-13 92.5 5.6 126 244-382 18-151 (175)
37 KOG2120 SCF ubiquitin ligase, 98.8 1.2E-10 2.5E-15 108.5 -6.8 79 326-404 187-271 (419)
38 KOG1909 Ran GTPase-activating 98.8 1.3E-09 2.9E-14 104.0 0.1 231 244-508 29-309 (382)
39 KOG2120 SCF ubiquitin ligase, 98.7 1.3E-10 2.7E-15 108.3 -8.0 181 348-534 186-376 (419)
40 PLN03150 hypothetical protein; 98.6 8.7E-08 1.9E-12 104.6 7.9 88 280-367 420-510 (623)
41 KOG1259 Nischarin, modulator o 98.5 1E-08 2.2E-13 95.8 -1.4 122 279-403 285-409 (490)
42 PF13855 LRR_8: Leucine rich r 98.4 4.2E-07 9.1E-12 66.6 4.3 56 302-357 2-59 (61)
43 PF13855 LRR_8: Leucine rich r 98.4 3.6E-07 7.7E-12 67.0 3.8 59 278-336 1-61 (61)
44 PLN03150 hypothetical protein; 98.4 7.2E-07 1.6E-11 97.5 7.7 101 303-403 420-525 (623)
45 KOG4341 F-box protein containi 98.3 2.1E-08 4.6E-13 98.0 -4.6 255 302-563 139-419 (483)
46 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.6E-12 98.9 -1.2 123 279-404 73-197 (414)
47 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3.1E-12 98.3 -1.7 108 272-382 89-197 (414)
48 KOG2982 Uncharacterized conser 98.1 6.7E-07 1.5E-11 83.8 0.9 78 279-359 46-133 (418)
49 PF12799 LRR_4: Leucine Rich r 98.1 4.5E-06 9.8E-11 56.1 3.6 39 302-340 2-40 (44)
50 KOG2982 Uncharacterized conser 97.9 3.4E-06 7.4E-11 79.2 1.9 224 301-553 45-287 (418)
51 PF12799 LRR_4: Leucine Rich r 97.9 7.2E-06 1.6E-10 55.1 2.9 40 278-317 1-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.8 1.9E-06 4E-11 90.1 -2.3 98 303-403 166-264 (1096)
53 KOG3665 ZYG-1-like serine/thre 97.8 2.1E-05 4.5E-10 86.0 5.0 109 244-361 147-264 (699)
54 PRK15386 type III secretion pr 97.8 3.5E-05 7.5E-10 77.7 6.2 134 273-428 47-186 (426)
55 COG5238 RNA1 Ran GTPase-activa 97.8 4.5E-06 9.8E-11 77.4 -0.1 251 271-533 23-315 (388)
56 KOG3665 ZYG-1-like serine/thre 97.8 7E-06 1.5E-10 89.6 0.5 109 244-360 121-233 (699)
57 KOG1859 Leucine-rich repeat pr 97.7 1E-06 2.2E-11 91.9 -6.3 109 271-382 180-290 (1096)
58 KOG1947 Leucine rich repeat pr 97.7 4.3E-06 9.4E-11 89.3 -2.6 188 346-559 242-441 (482)
59 PRK15386 type III secretion pr 97.6 0.00011 2.4E-09 74.1 7.1 135 298-458 49-187 (426)
60 KOG4579 Leucine-rich repeat (L 97.6 3.2E-06 6.9E-11 70.3 -3.3 101 279-380 28-132 (177)
61 COG5238 RNA1 Ran GTPase-activa 97.5 1.9E-05 4.1E-10 73.4 -0.7 230 244-508 29-314 (388)
62 KOG4579 Leucine-rich repeat (L 97.4 1.8E-05 3.9E-10 66.0 -1.2 89 272-360 47-136 (177)
63 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.2E-09 61.9 4.4 78 281-360 22-101 (233)
64 KOG1644 U2-associated snRNP A' 97.1 0.00061 1.3E-08 60.9 4.9 103 279-382 43-151 (233)
65 KOG1947 Leucine rich repeat pr 97.0 4.7E-05 1E-09 81.4 -4.1 217 323-565 187-421 (482)
66 PRK04841 transcriptional regul 96.9 0.0063 1.4E-07 70.6 12.1 169 14-203 120-332 (903)
67 KOG2739 Leucine-rich acidic nu 96.6 0.00062 1.3E-08 63.5 0.8 84 275-360 40-129 (260)
68 KOG2123 Uncharacterized conser 96.6 0.00025 5.5E-09 66.3 -2.1 98 244-353 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.2 0.0017 3.8E-08 60.6 1.1 108 293-403 35-153 (260)
70 KOG2123 Uncharacterized conser 96.1 0.0003 6.5E-09 65.9 -4.4 106 275-382 16-128 (388)
71 PF00560 LRR_1: Leucine Rich R 95.8 0.0035 7.7E-08 35.0 0.6 17 303-319 2-18 (22)
72 PF00560 LRR_1: Leucine Rich R 95.0 0.015 3.2E-07 32.4 1.5 22 279-300 1-22 (22)
73 KOG0473 Leucine-rich repeat pr 94.1 0.0025 5.3E-08 58.4 -4.9 89 272-360 36-124 (326)
74 KOG3864 Uncharacterized conser 93.6 0.0085 1.8E-07 53.9 -2.3 34 449-482 102-135 (221)
75 PF13504 LRR_7: Leucine rich r 93.4 0.056 1.2E-06 27.9 1.5 13 326-338 3-15 (17)
76 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 27.9 1.4 16 302-317 2-17 (17)
77 PF13306 LRR_5: Leucine rich r 93.2 0.22 4.8E-06 42.2 6.0 81 272-355 6-89 (129)
78 KOG3864 Uncharacterized conser 92.6 0.011 2.3E-07 53.2 -3.1 82 474-556 103-187 (221)
79 COG2909 MalT ATP-dependent tra 91.6 0.7 1.5E-05 50.8 8.3 177 4-205 116-340 (894)
80 KOG0473 Leucine-rich repeat pr 91.4 0.0091 2E-07 54.8 -5.1 87 295-382 36-122 (326)
81 smart00369 LRR_TYP Leucine-ric 88.9 0.37 7.9E-06 27.9 2.0 18 301-318 2-19 (26)
82 smart00370 LRR Leucine-rich re 88.9 0.37 7.9E-06 27.9 2.0 18 301-318 2-19 (26)
83 PF13306 LRR_5: Leucine rich r 88.7 1.1 2.3E-05 37.8 5.8 99 244-356 11-112 (129)
84 PF13173 AAA_14: AAA domain 88.5 0.57 1.2E-05 39.8 3.8 47 6-52 52-98 (128)
85 TIGR03015 pepcterm_ATPase puta 88.4 1.4 2.9E-05 42.9 7.0 83 13-95 121-241 (269)
86 smart00370 LRR Leucine-rich re 87.7 0.5 1.1E-05 27.3 2.1 21 323-343 1-21 (26)
87 smart00369 LRR_TYP Leucine-ric 87.7 0.5 1.1E-05 27.3 2.1 21 323-343 1-21 (26)
88 PF05729 NACHT: NACHT domain 84.5 0.88 1.9E-05 40.2 3.1 41 13-53 79-130 (166)
89 KOG4308 LRR-containing protein 81.9 0.012 2.6E-07 61.9 -11.6 44 513-557 396-444 (478)
90 TIGR00635 ruvB Holliday juncti 81.8 2.8 6.1E-05 41.7 5.8 115 54-177 162-288 (305)
91 PRK00411 cdc6 cell division co 81.1 22 0.00047 36.7 12.4 88 110-198 285-380 (394)
92 PRK00080 ruvB Holliday junctio 74.3 8.8 0.00019 38.6 6.8 115 54-179 183-311 (328)
93 smart00367 LRR_CC Leucine-rich 72.7 2 4.4E-05 24.8 1.0 16 520-535 1-16 (26)
94 KOG4308 LRR-containing protein 72.6 0.08 1.7E-06 55.8 -8.6 156 244-404 114-301 (478)
95 PRK06893 DNA replication initi 71.0 3.3 7.3E-05 39.2 2.7 36 17-52 93-133 (229)
96 smart00364 LRR_BAC Leucine-ric 70.6 2.7 5.9E-05 24.3 1.2 17 302-318 3-19 (26)
97 PF01637 Arch_ATPase: Archaeal 66.6 8.7 0.00019 36.0 4.7 36 54-90 194-232 (234)
98 PRK05564 DNA polymerase III su 65.0 21 0.00046 35.6 7.2 39 14-52 93-132 (313)
99 PF13516 LRR_6: Leucine Rich r 62.8 2.4 5.2E-05 23.8 -0.1 11 302-312 3-13 (24)
100 smart00365 LRR_SD22 Leucine-ri 55.8 9.2 0.0002 22.2 1.6 14 301-314 2-15 (26)
101 PRK07471 DNA polymerase III su 55.7 32 0.0007 35.1 6.7 76 14-94 140-240 (365)
102 COG3903 Predicted ATPase [Gene 53.1 6 0.00013 40.1 0.9 170 5-179 78-293 (414)
103 cd00009 AAA The AAA+ (ATPases 51.3 35 0.00075 28.7 5.4 41 12-52 81-129 (151)
104 cd00561 CobA_CobO_BtuR ATP:cor 49.2 19 0.00042 31.7 3.4 45 8-52 87-137 (159)
105 PF02463 SMC_N: RecF/RecN/SMC 46.8 14 0.0003 34.5 2.3 38 15-52 158-198 (220)
106 PRK09162 hypoxanthine-guanine 46.5 22 0.00047 32.3 3.4 36 11-47 94-130 (181)
107 smart00368 LRR_RI Leucine rich 43.9 18 0.00038 21.3 1.6 14 301-314 2-15 (28)
108 PRK10536 hypothetical protein; 42.3 37 0.00079 32.7 4.3 37 11-50 169-210 (262)
109 TIGR02928 orc1/cdc6 family rep 42.3 3.5E+02 0.0075 27.3 12.0 69 111-180 278-352 (365)
110 COG1373 Predicted ATPase (AAA+ 42.2 40 0.00087 34.9 5.0 37 15-52 94-130 (398)
111 PF13401 AAA_22: AAA domain; P 41.9 41 0.00088 28.1 4.3 47 3-51 74-124 (131)
112 KOG3763 mRNA export factor TAP 37.5 14 0.0003 39.0 0.7 64 447-511 217-284 (585)
113 PRK13342 recombination factor 37.1 74 0.0016 33.2 6.1 75 13-90 90-194 (413)
114 TIGR02903 spore_lon_C ATP-depe 35.7 43 0.00094 36.9 4.2 50 3-52 280-333 (615)
115 PRK05707 DNA polymerase III su 33.2 1.3E+02 0.0027 30.3 6.8 74 14-93 106-204 (328)
116 PF14162 YozD: YozD-like prote 32.2 49 0.0011 22.6 2.4 29 149-177 22-52 (57)
117 PRK07940 DNA polymerase III su 29.7 1.4E+02 0.003 30.9 6.5 39 14-52 116-156 (394)
118 KOG3763 mRNA export factor TAP 29.7 21 0.00045 37.8 0.5 82 470-551 216-307 (585)
119 PRK06645 DNA polymerase III su 28.7 1.3E+02 0.0029 32.2 6.4 39 13-51 126-166 (507)
120 PF12802 MarR_2: MarR family; 28.5 2.1E+02 0.0045 20.0 6.9 59 118-184 2-60 (62)
121 TIGR00678 holB DNA polymerase 27.7 91 0.002 28.2 4.4 39 14-52 95-135 (188)
122 PF13177 DNA_pol3_delta2: DNA 25.7 54 0.0012 29.0 2.4 38 15-52 102-141 (162)
123 PRK08116 hypothetical protein; 24.0 77 0.0017 30.8 3.3 43 9-52 173-220 (268)
124 PRK09112 DNA polymerase III su 22.1 1.6E+02 0.0036 29.8 5.3 80 14-95 140-243 (351)
125 PRK05642 DNA replication initi 21.3 67 0.0015 30.4 2.3 35 18-52 100-139 (234)
126 PRK12323 DNA polymerase III su 21.3 3E+02 0.0066 30.6 7.2 40 13-52 122-163 (700)
127 PRK05205 bifunctional pyrimidi 21.1 1.1E+02 0.0023 27.6 3.4 29 12-41 93-122 (176)
128 PRK11081 tRNA guanosine-2'-O-m 20.3 1.6E+02 0.0034 27.9 4.4 45 5-49 6-52 (229)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-67 Score=577.39 Aligned_cols=522 Identities=26% Similarity=0.380 Sum_probs=385.3
Q ss_pred hHHHHHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCCh--------------------HHHHHhc-
Q 035853 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTCS--------------------DEIFSLC- 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~~--------------------~~~~~Lf- 60 (581)
++++..|.+.|++|||+|||||||++.+|+.++.|+|...+||||++|||+. +|||.||
T Consensus 248 ~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~ 327 (889)
T KOG4658|consen 248 DELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQ 327 (889)
T ss_pred HHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHH
Confidence 4789999999999999999999999999999999999998899999999981 9999999
Q ss_pred cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-----cc--eeccc--ccccc-------c---ccceeccccC
Q 035853 61 RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-----SL--VENMR--LTWRI-------Q---KWPLLFSIVE 118 (581)
Q Consensus 61 ~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-----t~--~~~~~--~~~~~-------~---~~~L~~sY~~ 118 (581)
+. |......++. +++| +||++|+|+|||++++|+. |+ |+..- +.+.+ . +++|++|||+
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 77 6653325566 9999 9999999999999999999 22 22220 02221 1 7999999999
Q ss_pred chhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCC-----ChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeCh
Q 035853 119 LPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPD-----NSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISF 193 (581)
Q Consensus 119 L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHd 193 (581)
||+++|.||+|||+||+||+|++++||.+||||||+.+ ++++.|+.|+.+||++||++..+.. ++..+|+|||
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHD 485 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHD 485 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeH
Confidence 99999999999999999999999999999999999976 7789999999999999999988754 6778999999
Q ss_pred HHHHHHHHhcc-----ccccc-c-CCCCc-cccCCCCCCeeEEEEEecccCCCccccc-CCcccEEEEecccc-cccccc
Q 035853 194 ITRGMLVLVAE-----FVEFV-N-VVPST-LRADRSLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVER-KHLSED 263 (581)
Q Consensus 194 li~dl~~~i~~-----~e~~~-~-~~~~~-~~~~~~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~-~~~~~~ 263 (581)
+|||||.++|. +|+.+ . +.+.. .+....+..+||++++ +.......... ++++++|.+.++.. ..
T Consensus 486 vvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~~n~~~l~---- 560 (889)
T KOG4658|consen 486 VVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQRNSDWLL---- 560 (889)
T ss_pred HHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEeecchhhh----
Confidence 99999999999 56544 2 21222 2244467889999999 77766677777 88999999999863 11
Q ss_pred hhhhhhhHHHhccCCceeEEEecCcc-cccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccch
Q 035853 264 VFTLEYCNAICKWFKFLRLLDLGTIV-LDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPD 341 (581)
Q Consensus 264 ~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~ 341 (581)
... ..+|..++.||+|||++|. +.++|.+|+.|.|||||+++++.+..+|.++++|..|.+|++..+ .+..+|.
T Consensus 561 -~is---~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 561 -EIS---GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred -hcC---HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence 233 6789999999999999877 679999999999999999999999999999999999999999999 5666666
Q ss_pred hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCC----eEEEeeecccchhchhhh
Q 035853 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQ----TFRVHENLSSYQSMLSNN 414 (581)
Q Consensus 342 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~----~L~l~~~~~~~~~~l~~~ 414 (581)
....|.+||+|.+...... .....++.+.+|++|....+. ..+...+..+.+|+ .+.+.++ .....+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~ 712 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISS 712 (889)
T ss_pred hhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecc
Confidence 5666999999988655421 111223444455555444433 22223334444444 2332222 44556667
Q ss_pred cCCCCCCCEEEeecCCc--c---------cC------Ccccc------cCC-CCCCCCCccEEEEeeccCCCCCcccccC
Q 035853 415 LCPLLHLESLKLVDERT--I---------AL------QPSSI------VLP-EYQFPPRLIELSLSNTELKYDPMPALEK 470 (581)
Q Consensus 415 l~~~~~L~~L~l~~~~~--i---------~L------~~l~l------~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 470 (581)
+..+.+|+.|.+..++. + .+ ....+ ..+ |....++|+.|.+..|....++++....
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHH
Confidence 77888888888887432 1 00 00001 233 5556788888888888777777777777
Q ss_pred CCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc----ccccccceEeeccC-cCCCCCcc
Q 035853 471 LPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN----DAMPKLESLIINPC-AYLKILPE 539 (581)
Q Consensus 471 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~l~~L~~L~l~~c-~~l~~lp~ 539 (581)
+..+..+.+..+.+.+.......++|+++..+.+.+- .+++|.... +.+|.+.++.+.+| +.+..+|.
T Consensus 793 ~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 793 LLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred hhhcccEEecccccccceeeecCCCCceeEecccCcc-chhheehhcCcccccCccccccceeccccceeecCC
Confidence 7777666665555554433444556666665555543 244443333 44555555555554 44444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.7e-56 Score=515.99 Aligned_cols=515 Identities=17% Similarity=0.134 Sum_probs=319.4
Q ss_pred HHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC------------h-------HHHHHhc-cc-cc
Q 035853 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC------------S-------DEIFSLC-RL-EN 64 (581)
Q Consensus 6 ~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~------------~-------~~~~~Lf-~~-f~ 64 (581)
..++++|++||+||||||||+.++|+.+.....|+++|||||||||+ | +|||+|| ++ |+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999988999999999999998 1 8999999 88 87
Q ss_pred CccccCCC-CChh-hHHhhcCCcchhhhhhccc-c-----ceeccccccccc-------ccceeccccCchh-hhHHHHh
Q 035853 65 GEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-S-----LVENMRLTWRIQ-------KWPLLFSIVELPQ-HLKLCCL 128 (581)
Q Consensus 65 ~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-t-----~~~~~~~~~~~~-------~~~L~~sY~~L~~-~lk~cFl 128 (581)
.+. +.++ ++++ +||++|+|+|||++++|+. . .|++. ...+. +++|++||++|++ ..|.||+
T Consensus 367 ~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~--l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl 443 (1153)
T PLN03210 367 KNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDM--LPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFR 443 (1153)
T ss_pred CCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHH--HHHHHhCccHHHHHHHHHhhhccCccchhhhhh
Confidence 643 3333 8899 9999999999999999999 1 34433 32222 7899999999987 5999999
Q ss_pred hhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHHHhcccccc
Q 035853 129 YLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVAEFVEF 208 (581)
Q Consensus 129 ~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~~i~~~e~~ 208 (581)
||||||+++.+ +.|..|+|.+.+. ++..++.|+++||+++.. ..++|||++|+||+++++++..
T Consensus 444 ~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 444 HIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred eehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcC
Confidence 99999999744 4577888877663 334589999999998754 3599999999999999987641
Q ss_pred c--------cCCCCcc--ccCCCCCCeeEEEEEecccCCC-c-cccc--CCcccEEEEeccccccc--ccchhhhhhhHH
Q 035853 209 V--------NVVPSTL--RADRSLEDFKRISVCRTVTNFD-S-WEHF--DTYLHSFLHLTVERKHL--SEDVFTLEYCNA 272 (581)
Q Consensus 209 ~--------~~~~~~~--~~~~~~~~~r~lsl~~~~~~~~-~-~~~~--~~~Lr~L~l~~~~~~~~--~~~~~~~~~~~~ 272 (581)
. +..+... .......+++.+++......+. + ...+ +++|+.|.+........ ..+ .+ +.
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~--~l---p~ 582 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW--HL---PE 582 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccccee--ec---Cc
Confidence 1 1000000 0111345677777762222111 1 1223 77888887765431100 000 01 12
Q ss_pred HhccC-CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCc
Q 035853 273 ICKWF-KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELR 350 (581)
Q Consensus 273 ~~~~~-~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~ 350 (581)
.+..+ ++||.|.+.++.++.+|..+ ...+|+.|+++++.+..+|..+..+++|+.|++++| .+..+|. ++.+++|+
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred chhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 22222 23555555555555555444 334555555555555555555555555555555554 3444443 44455555
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchh-------------------
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQS------------------- 409 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~------------------- 409 (581)
.|++++|.....+|..++++++|+.|++.+|. ..+|..+ ++++|+.|++++|. ...
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~--~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS--RLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC--CccccccccCCcCeeecCCCcc
Confidence 55555554444555555555555555555544 3333322 34455555555443 222
Q ss_pred -chhhhcCCCCCCCEEEeecCC--cc----------------cCCccc------c-cCC-CCCCCCCccEEEEeeccCCC
Q 035853 410 -MLSNNLCPLLHLESLKLVDER--TI----------------ALQPSS------I-VLP-EYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 410 -~l~~~l~~~~~L~~L~l~~~~--~i----------------~L~~l~------l-~lp-~~~~l~~L~~L~L~~~~l~~ 462 (581)
.+|..+ .+++|++|.+.... .+ .|+.+. + .+| +++.+++|+.|+|++|....
T Consensus 738 ~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 738 EEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred ccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC
Confidence 223222 22333333332200 00 011100 1 345 55555555555555553222
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..+ ++++|+.|++++|...... + ...++|+.|+++++ .++.+|..++.+++|+.|++++|+.++.+|..+.
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~-p---~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTF-P---DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCccccc-c---ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 222222 4555555555554332211 1 12346667777665 5667788888999999999999999999999999
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|+.+++++|+
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 99999999999998
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.9e-27 Score=273.34 Aligned_cols=321 Identities=20% Similarity=0.184 Sum_probs=199.5
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINP 299 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~ 299 (581)
.+++.+.+..+......+..+ +++|++|.+.++.... ..+ ...+..+++||+|++++|.+. .+|. +.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~-----~ip---~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~ 138 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG-----PIP---DDIFTTSSSLRYLNLSNNNFTGSIPR--GS 138 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC-----cCC---hHHhccCCCCCEEECcCCccccccCc--cc
Confidence 456667666222222233333 7777777777765432 122 344556777777777777665 4442 34
Q ss_pred cCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 300 LLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
+++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 566666666666665 5666666666666666666643 45666666666666666666666666666666666666666
Q ss_pred eecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC---cc--------cCCc-----ccc
Q 035853 378 VLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER---TI--------ALQP-----SSI 439 (581)
Q Consensus 378 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~i--------~L~~-----l~l 439 (581)
+.++. ...+..++.+++|+.|++++|. ....+|..+.++++|+.|+++++. .+ +|+. ..+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNN--LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCce--eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 66665 4555666666666666666664 445556666666666666666532 00 1111 113
Q ss_pred --cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 440 --VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 440 --~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
.+| ++..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..++.+++|+.|++++|.....+|..
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 455 5666667777777666666666666666777777777666655433 444556677777777776544456666
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..+++|+.|++++|+....+|..+..+++|+.|++.+|.
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 6667777777777777666777777788888888888875
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.5e-27 Score=273.82 Aligned_cols=314 Identities=21% Similarity=0.228 Sum_probs=198.8
Q ss_pred CCeeEEEEEecccC-CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccCc
Q 035853 223 EDFKRISVCRTVTN-FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINPL 300 (581)
Q Consensus 223 ~~~r~lsl~~~~~~-~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l 300 (581)
.+.|++.+. ++.. ..++....++|++|.+.++.... .. +..+..+++|++|++++|.+. .+|..++++
T Consensus 118 ~~L~~L~Ls-~n~l~~~~p~~~l~~L~~L~Ls~n~~~~------~~---p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 187 (968)
T PLN00113 118 SSLRYLNLS-NNNFTGSIPRGSIPNLETLDLSNNMLSG------EI---PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187 (968)
T ss_pred CCCCEEECc-CCccccccCccccCCCCEEECcCCcccc------cC---ChHHhcCCCCCEEECccCcccccCChhhhhC
Confidence 445555555 3222 11222225666666666655422 12 355667777777777777765 666677777
Q ss_pred CCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 301 LLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
++|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 267 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEEC
Confidence 77777777777765 5677777777777777777754 356777777777777777777776677777777777777777
Q ss_pred ecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEE
Q 035853 379 LHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIEL 453 (581)
Q Consensus 379 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L 453 (581)
..+. ...+..+.++++|+.|++++|. ....+|..+..+++|+.|+++++. + .+| ++..+++|+.|
T Consensus 268 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~~~~l~~L~~L~l~~n~--------~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 268 YQNKLSGPIPPSIFSLQKLISLDLSDNS--LSGEIPELVIQLQNLEILHLFSNN--------FTGKIPVALTSLPRLQVL 337 (968)
T ss_pred cCCeeeccCchhHhhccCcCEEECcCCe--eccCCChhHcCCCCCcEEECCCCc--------cCCcCChhHhcCCCCCEE
Confidence 7666 4566667777777777777765 555666667777777777776643 3 455 66667777777
Q ss_pred EEeeccCCCCCcccccCCCCCCeEEEecCcccCcee-----------------------eeCCCCCCCCcEEEecCCCcc
Q 035853 454 SLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKL-----------------------VCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 454 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-----------------------~~~~~~~~~L~~L~l~~~~~l 510 (581)
++++|.+.+..+..++.+++|+.|++++|.+.+... +..+..+++|+.|++.+|...
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 777777666666666777777777777665543321 222334555555655555433
Q ss_pred cccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 3455555556666666666665555555555566666666666664
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.94 E-value=8.8e-28 Score=238.42 Aligned_cols=154 Identities=27% Similarity=0.424 Sum_probs=117.4
Q ss_pred hHHHHHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC--------------------hHHHHHhc-
Q 035853 2 EQRKTALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC--------------------SDEIFSLC- 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~--------------------~~~~~~Lf- 60 (581)
+++++.|++.|+++|+||||||||+..+|+.+...++.+..||+||||||+ .+||++||
T Consensus 88 ~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~ 167 (287)
T PF00931_consen 88 EELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFK 167 (287)
T ss_dssp HHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHH
T ss_pred ccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999999999988888889999999998 19999999
Q ss_pred cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-----c--ceecccc--cccc-------c--ccceeccccCc
Q 035853 61 RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-----S--LVENMRL--TWRI-------Q--KWPLLFSIVEL 119 (581)
Q Consensus 61 ~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-----t--~~~~~~~--~~~~-------~--~~~L~~sY~~L 119 (581)
+. +.......+. ++.+ +|+++|+|+|||++++|++ + .|+.... .+.. . ..++.+||+.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L 247 (287)
T PF00931_consen 168 KRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSL 247 (287)
T ss_dssp HHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcC
Confidence 77 5544213344 8899 9999999999999999999 1 2222200 1111 1 77899999999
Q ss_pred hhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCC
Q 035853 120 PQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIP 155 (581)
Q Consensus 120 ~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~ 155 (581)
|+++|+||+|||+||+++.|+++.|+++|+|+|||+
T Consensus 248 ~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 248 PDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred CccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999999999996
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=3.1e-28 Score=243.38 Aligned_cols=313 Identities=22% Similarity=0.210 Sum_probs=264.8
Q ss_pred CCCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCccc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGIN 298 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~ 298 (581)
...+..|+|+. .+....+.... .+.||++.+..+.... ... ++.+.++.-|.+|||++|++.+.|..+.
T Consensus 53 ~lqkLEHLs~~-HN~L~~vhGELs~Lp~LRsv~~R~N~LKn-----sGi---P~diF~l~dLt~lDLShNqL~EvP~~LE 123 (1255)
T KOG0444|consen 53 RLQKLEHLSMA-HNQLISVHGELSDLPRLRSVIVRDNNLKN-----SGI---PTDIFRLKDLTILDLSHNQLREVPTNLE 123 (1255)
T ss_pred HHhhhhhhhhh-hhhhHhhhhhhccchhhHHHhhhcccccc-----CCC---Cchhcccccceeeecchhhhhhcchhhh
Confidence 34567778877 44433355555 8899999998887654 233 5777889999999999999999999999
Q ss_pred CcCCCcEEeccCCCCcccChhh-hcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSL-CNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
+-+++-+|+|++|+|..+|.++ -+|..|-.|||++|.+..+|..+.++..|+.|++++|.+...--..+..+++|++|.
T Consensus 124 ~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 124 YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 9999999999999999999654 588999999999999999999999999999999999987643334566788899999
Q ss_pred eecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccE
Q 035853 378 VLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIE 452 (581)
Q Consensus 378 l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~ 452 (581)
+++.. ..+|.++..+.+|+.++++.+ ....+|+.+.++++|+.|+++++. + .+. ..+.-.+|++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N~--------iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGNK--------ITELNMTEGEWENLET 272 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcCc--------eeeeeccHHHHhhhhh
Confidence 88887 788999999999999999998 678899999999999999999865 5 444 4445568999
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|+++.|.++ ..|..+.+++.|+.|.+.+|.+.-+.+|+.++.+-.|+.+...++ +++-.|..+..|++|+.|.++.|.
T Consensus 273 LNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 273 LNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNR 350 (1255)
T ss_pred hccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccc
Confidence 999999864 577888999999999999888888888999999999999999887 788899999999999999998765
Q ss_pred CCCCCcccccCCCCccEEEeeCCC
Q 035853 533 YLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 533 ~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+-.+|.++.-++.|+.|++.++|
T Consensus 351 -LiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 351 -LITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred -eeechhhhhhcCCcceeeccCCc
Confidence 66799999999999999999998
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1e-25 Score=225.43 Aligned_cols=318 Identities=17% Similarity=0.164 Sum_probs=206.0
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc--cCCCcc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD--EYPAGI 297 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i 297 (581)
...++.+.+. ......+|+.. +.+|+.|.+..+... .. -..++.++.||.+++..|+++ .+|..|
T Consensus 31 Mt~~~WLkLn-rt~L~~vPeEL~~lqkLEHLs~~HN~L~-------~v---hGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLN-RTKLEQVPEELSRLQKLEHLSMAHNQLI-------SV---HGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred hhheeEEEec-hhhhhhChHHHHHHhhhhhhhhhhhhhH-------hh---hhhhccchhhHHHhhhccccccCCCCchh
Confidence 3445555555 44444455555 666666666655542 12 345566667777777777665 667777
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
.++..|..|+|++|.+++.|..+..-+++-+|+|++|++..+|..+ -+++-|-.||+++|++. .+|+.+.++..||+|
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 7777777777777777777777777777777777777777777654 46666777777777665 566677777777777
Q ss_pred ceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccE
Q 035853 377 SVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIE 452 (581)
Q Consensus 377 ~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~ 452 (581)
.++++. ..-...+..+++|+.|.+++.. .....+|.++..+.||..++++.++ + .+| .+-.+++|+.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~--------Lp~vPecly~l~~Lrr 249 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENN--------LPIVPECLYKLRNLRR 249 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccC--------CCcchHHHhhhhhhhe
Confidence 777665 3333445556666666666654 3445566677777777777777654 5 666 6667777777
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC-cccccccCcccccccceEeeccC
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF-WLEEWTMENDAMPKLESLIINPC 531 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~l~~L~~L~l~~c 531 (581)
|+|++|.++. .....+...+|++|+++.|.++. +|.....+++|+.|.+.++. ..+.+|..++.+..|+.+...+|
T Consensus 250 LNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 250 LNLSGNKITE-LNMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eccCcCceee-eeccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 7777776543 22244556677777777666643 24455667777777777653 23467777888888888877765
Q ss_pred cCCCCCcccccCCCCccEEEeeCCC-HHHHHHHh
Q 035853 532 AYLKILPEELWRIKSLTKLELWWPR-FELRETLR 564 (581)
Q Consensus 532 ~~l~~lp~~l~~l~~L~~L~l~~c~-~~~~~~~~ 564 (581)
+++-+|.++.+|..|+.|.++.+. ..+.+.+.
T Consensus 327 -~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 327 -KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIH 359 (1255)
T ss_pred -ccccCchhhhhhHHHHHhcccccceeechhhhh
Confidence 477788888888888888887765 23334443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.4e-23 Score=207.32 Aligned_cols=313 Identities=20% Similarity=0.188 Sum_probs=208.4
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-Cccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGIN 298 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~ 298 (581)
..+...+.+. .+....+|.-. ..+++.|.+.++...+ .- ...++.++.||+|||+.|.++.+| .++.
T Consensus 101 l~nLq~v~l~-~N~Lt~IP~f~~~sghl~~L~L~~N~I~s------v~---se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 101 LPNLQEVNLN-KNELTRIPRFGHESGHLEKLDLRHNLISS------VT---SEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred CCcceeeeec-cchhhhcccccccccceeEEeeecccccc------cc---HHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 3445556666 44444455544 6778888888887754 22 577788889999999999988666 3466
Q ss_pred CcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 299 PLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
.-.++++|+|++|+|+.+- ..+..+.+|.+|.|+.|.+..+|... .+|++|+.|++..|.+.-.---.|..|.+|+.|
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 6678999999999988554 46778889999999999999998655 459999999999888742212346778888888
Q ss_pred ceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCcc
Q 035853 377 SVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLI 451 (581)
Q Consensus 377 ~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~ 451 (581)
.+..+. ..+- ..+-.|.+++.|++..+. ....-..++.+++.|+.|+++.+. + ++- ....+++|+
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~--l~~vn~g~lfgLt~L~~L~lS~Na--------I~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNR--LQAVNEGWLFGLTSLEQLDLSYNA--------IQRIHIDSWSFTQKLK 320 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccch--hhhhhcccccccchhhhhccchhh--------hheeecchhhhcccce
Confidence 888777 2222 235567788888888875 444445667778888888888754 4 332 455677788
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc---ccCcccccccceEee
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW---TMENDAMPKLESLII 528 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~L~~L~l 528 (581)
.|+|++|.++.-....+..+..|++|.|+.|++.... ...+.++++|+.|+|+++..--.+ ...+..+|+|+.|.+
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRL 399 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheee
Confidence 8888777777666666767777777777766553221 223445566666666654211111 122344666666666
Q ss_pred ccCcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 529 NPCAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 529 ~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
.||. ++++|. .+..+++|++|++.+|+
T Consensus 400 ~gNq-lk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 400 TGNQ-LKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCce-eeecchhhhccCcccceecCCCCc
Confidence 6653 555553 45556666666666554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=4.6e-21 Score=222.32 Aligned_cols=294 Identities=17% Similarity=0.159 Sum_probs=207.1
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc------cc-cCCCcccCcC-CCcEEeccCCCCcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV------LD-EYPAGINPLL-LLKYLVLNIPSLKH 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~------l~-~lp~~i~~l~-~Lr~L~L~~~~i~~ 315 (581)
..+++.+.+........ ... ...|..|++|+.|.+..+. +. .+|..+..++ +||+|++.++.++.
T Consensus 531 ~~~v~~i~l~~~~~~~~----~i~---~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~ 603 (1153)
T PLN03210 531 TKKVLGITLDIDEIDEL----HIH---ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603 (1153)
T ss_pred cceeeEEEeccCcccee----eec---HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC
Confidence 45666666554333221 122 5789999999999997653 22 5777777765 69999999999999
Q ss_pred cChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCC
Q 035853 316 LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLP 393 (581)
Q Consensus 316 lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~ 393 (581)
+|..+ .+.+|+.|++.++.+..+|.++..+++|+.|+++++.....+| .++.+++|++|++.+|. ..+|..+++++
T Consensus 604 lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 604 MPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC
Confidence 99887 5799999999999999999999999999999999987666777 58899999999999987 78889999999
Q ss_pred CCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcc--------cCC-----cccc-cCC-CCCCC-----------
Q 035853 394 SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTI--------ALQ-----PSSI-VLP-EYQFP----------- 447 (581)
Q Consensus 394 ~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i--------~L~-----~l~l-~lp-~~~~l----------- 447 (581)
+|+.|++++|. ....+|..+ ++++|+.|+++++..+ +|+ ...+ .+| .+ .+
T Consensus 682 ~L~~L~L~~c~--~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 682 KLEDLDMSRCE--NLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CCCEEeCCCCC--CcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-ccccccccccccc
Confidence 99999999997 677777765 6888999998875321 122 2223 444 22 22
Q ss_pred --------------------CCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCC
Q 035853 448 --------------------PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 448 --------------------~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (581)
++|+.|++++|......|..++++++|+.|++++|...... |... .+++|+.|++++|
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI-NLESLESLDLSGC 835 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-CccccCEEECCCC
Confidence 34555555555444444555555566666666554332222 2211 4555666666665
Q ss_pred CcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 508 FWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 508 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+..+|.. .++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~-i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTG-IEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCC-CccChHHHhcCCCCCEEECCCCC
Confidence 555544432 3456666666553 45677788889999999999987
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=3.4e-22 Score=199.23 Aligned_cols=321 Identities=18% Similarity=0.161 Sum_probs=255.9
Q ss_pred CCCCeeEEEEEecccC-CCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-Cc
Q 035853 221 SLEDFKRISVCRTVTN-FDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~-~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~ 296 (581)
....+.++.+. .+.+ ..-.+.. .+-+|+|.++.+.... .. .+.|.+-.+++.|+|++|.++.+- ..
T Consensus 123 ~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN~is~------i~---~~sfp~~~ni~~L~La~N~It~l~~~~ 192 (873)
T KOG4194|consen 123 ESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRNLISE------IP---KPSFPAKVNIKKLNLASNRITTLETGH 192 (873)
T ss_pred cccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhchhhc------cc---CCCCCCCCCceEEeecccccccccccc
Confidence 45668889998 5444 3333444 8999999999988754 33 677888889999999999998554 56
Q ss_pred ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 297 INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
|..+.+|..|.|+.|+++.+|. .+.+|++|+.|+|..|.++.+ ...+..|++|+.|.+..|.+...-...|..+.+++
T Consensus 193 F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme 272 (873)
T KOG4194|consen 193 FDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKME 272 (873)
T ss_pred ccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccc
Confidence 8888999999999999999995 566699999999999987766 45578899999999999988744444578899999
Q ss_pred EeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCC
Q 035853 375 FISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPR 449 (581)
Q Consensus 375 ~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~ 449 (581)
+|++..+. .-.-..+.+++.|+.|+++.+. ....-+.....+++|+.|+++.+. + ++| .+..+..
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na--I~rih~d~WsftqkL~~LdLs~N~--------i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA--IQRIHIDSWSFTQKLKELDLSSNR--------ITRLDEGSFRVLSQ 342 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchhh--hheeecchhhhcccceeEeccccc--------cccCChhHHHHHHH
Confidence 99999888 3334457789999999999997 666667778888999999999866 7 887 7888999
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCce--eeeCCCCCCCCcEEEecCCCccccccc-CcccccccceE
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRK--LVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESL 526 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L 526 (581)
|+.|.|+.|.+..-.-..+..+.+|+.|+|+.|.+...+ -...+.++++|+.|.+.++ +++.+|. .+..+++|+.|
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCccccee
Confidence 999999999875544456778999999999988764322 1234667999999999998 7888875 47889999999
Q ss_pred eeccCcCCCCCcccccCCCCccEEEe------eCCCHHHHHHH
Q 035853 527 IINPCAYLKILPEELWRIKSLTKLEL------WWPRFELRETL 563 (581)
Q Consensus 527 ~l~~c~~l~~lp~~l~~l~~L~~L~l------~~c~~~~~~~~ 563 (581)
++.+|+.-.--|..+..+ .|++|.+ .+|.-.|...+
T Consensus 422 dL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW 463 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW 463 (873)
T ss_pred cCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence 999999655456677777 8888865 46775565443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.1e-22 Score=194.47 Aligned_cols=259 Identities=21% Similarity=0.205 Sum_probs=178.4
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
|..|++++|.+..+-..+.++..|.+|++++|.+.++|++++.+..++.|+.+++++.++|..++.+.+|++++.++|.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 45556666666555555666666666666666666666666666666666666666666666666666666666666665
Q ss_pred CCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSS 438 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~ 438 (581)
. .+|++++.+..|+.++..++. ...|..++++.+|..+.+.++ ...++|+..-.++.|++|+...+.
T Consensus 127 ~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n---~l~~l~~~~i~m~~L~~ld~~~N~-------- 194 (565)
T KOG0472|consen 127 K-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN---KLKALPENHIAMKRLKHLDCNSNL-------- 194 (565)
T ss_pred e-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc---chhhCCHHHHHHHHHHhcccchhh--------
Confidence 4 555666666666666655555 556666666666666666666 334444444446666666665533
Q ss_pred c-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 439 I-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 439 l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
+ .+| .++.+.+|..|++..|++. ..+.|++|..|++|+++.|.+..-. ......+++|..|++.++ ++++.|.+
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~N~i~~lp-ae~~~~L~~l~vLDLRdN-klke~Pde 270 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGENQIEMLP-AEHLKHLNSLLVLDLRDN-KLKEVPDE 270 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcccHHHhhH-HHHhcccccceeeecccc-ccccCchH
Confidence 4 677 7777777888888877653 3447888888888888866553221 223457889999999987 78999999
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+.-+.+|++|++++|. +.++|..++++ .|+.|.+.|+|
T Consensus 271 ~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCc
Confidence 9999999999999876 67889899999 99999999999
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=7.4e-22 Score=188.75 Aligned_cols=246 Identities=22% Similarity=0.241 Sum_probs=152.2
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
.+.+.++..|.+|++.++++..+|..++.+..++.|+.++|++..+|+.++.+.+|..|+.+++.+.++|++++.+-.|.
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLE 140 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhh
Confidence 45566666677777777766666666776666667777776666677666666677777666666666666666666666
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
.++.++|.+. ..|.+++++.+|..+.+.++. ...++..-+++.|++|+...+ ..+.+|..++.+.+|+.|++..+
T Consensus 141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhhc
Confidence 6666666665 566666666666666666665 445544444666666666555 56666666666666666666654
Q ss_pred CcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 430 RTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 430 ~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
. + .+|.|..|+.|++|.+..|.+.--......+++++.+|++.+|.+... |....-+.+|+.|+++++
T Consensus 217 k--------i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~--Pde~clLrsL~rLDlSNN- 285 (565)
T KOG0472|consen 217 K--------IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV--PDEICLLRSLERLDLSNN- 285 (565)
T ss_pred c--------cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC--chHHHHhhhhhhhcccCC-
Confidence 4 4 555555666666666666654322222233566666666665555322 333344556666666665
Q ss_pred cccccccCcccccccceEeeccCc
Q 035853 509 WLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 509 ~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
.+..+|.+.+++ .|+.|.+.|||
T Consensus 286 ~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 286 DISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccCCcccccc-eeeehhhcCCc
Confidence 456666666666 66666666665
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=2.8e-20 Score=195.12 Aligned_cols=297 Identities=22% Similarity=0.245 Sum_probs=172.5
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccC
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLS 325 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 325 (581)
+|++|.+.++.... . +..+..+.+|+.|.++.|.+.++|.++.++.+|++|+|.+|.+..+|.++..+++
T Consensus 46 ~L~~l~lsnn~~~~-------f---p~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS-------F---PIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eeEEeecccccccc-------C---CchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 47777777776643 1 4556667777777777777777777777777888888887777777877777888
Q ss_pred CcEEEecCCcccccchhhhcCCCCcEeecCCc-------------------ccCCCCCCccCC-----------------
Q 035853 326 LHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI-------------------TLPAHPGKCCSS----------------- 369 (581)
Q Consensus 326 L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~-------------------~~~~~~p~~i~~----------------- 369 (581)
|+.|++++|.+..+|.-+..+..+..++.++| .+.+.++..++.
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 88888777766665544333333333322222 111111111110
Q ss_pred --------------------------------------------CCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 370 --------------------------------------------LENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 370 --------------------------------------------l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
-.+|+.++++.+. ..+|+.++.+.+|+.+.+..+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 0233344444333 4455666777788888877774
Q ss_pred c--------------------cchhchhhhcCCCCCCCEEEeecCC--cc----------cCCccc-----c-cCCC--C
Q 035853 405 S--------------------SYQSMLSNNLCPLLHLESLKLVDER--TI----------ALQPSS-----I-VLPE--Y 444 (581)
Q Consensus 405 ~--------------------~~~~~l~~~l~~~~~L~~L~l~~~~--~i----------~L~~l~-----l-~lp~--~ 444 (581)
- ...+.+|..+...++|++|++..+. .+ .++.+. + .+|. =
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 0 0122334445556667777776522 00 111111 1 2231 1
Q ss_pred CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc-------
Q 035853 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN------- 517 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~------- 517 (581)
...+.|+.|.+.+|.++....+.+.++++|+.|+|++|.+..-. ......++.|+.|+|++| .++.+|...
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhH
Confidence 23567777888888888888888888888888888877654222 233556777777788776 566665444
Q ss_pred ---------------ccccccceEeeccCcCCC--CCcccccCCCCccEEEeeCCC
Q 035853 518 ---------------DAMPKLESLIINPCAYLK--ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 518 ---------------~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|.|+.++++.|. ++ .+|..... ++|++|+++||+
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 345566666666443 32 22222211 567777777766
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.2e-18 Score=182.91 Aligned_cols=217 Identities=24% Similarity=0.261 Sum_probs=115.0
Q ss_pred CCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeee
Q 035853 325 SLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 325 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+|++++++++.+..+|+.++.+.+|+.++..+|.+. .+|..+...++|+.|.+..+. ..++..+..++.|+.|++..+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 344444444444455555555555555555555543 444444444455555544444 455555556666666666665
Q ss_pred cc-c----------------------------------------------chhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 404 LS-S----------------------------------------------YQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 404 ~~-~----------------------------------------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.- . ..+..-..+.++.+|+.|+++++.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr------ 394 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR------ 394 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc------
Confidence 30 0 111112223333444444444433
Q ss_pred ccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 437 SSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 437 l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+| .+.+++.|+.|.|++|+++ ..+..+..++.|++|...+|.+. .+| .+..++.|+.++++.| ++..+
T Consensus 395 --L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N-~L~~~ 467 (1081)
T KOG0618|consen 395 --LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCN-NLSEV 467 (1081)
T ss_pred --cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccc-hhhhh
Confidence 4 455 3455555555555555543 33345555555555555544432 223 5667899999999987 56654
Q ss_pred ccCcc-cccccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 514 TMEND-AMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 514 ~~~~~-~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
..... .-|+|++|+++||..+..--..+..+.++...++.-.
T Consensus 468 ~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 468 TLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 33222 2289999999999875433334444555555555433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=1.4e-16 Score=173.67 Aligned_cols=242 Identities=21% Similarity=0.249 Sum_probs=179.0
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCc
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 357 (581)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.+..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356788888888888887665 478899999998888887764 589999999888888887654 47889999988
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.+. .+|..+. ++|+.|+++++. ..+|..+. ++|+.|++++|. ...+|..+. ++|+.|+++++.
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N~------ 315 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSNS------ 315 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCCc------
Confidence 876 6776654 478888888777 55565553 578999998884 334554432 467788888755
Q ss_pred ccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 437 SSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 437 l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
+ .+| .+ .++|+.|++++|.++. .+..+ .++|+.|++++|.+.. ++.. ..++|+.|++++| .+..+|
T Consensus 316 --Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~--lp~~L~~LdLs~N-~Lt~LP 383 (754)
T PRK15370 316 --LTALPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPET--LPPTITTLDVSRN-ALTNLP 383 (754)
T ss_pred --cccCCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChh--hcCCcCEEECCCC-cCCCCC
Confidence 5 666 43 3689999999998764 33333 3789999999887753 2222 2468999999998 577787
Q ss_pred cCcccccccceEeeccCcCCCCCcccc----cCCCCccEEEeeCCC
Q 035853 515 MENDAMPKLESLIINPCAYLKILPEEL----WRIKSLTKLELWWPR 556 (581)
Q Consensus 515 ~~~~~l~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~l~~c~ 556 (581)
..+. ++|+.|++++|. +..+|..+ ..++++..|.+.+||
T Consensus 384 ~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 384 ENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 6543 479999999986 55676644 345888999999998
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.8e-15 Score=163.99 Aligned_cols=232 Identities=22% Similarity=0.132 Sum_probs=160.7
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
+|+.|++.+|+++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.+..+|.. ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCc
Confidence 677777777777777643 46778888888777777743 35677777877777776652 3467778888877
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcc
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l 437 (581)
+. .+|.. .++|+.|+++++. ..++.. ..+|+.|++++|. ...+|.. ..+|+.|+++++.
T Consensus 294 Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~---L~~LP~l---p~~Lq~LdLS~N~------- 353 (788)
T PRK15387 294 LT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ---LTSLPTL---PSGLQELSVSDNQ------- 353 (788)
T ss_pred cc-ccccc---ccccceeECCCCccccCCCC---cccccccccccCc---ccccccc---ccccceEecCCCc-------
Confidence 65 45542 3578888887776 433331 2356677777764 3334431 2478888888765
Q ss_pred cc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC
Q 035853 438 SI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME 516 (581)
Q Consensus 438 ~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 516 (581)
+ .+|.+ .++|+.|++++|.+.. .+. ..++|+.|++++|.+... +. ..++|+.|++++| .+..+|..
T Consensus 354 -Ls~LP~l--p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~L--P~---l~s~L~~LdLS~N-~LssIP~l 420 (788)
T PRK15387 354 -LASLPTL--PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSL--PV---LPSELKELMVSGN-RLTSLPML 420 (788)
T ss_pred -cCCCCCC--Ccccceehhhcccccc-Ccc---cccccceEEecCCcccCC--CC---cccCCCEEEccCC-cCCCCCcc
Confidence 6 66621 3567888888887653 332 235789999998877642 22 2468999999998 47777753
Q ss_pred cccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
..+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 421 ---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 421 ---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 3578889999876 66899989999999999999997
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.64 E-value=1.6e-15 Score=164.37 Aligned_cols=259 Identities=16% Similarity=0.058 Sum_probs=191.6
Q ss_pred EEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEE
Q 035853 227 RISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYL 306 (581)
Q Consensus 227 ~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L 306 (581)
.+.+. ......+|..+.++++.|.+.++.... . + ..+++|++|++++|.++.+|.. .++|+.|
T Consensus 205 ~LdLs-~~~LtsLP~~l~~~L~~L~L~~N~Lt~------L----P---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L 267 (788)
T PRK15387 205 VLNVG-ESGLTTLPDCLPAHITTLVIPDNNLTS------L----P---ALPPELRTLEVSGNQLTSLPVL---PPGLLEL 267 (788)
T ss_pred EEEcC-CCCCCcCCcchhcCCCEEEccCCcCCC------C----C---CCCCCCcEEEecCCccCcccCc---cccccee
Confidence 45555 444444666556689999998877643 1 1 2357899999999999988854 3688999
Q ss_pred eccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc
Q 035853 307 VLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT 385 (581)
Q Consensus 307 ~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~ 385 (581)
++++|.+..+|.. ..+|+.|++++|.+..+|.. .++|+.|++++|.+. .+|... .+|+.|++.+|. ..+
T Consensus 268 ~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~lp---~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 268 SIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTSL 337 (788)
T ss_pred eccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCccc-cCCCCc---ccccccccccCccccc
Confidence 9999999988864 36788999999999999873 578999999999887 455432 357778888776 444
Q ss_pred hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCC
Q 035853 386 QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 386 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~ 464 (581)
|. + ..+|+.|++++|. ...+|.. ..+|+.|+++++. + .+|.+ .++|+.|++++|.++. .
T Consensus 338 P~-l--p~~Lq~LdLS~N~---Ls~LP~l---p~~L~~L~Ls~N~--------L~~LP~l--~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 338 PT-L--PSGLQELSVSDNQ---LASLPTL---PSELYKLWAYNNR--------LTSLPAL--PSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cc-c--ccccceEecCCCc---cCCCCCC---Ccccceehhhccc--------cccCccc--ccccceEEecCCcccC-C
Confidence 43 1 2479999999984 3445543 3567888888755 6 67721 3579999999998764 3
Q ss_pred cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccc
Q 035853 465 MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEEL 541 (581)
Q Consensus 465 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l 541 (581)
+. ..++|+.|++++|.+... |. .+.+|+.|++++| .++.+|..+..+++|+.|++++|+.....|..+
T Consensus 398 P~---l~s~L~~LdLS~N~LssI--P~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 398 PV---LPSELKELMVSGNRLTSL--PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC---cccCCCEEEccCCcCCCC--Cc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 22 236899999999887642 32 2457899999997 688999999999999999999999776666544
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=7.9e-18 Score=143.26 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=71.7
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
.+.+...|.|++++++.+|..|..+.+|+.|++.+|.++++|.+++.++.|+.|++.-+.+..+|.+++.++.|+.||++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44445555555555555555555566666666666556666655666666666665555555556556556666666655
Q ss_pred CcccC-CCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeee
Q 035853 356 SITLP-AHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 356 ~~~~~-~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+|.+. ..+|..|-.++.|+.|++..++ ..+|.+++++++|+.|.+..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 55543 2444445455555555555555 555555555555555555544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=2e-15 Score=164.53 Aligned_cols=241 Identities=20% Similarity=0.223 Sum_probs=128.6
Q ss_pred eeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCc
Q 035853 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLK 304 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 304 (581)
...+.+. +.....++..+.++++.|.+.++.... . +..+ +.+|++|++++|.++.+|..+. .+|+
T Consensus 180 ~~~L~L~-~~~LtsLP~~Ip~~L~~L~Ls~N~Lts------L----P~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~ 244 (754)
T PRK15370 180 KTELRLK-ILGLTTIPACIPEQITTLILDNNELKS------L----PENL--QGNIKTLYANSNQLTSIPATLP--DTIQ 244 (754)
T ss_pred ceEEEeC-CCCcCcCCcccccCCcEEEecCCCCCc------C----Chhh--ccCCCEEECCCCccccCChhhh--cccc
Confidence 3445554 333333444445567777776665532 1 1211 2467777777777776665543 3677
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S 383 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~ 383 (581)
.|++++|.+..+|..+. .+|+.|++++|.+..+|..+. ++|++|++++|.+. .+|..+. ++|+.|+++++. .
T Consensus 245 ~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 245 EMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred EEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 77777777777776553 467777777776666766543 46777777777665 3454332 356666666665 3
Q ss_pred cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCC
Q 035853 384 CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.++..+. ++|+.|++++|. ...+|..+. ++|+.|+++++. + .+| .+ .++|++|++++|.++
T Consensus 318 ~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~l~--~sL~~L~Ls~N~--------L~~LP~~l--p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 318 ALPETLP--PGLKTLEAGENA---LTSLPASLP--PELQVLDVSKNQ--------ITVLPETL--PPTITTLDVSRNALT 380 (754)
T ss_pred cCCcccc--ccceeccccCCc---cccCChhhc--CcccEEECCCCC--------CCcCChhh--cCCcCEEECCCCcCC
Confidence 3333332 456666666663 223444332 456666666544 4 455 33 245666666666554
Q ss_pred CCCcccccCCCCCCeEEEecCcccCce--eeeCCCCCCCCcEEEecCC
Q 035853 462 YDPMPALEKLPHLRVLKLKKNSFFGRK--LVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 462 ~~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 507 (581)
. .++.+. ++|+.|++++|.+.... ++.....++++..|++.+|
T Consensus 381 ~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 381 N-LPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred C-CCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 2 222222 24555666655543211 1112233455555555555
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-17 Score=142.01 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=147.1
Q ss_pred ccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC
Q 035853 239 SWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 239 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++.-+ ++++..|.++.+... .. ++-+..+.+|++|++++++++++|.+++.++.||.|+++-|++..+|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-------~v---ppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-------VV---PPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred cccccchhhhhhhhcccCcee-------ec---CCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCc
Confidence 34444 788888888888763 33 67888999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCcEEEecCCcc--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCC
Q 035853 318 SSLCNLLSLHTLDMRWSYI--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPS 394 (581)
Q Consensus 318 ~~i~~L~~L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~ 394 (581)
..++.++.|++||+.++++ ..+|..+..++.|+.|+++.|.+. .+|..++++++||.|.+..++ ..+|.+++.+..
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~ 174 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTR 174 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHH
Confidence 9999999999999999955 678999999999999999999987 889999999999999999998 889999999999
Q ss_pred CCeEEEeeecccchhchhhhcCCC
Q 035853 395 LQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 395 L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
|++|+|.++ ....+|..++.+
T Consensus 175 lrelhiqgn---rl~vlppel~~l 195 (264)
T KOG0617|consen 175 LRELHIQGN---RLTVLPPELANL 195 (264)
T ss_pred HHHHhcccc---eeeecChhhhhh
Confidence 999999999 455666665543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=3.5e-16 Score=157.78 Aligned_cols=265 Identities=19% Similarity=0.148 Sum_probs=119.7
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCcc-------cChhhhcccCCcEEEecCCccc-
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLKH-------LPSSLCNLLSLHTLDMRWSYIH- 337 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~l~- 337 (581)
...+..+.+|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345555666777777776653 344445555566666666654432 2233445556666666555443
Q ss_pred ccchhhhcCCC---CcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCC-CCCCeEEEeeec--ccchhch
Q 035853 338 HTPDEIWKMNE---LRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRL-PSLQTFRVHENL--SSYQSML 411 (581)
Q Consensus 338 ~lp~~i~~l~~---L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l-~~L~~L~l~~~~--~~~~~~l 411 (581)
..+..+..+.+ |++|++++|.+..... ..+...+..+ ++|+.|++++|. ......+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 22333333333 5555555554431000 0112233334 455555555554 0011223
Q ss_pred hhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCC----cccccCCCCCCeEEEecCccc
Q 035853 412 SNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDP----MPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 412 ~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~ 485 (581)
+..+..+++|+.|++++++ +....+ .++ .+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~---l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANNG---IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCCC---CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3334444445555544422 000000 111 1223345666666665544321 223445566666666666554
Q ss_pred CceeeeCC----CCCCCCcEEEecCCCcc----cccccCcccccccceEeeccCcCCCC----CcccccCC-CCccEEEe
Q 035853 486 GRKLVCSS----GGFPSLKVMHLKSMFWL----EEWTMENDAMPKLESLIINPCAYLKI----LPEELWRI-KSLTKLEL 552 (581)
Q Consensus 486 ~~~~~~~~----~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~l~~l-~~L~~L~l 552 (581)
+..+.... ...+.|++|++.+|... ..+......+++|+.+++++|..... +...+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 32211111 12356666666665321 12222334456666666666654322 22233333 56666666
Q ss_pred eCCC
Q 035853 553 WWPR 556 (581)
Q Consensus 553 ~~c~ 556 (581)
.++|
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 5554
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=1.7e-14 Score=159.86 Aligned_cols=200 Identities=22% Similarity=0.150 Sum_probs=146.2
Q ss_pred ccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc--cccCCC-cccCcCCCcEEeccCCC-C
Q 035853 239 SWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV--LDEYPA-GINPLLLLKYLVLNIPS-L 313 (581)
Q Consensus 239 ~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~--l~~lp~-~i~~l~~Lr~L~L~~~~-i 313 (581)
.++.. ...+|...+.++.... ...-..++.|++|-+.++. +..++. .|..+++||+|||++|. +
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~-----------~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEH-----------IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cccccchhheeEEEEeccchhh-----------ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 34444 7788998888887744 2233345579999999986 555553 47789999999999865 7
Q ss_pred cccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC----Ccchhhh
Q 035853 314 KHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS----SCTQDIL 389 (581)
Q Consensus 314 ~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l 389 (581)
.++|.+|++|.+|++|+++++.+..+|.+++++.+|.+|++..+.....+|.....|.+|++|.+.... .....++
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el 664 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL 664 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhh
Confidence 799999999999999999999999999999999999999999887765666666679999999998765 4556677
Q ss_pred CCCCCCCeEEEeeecccchhchhhhcCCCCCCC----EEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCC
Q 035853 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLE----SLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 390 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.++.+|+.+.+.... . .+...+..+..|. .+.+.++. . ..+ .+..+.+|+.|.+.+|...
T Consensus 665 ~~Le~L~~ls~~~~s--~--~~~e~l~~~~~L~~~~~~l~~~~~~--------~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 665 ENLEHLENLSITISS--V--LLLEDLLGMTRLRSLLQSLSIEGCS--------KRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hcccchhhheeecch--h--HhHhhhhhhHHHHHHhHhhhhcccc--------cceeecccccccCcceEEEEcCCCc
Confidence 788888888886654 1 2222223333333 22222211 2 333 5667888888888888754
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=3.2e-15 Score=150.78 Aligned_cols=255 Identities=18% Similarity=0.064 Sum_probs=152.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-------CCCcccCcCCCcEEeccCCCCc-c
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-------YPAGINPLLLLKYLVLNIPSLK-H 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-------lp~~i~~l~~Lr~L~L~~~~i~-~ 315 (581)
..+++.+.+.++...... . ... ...+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+. .
T Consensus 22 l~~L~~l~l~~~~l~~~~-~-~~i---~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEA-A-KAL---ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HhhccEEeecCCCCcHHH-H-HHH---HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 667999999988763311 0 122 4567788889999999987652 3345677889999999999987 4
Q ss_pred cChhhhcccC---CcEEEecCCccc-----ccchhhhcC-CCCcEeecCCcccCCC----CCCccCCCCCCcEeceecCC
Q 035853 316 LPSSLCNLLS---LHTLDMRWSYIH-----HTPDEIWKM-NELRHLNFGSITLPAH----PGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 316 lp~~i~~L~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~~~~----~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+..+..+.+ |+.|++++|.+. .+...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++.++.
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence 5566666665 999999999765 334456667 8999999999987642 22234455566666666655
Q ss_pred -C-----cchhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEE
Q 035853 383 -S-----CTQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELS 454 (581)
Q Consensus 383 -~-----~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~ 454 (581)
. .++..+..+++|+.|++++|. ......+... +..+++|++|+
T Consensus 177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~-----------------------------~~~~~~L~~L~ 227 (319)
T cd00116 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET-----------------------------LASLKSLEVLN 227 (319)
T ss_pred CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH-----------------------------hcccCCCCEEe
Confidence 1 122334444566666666554 0011122222 33455666666
Q ss_pred EeeccCCCCCccccc-----CCCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCCcccc----cccCcccc-c
Q 035853 455 LSNTELKYDPMPALE-----KLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMFWLEE----WTMENDAM-P 521 (581)
Q Consensus 455 L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l-~ 521 (581)
+++|.+++..+..+. ..+.|+.|++++|.+.+.. +......+++|+.+++++|.--.. +....... +
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~ 307 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGN 307 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCC
Confidence 666655432222221 1356777777766554221 111233446677777776632211 22233444 6
Q ss_pred ccceEeeccCc
Q 035853 522 KLESLIINPCA 532 (581)
Q Consensus 522 ~L~~L~l~~c~ 532 (581)
.|++|++.+++
T Consensus 308 ~~~~~~~~~~~ 318 (319)
T cd00116 308 ELESLWVKDDS 318 (319)
T ss_pred chhhcccCCCC
Confidence 67777776654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=3.8e-14 Score=136.21 Aligned_cols=135 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred CcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcccCcCCCcEEeccC-CCCcc
Q 035853 238 DSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGINPLLLLKYLVLNI-PSLKH 315 (581)
Q Consensus 238 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~-~~i~~ 315 (581)
.+|..+.+....+.+..+.... .+ +..|+.+++||.|||++|.|+ --|..|..+..|-.|-+.+ |+|+.
T Consensus 60 eVP~~LP~~tveirLdqN~I~~------iP---~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISS------IP---PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCcccCCCcceEEEeccCCccc------CC---hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 3555556777778887777653 45 788888899999999988888 5577788888877776666 78888
Q ss_pred cCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceecCC
Q 035853 316 LPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLHPS 382 (581)
Q Consensus 316 lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~~ 382 (581)
+|+ .+++|..|+-|.+.-|.+.-++. .+..+++|..|.+..|.+. .++. .+..+.+++++.+..+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence 884 47788888888888877766654 4677888888888888776 3443 57777788877765543
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.28 E-value=8.8e-14 Score=133.72 Aligned_cols=253 Identities=17% Similarity=0.172 Sum_probs=144.3
Q ss_pred ceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-cChhhhcccCCcEEEecC-Ccccccchh-hhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH-LPSSLCNLLSLHTLDMRW-SYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l 354 (581)
.-..++|..|.|+.+| ..|+.+++||.|+|+.|.|+. -|..+..|..|..|-+.+ |+|+.+|++ ++.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3456788888888777 457788888888888888884 456788888888777777 588888865 567888888888
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeec----------ccchhchhhhcCCCCCCC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENL----------SSYQSMLSNNLCPLLHLE 422 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~----------~~~~~~l~~~l~~~~~L~ 422 (581)
.-|++.-.....+..+++|..|.+..+. ..+.. .+..+.+++.+.+..+. .......|..++..+...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 7777765555667778888888877776 33333 45556666665554432 001111222222222222
Q ss_pred EEEeecC-------Ccc--cCCccc-------c---cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEec
Q 035853 423 SLKLVDE-------RTI--ALQPSS-------I---VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481 (581)
Q Consensus 423 ~L~l~~~-------~~i--~L~~l~-------l---~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 481 (581)
...+... +.+ .++.+. + ..| .+..+++|++|++++|.++..-..+|.++..++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 2222110 000 000000 0 223 355566666666666666555555566666666666665
Q ss_pred CcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|.+.... ...+.++..|+.|+|.++....--|..+..+.+|.+|.+-.||
T Consensus 308 N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 308 NKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred chHHHHH-HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 5542221 2234555566666666653222234445555556666655554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.8e-11 Score=123.20 Aligned_cols=175 Identities=23% Similarity=0.228 Sum_probs=138.0
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
+..+..|..|..|.|..|.+..+|..++++..|.||+|+.|.+..+|..++.|+ |+.|.+++|+++.+|..++.+..|.
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLA 169 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHH
Confidence 456667777888888888888888888888889999999888888888888776 8888888888888888888888888
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
+||.+.|.+. .+|..++.+.+|+.|.+..+. ..+|.++..| .|..|+++++ ....+|..+.+|++|+.|-|.++
T Consensus 170 ~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScN---kis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 170 HLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCN---KISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred Hhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccC---ceeecchhhhhhhhheeeeeccC
Confidence 9988888876 677788888888888888777 7788888755 4778888887 66778888888888888888874
Q ss_pred CcccCCcccc-cCC-C---CCCCCCccEEEEeecc
Q 035853 430 RTIALQPSSI-VLP-E---YQFPPRLIELSLSNTE 459 (581)
Q Consensus 430 ~~i~L~~l~l-~lp-~---~~~l~~L~~L~L~~~~ 459 (581)
. + +-| . -+...-.++|+..-|.
T Consensus 245 P--------LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 245 P--------LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred C--------CCCChHHHHhccceeeeeeecchhcc
Confidence 4 4 333 2 2334445677777763
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2e-11 Score=122.96 Aligned_cols=167 Identities=26% Similarity=0.392 Sum_probs=122.9
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
...|++.|++..+|..++.+..|..+.|..|.+..+|..+++|..|.+|||+.|.+..+|..++.|+ |+.|-+++|++.
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc
Confidence 4467777777777777777777777777777777777777777777777887777777777777664 777777777765
Q ss_pred CCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 361 AHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 361 ~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.+|..++.+..|..|+.+.|. ..++..++.+.+|+.|.+..+ ....+|+.+..+ .|..|+++++. +
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScNk--------i 223 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCNK--------I 223 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccCc--------e
Confidence 677777777777777777776 677777777777777777776 455666666643 47777777755 6
Q ss_pred -cCC-CCCCCCCccEEEEeeccCC
Q 035853 440 -VLP-EYQFPPRLIELSLSNTELK 461 (581)
Q Consensus 440 -~lp-~~~~l~~L~~L~L~~~~l~ 461 (581)
.+| .+..+..|++|.|.+|.+.
T Consensus 224 s~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 SYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eecchhhhhhhhheeeeeccCCCC
Confidence 777 7777777888877777754
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.5e-10 Score=116.71 Aligned_cols=179 Identities=25% Similarity=0.254 Sum_probs=122.3
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcC-CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLL-LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
......+.++.|++.++.++++|.....+. +|++|++++|.+..+|..++.+++|+.|++++|.+.++|...+.+++|+
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 444555778888888888888887777774 8888888888888887778888888888888888888888777788888
Q ss_pred EeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 351 HLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
.|++++|.+. .+|..++....|+++.+..+. ...+..+.++.++..+.+.++. ...++.
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~---~~~~~~---------------- 249 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK---LEDLPE---------------- 249 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce---eeeccc----------------
Confidence 8888888876 566655566667777776664 4455555555555555544442 111122
Q ss_pred CcccCCcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 430 RTIALQPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 430 ~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
.++.++++++|++++|.++... .++.+.+|+.|+++++.+.
T Consensus 250 -------------~~~~l~~l~~L~~s~n~i~~i~--~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 250 -------------SIGNLSNLETLDLSNNQISSIS--SLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -------------hhccccccceeccccccccccc--cccccCccCEEeccCcccc
Confidence 3445556666666666543322 2666667777777665543
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=8.9e-10 Score=114.51 Aligned_cols=170 Identities=26% Similarity=0.308 Sum_probs=140.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCC-ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK-FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 322 (581)
.+.++.|.+.++..... .+....+. +|+.|+++++.+..+|..+..+++|+.|+++.|++..+|...+.
T Consensus 115 ~~~l~~L~l~~n~i~~i----------~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 115 LTNLTSLDLDNNNITDI----------PPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred ccceeEEecCCcccccC----------ccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 56788998888877542 34445553 99999999999999988899999999999999999999988889
Q ss_pred ccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEe
Q 035853 323 LLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVH 401 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~ 401 (581)
+.+|+.|+++++.+..+|..+.....|+.|.+++|... ..+..+.+++++..+.+..+. ...+..++.+++++.|+++
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence 99999999999999999998877888999999999543 567778899999999866665 5557888899999999999
Q ss_pred eecccchhchhhhcCCCCCCCEEEeec
Q 035853 402 ENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 402 ~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
++. ...++. +....+++.|++++
T Consensus 264 ~n~---i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 264 NNQ---ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccc---cccccc-ccccCccCEEeccC
Confidence 984 333333 66777777777776
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.4e-10 Score=113.40 Aligned_cols=230 Identities=20% Similarity=0.131 Sum_probs=140.5
Q ss_pred cCcCCCcEEeccCCCCcccC--hhhhcccCCcEEEecCCcc---cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCC
Q 035853 298 NPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDMRWSYI---HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLEN 372 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~l---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 372 (581)
.++..||...|.++.+...+ .....|++++.|||+.|-+ ..+-.-...+++|+.|+++.|.+.. |.+ +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~~--s--- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FIS--S--- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--Ccc--c---
Confidence 46788888888888887666 3567788889999988833 3333445678888888888887642 211 0
Q ss_pred CcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC-CCCCCCCcc
Q 035853 373 LNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP-EYQFPPRLI 451 (581)
Q Consensus 373 L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp-~~~~l~~L~ 451 (581)
..+ ..++.|+.|.++.|. .....+...+..+++|+.|.+.++..+ +... ...-+..|+
T Consensus 191 ~~~--------------~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~------~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 191 NTT--------------LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEII------LIKATSTKILQTLQ 249 (505)
T ss_pred cch--------------hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccc------ceecchhhhhhHHh
Confidence 000 134556666666664 112333344445566666666654210 0101 122356778
Q ss_pred EEEEeeccCCC-CCcccccCCCCCCeEEEecCcccCceeeeC-----CCCCCCCcEEEecCCCccccccc--Cccccccc
Q 035853 452 ELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFGRKLVCS-----SGGFPSLKVMHLKSMFWLEEWTM--ENDAMPKL 523 (581)
Q Consensus 452 ~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L 523 (581)
.|+|++|.+.. +.....+.+|.|+.|.++.+.+.....+.. ...||+|+.|++..| .+.+|+. .+..+++|
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nl 328 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENL 328 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchh
Confidence 88888876543 334567788888888888777655443332 456899999999987 4555653 35567888
Q ss_pred ceEeeccCcCCCCC----cccccCCCCccEEEeeCCC
Q 035853 524 ESLIINPCAYLKIL----PEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 524 ~~L~l~~c~~l~~l----p~~l~~l~~L~~L~l~~c~ 556 (581)
+.|.+..++..+.- -..+..+++|..|.=.+|.
T Consensus 329 k~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 329 KHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred hhhhcccccccccccceeEEeeeehhhhhhhcccccC
Confidence 88888877643210 1134555666665555554
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=3.2e-11 Score=117.27 Aligned_cols=287 Identities=17% Similarity=0.111 Sum_probs=156.7
Q ss_pred CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc-cc--cCCCcccCcCCCcEEeccCCC-Ccc--cCh
Q 035853 245 TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV-LD--EYPAGINPLLLLKYLVLNIPS-LKH--LPS 318 (581)
Q Consensus 245 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~-i~~--lp~ 318 (581)
..+|.|.+.+......+ .+ ..+-.+++++..|.+.+|. ++ .+..--..+++|++|++..|. ++. +-.
T Consensus 138 g~lk~LSlrG~r~v~~s----sl---rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDS----SL---RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred cccccccccccccCCcc----hh---hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 35666777666554322 23 4666778888888888776 33 111112356778888887743 441 212
Q ss_pred hhhcccCCcEEEecCC-cccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCC
Q 035853 319 SLCNLLSLHTLDMRWS-YIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSL 395 (581)
Q Consensus 319 ~i~~L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L 395 (581)
-...+++|.+|++++| .+.. +..-...+.+++.+.+.||.-.+ . ..+...-+.+..+
T Consensus 211 la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~---l-----------------e~l~~~~~~~~~i 270 (483)
T KOG4341|consen 211 LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE---L-----------------EALLKAAAYCLEI 270 (483)
T ss_pred HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc---H-----------------HHHHHHhccChHh
Confidence 2345777788888877 4432 11111223333333333322110 0 1111111223333
Q ss_pred CeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C--CCCCCCccEEEEeecc-CCCCCccccc-
Q 035853 396 QTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E--YQFPPRLIELSLSNTE-LKYDPMPALE- 469 (581)
Q Consensus 396 ~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~--~~~l~~L~~L~L~~~~-l~~~~~~~l~- 469 (581)
.++++..|.......+-..-..+..|+.|..+++.. + ..+ | ..++++|+.|.+..|. ++......++
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-------ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-------CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 334433333111111111222334455555554221 1 111 1 2356777888887774 3333333333
Q ss_pred CCCCCCeEEEecCcccCce-eeeCCCCCCCCcEEEecCCCccccc-----ccCcccccccceEeeccCcCCC-CCccccc
Q 035853 470 KLPHLRVLKLKKNSFFGRK-LVCSSGGFPSLKVMHLKSMFWLEEW-----TMENDAMPKLESLIINPCAYLK-ILPEELW 542 (581)
Q Consensus 470 ~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~-~lp~~l~ 542 (581)
+++.|+.+++.++...... +.....++|.|+.|.+++|..++.. ...-.++..|+.+.+++||.+. ..-..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5788888888877653332 3334567888999999888666543 3334567889999999999764 3335677
Q ss_pred CCCCccEEEeeCCCHHHHHHHhh
Q 035853 543 RIKSLTKLELWWPRFELRETLRK 565 (581)
Q Consensus 543 ~l~~L~~L~l~~c~~~~~~~~~~ 565 (581)
.+++|+.+++.+|.....+.++.
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hCcccceeeeechhhhhhhhhHH
Confidence 88899999999999777777776
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=7e-10 Score=99.21 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred CCceeEEEecCcccccCCCccc-CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeec
Q 035853 277 FKFLRLLDLGTIVLDEYPAGIN-PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNF 354 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l 354 (581)
...+|.|+|.++.++.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..++..+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 334555666665555432 333 3455556666666555553 4555556666666665555554444 24555666665
Q ss_pred CCcccC
Q 035853 355 GSITLP 360 (581)
Q Consensus 355 ~~~~~~ 360 (581)
++|.+.
T Consensus 96 ~~N~I~ 101 (175)
T PF14580_consen 96 SNNKIS 101 (175)
T ss_dssp TTS---
T ss_pred cCCcCC
Confidence 555553
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=3.1e-10 Score=111.13 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=135.0
Q ss_pred HHhccCCceeEEEecCcccccCC--CcccCcCCCcEEeccCCCCc---ccChhhhcccCCcEEEecCCcccccchh--hh
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYP--AGINPLLLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRWSYIHHTPDE--IW 344 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~ 344 (581)
.-=++++.||...|.++.+...+ .....|+++|.|+|+.|-+. .+.+-+..|++|+.|+++.|.+....++ -.
T Consensus 115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~ 194 (505)
T KOG3207|consen 115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL 194 (505)
T ss_pred HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh
Confidence 33457888999999999987555 46778999999999998654 4445567899999999999966443322 23
Q ss_pred cCCCCcEeecCCcccCCC-CCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCC
Q 035853 345 KMNELRHLNFGSITLPAH-PGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHL 421 (581)
Q Consensus 345 ~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L 421 (581)
.++.|+.|.++.|.+... +..-...+++|+.|++..+. ........-+..|+.|+++++. ..........+.++.|
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccch
Confidence 578899999998887642 22223456788888888874 2222223345678888888875 1111222445667777
Q ss_pred CEEEeecCCcccCCcccc---cCC-C-----CCCCCCccEEEEeeccCCC-CCcccccCCCCCCeEEEecCcccC
Q 035853 422 ESLKLVDERTIALQPSSI---VLP-E-----YQFPPRLIELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 422 ~~L~l~~~~~i~L~~l~l---~lp-~-----~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+.|.++.++ + .+| . ...+++|++|.+..|++.. .....+..+++|+.|.+..+.+..
T Consensus 274 ~~Lnls~tg--------i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 274 NQLNLSSTG--------IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhccccC--------cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 777777655 3 233 1 2456777777777776532 223334456677777766555543
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=2.5e-10 Score=108.89 Aligned_cols=246 Identities=20% Similarity=0.202 Sum_probs=136.7
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCC---CC-cccChhh-------hcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIP---SL-KHLPSSL-------CNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~---~i-~~lp~~i-------~~L~~L~~L~l~~~ 334 (581)
.+....+..+..++|++|.+. .+-+.+.+.++||..++++- +. .++|+.+ -.+++|++|||+.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 466777888888899988865 23345566678888888762 12 2455443 34456666666666
Q ss_pred ccc--cc---chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeec--ccc
Q 035853 335 YIH--HT---PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENL--SSY 407 (581)
Q Consensus 335 ~l~--~l---p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~ 407 (581)
.++ .+ -.-+.++..|++|.|.+|-+...--..++ ..|++|. ....++.-++||.+....|. +..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA-------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH-------HHhccCCCcceEEEEeecccccccc
Confidence 331 11 12234455555555555543210000010 0111111 12234456678888877776 333
Q ss_pred hhchhhhcCCCCCCCEEEeecCCcccCCcccc---c---CC-CCCCCCCccEEEEeeccCCCCC----cccccCCCCCCe
Q 035853 408 QSMLSNNLCPLLHLESLKLVDERTIALQPSSI---V---LP-EYQFPPRLIELSLSNTELKYDP----MPALEKLPHLRV 476 (581)
Q Consensus 408 ~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l---~---lp-~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~ 476 (581)
...+...+...+.|+.+.+..++ + . +- .+..+++|+.|+|.+|.++... ...+..+|+|+.
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~--------I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNG--------IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred HHHHHHHHHhccccceEEEeccc--------ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 44455566666777777777644 2 0 11 2456777888888777665432 223455677777
Q ss_pred EEEecCcccCceee----eCCCCCCCCcEEEecCCCccc----ccccCcccccccceEeeccCcC
Q 035853 477 LKLKKNSFFGRKLV----CSSGGFPSLKVMHLKSMFWLE----EWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 477 L~L~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
|.+++|.+...... .....+|+|+.|.+.+|..-. .+.......|.|+.|++++|..
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77777766543311 112347777777777763221 1222344577777788877764
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=7.7e-10 Score=103.15 Aligned_cols=83 Identities=27% Similarity=0.215 Sum_probs=36.7
Q ss_pred CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc--cCcccccc
Q 035853 445 QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT--MENDAMPK 522 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~ 522 (581)
..+++|+.|+|++|.++ ....+-.++-|.+.|.|++|.+... .....+.+|..|++++| +++.+. ..++++|.
T Consensus 326 a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L---SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPC 400 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL---SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPC 400 (490)
T ss_pred hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh---hhhHhhhhheecccccc-chhhHHHhcccccccH
Confidence 34444555555544432 1112222344444555544433221 12333445555555554 333332 23556666
Q ss_pred cceEeeccCc
Q 035853 523 LESLIINPCA 532 (581)
Q Consensus 523 L~~L~l~~c~ 532 (581)
|+.+.+.+||
T Consensus 401 LE~l~L~~NP 410 (490)
T KOG1259|consen 401 LETLRLTGNP 410 (490)
T ss_pred HHHHhhcCCC
Confidence 6666666665
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=7.8e-09 Score=92.52 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhc-cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhh-
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICK-WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLC- 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~- 321 (581)
..++|.|.+.++.... .+.+. .+.+|++|++++|.++++. .+..+++|+.|++++|.|+.+++.+.
T Consensus 18 ~~~~~~L~L~~n~I~~-----------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-----------IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccc-----------ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 5567888888887744 23344 5789999999999999876 68889999999999999999987664
Q ss_pred cccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCCC----ccCCCCCCcEeceecCC
Q 035853 322 NLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPGK----CCSSLENLNFISVLHPS 382 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~l~~~~ 382 (581)
.+++|++|++++|.+..+. ..+..+++|++|++.+|.+... +. .+..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEcc
Confidence 6999999999999776654 3467899999999999988632 21 25667888888866655
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.2e-10 Score=108.53 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=34.7
Q ss_pred CcEEEecCCcc--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC----CcchhhhCCCCCCCeEE
Q 035853 326 LHTLDMRWSYI--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS----SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 326 L~~L~l~~~~l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~ 399 (581)
||+|||+...+ ..+..-+..+.+|+.|.+.++.+...+...+.+-.+|+.|+++.|+ ....-.+.+|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44444544433 1222223445555555555544443333334444444444444444 11112234555555555
Q ss_pred Eeeec
Q 035853 400 VHENL 404 (581)
Q Consensus 400 l~~~~ 404 (581)
+++|.
T Consensus 267 lsWc~ 271 (419)
T KOG2120|consen 267 LSWCF 271 (419)
T ss_pred chHhh
Confidence 55554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=1.3e-09 Score=103.97 Aligned_cols=231 Identities=19% Similarity=0.152 Sum_probs=131.2
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccc---c-cCCC-------cccCcCCCcEEeccCCC
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVL---D-EYPA-------GINPLLLLKYLVLNIPS 312 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l---~-~lp~-------~i~~l~~Lr~L~L~~~~ 312 (581)
+..+..+.++++....-.- ... .+.+.+-+.||.-++++--. . .+|. .+-.+++|++|+||.|-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa--~~i---~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAA--RAI---AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred cCceEEEeccCCchhHHHH--HHH---HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 7889999999988753110 223 57788888999999987542 1 4443 33457799999999998
Q ss_pred Cc-c----cChhhhcccCCcEEEecCCcccccchh--------------hhcCCCCcEeecCCcccCCC----CCCccCC
Q 035853 313 LK-H----LPSSLCNLLSLHTLDMRWSYIHHTPDE--------------IWKMNELRHLNFGSITLPAH----PGKCCSS 369 (581)
Q Consensus 313 i~-~----lp~~i~~L~~L~~L~l~~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~----~p~~i~~ 369 (581)
+. . +-.-+..+..|+.|.|.+|.+...... +..-++||++..+.|++... +...+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 76 2 223466789999999999977543221 23345566666666655321 1112333
Q ss_pred CCCCcEeceecCC------CcchhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccccC
Q 035853 370 LENLNFISVLHPS------SCTQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVL 441 (581)
Q Consensus 370 l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~l 441 (581)
.+.|+.+.+..++ ......+.++++|+.|++..|. .....++...
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka--------------------------- 236 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA--------------------------- 236 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH---------------------------
Confidence 3444444444443 1122334444555555554443 1111122222
Q ss_pred CCCCCCCCccEEEEeeccCCCCCcccc-----cCCCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCC
Q 035853 442 PEYQFPPRLIELSLSNTELKYDPMPAL-----EKLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 442 p~~~~l~~L~~L~L~~~~l~~~~~~~l-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~ 508 (581)
+..+++|+.|.++.|.+.......+ ...|+|++|.+.+|.++.+. +.......|.|+.|+|++|.
T Consensus 237 --L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 --LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred --hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 3344566666666666554332222 23577777777777654332 11223346777777777764
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-10 Score=108.29 Aligned_cols=181 Identities=17% Similarity=0.154 Sum_probs=111.3
Q ss_pred CCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEE
Q 035853 348 ELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESL 424 (581)
Q Consensus 348 ~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L 424 (581)
+|++||++...++. .+..-+..+..|+.|.+.+.. ..+...+..-.+|+.|+++.|......++.-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888776653 222234566777888877776 566677777788888888888733344445556777888888
Q ss_pred EeecCCcccCCcccc-cCC-CCC-CCCCccEEEEeecc--CCCCCccc-ccCCCCCCeEEEecCcccCceeeeCCCCCCC
Q 035853 425 KLVDERTIALQPSSI-VLP-EYQ-FPPRLIELSLSNTE--LKYDPMPA-LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498 (581)
Q Consensus 425 ~l~~~~~i~L~~l~l-~lp-~~~-~l~~L~~L~L~~~~--l~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 498 (581)
+++|++.+ - .+. .+. --++|+.|+|++|. +....... ...+|+|..|+|++|..........+..|+.
T Consensus 266 NlsWc~l~------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLF------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred CchHhhcc------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 88885511 0 111 111 13577778887773 22223333 2457888888887765433332334556777
Q ss_pred CcEEEecCCCccc-ccccCcccccccceEeeccCcCC
Q 035853 499 LKVMHLKSMFWLE-EWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 499 L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
|++|.++.|-.+. +--..+..+|+|.+|++.+|-.-
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 7777777775443 12234567777777777777533
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=8.7e-08 Score=104.59 Aligned_cols=88 Identities=25% Similarity=0.353 Sum_probs=41.6
Q ss_pred eeEEEecCcccc-cCCCcccCcCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCC
Q 035853 280 LRLLDLGTIVLD-EYPAGINPLLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 280 Lr~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~ 356 (581)
++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+ ..+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444444444444 44444444444555555444444 4444444444455555444433 23444444444444554444
Q ss_pred cccCCCCCCcc
Q 035853 357 ITLPAHPGKCC 367 (581)
Q Consensus 357 ~~~~~~~p~~i 367 (581)
|.+.+.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 44444444443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=1e-08 Score=95.82 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=61.2
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
.|..|||++|.++.+-.++.-.+.+|.|+++.|++..+- .+..|++|+.|||++|.+.++-..-.++-+.+.|.+++|.
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 455555555555555555555555555555555555443 2455555555555555444443333345555555555554
Q ss_pred cCCCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeee
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~ 403 (581)
+. .-.+++++-+|..|++.++. ..-...+++++.|+.+.+.++
T Consensus 364 iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 364 IE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred Hh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 42 12244455555555555544 223334555555555555444
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=4.2e-07 Score=66.62 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=25.6
Q ss_pred CCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 302 LLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
+|++|++++|.++.+| ..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444444 233444444444444444444443 2344555555554444
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.37 E-value=3.6e-07 Score=67.01 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=50.5
Q ss_pred CceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcc
Q 035853 278 KFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYI 336 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l 336 (581)
++|++|++++|+++.+| ..+..+++|++|++++|.++.+| ..+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57899999999999777 46788999999999999999776 4678999999999998854
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=7.2e-07 Score=97.47 Aligned_cols=101 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred CcEEeccCCCCc-ccChhhhcccCCcEEEecCCcc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
++.|+|+++.+. .+|..++++++|+.|+|++|.+ ..+|..++.+++|+.|++++|.+.+.+|..++++++|+.|++.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 6777777777777777777755 36777777777777777777777777777777777777777766
Q ss_pred CC--CcchhhhCCC-CCCCeEEEeee
Q 035853 381 PS--SCTQDILGRL-PSLQTFRVHEN 403 (581)
Q Consensus 381 ~~--~~~~~~l~~l-~~L~~L~l~~~ 403 (581)
+. +.+|..++.+ .++..+++.++
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 65 4555555432 24445555554
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.33 E-value=2.1e-08 Score=97.98 Aligned_cols=255 Identities=18% Similarity=0.120 Sum_probs=147.0
Q ss_pred CCcEEeccCCC---CcccChhhhcccCCcEEEecCC-cccccc-hhh-hcCCCCcEeecCCcccCC-C-CCCccCCCCCC
Q 035853 302 LLKYLVLNIPS---LKHLPSSLCNLLSLHTLDMRWS-YIHHTP-DEI-WKMNELRHLNFGSITLPA-H-PGKCCSSLENL 373 (581)
Q Consensus 302 ~Lr~L~L~~~~---i~~lp~~i~~L~~L~~L~l~~~-~l~~lp-~~i-~~l~~L~~L~l~~~~~~~-~-~p~~i~~l~~L 373 (581)
.||.|.++++. ...+-....++++++.|.+.+| ++++-- ..+ ..+++|++|++..|.... . +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 34555555543 1133333445666666666666 332211 112 346667777666643321 1 11122345666
Q ss_pred cEeceecCC----CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C--CC
Q 035853 374 NFISVLHPS----SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E--YQ 445 (581)
Q Consensus 374 ~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~--~~ 445 (581)
+.|+++.|. ..+-.-...+.+++++...+|.+...+.+...=+.+.-+.++++..+.. + ... | -.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~-------lTD~~~~~i~~ 291 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ-------LTDEDLWLIAC 291 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc-------ccchHHHHHhh
Confidence 666666666 1222334456667777777776444444443333444444454333221 1 111 1 12
Q ss_pred CCCCccEEEEeeccCCC-CCcccc-cCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEEEecCCCcccc--cccCcccc
Q 035853 446 FPPRLIELSLSNTELKY-DPMPAL-EKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVMHLKSMFWLEE--WTMENDAM 520 (581)
Q Consensus 446 ~l~~L~~L~L~~~~l~~-~~~~~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l 520 (581)
.+..|+.|+.++|...+ .....+ .+.++|+.|.+.+|. +....+..-..+.+.|+.+++..|..... +-..-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 57889999999985432 233333 468999999999886 44444444456789999999998854442 33334579
Q ss_pred cccceEeeccCcCCCCC-----cccccCCCCccEEEeeCCCHHHHHHH
Q 035853 521 PKLESLIINPCAYLKIL-----PEELWRIKSLTKLELWWPRFELRETL 563 (581)
Q Consensus 521 ~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~c~~~~~~~~ 563 (581)
|.|+.|.++.|...... ..+-.....|+.+++++||....+.+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH
Confidence 99999999999876543 33344567899999999995443333
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.2e-07 Score=98.91 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=59.4
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~ 358 (581)
.+..+.+..+.+.+.-..++.+++|.+|++.+|.|..+...+..+++|++|++++|.|..+.. +..++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc
Confidence 333444444444443333455555555555555555554335555555555555555555532 4445555555555555
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
+. -..++..+++|+.+++.++. ..+... +..+.+++.+.+.++.
T Consensus 152 i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 152 IS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 53 11233345555555555554 111111 3445555555555553
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.4e-07 Score=98.28 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=81.7
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcE
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRH 351 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 351 (581)
..+..+++|..|++.++.+..+...+..+++|++|++++|.|+.+. .+..+..|+.|++.+|.+..++. +..+++|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccC-Cccchhhhc
Confidence 3466778888888888888877655778888888888888888775 56777888888888887777654 555888888
Q ss_pred eecCCcccCCCCCCc-cCCCCCCcEeceecCC
Q 035853 352 LNFGSITLPAHPGKC-CSSLENLNFISVLHPS 382 (581)
Q Consensus 352 L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~ 382 (581)
+++++|.+.. +... ...+.+++.+.+.++.
T Consensus 167 l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVD-IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhh-hhhhhhhhccchHHHhccCCc
Confidence 8888888763 2221 4677778888877766
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=6.7e-07 Score=83.83 Aligned_cols=78 Identities=23% Similarity=0.246 Sum_probs=40.0
Q ss_pred ceeEEEecCcccccCC--Cccc-CcCCCcEEeccCCCCc---ccChhhhcccCCcEEEecCCcc----cccchhhhcCCC
Q 035853 279 FLRLLDLGTIVLDEYP--AGIN-PLLLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRWSYI----HHTPDEIWKMNE 348 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp--~~i~-~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~l----~~lp~~i~~l~~ 348 (581)
.+..|.+.++.+...- ..|+ ...+++.|+|.+|.|+ ++-.-+.+++.|++|+++.|.+ +.+| ..+.+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~n 122 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKN 122 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccc
Confidence 3445556666554211 1122 3456667777776665 3333345666666666666633 2333 13445
Q ss_pred CcEeecCCccc
Q 035853 349 LRHLNFGSITL 359 (581)
Q Consensus 349 L~~L~l~~~~~ 359 (581)
|+.|-+.+..+
T Consensus 123 l~~lVLNgT~L 133 (418)
T KOG2982|consen 123 LRVLVLNGTGL 133 (418)
T ss_pred eEEEEEcCCCC
Confidence 66665555444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=4.5e-06 Score=56.12 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=21.5
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP 340 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp 340 (581)
+|++|++++|.|+.+|+.+++|++|++|++++|.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666665555566666666666666555443
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=3.4e-06 Score=79.24 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=122.2
Q ss_pred CCCcEEeccCCCCcccC--hhh-hcccCCcEEEecCCcccc---cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 301 LLLKYLVLNIPSLKHLP--SSL-CNLLSLHTLDMRWSYIHH---TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp--~~i-~~L~~L~~L~l~~~~l~~---lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
.-+..|.+.++.|...- ..+ ...++++.|||.+|.+.. +-.-+.+||.|+.|+++.|.+...+...-..+.+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 34556666777665332 222 357889999999997643 334457899999999999987542221112456788
Q ss_pred EeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCcc
Q 035853 375 FISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLI 451 (581)
Q Consensus 375 ~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~ 451 (581)
+|-+.+.. ...-..+..+|.+++|+++.+. ++.+.+..+. . -..-+.++
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~----------------~rq~n~Dd~c--------~----e~~s~~v~ 176 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS----------------LRQLNLDDNC--------I----EDWSTEVL 176 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch----------------hhhhcccccc--------c----cccchhhh
Confidence 88777766 4455566777777777777663 2222222100 0 00011223
Q ss_pred EEEEeeccCCC--CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc--cCcccccccceEe
Q 035853 452 ELSLSNTELKY--DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT--MENDAMPKLESLI 527 (581)
Q Consensus 452 ~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~--~~~~~l~~L~~L~ 527 (581)
+|....|.... .....-..+|++..+.+..|.+...........||.+-.|.+..+ ++.+|. ..+..||.|..|.
T Consensus 177 tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 177 TLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred hhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheee
Confidence 33333331100 000011124566666666555544433334555666666666654 455553 2355677777777
Q ss_pred eccCcCCCCCcc------cccCCCCccEEEee
Q 035853 528 INPCAYLKILPE------ELWRIKSLTKLELW 553 (581)
Q Consensus 528 l~~c~~l~~lp~------~l~~l~~L~~L~l~ 553 (581)
+.++|....+-. .++++++++.|+=+
T Consensus 256 v~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 256 VSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 777776544321 35566677666533
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=7.2e-06 Score=55.14 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.9
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++|++|++++|+++.+|..+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4799999999999999988999999999999999998765
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=1.9e-06 Score=90.10 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=63.6
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~~ 381 (581)
|...+.++|.+..+-.++.-++.|+.|||++|++.... .+..+++|+|||+++|.+. .+|. +...+. |+.|.+.++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeeccc
Confidence 44555566666666667777778888888888776665 5777788888888887775 4442 222233 677766666
Q ss_pred CCcchhhhCCCCCCCeEEEeee
Q 035853 382 SSCTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~~ 403 (581)
.......+.++.+|+.|+++.|
T Consensus 243 ~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHh
Confidence 5444455666677777777666
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=2.1e-05 Score=85.98 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=75.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~ 321 (581)
+|.||+|.+.+..... ... ...+.++++|+.||+++++++.+ .++++|++|+.|.+++-.++.-. ..+.
T Consensus 147 LPsL~sL~i~~~~~~~-----~dF---~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDN-----DDF---SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred CcccceEEecCceecc-----hhH---HHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 7888888888766543 222 46677888888888888888766 57888888888888876665322 4566
Q ss_pred cccCCcEEEecCCcccccchhh-------hcCCCCcEeecCCcccCC
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-------WKMNELRHLNFGSITLPA 361 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-------~~l~~L~~L~l~~~~~~~ 361 (581)
+|++|++||+|.......+.-+ ..||+||.||.+++.+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7888888888877333322111 237788888888776654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=3.5e-05 Score=77.72 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=82.6
Q ss_pred HhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCC-CcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCc
Q 035853 273 ICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPS-LKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELR 350 (581)
Q Consensus 273 ~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~ 350 (581)
-+..+++++.|++++|.++.+| .+. .+|+.|.+++|. ++.+|..+ ..+|+.|++++| .+..+|.. |+
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-~LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-VLP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-CCC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cc
Confidence 3555788999999999888887 232 368999998854 66777665 368999999998 78888764 55
Q ss_pred EeecCCccc--CCCCCCccCCCCCCcEeceecCCCcchhhhC-CC-CCCCeEEEeeecccchhchhhhcCCCCCCCEEEe
Q 035853 351 HLNFGSITL--PAHPGKCCSSLENLNFISVLHPSSCTQDILG-RL-PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKL 426 (581)
Q Consensus 351 ~L~l~~~~~--~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~-~l-~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l 426 (581)
.|++.++.. .+.+|. +|+.|.+..........+. .+ ++|+.|.+++|. .. .+|..+. .+|+.|.+
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~--~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCS--NI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCC--cc-cCccccc--ccCcEEEe
Confidence 666654433 223443 4556654332200001111 12 578888888875 22 2333332 47778877
Q ss_pred ec
Q 035853 427 VD 428 (581)
Q Consensus 427 ~~ 428 (581)
+.
T Consensus 185 s~ 186 (426)
T PRK15386 185 HI 186 (426)
T ss_pred cc
Confidence 65
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.79 E-value=4.5e-06 Score=77.43 Aligned_cols=251 Identities=19% Similarity=0.155 Sum_probs=147.0
Q ss_pred HHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCC---Cc-ccCh-------hhhcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPS---LK-HLPS-------SLCNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~---i~-~lp~-------~i~~L~~L~~L~l~~~ 334 (581)
...+..+..+..++|+||.+. .+...|.+-++|+..+++.-- .. ++|+ .+-+|++|++.+|+.|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 345556888999999999876 344566677889988888632 11 3443 3457788888888888
Q ss_pred cc-cccc----hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeec--ccc
Q 035853 335 YI-HHTP----DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENL--SSY 407 (581)
Q Consensus 335 ~l-~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~ 407 (581)
.+ .+.| +.|++-+.|.||.+++|.+...--..|+ +.|++|. .-....+-|.|+...+..+. +..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig--kal~~la-------~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG--KALFHLA-------YNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH--HHHHHHH-------HHhhhccCCCceEEEeccchhccCc
Confidence 33 2233 3456777788888877755311111121 1122221 11223455667777776665 112
Q ss_pred hhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcc----cccCCCCCCeEEEe
Q 035853 408 QSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMP----ALEKLPHLRVLKLK 480 (581)
Q Consensus 408 ~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~ 480 (581)
.......+..-.+|+.+.+..++ +++-.+ .+- .+..+.+|+.|+|+.|.++..... .+...+.|+.|.+.
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNg---Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNG---IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecC---cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 22222334444577777777655 000001 111 234678899999999877654333 24456778999998
Q ss_pred cCcccCceee-----eCCCCCCCCcEEEecCCCcccc------cc-cCcccccccceEeeccCcC
Q 035853 481 KNSFFGRKLV-----CSSGGFPSLKVMHLKSMFWLEE------WT-MENDAMPKLESLIINPCAY 533 (581)
Q Consensus 481 ~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~------l~-~~~~~l~~L~~L~l~~c~~ 533 (581)
+|-+...... +.-..+|+|..|...++..-.. ++ ...+++|-|..|.+.+|..
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 7766544321 1223478888888877643221 11 2346789999999888864
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=7e-06 Score=89.64 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=79.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~ 321 (581)
..+|+.|.+.|.... ...| + ...-..+|.||.|.+.+-.+. .+..-..++++|+.||+++++++.+ ..++
T Consensus 121 r~nL~~LdI~G~~~~-s~~W---~---~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF-SNGW---P---KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred HHhhhhcCccccchh-hccH---H---HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 678888888875543 3344 2 355567888888888887754 3334455778899999999888877 6888
Q ss_pred cccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccC
Q 035853 322 NLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~ 360 (581)
+|++||+|.+++-.+..-+ ..+.+|++|++||+|.....
T Consensus 193 ~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 9999999888776554433 34678889999988876554
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1e-06 Score=91.93 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=78.2
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
...+.-++.|+.|+|++|++.++- .+..|++|+.|||++|.+..+|.- ...+. |+.|++++|.++++- +|.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhhhh
Confidence 456666778888888888877554 677788888888888888777632 22333 888888888777774 47888888
Q ss_pred cEeecCCcccCCCCC-CccCCCCCCcEeceecCC
Q 035853 350 RHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 382 (581)
++||+++|.+.+.-- ..++.|..|..|++.++.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888887764211 235566777788877776
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.67 E-value=4.3e-06 Score=89.34 Aligned_cols=188 Identities=22% Similarity=0.142 Sum_probs=92.4
Q ss_pred CCCCcEeecCCcc-cCCCCCCcc-CCCCCCcEeceecCC----CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC
Q 035853 346 MNELRHLNFGSIT-LPAHPGKCC-SSLENLNFISVLHPS----SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL 419 (581)
Q Consensus 346 l~~L~~L~l~~~~-~~~~~p~~i-~~l~~L~~L~l~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~ 419 (581)
+.+|++|+++++. +....-..+ ..+++|++|.+..|. ..+......+++|++|++++|.......+.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 4555555555554 221111111 124556666544444 2334445567778888888876322333444455566
Q ss_pred CCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccCCC---CCcccccCCCCCCeEEEecCcccCceeeeCCCCC
Q 035853 420 HLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTELKY---DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGF 496 (581)
Q Consensus 420 ~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l~~---~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 496 (581)
+|+.|.+.. ...++.++.+.+..+.... ...-....+++++.+.+..+.......
T Consensus 322 ~l~~l~~~~---------------~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 379 (482)
T KOG1947|consen 322 NLRELKLLS---------------LNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL------- 379 (482)
T ss_pred chhhhhhhh---------------cCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-------
Confidence 666666554 2235556666665553211 112235567777777777655222221
Q ss_pred CCCcEEEecCCCcc-cccccCcccccccceEeeccCcCCCCCc-ccccC-CCCccEEEeeCCCHHH
Q 035853 497 PSLKVMHLKSMFWL-EEWTMENDAMPKLESLIINPCAYLKILP-EELWR-IKSLTKLELWWPRFEL 559 (581)
Q Consensus 497 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~-l~~L~~L~l~~c~~~~ 559 (581)
.+.+.+|+.+ ..+.......+.++.|.+..|.....-- ..... +.+++.+.+.+|+...
T Consensus 380 ----~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 380 ----ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred ----HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 2233333333 2222222333337777777776543211 11111 5566777777776433
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00011 Score=74.13 Aligned_cols=135 Identities=14% Similarity=0.141 Sum_probs=87.2
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEe
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFI 376 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 376 (581)
..+.++++|++++|.++.+|. -..+|++|.+++| .+..+|..+. ++|++|++++|.....+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceE
Confidence 346899999999999999982 2457999999998 8888887653 5899999999854445664 45666
Q ss_pred ceecCCCcchhhhCCC-CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEE
Q 035853 377 SVLHPSSCTQDILGRL-PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIEL 453 (581)
Q Consensus 377 ~l~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L 453 (581)
.+...... .+..+ ++|+.|.+.+.........+.. -.++|+.|.++++. . .+| .+ ..+|+.|
T Consensus 118 ~L~~n~~~---~L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~--------~i~LP~~L--P~SLk~L 182 (426)
T PRK15386 118 EIKGSATD---SIKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCS--------NIILPEKL--PESLQSI 182 (426)
T ss_pred EeCCCCCc---ccccCcchHhheeccccccccccccccc--cCCcccEEEecCCC--------cccCcccc--cccCcEE
Confidence 65443311 12223 3567777754320011111111 12589999998854 2 344 33 2688899
Q ss_pred EEeec
Q 035853 454 SLSNT 458 (581)
Q Consensus 454 ~L~~~ 458 (581)
+++.+
T Consensus 183 ~ls~n 187 (426)
T PRK15386 183 TLHIE 187 (426)
T ss_pred Eeccc
Confidence 88765
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.63 E-value=3.2e-06 Score=70.35 Aligned_cols=101 Identities=22% Similarity=0.247 Sum_probs=58.6
Q ss_pred ceeEEEecCcccc---cCCCcccCcCCCcEEeccCCCCcccChhhhc-ccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLD---EYPAGINPLLLLKYLVLNIPSLKHLPSSLCN-LLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
.+-.++|++|.+. ..+..+....+|...+|++|.++..|+.+.. .+.+++|++.+|.+.++|..+..++.||.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 3445666666544 2233344455666666666666666665543 34666666666666666666666666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
+.|.+. ..|..+..|.+|-.|+...
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCC
Confidence 666654 4555554455555554333
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.48 E-value=1.9e-05 Score=73.42 Aligned_cols=230 Identities=16% Similarity=0.085 Sum_probs=133.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc----cCC-------CcccCcCCCcEEeccCCC
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD----EYP-------AGINPLLLLKYLVLNIPS 312 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~----~lp-------~~i~~l~~Lr~L~L~~~~ 312 (581)
+..+..+.++++...+ ...+.-...+.+-++|++.+++.-... .+| +.+-+|++|+..+|+.|.
T Consensus 29 ~d~~~evdLSGNtigt-----EA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTIGT-----EAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcccH-----HHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 7889999999998754 111111456677889999998875422 333 345579999999999998
Q ss_pred Cc-ccChh----hhcccCCcEEEecCCcccccchh--------------hhcCCCCcEeecCCcccCCCCCC-----ccC
Q 035853 313 LK-HLPSS----LCNLLSLHTLDMRWSYIHHTPDE--------------IWKMNELRHLNFGSITLPAHPGK-----CCS 368 (581)
Q Consensus 313 i~-~lp~~----i~~L~~L~~L~l~~~~l~~lp~~--------------i~~l~~L~~L~l~~~~~~~~~p~-----~i~ 368 (581)
+. ..|+. |+.-..|.+|.+++|.++.+..+ ...-|.|+....+.|++.. .|. .+.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~ 182 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLE 182 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHH
Confidence 87 55544 56778999999999977554321 2235667777777776642 111 112
Q ss_pred CCCCCcEeceecCC--Cc-----chhhhCCCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 369 SLENLNFISVLHPS--SC-----TQDILGRLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 369 ~l~~L~~L~l~~~~--~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.-.+|+++.+..+. .. ....+..+.+|+.|++..+. ......+...++.
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~---------------------- 240 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE---------------------- 240 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc----------------------
Confidence 22345555555444 11 11233445555555555553 0111112222222
Q ss_pred cCCCCCCCCCccEEEEeeccCCCCCccc----cc--CCCCCCeEEEecCcccCceeee------CCCCCCCCcEEEecCC
Q 035853 440 VLPEYQFPPRLIELSLSNTELKYDPMPA----LE--KLPHLRVLKLKKNSFFGRKLVC------SSGGFPSLKVMHLKSM 507 (581)
Q Consensus 440 ~lp~~~~l~~L~~L~L~~~~l~~~~~~~----l~--~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~l~~~ 507 (581)
| +.|+.|.+..|-++...... +. ..|+|..|...+|...+..+.. ..+.+|-|..|.+.+|
T Consensus 241 ---W----~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 241 ---W----NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ---c----chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 2 33666667777554433222 22 2577788877777655443322 2356777888887776
Q ss_pred C
Q 035853 508 F 508 (581)
Q Consensus 508 ~ 508 (581)
.
T Consensus 314 r 314 (388)
T COG5238 314 R 314 (388)
T ss_pred c
Confidence 3
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=1.8e-05 Score=66.00 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred HHhccCCceeEEEecCcccccCCCcccC-cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINP-LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
..+.+...|...+|++|.++++|+.+.. .+.++.|++++|.|..+|.++..++.|+.|+++.|.+...|.-+..|.+|-
T Consensus 47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 4566677788888888888888876654 347888888888888888888888888888888888888888787788888
Q ss_pred EeecCCcccC
Q 035853 351 HLNFGSITLP 360 (581)
Q Consensus 351 ~L~l~~~~~~ 360 (581)
.|+.-+|...
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 8877666554
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00043 Score=61.93 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=45.0
Q ss_pred eEEEecCcccccCCCccc-CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhc-CCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGIN-PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWK-MNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~-l~~L~~L~l~~~~ 358 (581)
+.++|.+.++...-. ++ -+.+...++|++|.+..++ .+..++.|.+|.+.+|.+..+...+.. +++|..|.+.+|.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 455555555432211 11 1234556777777766554 455667777777777777666555543 5567777777666
Q ss_pred cC
Q 035853 359 LP 360 (581)
Q Consensus 359 ~~ 360 (581)
+.
T Consensus 100 i~ 101 (233)
T KOG1644|consen 100 IQ 101 (233)
T ss_pred hh
Confidence 54
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00061 Score=60.95 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=69.3
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc-ccCCcEEEecCCcccccch--hhhcCCCCcEeecC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN-LLSLHTLDMRWSYIHHTPD--EIWKMNELRHLNFG 355 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 355 (581)
..-.+||++|.+..++ .+..++.|..|.+++|+|+.+-+.+.. +++|++|.+.+|++.++-+ .+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4567888888876554 466788888888888888877666654 5678888888887665542 25567888888777
Q ss_pred CcccCCCCC---CccCCCCCCcEeceecCC
Q 035853 356 SITLPAHPG---KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 356 ~~~~~~~~p---~~i~~l~~L~~L~l~~~~ 382 (581)
+|.....-- ..+..+++|++|+...+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 776543111 124455566666655544
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.02 E-value=4.7e-05 Score=81.35 Aligned_cols=217 Identities=21% Similarity=0.120 Sum_probs=103.5
Q ss_pred ccCCcEEEecCC-cccc--cchhhhcCCCCcEeecCCc-ccCCCC----CCccCCCCCCcEeceecCC---CcchhhhC-
Q 035853 323 LLSLHTLDMRWS-YIHH--TPDEIWKMNELRHLNFGSI-TLPAHP----GKCCSSLENLNFISVLHPS---SCTQDILG- 390 (581)
Q Consensus 323 L~~L~~L~l~~~-~l~~--lp~~i~~l~~L~~L~l~~~-~~~~~~----p~~i~~l~~L~~L~l~~~~---~~~~~~l~- 390 (581)
+++|+.|.+..| .+.. +-.....+++|+.|+++++ ...... ......+.+|+.|++..+. ......+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666666 4443 2233455666777766652 111111 1123345677777777765 22233333
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCcccc
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPAL 468 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l 468 (581)
.+++|+.|.+.+|.......+......+++|++|+++++..+ .- .+. ....+++|+.|.+..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~-----~d~~l~~~~~~c~~l~~l~~~~~~--------- 332 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL-----TDSGLEALLKNCPNLRELKLLSLN--------- 332 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc-----hHHHHHHHHHhCcchhhhhhhhcC---------
Confidence 377888888776752233344444455666666666653210 00 011 11224444443332221
Q ss_pred cCCCCCCeEEEecCcccC--ceeeeCCCCCCCCcEEEecCCCcccccccCcccccccc-eEeeccCcCC-CCCcccccCC
Q 035853 469 EKLPHLRVLKLKKNSFFG--RKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLE-SLIINPCAYL-KILPEELWRI 544 (581)
Q Consensus 469 ~~l~~L~~L~L~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~-~L~l~~c~~l-~~lp~~l~~l 544 (581)
.++.++.+.+.++.... .........+++|+.+.+..+. . .... .+.+.+|+.+ ..+.......
T Consensus 333 -~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~----------~~~~~~~~l~gc~~l~~~l~~~~~~~ 400 (482)
T KOG1947|consen 333 -GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-I----------SDLGLELSLRGCPNLTESLELRLCRS 400 (482)
T ss_pred -CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-c----------cCcchHHHhcCCcccchHHHHHhccC
Confidence 13334444433221111 1112223445555555555543 2 1222 4666677766 3433333344
Q ss_pred CCccEEEeeCCCHHHHHHHhh
Q 035853 545 KSLTKLELWWPRFELRETLRK 565 (581)
Q Consensus 545 ~~L~~L~l~~c~~~~~~~~~~ 565 (581)
.+++.|.+..|.......++.
T Consensus 401 ~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 401 DSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred CccceEecccCccccccchHH
Confidence 448999999998544444433
No 66
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.92 E-value=0.0063 Score=70.64 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=105.4
Q ss_pred CceEEEEEEcCCChh--H-HHHHHhhCCCCCCCCEEEEeCCCh--------------------------HHHHHhc-ccc
Q 035853 14 NKRYLIVFEDVISSD--V-WDYIGKALPDHQNGSRVLAMLTCS--------------------------DEIFSLC-RLE 63 (581)
Q Consensus 14 ~kr~LlVLDDv~~~~--~-~~~l~~~~~~~~~gs~iivTtr~~--------------------------~~~~~Lf-~~f 63 (581)
+.+++|||||+...+ . .+.+...++....+-++|||||.. +|+-++| ...
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999996642 2 233443344445567888999871 7777777 433
Q ss_pred cCccccCCCCChh-hHHhhcCCcchhhhhhccc--c-ce--ecccccccc----c---ccc-eeccccCchhhhHHHHhh
Q 035853 64 NGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN--S-LV--ENMRLTWRI----Q---KWP-LLFSIVELPQHLKLCCLY 129 (581)
Q Consensus 64 ~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~--t-~~--~~~~~~~~~----~---~~~-L~~sY~~L~~~lk~cFl~ 129 (581)
+.. .+.+.. ++.+.|+|.|+++..++.. . -. ... .+.+ . ... ..--|+.||++.+..++.
T Consensus 200 ~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS--ARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh--hHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 321 113445 9999999999999877754 1 00 000 1111 0 111 122378999999999999
Q ss_pred hcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHHHhc
Q 035853 130 LSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLVLVA 203 (581)
Q Consensus 130 ~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~~i~ 203 (581)
.|+++ .|+.+ +...-. | .+.+...+++|.+.+++...... .+ ..|+.|++++++.+...
T Consensus 274 ~a~~~---~~~~~-l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 274 CSVLR---SMNDA-LIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred hcccc---cCCHH-HHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 99987 33432 222111 1 12357889999999997543211 11 35788999999988764
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.00062 Score=63.52 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=49.8
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCC--CCc-ccChhhhcccCCcEEEecCCcccc---cchhhhcCCC
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIP--SLK-HLPSSLCNLLSLHTLDMRWSYIHH---TPDEIWKMNE 348 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~l~~---lp~~i~~l~~ 348 (581)
-.+..|+.|.+.++.++.+- .+..|++|++|.++.| ++. .++....++++|++|++++|++.. ++ .+..+++
T Consensus 40 d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34445555555555554332 3445677777777777 443 555555666777777777775443 22 2455666
Q ss_pred CcEeecCCcccC
Q 035853 349 LRHLNFGSITLP 360 (581)
Q Consensus 349 L~~L~l~~~~~~ 360 (581)
|..|++..|...
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 677777666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00025 Score=66.34 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~ 321 (581)
..+++.|.+.++...+ ..+..+|+.|+||.|+-|+++.+- .+..|++|+.|+|+.|.|..+- .-+.
T Consensus 18 l~~vkKLNcwg~~L~D-----------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLk 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-----------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLK 85 (388)
T ss_pred HHHhhhhcccCCCccH-----------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHh
Confidence 3455666666666533 466677888888888877776553 4667777888888777776543 2355
Q ss_pred cccCCcEEEecCC-cccccch-----hhhcCCCCcEee
Q 035853 322 NLLSLHTLDMRWS-YIHHTPD-----EIWKMNELRHLN 353 (581)
Q Consensus 322 ~L~~L~~L~l~~~-~l~~lp~-----~i~~l~~L~~L~ 353 (581)
++++|++|-|..| .-.+-+. -+..|++|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6777777777666 2222221 134566666664
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.23 E-value=0.0017 Score=60.60 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=65.6
Q ss_pred CCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCC--cc-cccchhhhcCCCCcEeecCCcccCCCCCC---c
Q 035853 293 YPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS--YI-HHTPDEIWKMNELRHLNFGSITLPAHPGK---C 366 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~---~ 366 (581)
+..-.-.+..|.+|++.+..++.+- .+-.|++|++|.++.| .+ ..++.-..++++|++|++++|.+. .+. .
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccch
Confidence 3333344556667777666554332 2336889999999988 33 445555566799999999999884 232 3
Q ss_pred cCCCCCCcEeceecCC-C----cchhhhCCCCCCCeEEEeee
Q 035853 367 CSSLENLNFISVLHPS-S----CTQDILGRLPSLQTFRVHEN 403 (581)
Q Consensus 367 i~~l~~L~~L~l~~~~-~----~~~~~l~~l~~L~~L~l~~~ 403 (581)
...+.+|..|+++.|. . .--..+.-+++|+.|+-...
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 4556667777777776 1 11122334556665554443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.0003 Score=65.89 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=80.3
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch--hhhcCCCCcEe
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD--EIWKMNELRHL 352 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L 352 (581)
+.+.+.+.|++.||.+..+. -..+++.|++|.|+-|+|+.+. .+..|.+|++|.|+.|.|..+.. .+.++++||.|
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34567788999999987542 2457889999999999999885 68899999999999997766653 46788999999
Q ss_pred ecCCcccCCCCCCc-----cCCCCCCcEeceecCC
Q 035853 353 NFGSITLPAHPGKC-----CSSLENLNFISVLHPS 382 (581)
Q Consensus 353 ~l~~~~~~~~~p~~-----i~~l~~L~~L~l~~~~ 382 (581)
-|..|.-.+.-+.. +.-|++|+.|+-..+.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~Vt 128 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVT 128 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCcccc
Confidence 88877666544433 4567777777755444
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0035 Score=34.97 Aligned_cols=17 Identities=47% Similarity=0.651 Sum_probs=6.9
Q ss_pred CcEEeccCCCCcccChh
Q 035853 303 LKYLVLNIPSLKHLPSS 319 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~ 319 (581)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.015 Score=32.43 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=18.5
Q ss_pred ceeEEEecCcccccCCCcccCc
Q 035853 279 FLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
+|++|++++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887653
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.06 E-value=0.0025 Score=58.36 Aligned_cols=89 Identities=17% Similarity=0.052 Sum_probs=69.1
Q ss_pred HHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcE
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRH 351 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~ 351 (581)
..+..++..++||++.+++..+-..+..+..|..|+++.+.+..+|+.++.+..+..+++..|.....|.+.++.+.+++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence 44556677788888888776666667777788888888888888888888888888888888888888888888888888
Q ss_pred eecCCcccC
Q 035853 352 LNFGSITLP 360 (581)
Q Consensus 352 L~l~~~~~~ 360 (581)
+++-++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 877776654
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.60 E-value=0.0085 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=16.0
Q ss_pred CccEEEEeeccCCCCCcccccCCCCCCeEEEecC
Q 035853 449 RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKN 482 (581)
Q Consensus 449 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 482 (581)
.++.++-+++.+......-+.+++.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444444454444444444444555555555444
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.37 E-value=0.056 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=4.2
Q ss_pred CcEEEecCCcccc
Q 035853 326 LHTLDMRWSYIHH 338 (581)
Q Consensus 326 L~~L~l~~~~l~~ 338 (581)
|++|++++|.+.+
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.26 E-value=0.056 Score=27.92 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=6.4
Q ss_pred CCcEEeccCCCCcccC
Q 035853 302 LLKYLVLNIPSLKHLP 317 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp 317 (581)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 77
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.22 E-value=0.22 Score=42.18 Aligned_cols=81 Identities=11% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNE 348 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~ 348 (581)
..|..+.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+.. .+..++.. +..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555666666553 333333 23455555666666553 44433 2344555566666644 33333332 233555
Q ss_pred CcEeecC
Q 035853 349 LRHLNFG 355 (581)
Q Consensus 349 L~~L~l~ 355 (581)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 6666554
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.60 E-value=0.011 Score=53.23 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=60.4
Q ss_pred CCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC--cccccccceEeeccCcCCCCC-cccccCCCCccEE
Q 035853 474 LRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME--NDAMPKLESLIINPCAYLKIL-PEELWRIKSLTKL 550 (581)
Q Consensus 474 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L 550 (581)
++.++-+++.+..+.+ ..+..+++++.|.+.+|..+..|... -+-.|+|+.|+|++|+.+++- -..+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGl-e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGL-EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHH-HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3455555555544432 23567889999999999999877532 346899999999999988642 2467789999999
Q ss_pred EeeCCC
Q 035853 551 ELWWPR 556 (581)
Q Consensus 551 ~l~~c~ 556 (581)
.+.+-|
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 999877
No 79
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.55 E-value=0.7 Score=50.81 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=104.1
Q ss_pred HHHHHHHHhc--CceEEEEEEcCCCh---hHHHHHHhhCCCCCCCCEEEEeCCC--------------------------
Q 035853 4 RKTALHDYLR--NKRYLIVFEDVISS---DVWDYIGKALPDHQNGSRVLAMLTC-------------------------- 52 (581)
Q Consensus 4 l~~~l~~~L~--~kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gs~iivTtr~-------------------------- 52 (581)
+...+...|. .+...+||||-.-. .--+.+.--+.....+=..|||||+
T Consensus 116 l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~ 195 (894)
T COG2909 116 LLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFD 195 (894)
T ss_pred HHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCC
Confidence 3344444444 46899999996443 2233444444555567799999998
Q ss_pred hHHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-----c------cee---ccccccccc-ccceecc
Q 035853 53 SDEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-----S------LVE---NMRLTWRIQ-KWPLLFS 115 (581)
Q Consensus 53 ~~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-----t------~~~---~~~~~~~~~-~~~L~~s 115 (581)
++|+-++| ..-+.. .+ +.-. .+.+...|-+-|+..++=. + ... +. .++.- -. =
T Consensus 196 ~eE~~~fl~~~~~l~---Ld-~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~--l~dYL~ee----V 265 (894)
T COG2909 196 TEEAAAFLNDRGSLP---LD-AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASH--LSDYLVEE----V 265 (894)
T ss_pred hHHHHHHHHHcCCCC---CC-hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHH--HHHHHHHH----H
Confidence 17888877 432211 11 2222 5666666655555433222 1 000 11 11110 11 2
Q ss_pred ccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHH
Q 035853 116 IVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFIT 195 (581)
Q Consensus 116 Y~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli 195 (581)
+|.||+++|.-.+-||+++.= -++|+.... -++-|...+++|.+++++-..-++.+ ..|+.|-+.
T Consensus 266 ld~Lp~~l~~FLl~~svl~~f----~~eL~~~Lt--------g~~ng~amLe~L~~~gLFl~~Ldd~~---~WfryH~LF 330 (894)
T COG2909 266 LDRLPPELRDFLLQTSVLSRF----NDELCNALT--------GEENGQAMLEELERRGLFLQRLDDEG---QWFRYHHLF 330 (894)
T ss_pred HhcCCHHHHHHHHHHHhHHHh----hHHHHHHHh--------cCCcHHHHHHHHHhCCCceeeecCCC---ceeehhHHH
Confidence 578999999988889988642 234444333 23557889999999998775443222 679999999
Q ss_pred HHHHHHhccc
Q 035853 196 RGMLVLVAEF 205 (581)
Q Consensus 196 ~dl~~~i~~~ 205 (581)
.|+-+.--..
T Consensus 331 aeFL~~r~~~ 340 (894)
T COG2909 331 AEFLRQRLQR 340 (894)
T ss_pred HHHHHhhhcc
Confidence 9987755443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.36 E-value=0.0091 Score=54.76 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=76.2
Q ss_pred CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCc
Q 035853 295 AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLN 374 (581)
Q Consensus 295 ~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 374 (581)
..|......+.||++.+++..+-..++.+..|..|+++.+.+..+|...+.+..++++++..|... ..|.+.+..+.++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 456677888999999999888888899999999999999999999999999999999999888776 7898999999988
Q ss_pred EeceecCC
Q 035853 375 FISVLHPS 382 (581)
Q Consensus 375 ~L~l~~~~ 382 (581)
.++.-++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 88766554
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.89 E-value=0.37 Score=27.90 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=9.0
Q ss_pred CCCcEEeccCCCCcccCh
Q 035853 301 LLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~ 318 (581)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.89 E-value=0.37 Score=27.90 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=9.0
Q ss_pred CCCcEEeccCCCCcccCh
Q 035853 301 LLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~ 318 (581)
++|++|+|++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.73 E-value=1.1 Score=37.84 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~ 321 (581)
+++++.+.+... .. ... ...|..++.|+.+.+.++ +..++ ..+.++..|+++.+.. .+..++ ..+.
T Consensus 11 ~~~l~~i~~~~~-~~------~I~---~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 11 CSNLESITFPNT-IK------KIG---ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp -TT--EEEETST---------EE----TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred CCCCCEEEECCC-ee------EeC---hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 456777776532 21 122 567788888888888774 55444 3466777888888866 454444 3455
Q ss_pred cccCCcEEEecCCcccccchh-hhcCCCCcEeecCC
Q 035853 322 NLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGS 356 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~ 356 (581)
.+.+|+.+++..+ +..++.. +.+. +|+.+.+..
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 6888888888654 5555544 3444 777776554
No 84
>PF13173 AAA_14: AAA domain
Probab=88.47 E-value=0.57 Score=39.83 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=36.9
Q ss_pred HHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 6 ~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+.+.+....++.+|+||+|....+|......+-+.++..+|++|+.+
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred HHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccc
Confidence 44445544578899999999988888888777766667899999886
No 85
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=88.42 E-value=1.4 Score=42.93 Aligned_cols=83 Identities=8% Similarity=-0.040 Sum_probs=51.3
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCC---CCCCCEEEEeCCC----------------------------hHHHHHh
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPD---HQNGSRVLAMLTC----------------------------SDEIFSL 59 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~---~~~gs~iivTtr~----------------------------~~~~~~L 59 (581)
.+++++||+||+|.. ..++.+...... ....-.|++|... .+|..++
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 678999999999986 456666543221 1222244555321 1666666
Q ss_pred c-ccccCcc-ccCCC--CChh-hHHhhcCCcchhhhhhccc
Q 035853 60 C-RLENGEM-IHLDS--VPAG-PLRAKYQERPLVFLYYGRN 95 (581)
Q Consensus 60 f-~~f~~~~-~~~~~--~~~~-~i~~~c~GlPLal~~~g~~ 95 (581)
+ ..+.... ..... .+.. .|++.++|.|..+..++..
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~ 241 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDR 241 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHH
Confidence 6 4332111 01222 4556 8999999999999888877
No 86
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.66 E-value=0.5 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.8
Q ss_pred ccCCcEEEecCCcccccchhh
Q 035853 323 LLSLHTLDMRWSYIHHTPDEI 343 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i 343 (581)
+.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.66 E-value=0.5 Score=27.31 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.8
Q ss_pred ccCCcEEEecCCcccccchhh
Q 035853 323 LLSLHTLDMRWSYIHHTPDEI 343 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~i 343 (581)
+.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 457788888888888887764
No 88
>PF05729 NACHT: NACHT domain
Probab=84.46 E-value=0.88 Score=40.25 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=28.0
Q ss_pred cCceEEEEEEcCCChhH---------HHHHH-hhCCC-CCCCCEEEEeCCCh
Q 035853 13 RNKRYLIVFEDVISSDV---------WDYIG-KALPD-HQNGSRVLAMLTCS 53 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~~~---------~~~l~-~~~~~-~~~gs~iivTtr~~ 53 (581)
+.++++||+|++++... +.++. .-++. ..++.+||||+|.+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 47899999999987622 23323 22332 35689999999983
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=81.91 E-value=0.012 Score=61.89 Aligned_cols=44 Identities=18% Similarity=-0.018 Sum_probs=27.8
Q ss_pred cccCcccccccceEeeccCcCCCCCc-----ccccCCCCccEEEeeCCCH
Q 035853 513 WTMENDAMPKLESLIINPCAYLKILP-----EELWRIKSLTKLELWWPRF 557 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~lp-----~~l~~l~~L~~L~l~~c~~ 557 (581)
++....+.+.++.++++.|..-...+ ..-.+. .++.+.++.++.
T Consensus 396 l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 396 LAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred hhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 34445677888888888776443221 122345 888888888873
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=81.85 E-value=2.8 Score=41.66 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=64.7
Q ss_pred HHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-c----ceecccccccc-c--ccceeccccCchhhh
Q 035853 54 DEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-S----LVENMRLTWRI-Q--KWPLLFSIVELPQHL 123 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-t----~~~~~~~~~~~-~--~~~L~~sY~~L~~~l 123 (581)
+|..+++ +..+... ..-+.+.. .|++.|+|.|-.+..++.. . ..+......+. . ...+..+|..|+.+.
T Consensus 162 ~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~ 240 (305)
T TIGR00635 162 EELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMIDELGLDEID 240 (305)
T ss_pred HHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHH
Confidence 7777777 4433221 11114455 8999999999665444433 0 01100001010 0 344677899999988
Q ss_pred HHHHh-hhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHH-HHHhCCceee
Q 035853 124 KLCCL-YLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLE-QLISRGFIKV 177 (581)
Q Consensus 124 k~cFl-~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~-~L~~~~ll~~ 177 (581)
+.-+. ..+.+..+ .+..+++.... | .....++..++ .|++++|+..
T Consensus 241 ~~~L~al~~~~~~~-~~~~~~ia~~l---g----~~~~~~~~~~e~~Li~~~li~~ 288 (305)
T TIGR00635 241 RKLLSVLIEQFQGG-PVGLKTLAAAL---G----EDADTIEDVYEPYLLQIGFLQR 288 (305)
T ss_pred HHHHHHHHHHhCCC-cccHHHHHHHh---C----CCcchHHHhhhHHHHHcCCccc
Confidence 77665 55667543 45554443322 1 22345667778 6999999964
No 91
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=81.13 E-value=22 Score=36.73 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred cceeccccCchhhhHHHHhhhc-ccCC-CceechHHHHHHH--Hh--cCCCCCChHHHHHHHHHHHHhCCceeeeec--c
Q 035853 110 WPLLFSIVELPQHLKLCCLYLS-AFRD-AFEIATKELYQLW--IA--EGFIPDNSEKTAEEYLEQLISRGFIKVKKR--R 181 (581)
Q Consensus 110 ~~L~~sY~~L~~~lk~cFl~~a-~Fp~-~~~i~~~~Li~~w--~a--~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~--~ 181 (581)
....-.+..||.+.|....-++ .... ...+...++.... ++ .|.- +-.......|++.|.+.++++.... +
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~-~~~~~~~~~~l~~L~~~glI~~~~~~~g 363 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE-PRTHTRFYEYINKLDMLGIINTRYSGKG 363 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC-cCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3444567899998776655444 2221 1345666665442 22 2322 1123345669999999999997643 3
Q ss_pred CCCCEeEEEeChHHHHH
Q 035853 182 AGGTIKTCYISFITRGM 198 (581)
Q Consensus 182 ~~g~~~~~~mHdli~dl 198 (581)
..|+...++.+.---++
T Consensus 364 ~~g~~~~~~~~~~~~~~ 380 (394)
T PRK00411 364 GRGRTRLISLSYDPEDV 380 (394)
T ss_pred CCCCeEEEEecCCHHHH
Confidence 34666667665433333
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=74.34 E-value=8.8 Score=38.61 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=67.5
Q ss_pred HHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc----ccee---ccccccccc---ccceeccccCchh
Q 035853 54 DEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN----SLVE---NMRLTWRIQ---KWPLLFSIVELPQ 121 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~----t~~~---~~~~~~~~~---~~~L~~sY~~L~~ 121 (581)
++..+++ +..+......+ .+.. .|++.|+|.|-.+..+... ...+ .+ ..++- ...+...|..|+.
T Consensus 183 ~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I--~~~~v~~~l~~~~~~~~~l~~ 259 (328)
T PRK00080 183 EELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVI--TKEIADKALDMLGVDELGLDE 259 (328)
T ss_pred HHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHhCCCcCCCCH
Confidence 7777777 44333210111 4556 9999999999655444433 1110 11 11111 5567888899998
Q ss_pred hhHHHHh-hhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHH-HHHhCCceeeee
Q 035853 122 HLKLCCL-YLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLE-QLISRGFIKVKK 179 (581)
Q Consensus 122 ~lk~cFl-~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~-~L~~~~ll~~~~ 179 (581)
..+.-+. ....|+.+ .+..+.+...+- ...+.++..++ .|++.+|++...
T Consensus 260 ~~~~~l~~~~~~~~~~-~~~~~~~a~~lg-------~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 260 MDRKYLRTIIEKFGGG-PVGLDTLAAALG-------EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHHHHHHHcCCC-ceeHHHHHHHHC-------CCcchHHHHhhHHHHHcCCcccCC
Confidence 8777774 66677766 456655533321 22344566666 899999997433
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=72.65 E-value=2 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=9.5
Q ss_pred ccccceEeeccCcCCC
Q 035853 520 MPKLESLIINPCAYLK 535 (581)
Q Consensus 520 l~~L~~L~l~~c~~l~ 535 (581)
+|+|+.|+|++|+.+.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3566666666666544
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=72.59 E-value=0.08 Score=55.78 Aligned_cols=156 Identities=21% Similarity=0.125 Sum_probs=76.1
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccC-CceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc---
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWF-KFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK--- 314 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~--- 314 (581)
...+..|.+.++....... ..+ ...+... ..|++|++..|.++ .+...+....+++.++++.|.+.
T Consensus 114 ~~~L~~L~l~~n~l~~~g~--~~l---~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGA--RLL---CEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred cccHhHhhcccCCCccHhH--HHH---HhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 5566666666665542100 112 2333332 44566666666544 23344445566666666666542
Q ss_pred --ccChhhh----cccCCcEEEecCCcccc-----cchhhhcCCC-CcEeecCCcccCCC----CCCccCCC-CCCcEec
Q 035853 315 --HLPSSLC----NLLSLHTLDMRWSYIHH-----TPDEIWKMNE-LRHLNFGSITLPAH----PGKCCSSL-ENLNFIS 377 (581)
Q Consensus 315 --~lp~~i~----~L~~L~~L~l~~~~l~~-----lp~~i~~l~~-L~~L~l~~~~~~~~----~p~~i~~l-~~L~~L~ 377 (581)
.++..+. ...++++|++.+|.+.. +-..+...+. ++.|++..|.+... +.+.+..+ ..+++++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 2222233 35666666666664431 1112233343 45566666555421 22223333 4556666
Q ss_pred eecCC------CcchhhhCCCCCCCeEEEeeec
Q 035853 378 VLHPS------SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 378 l~~~~------~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+..++ ......+..+++++.+.++.+.
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 66655 2344445556666666666654
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=71.03 E-value=3.3 Score=39.19 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEEcCCCh---hHHHH-HHhhCCCC-CCCCEEEEeCCC
Q 035853 17 YLIVFEDVISS---DVWDY-IGKALPDH-QNGSRVLAMLTC 52 (581)
Q Consensus 17 ~LlVLDDv~~~---~~~~~-l~~~~~~~-~~gs~iivTtr~ 52 (581)
-+|||||+|.. .+|+. +...+... ..|+.|||||.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 48999999974 56763 33333322 246666555443
No 96
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.59 E-value=2.7 Score=24.35 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=9.8
Q ss_pred CCcEEeccCCCCcccCh
Q 035853 302 LLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~ 318 (581)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666555553
No 97
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=66.61 E-value=8.7 Score=35.95 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=22.7
Q ss_pred HHHHHhc-ccccCccccCCC-CChh-hHHhhcCCcchhhh
Q 035853 54 DEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQERPLVFL 90 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~GlPLal~ 90 (581)
+++++++ ..|.... ..+. .+.- +|...+||.|..|.
T Consensus 194 ~e~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 194 EEAREFLKELFKELI-KLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp HHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHhh-cccCCHHHHHHHHHHhCCCHHHHh
Confidence 8899999 4455432 3322 4444 99999999998775
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=64.98 E-value=21 Score=35.57 Aligned_cols=39 Identities=10% Similarity=0.325 Sum_probs=29.9
Q ss_pred CceEEEEEE-cCCChhHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFE-DVISSDVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLD-Dv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
++|+.||=| |..+...|+++.+.+..-.+++.+|++|.+
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 455555555 556667899999999988889999998765
No 99
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=62.77 E-value=2.4 Score=23.85 Aligned_cols=11 Identities=27% Similarity=0.087 Sum_probs=3.6
Q ss_pred CCcEEeccCCC
Q 035853 302 LLKYLVLNIPS 312 (581)
Q Consensus 302 ~Lr~L~L~~~~ 312 (581)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 33344444433
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=55.79 E-value=9.2 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.180 Sum_probs=7.2
Q ss_pred CCCcEEeccCCCCc
Q 035853 301 LLLKYLVLNIPSLK 314 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~ 314 (581)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 101
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=55.73 E-value=32 Score=35.11 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=47.8
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCCh---------------------HHHHHhc-ccccCcccc
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTCS---------------------DEIFSLC-RLENGEMIH 69 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~---------------------~~~~~Lf-~~f~~~~~~ 69 (581)
+++-++|+||+... ...+.|.+.+..-..+..+|++|.+. ++..+.. +.++..
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~--- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL--- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---
Confidence 56678999999765 56788888877655567777776541 5555555 322111
Q ss_pred CCCCChh-hHHhhcCCcchhhhhhcc
Q 035853 70 LDSVPAG-PLRAKYQERPLVFLYYGR 94 (581)
Q Consensus 70 ~~~~~~~-~i~~~c~GlPLal~~~g~ 94 (581)
..+.. .+++.++|.|..+..+..
T Consensus 217 --~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 217 --PDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHHhc
Confidence 02222 678888888876655543
No 102
>COG3903 Predicted ATPase [General function prediction only]
Probab=53.12 E-value=6 Score=40.14 Aligned_cols=170 Identities=18% Similarity=0.114 Sum_probs=107.5
Q ss_pred HHHHHHHhcCceEEEEEEcCCCh-hHHHHHHhhCCCCCCCCEEEEeCCC-----------------hHHHHHhc-cc---
Q 035853 5 KTALHDYLRNKRYLIVFEDVISS-DVWDYIGKALPDHQNGSRVLAMLTC-----------------SDEIFSLC-RL--- 62 (581)
Q Consensus 5 ~~~l~~~L~~kr~LlVLDDv~~~-~~~~~l~~~~~~~~~gs~iivTtr~-----------------~~~~~~Lf-~~--- 62 (581)
...+..+..++|.++|+|+--.. ++-..+...+-.+.+.-.|+.|+|. ++++-++| -.
T Consensus 78 ~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 78 VDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHH
Confidence 34677888899999999986443 3333444455555666789999887 17888888 44
Q ss_pred ccCccccCCC--CChh-hHHhhcCCcchhhhhhccc--c-----ceecccc----ccccc----------ccceeccccC
Q 035853 63 ENGEMIHLDS--VPAG-PLRAKYQERPLVFLYYGRN--S-----LVENMRL----TWRIQ----------KWPLLFSIVE 118 (581)
Q Consensus 63 f~~~~~~~~~--~~~~-~i~~~c~GlPLal~~~g~~--t-----~~~~~~~----~~~~~----------~~~L~~sY~~ 118 (581)
....- .... .... +|-++..|.|+||.-.++. | +.+..+. .+.-. ++.+..||--
T Consensus 158 ~~~~f-~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~l 236 (414)
T COG3903 158 VALSF-WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYAL 236 (414)
T ss_pred hccce-eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHh
Confidence 22121 2222 5666 9999999999999877776 2 2222210 11111 7889999999
Q ss_pred chhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeee
Q 035853 119 LPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKK 179 (581)
Q Consensus 119 L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~ 179 (581)
|..-.+--|--.+.|.-.+.-+ -..|.+.|-......-....-+..+++++++...+
T Consensus 237 Ltgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~ 293 (414)
T COG3903 237 LTGWERALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALD 293 (414)
T ss_pred hhhHHHHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhh
Confidence 9998888898888888776433 33444444331111122333455677787776544
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=51.30 E-value=35 Score=28.70 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=25.9
Q ss_pred hcCceEEEEEEcCCCh-----hHHHHHHhhCCCC---CCCCEEEEeCCC
Q 035853 12 LRNKRYLIVFEDVISS-----DVWDYIGKALPDH---QNGSRVLAMLTC 52 (581)
Q Consensus 12 L~~kr~LlVLDDv~~~-----~~~~~l~~~~~~~---~~gs~iivTtr~ 52 (581)
...++-+||+||++.. ..+..+....... ..+.+||+||..
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 3457889999999864 2233333333322 357889988875
No 104
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=49.23 E-value=19 Score=31.74 Aligned_cols=45 Identities=4% Similarity=0.032 Sum_probs=30.7
Q ss_pred HHHHhc-CceEEEEEEcCCCh-----hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 8 LHDYLR-NKRYLIVFEDVISS-----DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 8 l~~~L~-~kr~LlVLDDv~~~-----~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
.++.+. ++==|||||++-.. .+.+++...+.....+--||+|.|+
T Consensus 87 a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 87 AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 344443 45569999998544 3556666666555567789999997
No 105
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=46.76 E-value=14 Score=34.55 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=24.4
Q ss_pred ceEEEEEEcCCCh---hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 15 KRYLIVFEDVISS---DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 15 kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
.-=++|||||... .....+...+....+++.+||||.+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 3457899999876 3455555555555567899999875
No 106
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=46.53 E-value=22 Score=32.26 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=24.4
Q ss_pred HhcCceEEEEEEcCCCh-hHHHHHHhhCCCCCCCCEEE
Q 035853 11 YLRNKRYLIVFEDVISS-DVWDYIGKALPDHQNGSRVL 47 (581)
Q Consensus 11 ~L~~kr~LlVLDDv~~~-~~~~~l~~~~~~~~~gs~ii 47 (581)
.+++|++||| |||-+. ....+....+...+..+..+
T Consensus 94 ~v~gk~VLIV-DDIidTG~Tl~~~~~~Lk~~Ga~~V~~ 130 (181)
T PRK09162 94 SLKGRTVLVV-DDILDEGHTLAAIRDRCLEMGAAEVYS 130 (181)
T ss_pred CCCCCEEEEE-ccccCcHHHHHHHHHHHHhCCCCEEEE
Confidence 3677888776 999877 56777777777655444333
No 107
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.95 E-value=18 Score=21.30 Aligned_cols=14 Identities=29% Similarity=0.119 Sum_probs=8.7
Q ss_pred CCCcEEeccCCCCc
Q 035853 301 LLLKYLVLNIPSLK 314 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~ 314 (581)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666654
No 108
>PRK10536 hypothetical protein; Provisional
Probab=42.29 E-value=37 Score=32.65 Aligned_cols=37 Identities=8% Similarity=0.253 Sum_probs=25.8
Q ss_pred HhcCceE---EEEEEcCCChh--HHHHHHhhCCCCCCCCEEEEeC
Q 035853 11 YLRNKRY---LIVFEDVISSD--VWDYIGKALPDHQNGSRVLAML 50 (581)
Q Consensus 11 ~L~~kr~---LlVLDDv~~~~--~~~~l~~~~~~~~~gs~iivTt 50 (581)
+++|..+ +||+|+..+.+ +...+. .-.+.|||||||-
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~l---tR~g~~sk~v~~G 210 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFL---TRLGENVTVIVNG 210 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHH---hhcCCCCEEEEeC
Confidence 4566554 99999998874 444444 3346899999984
No 109
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=42.25 E-value=3.5e+02 Score=27.34 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=43.4
Q ss_pred ceeccccCchhhhHHHHhhhccc--CCCceechHHHHHHHH--hc--CCCCCChHHHHHHHHHHHHhCCceeeeec
Q 035853 111 PLLFSIVELPQHLKLCCLYLSAF--RDAFEIATKELYQLWI--AE--GFIPDNSEKTAEEYLEQLISRGFIKVKKR 180 (581)
Q Consensus 111 ~L~~sY~~L~~~lk~cFl~~a~F--p~~~~i~~~~Li~~w~--a~--g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 180 (581)
...-+...||.+.|.....++.. -.+..+...++...+- ++ | +.+-.+.....+++.|...+++.....
T Consensus 278 ~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 278 RLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIG-VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 33445678888888665554421 1344567777776442 22 3 223445667889999999999998653
No 110
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=42.24 E-value=40 Score=34.92 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.2
Q ss_pred ceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 15 KRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 15 kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
++..|+||.|.....|+.....+-+.++. +|++|+.+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgss 130 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSS 130 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCc
Confidence 67899999999999999988888877766 89999766
No 111
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=41.87 E-value=41 Score=28.05 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCc-eEEEEEEcCCCh---hHHHHHHhhCCCCCCCCEEEEeCC
Q 035853 3 QRKTALHDYLRNK-RYLIVFEDVISS---DVWDYIGKALPDHQNGSRVLAMLT 51 (581)
Q Consensus 3 ~l~~~l~~~L~~k-r~LlVLDDv~~~---~~~~~l~~~~~~~~~gs~iivTtr 51 (581)
++.+.+.+.+... ..+||+||+..- +.++.+..... ..+-+||++.+
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~ 124 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGT 124 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEES
T ss_pred HHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEEC
Confidence 4556777777654 459999999654 45666665544 55677777643
No 112
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.47 E-value=14 Score=38.98 Aligned_cols=64 Identities=23% Similarity=0.237 Sum_probs=27.4
Q ss_pred CCCccEEEEeeccCCC-CCccc-ccCCCCCCeEEEecCc--ccCceeeeCCCCCCCCcEEEecCCCccc
Q 035853 447 PPRLIELSLSNTELKY-DPMPA-LEKLPHLRVLKLKKNS--FFGRKLVCSSGGFPSLKVMHLKSMFWLE 511 (581)
Q Consensus 447 l~~L~~L~L~~~~l~~-~~~~~-l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 511 (581)
.+.+..+.|++|++.. +.... -...|+|+.|+|++|. ..... ...--+...|++|.+.+|+-.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 4455555555554322 11111 1234666666666551 11111 1111233446666666665443
No 113
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.14 E-value=74 Score=33.17 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=44.1
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEE--eCCC----------------------hHHHHHhc-ccccC
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLA--MLTC----------------------SDEIFSLC-RLENG 65 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~----------------------~~~~~~Lf-~~f~~ 65 (581)
.+++.+|++|||+.. .+.+.+...+.. |..++| ||.+ .++.++++ +.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 458899999999875 466677665543 455554 3433 06777777 43322
Q ss_pred ccccC-CC-CChh-hHHhhcCCcchhhh
Q 035853 66 EMIHL-DS-VPAG-PLRAKYQERPLVFL 90 (581)
Q Consensus 66 ~~~~~-~~-~~~~-~i~~~c~GlPLal~ 90 (581)
..... +- .+.. .+++.|+|-|..+.
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~al 194 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRAL 194 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHH
Confidence 11011 12 4445 77888888776543
No 114
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=35.70 E-value=43 Score=36.90 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEE--eCCC
Q 035853 3 QRKTALHDYLRNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLA--MLTC 52 (581)
Q Consensus 3 ~l~~~l~~~L~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iiv--Ttr~ 52 (581)
..+..|.+.+++++++++.|+.|.. ..|+.+...+....+...|+| ||++
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD 333 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccc
Confidence 3688999999999999998888776 468888877777766666666 5554
No 115
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=33.21 E-value=1.3e+02 Score=30.29 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=46.5
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCCh---------------------HHHHHhc-ccccCcccc
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTCS---------------------DEIFSLC-RLENGEMIH 69 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~---------------------~~~~~Lf-~~f~~~~~~ 69 (581)
+.|+. |+|++... ...+++.+.+..-..++.+|+||.+. +++.+.. +.++..
T Consensus 106 ~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 106 GRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 34555 67999875 57888888887666678888886551 5555444 322110
Q ss_pred CCCCChh-hHHhhcCCcchhhhhhc
Q 035853 70 LDSVPAG-PLRAKYQERPLVFLYYG 93 (581)
Q Consensus 70 ~~~~~~~-~i~~~c~GlPLal~~~g 93 (581)
..+-. .++..++|.|..+..+.
T Consensus 182 --~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 182 --DERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred --ChHHHHHHHHHcCCCHHHHHHHH
Confidence 02334 67888899987665543
No 116
>PF14162 YozD: YozD-like protein
Probab=32.20 E-value=49 Score=22.56 Aligned_cols=29 Identities=24% Similarity=0.509 Sum_probs=20.7
Q ss_pred HhcCCCCC--ChHHHHHHHHHHHHhCCceee
Q 035853 149 IAEGFIPD--NSEKTAEEYLEQLISRGFIKV 177 (581)
Q Consensus 149 ~a~g~i~~--~~~~~~~~~~~~L~~~~ll~~ 177 (581)
+.-||++. ..++.|..-|+-|+.+|++..
T Consensus 22 ~kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 22 VKRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34577776 566777777888888887754
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=29.67 E-value=1.4e+02 Score=30.94 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=28.4
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++-++++||+... ...+.+...+....++..+|++|.+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 34447788999776 4567788877766667888888665
No 118
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.65 E-value=21 Score=37.75 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=51.3
Q ss_pred CCCCCCeEEEecCcccCc-eeeeCCCCCCCCcEEEecCCCcccccccC--cccccccceEeeccCcCCCCCc--c-----
Q 035853 470 KLPHLRVLKLKKNSFFGR-KLVCSSGGFPSLKVMHLKSMFWLEEWTME--NDAMPKLESLIINPCAYLKILP--E----- 539 (581)
Q Consensus 470 ~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~l~~L~~L~l~~c~~l~~lp--~----- 539 (581)
+.|.+..+.|++|.+... .+.......|+|+.|+|+++.....-..+ --....|++|.+.|||.-+..- .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 467788888998876432 22334567899999999998333322222 2345678999999998655321 1
Q ss_pred cccCCCCccEEE
Q 035853 540 ELWRIKSLTKLE 551 (581)
Q Consensus 540 ~l~~l~~L~~L~ 551 (581)
--..+|.|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 112466666654
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.75 E-value=1.3e+02 Score=32.17 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=29.5
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCC
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLT 51 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr 51 (581)
.+++-++|+|+++.- ..|+.+...+....+..++|++|.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 356778999999885 579999888876666677776553
No 120
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=28.51 E-value=2.1e+02 Score=19.98 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=40.9
Q ss_pred CchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCC
Q 035853 118 ELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGG 184 (581)
Q Consensus 118 ~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g 184 (581)
+|+...-.++.+++-+|.+ .+...++.+.+- -........++.|+++++++......++
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l~-------~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERLG-------ISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHHT-------S-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHHC-------cCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4566667788888888876 456666665553 2345567889999999999988765544
No 121
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=27.70 E-value=91 Score=28.17 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.5
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+.+-++|+||+... +.++.+...+....+.+.+|++|++
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 135 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPS 135 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 45668999999765 4688888888776667778777765
No 122
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=25.72 E-value=54 Score=29.01 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.5
Q ss_pred ceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 15 KRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 15 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
++=.+|+||+... +.+++|.+.+.....++++|++|++
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 4557889999875 6788999888887788999999875
No 123
>PRK08116 hypothetical protein; Validated
Probab=24.04 E-value=77 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHhcCceEEEEEEcCCC--hhHHH--HHHhhCCC-CCCCCEEEEeCCC
Q 035853 9 HDYLRNKRYLIVFEDVIS--SDVWD--YIGKALPD-HQNGSRVLAMLTC 52 (581)
Q Consensus 9 ~~~L~~kr~LlVLDDv~~--~~~~~--~l~~~~~~-~~~gs~iivTtr~ 52 (581)
.+.+.+-. ||||||+.. ..+|. .+...+.. ...|..+||||.-
T Consensus 173 ~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 173 IRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33444434 899999943 23443 23322221 2346679999874
No 124
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=22.14 E-value=1.6e+02 Score=29.81 Aligned_cols=80 Identities=9% Similarity=0.002 Sum_probs=48.2
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC------------h---------HHHHHhcccccCccccC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC------------S---------DEIFSLCRLENGEMIHL 70 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~------------~---------~~~~~Lf~~f~~~~~~~ 70 (581)
+++-++|+|++... ...++|.+.+.....+..+|++|.. . ++..+...+.+... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-
Confidence 56678999999876 5677788777654445555555432 0 55555552211111 1
Q ss_pred CCCChh-hHHhhcCCcchhhhhhccc
Q 035853 71 DSVPAG-PLRAKYQERPLVFLYYGRN 95 (581)
Q Consensus 71 ~~~~~~-~i~~~c~GlPLal~~~g~~ 95 (581)
-+.+.. .+++.++|.|..+..+...
T Consensus 218 ~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 218 SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 113345 8899999999876655443
No 125
>PRK05642 DNA replication initiation factor; Validated
Probab=21.33 E-value=67 Score=30.41 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=21.8
Q ss_pred EEEEEcCCCh---hHHHH-HHhhCCC-CCCCCEEEEeCCC
Q 035853 18 LIVFEDVISS---DVWDY-IGKALPD-HQNGSRVLAMLTC 52 (581)
Q Consensus 18 LlVLDDv~~~---~~~~~-l~~~~~~-~~~gs~iivTtr~ 52 (581)
+||+|||... .+|++ +...+.. ...|.+||+|++.
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 6789999643 46654 4444432 2346789998874
No 126
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.27 E-value=3e+02 Score=30.55 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=30.4
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
.+++-++|+|+|... ..++.|.+.+..-....++|++|.+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 356668999999876 5788999888766667777777655
No 127
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=21.06 E-value=1.1e+02 Score=27.58 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=18.5
Q ss_pred hcCceEEEEEEcCCCh-hHHHHHHhhCCCCC
Q 035853 12 LRNKRYLIVFEDVISS-DVWDYIGKALPDHQ 41 (581)
Q Consensus 12 L~~kr~LlVLDDv~~~-~~~~~l~~~~~~~~ 41 (581)
+++|++ ||+|||-+. .....+...+...|
T Consensus 93 v~gr~V-LIVDDIidTG~Tl~~~~~~L~~~G 122 (176)
T PRK05205 93 IEGKRV-ILVDDVLYTGRTIRAALDALFDYG 122 (176)
T ss_pred CCCCEE-EEEecccCcHHHHHHHHHHHHhcC
Confidence 567766 555998777 45666666665444
No 128
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=20.30 E-value=1.6e+02 Score=27.87 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=32.8
Q ss_pred HHHHHHHhcC--ceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEe
Q 035853 5 KTALHDYLRN--KRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAM 49 (581)
Q Consensus 5 ~~~l~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivT 49 (581)
..+|++.|.. ..+.+|||+|.+..+..++......+|-..-++|.
T Consensus 6 ~~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~ 52 (229)
T PRK11081 6 YARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVW 52 (229)
T ss_pred HHhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEec
Confidence 4556777764 45899999999999988888777766654444443
Done!