Query 035853
Match_columns 581
No_of_seqs 461 out of 4457
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.1E-33 2.8E-37 297.2 12.9 192 2-209 229-474 (549)
2 3rgz_A Protein brassinosteroid 100.0 8E-30 2.7E-34 285.9 16.3 108 471-581 631-766 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 2.7E-27 9.1E-32 251.2 26.1 301 235-556 22-331 (477)
4 3rgz_A Protein brassinosteroid 100.0 4.4E-28 1.5E-32 271.8 18.6 270 276-556 267-549 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-27 1.1E-31 258.2 22.0 131 221-361 30-167 (606)
6 3v47_A TOLL-like receptor 5B a 100.0 1.1E-27 3.9E-32 252.5 17.5 314 221-556 28-406 (455)
7 4eco_A Uncharacterized protein 99.9 2.8E-27 9.7E-32 259.3 20.1 308 222-556 248-598 (636)
8 3o6n_A APL1; leucine-rich repe 99.9 7.1E-27 2.4E-31 241.2 21.4 286 244-556 44-350 (390)
9 4eco_A Uncharacterized protein 99.9 1.2E-27 4.1E-32 262.2 15.7 311 221-556 204-577 (636)
10 4fmz_A Internalin; leucine ric 99.9 1E-26 3.4E-31 236.2 21.3 299 221-556 42-344 (347)
11 4ecn_A Leucine-rich repeat pro 99.9 7.5E-27 2.6E-31 260.7 21.9 308 222-556 490-838 (876)
12 3t6q_A CD180 antigen; protein- 99.9 5.9E-27 2E-31 256.2 19.1 315 221-556 31-436 (606)
13 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-26 6.5E-31 247.4 21.6 304 221-556 19-479 (520)
14 4fmz_A Internalin; leucine ric 99.9 2.2E-26 7.5E-31 233.7 20.6 278 244-556 43-322 (347)
15 4ecn_A Leucine-rich repeat pro 99.9 8.6E-27 2.9E-31 260.3 18.6 310 221-556 446-817 (876)
16 2z63_A TOLL-like receptor 4, v 99.9 2.5E-26 8.7E-31 249.3 21.5 165 391-556 345-529 (570)
17 3oja_B Anopheles plasmodium-re 99.9 2.8E-26 9.4E-31 249.9 20.7 286 244-556 50-356 (597)
18 3t6q_A CD180 antigen; protein- 99.9 1.1E-25 3.6E-30 246.2 25.5 274 279-556 255-558 (606)
19 2z7x_B TOLL-like receptor 1, v 99.9 5.4E-26 1.8E-30 243.9 22.7 313 226-556 3-455 (520)
20 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4E-30 243.5 23.4 108 443-556 398-508 (562)
21 4fcg_A Uncharacterized protein 99.9 6.8E-26 2.3E-30 227.7 19.8 234 276-556 79-312 (328)
22 3vq2_A TLR4, TOLL-like recepto 99.9 4.4E-26 1.5E-30 249.3 19.7 138 236-382 23-164 (606)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-25 7.7E-30 241.2 23.3 113 441-556 369-484 (562)
24 1o6v_A Internalin A; bacterial 99.9 3.6E-25 1.2E-29 233.9 22.4 303 223-556 46-364 (466)
25 2id5_A Lingo-1, leucine rich r 99.9 5.3E-25 1.8E-29 233.5 22.5 267 278-556 32-307 (477)
26 1o6v_A Internalin A; bacterial 99.9 5E-25 1.7E-29 232.8 21.6 299 221-556 66-386 (466)
27 3v47_A TOLL-like receptor 5B a 99.9 6E-26 2.1E-30 239.3 14.3 304 239-556 25-382 (455)
28 3j0a_A TOLL-like receptor 5; m 99.9 1.3E-24 4.6E-29 246.0 24.5 310 221-556 22-392 (844)
29 1ogq_A PGIP-2, polygalacturona 99.9 7.3E-26 2.5E-30 226.1 12.0 246 278-537 50-307 (313)
30 2z63_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 239.6 17.9 322 220-556 25-505 (570)
31 3j0a_A TOLL-like receptor 5; m 99.9 9.5E-25 3.2E-29 247.2 21.3 306 237-556 17-373 (844)
32 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-24 3.9E-29 235.1 20.8 314 221-556 24-508 (549)
33 3bz5_A Internalin-J, INLJ; leu 99.9 4.3E-24 1.5E-28 224.2 24.0 291 222-556 41-350 (457)
34 3o6n_A APL1; leucine-rich repe 99.9 1.2E-24 4.2E-29 224.4 19.5 269 276-556 43-329 (390)
35 1ziw_A TOLL-like receptor 3; i 99.9 1.3E-24 4.5E-29 240.9 21.1 274 272-555 67-363 (680)
36 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-25 4.4E-30 265.8 12.7 185 2-206 221-452 (1249)
37 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-24 5.1E-29 234.3 19.8 304 238-556 19-421 (549)
38 1xku_A Decorin; proteoglycan, 99.9 5.2E-24 1.8E-28 214.5 21.9 260 278-555 52-329 (330)
39 1vt4_I APAF-1 related killer D 99.9 1.6E-25 5.4E-30 244.5 10.7 170 3-200 229-437 (1221)
40 1xku_A Decorin; proteoglycan, 99.9 1.5E-24 5E-29 218.6 17.1 260 279-556 32-304 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-24 4.8E-29 218.9 15.9 280 246-556 34-331 (332)
42 3bz5_A Internalin-J, INLJ; leu 99.9 7E-24 2.4E-28 222.6 21.4 268 244-556 41-329 (457)
43 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-25 7.9E-30 222.5 8.8 242 301-556 50-302 (313)
44 3oja_B Anopheles plasmodium-re 99.9 5.3E-24 1.8E-28 231.9 19.4 270 276-556 49-335 (597)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.7E-24 1.6E-28 215.0 16.6 283 224-532 34-331 (332)
46 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-23 4.1E-28 233.1 19.8 293 244-556 72-441 (680)
47 4fcg_A Uncharacterized protein 99.9 6.6E-24 2.3E-28 213.2 14.5 218 244-482 80-311 (328)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-22 4.1E-27 223.1 22.0 326 219-556 48-578 (635)
49 2z80_A TOLL-like receptor 2, v 99.9 3.9E-23 1.3E-27 210.2 16.7 263 281-556 34-312 (353)
50 2z66_A Variable lymphocyte rec 99.9 1E-22 3.4E-27 202.8 15.1 104 279-382 29-137 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.7E-27 205.5 15.2 248 278-537 52-317 (353)
52 1jl5_A Outer protein YOPM; leu 99.9 1E-21 3.5E-26 205.9 21.1 283 221-556 89-407 (454)
53 3zyj_A Leucine-rich repeat-con 99.9 6E-22 2.1E-26 207.6 18.8 239 280-532 45-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 8.2E-22 2.8E-26 207.3 19.1 239 280-532 56-301 (452)
55 2z66_A Variable lymphocyte rec 99.9 9.1E-22 3.1E-26 195.9 16.0 240 281-534 10-261 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 4.5E-22 1.6E-26 195.9 12.8 215 281-508 14-236 (285)
57 3g06_A SSPH2 (leucine-rich rep 99.9 9.2E-21 3.2E-25 204.9 22.4 214 277-556 80-295 (622)
58 1z6t_A APAF-1, apoptotic prote 99.9 3.3E-22 1.1E-26 217.6 10.8 180 3-204 222-450 (591)
59 4g8a_A TOLL-like receptor 4; l 99.9 5.1E-21 1.7E-25 210.1 18.9 309 237-556 44-553 (635)
60 1wwl_A Monocyte differentiatio 99.9 2.2E-22 7.6E-27 200.8 5.4 241 298-556 40-307 (312)
61 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-21 3.3E-25 204.7 18.4 235 221-508 59-295 (622)
62 3zyi_A Leucine-rich repeat-con 99.8 1.7E-20 5.7E-25 197.3 19.5 239 302-556 55-301 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-22 5.8E-27 202.1 3.5 246 271-537 27-278 (317)
64 1jl5_A Outer protein YOPM; leu 99.8 4.4E-20 1.5E-24 193.5 21.9 279 225-556 73-368 (454)
65 3zyj_A Leucine-rich repeat-con 99.8 2.1E-20 7.1E-25 195.8 19.3 239 302-556 44-290 (440)
66 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-23 9.3E-28 219.3 -3.7 294 244-556 55-409 (461)
67 1ozn_A Reticulon 4 receptor; N 99.8 8.3E-21 2.8E-25 186.9 12.6 200 277-486 31-239 (285)
68 1wwl_A Monocyte differentiatio 99.8 4.4E-22 1.5E-26 198.7 1.9 239 276-534 41-309 (312)
69 3o53_A Protein LRIM1, AGAP0063 99.8 7.8E-21 2.7E-25 190.0 10.8 255 278-555 10-272 (317)
70 3oja_A Leucine-rich immune mol 99.8 2.3E-21 8E-26 205.2 6.8 237 274-531 30-272 (487)
71 1z7x_W Ribonuclease inhibitor; 99.8 5.9E-23 2E-27 216.7 -6.7 324 223-556 3-381 (461)
72 3oja_A Leucine-rich immune mol 99.8 8E-20 2.7E-24 193.4 12.2 231 299-552 32-269 (487)
73 3ogk_B Coronatine-insensitive 99.8 4.3E-21 1.5E-25 209.1 2.0 323 223-556 112-524 (592)
74 2o6q_A Variable lymphocyte rec 99.8 1.9E-18 6.4E-23 168.5 18.1 195 279-507 17-215 (270)
75 2ast_B S-phase kinase-associat 99.8 1.2E-20 4.1E-25 190.3 1.5 249 279-542 48-314 (336)
76 2z62_A TOLL-like receptor 4, v 99.8 8.1E-19 2.8E-23 171.7 14.2 198 278-485 28-237 (276)
77 2z62_A TOLL-like receptor 4, v 99.8 9.4E-19 3.2E-23 171.3 14.5 216 282-533 11-236 (276)
78 3ogk_B Coronatine-insensitive 99.8 4.1E-20 1.4E-24 201.4 4.6 306 244-555 191-548 (592)
79 1h6u_A Internalin H; cell adhe 99.8 8.8E-19 3E-23 174.2 13.8 192 275-486 38-231 (308)
80 3rfs_A Internalin B, repeat mo 99.8 2.4E-18 8.3E-23 167.9 14.4 82 277-360 40-122 (272)
81 3rfs_A Internalin B, repeat mo 99.8 1.5E-18 5.1E-23 169.4 12.2 171 244-428 40-214 (272)
82 1p9a_G Platelet glycoprotein I 99.8 7.1E-18 2.4E-22 166.0 16.4 196 274-484 6-207 (290)
83 2xwt_C Thyrotropin receptor; s 99.8 1.2E-18 4.2E-23 166.6 10.4 110 290-403 23-140 (239)
84 2o6q_A Variable lymphocyte rec 99.8 1.2E-17 4.3E-22 162.7 17.4 196 301-534 16-218 (270)
85 1p9a_G Platelet glycoprotein I 99.8 4.9E-18 1.7E-22 167.2 13.7 196 297-508 6-206 (290)
86 2p1m_B Transport inhibitor res 99.7 2.5E-19 8.5E-24 195.2 3.3 324 222-556 104-517 (594)
87 2ast_B S-phase kinase-associat 99.7 1E-19 3.5E-24 183.5 -0.5 240 302-556 48-304 (336)
88 1h6u_A Internalin H; cell adhe 99.7 1.1E-17 3.9E-22 166.2 14.2 191 244-463 40-232 (308)
89 2ca6_A RAN GTPase-activating p 99.7 8.9E-20 3E-24 187.7 -2.1 237 271-537 25-319 (386)
90 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.1E-22 158.5 11.8 214 305-556 15-237 (239)
91 4ay9_X Follicle-stimulating ho 99.7 6.4E-17 2.2E-21 163.9 15.9 233 281-530 12-255 (350)
92 2ca6_A RAN GTPase-activating p 99.7 2.2E-19 7.5E-24 184.8 -2.6 251 280-556 11-314 (386)
93 4glp_A Monocyte differentiatio 99.7 3.9E-17 1.3E-21 162.6 11.7 178 244-429 63-261 (310)
94 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.6E-21 162.2 14.3 235 304-554 12-255 (350)
95 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 151.2 16.4 173 278-485 14-192 (251)
96 2p1m_B Transport inhibitor res 99.7 8.2E-19 2.8E-23 191.1 -2.3 302 244-556 104-492 (594)
97 3goz_A Leucine-rich repeat-con 99.7 4.8E-18 1.6E-22 173.0 1.7 228 271-508 15-295 (362)
98 1h6t_A Internalin B; cell adhe 99.7 1.4E-16 4.8E-21 156.9 11.6 124 275-404 43-167 (291)
99 4glp_A Monocyte differentiatio 99.7 1.7E-16 5.9E-21 157.9 11.3 193 347-556 91-305 (310)
100 1m9s_A Internalin B; cell inva 99.7 2.2E-16 7.4E-21 170.5 10.7 170 275-462 40-211 (605)
101 3goz_A Leucine-rich repeat-con 99.6 9E-18 3.1E-22 171.0 -2.2 246 282-535 2-298 (362)
102 3cvr_A Invasion plasmid antige 99.6 2.2E-15 7.6E-20 160.9 14.2 178 278-487 59-245 (571)
103 3m19_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 143.0 14.1 171 301-508 14-190 (251)
104 2o6s_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 139.3 12.5 176 281-472 10-189 (208)
105 1m9s_A Internalin B; cell inva 99.6 1.8E-15 6E-20 163.4 11.5 189 280-487 23-212 (605)
106 1h6t_A Internalin B; cell adhe 99.6 7.3E-15 2.5E-19 144.5 13.8 164 244-428 45-209 (291)
107 3cvr_A Invasion plasmid antige 99.6 3.5E-15 1.2E-19 159.3 12.2 185 302-543 60-252 (571)
108 4ezg_A Putative uncharacterize 99.6 2.8E-15 9.5E-20 138.6 10.0 152 298-485 41-194 (197)
109 1xeu_A Internalin C; cellular 99.6 3.7E-15 1.3E-19 144.3 8.3 169 276-486 17-186 (263)
110 2o6s_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 133.7 12.8 176 303-522 9-190 (208)
111 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 137.2 7.8 127 276-404 42-170 (197)
112 1xeu_A Internalin C; cellular 99.5 5.9E-15 2E-19 142.9 7.6 171 299-514 17-188 (263)
113 2xot_A Amphoterin-induced prot 99.5 5.5E-14 1.9E-18 142.8 10.5 122 281-404 21-147 (361)
114 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.9E-18 127.9 13.3 122 281-404 14-139 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 2.1E-13 7.1E-18 128.2 12.5 122 281-404 14-140 (220)
116 3e6j_A Variable lymphocyte rec 99.5 2.6E-13 8.9E-18 128.4 13.1 122 281-404 22-146 (229)
117 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.5E-18 123.7 10.1 128 275-404 21-158 (168)
118 1dce_A Protein (RAB geranylger 99.5 4E-16 1.4E-20 167.4 -8.3 120 373-504 443-567 (567)
119 3e6j_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 126.5 13.0 135 239-382 34-170 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 4.4E-13 1.5E-17 126.0 12.0 126 279-404 33-164 (220)
121 2v9t_B SLIT homolog 2 protein 99.4 5.9E-13 2E-17 125.1 12.1 127 278-404 32-163 (220)
122 2ell_A Acidic leucine-rich nuc 99.4 4E-13 1.4E-17 120.5 10.2 134 244-386 23-163 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 1.3E-13 4.5E-18 121.1 6.0 125 275-400 14-147 (149)
124 2je0_A Acidic leucine-rich nuc 99.4 4E-13 1.4E-17 117.9 6.2 127 244-379 16-148 (149)
125 2xot_A Amphoterin-induced prot 99.4 8.8E-13 3E-17 133.9 9.0 171 303-485 20-202 (361)
126 4b8c_D Glucose-repressible alc 99.4 1.3E-12 4.6E-17 144.4 11.2 154 222-382 172-327 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.4 6.4E-13 2.2E-17 120.2 6.7 128 274-404 15-151 (176)
128 1w8a_A SLIT protein; signaling 99.4 2.3E-12 7.7E-17 118.4 10.5 122 281-404 11-137 (192)
129 4b8c_D Glucose-repressible alc 99.4 1.2E-13 4E-18 152.9 2.0 159 244-415 172-336 (727)
130 2wfh_A SLIT homolog 2 protein 99.3 6.8E-12 2.3E-16 115.1 12.4 122 281-404 13-137 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.3 2.2E-12 7.4E-17 116.7 8.3 127 244-382 18-151 (176)
132 1dce_A Protein (RAB geranylger 99.3 3.5E-12 1.2E-16 136.8 10.2 150 271-426 402-567 (567)
133 3sb4_A Hypothetical leucine ri 99.3 1.7E-11 5.8E-16 122.7 13.8 284 244-552 24-328 (329)
134 1ds9_A Outer arm dynein; leuci 99.3 7.6E-14 2.6E-18 129.0 -4.8 106 296-404 43-151 (198)
135 1ds9_A Outer arm dynein; leuci 99.2 3.7E-13 1.3E-17 124.3 -2.5 126 271-399 41-180 (198)
136 1w8a_A SLIT protein; signaling 99.2 2.9E-11 9.8E-16 110.9 9.7 122 303-428 10-135 (192)
137 2wfh_A SLIT homolog 2 protein 99.2 9E-11 3.1E-15 107.6 11.4 100 303-404 12-113 (193)
138 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 104.5 12.4 122 281-404 10-135 (177)
139 2o6r_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 103.8 10.2 105 278-382 28-135 (177)
140 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 102.0 11.5 100 281-382 15-116 (174)
141 3g39_A Variable lymphocyte rec 99.1 2.7E-10 9.3E-15 102.1 10.7 101 280-382 11-113 (170)
142 3sb4_A Hypothetical leucine ri 99.1 8.3E-10 2.8E-14 110.4 12.5 278 223-528 25-328 (329)
143 4fdw_A Leucine rich hypothetic 99.0 1.5E-08 5.2E-13 103.7 19.7 240 272-556 130-381 (401)
144 4fdw_A Leucine rich hypothetic 99.0 2.3E-08 7.9E-13 102.3 20.9 172 366-556 175-356 (401)
145 3g39_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 94.0 9.2 101 302-404 10-113 (170)
146 2r9u_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 94.1 9.4 100 303-404 14-116 (174)
147 2ifg_A High affinity nerve gro 98.7 3.1E-08 1.1E-12 99.6 10.1 99 282-382 12-114 (347)
148 3un9_A NLR family member X1; l 98.7 1.3E-09 4.6E-14 110.4 -1.5 156 244-404 71-250 (372)
149 2ra8_A Uncharacterized protein 98.7 7.2E-09 2.5E-13 104.3 3.1 110 447-556 192-318 (362)
150 3un9_A NLR family member X1; l 98.7 1.1E-09 3.7E-14 111.1 -3.1 128 277-404 71-222 (372)
151 4fs7_A Uncharacterized protein 98.6 1.6E-06 5.6E-11 88.6 18.9 278 244-555 70-376 (394)
152 2ifg_A High affinity nerve gro 98.5 1.2E-07 4.1E-12 95.3 7.7 100 304-404 11-114 (347)
153 4fs7_A Uncharacterized protein 98.5 1.4E-06 4.9E-11 89.0 15.8 293 223-550 71-393 (394)
154 2ra8_A Uncharacterized protein 98.5 2.9E-08 9.9E-13 99.8 1.6 15 274-288 135-149 (362)
155 3e4g_A ATP synthase subunit S, 98.3 4.9E-07 1.7E-11 80.0 4.9 88 448-536 61-154 (176)
156 4gt6_A Cell surface protein; l 98.2 0.00011 3.9E-09 74.8 20.9 282 246-557 65-369 (394)
157 4gt6_A Cell surface protein; l 98.2 4.5E-05 1.6E-09 77.8 17.4 300 225-555 66-388 (394)
158 1io0_A Tropomodulin; LRR prote 98.1 8.1E-07 2.8E-11 80.4 2.3 90 271-360 29-136 (185)
159 1io0_A Tropomodulin; LRR prote 98.0 4E-06 1.4E-10 75.7 5.1 112 244-360 35-164 (185)
160 3e4g_A ATP synthase subunit S, 97.9 4.6E-06 1.6E-10 73.7 3.7 83 472-556 61-150 (176)
161 4h09_A Hypothetical leucine ri 97.9 0.00035 1.2E-08 70.6 18.4 60 271-333 62-122 (379)
162 3rw6_A Nuclear RNA export fact 97.7 3.1E-05 1.1E-09 73.7 5.8 77 275-352 167-256 (267)
163 3rw6_A Nuclear RNA export fact 97.7 3E-05 1E-09 73.8 5.0 81 298-379 167-259 (267)
164 4h09_A Hypothetical leucine ri 97.6 0.002 6.9E-08 65.0 18.0 276 223-529 46-341 (379)
165 1w5s_A Origin recognition comp 97.1 0.00047 1.6E-08 70.5 6.5 176 4-180 125-373 (412)
166 2qen_A Walker-type ATPase; unk 96.6 0.0034 1.1E-07 62.4 7.2 178 4-198 116-347 (350)
167 2fna_A Conserved hypothetical 96.1 0.0057 2E-07 60.8 5.6 165 15-198 137-355 (357)
168 1pgv_A TMD-1, tropomodulin TMD 95.1 0.016 5.6E-07 51.9 4.2 38 299-336 68-110 (197)
169 3rfe_A Platelet glycoprotein I 95.0 0.04 1.4E-06 45.9 6.1 51 282-334 12-65 (130)
170 3rfe_A Platelet glycoprotein I 94.9 0.038 1.3E-06 46.0 5.6 54 304-359 11-67 (130)
171 1njg_A DNA polymerase III subu 94.2 0.035 1.2E-06 51.3 4.4 79 14-93 125-228 (250)
172 1pgv_A TMD-1, tropomodulin TMD 94.2 0.044 1.5E-06 49.1 4.7 43 318-360 64-111 (197)
173 2v1u_A Cell division control p 93.2 0.48 1.6E-05 47.2 11.2 176 4-180 117-353 (387)
174 2qby_B CDC6 homolog 3, cell di 93.0 0.31 1.1E-05 48.7 9.3 175 3-180 121-341 (384)
175 1fnn_A CDC6P, cell division co 92.6 0.53 1.8E-05 47.0 10.3 199 5-204 113-385 (389)
176 1hqc_A RUVB; extended AAA-ATPa 87.7 0.23 8E-06 48.3 2.6 120 15-136 90-262 (324)
177 2chg_A Replication factor C sm 86.7 0.54 1.8E-05 42.4 4.3 39 14-52 101-141 (226)
178 1sxj_B Activator 1 37 kDa subu 81.8 0.65 2.2E-05 44.9 2.7 81 13-95 105-212 (323)
179 2qby_A CDC6 homolog 1, cell di 80.9 3.2 0.00011 41.0 7.5 173 5-179 116-349 (386)
180 1iqp_A RFCS; clamp loader, ext 59.6 5.6 0.00019 38.2 3.4 39 14-52 109-149 (327)
181 1jr3_A DNA polymerase III subu 42.7 14 0.00049 36.0 3.3 39 14-52 118-158 (373)
182 2gkw_B Tumor necrosis factor r 30.7 29 0.001 18.7 1.7 17 36-52 3-19 (26)
183 3acd_A Hypoxanthine-guanine ph 28.4 32 0.0011 29.9 2.7 37 12-49 93-130 (181)
184 3kty_A Probable methyltransfer 23.2 91 0.0031 26.6 4.7 44 6-51 2-45 (173)
185 2chq_A Replication factor C sm 22.4 51 0.0018 31.0 3.3 39 14-52 101-141 (319)
186 3ec2_A DNA replication protein 22.2 30 0.001 29.6 1.3 38 15-52 100-142 (180)
187 1d2n_A N-ethylmaleimide-sensit 21.0 72 0.0025 29.3 3.9 19 8-26 117-135 (272)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=8.1e-33 Score=297.23 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=153.1
Q ss_pred hHHHHHHHHHhcCc-eEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC-------------h-------HHHHHhc
Q 035853 2 EQRKTALHDYLRNK-RYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC-------------S-------DEIFSLC 60 (581)
Q Consensus 2 ~~l~~~l~~~L~~k-r~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~-------------~-------~~~~~Lf 60 (581)
++++..+++.|++| ||||||||||+.+++ .+.. .+||+||||||+ | +|||+||
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf 302 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFL 302 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHH
Confidence 35789999999996 999999999999865 2222 179999999997 1 9999999
Q ss_pred -cc-ccCccccCCC-CChh-hHHhhcCCcchhhhhhccc-c--ceeccc-c---cccc--c--ccceeccccCchhhhHH
Q 035853 61 -RL-ENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN-S--LVENMR-L---TWRI--Q--KWPLLFSIVELPQHLKL 125 (581)
Q Consensus 61 -~~-f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~-t--~~~~~~-~---~~~~--~--~~~L~~sY~~L~~~lk~ 125 (581)
++ |+.. ..++ ++++ +|+++|+|+||||+++|+. . .|+... + .|.. . .++|++||++||+++|.
T Consensus 303 ~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~ 380 (549)
T 2a5y_B 303 EAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380 (549)
T ss_dssp HHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred HHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHH
Confidence 77 7642 2234 7899 9999999999999999998 1 111110 0 1211 1 78999999999999999
Q ss_pred HHh-----------hhcccCCCceechHHHHHHHHhc--CCCCC-----ChHHHHHHHHHHHHhCCceeeeeccCCCCEe
Q 035853 126 CCL-----------YLSAFRDAFEIATKELYQLWIAE--GFIPD-----NSEKTAEEYLEQLISRGFIKVKKRRAGGTIK 187 (581)
Q Consensus 126 cFl-----------~~a~Fp~~~~i~~~~Li~~w~a~--g~i~~-----~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~ 187 (581)
||+ |||+||+|+.|+ +++|+|+ ||+.. ..+++++ ||++|+++||++....+ ...
T Consensus 381 ~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~ 452 (549)
T 2a5y_B 381 CVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVL 452 (549)
T ss_dssp HHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSC
T ss_pred HHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---Cce
Confidence 999 999999999998 8999999 99975 4788888 99999999999988743 346
Q ss_pred EEEeChHHHHHHHHhccccccc
Q 035853 188 TCYISFITRGMLVLVAEFVEFV 209 (581)
Q Consensus 188 ~~~mHdli~dl~~~i~~~e~~~ 209 (581)
+|+|||+||++|++++.+++..
T Consensus 453 ~~~mHdlv~~~a~~~~~~~~~~ 474 (549)
T 2a5y_B 453 TFKIDHIIHMFLKHVVDAQTIA 474 (549)
T ss_dssp EEECCHHHHHHHHTTSCTHHHH
T ss_pred EEEeChHHHHHHHHHHHHHHHH
Confidence 7999999999999999887653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=8e-30 Score=285.86 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=56.2
Q ss_pred CCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEE
Q 035853 471 LPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550 (581)
Q Consensus 471 l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 550 (581)
+++|+.|++++|.+.+.. |..++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|++|
T Consensus 631 l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYI-PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred cccccEEECcCCcccccC-CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 345555555555554443 3445556666666666664444666666666677777777666555666666677777777
Q ss_pred EeeCCC---------------------------HHHHHHHhhccCCcce-eEEeccCCC
Q 035853 551 ELWWPR---------------------------FELRETLRKFEDREQY-DIQIYPYGM 581 (581)
Q Consensus 551 ~l~~c~---------------------------~~~~~~~~~~~~~~~~-~i~hip~~~ 581 (581)
++++|+ .-+ ..|.. ..+++| +|+|+|.++
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~-~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDP-SNADGYAHHQRSHHHH 766 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCS-CC--------------
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCC-CccCCCCCCCCccccC
Confidence 766652 001 14455 678889 999999764
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.7e-27 Score=251.20 Aligned_cols=301 Identities=19% Similarity=0.159 Sum_probs=251.0
Q ss_pred cCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCC
Q 035853 235 TNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSL 313 (581)
Q Consensus 235 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i 313 (581)
....++..+.++++.|.+.++.... .. ...|.++++|++|+|++|.++.+ |..++++++|++|++++|.+
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~n~l~~------~~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGKNRIKT------LN---QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCE------EC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcCcCCCCCCCCCcEEECCCCccce------EC---HhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 3344565557899999999988754 22 46889999999999999999854 78899999999999999999
Q ss_pred cccChh-hhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc-hhhh
Q 035853 314 KHLPSS-LCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT-QDIL 389 (581)
Q Consensus 314 ~~lp~~-i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l 389 (581)
+.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|.+....+..++.+++|+.|++.++. ..+ +..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 988864 78999999999999988766 5568899999999999999987777889999999999999998 444 4568
Q ss_pred CCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCccc
Q 035853 390 GRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPA 467 (581)
Q Consensus 390 ~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~ 467 (581)
.++++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| ......+|++|++++|.++......
T Consensus 173 ~~l~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~l~~~~~-------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 173 SHLHGLIVLRLRHLN--INAIRDYSFKRLYRLKVLEISHWPY-------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp TTCTTCCEEEEESCC--CCEECTTCSCSCTTCCEEEEECCTT-------CCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred cccCCCcEEeCCCCc--CcEeChhhcccCcccceeeCCCCcc-------ccccCcccccCccccEEECcCCcccccCHHH
Confidence 999999999999996 5555566788999999999998441 2 566 5556679999999999987666567
Q ss_pred ccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCCCCCcc-cccCCC
Q 035853 468 LEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYLKILPE-ELWRIK 545 (581)
Q Consensus 468 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~ 545 (581)
++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ |..+..+++|+.|++++|. +..+|. .+..++
T Consensus 244 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 320 (477)
T 2id5_A 244 VRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVG 320 (477)
T ss_dssp HTTCTTCCEEECCSSCCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGG
T ss_pred hcCccccCeeECCCCcCCccC-hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCc
Confidence 999999999999998876433 4457889999999999985 5544 6778899999999999996 555554 578899
Q ss_pred CccEEEeeCCC
Q 035853 546 SLTKLELWWPR 556 (581)
Q Consensus 546 ~L~~L~l~~c~ 556 (581)
+|++|++++||
T Consensus 321 ~L~~L~l~~N~ 331 (477)
T 2id5_A 321 NLETLILDSNP 331 (477)
T ss_dssp GCCEEECCSSC
T ss_pred ccCEEEccCCC
Confidence 99999999887
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=4.4e-28 Score=271.75 Aligned_cols=270 Identities=19% Similarity=0.148 Sum_probs=199.2
Q ss_pred cCCceeEEEecCcccc-cCCCcccCc-CCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCccc-ccchh-hhcCCCCc
Q 035853 276 WFKFLRLLDLGTIVLD-EYPAGINPL-LLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYIH-HTPDE-IWKMNELR 350 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~-~lp~~i~~l-~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~-i~~l~~L~ 350 (581)
.+++|++|++++|.++ .+|..+... ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 3444444444444444 455555443 66666666666665 55666666666666666666553 56654 56666666
Q ss_pred EeecCCcccCCCCCCccCCCC-CCcEeceecCC--CcchhhhCC--CCCCCeEEEeeecccchhchhhhcCCCCCCCEEE
Q 035853 351 HLNFGSITLPAHPGKCCSSLE-NLNFISVLHPS--SCTQDILGR--LPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLK 425 (581)
Q Consensus 351 ~L~l~~~~~~~~~p~~i~~l~-~L~~L~l~~~~--~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~ 425 (581)
+|++++|.+.+.+|..+.+++ +|+.|++.++. ...+..+.. +++|+.|++++|. .....|..+..+++|+.|+
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEE
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEE
Confidence 666666666656666666665 66666666665 344455544 6677777777775 5556777777788888888
Q ss_pred eecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEE
Q 035853 426 LVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVM 502 (581)
Q Consensus 426 l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 502 (581)
++++. + .+| .++.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+..+++|+.|
T Consensus 425 Ls~N~--------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L 495 (768)
T 3rgz_A 425 LSFNY--------LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWI 495 (768)
T ss_dssp CCSSE--------EESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEE
T ss_pred CcCCc--------ccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEE
Confidence 87744 5 567 7888999999999999988888889999999999999998887655 5567889999999
Q ss_pred EecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 503 HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 503 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++++|.....+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 999997666889999999999999999998878899999999999999999885
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=3.3e-27 Score=258.17 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=93.9
Q ss_pred CCCCeeEEEEEecccCCCccc-cc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWE-HF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~-~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~ 296 (581)
.+..++++.+. +.....++. .+ +++|++|.+.++.... .. +..|.++++|++|++++|.++.+ |..
T Consensus 30 ~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~------i~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 30 IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRCEIET------IE---DKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCCcccc------cC---HHHhhchhhcCEeECCCCcccccChhh
Confidence 55778888887 544433333 44 7888888888776543 22 45677888888888888887755 677
Q ss_pred ccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccc--ccchhhhcCCCCcEeecCCcccCC
Q 035853 297 INPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIH--HTPDEIWKMNELRHLNFGSITLPA 361 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~ 361 (581)
++++++|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 888888888888888877655 56777888888888888665 467777778888888777776543
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.1e-27 Score=252.50 Aligned_cols=314 Identities=17% Similarity=0.134 Sum_probs=234.9
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCc
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~ 296 (581)
.+..++++.+. +...... +..+ +++|++|.+.++.... ... ...|..+++|++|++++|.++. .|..
T Consensus 28 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-----~i~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 98 (455)
T 3v47_A 28 LPAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPGL-----VIR---NNTFRGLSSLIILKLDYNQFLQLETGA 98 (455)
T ss_dssp CCTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTTC-----EEC---TTTTTTCTTCCEEECTTCTTCEECTTT
T ss_pred CCCccCEEEec-CCccCcCChhHhccCccccEEECcCCcccc-----eEC---cccccccccCCEEeCCCCccCccChhh
Confidence 55778889888 5444333 4445 8899999998886532 122 4678889999999999999884 4778
Q ss_pred ccCcCCCcEEeccCCCCcc-cChh--hhcccCCcEEEecCCccccc-chh-hhcCCCCcEeecCCcccCCCCCCccCCC-
Q 035853 297 INPLLLLKYLVLNIPSLKH-LPSS--LCNLLSLHTLDMRWSYIHHT-PDE-IWKMNELRHLNFGSITLPAHPGKCCSSL- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l- 370 (581)
++++++|++|++++|.++. .|.. ++++++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+..+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 8899999999999998874 4544 88899999999999988776 544 7889999999999998887777666655
Q ss_pred -CCCcEeceecCC-Ccch---------hhhCCCCCCCeEEEeeecccchhchhhhcCC----------------------
Q 035853 371 -ENLNFISVLHPS-SCTQ---------DILGRLPSLQTFRVHENLSSYQSMLSNNLCP---------------------- 417 (581)
Q Consensus 371 -~~L~~L~l~~~~-~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~---------------------- 417 (581)
.+|+.|++.++. ...+ ..+..+++|+.|+++++. .....+..+..
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchhhhhccccccceeeEeecccccccccc
Confidence 567777766665 2211 113355677888887775 33333332211
Q ss_pred -----------------CCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeE
Q 035853 418 -----------------LLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVL 477 (581)
Q Consensus 418 -----------------~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 477 (581)
.++|+.|+++++. + ..| +++.+++|++|++++|.+.+..+..++.+++|++|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSK--------IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSC--------CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred chhhhccCcccccccccccCceEEEecCcc--------ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 1345555555533 5 346 88999999999999999887777789999999999
Q ss_pred EEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCCCCCcc-cccCCCCccEEEeeCC
Q 035853 478 KLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYLKILPE-ELWRIKSLTKLELWWP 555 (581)
Q Consensus 478 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c 555 (581)
++++|.+.+. .+..+..+++|+.|++++|. +..+ |..+..+++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus 329 ~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 329 NLSQNFLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp ECCSSCCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCc-ChhHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCC
Confidence 9999887443 35567889999999999985 5555 7788999999999999997 445654 5689999999999987
Q ss_pred C
Q 035853 556 R 556 (581)
Q Consensus 556 ~ 556 (581)
+
T Consensus 406 ~ 406 (455)
T 3v47_A 406 P 406 (455)
T ss_dssp C
T ss_pred C
Confidence 5
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.8e-27 Score=259.26 Aligned_cols=308 Identities=16% Similarity=0.176 Sum_probs=257.9
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEeccc-ccccccchhhhhhhHHHhccC------CceeEEEecCccccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVE-RKHLSEDVFTLEYCNAICKWF------KFLRLLDLGTIVLDE 292 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~------~~Lr~L~L~~~~l~~ 292 (581)
....+++.+..+.....++..+ +++|+.|.+.++. ... ... +..+..+ ++|++|++++|.++.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-----~~l---p~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-----EQL---KDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-----HHH---HHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-----ccc---hHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 4678899999444455567766 9999999999987 421 022 4555554 999999999999999
Q ss_pred CCC--cccCcCCCcEEeccCCCCc-ccChhhhcccCCcEEEecCCcccccchhhhcCCC-CcEeecCCcccCCCCCCccC
Q 035853 293 YPA--GINPLLLLKYLVLNIPSLK-HLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNE-LRHLNFGSITLPAHPGKCCS 368 (581)
Q Consensus 293 lp~--~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i~ 368 (581)
+|. .++++++|++|++++|.+. .+| .++++++|++|++++|.+..+|..++.+++ |++|++++|.+. .+|..++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 998 8999999999999999999 999 999999999999999999999999999999 999999999998 8898887
Q ss_pred CCC--CCcEeceecCC--CcchhhhC-------CCCCCCeEEEeeecccchhchhhh-cCCCCCCCEEEeecCCcccCCc
Q 035853 369 SLE--NLNFISVLHPS--SCTQDILG-------RLPSLQTFRVHENLSSYQSMLSNN-LCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 369 ~l~--~L~~L~l~~~~--~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.++ +|+.|++.++. ...+..+. .+++|+.|++++|. .. .+|.. +..+++|+.|+++++.
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L~~L~Ls~N~------ 468 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPLSSINLMGNM------ 468 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCCSEEECCSSC------
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCCCEEECCCCC------
Confidence 765 89999999998 55666676 78899999999996 33 55544 4568999999999866
Q ss_pred ccc-cCC-CC-CC-------CCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEe
Q 035853 437 SSI-VLP-EY-QF-------PPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHL 504 (581)
Q Consensus 437 l~l-~lp-~~-~~-------l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 504 (581)
+ .+| .. .. +++|++|++++|.++ ..+..+. .+++|+.|++++|.+.+ ++..+..+++|+.|++
T Consensus 469 --l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 469 --LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp --CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEEC
T ss_pred --CCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEEC
Confidence 6 777 32 22 339999999999987 5666776 99999999999999876 4667778999999999
Q ss_pred cC------CCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 505 KS------MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 505 ~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++ |.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 54 444667888999999999999999985 88998765 899999999996
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=7.1e-27 Score=241.24 Aligned_cols=286 Identities=19% Similarity=0.195 Sum_probs=204.5
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~ 321 (581)
.++++.|.+.++.... .+ ...+..+++|++|+++++.++.++ ..++.+++|++|++++|.+..+| ..++
T Consensus 44 l~~l~~l~l~~~~l~~------l~---~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK------LP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GCCCSEEEEESCEESE------EC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCceEEEecCCchhh------CC---hhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 5677777777766533 22 455677777777777777777544 36777777777777777777554 3467
Q ss_pred cccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEE
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~ 399 (581)
++++|++|++++|.+..+|..+ .++++|++|++++|.+.+..|..++.+++|++|++.++. ... .++.+++|+.|+
T Consensus 115 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~ 192 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 192 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceee
Confidence 7777777777777777777664 667777777777777765555567777777777777766 222 233455555555
Q ss_pred Eeeeccc----------------chhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 400 VHENLSS----------------YQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 400 l~~~~~~----------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
++++.-. ....++. ...++|+.|+++++. + ..+++..+++|++|++++|.+.+
T Consensus 193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~--------l~~~~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 193 VSYNLLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp CCSSCCSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSC--------CCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred cccccccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCC--------CcccHHHcCCCCccEEECCCCcCCC
Confidence 5554300 1111121 123456666666543 4 44477889999999999999887
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..++.+++|+.|++++|.+.+. +.....+++|+.|++++| .+..+|..+..+++|+.|++++|+ +..+| +.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~ 336 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LS 336 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred cChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--ch
Confidence 7778899999999999998887653 455678999999999998 677888888899999999999997 55565 67
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|++|++++||
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 89999999999998
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.2e-27 Score=262.24 Aligned_cols=311 Identities=16% Similarity=0.168 Sum_probs=247.1
Q ss_pred CCCCeeEEEEEecccCCC------------------ccccc----CCcccEEEEecccccccccchhhhhhhHHHhccCC
Q 035853 221 SLEDFKRISVCRTVTNFD------------------SWEHF----DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK 278 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (581)
...+.+.+.+. +..... ++..+ +++|++|.+.++.... .. +..+.+++
T Consensus 204 ~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~------~~---p~~l~~l~ 273 (636)
T 4eco_A 204 RLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT------KL---PTFLKALP 273 (636)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS------SC---CTTTTTCS
T ss_pred cccCCCEEECc-CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc------cC---hHHHhcCC
Confidence 45678888888 544443 45443 6888999998886543 22 57788889
Q ss_pred ceeEEEecCcc-cc--cCCCcccCc------CCCcEEeccCCCCcccCh--hhhcccCCcEEEecCCccc-ccchhhhcC
Q 035853 279 FLRLLDLGTIV-LD--EYPAGINPL------LLLKYLVLNIPSLKHLPS--SLCNLLSLHTLDMRWSYIH-HTPDEIWKM 346 (581)
Q Consensus 279 ~Lr~L~L~~~~-l~--~lp~~i~~l------~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~-~lp~~i~~l 346 (581)
+|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+. .+| .++.+
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l 352 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE 352 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC
Confidence 99999999998 77 488777776 899999999998888888 8889999999999999877 888 78888
Q ss_pred CCCcEeecCCcccCCCCCCccCCCCC-CcEeceecCC-CcchhhhCCCC--CCCeEEEeeecccchhchhhhcC------
Q 035853 347 NELRHLNFGSITLPAHPGKCCSSLEN-LNFISVLHPS-SCTQDILGRLP--SLQTFRVHENLSSYQSMLSNNLC------ 416 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~------ 416 (581)
++|++|++++|.+. .+|..++.+++ |++|++.++. ..++..+..++ +|+.|++++|. .....|..+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE--IGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSC--TTTTTTCSSCTTCSSC
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCc--CCCcchhhhccccccc
Confidence 99999999998887 78888888888 9999998888 66676666554 88999999887 6666777777
Q ss_pred -CCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccC-------CCCCCeEEEecCccc
Q 035853 417 -PLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEK-------LPHLRVLKLKKNSFF 485 (581)
Q Consensus 417 -~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~-------l~~L~~L~L~~~~~~ 485 (581)
.+.+|+.|+++++. + .+| .+..+++|++|++++|.++......+.. +++|+.|++++|.+.
T Consensus 430 ~~~~~L~~L~Ls~N~--------l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 430 FKGINVSSINLSNNQ--------ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp CCCCCEEEEECCSSC--------CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccCCCCCEEECcCCc--------cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 77789999998866 6 777 3556899999999999887322223332 338999999988887
Q ss_pred CceeeeCCC--CCCCCcEEEecCCCcccccccCcccccccceEeec------cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 486 GRKLVCSSG--GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN------PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 486 ~~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++.... .+++|+.|++++| .+..+|..+..+++|+.|+++ +|...+.+|..+..+++|++|++++|.
T Consensus 502 --~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 502 --KLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp --BCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred --ccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 3344454 8999999999998 466689889999999999995 455667889999999999999999997
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1e-26 Score=236.16 Aligned_cols=299 Identities=16% Similarity=0.148 Sum_probs=235.8
Q ss_pred CCCCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
....++++.+. +.....++.-. +++|++|.+.++.... .+.+..+++|++|++++|.++.+| .+..
T Consensus 42 ~l~~L~~L~l~-~~~i~~~~~~~~~~~L~~L~l~~n~i~~-----------~~~~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 42 ELESITKLVVA-GEKVASIQGIEYLTNLEYLNLNGNQITD-----------ISPLSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp HHTTCSEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred hcccccEEEEe-CCccccchhhhhcCCccEEEccCCcccc-----------chhhhcCCcCCEEEccCCcccCch-HHcC
Confidence 34567888888 55544344322 8999999999887643 123889999999999999988775 5889
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
+++|++|++++|.+..+|. +..+++|++|++++| .+..++ .+..+++|++|++++|.+... +. ++.+++|+.|++
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCc-hh-hccCCCCCEEEc
Confidence 9999999999999988876 889999999999999 455544 488999999999999987643 32 788999999999
Q ss_pred ecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEe
Q 035853 379 LHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLS 456 (581)
Q Consensus 379 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~ 456 (581)
.++. ...+. +..+++|+.|+++++. .... +. +..+++|+.|+++++. + .+|.+..+++|++|+++
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~~-~~-~~~~~~L~~L~l~~n~--------l~~~~~~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQ--ITDI-TP-VANMTRLNSLKIGNNK--------ITDLSPLANLSQLTWLEIG 251 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSC--CCCC-GG-GGGCTTCCEEECCSSC--------CCCCGGGTTCTTCCEEECC
T ss_pred cCCccccccc-ccCCCccceeecccCC--CCCC-ch-hhcCCcCCEEEccCCc--------cCCCcchhcCCCCCEEECC
Confidence 9888 44443 7788999999999885 3322 22 6778899999999865 5 55556788999999999
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCC
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKI 536 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 536 (581)
+|.++. .+.+..+++|++|++++|.+.+. ..+..+++|+.|++++|......+..++.+++|+.|++++|+. ..
T Consensus 252 ~n~l~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~ 325 (347)
T 4fmz_A 252 TNQISD--INAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TD 325 (347)
T ss_dssp SSCCCC--CGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CC
T ss_pred CCccCC--ChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-cc
Confidence 998765 36788999999999999887664 2367889999999999964445566678899999999999984 44
Q ss_pred CcccccCCCCccEEEeeCCC
Q 035853 537 LPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 537 lp~~l~~l~~L~~L~l~~c~ 556 (581)
++. +..+++|++|++++|+
T Consensus 326 ~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 326 IRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CGG-GGGCTTCSEESSSCC-
T ss_pred ccC-hhhhhccceeehhhhc
Confidence 544 7889999999999998
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=7.5e-27 Score=260.73 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=252.9
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEeccc-ccccccchhhhhhhHHHh-------ccCCceeEEEecCcccc
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVE-RKHLSEDVFTLEYCNAIC-------KWFKFLRLLDLGTIVLD 291 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~Lr~L~L~~~~l~ 291 (581)
....+++.+..+.....++..+ +++|+.|.+.++. ... ... +..+ ..+++|++|++++|.++
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg-----~~i---P~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA-----AQL---KADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH-----HHH---HHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc-----ccc---hHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 4678999998444455567666 9999999999986 321 012 3333 45569999999999999
Q ss_pred cCCC--cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCC-CcEeecCCcccCCCCCCccC
Q 035853 292 EYPA--GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNE-LRHLNFGSITLPAHPGKCCS 368 (581)
Q Consensus 292 ~lp~--~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~i~ 368 (581)
.+|. .++++++|++|++++|.+..+| .++++++|+.|++++|.+..+|..+..+++ |+.|++++|.+. .+|..++
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 9998 8999999999999999999999 899999999999999998899999999999 999999999988 8888887
Q ss_pred CCCC--CcEeceecCC-Ccch----hhhC--CCCCCCeEEEeeecccchhchhhhc-CCCCCCCEEEeecCCcccCCccc
Q 035853 369 SLEN--LNFISVLHPS-SCTQ----DILG--RLPSLQTFRVHENLSSYQSMLSNNL-CPLLHLESLKLVDERTIALQPSS 438 (581)
Q Consensus 369 ~l~~--L~~L~l~~~~-~~~~----~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l~~~~~i~L~~l~ 438 (581)
.++. |+.|+++++. ...+ ..++ .+++|+.|++++|. .. .+|..+ ..+++|+.|+++++.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~-------- 708 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNL-------- 708 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCC--------
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCc--------
Confidence 7765 9999999987 2222 2233 44589999999995 33 566654 478999999999866
Q ss_pred c-cCC-CCC--------CCCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 439 I-VLP-EYQ--------FPPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 439 l-~lp-~~~--------~l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
+ .+| ++. ++++|+.|+|++|.++ ..+..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCC
Confidence 6 777 433 2349999999999987 6667776 99999999999998876 466678999999999987
Q ss_pred ------CCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 507 ------MFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 507 ------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|.....+|..+..+++|+.|++++|.. ..+|..+. ++|+.|++++|+
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 444567888899999999999999986 89998765 799999999997
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5.9e-27 Score=256.18 Aligned_cols=315 Identities=16% Similarity=0.063 Sum_probs=182.3
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCc
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~ 296 (581)
.+..++++.+. +.....+ +..+ +++|++|.+.++.... .. +..|.++++|++|++++|.+. ..|..
T Consensus 31 l~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 31 LPNSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IH---EDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp SCTTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CCCcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccce------eC---hhhccCccccCeeeCCCCcccccChhh
Confidence 55677888887 4444333 4444 7888888888776543 22 466778888888888888877 44667
Q ss_pred ccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCccccc--chhhhcCCCCcEeecCCcccCCCCCCccCCCCCC
Q 035853 297 INPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHT--PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL 373 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~l--p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L 373 (581)
++++++|++|++++|.++.+ |..++++++|++|++++|.+..+ |. +..+++|++|++++|.+.+..|..++.+++|
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChhhhhhhccc
Confidence 88888888888888887765 46677888888888888877665 43 3347788888888877765555556677777
Q ss_pred c--EeceecCC-CcchhhhCCCCC----------------------------------------------------CCeE
Q 035853 374 N--FISVLHPS-SCTQDILGRLPS----------------------------------------------------LQTF 398 (581)
Q Consensus 374 ~--~L~l~~~~-~~~~~~l~~l~~----------------------------------------------------L~~L 398 (581)
+ .|++.++. ...+.......+ |+.|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L 259 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEE
T ss_pred ceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEE
Confidence 6 56555554 222221111122 2222
Q ss_pred EEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCccc---------
Q 035853 399 RVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPA--------- 467 (581)
Q Consensus 399 ~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~--------- 467 (581)
+++++. .....+..+..+++|+.|+++++. + .+| ++..+++|++|++++|.+....+..
T Consensus 260 ~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~--------l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 260 NLQKHY--FFNISSNTFHCFSGLQELDLTATH--------LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTH 329 (606)
T ss_dssp ECTTCC--CSSCCTTTTTTCTTCSEEECTTSC--------CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSE
T ss_pred EeecCc--cCccCHHHhccccCCCEEeccCCc--------cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCE
Confidence 222221 111222234455555555555533 3 444 4444444444444444443333333
Q ss_pred ----------------ccCCCCCCeEEEecCcccCcee-eeCCCCCCCCcEEEecCCCcccccccCcccccccceEeecc
Q 035853 468 ----------------LEKLPHLRVLKLKKNSFFGRKL-VCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINP 530 (581)
Q Consensus 468 ----------------l~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 530 (581)
++.+++|++|++++|.+.+... +..+..+++|+.|++++|......|..+..+++|+.|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 4455555555555554433221 22345566666666666532223344556666677777766
Q ss_pred CcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 531 CAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 531 c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
|......|. .+..+++|++|++++|.
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCc
Confidence 664444333 36667777777777764
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=247.39 Aligned_cols=304 Identities=15% Similarity=0.141 Sum_probs=194.1
Q ss_pred CCCCeeEEEEEecccCCCcc-ccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcc
Q 035853 221 SLEDFKRISVCRTVTNFDSW-EHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGI 297 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i 297 (581)
.+.+++++.+. +......+ ..+ +++|++|.+.++.... .. +..|..+++|++|++++|.++.+|..
T Consensus 19 ~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 19 LSQKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQY------LD---ISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp CCTTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EE---GGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccccEEECC-CCcccccChhhccccccccEEecCCCccCC------cC---hHHhhcccCCCEEecCCCceeecCcc-
Confidence 44788999998 55444343 444 8899999999887643 32 56788999999999999999888876
Q ss_pred cCcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCcccccchhhhcCCCC--cEeecCCccc--CCCCCCccCC--
Q 035853 298 NPLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL--RHLNFGSITL--PAHPGKCCSS-- 369 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~i~~-- 369 (581)
.+++|++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|++++|.+ .+..|..++.
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 78999999999999884 67889999999999999987755 345667777 8888877776 4444444443
Q ss_pred ------------------------CCCCcEeceec---------------------------------------------
Q 035853 370 ------------------------LENLNFISVLH--------------------------------------------- 380 (581)
Q Consensus 370 ------------------------l~~L~~L~l~~--------------------------------------------- 380 (581)
+++|+.|++.+
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence 33333333333
Q ss_pred ------------CC--Ccchhhh-----CCCCCCCeEEEeeecccchhchh-hh-------------------------c
Q 035853 381 ------------PS--SCTQDIL-----GRLPSLQTFRVHENLSSYQSMLS-NN-------------------------L 415 (581)
Q Consensus 381 ------------~~--~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~l~-~~-------------------------l 415 (581)
+. +.++..+ +.+++|+.++++++. . .+| .. .
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~--~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV--F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC--C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccc--e--ecchhhhhcccccCceeEEEcCCCccccccch
Confidence 22 1222222 233333333333221 0 111 00 0
Q ss_pred CCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCC--CCcccccCC-------------------
Q 035853 416 CPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKY--DPMPALEKL------------------- 471 (581)
Q Consensus 416 ~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~--~~~~~l~~l------------------- 471 (581)
..+++|+.|+++++. + .+| +++.+++|++|++++|.+++ ..+..++.+
T Consensus 321 ~~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL--------LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp SSCCCCCEEECCSSC--------CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred hhCCcccEEEeECCc--------cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 345556666665533 3 233 44445555555555544432 222334444
Q ss_pred ------CCCCeEEEecCcccCceeeeCCCCC-CCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccc-ccC
Q 035853 472 ------PHLRVLKLKKNSFFGRKLVCSSGGF-PSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEE-LWR 543 (581)
Q Consensus 472 ------~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-l~~ 543 (581)
++|++|++++|.+.+..+ ..+ ++|+.|++++| .++.+|..+..+++|+.|++++|. +..+|.. +..
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~ 466 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDR 466 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGG----GSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred chhccCccCCEEECcCCCCCcchh----hhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhcc
Confidence 455555555444433221 112 67888888887 567888877899999999999996 5678876 889
Q ss_pred CCCccEEEeeCCC
Q 035853 544 IKSLTKLELWWPR 556 (581)
Q Consensus 544 l~~L~~L~l~~c~ 556 (581)
+++|++|++++||
T Consensus 467 l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 467 LTSLQKIWLHTNP 479 (520)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcccEEECcCCC
Confidence 9999999999887
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.2e-26 Score=233.65 Aligned_cols=278 Identities=17% Similarity=0.196 Sum_probs=235.6
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++++
T Consensus 43 l~~L~~L~l~~~~i~~-----------~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-----------IQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred cccccEEEEeCCcccc-----------chhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCC
Confidence 7899999999987743 2457889999999999999998876 899999999999999999876 69999
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..+|. +..+++|++|++++|......+ .+..+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 110 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC
Confidence 999999999999999887 8899999999999997665444 58999999999999998 43333 88999999999999
Q ss_pred ecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEec
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKK 481 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 481 (581)
|. . ..++. +..+++|+.|+++++. + .++.+..+++|++|++++|.++... .++.+++|++|++++
T Consensus 187 n~--l-~~~~~-~~~l~~L~~L~l~~n~--------l~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 187 NQ--I-EDISP-LASLTSLHYFTAYVNQ--------ITDITPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGT 252 (347)
T ss_dssp SC--C-CCCGG-GGGCTTCCEEECCSSC--------CCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCS
T ss_pred Cc--c-ccccc-ccCCCccceeecccCC--------CCCCchhhcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCC
Confidence 85 2 33333 7788999999999855 4 3334667899999999999876543 389999999999999
Q ss_pred CcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 482 NSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|.+.+. ..+..+++|+.|++++| .+..++. +..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 253 n~l~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 253 NQISDI---NAVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp SCCCCC---GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred CccCCC---hhHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 987653 24678999999999998 5777753 7889999999999998766677789999999999999998
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=8.6e-27 Score=260.27 Aligned_cols=310 Identities=14% Similarity=0.117 Sum_probs=233.4
Q ss_pred CCCCeeEEEEEecccCCC------------------ccccc----CCcccEEEEecccccccccchhhhhhhHHHhccCC
Q 035853 221 SLEDFKRISVCRTVTNFD------------------SWEHF----DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK 278 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~------------------~~~~~----~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (581)
...+.+.+.+. ++.... ++..+ +++|+.|.+.++.... .. +..+.+++
T Consensus 446 ~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~------~i---P~~l~~L~ 515 (876)
T 4ecn_A 446 RLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT------QL---PDFLYDLP 515 (876)
T ss_dssp GCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC------SC---CGGGGGCS
T ss_pred cCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc------cC---hHHHhCCC
Confidence 34567888888 444433 44442 6788888888776432 22 46778888
Q ss_pred ceeEEEecCcc-cc--cCCCcccCcC-------CCcEEeccCCCCcccCh--hhhcccCCcEEEecCCcccccchhhhcC
Q 035853 279 FLRLLDLGTIV-LD--EYPAGINPLL-------LLKYLVLNIPSLKHLPS--SLCNLLSLHTLDMRWSYIHHTPDEIWKM 346 (581)
Q Consensus 279 ~Lr~L~L~~~~-l~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~l~~lp~~i~~l 346 (581)
+|++|++++|. ++ .+|..++.+. +|++|++++|.+..+|. .++++++|++|++++|.+..+| .++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L 594 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTN 594 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTT
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCC
Confidence 88888888887 76 3776666555 88888888888888887 7888888888888888777888 68888
Q ss_pred CCCcEeecCCcccCCCCCCccCCCCC-CcEeceecCC-CcchhhhCCCCC--CCeEEEeeecccchhchh---hhcC--C
Q 035853 347 NELRHLNFGSITLPAHPGKCCSSLEN-LNFISVLHPS-SCTQDILGRLPS--LQTFRVHENLSSYQSMLS---NNLC--P 417 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~l~~~~-~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~---~~l~--~ 417 (581)
++|+.|++++|.+. .+|..+.++++ |+.|++.++. ..++..+..++. |+.|++++|. .....| ..+. .
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc--CCCccccchhhhcccc
Confidence 88888888888887 78878888888 8888888887 666666665544 8888888885 333222 2223 2
Q ss_pred CCCCCEEEeecCCcccCCcccc-cCC-C-CCCCCCccEEEEeeccCCCCCccccc--------CCCCCCeEEEecCcccC
Q 035853 418 LLHLESLKLVDERTIALQPSSI-VLP-E-YQFPPRLIELSLSNTELKYDPMPALE--------KLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 418 ~~~L~~L~l~~~~~i~L~~l~l-~lp-~-~~~l~~L~~L~L~~~~l~~~~~~~l~--------~l~~L~~L~L~~~~~~~ 486 (581)
+.+|+.|+++++. + .+| + +..+++|+.|+|++|.+. ..+..+. ++++|+.|+|++|.+.
T Consensus 672 ~~~L~~L~Ls~N~--------L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~- 741 (876)
T 4ecn_A 672 GINASTVTLSYNE--------IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT- 741 (876)
T ss_dssp CCCEEEEECCSSC--------CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-
T ss_pred CCCcCEEEccCCc--------CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-
Confidence 3478888888765 6 788 4 457899999999999876 3333322 3348999999998887
Q ss_pred ceeeeCCC--CCCCCcEEEecCCCcccccccCcccccccceEeecc------CcCCCCCcccccCCCCccEEEeeCCC
Q 035853 487 RKLVCSSG--GFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINP------CAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 487 ~~~~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++..+. .+++|+.|+|++| .+..+|..+..+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 742 -~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 742 -SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp -CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred -cchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 3344454 8999999999998 5667898899999999999977 55567889999999999999999997
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.5e-26 Score=249.28 Aligned_cols=165 Identities=22% Similarity=0.192 Sum_probs=122.4
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc------c----cCCccc-----c-cC-C--CCCCCCCcc
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT------I----ALQPSS-----I-VL-P--EYQFPPRLI 451 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~------i----~L~~l~-----l-~l-p--~~~~l~~L~ 451 (581)
.+++|+.|+++++.-......+..+..+++|+.|+++++.- + .|+.+. + .. | .+..+++|+
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 34555555555553111111255666777888888877431 1 222222 3 22 3 578899999
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeecc
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINP 530 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~ 530 (581)
+|++++|.+....+..++.+++|++|++++|.+.+..++..+..+++|+.|++++|. +..+ |..+..+++|+.|++++
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCC
Confidence 999999988777788899999999999999988765667778999999999999985 5555 77889999999999999
Q ss_pred CcCCCCCcccccCCCCccEEEeeCCC
Q 035853 531 CAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 531 c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|......|..+.++++|++|++++||
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCc
Confidence 97555455678999999999999865
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-26 Score=249.90 Aligned_cols=286 Identities=20% Similarity=0.209 Sum_probs=217.1
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccCh-hhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPS-SLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~ 321 (581)
.++++.+.+.++.... .+ ...+..+++|++|++++|.++.++ ..++.+++|++|+|++|.+..+|+ .++
T Consensus 50 l~~l~~l~l~~~~l~~------lp---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRK------LP---AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GCCCSEEEESSCEESE------EC---THHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCceEEEeeCCCCCC------cC---HHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 6788888887776643 33 566788888888888888888554 478888888888888888886664 468
Q ss_pred cccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEE
Q 035853 322 NLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFR 399 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~ 399 (581)
++++|++|++++|.+..+|..+ +.+++|++|++++|.+.+..|..++.+++|++|+++++. ... .++.+++|+.|+
T Consensus 121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~ 198 (597)
T 3oja_B 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHAN 198 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEE
T ss_pred CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--Chhhhhhhhhhh
Confidence 8888888888888888888764 788888888888888877667778888888888888877 332 244566677776
Q ss_pred Eeeeccc----------------chhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 400 VHENLSS----------------YQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 400 l~~~~~~----------------~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
++++.-. ....++..+ .++|+.|+++++. + ..+++..+++|+.|+|++|.+.+
T Consensus 199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~--------l~~~~~l~~l~~L~~L~Ls~N~l~~ 268 (597)
T 3oja_B 199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN--------LTDTAWLLNYPGLVEVDLSYNELEK 268 (597)
T ss_dssp CCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC--------CCCCGGGGGCTTCSEEECCSSCCCE
T ss_pred cccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC--------CCCChhhccCCCCCEEECCCCccCC
Confidence 6665300 011111111 1345555555433 4 33377889999999999999888
Q ss_pred CCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCccccc
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
..+..++.+++|+.|+|++|.+.+ ++.....+|+|+.|++++| .+..+|..+..+++|+.|++++|. +..+| +.
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~ 342 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LS 342 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CC
T ss_pred CCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hh
Confidence 778889999999999999988765 3555677999999999998 577888888999999999999997 45555 67
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
.+++|+.|++++||
T Consensus 343 ~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 343 THHTLKNLTLSHND 356 (597)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hcCCCCEEEeeCCC
Confidence 88999999999998
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.1e-25 Score=246.25 Aligned_cols=274 Identities=18% Similarity=0.139 Sum_probs=181.5
Q ss_pred ceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 356 (581)
.|+.|+++++.++.++. .++.+++|++|++++|.++.+|..++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 56777777777775543 47888899999999999989998888999999999999987766 45678899999999999
Q ss_pred cccCCCCCCc-cCCCCCCcEeceecCC-Ccc---hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 357 ITLPAHPGKC-CSSLENLNFISVLHPS-SCT---QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 357 ~~~~~~~p~~-i~~l~~L~~L~l~~~~-~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
|.+.+.+|.. ++.+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+..+++|+.|+++++.-
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE--PLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS--CEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc--CCcCCHHHhcCCccCCeEECCCCcC
Confidence 8887666654 8888999999988887 322 5678888999999998886 5556677788888888888887430
Q ss_pred --------c----cCCccc-----c--cCC-CCCCCCCccEEEEeeccCCCC---CcccccCCCCCCeEEEecCcccCce
Q 035853 432 --------I----ALQPSS-----I--VLP-EYQFPPRLIELSLSNTELKYD---PMPALEKLPHLRVLKLKKNSFFGRK 488 (581)
Q Consensus 432 --------i----~L~~l~-----l--~lp-~~~~l~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~L~~~~~~~~~ 488 (581)
+ .|+.+. + ..| ++..+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 0 111111 2 122 344455555555555544331 1123445555555555554443222
Q ss_pred eeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 489 LVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 489 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..+..+++|+.|++++|......|..+..+++| .|++++|......|..+..+++|+.|++++||
T Consensus 493 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 493 -QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp -TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred -hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 3334555666666666654333344455566666 66666665444445556666777777777765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.4e-26 Score=243.88 Aligned_cols=313 Identities=13% Similarity=0.097 Sum_probs=219.2
Q ss_pred eEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCc
Q 035853 226 KRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLK 304 (581)
Q Consensus 226 r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr 304 (581)
+++.+. +.....++..+.++++.|.+.++.... .. +..|.++++|++|++++|.++.+ |..++++++|+
T Consensus 3 ~~l~ls-~n~l~~ip~~~~~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 3 FLVDRS-KNGLIHVPKDLSQKTTILNISQNYISE------LW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72 (520)
T ss_dssp CEEECT-TSCCSSCCCSCCTTCSEEECCSSCCCC------CC---HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCC
T ss_pred ceEecC-CCCcccccccccccccEEECCCCcccc------cC---hhhccccccccEEecCCCccCCcChHHhhcccCCC
Confidence 345555 444444665557899999999998754 33 57899999999999999999955 77899999999
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCCC--cEeceec
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENL--NFISVLH 380 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~l~~ 380 (581)
+|++++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..++.+++| +.|++.+
T Consensus 73 ~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 73 YLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp EEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred EEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999999999999977 89999999999998875 67899999999999999998864 356677777 9999888
Q ss_pred CC----CcchhhhCC--------------------------CC-------------------------------------
Q 035853 381 PS----SCTQDILGR--------------------------LP------------------------------------- 393 (581)
Q Consensus 381 ~~----~~~~~~l~~--------------------------l~------------------------------------- 393 (581)
+. ...+..+.. ++
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l 227 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEE
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccc
Confidence 64 122222222 22
Q ss_pred --------------------CCCeEEEeeecccchhchhhhc-----CCCCCCCEEEeecCCc-c------------cCC
Q 035853 394 --------------------SLQTFRVHENLSSYQSMLSNNL-----CPLLHLESLKLVDERT-I------------ALQ 435 (581)
Q Consensus 394 --------------------~L~~L~l~~~~~~~~~~l~~~l-----~~~~~L~~L~l~~~~~-i------------~L~ 435 (581)
+|+.|+++++. ..+.+|..+ ..+++|+.++++++.- + .++
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVK--LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE--EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeeccc--ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCcee
Confidence 33444444442 233455555 5555555555554220 0 122
Q ss_pred cccc---cCC---CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc-eeeeCCCCCCCCcEEEecCCC
Q 035853 436 PSSI---VLP---EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR-KLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 436 ~l~l---~lp---~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.+.+ .+. ....+++|++|++++|.+++..+..++.+++|++|++++|.+.+. .++..+..+++|+.|++++|.
T Consensus 306 ~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 2222 122 227899999999999999887888999999999999999988752 223446678888888888874
Q ss_pred cccccccC-ccccc----------------------ccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 509 WLEEWTME-NDAMP----------------------KLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 509 ~l~~l~~~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
....+|.. +..++ +|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 33326543 33444 55555555553 33566666677777777777765
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=243.50 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCCCCCCccEEEEeeccCCCCCc-ccccCCCCCCeEEEecCcccCceeeeCCCCC-CCCcEEEecCCCcccccccCcccc
Q 035853 443 EYQFPPRLIELSLSNTELKYDPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGF-PSLKVMHLKSMFWLEEWTMENDAM 520 (581)
Q Consensus 443 ~~~~l~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l 520 (581)
.+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.. ...+ ++|+.|++++| .++.+|..+..+
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~~L~~L~L~~N-~l~~ip~~~~~l 472 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----FRCLPPKVKVLDLHNN-RIMSIPKDVTHL 472 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG----GSSCCTTCSEEECCSS-CCCCCCTTTTSS
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch----hhhhcCcCCEEECCCC-cCcccChhhcCC
Confidence 45566666666666666554222 33556666777777666655433 1233 68999999998 678898888899
Q ss_pred cccceEeeccCcCCCCCccc-ccCCCCccEEEeeCCC
Q 035853 521 PKLESLIINPCAYLKILPEE-LWRIKSLTKLELWWPR 556 (581)
Q Consensus 521 ~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~c~ 556 (581)
++|+.|++++|. +..+|.. +..+++|+.|++++||
T Consensus 473 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 999999999987 5588887 8899999999999987
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.8e-26 Score=227.73 Aligned_cols=234 Identities=21% Similarity=0.211 Sum_probs=193.2
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
...+++.|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+|...+.+|..++.. . ....++.+++|+.|++++|. . ..+|.
T Consensus 159 ~n~~~~~~p~~~~~~------~-------~~~~~~~l~~L~~L~L~~n~--l-~~lp~---------------------- 200 (328)
T 4fcg_A 159 ACPELTELPEPLAST------D-------ASGEHQGLVNLQSLRLEWTG--I-RSLPA---------------------- 200 (328)
T ss_dssp EETTCCCCCSCSEEE------C--------CCCEEESTTCCEEEEEEEC--C-CCCCG----------------------
T ss_pred CCCCccccChhHhhc------c-------chhhhccCCCCCEEECcCCC--c-CcchH----------------------
Confidence 998888888655431 1 11224456777777777774 1 13333
Q ss_pred cccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc
Q 035853 436 PSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM 515 (581)
Q Consensus 436 ~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 515 (581)
+++.+++|++|++++|.+.+ .++.++.+++|++|++++|.+.+.. +..++.+++|+.|++++|.....+|.
T Consensus 201 -------~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 201 -------SIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp -------GGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred -------hhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcch
Confidence 45556677777777777653 5557888999999999988876654 56678899999999999988889998
Q ss_pred CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 516 ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 516 ~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.++.+++|+.|++++|+.++.+|..+.++++|+.+.+..+.
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 89999999999999999999999999999999999887543
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.4e-26 Score=249.31 Aligned_cols=138 Identities=17% Similarity=0.087 Sum_probs=120.5
Q ss_pred CCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCc
Q 035853 236 NFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 236 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~ 314 (581)
...++..+.+++++|.+.++.... .. ...|.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 23 l~~ip~~~~~~l~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 23 LSKVPDDIPSSTKNIDLSFNPLKI------LK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp CSSCCTTSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cccCCCCCCCCcCEEECCCCCcCE------eC---hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 344665557899999999988753 33 46899999999999999999955 667999999999999999999
Q ss_pred cc-ChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC
Q 035853 315 HL-PSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 315 ~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+ |..++++++|++|++++|.+..+| ..++++++|++|++++|.+.+ .+|..++++++|++|++.++.
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 76 788999999999999999998887 668999999999999999875 679999999999999998876
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=2.2e-25 Score=241.24 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=76.5
Q ss_pred CC-CCCCCCCccEEEEeeccCCCCC--cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCc
Q 035853 441 LP-EYQFPPRLIELSLSNTELKYDP--MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEN 517 (581)
Q Consensus 441 lp-~~~~l~~L~~L~L~~~~l~~~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~ 517 (581)
+| +++.+++|++|++++|.+++.. +..++.+++|++|++++|.+.+......+..+++|+.|++++|......|..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 45 6666777777777777665421 23466677777777777666553333345666777777777764333333322
Q ss_pred ccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 518 DAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 518 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. ++|+.|++++|. +..+|..+..+++|++|++++|.
T Consensus 449 ~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 449 P--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp C--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC
T ss_pred c--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC
Confidence 2 689999999885 66888888899999999999986
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.6e-25 Score=233.88 Aligned_cols=303 Identities=16% Similarity=0.156 Sum_probs=197.3
Q ss_pred CCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLL 301 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~ 301 (581)
..++.+.+. +.....++.-. +++|+.|.+.++.... . .+ +..+++|++|++++|.+..++. +++++
T Consensus 46 ~~l~~L~l~-~~~i~~l~~~~~l~~L~~L~Ls~n~l~~------~----~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQAD-RLGIKSIDGVEYLNNLTQINFSNNQLTD------I----TP-LKNLTKLVDILMNNNQIADITP-LANLT 112 (466)
T ss_dssp HTCCEEECC-SSCCCCCTTGGGCTTCCEEECCSSCCCC------C----GG-GTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ccccEEecC-CCCCccCcchhhhcCCCEEECCCCccCC------c----hh-hhccccCCEEECCCCccccChh-hcCCC
Confidence 457777777 54444344322 8888888888876643 1 23 7888888888888888886665 88888
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
+|++|++++|.++.+|. ++++++|++|++++|.+..+|. ++.+++|++|++++ .+. ..+ .++++++|+.|++.++
T Consensus 113 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~-~~~-~~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 113 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVT-DLK-PLANLTTLERLDISSN 187 (466)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCC-CCG-GGTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-ccc-Cch-hhccCCCCCEEECcCC
Confidence 88888888888887765 7888888888888887777664 66666666666642 222 122 2566666666666666
Q ss_pred CCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC--c---c----cCCccc-----c-cCCCCCC
Q 035853 382 SSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER--T---I----ALQPSS-----I-VLPEYQF 446 (581)
Q Consensus 382 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~--~---i----~L~~l~-----l-~lp~~~~ 446 (581)
.-.....+..+++|+.|+++++. .....+ +..+++|+.|+++++. . + .|+.+. + .++.+..
T Consensus 188 ~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 188 KVSDISVLAKLTNLESLIATNNQ--ISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred cCCCChhhccCCCCCEEEecCCc--cccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhc
Confidence 51112335556666666666654 222212 3445555555555532 0 0 111111 2 2223556
Q ss_pred CCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceE
Q 035853 447 PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESL 526 (581)
Q Consensus 447 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 526 (581)
+++|++|++++|.+.+.. .++.+++|+.|++++|.+.+... +..+++|+.|++++| .+..++. +..+++|+.|
T Consensus 264 l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L 336 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRL 336 (466)
T ss_dssp CTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEE
T ss_pred CCCCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCC-cCCCchh-hccCccCCEe
Confidence 777888888777765432 27778888888888777655331 567788888888887 4555544 6788888888
Q ss_pred eeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 527 IINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 527 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
++++|. +..++ .+..+++|+.|++++|+
T Consensus 337 ~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 337 FFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp ECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred ECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 888885 45554 67888999999998887
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=233.47 Aligned_cols=267 Identities=18% Similarity=0.157 Sum_probs=229.4
Q ss_pred CceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
+++++|+|++|.++.+ |..+.++++|++|+|++|.+..+ |..++++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 5899999999999965 56899999999999999999966 77899999999999999999999875 588999999999
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTI 432 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i 432 (581)
++|.+....|..+..+++|+.|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~-- 187 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN--LTSIPTEALSHLHGLIVLRLRHLN-- 187 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC--CSSCCHHHHTTCTTCCEEEEESCC--
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc--CcccChhHhcccCCCcEEeCCCCc--
Confidence 9999987778889999999999999988 3445678899999999999996 555555678899999999999866
Q ss_pred cCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 433 ALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 433 ~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ .++ .+..+++|++|++++|...+..++......+|+.|++++|.+.... ...+..+++|+.|++++|.
T Consensus 188 ------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 188 ------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp ------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCC-HHHHTTCTTCCEEECCSSC-
T ss_pred ------CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccC-HHHhcCccccCeeECCCCc-
Confidence 6 555 6889999999999999877766666667779999999999876432 3346789999999999985
Q ss_pred ccccc-cCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 510 LEEWT-MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 510 l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+..++ ..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 56554 457899999999999998666667889999999999999986
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5e-25 Score=232.80 Aligned_cols=299 Identities=18% Similarity=0.150 Sum_probs=211.0
Q ss_pred CCCCeeEEEEEecccCCCccccc-CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHF-DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~-~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
.....+++.+. +......+.-. +++|+.|.+.++.... . .+ +.++++|++|++++|.++.++. +.+
T Consensus 66 ~l~~L~~L~Ls-~n~l~~~~~~~~l~~L~~L~l~~n~l~~------~----~~-~~~l~~L~~L~L~~n~l~~~~~-~~~ 132 (466)
T 1o6v_A 66 YLNNLTQINFS-NNQLTDITPLKNLTKLVDILMNNNQIAD------I----TP-LANLTNLTGLTLFNNQITDIDP-LKN 132 (466)
T ss_dssp GCTTCCEEECC-SSCCCCCGGGTTCTTCCEEECCSSCCCC------C----GG-GTTCTTCCEEECCSSCCCCCGG-GTT
T ss_pred hhcCCCEEECC-CCccCCchhhhccccCCEEECCCCcccc------C----hh-hcCCCCCCEEECCCCCCCCChH-HcC
Confidence 44567777777 44443344322 7788888887776533 1 22 7777888888888877776654 777
Q ss_pred cCCCcEEeccCCCCcccCh--------------------hhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 300 LLLLKYLVLNIPSLKHLPS--------------------SLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
+++|++|++++|.+..+|. .++++++|++|++++|.+..++. +..+++|++|++++|.+
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQI 211 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCC
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcc
Confidence 7778888777777665542 24556666666666666665543 66677777777777766
Q ss_pred CCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.+..| ++.+++|++|++.++.-.....+..+++|+.|++++|. ... .+. +..+++|+.|+++++. +
T Consensus 212 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~-~~~-~~~l~~L~~L~l~~n~--------l 277 (466)
T 1o6v_A 212 SDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISN-LAP-LSGLTKLTELKLGANQ--------I 277 (466)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCC-CGG-GTTCTTCSEEECCSSC--------C
T ss_pred ccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--ccc-chh-hhcCCCCCEEECCCCc--------c
Confidence 54333 55677777777777662122456667777777777774 222 222 6677778888877754 5
Q ss_pred -cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcc
Q 035853 440 -VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMEND 518 (581)
Q Consensus 440 -~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 518 (581)
.+|.+..+++|++|++++|.+.+. +.++.+++|+.|++++|.+.+... ...+++|+.|++++| .+..++ .+.
T Consensus 278 ~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~ 350 (466)
T 1o6v_A 278 SNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLA 350 (466)
T ss_dssp CCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGT
T ss_pred CccccccCCCccCeEEcCCCcccCc--hhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC-ccCCch-hhc
Confidence 444467889999999999987653 348899999999999998876542 568999999999998 566664 578
Q ss_pred cccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 519 AMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 519 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.+++|+.|++++|+.....| +..+++|++|++++|+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 89999999999998554444 8899999999999986
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=6e-26 Score=239.26 Aligned_cols=304 Identities=13% Similarity=0.091 Sum_probs=237.9
Q ss_pred cccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cC-CCcccCcCCCcEEeccCCCCccc
Q 035853 239 SWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EY-PAGINPLLLLKYLVLNIPSLKHL 316 (581)
Q Consensus 239 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~l-p~~i~~l~~Lr~L~L~~~~i~~l 316 (581)
++. ..+++++|.+.++.... .. +..|.++++|++|++++|.+. .+ |..+..+++|++|++++|.+..+
T Consensus 25 lp~-l~~~l~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 25 VPE-LPAHVNYVDLSLNSIAE------LN---ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94 (455)
T ss_dssp CCC-CCTTCCEEECCSSCCCE------EC---TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred CCC-CCCccCEEEecCCccCc------CC---hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc
Confidence 444 46899999999987753 33 577899999999999999986 44 56799999999999999999855
Q ss_pred -ChhhhcccCCcEEEecCCcccc-cchh--hhcCCCCcEeecCCcccCCCCCCc-cCCCCCCcEeceecCC--Ccchhhh
Q 035853 317 -PSSLCNLLSLHTLDMRWSYIHH-TPDE--IWKMNELRHLNFGSITLPAHPGKC-CSSLENLNFISVLHPS--SCTQDIL 389 (581)
Q Consensus 317 -p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~--~~~~~~l 389 (581)
|..++++++|++|++++|.+.. +|.. +..+++|++|++++|.+.+..|.. ++++++|++|++.++. ...+..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 7889999999999999998865 4544 889999999999999998776765 8899999999999988 4444555
Q ss_pred CCC--CCCCeEEEeeecccchhch--------hhhcCCCCCCCEEEeecCCc---c-----------cCCcccc------
Q 035853 390 GRL--PSLQTFRVHENLSSYQSML--------SNNLCPLLHLESLKLVDERT---I-----------ALQPSSI------ 439 (581)
Q Consensus 390 ~~l--~~L~~L~l~~~~~~~~~~l--------~~~l~~~~~L~~L~l~~~~~---i-----------~L~~l~l------ 439 (581)
..+ .+|+.|+++++. ..... ...+..+++|+.|+++++.- + .++.+.+
T Consensus 175 ~~l~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 252 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252 (455)
T ss_dssp GGGTTCEEEEEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTT
T ss_pred hccccccccccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccc
Confidence 544 678899998885 22211 12344668899999998531 0 1111110
Q ss_pred -------cCC-----CCC--CCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 440 -------VLP-----EYQ--FPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 440 -------~lp-----~~~--~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
.++ .+. ..++|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLS 331 (455)
T ss_dssp SCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECC
T ss_pred ccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECC
Confidence 011 111 2368999999999988777888999999999999988876543 5567889999999999
Q ss_pred CCCccccc-ccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 506 SMFWLEEW-TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 506 ~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|. +..+ +..++.+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 332 ~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 332 QNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp SSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 984 5555 6678899999999999998655568889999999999999986
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=245.97 Aligned_cols=310 Identities=20% Similarity=0.152 Sum_probs=212.2
Q ss_pred CCCCeeEEEEEecccCC-Cccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCc
Q 035853 221 SLEDFKRISVCRTVTNF-DSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAG 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~-~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~ 296 (581)
.+..++++.+. .+... ..+..+ +++|++|.+.++.... ... +..|.++++|++|+|++|.+.. .|..
T Consensus 22 lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TID---KEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EEC---TTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCcc-----ccC---HHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 66788999998 54443 334455 8899999998884422 232 4678899999999999999884 4788
Q ss_pred ccCcCCCcEEeccCCCCcc-cChh--hhcccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCCCccCCC-
Q 035853 297 INPLLLLKYLVLNIPSLKH-LPSS--LCNLLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPGKCCSSL- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l- 370 (581)
++++++|++|++++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+.+..+..++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 9999999999999998874 5655 889999999999999776653 568899999999999998877777777666
Q ss_pred -CCCcEeceecCC--CcchhhhCCCCC------CCeEEEeeecccchhchhhh---------------------------
Q 035853 371 -ENLNFISVLHPS--SCTQDILGRLPS------LQTFRVHENLSSYQSMLSNN--------------------------- 414 (581)
Q Consensus 371 -~~L~~L~l~~~~--~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~--------------------------- 414 (581)
++|+.|++..+. ...+..++.+.+ |+.|+++++. .....+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 778888877776 334444444444 7788887774 11111111
Q ss_pred ---------cCC--CCCCCEEEeecCCcccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 415 ---------LCP--LLHLESLKLVDERTIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 415 ---------l~~--~~~L~~L~l~~~~~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
+.. .++|+.|+++++. + .+ | .+..+++|+.|++++|.+.+..+..++.+++|++|+++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGF--------VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCC--------CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccCCCChhhhhccccCCccEEECCCCc--------ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 111 1456666665533 4 33 3 56777777777777777766556667777777777777
Q ss_pred cCcccCceeeeCCCCCCCCcEEEecCCCccccccc-CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 481 KNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|.+.+.. +..+..+++|+.|++++| .+..++. .+..+++|+.|++++|. +..++. +++|+.|.+++|.
T Consensus 323 ~N~l~~~~-~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 323 YNLLGELY-SSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp SCCCSCCC-SCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred CCCCCccC-HHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 77664432 445667777777777776 3554443 46667777777777775 333332 5556666665554
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=7.3e-26 Score=226.11 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=137.7
Q ss_pred CceeEEEecCcccc---cCCCcccCcCCCcEEeccC-CCCc-ccChhhhcccCCcEEEecCCccc-ccchhhhcCCCCcE
Q 035853 278 KFLRLLDLGTIVLD---EYPAGINPLLLLKYLVLNI-PSLK-HLPSSLCNLLSLHTLDMRWSYIH-HTPDEIWKMNELRH 351 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~l~-~lp~~i~~l~~L~~ 351 (581)
.+++.|+++++.+. .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 34556666666554 3555566666666666663 5544 55556666666666666666554 55555666666666
Q ss_pred eecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCC-CCCeEEEeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 352 LNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLP-SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 352 L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
|++++|.+.+.+|..++.+++|++|++.++. ...+..++.++ +|+.|+++++. .....|..+..++ |+.|++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCC-CSEEECCS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCCc-ccEEECcC
Confidence 6666666655555555556666666655555 24555555555 56666666654 3334444454444 55555554
Q ss_pred CCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 429 ERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 429 ~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
+. + ..| .+..+++|++|++++|.+++.. +.+..+++|++|++++|.+.+.. +..+..+++|+.|+++
T Consensus 207 N~--------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 207 NM--------LEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVS 276 (313)
T ss_dssp SE--------EEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECC
T ss_pred Cc--------ccCcCCHHHhcCCCCCEEECCCCceeeec-CcccccCCCCEEECcCCcccCcC-ChHHhcCcCCCEEECc
Confidence 33 3 233 4555566666666666554332 23555666666666666554332 3345556666666666
Q ss_pred CCCcccccccCcccccccceEeeccCcCCCCC
Q 035853 506 SMFWLEEWTMENDAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 506 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 537 (581)
+|.....+|.. +.+++|+.|++.+|+.+...
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 66433344543 56666666666666655443
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.3e-25 Score=239.60 Aligned_cols=322 Identities=16% Similarity=0.122 Sum_probs=220.8
Q ss_pred CCCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-C
Q 035853 220 RSLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-A 295 (581)
Q Consensus 220 ~~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~ 295 (581)
..+..++++.+. +.....+ +..+ +++|++|.+.++.... .. +..|.++++|++|++++|.++.+| .
T Consensus 25 ~l~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------i~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (570)
T 2z63_A 25 NLPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IE---DGAYQSLSHLSTLILTGNPIQSLALG 94 (570)
T ss_dssp SSCSSCCEEECC-SCCCCEECTTTTTTCSSCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccccEEEcc-CCccCccChhHhhCCCCceEEECCCCcCCc------cC---cccccCchhCCEEeCcCCcCCccCHh
Confidence 356789999998 5544433 3344 8999999999987643 33 567899999999999999998655 7
Q ss_pred cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCccCCCCC
Q 035853 296 GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCCSSLEN 372 (581)
Q Consensus 296 ~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~ 372 (581)
.++.+++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.+....|..++.+++
T Consensus 95 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT
T ss_pred hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc
Confidence 79999999999999999998875 69999999999999998765 7899999999999999998775433333332222
Q ss_pred --------------------------------------------------------------------------------
Q 035853 373 -------------------------------------------------------------------------------- 372 (581)
Q Consensus 373 -------------------------------------------------------------------------------- 372 (581)
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred cchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence
Q ss_pred -----------------------------CcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhh--------
Q 035853 373 -----------------------------LNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNN-------- 414 (581)
Q Consensus 373 -----------------------------L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-------- 414 (581)
|+.|++.++. ..++..+..+ +|+.|++++|. . ..+|..
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~--~-~~l~~~~l~~L~~L 330 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCK--F-GQFPTLKLKSLKRL 330 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCB--C-SSCCBCBCSSCCEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCc--c-cccCcccccccCEE
Confidence 2222222222 2222222222 33333333332 0 111110
Q ss_pred ------------cCCCCCCCEEEeecCCc---------c----cCCccc-----c-cCC-CCCCCCCccEEEEeeccCCC
Q 035853 415 ------------LCPLLHLESLKLVDERT---------I----ALQPSS-----I-VLP-EYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 415 ------------l~~~~~L~~L~l~~~~~---------i----~L~~l~-----l-~lp-~~~~l~~L~~L~L~~~~l~~ 462 (581)
...+++|+.|+++++.- + .|+.+. + .+| .+..+++|++|++++|.+.+
T Consensus 331 ~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp EEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred eCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccc
Confidence 03456677777765320 0 222221 2 334 45567777777777776655
Q ss_pred CCc-ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc-cccccCcccccccceEeeccCcCCCCCccc
Q 035853 463 DPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL-EEWTMENDAMPKLESLIINPCAYLKILPEE 540 (581)
Q Consensus 463 ~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~ 540 (581)
..+ ..+..+++|++|++++|.+.+.. +..+.++++|+.|++++|... ..+|..+..+++|+.|++++|......|..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 433 45677888888888877665433 445677888999999888533 357778888999999999998765555778
Q ss_pred ccCCCCccEEEeeCCC
Q 035853 541 LWRIKSLTKLELWWPR 556 (581)
Q Consensus 541 l~~l~~L~~L~l~~c~ 556 (581)
+..+++|++|++++|.
T Consensus 490 ~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEeCCCCc
Confidence 8889999999999885
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=9.5e-25 Score=247.22 Aligned_cols=306 Identities=18% Similarity=0.150 Sum_probs=241.0
Q ss_pred CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccc-ccC-CCcccCcCCCcEEeccCCCCc
Q 035853 237 FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVL-DEY-PAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 237 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l-~~l-p~~i~~l~~Lr~L~L~~~~i~ 314 (581)
..+|. ..++++.|.+.++.... .. +..|.++++|++|++++|.. ..+ |..++++++|++|+|++|.+.
T Consensus 17 ~~vP~-lp~~l~~LdLs~N~i~~------i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 17 TQVPQ-VLNTTERLLLSFNYIRT------VT---ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp SCCCS-SCTTCCEEEEESCCCCE------EC---SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred CCCCC-CCCCcCEEECCCCcCCc------cC---hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 33555 67899999999988753 23 57789999999999999964 455 778999999999999999999
Q ss_pred cc-ChhhhcccCCcEEEecCCcccc-cchh--hhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--Ccchh
Q 035853 315 HL-PSSLCNLLSLHTLDMRWSYIHH-TPDE--IWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQD 387 (581)
Q Consensus 315 ~l-p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~ 387 (581)
.+ |..++++++|++|++++|.+.. +|.. ++++++|++|++++|.+.+..+ ..++++++|++|++.++. ...+.
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 55 8899999999999999998765 5655 8899999999999999976544 578999999999999987 44555
Q ss_pred hhCCC--CCCCeEEEeeecccchhchhhhcCCCCC------CCEEEeecCC---cc------c-----CCccc-------
Q 035853 388 ILGRL--PSLQTFRVHENLSSYQSMLSNNLCPLLH------LESLKLVDER---TI------A-----LQPSS------- 438 (581)
Q Consensus 388 ~l~~l--~~L~~L~l~~~~~~~~~~l~~~l~~~~~------L~~L~l~~~~---~i------~-----L~~l~------- 438 (581)
.++.+ ++|+.|+++++. .....+..+..+.+ |+.|+++++. .+ . +..+.
T Consensus 167 ~l~~l~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 167 ELEPLQGKTLSFFSLAANS--LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGHHHHHCSSCCCEECCSB--SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HcccccCCccceEECCCCc--cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 66655 899999999997 55555655555554 9999998752 11 0 00000
Q ss_pred -------c-cCC--CCCC--CCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecC
Q 035853 439 -------I-VLP--EYQF--PPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKS 506 (581)
Q Consensus 439 -------l-~lp--~~~~--l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 506 (581)
+ ... .+.. .++|+.|++++|.+....+..++.+++|+.|++++|.+.+.. +..+.++++|+.|++++
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEES
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCC
Confidence 0 001 1222 378999999999987777788999999999999988876543 55678899999999999
Q ss_pred CCccccc-ccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 507 MFWLEEW-TMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 507 ~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|. +..+ +..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 324 N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 324 NL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CC-CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred CC-CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 85 5544 7788999999999999997433334568899999999999997
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.1e-24 Score=235.14 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=190.7
Q ss_pred CCCCeeEEEEEecccCCCc-cccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCc-
Q 035853 221 SLEDFKRISVCRTVTNFDS-WEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAG- 296 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~-~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~- 296 (581)
....++++.+. +...... +..+ +++|++|.+.++.... .. +..|..+++|++|++++|.++.+|..
T Consensus 24 ~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 93 (549)
T 2z81_A 24 LTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINT------IE---GDAFYSLGSLEHLDLSDNHLSSLSSSW 93 (549)
T ss_dssp CCTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred CCCCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCc------cC---hhhccccccCCEEECCCCccCccCHHH
Confidence 34567777777 4333322 3334 6777777777765532 22 35566677777777777776655543
Q ss_pred ccCcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCc-ccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCC--
Q 035853 297 INPLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSY-IHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSL-- 370 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l-- 370 (581)
++++++|++|++++|.++. .|..++++++|++|++++|. +..+| ..+..+++|++|++++|.+.+..|..++.+
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 6667777777777776663 34566667777777776664 55555 345566666666666665554444444332
Q ss_pred ----------------------CCCcEeceecCC----------------------------------------------
Q 035853 371 ----------------------ENLNFISVLHPS---------------------------------------------- 382 (581)
Q Consensus 371 ----------------------~~L~~L~l~~~~---------------------------------------------- 382 (581)
++|+.|++.++.
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 233333332222
Q ss_pred ---------------------------------------------------------------------Ccchhhh-CCC
Q 035853 383 ---------------------------------------------------------------------SCTQDIL-GRL 392 (581)
Q Consensus 383 ---------------------------------------------------------------------~~~~~~l-~~l 392 (581)
..++..+ +.+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 1111122 246
Q ss_pred CCCCeEEEeeecccchhchh---hhcCCCCCCCEEEeecCCc---------c----cCC-----cccc-cCC-CCCCCCC
Q 035853 393 PSLQTFRVHENLSSYQSMLS---NNLCPLLHLESLKLVDERT---------I----ALQ-----PSSI-VLP-EYQFPPR 449 (581)
Q Consensus 393 ~~L~~L~l~~~~~~~~~~l~---~~l~~~~~L~~L~l~~~~~---------i----~L~-----~l~l-~lp-~~~~l~~ 449 (581)
++|+.|+++++. ..+..| ..+..+++|+.|+++++.- + .|+ ...+ .+| .+..+++
T Consensus 334 ~~L~~L~Ls~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENL--MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSC--CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred ccccEEEccCCc--cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence 677777777775 444443 3367778888888887430 1 111 1113 455 5555666
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeec
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN 529 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 529 (581)
|++|++++|.++.. +..+ .++|++|++++|.+.+. ...+++|++|++++| .++.+|. ...+++|+.|+++
T Consensus 412 L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 412 MRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp CCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECC
T ss_pred ccEEECCCCCcccc-cchh--cCCceEEECCCCChhhh-----cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecC
Confidence 66666666654321 1111 24666666666655442 257899999999998 6778887 5679999999999
Q ss_pred cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 530 PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 530 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|......|..+..+++|+.|++++||
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCC
Confidence 997555555678999999999999887
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=4.3e-24 Score=224.25 Aligned_cols=291 Identities=16% Similarity=0.096 Sum_probs=211.3
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
..+++++.+. +.....++ .+ +++|+.|.+.++.... .+ +..+++|++|++++|.++.+| +++
T Consensus 41 l~~L~~L~Ls-~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-----------~~-~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 41 LATLTSLDCH-NSSITDMT-GIEKLTGLTKLICTSNNITT-----------LD-LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp HTTCCEEECC-SSCCCCCT-TGGGCTTCSEEECCSSCCSC-----------CC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred cCCCCEEEcc-CCCcccCh-hhcccCCCCEEEccCCcCCe-----------Ec-cccCCCCCEEECcCCCCceee--cCC
Confidence 3567777777 44444344 34 7888888888877643 12 677888888888888887764 778
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
+++|++|++++|.++.+| ++++++|++|++++|.+..+| ++.+++|++|++++|...+.+ .++.+++|+.|++.
T Consensus 105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 888888888888888776 778888888888888877775 777888888888888655454 46788888888888
Q ss_pred cCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEee
Q 035853 380 HPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSN 457 (581)
Q Consensus 380 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~ 457 (581)
++. ..++ ++.+++|+.|+++++. ... + .+..+++|+.|+++++. + .+| ++.+++|++|++++
T Consensus 179 ~n~l~~l~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~N~--------l~~ip-~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 179 FNKITELD--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSSNK--------LTEID-VTPLTQLTYFDCSV 242 (457)
T ss_dssp SSCCCCCC--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCSSC--------CSCCC-CTTCTTCSEEECCS
T ss_pred CCccceec--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcCCc--------ccccC-ccccCCCCEEEeeC
Confidence 887 4443 7788888888888885 222 2 37778888888888865 6 667 66788999999999
Q ss_pred ccCCCCCcccccCCC-------CCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC--------cccccc
Q 035853 458 TELKYDPMPALEKLP-------HLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME--------NDAMPK 522 (581)
Q Consensus 458 ~~l~~~~~~~l~~l~-------~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--------~~~l~~ 522 (581)
|.+++..+..+.++. +|+.|++++|...+.. + .+.+++|+.|++++|..++.+|.. +..+++
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~-~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF-Q--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE-E--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcc-c--ccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 988765433333322 3344444444444333 2 467899999999999877776642 456688
Q ss_pred cceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 523 LESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 523 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|+.|++++|. +..+| +.++++|+.|++++|.
T Consensus 320 L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 320 LVYLYLNNTE-LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCEEECTTCC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred CCEEECCCCc-ccccc--cccCCcCcEEECCCCC
Confidence 8888888876 44564 7889999999999886
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=1.2e-24 Score=224.41 Aligned_cols=269 Identities=16% Similarity=0.157 Sum_probs=219.7
Q ss_pred cCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEe
Q 035853 276 WFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHL 352 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L 352 (581)
.++++++|+++++.++.+|.. +..+++|++|++++|.+..+|. .++.+++|++|++++|.+..+|. .++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999988876 6789999999999999997764 89999999999999999988865 47899999999
Q ss_pred ecCCcccCCCCCCc-cCCCCCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 353 NFGSITLPAHPGKC-CSSLENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 353 ~l~~~~~~~~~p~~-i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
++++|.+. .+|.. ++++++|++|++.++. . ..+..++.+++|+.|+++++. .... .+..+++|+.|+++++
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBC---CGGGCTTCSEEECCSS
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCcc---ccccccccceeecccc
Confidence 99999988 55655 6899999999999998 3 345568899999999999986 2222 2445677777777763
Q ss_pred C--cc----cCCccc-----c-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCC
Q 035853 430 R--TI----ALQPSS-----I-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFP 497 (581)
Q Consensus 430 ~--~i----~L~~l~-----l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 497 (581)
. .+ .|+.+. + .+| ...+++|+.|++++|.+++ .+.++.+++|++|++++|.+.+.. +..+..++
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~ 272 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQ 272 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEE-CCCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCS
T ss_pred cccccCCCCcceEEECCCCeeeecc-ccccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCcC-hhHccccc
Confidence 2 00 222211 3 333 1235789999999998765 368899999999999998876543 55678899
Q ss_pred CCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 498 SLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 498 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|+.|++++| .+..++.....+|+|+.|++++|. +..+|..+..+++|++|++++|+
T Consensus 273 ~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 273 RLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred cCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 9999999998 688888888899999999999996 66889888899999999999998
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=1.3e-24 Score=240.86 Aligned_cols=274 Identities=17% Similarity=0.139 Sum_probs=119.8
Q ss_pred HHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccccc-chhhhcCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNE 348 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~ 348 (581)
..|.++++|++|++++|.++.+|. .++++++|++|++++|.+..+| ..++++++|++|++++|.+... |..++++++
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 344444445555554444444443 2444444555555444444333 2344444455555544433332 223344444
Q ss_pred CcEeecCCcccCCCCCCcc--CCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecc--cchhchhhhcCCCCCCC
Q 035853 349 LRHLNFGSITLPAHPGKCC--SSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLS--SYQSMLSNNLCPLLHLE 422 (581)
Q Consensus 349 L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~--~~~~~l~~~l~~~~~L~ 422 (581)
|++|++++|.+.+..+..+ ..+++|+.|++.++. ...+..+..+++|+.|.+.++.- .....++..+ ..++|+
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~ 225 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIR 225 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCC
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhcccc
Confidence 5555444444433222222 123444444444443 22222233333333333332220 0000011111 123455
Q ss_pred EEEeecCCcccCCcccc--cCC-CCCCCC--CccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCC
Q 035853 423 SLKLVDERTIALQPSSI--VLP-EYQFPP--RLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFP 497 (581)
Q Consensus 423 ~L~l~~~~~i~L~~l~l--~lp-~~~~l~--~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 497 (581)
.|+++++. + ..| ++..++ +|++|++++|.+.+..+..++.+++|++|++++|.+.+.. +..+.+++
T Consensus 226 ~L~L~~n~--------l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~ 296 (680)
T 1ziw_A 226 NLSLSNSQ--------LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLF 296 (680)
T ss_dssp EEECTTSC--------CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCT
T ss_pred EEEccCCc--------ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCC
Confidence 55555432 3 223 444443 3666666666555444455566666666666655544322 33445555
Q ss_pred CCcEEEecCCCccc-----cccc----CcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 498 SLKVMHLKSMFWLE-----EWTM----ENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 498 ~L~~L~l~~~~~l~-----~l~~----~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
+|+.|+++++..-. .+|. .+..+++|+.|++++|......|..+..+++|++|++++|
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 66666655432111 1221 3445555566666555543333344555555555555554
No 36
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=1.3e-25 Score=265.80 Aligned_cols=185 Identities=17% Similarity=0.237 Sum_probs=150.5
Q ss_pred hHHHHHHHHHhcCc--eEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC---------------------hHHHHH
Q 035853 2 EQRKTALHDYLRNK--RYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC---------------------SDEIFS 58 (581)
Q Consensus 2 ~~l~~~l~~~L~~k--r~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~---------------------~~~~~~ 58 (581)
+++++.+++.|.+| |+||||||||+.++|+.+ ++|||||||||+ .+|||+
T Consensus 221 ~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~ 293 (1249)
T 3sfz_A 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLE 293 (1249)
T ss_dssp HHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHH
Confidence 46778888888877 999999999999887653 679999999997 189999
Q ss_pred hc-ccccCccccCCC-CChh-hHHhhcCCcchhhhhhccc--c---ceecc----c-cccc---------cc--ccceec
Q 035853 59 LC-RLENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN--S---LVENM----R-LTWR---------IQ--KWPLLF 114 (581)
Q Consensus 59 Lf-~~f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~--t---~~~~~----~-~~~~---------~~--~~~L~~ 114 (581)
|| +..+. ..++ ++++ +|+++|+|+||||+++|+. + -|+.. + ..|. .+ ..++++
T Consensus 294 l~~~~~~~---~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1249)
T 3sfz_A 294 ILSLFVNM---KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (1249)
T ss_dssp HHHHHHTS---CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHH
T ss_pred HHHHhhCC---ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 99 66321 2334 7889 9999999999999999998 1 11100 0 0110 01 678999
Q ss_pred cccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChH
Q 035853 115 SIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFI 194 (581)
Q Consensus 115 sY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdl 194 (581)
||+.||+++|+||+|||+||+++.|+++.++.+|.++ ++.++.++++|+++||++... +|+..+|+|||+
T Consensus 371 s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l 440 (1249)
T 3sfz_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDL 440 (1249)
T ss_dssp HHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHH
T ss_pred HHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHH
Confidence 9999999999999999999999999999999999765 567899999999999999765 344567999999
Q ss_pred HHHHHHHhcccc
Q 035853 195 TRGMLVLVAEFV 206 (581)
Q Consensus 195 i~dl~~~i~~~e 206 (581)
+|++++..+.++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHhhhhHH
Confidence 999999998765
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.5e-24 Score=234.26 Aligned_cols=304 Identities=17% Similarity=0.153 Sum_probs=216.2
Q ss_pred CcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCccc
Q 035853 238 DSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHL 316 (581)
Q Consensus 238 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l 316 (581)
.++..+.+++++|.+.++.... .. +..|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..+
T Consensus 19 ~ip~~~~~~L~~L~Ls~n~l~~------~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 19 SIPSGLTAAMKSLDLSFNKITY------IG---HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp SCCSCCCTTCCEEECCSSCCCE------EC---SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred cccccCCCCccEEECcCCccCc------cC---hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 3555557899999999988643 22 467899999999999999998554 6799999999999999999988
Q ss_pred Chh-hhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--CcchhhhC
Q 035853 317 PSS-LCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQDILG 390 (581)
Q Consensus 317 p~~-i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~ 390 (581)
|.. ++++++|++|++++|.+.. .|..++++++|++|++++|...+.+| ..++++++|++|++.++. ...+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 865 9999999999999998874 46778999999999999998555665 579999999999999988 44667777
Q ss_pred CCCCCCeEEEeeecccchhchhhh-cCCCCCCCEEEeecCC--c-------c-----cC---------------------
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNN-LCPLLHLESLKLVDER--T-------I-----AL--------------------- 434 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~--~-------i-----~L--------------------- 434 (581)
.+++|+.|+++++. . ..++.. +..+++|+.|+++++. . + .|
T Consensus 170 ~l~~L~~L~l~~n~--~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 246 (549)
T 2z81_A 170 SIRDIHHLTLHLSE--S-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246 (549)
T ss_dssp TCSEEEEEEEECSB--S-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG
T ss_pred ccccCceEecccCc--c-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH
Confidence 77777777777664 1 222222 2234555555555421 0 0 00
Q ss_pred -------Cc------------------------------ccc---cCC-C---------CCCCCCccEEEEeeccCCCCC
Q 035853 435 -------QP------------------------------SSI---VLP-E---------YQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 435 -------~~------------------------------l~l---~lp-~---------~~~l~~L~~L~L~~~~l~~~~ 464 (581)
+. +.+ .+| + ....++|++|++++|.+. ..
T Consensus 247 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~i 325 (549)
T 2z81_A 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LV 325 (549)
T ss_dssp GGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred hhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cC
Confidence 00 000 001 0 011245666666666654 33
Q ss_pred cccc-cCCCCCCeEEEecCcccCcee--eeCCCCCCCCcEEEecCCCcccccc---cCcccccccceEeeccCcCCCCCc
Q 035853 465 MPAL-EKLPHLRVLKLKKNSFFGRKL--VCSSGGFPSLKVMHLKSMFWLEEWT---MENDAMPKLESLIINPCAYLKILP 538 (581)
Q Consensus 465 ~~~l-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp 538 (581)
+..+ +.+++|++|++++|.+.+..+ ....+.+++|+.|++++| .++.++ ..+..+++|+.|++++|. +..+|
T Consensus 326 p~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp 403 (549)
T 2z81_A 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP 403 (549)
T ss_dssp CHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC
T ss_pred CHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCC
Confidence 3333 568888888888887765432 223567888888888887 466554 236778888888888885 55788
Q ss_pred ccccCCCCccEEEeeCCC
Q 035853 539 EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 539 ~~l~~l~~L~~L~l~~c~ 556 (581)
..+..+++|++|++++|.
T Consensus 404 ~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SCCCCCTTCCEEECTTSC
T ss_pred hhhcccccccEEECCCCC
Confidence 877788888888888776
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=5.2e-24 Score=214.54 Aligned_cols=260 Identities=16% Similarity=0.171 Sum_probs=139.3
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
+.|++|++++|.++.++. .++++++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 456666666666664443 456666666666666666644 5556666666666666666666665443 566666666
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-C---cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCc
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-S---CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERT 431 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~ 431 (581)
+|.+....+..++++++|+.|++.++. . ..+..+..+++|+.|+++++. ...+|..+. ++|+.|+++++.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n~- 203 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---ITTIPQGLP--PSLTELHLDGNK- 203 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---CCSCCSSCC--TTCSEEECTTSC-
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---cccCCcccc--ccCCEEECCCCc-
Confidence 666554333445566666666666554 1 334445556666666666553 222333322 456666665543
Q ss_pred ccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 432 IALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 432 i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+ .+ | .+..+++|++|++++|.+.+..+..++.+++|++|++++|.+. .++..+..+++|+.|++++|
T Consensus 204 -------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N- 273 (330)
T 1xku_A 204 -------ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNN- 273 (330)
T ss_dssp -------CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSS-
T ss_pred -------CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCC-
Confidence 4 22 3 4555666666666666555444445555666666666655554 22334455566666666655
Q ss_pred cccccccC-cc------cccccceEeeccCcCCC--CCcccccCCCCccEEEeeCC
Q 035853 509 WLEEWTME-ND------AMPKLESLIINPCAYLK--ILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 509 ~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~c 555 (581)
.++.++.. +. ..+.|+.|++.+|+... ..|..+..+++|+.+++++|
T Consensus 274 ~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 34444321 11 23555666666665321 23345555566666665554
No 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.92 E-value=1.6e-25 Score=244.52 Aligned_cols=170 Identities=16% Similarity=0.153 Sum_probs=137.4
Q ss_pred HHHHHHHHHh---cCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC------------h-------------H
Q 035853 3 QRKTALHDYL---RNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC------------S-------------D 54 (581)
Q Consensus 3 ~l~~~l~~~L---~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~------------~-------------~ 54 (581)
++++.+++.| .+||+||||||||+.++|+.+. +|||||||||+ | +
T Consensus 229 eL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~e 301 (1221)
T 1vt4_I 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301 (1221)
T ss_dssp HHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHH
Confidence 4566777766 6899999999999999998762 69999999997 1 6
Q ss_pred HHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc--cce-eccccccccc-----ccceeccccCchhhh-
Q 035853 55 EIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN--SLV-ENMRLTWRIQ-----KWPLLFSIVELPQHL- 123 (581)
Q Consensus 55 ~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~--t~~-~~~~~~~~~~-----~~~L~~sY~~L~~~l- 123 (581)
|||+|| ++|+... .++. +| |+|+||||+++|+. +.. ... .|+.. ..+|++||+.||+++
T Consensus 302 EA~eLF~~~~g~~~-----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e--eW~~~~~~~I~aaLelSYd~Lp~eel 371 (1221)
T 1vt4_I 302 EVKSLLLKYLDCRP-----QDLPREV---LTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEY 371 (1221)
T ss_dssp HHHHHHHHHHCCCT-----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH--HHHHCSCHHHHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHcCCCH-----HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH--HHhcCChhHHHHHHHHHHHhCCHHHH
Confidence 999999 6665321 4556 65 99999999999998 110 001 22211 788999999999999
Q ss_pred HHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeChHHHHHHH
Q 035853 124 KLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISFITRGMLV 200 (581)
Q Consensus 124 k~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHdli~dl~~ 200 (581)
|+||+|||+||+++.|+++.++.+|+++| ++.++.++++|+++||++... ...+|+|||++++++.
T Consensus 372 K~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 99999999999999999999999999987 245889999999999999842 2257999999999764
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=1.5e-24 Score=218.58 Aligned_cols=260 Identities=17% Similarity=0.215 Sum_probs=200.2
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 356 (581)
++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67888888888888887665 588889999988887765 688889999999988888777 67788888999999988
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
|.+. .+|..+. ++|++|++.++. ...+..+..+++|+.|+++++.-......+..+..+++|+.|+++++.
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---- 182 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---- 182 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC----
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc----
Confidence 8876 5666554 688888888887 334455788889999998888621233556677788889999888865
Q ss_pred Ccccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc
Q 035853 435 QPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 435 ~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
+ .+| .+. ++|++|++++|.+++..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++| .+..
T Consensus 183 ----l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 183 ----ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp ----CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSS-CCSS
T ss_pred ----cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCC-cCcc
Confidence 6 677 443 78899999888877766777888899999999888765432 334667888999999887 5778
Q ss_pred cccCcccccccceEeeccCcCCCCCcc-ccc------CCCCccEEEeeCCC
Q 035853 513 WTMENDAMPKLESLIINPCAYLKILPE-ELW------RIKSLTKLELWWPR 556 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~lp~-~l~------~l~~L~~L~l~~c~ 556 (581)
+|..+..+++|++|++++|+ +..+|. .+. ..++|+.|++.+||
T Consensus 255 lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 88888888999999999886 444443 222 24778888998888
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=1.4e-24 Score=218.91 Aligned_cols=280 Identities=17% Similarity=0.166 Sum_probs=195.6
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCCCcEEeccCCCCccc-Chhhhcc
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLLLKYLVLNIPSLKHL-PSSLCNL 323 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L 323 (581)
+++.+.+.++.... . +..+ .++|++|++++|.++.+ |..+.++++|++|++++|.++.+ |..++++
T Consensus 34 ~l~~l~~~~~~l~~------i----p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA------V----PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCSS------C----CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCccc------c----CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 56677666655432 1 1111 35778888888887755 34677788888888888877755 5667778
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C---cchhhhCCCCCCCeEE
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S---CTQDILGRLPSLQTFR 399 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~---~~~~~l~~l~~L~~L~ 399 (581)
++|++|++++|.+..+|..+. ++|++|++++|.+....+..++.+++|+.|++.++. . ..+..+..+ +|+.|+
T Consensus 102 ~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 102 RKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp TTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 888888888887777777654 678888888887764444457778888888877776 2 344555556 778888
Q ss_pred EeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCe
Q 035853 400 VHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRV 476 (581)
Q Consensus 400 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 476 (581)
++++. ...+|..+. ++|+.|+++++. + .++ .+..+++|++|++++|.+.+..+..++.+++|+.
T Consensus 179 l~~n~---l~~l~~~~~--~~L~~L~l~~n~--------i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 179 ISEAK---LTGIPKDLP--ETLNELHLDHNK--------IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245 (332)
T ss_dssp CCSSB---CSSCCSSSC--SSCSCCBCCSSC--------CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred CcCCC---CCccCcccc--CCCCEEECCCCc--------CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence 87774 333554443 578888887755 5 444 6778888899999888887766667888899999
Q ss_pred EEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC-cc------cccccceEeeccCcCC--CCCcccccCCCCc
Q 035853 477 LKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME-ND------AMPKLESLIINPCAYL--KILPEELWRIKSL 547 (581)
Q Consensus 477 L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l--~~lp~~l~~l~~L 547 (581)
|++++|.+. .++..+..+++|+.|++++| .++.++.. +. .+++|+.|++.+|+.. ...|..+..+++|
T Consensus 246 L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 246 LHLDNNKLS--RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp EECCSSCCC--BCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred EECCCCcCe--ecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 999888776 33555677888999999887 46665432 22 2577889999998855 3456678888999
Q ss_pred cEEEeeCCC
Q 035853 548 TKLELWWPR 556 (581)
Q Consensus 548 ~~L~l~~c~ 556 (581)
+.+++++|.
T Consensus 323 ~~l~l~~n~ 331 (332)
T 2ft3_A 323 LAIQFGNYK 331 (332)
T ss_dssp TTEEC----
T ss_pred hhhhccccc
Confidence 999988875
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=7e-24 Score=222.59 Aligned_cols=268 Identities=17% Similarity=0.059 Sum_probs=219.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
++++++|.+.++.... .+.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 41 l~~L~~L~Ls~n~l~~-----------~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-----------MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HTTCCEEECCSSCCCC-----------CTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred cCCCCEEEccCCCccc-----------ChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 7899999999987643 246889999999999999999876 899999999999999999886 8899
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEe
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVH 401 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~ 401 (581)
++|++|++++|.+..+| ++.+++|++|++++|.+.+ + .++.+++|+.|++.++. ..+ .++.+++|+.|+++
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999998887 8899999999999999875 4 38899999999999985 333 57889999999999
Q ss_pred eecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEe
Q 035853 402 ENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLK 480 (581)
Q Consensus 402 ~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~ 480 (581)
++. ...++ +..+++|+.|+++++. + .++ ++.+++|++|++++|.+++ . + ++.+++|+.|+++
T Consensus 179 ~n~---l~~l~--l~~l~~L~~L~l~~N~--------l~~~~-l~~l~~L~~L~Ls~N~l~~-i-p-~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 179 FNK---ITELD--VSQNKLLNRLNCDTNN--------ITKLD-LNQNIQLTFLDCSSNKLTE-I-D-VTPLTQLTYFDCS 241 (457)
T ss_dssp SSC---CCCCC--CTTCTTCCEEECCSSC--------CSCCC-CTTCTTCSEEECCSSCCSC-C-C-CTTCTTCSEEECC
T ss_pred CCc---cceec--cccCCCCCEEECcCCc--------CCeec-cccCCCCCEEECcCCcccc-c-C-ccccCCCCEEEee
Confidence 995 33344 7889999999999865 5 444 6788999999999999876 3 2 8899999999999
Q ss_pred cCcccCceeeeCCCCCCCCcEE----------EecCCCcccccccCcccccccceEeeccCcCCCCCcc--------ccc
Q 035853 481 KNSFFGRKLVCSSGGFPSLKVM----------HLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPE--------ELW 542 (581)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~L~~L----------~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~l~ 542 (581)
+|.+.+.. .+.+++|+.| ++++|..+..+| .+.+++|+.|++++|+.++.+|. .+.
T Consensus 242 ~N~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 242 VNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp SSCCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred CCcCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 99887653 3456665554 555555455555 46789999999999988777664 245
Q ss_pred CCCCccEEEeeCCC
Q 035853 543 RIKSLTKLELWWPR 556 (581)
Q Consensus 543 ~l~~L~~L~l~~c~ 556 (581)
++++|++|++++|.
T Consensus 316 ~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 316 QNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCC
T ss_pred hcccCCEEECCCCc
Confidence 66788888887775
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.3e-25 Score=222.46 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=215.6
Q ss_pred CCCcEEeccCCCCc---ccChhhhcccCCcEEEecC-Ccc-cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 301 LLLKYLVLNIPSLK---HLPSSLCNLLSLHTLDMRW-SYI-HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~-~~l-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
.+++.|+++++.+. .+|..++++++|++|++++ +.+ ..+|..++++++|++|++++|.+.+.+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 58999999999998 6999999999999999995 655 578999999999999999999998889999999999999
Q ss_pred eceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC-CCCEEEeecCCcccCCcccc--cCC-CCCCCCC
Q 035853 376 ISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDERTIALQPSSI--VLP-EYQFPPR 449 (581)
Q Consensus 376 L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~ 449 (581)
|++.++. ...+..++.+++|+.|+++++. ....+|..+..+. +|+.|+++++. + .+| .+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~--------l~~~~~~~~~~l~- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNR--------LTGKIPPTFANLN- 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSE--------EEEECCGGGGGCC-
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCe--------eeccCChHHhCCc-
Confidence 9999998 5788889999999999999997 6668888999998 99999999855 5 567 777776
Q ss_pred ccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeec
Q 035853 450 LIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIIN 529 (581)
Q Consensus 450 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 529 (581)
|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. + .+..+++|++|++++|.....+|..+..+++|+.|+++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 999999999988888889999999999999999886554 2 26778999999999996555789889999999999999
Q ss_pred cCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 530 PCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 530 ~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+|+....+|.. ..+++|+.+++.+||
T Consensus 277 ~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 277 FNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CCcccccCCCC-ccccccChHHhcCCC
Confidence 99877788876 889999999999988
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5.3e-24 Score=231.87 Aligned_cols=270 Identities=16% Similarity=0.167 Sum_probs=219.8
Q ss_pred cCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEe
Q 035853 276 WFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHL 352 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L 352 (581)
.+.++++|+++++.+..+|.. +..+++|++|++++|.+..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 467899999999999988876 6789999999999999997764 899999999999999999888765 6899999999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+....+..++++++|++|+++++. ...+..++.+++|+.|++++|. ... + .+..+++|+.|+++++.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~-~--~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTH-V--DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSB-C--CGGGCTTCSEEECCSSC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCC-c--ChhhhhhhhhhhcccCc
Confidence 999999984444446999999999999998 4445578999999999999986 222 2 23446677777776632
Q ss_pred --cc----cCCccc-----c-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCC
Q 035853 431 --TI----ALQPSS-----I-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPS 498 (581)
Q Consensus 431 --~i----~L~~l~-----l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 498 (581)
.+ .|+.+. + .+| ....++|+.|++++|.+++ ++.++.+++|+.|++++|.+.+.. +..+..+++
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 279 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQR 279 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSS
T ss_pred cccccCCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCC-HHHhcCccC
Confidence 00 122211 3 333 1124689999999998865 478999999999999998886654 566889999
Q ss_pred CcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 499 LKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 499 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
|+.|++++| .+..+|.....+|+|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC
Confidence 999999998 688889888899999999999997 55899889999999999999997
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=4.7e-24 Score=215.03 Aligned_cols=283 Identities=16% Similarity=0.134 Sum_probs=225.9
Q ss_pred CeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccC-CCcccCcCC
Q 035853 224 DFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEY-PAGINPLLL 302 (581)
Q Consensus 224 ~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~l-p~~i~~l~~ 302 (581)
..+.+.+. +.....++..+.++++.|.+.++.... .. +..|.++++|++|++++|.++.+ |..++++++
T Consensus 34 ~l~~l~~~-~~~l~~ip~~~~~~l~~L~l~~n~i~~------~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCS-DLGLKAVPKEISPDTTLLDLQNNDISE------LR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECC-SSCCSSCCSCCCTTCCEEECCSSCCCE------EC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECC-CCCccccCCCCCCCCeEEECCCCcCCc------cC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 35566666 444444665557899999999987643 22 46789999999999999999955 778999999
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCC--CCCCccCCCCCCcEecee
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPA--HPGKCCSSLENLNFISVL 379 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~L~l~ 379 (581)
|++|++++|.++.+|..+. ++|++|++++|.+..+|.. +..+++|++|++++|.+.. ..|..++.+ +|+.|++.
T Consensus 104 L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 104 LQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 9999999999999998776 8999999999999888865 7889999999999998853 566777777 99999999
Q ss_pred cCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 380 HPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 380 ~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
++. ..++..+. ++|+.|+++++. .....+..+..+++|+.|+++++. + .++ ++..+++|++|++
T Consensus 181 ~n~l~~l~~~~~--~~L~~L~l~~n~--i~~~~~~~l~~l~~L~~L~L~~N~--------l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 181 EAKLTGIPKDLP--ETLNELHLDHNK--IQAIELEDLLRYSKLYRLGLGHNQ--------IRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp SSBCSSCCSSSC--SSCSCCBCCSSC--CCCCCTTSSTTCTTCSCCBCCSSC--------CCCCCTTGGGGCTTCCEEEC
T ss_pred CCCCCccCcccc--CCCCEEECCCCc--CCccCHHHhcCCCCCCEEECCCCc--------CCcCChhHhhCCCCCCEEEC
Confidence 988 55665554 789999999996 555556788999999999999866 6 555 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeC-----CCCCCCCcEEEecCCCcc--cccccCcccccccceEee
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCS-----SGGFPSLKVMHLKSMFWL--EEWTMENDAMPKLESLII 528 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l 528 (581)
++|.++ ..+..++.+++|+.|++++|.+........ ...+++|+.|++.+|+.. ...|..+..+++|+.|++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 999986 566779999999999999998765432111 112678999999998743 234566788999999999
Q ss_pred ccCc
Q 035853 529 NPCA 532 (581)
Q Consensus 529 ~~c~ 532 (581)
++|.
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 9886
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.91 E-value=1.2e-23 Score=233.13 Aligned_cols=293 Identities=16% Similarity=0.126 Sum_probs=208.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-cChhhh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH-LPSSLC 321 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~-lp~~i~ 321 (581)
+++|++|.+.++.... .+ ...|..+++|++|++++|.+..+| ..++++++|++|++++|.+.. .|..++
T Consensus 72 l~~L~~L~L~~n~l~~------l~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 142 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQ------LS---DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142 (680)
T ss_dssp CTTCCEEECCSSCCCC------CC---TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS
T ss_pred ccCcCEEECCCCccCc------cC---hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhc
Confidence 6666777766665432 22 356899999999999999998766 679999999999999999885 456788
Q ss_pred cccCCcEEEecCCcccccchh-h--hcCCCCcEeecCCcccCCCCCCccCCCCC--------------------------
Q 035853 322 NLLSLHTLDMRWSYIHHTPDE-I--WKMNELRHLNFGSITLPAHPGKCCSSLEN-------------------------- 372 (581)
Q Consensus 322 ~L~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~~~~~p~~i~~l~~-------------------------- 372 (581)
++++|++|++++|.+..++.. + ..+++|++|++++|.+.+..|..++.+.+
T Consensus 143 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 999999999999988887754 3 35689999999999988766666665544
Q ss_pred -CcEeceecCC--CcchhhhCCCC--CCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CC
Q 035853 373 -LNFISVLHPS--SCTQDILGRLP--SLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EY 444 (581)
Q Consensus 373 -L~~L~l~~~~--~~~~~~l~~l~--~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~ 444 (581)
|+.|++.++. ...+..+..++ +|+.|+++++. .....+..+..+++|+.|+++++. + ..| ++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~ 292 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN--LNVVGNDSFAWLPQLEYFFLEYNN--------IQHLFSHSL 292 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSCC--------BSEECTTTT
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCC--cCccCcccccCcccccEeeCCCCc--------cCccChhhh
Confidence 5555555554 22334444443 38888888775 445556677788888888888755 5 345 78
Q ss_pred CCCCCccEEEEeeccCCC-----CCcc----cccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC-------
Q 035853 445 QFPPRLIELSLSNTELKY-----DPMP----ALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF------- 508 (581)
Q Consensus 445 ~~l~~L~~L~L~~~~l~~-----~~~~----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------- 508 (581)
..+++|++|++++|...+ ..+. .++.+++|++|++++|.+.+.. +..+.++++|++|++++|.
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~ 371 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLT 371 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcc
Confidence 888999999988765332 1111 5678899999999988876543 4446677777777777652
Q ss_pred --------------------ccccc-ccCcccccccceEeeccCcCCCCCc-ccccCCCCccEEEeeCCC
Q 035853 509 --------------------WLEEW-TMENDAMPKLESLIINPCAYLKILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 509 --------------------~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
.+..+ |..+..+++|+.|++++|.....+| ..+..+++|++|++++|.
T Consensus 372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 11111 3345567777777777776554454 466777777777777775
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=6.6e-24 Score=213.21 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=178.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
.++++.|.+.++.... . +..+.++++|++|++++|.++.+|..++++++|++|++++|.++.+|..++++
T Consensus 80 ~~~l~~L~L~~n~l~~-------l---p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-------F---PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCSS-------C---CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCchh-------c---ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 4678888888877643 2 35567799999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCC-cccccchhhhc---------CCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCC
Q 035853 324 LSLHTLDMRWS-YIHHTPDEIWK---------MNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRL 392 (581)
Q Consensus 324 ~~L~~L~l~~~-~l~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l 392 (581)
++|++|++++| .+..+|..++. +++|++|++++|.+. .+|..++++++|++|++.++. ..++..++.+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 99999999998 67888887765 899999999999887 788888888899999988888 6677778888
Q ss_pred CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCCCCCccccc
Q 035853 393 PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELKYDPMPALE 469 (581)
Q Consensus 393 ~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~ 469 (581)
++|+.|++++|. ....+|..+..+++|+.|+++++. + .+| ++..+++|++|+|++|.+.+..|..++
T Consensus 229 ~~L~~L~Ls~n~--~~~~~p~~~~~l~~L~~L~L~~n~--------~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 229 PKLEELDLRGCT--ALRNYPPIFGGRAPLKRLILKDCS--------NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp TTCCEEECTTCT--TCCBCCCCTTCCCCCCEEECTTCT--------TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred CCCCEEECcCCc--chhhhHHHhcCCCCCCEEECCCCC--------chhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 888888888876 666677777777777777777644 3 566 677777777777777777777777777
Q ss_pred CCCCCCeEEEecC
Q 035853 470 KLPHLRVLKLKKN 482 (581)
Q Consensus 470 ~l~~L~~L~L~~~ 482 (581)
++++|+.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 7777777777633
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=1.2e-22 Score=223.08 Aligned_cols=326 Identities=17% Similarity=0.115 Sum_probs=223.3
Q ss_pred CCCCCCeeEEEEEecccCCCcc-ccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCC
Q 035853 219 DRSLEDFKRISVCRTVTNFDSW-EHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPA 295 (581)
Q Consensus 219 ~~~~~~~r~lsl~~~~~~~~~~-~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~ 295 (581)
...+..+++|.+. .+....++ ..+ +++|++|.+.++.... .. +..|.++++|++|+|++|+++.+|.
T Consensus 48 ~~lp~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~------i~---~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 48 DNLPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRCEIQT------IE---DGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTCCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCCCcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCCcCCC------cC---hhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3467789999998 55554444 345 8999999999987643 33 5678999999999999999997774
Q ss_pred -cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeecCCcccCCCCCCcc----
Q 035853 296 -GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNFGSITLPAHPGKCC---- 367 (581)
Q Consensus 296 -~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~i---- 367 (581)
.|.++++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|.+.+..|..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 57899999999999999998875 48999999999999997754 57788899999999999886643111110
Q ss_pred --------------------------------------------------------------------------------
Q 035853 368 -------------------------------------------------------------------------------- 367 (581)
Q Consensus 368 -------------------------------------------------------------------------------- 367 (581)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----------------------------------------------CCCCCCcEeceecCC-Cc---------------
Q 035853 368 -----------------------------------------------SSLENLNFISVLHPS-SC--------------- 384 (581)
Q Consensus 368 -----------------------------------------------~~l~~L~~L~l~~~~-~~--------------- 384 (581)
....+|+.|++..+. ..
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 001122222222221 00
Q ss_pred -----chhhhCCCCCCCeEEEeeecccchhch-----------------------hhhcCCCCCCCEEEeecCCc-----
Q 035853 385 -----TQDILGRLPSLQTFRVHENLSSYQSML-----------------------SNNLCPLLHLESLKLVDERT----- 431 (581)
Q Consensus 385 -----~~~~l~~l~~L~~L~l~~~~~~~~~~l-----------------------~~~l~~~~~L~~L~l~~~~~----- 431 (581)
.+.....+++|+.|+++.+.-...... +..+..+++|+.+++..+..
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 001112356777777776641111111 22333444555555543110
Q ss_pred ---c-cC--------Ccccc--cCC-CCCCCCCccEEEEeeccCCC-CCcccccCCCCCCeEEEecCcccCceeeeCCCC
Q 035853 432 ---I-AL--------QPSSI--VLP-EYQFPPRLIELSLSNTELKY-DPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGG 495 (581)
Q Consensus 432 ---i-~L--------~~l~l--~lp-~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 495 (581)
+ .+ ....+ ..| .+..+++|+.|++++|.... ..+..++.+++|++|+|++|.+.+.. +..+.+
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~-~~~f~~ 516 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNS 516 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTT
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC-hHHHcC
Confidence 0 11 11112 223 56678889999998886433 34567888999999999988876543 566788
Q ss_pred CCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcccccCC-CCccEEEeeCCC
Q 035853 496 FPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPEELWRI-KSLTKLELWWPR 556 (581)
Q Consensus 496 ~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 556 (581)
+++|+.|+|++| .+..++ ..+..+++|+.|++++|......|..+..+ ++|+.|++++||
T Consensus 517 l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 517 LSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 999999999998 566664 457889999999999998666667788887 689999998865
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=3.9e-23 Score=210.17 Aligned_cols=263 Identities=17% Similarity=0.201 Sum_probs=150.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~ 358 (581)
.+.+.+++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..++ ..+..+++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 345555555555555443 255555555555554443 4555555555555555554443 235555555555555555
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchh--hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQD--ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~--~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+....+..++++++|++|++.++. ..++. .+..+++|+.|+++++. ......+..+..+++|+.|+++++.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~----- 185 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASD----- 185 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETT-----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCC-----
Confidence 542222224555555555555554 33332 35555666666666552 0122223445556666666666544
Q ss_pred cccc-c-CC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeee--CCCCCCCCcEEEecCCCcc
Q 035853 436 PSSI-V-LP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVC--SSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 436 ~l~l-~-lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l 510 (581)
+ . .| .+..+++|++|++++|.+.......++.+++|+.|++++|.+.+..+.. .....+.++.+++.++. +
T Consensus 186 ---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l 261 (353)
T 2z80_A 186 ---LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-I 261 (353)
T ss_dssp ---CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-C
T ss_pred ---cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-c
Confidence 4 2 34 6667777777777777654332233445777777777777665433111 12335667777777663 3
Q ss_pred c-----ccccCcccccccceEeeccCcCCCCCcccc-cCCCCccEEEeeCCC
Q 035853 511 E-----EWTMENDAMPKLESLIINPCAYLKILPEEL-WRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~-----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 556 (581)
. .+|..+..+++|+.|++++|. +..+|..+ ..+++|++|++++|+
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCC
Confidence 2 356667788889999998886 55788764 788899999998886
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1e-22 Score=202.81 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred ceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCccc---ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHL---PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
+|++|+++++.++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 444444444444444432 34444444444444444422 33444444444444444444444444444444444444
Q ss_pred CCcccCCCCC-CccCCCCCCcEeceecCC
Q 035853 355 GSITLPAHPG-KCCSSLENLNFISVLHPS 382 (581)
Q Consensus 355 ~~~~~~~~~p-~~i~~l~~L~~L~l~~~~ 382 (581)
++|.+....+ ..+..+++|+.|++.++.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCc
Confidence 4444432221 233444444444444433
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=205.48 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=182.7
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|++|+++++.++.+|. .+.++++|++|++++|.++.++ ..++++++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 478888888888876654 6778888888888888887654 5578888888888888888777766 677888888888
Q ss_pred CCcccCCCCCC--ccCCCCCCcEeceecCC--Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 355 GSITLPAHPGK--CCSSLENLNFISVLHPS--SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 355 ~~~~~~~~~p~--~i~~l~~L~~L~l~~~~--~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
++|.+. .+|. .++.+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+..+++|+.|+++++
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD--LQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT--CCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC--cCccCHHHHhccccCCeecCCCC
Confidence 888776 4544 57788888888888774 333 4567788888888888886 55556777888888888888875
Q ss_pred CcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCccc---ccCCCCCCeEEEecCcccCce---eeeCCCCCCCCc
Q 035853 430 RTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPA---LEKLPHLRVLKLKKNSFFGRK---LVCSSGGFPSLK 500 (581)
Q Consensus 430 ~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~---l~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~ 500 (581)
. + .+| .+..+++|++|++++|.+++..+.. ....+.++.++++++.+.+.. ++..+..+++|+
T Consensus 209 ~--------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 209 Q--------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp C--------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred c--------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 5 4 455 3445788999999998877644433 334677888888877665432 233456788999
Q ss_pred EEEecCCCcccccccCc-ccccccceEeeccCcCCCCC
Q 035853 501 VMHLKSMFWLEEWTMEN-DAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 501 ~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l 537 (581)
.|++++| .++.+|... +.+++|++|++++|+.....
T Consensus 281 ~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 281 ELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 9999988 577888764 78999999999999855443
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=1e-21 Score=205.92 Aligned_cols=283 Identities=22% Similarity=0.208 Sum_probs=164.6
Q ss_pred CCCCeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+...+++.+. +.....++. ..++|+.|.+.++...... . -.++|++|++++|.++.+| .++++
T Consensus 89 ~~~~L~~L~l~-~n~l~~lp~-~~~~L~~L~l~~n~l~~l~----------~---~~~~L~~L~L~~n~l~~lp-~~~~l 152 (454)
T 1jl5_A 89 LPPHLESLVAS-CNSLTELPE-LPQSLKSLLVDNNNLKALS----------D---LPPLLEYLGVSNNQLEKLP-ELQNS 152 (454)
T ss_dssp CCTTCSEEECC-SSCCSSCCC-CCTTCCEEECCSSCCSCCC----------S---CCTTCCEEECCSSCCSSCC-CCTTC
T ss_pred CcCCCCEEEcc-CCcCCcccc-ccCCCcEEECCCCccCccc----------C---CCCCCCEEECcCCCCCCCc-ccCCC
Confidence 34567777776 444332332 2567777777766553211 1 1156777777777777766 47777
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
++|++|++++|.++.+|..+ .+|++|++++|.+..+| .++.+++|++|++++|.+.+ +|... ++|++|++.+
T Consensus 153 ~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp TTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred CCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 77777777777777666543 46777777777776676 46777777777777776653 44322 4677777766
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-CC-------------
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-EY------------- 444 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~~------------- 444 (581)
+. ..++ .++.+++|+.|+++++. ...+|.. .++|+.|+++++. + .+| +.
T Consensus 225 n~l~~lp-~~~~l~~L~~L~l~~N~---l~~l~~~---~~~L~~L~l~~N~--------l~~l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 225 NILEELP-ELQNLPFLTTIYADNNL---LKTLPDL---PPSLEALNVRDNY--------LTDLPELPQSLTFLDVSENIF 289 (454)
T ss_dssp SCCSSCC-CCTTCTTCCEEECCSSC---CSSCCSC---CTTCCEEECCSSC--------CSCCCCCCTTCCEEECCSSCC
T ss_pred CcCCccc-ccCCCCCCCEEECCCCc---CCccccc---ccccCEEECCCCc--------ccccCcccCcCCEEECcCCcc
Confidence 66 4444 36667777777777664 2223321 2556666666533 2 222 11
Q ss_pred ----CCCCCccEEEEeeccCCCCCcccccCC-CCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCccc
Q 035853 445 ----QFPPRLIELSLSNTELKYDPMPALEKL-PHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDA 519 (581)
Q Consensus 445 ----~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 519 (581)
...++|++|++++|.+++ +..+ ++|++|++++|.+.+ ++ ..+++|+.|++++| .++.+|. .
T Consensus 290 ~~l~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N-~l~~lp~---~ 355 (454)
T 1jl5_A 290 SGLSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFN-HLAEVPE---L 355 (454)
T ss_dssp SEESCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSCCCC---C
T ss_pred CcccCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCC-ccccccc---h
Confidence 011345555555554332 2233 477778877776654 12 23678888888887 5667766 4
Q ss_pred ccccceEeeccCcCCC--CCcccccCC-------------CCccEEEeeCCC
Q 035853 520 MPKLESLIINPCAYLK--ILPEELWRI-------------KSLTKLELWWPR 556 (581)
Q Consensus 520 l~~L~~L~l~~c~~l~--~lp~~l~~l-------------~~L~~L~l~~c~ 556 (581)
+++|++|++++|+... .+|.++..+ ++|+.|++++|+
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 7888888888887655 677777666 788888888876
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=6e-22 Score=207.59 Aligned_cols=239 Identities=19% Similarity=0.163 Sum_probs=117.6
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 357 (581)
.+.++..+..++.+|..+. .++++|+|++|.+..++ ..+.++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3455555555666665554 45666666666666443 45566666666666666555554 33555666666666666
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchh-hhcCCCCCCCEEEeecCCcccC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLS-NNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~i~L 434 (581)
.+....+..+..+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++ ..+..+++|+.|+++++.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~---- 196 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK--RLSYISEGAFEGLSNLRYLNLAMCN---- 196 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCSSCCEEECTTSC----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC--CcceeCcchhhcccccCeecCCCCc----
Confidence 6553333345556666666665555 2222 234555556666555543 222222 234444455555554433
Q ss_pred Ccccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 435 QPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 435 ~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+|.+..+++|++|+|++|.++...+..+.++++|+.|++++|.+.+.. +..+..+++|+.|+|++| .+..+
T Consensus 197 ----l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 197 ----LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp ----CSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTS-CCCCC
T ss_pred ----CccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCC-CCCcc
Confidence 3 3443344445555555555444433444444455555555444433221 223344444444444444 23333
Q ss_pred cc-CcccccccceEeeccCc
Q 035853 514 TM-ENDAMPKLESLIINPCA 532 (581)
Q Consensus 514 ~~-~~~~l~~L~~L~l~~c~ 532 (581)
+. .+..+++|+.|++++|+
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSC
T ss_pred ChhHhccccCCCEEEcCCCC
Confidence 32 23344444444444443
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=8.2e-22 Score=207.31 Aligned_cols=239 Identities=18% Similarity=0.151 Sum_probs=124.6
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~ 357 (581)
.+.++.++..++.+|..+. ++|++|+|++|.++.+ |..++++++|++|++++|.+..++ ..+..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 3556666666666665554 4667777777766644 455666777777777776665554 44566667777777776
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhh-hcCCCCCCCEEEeecCCcccC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSN-NLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~i~L 434 (581)
.+....+..++.+++|++|++.++. ..++ ..+..+++|+.|+++++. ....++. .+..+++|+.|+++++.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~~~~~~l~~L~~L~L~~n~---- 207 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISEGAFEGLFNLKYLNLGMCN---- 207 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECTTTTTTCTTCCEEECTTSC----
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccChhhccCCCCCCEEECCCCc----
Confidence 6654333446666666666666665 3222 245566666666666543 2222222 34444555555555433
Q ss_pred Ccccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 435 QPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 435 ~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
+ .+|.+..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+.. +..+..+++|+.|++++| .+..+
T Consensus 208 ----l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 208 ----IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp ----CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSS-CCSCC
T ss_pred ----ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCC-cCCcc
Confidence 3 3343444445555555555444444444445555555555444433221 223344444444444444 23333
Q ss_pred cc-CcccccccceEeeccCc
Q 035853 514 TM-ENDAMPKLESLIINPCA 532 (581)
Q Consensus 514 ~~-~~~~l~~L~~L~l~~c~ 532 (581)
+. .+..+++|+.|++++|+
T Consensus 282 ~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSSTTCTTCCEEECCSSC
T ss_pred ChHHhccccCCCEEEccCCC
Confidence 32 23344444444444443
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=9.1e-22 Score=195.86 Aligned_cols=240 Identities=20% Similarity=0.229 Sum_probs=160.8
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCccccc---chhhhcCCCCcEeecCC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHT---PDEIWKMNELRHLNFGS 356 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~ 356 (581)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 456667777777776554 4777777777777777654 56777777777777766544 55566677777777777
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Ccch--hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQ--DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
|.+. .+|..+..+++|++|++.++. ...+ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~--- 161 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS--- 161 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE---
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc---
Confidence 7665 456567777777777777766 3222 356677777777777775 445555666777777777777644
Q ss_pred CCcccc-c--CC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 434 LQPSSI-V--LP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 434 L~~l~l-~--lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ . +| .+..+++|++|++++|.+++..+..++.+++|++|++++|.+.+.. +..+..+++|+.|++++|..
T Consensus 162 -----l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 162 -----FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp -----EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCC
T ss_pred -----cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCC
Confidence 4 2 56 6777777777777777766655666777777777777777665433 23356677777777777754
Q ss_pred ccccccCccccc-ccceEeeccCcCC
Q 035853 510 LEEWTMENDAMP-KLESLIINPCAYL 534 (581)
Q Consensus 510 l~~l~~~~~~l~-~L~~L~l~~c~~l 534 (581)
....+..+..+| +|+.|++++|+..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCHHHHHhhhccCCEEEccCCCee
Confidence 444455566664 7777777777643
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=4.5e-22 Score=195.92 Aligned_cols=215 Identities=18% Similarity=0.166 Sum_probs=115.2
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 358 (581)
++++.++..++.+|..+ .++|++|++++|.++.+| ..++++++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555555555433 235555555555555444 3355555555555555555444 3445555555555555554
Q ss_pred -cCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 359 -LPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 359 -~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+....|..+..+++|++|++.++. ...+..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~----- 164 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNR----- 164 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCc-----
Confidence 333334455555555555555554 2223345555556666655553 222223335555556666655543
Q ss_pred cccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 436 PSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 436 ~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+ .+| ++..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+.. +..+..+++|+.|++++|+
T Consensus 165 ---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 165 ---ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred ---ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCEEeccCCC
Confidence 4 444 3556666666666666655555556666666666666666554422 2234556666666666654
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=9.2e-21 Score=204.93 Aligned_cols=214 Identities=22% Similarity=0.133 Sum_probs=102.3
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGS 356 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 356 (581)
+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+.+|++|++++|.+..+|.. +++|++|++++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 150 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence 4455555555555555444 34455555555555555544 344555555555555555542 24555555555
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
|.+. .+|. .+.+|+.|++.++. ..++ ..+++|+.|++++| .
T Consensus 151 N~l~-~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N--------------------------~----- 192 (622)
T 3g06_A 151 NQLA-SLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDN--------------------------Q----- 192 (622)
T ss_dssp SCCS-CCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS--------------------------C-----
T ss_pred CcCC-CcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCC--------------------------C-----
Confidence 5443 2332 12344444444444 2222 23344444444444 3
Q ss_pred cccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 436 PSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 436 ~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
+ .+|. .+++|+.|++++|.++. .+ ..+++|+.|++++|.+.+. + ..+++|+.|++++| .++.+|
T Consensus 193 ---l~~l~~--~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~L~~l--p---~~l~~L~~L~Ls~N-~L~~lp 257 (622)
T 3g06_A 193 ---LASLPT--LPSELYKLWAYNNRLTS-LP---ALPSGLKELIVSGNRLTSL--P---VLPSELKELMVSGN-RLTSLP 257 (622)
T ss_dssp ---CSCCCC--CCTTCCEEECCSSCCSS-CC---CCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCSCCC
T ss_pred ---CCCCCC--ccchhhEEECcCCcccc-cC---CCCCCCCEEEccCCccCcC--C---CCCCcCcEEECCCC-CCCcCC
Confidence 3 3330 12445555555554432 11 1234555555555544331 1 33455555555555 344444
Q ss_pred cCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 515 MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 515 ~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. .+++|+.|++++|. +..+|..+.++++|+.|++++|+
T Consensus 258 ~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp C---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCC
T ss_pred c---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCC
Confidence 4 44555555555553 33555555555555555555554
No 58
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.86 E-value=3.3e-22 Score=217.61 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=142.7
Q ss_pred HHHHHHHHHhcC--ceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCCC-----------h----------HHHHHh
Q 035853 3 QRKTALHDYLRN--KRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLTC-----------S----------DEIFSL 59 (581)
Q Consensus 3 ~l~~~l~~~L~~--kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr~-----------~----------~~~~~L 59 (581)
.+...+++.+.+ +|+||||||||+..+++. .++||+||||||+ | +||++|
T Consensus 222 ~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 222 EAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHH
Confidence 456777777776 799999999999876643 2679999999997 1 899999
Q ss_pred c-ccccCccccCCC-CChh-hHHhhcCCcchhhhhhccc--c---ceecccccccc----------------c--cccee
Q 035853 60 C-RLENGEMIHLDS-VPAG-PLRAKYQERPLVFLYYGRN--S---LVENMRLTWRI----------------Q--KWPLL 113 (581)
Q Consensus 60 f-~~f~~~~~~~~~-~~~~-~i~~~c~GlPLal~~~g~~--t---~~~~~~~~~~~----------------~--~~~L~ 113 (581)
| +..+. ..+. .+.+ +|+++|+|+||||+.+|+. . -|+.. ...+ . ..++.
T Consensus 295 ~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~--l~~l~~~~~~~~~~~~~~~~~~l~~~l~ 369 (591)
T 1z6t_A 295 LSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYY--LKQLQNKQFKRIRKSSSYDYEALDEAMS 369 (591)
T ss_dssp HHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHH--HHHHHSCCCCCSSCCCSSCCHHHHHHHH
T ss_pred HHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHH--HHHHHHhHHHHhhhccccchHHHHHHHH
Confidence 9 66322 1222 6778 9999999999999999998 1 12211 1100 0 56789
Q ss_pred ccccCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEEeCh
Q 035853 114 FSIVELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCYISF 193 (581)
Q Consensus 114 ~sY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~mHd 193 (581)
.||+.||++.|.||++||+||+|+.|+.+.++.+|.++ .+.++.++++|+++||++.... |....|+||+
T Consensus 370 ~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~ 439 (591)
T 1z6t_A 370 ISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHD 439 (591)
T ss_dssp HHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCH
T ss_pred HHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcH
Confidence 99999999999999999999999999999999999753 3457899999999999996552 3446899999
Q ss_pred HHHHHHHHhcc
Q 035853 194 ITRGMLVLVAE 204 (581)
Q Consensus 194 li~dl~~~i~~ 204 (581)
++|++++....
T Consensus 440 lv~~~~~~~~~ 450 (591)
T 1z6t_A 440 LQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHhhhh
Confidence 99999998843
No 59
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=5.1e-21 Score=210.06 Aligned_cols=309 Identities=18% Similarity=0.150 Sum_probs=220.5
Q ss_pred CCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcc
Q 035853 237 FDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKH 315 (581)
Q Consensus 237 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~ 315 (581)
..+|..+.++++.|.+.++.... .+ ...|.++++|++|+|++|.++.+|. .|.++++|++|+|++|+++.
T Consensus 44 ~~vP~~lp~~~~~LdLs~N~i~~------l~---~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 44 YKIPDNLPFSTKNLDLSFNPLRH------LG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp SSCCSSSCTTCCEEECTTSCCCE------EC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CccCCCCCcCCCEEEeeCCCCCC------CC---HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 34666667799999999998754 33 5689999999999999999997764 68999999999999999999
Q ss_pred cCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCC-CCCCccCCCCCCcEeceecCC-Ccc-hhhhC
Q 035853 316 LPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPA-HPGKCCSSLENLNFISVLHPS-SCT-QDILG 390 (581)
Q Consensus 316 lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~ 390 (581)
+|. .++++++|++|++++|.+..+|.. ++++++|++|++++|.+.. ..|..++.+++|++|++.++. ..+ +..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 885 579999999999999999999864 7899999999999999864 567788999999999998875 111 11110
Q ss_pred ---C------------------------CCCCCeEEEeeeccc-------------------------------------
Q 035853 391 ---R------------------------LPSLQTFRVHENLSS------------------------------------- 406 (581)
Q Consensus 391 ---~------------------------l~~L~~L~l~~~~~~------------------------------------- 406 (581)
. ...++.+.+.++...
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 0 000111111111000
Q ss_pred -----------------------------------------------------------------chhc-----------
Q 035853 407 -----------------------------------------------------------------YQSM----------- 410 (581)
Q Consensus 407 -----------------------------------------------------------------~~~~----------- 410 (581)
....
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 0000
Q ss_pred --------hhhhcCCCCCCCEEEeecCCc-----c--------cCCccc----------------------------c--
Q 035853 411 --------LSNNLCPLLHLESLKLVDERT-----I--------ALQPSS----------------------------I-- 439 (581)
Q Consensus 411 --------l~~~l~~~~~L~~L~l~~~~~-----i--------~L~~l~----------------------------l-- 439 (581)
.+.....+++|+.|+++.+.- . .++.+. .
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 000011234555555544210 0 111110 1
Q ss_pred cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccC
Q 035853 440 VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TME 516 (581)
Q Consensus 440 ~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~ 516 (581)
..+ .+..+++++.++++.|.+....+..+..+++|+.|++++|.......+..+..+++|+.|++++| .++.+ |..
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHH
Confidence 111 34556677777777776666666677888999999999888766666777889999999999998 56665 567
Q ss_pred cccccccceEeeccCcCCCCC-cccccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKIL-PEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~c~ 556 (581)
++.+++|+.|++++|. +..+ |..+..+++|+.|++++|.
T Consensus 514 f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp TTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSC
T ss_pred HcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCc
Confidence 8999999999999996 4555 5578899999999999986
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=2.2e-22 Score=200.81 Aligned_cols=241 Identities=17% Similarity=0.153 Sum_probs=151.1
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCccc--ccchhhh-------cCCCCcEeecCCcccCCCCCCcc-
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIH--HTPDEIW-------KMNELRHLNFGSITLPAHPGKCC- 367 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~p~~i- 367 (581)
+...+|++|++++|.+ .+|..+... |+.|+++++.+. .+|..+. .+++|++|++++|.+.+.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred ccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 3344555555555555 555544433 555555555442 2444333 45556666666655555555544
Q ss_pred -CCCCCCcEeceecCC-CcchhhhCCC-----CCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-
Q 035853 368 -SSLENLNFISVLHPS-SCTQDILGRL-----PSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI- 439 (581)
Q Consensus 368 -~~l~~L~~L~l~~~~-~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l- 439 (581)
+.+++|++|+++++. ...+..++.+ ++|+.|+++++. .....+..+..+++|+.|+++++. +
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~--------l~ 186 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH--SLNFSCEQVRVFPALSTLDLSDNP--------EL 186 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS--CCCCCTTTCCCCSSCCEEECCSCT--------TC
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC--CccchHHHhccCCCCCEEECCCCC--------cC
Confidence 555566666655555 2223333333 666666666664 444444566666666666666643 2
Q ss_pred ---cCC-C--CCCCCCccEEEEeeccCCC--CCc-ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc
Q 035853 440 ---VLP-E--YQFPPRLIELSLSNTELKY--DPM-PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 440 ---~lp-~--~~~l~~L~~L~L~~~~l~~--~~~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 510 (581)
.+| . +..+++|++|++++|.++. ..+ ..+..+++|++|++++|.+.+.........+++|+.|++++| .+
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l 265 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GL 265 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-cc
Confidence 123 2 3677888888888887653 111 234577899999999888776552234556789999999988 56
Q ss_pred cccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+.+|..+. ++|+.|++++|. +..+|. +..+++|++|++++|+
T Consensus 266 ~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 266 KQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred Chhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 78877665 889999999886 566676 8889999999999887
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=9.8e-21 Score=204.73 Aligned_cols=235 Identities=18% Similarity=0.040 Sum_probs=163.1
Q ss_pred CCCCeeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 221 SLEDFKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 221 ~~~~~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+.+++.+.+. ++....++. .+++|++|.+.++.... . +. .+++|++|++++|.++.+|. .+
T Consensus 59 l~~~L~~L~L~-~N~l~~lp~-~l~~L~~L~Ls~N~l~~------l----p~---~l~~L~~L~Ls~N~l~~l~~---~l 120 (622)
T 3g06_A 59 LPAHITTLVIP-DNNLTSLPA-LPPELRTLEVSGNQLTS------L----PV---LPPGLLELSIFSNPLTHLPA---LP 120 (622)
T ss_dssp CCTTCSEEEEC-SCCCSCCCC-CCTTCCEEEECSCCCSC------C----CC---CCTTCCEEEECSCCCCCCCC---CC
T ss_pred hCCCCcEEEec-CCCCCCCCC-cCCCCCEEEcCCCcCCc------C----CC---CCCCCCEEECcCCcCCCCCC---CC
Confidence 45789999999 655544444 48899999999988643 1 22 78999999999999998887 56
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
.+|++|++++|.++.+|.. +++|++|++++|.+..+|. .+.+|+.|++++|.+. .+| ..+++|+.|++.+
T Consensus 121 ~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~ 190 (622)
T 3g06_A 121 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-SLP---MLPSGLQELSVSD 190 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCS
T ss_pred CCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-CCc---ccCCCCcEEECCC
Confidence 8999999999999999975 5899999999999998886 3578999999999987 466 5578999999999
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeec
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNT 458 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~ 458 (581)
+. ..++. .+++|+.|++++|. ...+|. .+++|+.|+++++. + .+| ..+++|++|++++|
T Consensus 191 N~l~~l~~---~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~--------L~~lp--~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 191 NQLASLPT---LPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNR--------LTSLP--VLPSELKELMVSGN 251 (622)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSC--------CSCCC--CCCTTCCEEECCSS
T ss_pred CCCCCCCC---ccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCc--------cCcCC--CCCCcCcEEECCCC
Confidence 87 54443 24788888888874 223332 23556666666543 3 444 22345555555555
Q ss_pred cCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 459 ELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 459 ~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.++. .+. .+++|+.|++++|.+. .++..+..+++|+.|++++|+
T Consensus 252 ~L~~-lp~---~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 RLTS-LPM---LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCc-CCc---ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 5432 111 3455555555555444 123334455555555555554
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.7e-20 Score=197.32 Aligned_cols=239 Identities=19% Similarity=0.220 Sum_probs=200.0
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++.++..++.+|..+. ++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|..+.++++|++|++.+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 46788888989999998764 7999999999998877 46689999999999999999877778899999999999999
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
+. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| .+..+++|++|++
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKK-------LEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCTTCCEEEC
T ss_pred CcCCccChhhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCC-------ccccChhhccCCCCCCEEEC
Confidence 98 54444 48889999999999996 4444455788999999999997331 4 566 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCC
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l 534 (581)
++|.++. .+.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ +..+..+++|+.|++++|. +
T Consensus 204 ~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l 278 (452)
T 3zyi_A 204 GMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN-L 278 (452)
T ss_dssp TTSCCSS--CCCCTTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred CCCcccc--cccccccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc-C
Confidence 9998764 357889999999999998886543 5668899999999999985 5544 5668899999999999996 4
Q ss_pred CCCc-ccccCCCCccEEEeeCCC
Q 035853 535 KILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 535 ~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
..+| ..+..+++|+.|++++||
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 5555 457889999999999887
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-22 Score=202.13 Aligned_cols=246 Identities=16% Similarity=0.101 Sum_probs=194.9
Q ss_pred HHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
...+..+++|++|++++|.++.++ ..+..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|. .++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence 567778889999999999998655 678999999999999999986664 8899999999999998887774 4899
Q ss_pred cEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhc-CCCCCCCEEEe
Q 035853 350 RHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNL-CPLLHLESLKL 426 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~~~~L~~L~l 426 (581)
++|++++|.+.+..+ ..+++|++|++.++. ... +..++.+++|+.|+++++. .....+..+ ..+++|+.|++
T Consensus 102 ~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEEC
Confidence 999999998874333 246789999999888 333 4467788999999999986 444444544 46789999999
Q ss_pred ecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEec
Q 035853 427 VDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLK 505 (581)
Q Consensus 427 ~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 505 (581)
+++. + .+|....+++|++|++++|.++. .++.+..+++|+.|++++|.+.. ++..+..+++|+.|+++
T Consensus 177 ~~N~--------l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 177 QYNF--------IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TTSC--------CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECT
T ss_pred CCCc--------CcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEcc
Confidence 9866 6 56633458899999999998764 44558889999999999888763 45567788999999999
Q ss_pred CCCcc-cccccCcccccccceEeeccCcCCCCC
Q 035853 506 SMFWL-EEWTMENDAMPKLESLIINPCAYLKIL 537 (581)
Q Consensus 506 ~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~l 537 (581)
+|+.. ..++..+..+++|+.|++.+|+.++..
T Consensus 246 ~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 98654 366777888999999999987766543
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=4.4e-20 Score=193.55 Aligned_cols=279 Identities=23% Similarity=0.218 Sum_probs=205.6
Q ss_pred eeEEEEEecccCCCcccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCc
Q 035853 225 FKRISVCRTVTNFDSWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLK 304 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr 304 (581)
.+++.+. +.....++. ..++++.|.+.++.... . + ..+++|++|++++|.++.+|... ++|+
T Consensus 73 l~~L~l~-~~~l~~lp~-~~~~L~~L~l~~n~l~~-------l---p---~~~~~L~~L~l~~n~l~~l~~~~---~~L~ 134 (454)
T 1jl5_A 73 AHELELN-NLGLSSLPE-LPPHLESLVASCNSLTE-------L---P---ELPQSLKSLLVDNNNLKALSDLP---PLLE 134 (454)
T ss_dssp CSEEECT-TSCCSCCCS-CCTTCSEEECCSSCCSS-------C---C---CCCTTCCEEECCSSCCSCCCSCC---TTCC
T ss_pred CCEEEec-CCccccCCC-CcCCCCEEEccCCcCCc-------c---c---cccCCCcEEECCCCccCcccCCC---CCCC
Confidence 4566666 443332322 36799999998887643 1 1 23478999999999988776432 6999
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-S 383 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~ 383 (581)
+|++++|.++.+| +++++++|++|++++|.+..+|..+ .+|++|++++|.+.+ +| .++++++|+.|++.++. .
T Consensus 135 ~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 135 YLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred EEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 9999999999999 6999999999999999998888743 599999999999875 66 69999999999999988 4
Q ss_pred cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 384 CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 384 ~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
.++.. .++|+.|++++|. . ..+| .+..+++|+.|+++++. + .+|. .+++|++|++++|.+.+
T Consensus 209 ~l~~~---~~~L~~L~l~~n~--l-~~lp-~~~~l~~L~~L~l~~N~--------l~~l~~--~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 209 KLPDL---PLSLESIVAGNNI--L-EELP-ELQNLPFLTTIYADNNL--------LKTLPD--LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SCCCC---CTTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCSSC--------CSSCCS--CCTTCCEEECCSSCCSC
T ss_pred cCCCC---cCcccEEECcCCc--C-Cccc-ccCCCCCCCEEECCCCc--------CCcccc--cccccCEEECCCCcccc
Confidence 44432 2589999999995 3 3666 48899999999999865 5 5661 13678888888887654
Q ss_pred CCcccccCCCCCCeEEEecCcccCce-eee-------------CCCCC-CCCcEEEecCCCcccccccCcccccccceEe
Q 035853 463 DPMPALEKLPHLRVLKLKKNSFFGRK-LVC-------------SSGGF-PSLKVMHLKSMFWLEEWTMENDAMPKLESLI 527 (581)
Q Consensus 463 ~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~-------------~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 527 (581)
.+. .+++|+.|++++|.+.+.. .+. ....+ ++|+.|++++| .+..+|.. +++|+.|+
T Consensus 272 -l~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 272 -LPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLI 343 (454)
T ss_dssp -CCC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEE
T ss_pred -cCc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEE
Confidence 222 1356666776666554310 000 01123 47888888886 45566653 68999999
Q ss_pred eccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 528 INPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 528 l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
+++|. +..+|. .+++|++|++++|+
T Consensus 344 L~~N~-l~~lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 344 ASFNH-LAEVPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred CCCCc-cccccc---hhhhccEEECCCCC
Confidence 99986 567886 47899999999887
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=195.85 Aligned_cols=239 Identities=16% Similarity=0.214 Sum_probs=199.9
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++.++..++.+|..+. .+++.|++++|.+..++ ..+.++++|++|++++|.+....+..+.++++|++|++.+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46788889999999998775 78999999999998876 5689999999999999999866667899999999999999
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEE
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSL 455 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L 455 (581)
+. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.. + .+| .+..+++|++|++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~-------l~~i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKR-------LSYISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTT-------CCEECTTTTTTCSSCCEEEC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCC-------cceeCcchhhcccccCeecC
Confidence 98 55544 68899999999999996 5444456788999999999998331 3 555 6889999999999
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccceEeeccCcCC
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l 534 (581)
++|.++. .+.+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|. +..+ +..+..+++|+.|++++|..
T Consensus 193 ~~n~l~~--~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l- 267 (440)
T 3zyj_A 193 AMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNL- 267 (440)
T ss_dssp TTSCCSS--CCCCTTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCC-
T ss_pred CCCcCcc--ccccCCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCC-
Confidence 9998763 346889999999999999876543 5668889999999999984 5555 55688999999999999974
Q ss_pred CCCc-ccccCCCCccEEEeeCCC
Q 035853 535 KILP-EELWRIKSLTKLELWWPR 556 (581)
Q Consensus 535 ~~lp-~~l~~l~~L~~L~l~~c~ 556 (581)
..+| ..+..+++|+.|++++||
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 4555 457889999999999887
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.7e-23 Score=219.31 Aligned_cols=294 Identities=18% Similarity=0.135 Sum_probs=149.4
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCC----ceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFK----FLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK 314 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~ 314 (581)
+++|++|.+.++.... ..+ ...+..++ +|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 55 ~~~L~~L~Ls~n~l~~-----~~~---~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 55 NPALAELNLRSNELGD-----VGV---HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp CTTCCEEECTTCCCHH-----HHH---HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCcCEEeCCCCcCCh-----HHH---HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 4666666666554421 111 22233333 4666666666655 23555566666666666666654
Q ss_pred c-cChhhh-----cccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcccCCCCCCccC-----CCCCCcEece
Q 035853 315 H-LPSSLC-----NLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSITLPAHPGKCCS-----SLENLNFISV 378 (581)
Q Consensus 315 ~-lp~~i~-----~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~-----~l~~L~~L~l 378 (581)
. -+..+. ...+|++|++++|.+.. ++..+..+++|++|++++|.+....+..+. ..++|++|++
T Consensus 127 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence 1 122222 13456666666665432 344455566666666666655332222221 2446666666
Q ss_pred ecCC-C-----cchhhhCCCCCCCeEEEeeecccchhc----h-hhhcCCCCCCCEEEeecCCcccCCcccc-c-----C
Q 035853 379 LHPS-S-----CTQDILGRLPSLQTFRVHENLSSYQSM----L-SNNLCPLLHLESLKLVDERTIALQPSSI-V-----L 441 (581)
Q Consensus 379 ~~~~-~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~----l-~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~-----l 441 (581)
.+|. . .++..+..+++|+.|++++|. .... + +.....+++|+.|+++++. + . +
T Consensus 207 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~L~~n~--------l~~~~~~~l 276 (461)
T 1z7x_W 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNK--LGDVGMAELCPGLLHPSSRLRTLWIWECG--------ITAKGCGDL 276 (461)
T ss_dssp TTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSC--------CCHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHhCCCccEEeccCCc--CChHHHHHHHHHHhcCCCCceEEECcCCC--------CCHHHHHHH
Confidence 6665 1 134455556666666666664 2111 1 1222345666666666543 2 1 3
Q ss_pred C-CCCCCCCccEEEEeeccCCCCCcccccC-----CCCCCeEEEecCcccCce---eeeCCCCCCCCcEEEecCCCcccc
Q 035853 442 P-EYQFPPRLIELSLSNTELKYDPMPALEK-----LPHLRVLKLKKNSFFGRK---LVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 442 p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
| .+..+++|++|++++|.+....+..+.. .++|++|++++|.+.+.. ++..+..+++|++|++++| .+..
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~ 355 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLED 355 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-cccc
Confidence 4 4444566666666666543322222221 246666666666554332 1222334566666666666 3332
Q ss_pred c-ccCcc-----cccccceEeeccCcCCC----CCcccccCCCCccEEEeeCCC
Q 035853 513 W-TMEND-----AMPKLESLIINPCAYLK----ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 513 l-~~~~~-----~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. +..+. ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2 11111 15567777777765332 456666666777777777765
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=8.3e-21 Score=186.88 Aligned_cols=200 Identities=21% Similarity=0.251 Sum_probs=155.2
Q ss_pred CCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCc-cccc-chhhhcCCCCcEe
Q 035853 277 FKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSY-IHHT-PDEIWKMNELRHL 352 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~-l~~l-p~~i~~l~~L~~L 352 (581)
.++|++|+++++.++.++ ..+..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 457888888888887555 4577888888888888888755 5677888888888888884 7777 5567778888888
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+.+..|..+.++++|++|++.++. ...+ ..++.+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR--ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc--ccccCHHHhcCccccCEEECCCCc
Confidence 888888776666777888888888888877 4333 347788888888888885 433334457788889999988865
Q ss_pred cccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 431 TIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 431 ~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+ .+ | ++..+++|++|++++|.+++..+..++.+++|+.|++++|.+..
T Consensus 189 --------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 189 --------VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp --------CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred --------ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 6 44 6 78899999999999999887666779999999999999887643
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=4.4e-22 Score=198.68 Aligned_cols=239 Identities=18% Similarity=0.207 Sum_probs=141.1
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCc--ccChhhh-------cccCCcEEEecCCccc-ccchhh--
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLK--HLPSSLC-------NLLSLHTLDMRWSYIH-HTPDEI-- 343 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~-------~L~~L~~L~l~~~~l~-~lp~~i-- 343 (581)
..++|+.|+++++.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 344455555555555 444444432 555555555553 3444443 4555555555555443 345443
Q ss_pred hcCCCCcEeecCCcccCCCCCCccCCC-----CCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeecccchhc--hhhh
Q 035853 344 WKMNELRHLNFGSITLPAHPGKCCSSL-----ENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENLSSYQSM--LSNN 414 (581)
Q Consensus 344 ~~l~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~~~~~~~--l~~~ 414 (581)
..+++|++|++++|.+.+. |..++.+ ++|++|++.++. . ..+..++.+++|+.|+++++. .... .+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP--ELGERGLISA 194 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT--TCHHHHHHHH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC--cCcchHHHHH
Confidence 4555555555555555433 4444443 555555555555 2 222445555666666666554 2221 2333
Q ss_pred c--CCCCCCCEEEeecCCcccCCcccc-c---CC--CCCCCCCccEEEEeeccCCCCC-cccccCCCCCCeEEEecCccc
Q 035853 415 L--CPLLHLESLKLVDERTIALQPSSI-V---LP--EYQFPPRLIELSLSNTELKYDP-MPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 415 l--~~~~~L~~L~l~~~~~i~L~~l~l-~---lp--~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~ 485 (581)
+ ..+++|+.|+++++. + . +| .+..+++|++|++++|.+.+.. .+.+..+++|++|++++|.+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~--------l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAG--------METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp SCTTSCTTCCEEECTTSC--------CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred HHhccCCCCCEEECCCCc--------CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 3 556666666666543 2 2 22 1345678888888888877655 355667899999999988876
Q ss_pred CceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCC
Q 035853 486 GRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 486 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
.++.... ++|+.|++++| .++.+|. +..+++|+.|++++|+..
T Consensus 267 --~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 267 --QVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp --SCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred --hhhhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCCC
Confidence 2233332 89999999998 5777776 889999999999998743
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=7.8e-21 Score=190.04 Aligned_cols=255 Identities=13% Similarity=0.032 Sum_probs=151.6
Q ss_pred CceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
..++.++++.+.+...+ ..+..+++|++|++++|.++.++ ..++++++|++|++++|.+..++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 34677777777766333 33456779999999999999766 678999999999999998877765 8889999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
+|.+.+ ++ ..++|++|++.++. ...+. ..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~---- 155 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE---- 155 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSC----
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCC----
Confidence 998762 22 34788888887776 33332 235667777777775 333333444555555555555533
Q ss_pred Ccccc-cC-C-CC-CCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcc
Q 035853 435 QPSSI-VL-P-EY-QFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWL 510 (581)
Q Consensus 435 ~~l~l-~l-p-~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 510 (581)
+ .+ | .+ ..+++|++|++++|.++.. +....+++|++|++++|.+.+. +..+..+++|+.|++++| .+
T Consensus 156 ----l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N-~l 226 (317)
T 3o53_A 156 ----IDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KL 226 (317)
T ss_dssp ----CCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CC
T ss_pred ----CCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCC-cc
Confidence 3 22 1 22 2445555555555544321 2223355555555555544321 222344555555555554 34
Q ss_pred cccccCcccccccceEeeccCcCC-CCCcccccCCCCccEEEeeCC
Q 035853 511 EEWTMENDAMPKLESLIINPCAYL-KILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 511 ~~l~~~~~~l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~c 555 (581)
..+|..+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+|
T Consensus 227 ~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 227 VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 445554555555555555555543 334444455555555544433
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.3e-21 Score=205.21 Aligned_cols=237 Identities=16% Similarity=0.102 Sum_probs=189.4
Q ss_pred hccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEe
Q 035853 274 CKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHL 352 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 352 (581)
...+++|++|+|++|.++.++ ..++.+++|++|+|++|.+...++ ++.+++|++|++++|.+..+|. .++|++|
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence 344558999999999998554 679999999999999999986654 8899999999999998888775 4899999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcC-CCCCCCEEEeecC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLC-PLLHLESLKLVDE 429 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~~~~L~~L~l~~~ 429 (581)
++++|.+.+..+ ..+++|+.|++.++. ...+..++.+++|+.|++++|. .....|..+. .+++|+.|+++++
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTS
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCC
Confidence 999999875443 246789999999888 4445677889999999999986 5555666665 6889999999986
Q ss_pred CcccCCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 430 RTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 430 ~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
. + .+|....+++|++|+|++|.+++ .++.++.+++|+.|++++|.+.+ ++..+..+++|+.|++++|+
T Consensus 180 ~--------l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 180 F--------IYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp C--------CCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC
T ss_pred c--------cccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCC
Confidence 6 6 55634468999999999998765 44558889999999999888764 45567788999999999986
Q ss_pred cc-cccccCcccccccceEeeccC
Q 035853 509 WL-EEWTMENDAMPKLESLIINPC 531 (581)
Q Consensus 509 ~l-~~l~~~~~~l~~L~~L~l~~c 531 (581)
.. ..+|..+..++.|+.+.+..+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecccc
Confidence 44 366677788888888888633
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5.9e-23 Score=216.70 Aligned_cols=324 Identities=15% Similarity=0.048 Sum_probs=223.2
Q ss_pred CCeeEEEEEecccC-CCcccc-c--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-CCCcc
Q 035853 223 EDFKRISVCRTVTN-FDSWEH-F--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE-YPAGI 297 (581)
Q Consensus 223 ~~~r~lsl~~~~~~-~~~~~~-~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~-lp~~i 297 (581)
.+.+++.+. +... ...... + ++++++|.+.++...... + ... ...+..+++|++|++++|.+.. .+..+
T Consensus 3 ~~l~~L~Ls-~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~-~~l---~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-C-KDI---SSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEE-SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH-H-HHH---HHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhh-hcccCchhHHHHHhhcCCccEEEccCCCCCHHH-H-HHH---HHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 456777887 4433 222233 2 889999999988764310 0 123 5678888999999999998762 22222
Q ss_pred -cCcC----CCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCccccc-chhhh-----cCCCCcEeecCCcccCC
Q 035853 298 -NPLL----LLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHHT-PDEIW-----KMNELRHLNFGSITLPA 361 (581)
Q Consensus 298 -~~l~----~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~-----~l~~L~~L~l~~~~~~~ 361 (581)
..+. +|++|++++|.+. .+|..+.++++|++|++++|.+... +..+. ..++|++|++++|.+..
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2334 6999999999887 4678889999999999999976432 22222 25679999999998765
Q ss_pred C----CCCccCCCCCCcEeceecCC--CcchhhhC-----CCCCCCeEEEeeec--ccchhchhhhcCCCCCCCEEEeec
Q 035853 362 H----PGKCCSSLENLNFISVLHPS--SCTQDILG-----RLPSLQTFRVHENL--SSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 362 ~----~p~~i~~l~~L~~L~l~~~~--~~~~~~l~-----~l~~L~~L~l~~~~--~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
. ++..+..+++|++|++.++. ...+..+. ..++|+.|++++|. ......++..+..+++|+.|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 34556678899999999887 22222222 36689999999986 112224677788889999999998
Q ss_pred CCcccCCcccc-cC-C-CCCCCCCccEEEEeeccCCCC----CcccccCCCCCCeEEEecCcccCceee----eCCCCCC
Q 035853 429 ERTIALQPSSI-VL-P-EYQFPPRLIELSLSNTELKYD----PMPALEKLPHLRVLKLKKNSFFGRKLV----CSSGGFP 497 (581)
Q Consensus 429 ~~~i~L~~l~l-~l-p-~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~----~~~~~~~ 497 (581)
+. + ....+ .+ + ....+++|++|++++|.++.. .+..+..+++|++|++++|.+.+.... ......+
T Consensus 237 n~-l--~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 237 NK-L--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp SB-C--HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred Cc-C--ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 54 0 00001 12 2 345689999999999987654 355677799999999998877543211 1123447
Q ss_pred CCcEEEecCCCcccc-----cccCcccccccceEeeccCcCCCCCcc----cccC-CCCccEEEeeCCC
Q 035853 498 SLKVMHLKSMFWLEE-----WTMENDAMPKLESLIINPCAYLKILPE----ELWR-IKSLTKLELWWPR 556 (581)
Q Consensus 498 ~L~~L~l~~~~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~l~~-l~~L~~L~l~~c~ 556 (581)
+|++|++++|. +.. ++..+..+++|+.|++++|......+. .+.. .++|++|++++|.
T Consensus 314 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 314 QLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred cceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 99999999985 442 455567789999999999964332222 3332 6899999999997
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=8e-20 Score=193.40 Aligned_cols=231 Identities=13% Similarity=0.047 Sum_probs=135.3
Q ss_pred CcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 299 PLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
.+++|++|+|++|.+..+| ..++.+++|++|++++|.+...+. ++.+++|++|++++|.+.+ +| ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 4458999999999998665 688999999999999998876665 8889999999999998763 32 237888888
Q ss_pred eecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-c-CC-CCC-CCCCccE
Q 035853 378 VLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-V-LP-EYQ-FPPRLIE 452 (581)
Q Consensus 378 l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~-lp-~~~-~l~~L~~ 452 (581)
+.++. ...+. ..+++|+.|++++|. .....|..+..+++|+.|+++++. + . .| .+. .+++|++
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~--------l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE--------IDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSC--CCSGGGBCGGGGSSEEEEECTTSC--------CCEEEGGGGGGGTTTCCE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCC--CCCCCchhhcCCCCCCEEECCCCC--------CCCcChHHHhhhCCcccE
Confidence 88776 33332 235677777777775 444444455555555555555533 3 1 22 222 4455555
Q ss_pred EEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCc
Q 035853 453 LSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCA 532 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 532 (581)
|+|++|.+++. +....+++|+.|++++|.+.+. +..+..+++|+.|++++| .+..+|..+..+++|+.|++++|+
T Consensus 174 L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred EecCCCccccc--cccccCCCCCEEECCCCCCCCC--CHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 55555544322 2233355555555554444331 122344455555555554 344444444455555555555554
Q ss_pred CC-CCCcccccCCCCccEEEe
Q 035853 533 YL-KILPEELWRIKSLTKLEL 552 (581)
Q Consensus 533 ~l-~~lp~~l~~l~~L~~L~l 552 (581)
.. ..+|..+..++.|+.+.+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEec
Confidence 33 234444444444444433
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=4.3e-21 Score=209.06 Aligned_cols=323 Identities=13% Similarity=0.056 Sum_probs=174.0
Q ss_pred CCeeEEEEEecccCC-Cccccc---C-CcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-----
Q 035853 223 EDFKRISVCRTVTNF-DSWEHF---D-TYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE----- 292 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~-~~~~~~---~-~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~----- 292 (581)
...+.+.+. ..... .....+ + ++|+.|.+.++..... ... ......+++|++|+|++|.+..
T Consensus 112 ~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~----~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 112 RQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTT----DGL---LSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp TTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEH----HHH---HHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred CCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCcCH----HHH---HHHHhhCCCCCEEECccccccCcchhH
Confidence 457777777 43221 112222 2 3488888887663220 122 4555688899999999887652
Q ss_pred CCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccC-------
Q 035853 293 YPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLP------- 360 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~------- 360 (581)
++..+..+++|++|++++|.+. .++..+.++++|++|++++|.+..+|..+..+++|++|+++.+...
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 2233456788888888888775 4555567888899999988888778877888888888888643221
Q ss_pred -------------------CCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCC
Q 035853 361 -------------------AHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 361 -------------------~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
..+|..+..+++|++|++.+|. ......+..+++|+.|+++++- ....++.....+
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~--~~~~l~~~~~~~ 341 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI--GDRGLEVLAQYC 341 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHHHHHC
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc--CHHHHHHHHHhC
Confidence 1222233344455555555544 1112234555555555555332 223333333445
Q ss_pred CCCCEEEeec----------CCcc-------------cCCcccc---cCC-----CCC-CCCCccEEEEee----ccCCC
Q 035853 419 LHLESLKLVD----------ERTI-------------ALQPSSI---VLP-----EYQ-FPPRLIELSLSN----TELKY 462 (581)
Q Consensus 419 ~~L~~L~l~~----------~~~i-------------~L~~l~l---~lp-----~~~-~l~~L~~L~L~~----~~l~~ 462 (581)
++|++|+++. +..+ .|+.+.+ .+. .+. .+++|++|++++ +.+++
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 5666666662 1111 1111111 000 111 144555555542 12222
Q ss_pred C-----CcccccCCCCCCeEEEecCc--ccCceeeeCCCCCCCCcEEEecCCCccc--ccccCcccccccceEeeccCcC
Q 035853 463 D-----PMPALEKLPHLRVLKLKKNS--FFGRKLVCSSGGFPSLKVMHLKSMFWLE--EWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 463 ~-----~~~~l~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
. ....+..+++|+.|+++.|. +.+..+......+++|+.|++++|. +. .++.....+++|++|++++|+.
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCC
Confidence 1 11113345555555554322 2222222222336667777777663 33 2334446677888888888873
Q ss_pred CC-CCcccccCCCCccEEEeeCCC
Q 035853 534 LK-ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 534 l~-~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.. .++.....+++|++|++++|+
T Consensus 501 ~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 501 SERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp BHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhcCccCeeECcCCc
Confidence 21 244455567788888888877
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.9e-18 Score=168.53 Aligned_cols=195 Identities=25% Similarity=0.241 Sum_probs=124.4
Q ss_pred ceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCC
Q 035853 279 FLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGS 356 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~ 356 (581)
..+.++++++.++.+|..+. .+|++|++++|.+..+|. .++++++|++|++++|.+..+|..+ ..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46788898888888887665 588999999998887774 6888899999999988888888765 6788999999988
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
|.+....+..+..+++|+.|++.++. .. .+..++.+++|+.|+++++. .....+..+.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~------------------ 154 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSLPKGVFD------------------ 154 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTT------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCccCHhHcc------------------
Confidence 88875444556777777777777766 22 23335666666666666664 2222222234
Q ss_pred CcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCC
Q 035853 435 QPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSM 507 (581)
Q Consensus 435 ~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 507 (581)
.+++|++|++++|.++...+..+..+++|++|++++|.+.... +..+..+++|+.|++++|
T Consensus 155 -----------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 155 -----------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS
T ss_pred -----------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCC
Confidence 4444445555444444333334445555555555544443221 222344555555555554
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=1.2e-20 Score=190.34 Aligned_cols=249 Identities=18% Similarity=0.173 Sum_probs=138.3
Q ss_pred ceeEEEecCcccccCCCcccCc--CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc--cchhhhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYPAGINPL--LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH--TPDEIWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l 354 (581)
.++.++++++.+. +..+..+ +++++|+++++.+...+..+.++++|++|++++|.+.. +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 3555555555443 2233333 45555555555555444444555555555555554432 4444555555555555
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC--C--cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCC-CCCEEEeecC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS--S--CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLL-HLESLKLVDE 429 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~--~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~-~L~~L~l~~~ 429 (581)
++|.+....+..++.+++|++|++.+|. . .++..+..+++|+.|++++|.......++..+..++ +|++|+++++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5555544444445555555555555552 1 234445556666666666662011112444455555 6666666653
Q ss_pred C-cccCCcccc---cCC-CCCCCCCccEEEEeecc-CCCCCcccccCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEE
Q 035853 430 R-TIALQPSSI---VLP-EYQFPPRLIELSLSNTE-LKYDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVM 502 (581)
Q Consensus 430 ~-~i~L~~l~l---~lp-~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L 502 (581)
. . + .+| .+..+++|++|++++|. ++...+..++.+++|++|++++|. ..... ...+..+++|+.|
T Consensus 206 ~~~-------~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L 277 (336)
T 2ast_B 206 RKN-------LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTL 277 (336)
T ss_dssp GGG-------SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEE
T ss_pred ccc-------CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH-HHHHhcCCCCCEE
Confidence 2 0 1 233 34556778888888777 555667778888888888888774 22222 1235568888888
Q ss_pred EecCCCccccccc-Ccccc-cccceEeeccCcCCCCCccccc
Q 035853 503 HLKSMFWLEEWTM-ENDAM-PKLESLIINPCAYLKILPEELW 542 (581)
Q Consensus 503 ~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~lp~~l~ 542 (581)
++++| ++. .+..+ .+|+.|++++|......|..+.
T Consensus 278 ~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 278 QVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 88887 222 12233 3466677877765555665443
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=8.1e-19 Score=171.75 Aligned_cols=198 Identities=21% Similarity=0.191 Sum_probs=130.9
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l 354 (581)
++|++|+++++.++.++. .+.++++|++|++++|.+..++. .++++++|++|++++|.+..++ ..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357777777777775543 67777777777777777775553 5677777777777777766665 44667777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-C--cchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCC----EEEee
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-S--CTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLE----SLKLV 427 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~----~L~l~ 427 (581)
++|.+....+..++.+++|++|++.++. . .++..++.+++|+.|++++|. .....+..+..+.+|+ +|+++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecC
Confidence 7777765444457777777777777776 2 246667777777777777775 3333333343334444 66666
Q ss_pred cCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 428 DERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 428 ~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
++. + .+| ......+|++|++++|.++......++.+++|+.|++++|.+.
T Consensus 186 ~n~--------l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNP--------MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSC--------CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCc--------ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 644 5 555 4334457888888888776555555677788888888777653
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.78 E-value=9.4e-19 Score=171.27 Aligned_cols=216 Identities=20% Similarity=0.223 Sum_probs=137.4
Q ss_pred EEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCccc
Q 035853 282 LLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITL 359 (581)
Q Consensus 282 ~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 359 (581)
..+..+..+..+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555666778887665 589999999999997775 78899999999999998888775 578899999999999988
Q ss_pred CCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPS 437 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l 437 (581)
.+..+..+.++++|++|++.++. ...+. .++.+++|+.|+++++. ....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~--------------------------- 139 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL--IQSF--------------------------- 139 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC--CCCC---------------------------
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc--ccee---------------------------
Confidence 76555667777777777776665 22222 34455555555555543 1110
Q ss_pred cccCC-CCCCCCCccEEEEeeccCCCCCcccccCCCCCC----eEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc
Q 035853 438 SIVLP-EYQFPPRLIELSLSNTELKYDPMPALEKLPHLR----VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE 512 (581)
Q Consensus 438 ~l~lp-~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~----~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 512 (581)
.+| ++..+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+. +.......+|+.|++++| .++.
T Consensus 140 --~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n-~l~~ 214 (276)
T 2z62_A 140 --KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTN-QLKS 214 (276)
T ss_dssp --CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSS-CCSC
T ss_pred --cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc--CccccCCCcccEEECCCC-ceee
Confidence 133 445556666666666665544444455444454 566666655422 112222336666666665 3555
Q ss_pred cccC-cccccccceEeeccCcC
Q 035853 513 WTME-NDAMPKLESLIINPCAY 533 (581)
Q Consensus 513 l~~~-~~~l~~L~~L~l~~c~~ 533 (581)
+|.. +..+++|+.|++++|+.
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCB
T ss_pred cCHhHhcccccccEEEccCCcc
Confidence 5443 35566666666666653
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.1e-20 Score=201.35 Aligned_cols=306 Identities=14% Similarity=0.022 Sum_probs=162.5
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCC----cccChh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSL----KHLPSS 319 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i----~~lp~~ 319 (581)
+++|++|.+.++....... ... ...+.++++|+.|++++|.+..+|..+..+++|++|+++.... ...+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~--~~l---~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISP--KDL---ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp CCCCCEEECTTCCCSSCCH--HHH---HHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred CCCccEEEeeccCCCccCH--HHH---HHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 4555555555444321110 122 3444555666666666655554444444555555555543211 122223
Q ss_pred hhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCC-CccCCCCCCcEeceecCC--CcchhhhCCCCCCC
Q 035853 320 LCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPG-KCCSSLENLNFISVLHPS--SCTQDILGRLPSLQ 396 (581)
Q Consensus 320 i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~ 396 (581)
+..+++|+.|+++++....+|..+..+++|++|++++|.+..... ..+..+++|++|++..+. ..++.....+++|+
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 334444444444444344455555556666666666665432111 223455555555555222 22222223445555
Q ss_pred eEEEee----------ecccchhchhhhcCCCCCCCEEEeecCC---c----c-----cCCccc---------c-cC---
Q 035853 397 TFRVHE----------NLSSYQSMLSNNLCPLLHLESLKLVDER---T----I-----ALQPSS---------I-VL--- 441 (581)
Q Consensus 397 ~L~l~~----------~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~----i-----~L~~l~---------l-~l--- 441 (581)
+|++++ |.......+......+++|++|+++.+. . + +|+.+. + ..
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 555552 2211111122222234444444443211 0 0 111111 2 21
Q ss_pred ---C-CCCCCCCccEEEEeecc--CCCCCccccc-CCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccc--
Q 035853 442 ---P-EYQFPPRLIELSLSNTE--LKYDPMPALE-KLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEE-- 512 (581)
Q Consensus 442 ---p-~~~~l~~L~~L~L~~~~--l~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-- 512 (581)
+ .+..+++|++|+++.|. +++..+..++ .+++|++|++++|.+.+..++....++++|+.|++++|+ +..
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHH
Confidence 1 13458999999998764 4444444444 489999999999988766555556789999999999997 442
Q ss_pred cccCcccccccceEeeccCcCCCC-CcccccCCCCccEEEeeCC
Q 035853 513 WTMENDAMPKLESLIINPCAYLKI-LPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 513 l~~~~~~l~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~c 555 (581)
++.....+++|+.|++++|..... +......+|.+....+...
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 444456899999999999994432 2223346788887777765
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=8.8e-19 Score=174.20 Aligned_cols=192 Identities=20% Similarity=0.220 Sum_probs=133.4
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|+++++.++.+| .+..+++|++|++++|.+..+|. ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 35667888888888877766 57778888888888888887776 778888888888888777776 4777888888888
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
++|.+.. ++ .+..+++|+.|++.++. ...+. ++.+++|+.|++++|. . ..++. +..+++|+.|+++++.
T Consensus 115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l-~~~~~-l~~l~~L~~L~l~~n~--- 184 (308)
T 1h6u_A 115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ--V-SDLTP-LANLSKLTTLKADDNK--- 184 (308)
T ss_dssp TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSC---
T ss_pred CCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc--C-CCChh-hcCCCCCCEEECCCCc---
Confidence 8887763 33 37777888888877777 33333 6677788888887774 2 22333 6666777777776644
Q ss_pred CCcccc-cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 434 LQPSSI-VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 434 L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
+ .+|.+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+.+
T Consensus 185 -----l~~~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 -----ISDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----CCCCGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred -----cCcChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 4 3333455667777777777665432 36677777777777666544
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=2.4e-18 Score=167.89 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecC
Q 035853 277 FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFG 355 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 355 (581)
+++|+.|+++++.++.++ .+..+++|++|++++|.+..++ .++++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 444444555544444333 2444444555555444444432 344444444444444444444332 2444444444444
Q ss_pred CcccC
Q 035853 356 SITLP 360 (581)
Q Consensus 356 ~~~~~ 360 (581)
+|.+.
T Consensus 118 ~n~l~ 122 (272)
T 3rfs_A 118 ENQLQ 122 (272)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 44443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.5e-18 Score=169.41 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=131.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~ 322 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++ .++.+++|++|++++|.++.+|.. +++
T Consensus 40 l~~L~~L~l~~~~i~~-----------~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 107 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-----------VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDK 107 (272)
T ss_dssp HTTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ccceeeeeeCCCCccc-----------ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcC
Confidence 7788888888877643 355788999999999999988765 788999999999999999977754 689
Q ss_pred ccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEE
Q 035853 323 LLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFR 399 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~ 399 (581)
+++|++|++++|.+..+|.. ++.+++|++|++++|.+.+..+..++.+++|+.|++.++. ...+ ..++.+++|+.|+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 99999999999999888765 6889999999999998885555557888888888888887 3333 3356777788887
Q ss_pred EeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 400 VHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 400 l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
+++|. .....+..+..+++|+.|++++
T Consensus 188 L~~N~--l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 188 LYQNQ--LKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCSSC--CSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCc--CCccCHHHHhCCcCCCEEEccC
Confidence 77775 3333333344555555555544
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=7.1e-18 Score=166.02 Aligned_cols=196 Identities=17% Similarity=0.121 Sum_probs=138.2
Q ss_pred hccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhhhcCCCCcEe
Q 035853 274 CKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHL 352 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L 352 (581)
+.++++++.++++++.++.+|..+. +++++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 5677888999999888888887765 6889999999988855 46788889999999999888888764 778889999
Q ss_pred ecCCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC
Q 035853 353 NFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER 430 (581)
Q Consensus 353 ~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~ 430 (581)
++++|.+. .+|..+..+++|+.|++.++. ..++ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--LKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC--CCccChhhcccccCCCEEECCCCc
Confidence 99988886 677777888888888888777 4333 456777777777777774 333333344556666666666544
Q ss_pred cccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcc
Q 035853 431 TIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSF 484 (581)
Q Consensus 431 ~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 484 (581)
+ .+| .+..+++|++|++++|.++ ..+..+..+++|+.+++++|.+
T Consensus 160 --------l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 --------LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp --------CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred --------CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 4 555 3455666666666666554 3444455555666666665543
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.2e-18 Score=166.60 Aligned_cols=110 Identities=16% Similarity=0.340 Sum_probs=65.4
Q ss_pred cccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCc-ccccch-hhhcCCCCcEeecCC-cccCCCCCC
Q 035853 290 LDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSY-IHHTPD-EIWKMNELRHLNFGS-ITLPAHPGK 365 (581)
Q Consensus 290 l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p~ 365 (581)
++.+|. +.. +|++|++++|.++.+|. .++++++|++|++++|. +..+|. .+..+++|++|++++ |.+....+.
T Consensus 23 l~~ip~-~~~--~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CCT--TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CCC--cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555665 332 67777777777776654 56667777777777774 666664 456667777777766 555533334
Q ss_pred ccCCCCCCcEeceecCC-CcchhhhCCCCCCC---eEEEeee
Q 035853 366 CCSSLENLNFISVLHPS-SCTQDILGRLPSLQ---TFRVHEN 403 (581)
Q Consensus 366 ~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~---~L~l~~~ 403 (581)
.+..+++|+.|++.++. ..++. ++.+++|+ .|+++++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCC
Confidence 45556666666665555 33332 44555555 6666655
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.2e-17 Score=162.68 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=147.1
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
.+.++++++++.++.+|..+. .+|++|++++|.+..+|. .+..+++|++|++++|.+....+..+.++++|++|++.
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 357889999999998887664 689999999998888875 57889999999999988874333345667777777766
Q ss_pred cCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEE
Q 035853 380 HPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELS 454 (581)
Q Consensus 380 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~ 454 (581)
++. ..++ ..+..+++|+.|+++++ . + .+| .+..+++|++|+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n--------------------------~--------l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN--------------------------Q--------LKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS--------------------------C--------CCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC--------------------------c--------cCeeCHHHhCcCcCCCEEE
Confidence 665 2222 22344555555555444 3 4 344 467788999999
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-CcccccccceEeeccCcC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPKLESLIINPCAY 533 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~ 533 (581)
+++|.+.......++.+++|+.|++++|.+.... +..+..+++|+.|++++| .+..++. .+..+++|+.|++++|+.
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999887766667899999999999988876543 344678899999999998 5777765 477899999999999985
Q ss_pred C
Q 035853 534 L 534 (581)
Q Consensus 534 l 534 (581)
.
T Consensus 218 ~ 218 (270)
T 2o6q_A 218 D 218 (270)
T ss_dssp C
T ss_pred e
Confidence 4
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=4.9e-18 Score=167.17 Aligned_cols=196 Identities=22% Similarity=0.208 Sum_probs=139.7
Q ss_pred ccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 297 INPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 297 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
++++++++.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|++|++++|.+.. ++.. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCE
Confidence 5678899999999999999997774 78999999999887775 568889999999999998863 3433 67888888
Q ss_pred eceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCcc
Q 035853 376 ISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLI 451 (581)
Q Consensus 376 L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~ 451 (581)
|+++++. ..++..+..+++|+.|+++++. .....+..+..+++|+.|+++++. + .+| .+..+++|+
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~--l~~l~~~~~~~l~~L~~L~L~~N~--------l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNR--LTSLPLGALRGLGELQELYLKGNE--------LKTLPPGLLTPTPKLE 151 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSC--CCCCCSSTTTTCTTCCEEECTTSC--------CCCCCTTTTTTCTTCC
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCc--CcccCHHHHcCCCCCCEEECCCCC--------CCccChhhcccccCCC
Confidence 8888777 6666667777788888887775 333334556667777777777654 5 555 456667777
Q ss_pred EEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 452 ELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 452 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
.|++++|.++......+..+++|+.|++++|.+.. ++......++|+.|++.+|+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCC
Confidence 77777776655444455667777777777666542 23344455667777776654
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=2.5e-19 Score=195.18 Aligned_cols=324 Identities=15% Similarity=0.112 Sum_probs=198.3
Q ss_pred CCCeeEEEEEecccCC-Cccccc---CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCccccc-----
Q 035853 222 LEDFKRISVCRTVTNF-DSWEHF---DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDE----- 292 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~-~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~----- 292 (581)
....+++.+. ..... ..+..+ +++|++|.+.++..... ..+ ...+.++++|++|++++|.++.
T Consensus 104 ~~~L~~L~L~-~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~----~~l---~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLK-RMVVTDDCLELIAKSFKNFKVLVLSSCEGFST----DGL---AAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp CTTCCEEEEE-SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH----HHH---HHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCCeEEee-CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH----HHH---HHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 3467888888 43322 122222 78999999988743220 123 4666789999999999998652
Q ss_pred CCCcccCcCCCcEEeccCCC--Cc--ccChhhhcccCCcEEEecCC-cccccchhhhcCCCCcEeecCCccc--------
Q 035853 293 YPAGINPLLLLKYLVLNIPS--LK--HLPSSLCNLLSLHTLDMRWS-YIHHTPDEIWKMNELRHLNFGSITL-------- 359 (581)
Q Consensus 293 lp~~i~~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~-------- 359 (581)
++.....+++|++|++++|. +. .++..+.++++|++|++++| .+..+|..+.++++|++|+++.+..
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33334467899999999886 32 33334466799999999998 7777888888888899888655421
Q ss_pred ------------------C----CCCCCccCCCCCCcEeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhh
Q 035853 360 ------------------P----AHPGKCCSSLENLNFISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNN 414 (581)
Q Consensus 360 ------------------~----~~~p~~i~~l~~L~~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~ 414 (581)
. ..++..+..+++|++|++.+|. ......+..+++|+.|++++|. ....++..
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l 333 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVL 333 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHH
Confidence 0 0122222356788888888776 2233346678888888888873 33344444
Q ss_pred cCCCCCCCEEEeec--------CCcc-------------cCCcccc---cCC-----CC-CCCCCccEEEEe--e---c-
Q 035853 415 LCPLLHLESLKLVD--------ERTI-------------ALQPSSI---VLP-----EY-QFPPRLIELSLS--N---T- 458 (581)
Q Consensus 415 l~~~~~L~~L~l~~--------~~~i-------------~L~~l~l---~lp-----~~-~~l~~L~~L~L~--~---~- 458 (581)
...+++|+.|++.. +..+ +|+.+.+ .+. .+ ..+++|++|+++ + |
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 44577888888833 1111 1111111 110 11 135666666666 2 2
Q ss_pred cCCCCCc-----ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccC-cccccccceEeeccCc
Q 035853 459 ELKYDPM-----PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTME-NDAMPKLESLIINPCA 532 (581)
Q Consensus 459 ~l~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~ 532 (581)
.++.... ..+..+++|+.|++++ .+.+..+......+++|+.|++++|......... ...+|+|+.|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 2221111 1144566777777754 3333322221223788999999887532222222 2568999999999998
Q ss_pred CCCC-CcccccCCCCccEEEeeCCC
Q 035853 533 YLKI-LPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 533 ~l~~-lp~~l~~l~~L~~L~l~~c~ 556 (581)
.... ++.....+++|++|++++|+
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 6322 22345668999999999998
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1e-19 Score=183.51 Aligned_cols=240 Identities=15% Similarity=0.139 Sum_probs=182.1
Q ss_pred CCcEEeccCCCCcccChhhhcc--cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCC-CCCccCCCCCCcEece
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNL--LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAH-PGKCCSSLENLNFISV 378 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L--~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~L~l 378 (581)
.++.++++++.+. |..+..+ ++++.|+++++.+...+..+..+++|++|++++|.+... +|..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4789999998876 5667777 899999999998877777788899999999999988654 7777899999999999
Q ss_pred ecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC-CcccCCcccc---cCC-CCCCCC-Cc
Q 035853 379 LHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE-RTIALQPSSI---VLP-EYQFPP-RL 450 (581)
Q Consensus 379 ~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~-~~i~L~~l~l---~lp-~~~~l~-~L 450 (581)
.++. ...+..++.+++|+.|++++|.......++..+..+++|++|+++++ . + .+| .+..++ +|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~--------l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD--------FTEKHVQVAVAHVSETI 197 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT--------CCHHHHHHHHHHSCTTC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC--------cChHHHHHHHHhcccCC
Confidence 9987 46677888999999999999841222246777888899999999986 4 4 255 567788 99
Q ss_pred cEEEEeec--cCC-CCCcccccCCCCCCeEEEecCc-ccCceeeeCCCCCCCCcEEEecCCCccccc-ccCcccccccce
Q 035853 451 IELSLSNT--ELK-YDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGGFPSLKVMHLKSMFWLEEW-TMENDAMPKLES 525 (581)
Q Consensus 451 ~~L~L~~~--~l~-~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~ 525 (581)
++|++++| .++ ...+..++.+++|++|++++|. +.+.. +..+..+++|++|++++|..+... ...+..+|+|+.
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 276 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 276 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCE
Confidence 99999998 444 2344567789999999999888 44443 335677899999999998643322 224678999999
Q ss_pred EeeccCcCCCCCcccccCC-CCccEEEeeCCC
Q 035853 526 LIINPCAYLKILPEELWRI-KSLTKLELWWPR 556 (581)
Q Consensus 526 L~l~~c~~l~~lp~~l~~l-~~L~~L~l~~c~ 556 (581)
|++++| +.. .++..+ .+|+.|++++|.
T Consensus 277 L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 277 LQVFGI--VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp EECTTS--SCT--TCHHHHHHHSTTSEESCCC
T ss_pred EeccCc--cCH--HHHHHHHhhCcceEEeccc
Confidence 999999 211 122222 235556676654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.1e-17 Score=166.19 Aligned_cols=191 Identities=19% Similarity=0.232 Sum_probs=156.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+
T Consensus 40 l~~L~~L~l~~~~i~~-----------l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-----------IEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred cCCcCEEEeeCCCccC-----------chhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 6788888888876643 2457789999999999999887776 889999999999999998876 68899
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..+|. +..+++|++|++++|.+.+ ++. ++.+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD 182 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC
Confidence 999999999998888876 8889999999999998874 333 8889999999999888 44444 88999999999999
Q ss_pred ecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCccEEEEeeccCCCC
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRLIELSLSNTELKYD 463 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~~ 463 (581)
+. . ..++. +..+++|+.|+++++. + .+|.+..+++|+.|++++|.++..
T Consensus 183 n~--l-~~~~~-l~~l~~L~~L~L~~N~--------l~~~~~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 183 NK--I-SDISP-LASLPNLIEVHLKNNQ--------ISDVSPLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp SC--C-CCCGG-GGGCTTCCEEECTTSC--------CCBCGGGTTCTTCCEEEEEEEEEECC
T ss_pred Cc--c-CcChh-hcCCCCCCEEEccCCc--------cCccccccCCCCCCEEEccCCeeecC
Confidence 85 3 23333 6788999999999865 5 555567899999999999987653
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=8.9e-20 Score=187.70 Aligned_cols=237 Identities=19% Similarity=0.113 Sum_probs=140.9
Q ss_pred HHHhccCCceeEEEecCcccc-c----CCCcccCcCCCcEEeccCCCCc----ccChhh-------hcccCCcEEEecCC
Q 035853 271 NAICKWFKFLRLLDLGTIVLD-E----YPAGINPLLLLKYLVLNIPSLK----HLPSSL-------CNLLSLHTLDMRWS 334 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~-~----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~~~ 334 (581)
...+..+++|++|+|++|.+. . ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 456777888888888888876 2 3445677888888888886544 344444 57788888888888
Q ss_pred cccc-----cchhhhcCCCCcEeecCCcccCCCCCCc----cCCC---------CCCcEeceecCC-C--cch---hhhC
Q 035853 335 YIHH-----TPDEIWKMNELRHLNFGSITLPAHPGKC----CSSL---------ENLNFISVLHPS-S--CTQ---DILG 390 (581)
Q Consensus 335 ~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l---------~~L~~L~l~~~~-~--~~~---~~l~ 390 (581)
.+.. +|..+.++++|++|++++|.+....+.. +..+ ++|++|++.++. . ..+ ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 6655 6777777888888888887764322222 2222 455555555544 1 111 2333
Q ss_pred CCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc--cCC-CCCCCCCccEEEEeeccCC----CC
Q 035853 391 RLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI--VLP-EYQFPPRLIELSLSNTELK----YD 463 (581)
Q Consensus 391 ~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l--~lp-~~~~l~~L~~L~L~~~~l~----~~ 463 (581)
.+++|+.|++++|. ....- + -+| ++..+++|++|+|++|.++ ..
T Consensus 185 ~~~~L~~L~L~~n~--l~~~g---------------------------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG--IRPEG---------------------------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp HCTTCCEEECCSSC--CCHHH---------------------------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred hCCCcCEEECcCCC--CCHhH---------------------------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 44455555555443 11000 0 122 3445566666666666653 23
Q ss_pred CcccccCCCCCCeEEEecCcccCce---eeeCC--CCCCCCcEEEecCCCcccc-----cccCc-ccccccceEeeccCc
Q 035853 464 PMPALEKLPHLRVLKLKKNSFFGRK---LVCSS--GGFPSLKVMHLKSMFWLEE-----WTMEN-DAMPKLESLIINPCA 532 (581)
Q Consensus 464 ~~~~l~~l~~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~ 532 (581)
.+..+..+++|++|+|++|.+.+.. ++..+ +.+++|+.|++++|. +.. +|..+ .++|+|++|++++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4455667777777777777665431 11122 346777777777774 443 56555 457888888888877
Q ss_pred CCCCC
Q 035853 533 YLKIL 537 (581)
Q Consensus 533 ~l~~l 537 (581)
.....
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 55443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.8e-17 Score=158.47 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=148.3
Q ss_pred EEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcc-cCCCCCCccCCCCCCcEeceec-C
Q 035853 305 YLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSIT-LPAHPGKCCSSLENLNFISVLH-P 381 (581)
Q Consensus 305 ~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~-~~~~~p~~i~~l~~L~~L~l~~-~ 381 (581)
.+.+....++.+|. +. .+|++|++++|.+..+|. .+..+++|++|++++|. +....+..++++++|++|++.+ +
T Consensus 15 ~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 15 DFRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91 (239)
T ss_dssp TTEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET
T ss_pred cceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC
Confidence 33434444778887 43 489999999999988887 57889999999999997 6533344677888888888887 5
Q ss_pred C-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeec-
Q 035853 382 S-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNT- 458 (581)
Q Consensus 382 ~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~- 458 (581)
. ..++ ..+..+++|+.|+++++. . ..+|. +..+++| ..|++|++++|
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~--l-~~lp~-~~~l~~L--------------------------~~L~~L~l~~N~ 141 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTG--L-KMFPD-LTKVYST--------------------------DIFFILEITDNP 141 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEEC--C-CSCCC-CTTCCBC--------------------------CSEEEEEEESCT
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCC--C-ccccc-ccccccc--------------------------ccccEEECCCCc
Confidence 5 4433 356677788888887774 1 22332 2222222 22337777777
Q ss_pred cCCCCCcccccCCCCCC-eEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Ccccc-cccceEeeccCcCCC
Q 035853 459 ELKYDPMPALEKLPHLR-VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAM-PKLESLIINPCAYLK 535 (581)
Q Consensus 459 ~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~ 535 (581)
.+.......++.+++|+ .|++++|.+. ......+.. ++|+.|++++|+.++.++. .+..+ ++|+.|++++|+ +.
T Consensus 142 ~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~ 218 (239)
T 2xwt_C 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VT 218 (239)
T ss_dssp TCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CC
T ss_pred chhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cc
Confidence 66554445577888888 8888877765 222222333 7899999998866777754 46778 999999999976 56
Q ss_pred CCcccccCCCCccEEEeeCCC
Q 035853 536 ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 536 ~lp~~l~~l~~L~~L~l~~c~ 556 (581)
.+|.. .+++|+.|++.++.
T Consensus 219 ~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 219 ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCT--TCTTCSEEECTTC-
T ss_pred cCChh--HhccCceeeccCcc
Confidence 77765 68899999998876
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.4e-17 Score=163.85 Aligned_cols=233 Identities=14% Similarity=0.136 Sum_probs=156.3
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcc-cccchh-hhcCCCCcE-eecCC
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYI-HHTPDE-IWKMNELRH-LNFGS 356 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l-~~lp~~-i~~l~~L~~-L~l~~ 356 (581)
++++.++++++++|..+. +++++|+|++|+|+.+|+ .++++++|++|+|++|.+ +.+|.+ +..+++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 677888888888888774 588999999999998886 478899999999999865 556654 567888765 44555
Q ss_pred cccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhh-hcCCC-CCCCEEEeecCCcc
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSN-NLCPL-LHLESLKLVDERTI 432 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~l~~~-~~L~~L~l~~~~~i 432 (581)
|.+....|..+..+++|+.|++.++. ...+. ......++..|++.++. ....++. .+..+ ..++.|++++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~--~i~~l~~~~f~~~~~~l~~L~L~~N~-- 165 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKNG-- 165 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSSC--
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccc--ccccccccchhhcchhhhhhcccccc--
Confidence 66665556677888888888888877 33322 23344556667776654 3333332 33333 356777777755
Q ss_pred cCCcccc-cCC-CCCCCCCccEEEEeec-cCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCc
Q 035853 433 ALQPSSI-VLP-EYQFPPRLIELSLSNT-ELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFW 509 (581)
Q Consensus 433 ~L~~l~l-~lp-~~~~l~~L~~L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 509 (581)
+ .+| ......+|++|.+.++ .++.-....++.+++|++|++++|.+.... ...|.+|+.|.+.++.+
T Consensus 166 ------i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 166 ------IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYN 235 (350)
T ss_dssp ------CCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCTT
T ss_pred ------ccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC----hhhhccchHhhhccCCC
Confidence 6 666 4445567777777653 433333345677777888888777664322 24567777777777777
Q ss_pred ccccccCcccccccceEeecc
Q 035853 510 LEEWTMENDAMPKLESLIINP 530 (581)
Q Consensus 510 l~~l~~~~~~l~~L~~L~l~~ 530 (581)
++.+|. +..+++|+.+++.+
T Consensus 236 l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 236 LKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCC-TTTCCSCCEEECSC
T ss_pred cCcCCC-chhCcChhhCcCCC
Confidence 777774 66777777777754
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.2e-19 Score=184.76 Aligned_cols=251 Identities=17% Similarity=0.145 Sum_probs=152.8
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-----cChhhhcccCCcEEEecCCccc----ccchhh-------
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-----LPSSLCNLLSLHTLDMRWSYIH----HTPDEI------- 343 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~----~lp~~i------- 343 (581)
|+...+....+..++..+..+++|++|++++|.+.. ++..+.++++|++|++++|.+. .+|.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 333333333444566666667777777777776652 3344556777777777776443 334433
Q ss_pred hcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCC
Q 035853 344 WKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCP 417 (581)
Q Consensus 344 ~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~ 417 (581)
..+++|++|++++|.+.. .+|..+..+++|++|++.+|. ...+ ..++..+..
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------------------~~l~~~l~~ 148 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG----------------------AKIARALQE 148 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH----------------------HHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH----------------------HHHHHHHHH
Confidence 466677777777766654 233344455555555555544 1001 111222222
Q ss_pred C---------CCCCEEEeecCCcccCCcccc-cCC-CCCCCCCccEEEEeeccCCCC----Ccc-cccCCCCCCeEEEec
Q 035853 418 L---------LHLESLKLVDERTIALQPSSI-VLP-EYQFPPRLIELSLSNTELKYD----PMP-ALEKLPHLRVLKLKK 481 (581)
Q Consensus 418 ~---------~~L~~L~l~~~~~i~L~~l~l-~lp-~~~~l~~L~~L~L~~~~l~~~----~~~-~l~~l~~L~~L~L~~ 481 (581)
+ ++|+.|+++++. +....+ .+. .+..+++|++|++++|.+... ..+ .+..+++|++|+|++
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNR---LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSC---CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred HhhhhhcccCCCCcEEECCCCC---CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcC
Confidence 2 455555555432 000000 111 233566788888888876532 233 788999999999999
Q ss_pred CcccC---ceeeeCCCCCCCCcEEEecCCCcccc-----cccCc--ccccccceEeeccCcCCC----CCcccc-cCCCC
Q 035853 482 NSFFG---RKLVCSSGGFPSLKVMHLKSMFWLEE-----WTMEN--DAMPKLESLIINPCAYLK----ILPEEL-WRIKS 546 (581)
Q Consensus 482 ~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~--~~l~~L~~L~l~~c~~l~----~lp~~l-~~l~~ 546 (581)
|.+.. ..++..+..+++|+.|++++|. +.. ++..+ +.+++|+.|++++|.... .+|..+ .++++
T Consensus 226 n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 226 NTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp SCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 98753 2234456788999999999985 443 34444 448999999999998554 388877 66899
Q ss_pred ccEEEeeCCC
Q 035853 547 LTKLELWWPR 556 (581)
Q Consensus 547 L~~L~l~~c~ 556 (581)
|++|++++|+
T Consensus 305 L~~L~l~~N~ 314 (386)
T 2ca6_A 305 LLFLELNGNR 314 (386)
T ss_dssp CCEEECTTSB
T ss_pred ceEEEccCCc
Confidence 9999999987
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=162.56 Aligned_cols=178 Identities=11% Similarity=0.028 Sum_probs=113.2
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccc-cCCCcc--cCcCCCcEEeccCCCCcc-cC--
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-EYPAGI--NPLLLLKYLVLNIPSLKH-LP-- 317 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-~lp~~i--~~l~~Lr~L~L~~~~i~~-lp-- 317 (581)
...++.+.+.+..... ..... ...+..+++|+.|++++|.+. ..|..+ +.+++|++|++++|.+.. .|
T Consensus 63 ~~~l~~l~l~~~~~~~-----~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~ 136 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPA-----QLLVG-ALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL 136 (310)
T ss_dssp SCCCCEEEECSCCCBH-----HHHHH-HHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH
T ss_pred hcceeEEEEeCCcCCH-----HHHHH-HHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh
Confidence 4456677766654422 11100 112234466999999999987 666666 888999999999998873 23
Q ss_pred --hhhhcccCCcEEEecCCcccccc-hhhhcCCCCcEeecCCcccCCC--C--CCccCCCCCCcEeceecCC-Ccchh--
Q 035853 318 --SSLCNLLSLHTLDMRWSYIHHTP-DEIWKMNELRHLNFGSITLPAH--P--GKCCSSLENLNFISVLHPS-SCTQD-- 387 (581)
Q Consensus 318 --~~i~~L~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~--p~~i~~l~~L~~L~l~~~~-~~~~~-- 387 (581)
..+..+++|++|++++|.+..+| ..++.+++|++|++++|.+.+. + +..++.+++|++|++.+|. ...+.
T Consensus 137 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 137 AELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred HHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 34456889999999998887766 4577888999999998876431 2 2234677788888887776 33332
Q ss_pred --hhCCCCCCCeEEEeeecccchhchhhhcCCC---CCCCEEEeecC
Q 035853 388 --ILGRLPSLQTFRVHENLSSYQSMLSNNLCPL---LHLESLKLVDE 429 (581)
Q Consensus 388 --~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~---~~L~~L~l~~~ 429 (581)
.++.+++|+.|++++|. .....|..+..+ ++|+.|+++++
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNS--LRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp HHHHHHTCCCSSEECTTSC--CCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred HHHHhcCCCCCEEECCCCC--CCccchhhHHhccCcCcCCEEECCCC
Confidence 13566777777777764 333334444333 34444444443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1.1e-16 Score=162.24 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=143.2
Q ss_pred cEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCC-ccCCCCCCcEeceec-
Q 035853 304 KYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGK-CCSSLENLNFISVLH- 380 (581)
Q Consensus 304 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~l~~- 380 (581)
+.++.++++++++|..+ ..++++|+|++|.++.+|.+ +..+++|++|++++|.+.+.+|. .+.++++++++....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 55666777777777665 35677777777777777754 56777777777777776555553 356677766544333
Q ss_pred CC-Ccc-hhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCC-CCccEEE
Q 035853 381 PS-SCT-QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFP-PRLIELS 454 (581)
Q Consensus 381 ~~-~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l-~~L~~L~ 454 (581)
+. ..+ +..+..+++|+.|+++++. .....+..+....++..|++..... + .+| .+..+ ..++.|+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~~l~~l~l~~~~~-------i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNIN-------IHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBSSCEEEEEESCTT-------CCEECTTSSTTSBSSCEEEE
T ss_pred CcccccCchhhhhccccccccccccc--cccCCchhhcccchhhhhhhccccc-------cccccccchhhcchhhhhhc
Confidence 33 333 3456677777777777774 3222223333444555666654211 3 444 33333 3567777
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccccceEeeccCcCC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYL 534 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l 534 (581)
+++|.++. .++.....++|+.|.+.+++.........+.++++|+.|++++| .++.+|. +.+.+|+.|.+.+|..+
T Consensus 161 L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 161 LNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNL 236 (350)
T ss_dssp CCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTC
T ss_pred cccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCc
Confidence 77776643 33333345667777776554444443344566777777777776 5666664 34667777777777777
Q ss_pred CCCcccccCCCCccEEEeeC
Q 035853 535 KILPEELWRIKSLTKLELWW 554 (581)
Q Consensus 535 ~~lp~~l~~l~~L~~L~l~~ 554 (581)
+.+| .+..+++|+.+++.+
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSC
T ss_pred CcCC-CchhCcChhhCcCCC
Confidence 7777 366777777777754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=2.9e-16 Score=151.19 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=119.5
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecC
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFG 355 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 355 (581)
...++++++++.++.+|..+. .+|++|++++|.+..++ ..++++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457889999999999988776 58999999999988665 4688899999999999988777654 6889999999999
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
+|.+....+..++.+++|++|++.++. ..++. .+..+++|+.|+++++. ..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~------------------------- 144 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ--LQ------------------------- 144 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC-------------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc--CC-------------------------
Confidence 998875555556777777777766665 33332 23455555555555553 11
Q ss_pred CCcccccCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 434 LQPSSIVLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 434 L~~l~l~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
.+| .+..+++|++|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 145 ------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 ------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 233 3445556666666666655444445666666666666666543
No 96
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=8.2e-19 Score=191.08 Aligned_cols=302 Identities=15% Similarity=0.080 Sum_probs=182.7
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc-cc--cCCCcccCcCCCcEEeccCCCCcc-----
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV-LD--EYPAGINPLLLLKYLVLNIPSLKH----- 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~-l~--~lp~~i~~l~~Lr~L~L~~~~i~~----- 315 (581)
+++|+.|.+.++.... ..+ ......+++|++|++++|. ++ .++..+.++++|++|++++|.++.
T Consensus 104 ~~~L~~L~L~~~~~~~-----~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTD-----DCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp CTTCCEEEEESCBCCH-----HHH---HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred CCCCCeEEeeCcEEcH-----HHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 7899999999886532 222 2333478999999999994 55 255555689999999999998653
Q ss_pred cChhhhcccCCcEEEecCCc--c--cccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC---------
Q 035853 316 LPSSLCNLLSLHTLDMRWSY--I--HHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS--------- 382 (581)
Q Consensus 316 lp~~i~~L~~L~~L~l~~~~--l--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~--------- 382 (581)
++.....+++|++|++++|. + ..++.-+..+++|++|++++|.....+|..+..+++|+.|++..+.
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33333467899999999985 2 2233334568999999999984333355556666777777643321
Q ss_pred -----------------------CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCC---cc----
Q 035853 383 -----------------------SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDER---TI---- 432 (581)
Q Consensus 383 -----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~---~i---- 432 (581)
..++..+..+++|+.|++++|. .....+...+..+++|+.|+++++- .+
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~ 334 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHH
Confidence 2233333456788888888886 2223344556778889999988731 00
Q ss_pred ----cCCcccc-cC------C--C---------CCCCCCccEEEEeeccCCCCCccccc-CCCCCCeEEEe--c----Cc
Q 035853 433 ----ALQPSSI-VL------P--E---------YQFPPRLIELSLSNTELKYDPMPALE-KLPHLRVLKLK--K----NS 483 (581)
Q Consensus 433 ----~L~~l~l-~l------p--~---------~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~--~----~~ 483 (581)
+|+.+.+ .. . . ...+++|++|.+..+.++...+..++ .+|+|+.|+++ + +.
T Consensus 335 ~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 335 STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 1222111 00 0 0 01255666665555554443333333 46677777776 2 22
Q ss_pred ccC----ceeeeCCCCCCCCcEEEecCCCccccc-ccCcc-cccccceEeeccCcCCCCCcccc-cCCCCccEEEeeCCC
Q 035853 484 FFG----RKLVCSSGGFPSLKVMHLKSMFWLEEW-TMEND-AMPKLESLIINPCAYLKILPEEL-WRIKSLTKLELWWPR 556 (581)
Q Consensus 484 ~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~-~l~~L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~c~ 556 (581)
+.. ..+......+++|+.|++++ .+... +..+. .+++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 221 11111134466777777755 22221 11222 37889999998887433222222 668999999999998
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=4.8e-18 Score=173.04 Aligned_cols=228 Identities=15% Similarity=0.169 Sum_probs=142.8
Q ss_pred HHHhccCCceeEEEecCcccccCC-----CcccCcC-CCcEEeccCCCCccc-Chhhhcc-----cCCcEEEecCCcccc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-----AGINPLL-LLKYLVLNIPSLKHL-PSSLCNL-----LSLHTLDMRWSYIHH 338 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~l~~ 338 (581)
+.++...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++|++|++++|.+..
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 455566666999999999988555 5667787 899999999998844 4566665 899999999998765
Q ss_pred cch-h----hhcC-CCCcEeecCCcccCCCCCCc----cCC-CCCCcEeceecCC-C-----cchhhhCCCC-CCCeEEE
Q 035853 339 TPD-E----IWKM-NELRHLNFGSITLPAHPGKC----CSS-LENLNFISVLHPS-S-----CTQDILGRLP-SLQTFRV 400 (581)
Q Consensus 339 lp~-~----i~~l-~~L~~L~l~~~~~~~~~p~~----i~~-l~~L~~L~l~~~~-~-----~~~~~l~~l~-~L~~L~l 400 (581)
.+. . +..+ ++|++|++++|.+....+.. +.. .++|++|+++++. . .++..+..++ +|+.|++
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence 543 2 4444 78999999999886544333 333 3578888888776 2 3344445555 7888888
Q ss_pred eeecccchhc----hhhhcCCC-CCCCEEEeecCCcccCCcccc-c-----CC-CCCC-CCCccEEEEeeccCCCCCc--
Q 035853 401 HENLSSYQSM----LSNNLCPL-LHLESLKLVDERTIALQPSSI-V-----LP-EYQF-PPRLIELSLSNTELKYDPM-- 465 (581)
Q Consensus 401 ~~~~~~~~~~----l~~~l~~~-~~L~~L~l~~~~~i~L~~l~l-~-----lp-~~~~-l~~L~~L~L~~~~l~~~~~-- 465 (581)
++|. .... +...+..+ ++|+.|+++++. + . +| .+.. .++|++|++++|.++....
T Consensus 175 s~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--------i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 175 RGNN--LASKNCAELAKFLASIPASVTSLDLSANL--------LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp TTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred cCCC--CchhhHHHHHHHHHhCCCCCCEEECCCCC--------CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 8775 3222 22334444 477777777644 3 2 33 2322 3467777777776655433
Q ss_pred --ccccCCCCCCeEEEecCcccCce------eeeCCCCCCCCcEEEecCCC
Q 035853 466 --PALEKLPHLRVLKLKKNSFFGRK------LVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 466 --~~l~~l~~L~~L~L~~~~~~~~~------~~~~~~~~~~L~~L~l~~~~ 508 (581)
..+..+++|+.|++++|.+.... +...+..+++|+.|+++++.
T Consensus 245 l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 22345566777777666532211 11233455556666666653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.4e-16 Score=156.86 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=85.1
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. +..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 45667777777777777665 36777777777777777776665 7777777777777777776654 777777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.. + ..+..+++|+.|++.++. ... ..+..+++|+.|++++|.
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc
Confidence 7777653 2 356666777777766666 322 456666666666666664
No 99
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=157.86 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=126.6
Q ss_pred CCCcEeecCCcccCCCCCCcc--CCCCCCcEeceecCC-Cc-c----hhhhCCCCCCCeEEEeeecccchhchhhhcCCC
Q 035853 347 NELRHLNFGSITLPAHPGKCC--SSLENLNFISVLHPS-SC-T----QDILGRLPSLQTFRVHENLSSYQSMLSNNLCPL 418 (581)
Q Consensus 347 ~~L~~L~l~~~~~~~~~p~~i--~~l~~L~~L~l~~~~-~~-~----~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~ 418 (581)
++|++|++++|.+.+..|..+ +.+++|++|++.++. .. . ...+..+++|+.|++++|. .....+..+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHhccC
Confidence 445555555555554444444 555555555555554 11 1 1233456677777777765 444445566677
Q ss_pred CCCCEEEeecCCcccCCcccc----cC--C-CCCCCCCccEEEEeeccCCCCCcc----cccCCCCCCeEEEecCcccCc
Q 035853 419 LHLESLKLVDERTIALQPSSI----VL--P-EYQFPPRLIELSLSNTELKYDPMP----ALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 419 ~~L~~L~l~~~~~i~L~~l~l----~l--p-~~~~l~~L~~L~L~~~~l~~~~~~----~l~~l~~L~~L~L~~~~~~~~ 487 (581)
++|+.|+++++. + .+ + ++..+++|++|++++|.++. .+. .++.+++|++|++++|.+.+.
T Consensus 169 ~~L~~L~Ls~N~--------l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 169 PALTSLDLSDNP--------GLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TTCCEEECCSCT--------TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCCEEECCCCC--------CccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 777777777643 2 13 2 45678888899998888742 122 246789999999998888665
Q ss_pred eeeeCCCC---CCCCcEEEecCCCcccccccCcccccccceEeeccCcCCCCCcccccCCCCccEEEeeCCC
Q 035853 488 KLVCSSGG---FPSLKVMHLKSMFWLEEWTMENDAMPKLESLIINPCAYLKILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 488 ~~~~~~~~---~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c~ 556 (581)
. +..+.. +++|++|++++| .++.+|..+. ++|+.|++++|. +..+|. +..+++|++|++++|+
T Consensus 240 ~-p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 V-NPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C-CSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred c-hhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 3 222333 379999999988 5778877653 899999999986 556664 6788999999999987
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=2.2e-16 Score=170.53 Aligned_cols=170 Identities=20% Similarity=0.184 Sum_probs=91.9
Q ss_pred ccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeec
Q 035853 275 KWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNF 354 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 354 (581)
..+++|+.|+++++.+..+| .+..+++|++|+|++|.+..+|. ++.+++|+.|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 34555666666666655554 35566666666666666665554 566666666666666555554 3556666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCccc
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIA 433 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~ 433 (581)
++|.+.. + ..+..+++|+.|+++++. ..+ ..+..+++|+.|++++|. .....| +..+++|+.|+++++.
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~--- 186 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKNH--- 186 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSSC---
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCCC---
Confidence 6665542 2 245555666666665555 222 445555666666666553 222222 4455555555555433
Q ss_pred CCcccc-cCCCCCCCCCccEEEEeeccCCC
Q 035853 434 LQPSSI-VLPEYQFPPRLIELSLSNTELKY 462 (581)
Q Consensus 434 L~~l~l-~lp~~~~l~~L~~L~L~~~~l~~ 462 (581)
+ .+|.+..+++|+.|+|++|.+..
T Consensus 187 -----i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 -----ISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -----CCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred -----CCCChHHccCCCCCEEEccCCcCcC
Confidence 3 33334445555555555554433
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=9e-18 Score=171.02 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=170.8
Q ss_pred EEEecCcccc-cCCCcccCcCCCcEEeccCCCCcccC-----hhhhccc-CCcEEEecCCccccc-chhhhcC-----CC
Q 035853 282 LLDLGTIVLD-EYPAGINPLLLLKYLVLNIPSLKHLP-----SSLCNLL-SLHTLDMRWSYIHHT-PDEIWKM-----NE 348 (581)
Q Consensus 282 ~L~L~~~~l~-~lp~~i~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~l~~~~l~~l-p~~i~~l-----~~ 348 (581)
.++++.+.++ .+|..+....+|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3578888887 55555556667999999999998766 5677888 899999999988665 4455554 89
Q ss_pred CcEeecCCcccCCCCCCc----cCCC-CCCcEeceecCC--Cc----chhhhCCC-CCCCeEEEeeec--ccchhchhhh
Q 035853 349 LRHLNFGSITLPAHPGKC----CSSL-ENLNFISVLHPS--SC----TQDILGRL-PSLQTFRVHENL--SSYQSMLSNN 414 (581)
Q Consensus 349 L~~L~l~~~~~~~~~p~~----i~~l-~~L~~L~l~~~~--~~----~~~~l~~l-~~L~~L~l~~~~--~~~~~~l~~~ 414 (581)
|++|++++|.+....+.. +..+ ++|++|+++++. .. +...+..+ ++|+.|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 3344 789999999888 22 22335553 689999999886 1122355566
Q ss_pred cCCCC-CCCEEEeecCCcccCCcccc-cCC--C----CCCC-CCccEEEEeeccCCCCCc----ccccC-CCCCCeEEEe
Q 035853 415 LCPLL-HLESLKLVDERTIALQPSSI-VLP--E----YQFP-PRLIELSLSNTELKYDPM----PALEK-LPHLRVLKLK 480 (581)
Q Consensus 415 l~~~~-~L~~L~l~~~~~i~L~~l~l-~lp--~----~~~l-~~L~~L~L~~~~l~~~~~----~~l~~-l~~L~~L~L~ 480 (581)
+...+ +|+.|+++++. + ..+ . +..+ ++|++|+|++|.+..... ..+.. .++|++|+++
T Consensus 162 l~~~~~~L~~L~Ls~n~--------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN--------LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp HHTSCTTCCEEECTTSC--------GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred HhcCCccccEeeecCCC--------CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 66665 88999888855 4 222 2 2334 588888888887765332 23444 4588888888
Q ss_pred cCcccCcee---eeCCCCCCCCcEEEecCCC-------cccccccCcccccccceEeeccCcCCC
Q 035853 481 KNSFFGRKL---VCSSGGFPSLKVMHLKSMF-------WLEEWTMENDAMPKLESLIINPCAYLK 535 (581)
Q Consensus 481 ~~~~~~~~~---~~~~~~~~~L~~L~l~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~ 535 (581)
+|.+.+... ......+++|+.|++++|. .+..++..+..+++|+.|++++|+.-.
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 887766432 3345677888888888874 122344556677888888888887433
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=2.2e-15 Score=160.88 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=131.7
Q ss_pred CceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCc
Q 035853 278 KFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 357 (581)
.+|+.|+++++.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999998888774 78999999999999998 568999999999999988988 655 9999999999
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
.+.+ +|. .+++|+.|+++++. ..++. .+++|+.|++++|. ...+|. +. ++|+.|+++++.
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~------ 191 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNL------ 191 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSC------
T ss_pred cCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCC------
Confidence 9875 665 67889999988887 54554 56788888888884 233555 44 677777777755
Q ss_pred ccc-cCCCCCCCCCc-------cEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc
Q 035853 437 SSI-VLPEYQFPPRL-------IELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 437 l~l-~lp~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 487 (581)
+ .+|.+.. +| +.|++++|.++ ..+..+..+++|+.|++++|.+.+.
T Consensus 192 --L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 192 --LESLPAVPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp --CSSCCCCC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred --CCchhhHHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 5 5553111 44 66777766654 3444555566666666666665443
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=4.3e-15 Score=142.95 Aligned_cols=171 Identities=20% Similarity=0.243 Sum_probs=122.8
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
...++++++++.++.+|..+. .+|+.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|++|++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 467788888888888887765 688999999988877764 57888899999998888876666566777777777766
Q ss_pred cCC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEE
Q 035853 380 HPS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELS 454 (581)
Q Consensus 380 ~~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~ 454 (581)
++. ..++ ..+..+++|+.|+++++ . + .+| .+..+++|++|+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N--------------------------~--------l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN--------------------------Q--------LKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS--------------------------C--------CCCCCTTTTTTCTTCCEEE
T ss_pred CCcccccChhHhcccCCCCEEEcCCC--------------------------c--------CCCcChhHhccCCcccEEE
Confidence 665 2222 23344444444444444 2 4 444 356788888888
Q ss_pred EeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCC
Q 035853 455 LSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMF 508 (581)
Q Consensus 455 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 508 (581)
+++|.++...+..++.+++|++|++++|.+.+.. +..+..+++|+.|++++|+
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCc
Confidence 8888887666567888899999999888776443 3456778888888888875
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.4e-15 Score=139.29 Aligned_cols=176 Identities=21% Similarity=0.207 Sum_probs=111.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 456677777777776553 4788888888888766653 57788888888888877777765 4677888888888887
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCc
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQP 436 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~ 436 (581)
+....+..++.+++|+.|++.++. ..++. .+..+++|+.|+++++. .....+..+..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~------ 159 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP------ 159 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC------
Confidence 764444446777777777777766 33333 35667777777777664 322222334555555555555532
Q ss_pred ccccCCCCCCCCCccEEEEeeccCCCCCcccccCCC
Q 035853 437 SSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLP 472 (581)
Q Consensus 437 l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 472 (581)
+.+.+++|++|+++.|.+++..+..++.++
T Consensus 160 ------~~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 ------WDCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ------BCCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ------eecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 233455555555555555555555554443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.8e-15 Score=163.42 Aligned_cols=189 Identities=19% Similarity=0.213 Sum_probs=151.0
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCccc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITL 359 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 359 (581)
+..+.+..+.+..++ .+..+.+|++|++++|.+..+| .++.+++|+.|+|++|.+..+|. +..+++|++|++++|.+
T Consensus 23 l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 444556666665443 3568899999999999999887 69999999999999999999887 89999999999999998
Q ss_pred CCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc
Q 035853 360 PAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI 439 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l 439 (581)
.. +| .++.+++|+.|+++++.-..+..+..+++|+.|++++|. ... + ..+..+++|+.|+++++. +
T Consensus 100 ~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~~-l-~~l~~l~~L~~L~Ls~N~--------l 165 (605)
T 1m9s_A 100 KD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--ITD-I-TVLSRLTKLDTLSLEDNQ--------I 165 (605)
T ss_dssp CC-CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CCC-C-GGGGSCTTCSEEECCSSC--------C
T ss_pred CC-Ch-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cCC-c-hhhcccCCCCEEECcCCc--------C
Confidence 63 44 789999999999999982224568899999999999996 322 2 567788889999988855 5
Q ss_pred -cCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCc
Q 035853 440 -VLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGR 487 (581)
Q Consensus 440 -~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 487 (581)
.++.+..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+.+.
T Consensus 166 ~~~~~l~~l~~L~~L~Ls~N~i~~--l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCchhhccCCCCCEEECcCCCCCC--ChHHccCCCCCEEEccCCcCcCC
Confidence 43336678888888888888754 35688888888888888777554
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=7.3e-15 Score=144.54 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=125.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNL 323 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 323 (581)
+++++.|.+.++.... .+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+
T Consensus 45 l~~L~~L~l~~~~i~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-----------VQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCC-----------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTC
T ss_pred cCcccEEEccCCCccc-----------ChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccC
Confidence 6678888887776643 2447788899999999999887766 888899999999999888876 48889
Q ss_pred cCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEee
Q 035853 324 LSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHE 402 (581)
Q Consensus 324 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~ 402 (581)
++|++|++++|.+..++ .+..+++|++|++++|.+... ..++.+++|+.|++.++. ...+. +..+++|+.|++++
T Consensus 112 ~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp TTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred CCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCC
Confidence 99999999999888875 488889999999999888643 578888999999998888 44444 88888888888888
Q ss_pred ecccchhchhhhcCCCCCCCEEEeec
Q 035853 403 NLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 403 ~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
|. ...++ .+..+++|+.|++++
T Consensus 188 N~---i~~l~-~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 188 NH---ISDLR-ALAGLKNLDVLELFS 209 (291)
T ss_dssp SC---CCBCG-GGTTCTTCSEEEEEE
T ss_pred Cc---CCCCh-hhccCCCCCEEECcC
Confidence 85 22222 244444555554444
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=3.5e-15 Score=159.33 Aligned_cols=185 Identities=17% Similarity=0.148 Sum_probs=124.4
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
+|++|++++|.++.+|..+ +++|++|++++|.+..+| ..+++|++|++++|.+.+ +|. +++ +|+.|+++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 8999999999999999877 488999999999999999 458899999999998875 776 554 8888888877
Q ss_pred C-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEeeccC
Q 035853 382 S-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSNTEL 460 (581)
Q Consensus 382 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~~~l 460 (581)
. ..++. .+++|+.|++++|. . ..+|. . +++|++|++++|.+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~--l-~~lp~---~-----------------------------l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ--L-TMLPE---L-----------------------------PTSLEVLSVRNNQL 172 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC--C-SCCCC---C-----------------------------CTTCCEEECCSSCC
T ss_pred cCCCCCC---cCccccEEeCCCCc--c-CcCCC---c-----------------------------CCCcCEEECCCCCC
Confidence 7 44444 56677777777764 1 12332 2 34555555555555
Q ss_pred CCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCC-------cEEEecCCCcccccccCcccccccceEeeccCcC
Q 035853 461 KYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSL-------KVMHLKSMFWLEEWTMENDAMPKLESLIINPCAY 533 (581)
Q Consensus 461 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 533 (581)
++ .+. ++ ++|+.|++++|.+... +. +.. +| +.|++++| .++.+|..+..+++|+.|++++|+.
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~~l--p~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLESL--PA-VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCSSC--CC-CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CC-cch-hh--CCCCEEECcCCCCCch--hh-HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 44 222 33 6666666666655421 21 111 44 77777776 5666777666777777777777775
Q ss_pred CCCCcccccC
Q 035853 534 LKILPEELWR 543 (581)
Q Consensus 534 l~~lp~~l~~ 543 (581)
...+|..+..
T Consensus 243 ~~~~p~~l~~ 252 (571)
T 3cvr_A 243 SSRIRESLSQ 252 (571)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHH
Confidence 5555554443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.8e-15 Score=138.59 Aligned_cols=152 Identities=14% Similarity=0.171 Sum_probs=93.6
Q ss_pred cCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEec
Q 035853 298 NPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFIS 377 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 377 (581)
..+++|++|++++|.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|+.|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45666777777777666666 5666777777777776555554 466677777777777766555566666666666666
Q ss_pred eecCC--CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEE
Q 035853 378 VLHPS--SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSL 455 (581)
Q Consensus 378 l~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L 455 (581)
++++. ...+..++.+++|+.|++++|. ....++ . +..+++|++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~--~i~~~~-~-----------------------------l~~l~~L~~L~l 166 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNG--AITDIM-P-----------------------------LKTLPELKSLNI 166 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCT--BCCCCG-G-----------------------------GGGCSSCCEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCC--CccccH-h-----------------------------hcCCCCCCEEEC
Confidence 66665 2345566667777777776663 122222 2 234556666666
Q ss_pred eeccCCCCCcccccCCCCCCeEEEecCccc
Q 035853 456 SNTELKYDPMPALEKLPHLRVLKLKKNSFF 485 (581)
Q Consensus 456 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 485 (581)
++|.++. .+.+..+++|+.|++++|.+.
T Consensus 167 ~~n~i~~--~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 167 QFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTBCCCC--CTTGGGCSSCCEEEECBC---
T ss_pred CCCCCcC--hHHhccCCCCCEEEeeCcccC
Confidence 6666543 226677788888888777653
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=3.7e-15 Score=144.29 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=110.4
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecC
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFG 355 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 355 (581)
.+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 3455666777777777666 5777888888888888888777 67788888888888888877777 7788888888888
Q ss_pred CcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccC
Q 035853 356 SITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIAL 434 (581)
Q Consensus 356 ~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L 434 (581)
+|.+.+ +|.. .. ++|+.|++.++. ... ..+..+++|+.|++++|. . ..++ .+.
T Consensus 94 ~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~--i-~~~~-~l~------------------ 147 (263)
T 1xeu_A 94 RNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNK--L-KSIV-MLG------------------ 147 (263)
T ss_dssp SSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSC--C-CBCG-GGG------------------
T ss_pred CCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCc--C-CCCh-HHc------------------
Confidence 887763 4432 22 677777777766 332 346667777777776664 1 1111 233
Q ss_pred CcccccCCCCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC
Q 035853 435 QPSSIVLPEYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG 486 (581)
Q Consensus 435 ~~l~l~lp~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 486 (581)
.+++|++|++++|.+.+. ..++.+++|+.|++++|.+..
T Consensus 148 -----------~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 148 -----------FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----------GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----------cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 344555555555554332 445566666666666655543
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=2.2e-14 Score=133.73 Aligned_cols=176 Identities=15% Similarity=0.237 Sum_probs=103.5
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
-+.++.+++.++.+|..+ ..+|++|++++|.+..+|.. +..+++|++|++++|.+....+..+..+++|++|++.++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 467788888888888665 46899999999988888765 578889999999988877443344566666666666655
Q ss_pred C-Ccchh-hhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEe
Q 035853 382 S-SCTQD-ILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLS 456 (581)
Q Consensus 382 ~-~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~ 456 (581)
. ..++. .+..+++|+.|+++++. + .+| .+..+++|++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~----------------------------------l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQ----------------------------------LQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC----------------------------------CCCCCTTTTTTCTTCCEEECC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCc----------------------------------CcccCHhHhccCCcCCEEECC
Confidence 4 22222 23444444444444442 2 233 24455556666666
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccccCcccccc
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTMENDAMPK 522 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~ 522 (581)
+|.+++.....++.+++|+.|++++|.+. ..+++|+.|.++.+.....+|..++.++.
T Consensus 133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 65554443344555666666666655332 23445555555554333345544444443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=4.5e-15 Score=137.19 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=69.2
Q ss_pred cCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcEeec
Q 035853 276 WFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRHLNF 354 (581)
Q Consensus 276 ~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 354 (581)
.+++|+.|+++++.++.+| .+..+++|++|++++|.++.++ .++.+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3445555666655555555 4555556666666655544433 45555666666666555443 3444555556666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+....|..++.+++|++|++.+|. ......+..+++|+.|++++|.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence 6655554445555555666666655554 2222245555666666666553
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=5.9e-15 Score=142.92 Aligned_cols=171 Identities=18% Similarity=0.101 Sum_probs=130.9
Q ss_pred CcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 299 PLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
.+.++..++++++.++.++ .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.+ ++. ++.+++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 5677888899999999887 6889999999999999999998 68899999999999998874 443 788888888888
Q ss_pred ecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCCCCCCCCCccEEEEee
Q 035853 379 LHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLPEYQFPPRLIELSLSN 457 (581)
Q Consensus 379 ~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp~~~~l~~L~~L~L~~ 457 (581)
.++. ..++. +.. ++|+.|++++|. .. .+|.+..+++|+.|++++
T Consensus 93 ~~N~l~~l~~-~~~-~~L~~L~L~~N~--l~-------------------------------~~~~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 93 NRNRLKNLNG-IPS-ACLSRLFLDNNE--LR-------------------------------DTDSLIHLKNLEILSIRN 137 (263)
T ss_dssp CSSCCSCCTT-CCC-SSCCEEECCSSC--CS-------------------------------BSGGGTTCTTCCEEECTT
T ss_pred CCCccCCcCc-ccc-CcccEEEccCCc--cC-------------------------------CChhhcCcccccEEECCC
Confidence 8776 33332 222 666666666663 11 222345567788888888
Q ss_pred ccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc
Q 035853 458 TELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT 514 (581)
Q Consensus 458 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 514 (581)
|.+++. +.++.+++|+.|++++|.+.+. ..+..+++|+.|++++++ +...|
T Consensus 138 N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~-~~~~~ 188 (263)
T 1xeu_A 138 NKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQK-CVNEP 188 (263)
T ss_dssp SCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEE-EECCC
T ss_pred CcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCc-ccCCc
Confidence 876543 4789999999999999988765 457889999999999984 44333
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=5.5e-14 Score=142.81 Aligned_cols=122 Identities=18% Similarity=0.229 Sum_probs=91.6
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hh-cccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LC-NLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+. ..+++|+|++|.++.+|.. +. ++++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 678888888888887765 3688899999998877754 44 78899999999998888874 4788889999999988
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+....+..+..+++|+.|++.++. .. .+..+..+++|+.|+++++.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc
Confidence 8875444557777777777777766 22 24456666666666666663
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=2.3e-13 Score=127.92 Aligned_cols=122 Identities=17% Similarity=0.239 Sum_probs=79.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. .+|++|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777777776655 577777777777776654 567777777777777777665 5567777777777777777
Q ss_pred cCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+....+..+..+++|+.|++.++. ...+..+..+++|+.|+++++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence 763333335666666666666665 2223445555555555555553
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.1e-13 Score=128.22 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=84.7
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccC--hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLP--SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+.. .+++|++++|.++.++ ..++++++|++|++++|.+..++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5778888888877776643 5678888888888663 236788888888888887777765 5777888888888888
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC-C-cchhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS-S-CTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~-~-~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+.+..+..++.+++|++|+++++. . ..+..+..+++|+.|+++++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 140 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc
Confidence 7765555556677777777766665 2 224445556666666666553
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2.6e-13 Score=128.42 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=86.5
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++.+++.+..+|..+. ++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 567777777777777665 6788888888888755 56677888888888888888777754 4678888888888887
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+....+..+..+++|+.|++.++. ..++..+..+++|+.|+++++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence 764444445667777777776666 5555555666666666666653
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.3e-13 Score=123.73 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=89.6
Q ss_pred ccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcE
Q 035853 275 KWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRH 351 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 351 (581)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 34567778888887776 7777777777888888887777766 567777778888887777666 6666666778888
Q ss_pred eecCCcccCCCCC--CccCCCCCCcEeceecCC-Ccchh----hhCCCCCCCeEEEeeec
Q 035853 352 LNFGSITLPAHPG--KCCSSLENLNFISVLHPS-SCTQD----ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 352 L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~-~~~~~----~l~~l~~L~~L~l~~~~ 404 (581)
|++++|.+.+ +| ..++.+++|+.|++.++. ...+. .+..+++|+.|++++|.
T Consensus 100 L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8887777653 32 556677777777776666 33333 56667777777776663
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=4e-16 Score=167.44 Aligned_cols=120 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred CcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCCCCCCCCCc
Q 035853 373 LNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLPEYQFPPRL 450 (581)
Q Consensus 373 L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp~~~~l~~L 450 (581)
|+.|+++++. ..++. ++.+++|+.|++++|. ...+|..++.+++|+.|+++++. + .+|.++.+++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~---l~~lp~~~~~l~~L~~L~Ls~N~--------l~~lp~l~~l~~L 510 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR---LRALPPALAALRCLEVLQASDNA--------LENVDGVANLPRL 510 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC---CCCCCGGGGGCTTCCEEECCSSC--------CCCCGGGTTCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccc---ccccchhhhcCCCCCEEECCCCC--------CCCCcccCCCCCC
Confidence 4444444444 33332 4445555555555552 22445555555555555555543 4 44445567777
Q ss_pred cEEEEeeccCCCCC-cccccCCCCCCeEEEecCcccCceee--eCCCCCCCCcEEEe
Q 035853 451 IELSLSNTELKYDP-MPALEKLPHLRVLKLKKNSFFGRKLV--CSSGGFPSLKVMHL 504 (581)
Q Consensus 451 ~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~L~~L~l 504 (581)
++|+|++|.+++.. +..++.+++|+.|++++|.+.+.... .....+|+|+.|++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777778776655 77788888888888888877654311 01223778887753
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=4.9e-13 Score=126.55 Aligned_cols=135 Identities=21% Similarity=0.229 Sum_probs=84.3
Q ss_pred cccccCCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCc-ccCcCCCcEEeccCCCCcccC
Q 035853 239 SWEHFDTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAG-INPLLLLKYLVLNIPSLKHLP 317 (581)
Q Consensus 239 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~-i~~l~~Lr~L~L~~~~i~~lp 317 (581)
++..+.++++.|.+.++.... .. +..|..+++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|
T Consensus 34 ip~~~~~~L~~L~Ls~n~i~~------~~---~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 34 VPAGIPTNAQILYLHDNQITK------LE---PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104 (229)
T ss_dssp CCSCCCTTCSEEECCSSCCCC------CC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCCCCCCCEEEcCCCccCc------cC---HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC
Confidence 444345667777776666543 22 34566667777777777776655533 466677777777777766665
Q ss_pred hh-hhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 318 SS-LCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 318 ~~-i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.. +..+++|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.|++.++.
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 43 466777777777777666777666667777777777766654333445566666666655554
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=4.4e-13 Score=126.01 Aligned_cols=126 Identities=11% Similarity=0.150 Sum_probs=70.4
Q ss_pred ceeEEEecCcccccCC--CcccCcCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 279 FLRLLDLGTIVLDEYP--AGINPLLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 279 ~Lr~L~L~~~~l~~lp--~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
.+++|++++|.++.++ ..+..+++|++|++++|.++.++. .++++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3455666666655442 225555666666666666554443 455566666666666655555443 455666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Cc-chhhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SC-TQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~-~~~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.+..|..+..+++|+.|++.++. .. .+..+..+++|+.|+++++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 6666555445555566666666665555 22 24455566666666666554
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=5.9e-13 Score=125.10 Aligned_cols=127 Identities=19% Similarity=0.260 Sum_probs=78.0
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|+.|++++|.++.+|. .+..+++|++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666664443 466666666666666666644 45566666666666666666666654 355666666666
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC-Ccch-hhhCCCCCCCeEEEeeec
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS-SCTQ-DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~-~~l~~l~~L~~L~l~~~~ 404 (581)
++|.+.+..|..+..+++|+.|++.++. ..++ ..+..+++|+.|+++++.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 6666665555566666666666666665 3222 335566666666666654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4e-13 Score=120.51 Aligned_cols=134 Identities=14% Similarity=0.127 Sum_probs=112.6
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-cChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-LPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~ 322 (581)
.++++.|.+.++.... ... +..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++
T Consensus 23 ~~~L~~L~l~~n~l~~-----~~i---~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-----GKI---EGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBT-----TBC---SSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCCh-----hhH---HHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 5778888888877641 012 45578899999999999999877 789999999999999999996 8888888
Q ss_pred ccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCC---CccCCCCCCcEeceecCC-Ccch
Q 035853 323 LLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPG---KCCSSLENLNFISVLHPS-SCTQ 386 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~~~~-~~~~ 386 (581)
+++|++|++++|.+..+| ..+..+++|++|++++|.+....+ ..+..+++|+.|++.++. ...+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999999999999887 678999999999999999984433 378999999999999987 4443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.3e-13 Score=121.07 Aligned_cols=125 Identities=17% Similarity=0.132 Sum_probs=84.2
Q ss_pred ccCCceeEEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccc-cchhhhcCCCCcE
Q 035853 275 KWFKFLRLLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHH-TPDEIWKMNELRH 351 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-lp~~i~~l~~L~~ 351 (581)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 34567788888888776 7777777778888888888877766 567777888888888887766 6666666788888
Q ss_pred eecCCcccCCC-CCCccCCCCCCcEeceecCC-Ccch----hhhCCCCCCCeEEE
Q 035853 352 LNFGSITLPAH-PGKCCSSLENLNFISVLHPS-SCTQ----DILGRLPSLQTFRV 400 (581)
Q Consensus 352 L~l~~~~~~~~-~p~~i~~l~~L~~L~l~~~~-~~~~----~~l~~l~~L~~L~l 400 (581)
|++++|.+.+. .+..++.+++|++|++.++. ...+ ..+..+++|+.|++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 88887776531 22456666666666666655 2222 23455555555543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=4e-13 Score=117.92 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=106.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcc-cChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKH-LPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~ 322 (581)
.++++.|.+.++.... ... +..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.
T Consensus 16 ~~~l~~L~l~~n~l~~-----~~~---~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNE-----GKL---EGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBT-----TBC---CSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCcCCh-----hHH---HHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 5678888888877641 012 45678899999999999999877 789999999999999999996 8888888
Q ss_pred ccCCcEEEecCCcccccc--hhhhcCCCCcEeecCCcccCCCCC---CccCCCCCCcEecee
Q 035853 323 LLSLHTLDMRWSYIHHTP--DEIWKMNELRHLNFGSITLPAHPG---KCCSSLENLNFISVL 379 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~i~~l~~L~~L~l~ 379 (581)
+++|++|++++|.+..+| ..++.+++|++|++++|.+.+..+ ..++.+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999998876 778999999999999999875443 368889999999875
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=8.8e-13 Score=133.93 Aligned_cols=171 Identities=22% Similarity=0.275 Sum_probs=136.3
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-h-cCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-W-KMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~-~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
-+.++++++.++.+|..+. ..++.|+|++|.+..+|... . .+++|+.|++++|.+....+..+.++++|+.|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4789999999999998764 56999999999999988764 4 899999999999999866666799999999999999
Q ss_pred CC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-C-C---CCCCCccE
Q 035853 381 PS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-E-Y---QFPPRLIE 452 (581)
Q Consensus 381 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-~-~---~~l~~L~~ 452 (581)
+. ..++ ..+..+++|+.|+++++. .....+..+..+++|+.|+++++. + .+| . + ..+++|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~--------l~~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQ--------ISRFPVELIKDGNKLPKLML 167 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSC--------CCSCCGGGTC----CTTCCE
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCc--------CCeeCHHHhcCcccCCcCCE
Confidence 88 4444 357889999999999986 555556778888889998888866 6 677 3 3 56888888
Q ss_pred EEEeeccCCCCCcccccCCCC--CCeEEEecCccc
Q 035853 453 LSLSNTELKYDPMPALEKLPH--LRVLKLKKNSFF 485 (581)
Q Consensus 453 L~L~~~~l~~~~~~~l~~l~~--L~~L~L~~~~~~ 485 (581)
|+|++|.++......+..++. |+.|++++|.+.
T Consensus 168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888888877666566777776 477888877653
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.3e-12 Score=144.45 Aligned_cols=154 Identities=19% Similarity=0.123 Sum_probs=102.0
Q ss_pred CCCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 222 LEDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 222 ~~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
...++++++. .......+... ..+|+.+.+.......-. . ..+ ...+..++.|++|+|++|.+..+|..+..
T Consensus 172 ~~~~~~l~L~-~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~-~~~---~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~ 245 (727)
T 4b8c_D 172 TPLTPKIELF-ANGKDEANQALLQHKKLSQYSIDEDDDIENR-M-VMP---KDSKYDDQLWHALDLSNLQIFNISANIFK 245 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGG
T ss_pred CCccceEEee-CCCCCcchhhHhhcCccCcccccCccccccc-e-ecC---hhhhccCCCCcEEECCCCCCCCCChhhcC
Confidence 3457777776 33333233222 444444444332211100 0 133 67789999999999999999999999999
Q ss_pred cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEecee
Q 035853 300 LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVL 379 (581)
Q Consensus 300 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~ 379 (581)
+++|++|+|++|.++.+|..+++|++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++++++|+.|++.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999886 889899999999999999
Q ss_pred cCC
Q 035853 380 HPS 382 (581)
Q Consensus 380 ~~~ 382 (581)
++.
T Consensus 325 ~N~ 327 (727)
T 4b8c_D 325 GNP 327 (727)
T ss_dssp TSC
T ss_pred CCc
Confidence 988
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=6.4e-13 Score=120.21 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=80.1
Q ss_pred hccCCceeEEEecCcccccCCCcccCcC-CCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhh-hcCCCCcE
Q 035853 274 CKWFKFLRLLDLGTIVLDEYPAGINPLL-LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRH 351 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~~l~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~ 351 (581)
+..+.+|+.|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4456667777777776665543 44443 677777777766665 45666777777777777666666544 66677777
Q ss_pred eecCCcccCCCCCC--ccCCCCCCcEeceecCC-Ccchhh----hCCCCCCCeEEEeeec
Q 035853 352 LNFGSITLPAHPGK--CCSSLENLNFISVLHPS-SCTQDI----LGRLPSLQTFRVHENL 404 (581)
Q Consensus 352 L~l~~~~~~~~~p~--~i~~l~~L~~L~l~~~~-~~~~~~----l~~l~~L~~L~l~~~~ 404 (581)
|++++|.+. .+|. .++.+++|+.|++.++. ...+.. +..+++|+.|+++.+.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777776664 4444 55666666666666665 333332 5566667777666664
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.3e-12 Score=118.35 Aligned_cols=122 Identities=19% Similarity=0.242 Sum_probs=95.0
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh--hhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS--LCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSI 357 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~ 357 (581)
++++++++.++.+|..+.. +|++|++++|.++.+|.. ++.+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888888877654 888888888888877753 78888888888888888776 567788888888888888
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC--CcchhhhCCCCCCCeEEEeeec
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS--SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~--~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+.+..+..++.+++|++|++.++. ...+..+..+++|+.|+++++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8876666667778888888877776 3335566777777777777764
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=1.2e-13 Score=152.94 Aligned_cols=159 Identities=16% Similarity=0.051 Sum_probs=104.8
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeE-----EEecCcccccCCCcccCcCCCcEEeccCCCCcccCh
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRL-----LDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPS 318 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~-----L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~ 318 (581)
.++++.|.+.++.... . ...+.....|+. +++..+.+...|..+..+.+|++|+|++|.+..+|.
T Consensus 172 ~~~~~~l~L~~n~~~~------~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 241 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE------A----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISA 241 (727)
T ss_dssp ------------------------------------------------------------CCCCCCEEECTTSCCSCCCG
T ss_pred CCccceEEeeCCCCCc------c----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCCh
Confidence 4567777776655432 1 122222222333 333334444556778899999999999999999999
Q ss_pred hhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCe
Q 035853 319 SLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQT 397 (581)
Q Consensus 319 ~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~ 397 (581)
.+.++++|++|+|++|.+..+|..++.+++|++|+|++|.+. .+|..++++++|+.|++.++. ..+|..++.+++|+.
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQF 320 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCC
T ss_pred hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccE
Confidence 999999999999999999999999999999999999999998 889999999999999999998 888888999999999
Q ss_pred EEEeeecccchhchhhhc
Q 035853 398 FRVHENLSSYQSMLSNNL 415 (581)
Q Consensus 398 L~l~~~~~~~~~~l~~~l 415 (581)
|++++|. .....|..+
T Consensus 321 L~L~~N~--l~~~~p~~~ 336 (727)
T 4b8c_D 321 LGVEGNP--LEKQFLKIL 336 (727)
T ss_dssp EECTTSC--CCSHHHHHH
T ss_pred EeCCCCc--cCCCChHHH
Confidence 9999997 444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=6.8e-12 Score=115.14 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=101.8
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCccc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITL 359 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 359 (581)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++|.+..++. .+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 678899999988887765 58999999999999999899999999999999998888875 478899999999999998
Q ss_pred CCCCCCccCCCCCCcEeceecCC-Ccchh-hhCCCCCCCeEEEeeec
Q 035853 360 PAHPGKCCSSLENLNFISVLHPS-SCTQD-ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 360 ~~~~p~~i~~l~~L~~L~l~~~~-~~~~~-~l~~l~~L~~L~l~~~~ 404 (581)
....|..+..+++|+.|++.++. ..++. .+..+++|+.|+++++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 86666678888899999888887 44444 46778888888888775
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.33 E-value=2.2e-12 Score=116.71 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=108.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhh-hc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSL-CN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~ 322 (581)
+++++.|.+.++....+ +......++|++|++++|.++.+ ..++.+++|++|++++|.++.+|+.+ +.
T Consensus 18 ~~~L~~L~l~~n~l~~i----------~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI----------ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp TTSCEEEECTTSCCCSC----------CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred cCCceEEEeeCCCCchh----------HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence 77889999988876431 22233344999999999999977 68999999999999999999988665 89
Q ss_pred ccCCcEEEecCCcccccch--hhhcCCCCcEeecCCcccCCCCCCc----cCCCCCCcEeceecCC
Q 035853 323 LLSLHTLDMRWSYIHHTPD--EIWKMNELRHLNFGSITLPAHPGKC----CSSLENLNFISVLHPS 382 (581)
Q Consensus 323 L~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~l~~~~ 382 (581)
+++|++|++++|.+..+|. .+..+++|++|++++|.+. ..|.. ++.+++|+.|++..+.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999999987 7899999999999999987 56664 8899999999999887
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=3.5e-12 Score=136.78 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred HHHhccCCceeEEE-ecCcccccCCC------cccC--cCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch
Q 035853 271 NAICKWFKFLRLLD-LGTIVLDEYPA------GINP--LLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD 341 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~-L~~~~l~~lp~------~i~~--l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~ 341 (581)
+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|++++|.++.+|. ++.+++|++|++++|.+..+|.
T Consensus 402 ~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~ 480 (567)
T 1dce_A 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP 480 (567)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG
T ss_pred HHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch
Confidence 45667777788887 45443322221 1111 1258889999988888886 8888999999999988888888
Q ss_pred hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-Ccc--hhhhCCCCCCCeEEEeeecccchhchhh----h
Q 035853 342 EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCT--QDILGRLPSLQTFRVHENLSSYQSMLSN----N 414 (581)
Q Consensus 342 ~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~--~~~l~~l~~L~~L~l~~~~~~~~~~l~~----~ 414 (581)
.++.+++|++|++++|.+.+ +| .++.+++|+.|+++++. ... |..++.+++|+.|++++|. . ...|. .
T Consensus 481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~--l-~~~~~~~~~l 555 (567)
T 1dce_A 481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS--L-CQEEGIQERL 555 (567)
T ss_dssp GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG--G-GGSSSCTTHH
T ss_pred hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc--C-CCCccHHHHH
Confidence 88889999999999988874 66 78888999999988888 444 7888889999999998885 2 22222 2
Q ss_pred cCCCCCCCEEEe
Q 035853 415 LCPLLHLESLKL 426 (581)
Q Consensus 415 l~~~~~L~~L~l 426 (581)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 233677887753
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=1.7e-11 Score=122.74 Aligned_cols=284 Identities=12% Similarity=0.033 Sum_probs=177.9
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhcc-CCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhc
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKW-FKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCN 322 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~ 322 (581)
..+++.|.+.+.-... . ...+.. +++|++|||+++.+......-+.++.++++.+..+.+. +..+.+
T Consensus 24 ~~~l~~L~l~g~i~~~------~----~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~ 91 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAE------D----FRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSN 91 (329)
T ss_dssp HHHCSEEEEEEEECHH------H----HHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC--TTTTEE
T ss_pred hCceeEEEEeccccHH------H----HHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccC--HHHhcc
Confidence 5678888888753311 1 234444 88999999999998722111223333566666555332 134556
Q ss_pred --------ccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC------Ccchh
Q 035853 323 --------LLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS------SCTQD 387 (581)
Q Consensus 323 --------L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~------~~~~~ 387 (581)
+.+|+.|++.. .+..++.. +..+++|+.+++..|.+....+..+..+.++..+...... .....
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999988 78888765 6789999999999887764455567776667666543311 11111
Q ss_pred hhCCCCCCC-eEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC-CCCCCCCccEEEEeeccCCCCCc
Q 035853 388 ILGRLPSLQ-TFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP-EYQFPPRLIELSLSNTELKYDPM 465 (581)
Q Consensus 388 ~l~~l~~L~-~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp-~~~~l~~L~~L~L~~~~l~~~~~ 465 (581)
.+..+.+|+ .+.+.... .....+...-....++..+.+.+.-. . ..+. ....+++|+.++|.+|.++.-..
T Consensus 171 ~f~~~~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l~----~--~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKLD----N--ADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp CEEESCCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECCC----H--HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred ccccccccceeEEecCCC-cHHHHHhhcccCccccceEEEeeeec----H--HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 233455555 34444332 11111112222345666666665100 0 0000 01137889999999887766566
Q ss_pred ccccCCCCCCeEEEecCcccCceeeeCCCCCCCCc-EEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcc-ccc
Q 035853 466 PALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLK-VMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPE-ELW 542 (581)
Q Consensus 466 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~ 542 (581)
..|.+|++|+.+.+.++ + .......+.++++|+ .+.+.+ .++.++ ..+..|++|+.|++.++. +..++. .+.
T Consensus 244 ~aF~~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~ 318 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFG 318 (329)
T ss_dssp TTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTC
T ss_pred hhhhCCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhc
Confidence 67889999999999865 2 233345677888998 999987 577775 567889999999998765 666654 688
Q ss_pred CCCCccEEEe
Q 035853 543 RIKSLTKLEL 552 (581)
Q Consensus 543 ~l~~L~~L~l 552 (581)
++++|+.|+.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 8999998864
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=7.6e-14 Score=128.99 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=60.4
Q ss_pred cccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcE
Q 035853 296 GINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNF 375 (581)
Q Consensus 296 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 375 (581)
.++.+++|++|++++|.++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|.+.+ +| .++.+++|+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence 5555566666666666555555 5555666666666666555555555555566666666655542 33 3455555555
Q ss_pred eceecCC-Ccch--hhhCCCCCCCeEEEeeec
Q 035853 376 ISVLHPS-SCTQ--DILGRLPSLQTFRVHENL 404 (581)
Q Consensus 376 L~l~~~~-~~~~--~~l~~l~~L~~L~l~~~~ 404 (581)
|++.++. ...+ ..+..+++|+.|++++|.
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 5555554 2222 356666667777776664
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.23 E-value=3.7e-13 Score=124.29 Aligned_cols=126 Identities=19% Similarity=0.218 Sum_probs=107.5
Q ss_pred HHHhccCCceeEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCc
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELR 350 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~ 350 (581)
+..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+..+++|+
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 458889999999999999999888 899999999999999999999988888999999999999998888 588999999
Q ss_pred EeecCCcccCCCCC--CccCCCCCCcEeceecCC-Ccc-hh----------hhCCCCCCCeEE
Q 035853 351 HLNFGSITLPAHPG--KCCSSLENLNFISVLHPS-SCT-QD----------ILGRLPSLQTFR 399 (581)
Q Consensus 351 ~L~l~~~~~~~~~p--~~i~~l~~L~~L~l~~~~-~~~-~~----------~l~~l~~L~~L~ 399 (581)
+|++++|.+.. ++ ..+..+++|+.|++.++. ... +. .+..+++|+.|+
T Consensus 119 ~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999998873 33 368899999999999887 222 21 266778888776
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=2.9e-11 Score=110.93 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=91.2
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchh--hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDE--IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
-++++++++.++.+|..+.. +|++|++++|.+..+|.. ++.+++|++|++++|.+.+..|..++.+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 38999999999999987754 999999999999888864 88999999999999999877788888888888888888
Q ss_pred CC-Ccch-hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeec
Q 035853 381 PS-SCTQ-DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVD 428 (581)
Q Consensus 381 ~~-~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~ 428 (581)
+. ...+ ..+..+++|+.|+++++. .....|..+..+++|+.|++++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ--ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC--CCEECTTSSTTCTTCCEEECTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc--CCeeCHHHhhcCCCCCEEEeCC
Confidence 77 3333 336677777777777775 3333344444444444444433
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=9e-11 Score=107.60 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=82.6
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
-++++++++.++.+|..+. ++|++|++++|.+..+|..+..+++|++|++++|.+....+..+.++++|++|+++++.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3689999999999997764 69999999999999999999999999999999999986666678888888888888877
Q ss_pred -Ccc-hhhhCCCCCCCeEEEeeec
Q 035853 383 -SCT-QDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 383 -~~~-~~~l~~l~~L~~L~l~~~~ 404 (581)
..+ +..+..+++|+.|+++++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~ 113 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND 113 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC
Confidence 333 3356677777777777764
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.5e-10 Score=104.51 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=79.2
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 566777777766665443 5777777777777766543 46677777777777777666654 4667777777777777
Q ss_pred cCCCCCCccCCCCCCcEeceecCC-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
+.+..+..++.+++|+.|++.++. ..++.. +..+++|+.|+++++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 664444445667777777776666 433333 4556677777776664
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2e-10 Score=103.77 Aligned_cols=105 Identities=21% Similarity=0.262 Sum_probs=72.9
Q ss_pred CceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCCcccccchh-hhcCCCCcEeec
Q 035853 278 KFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNF 354 (581)
Q Consensus 278 ~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 354 (581)
++|+.|+++++.++.+|. .++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 567777777777775554 356777777777777777766644 56777777777777777776654 466777777777
Q ss_pred CCcccCCCCCCccCCCCCCcEeceecCC
Q 035853 355 GSITLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 355 ~~~~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
++|.+.+..+..+..+++|+.|++.++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7777764333335667777777777765
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=3.3e-10 Score=101.96 Aligned_cols=100 Identities=24% Similarity=0.342 Sum_probs=85.1
Q ss_pred eEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCcc
Q 035853 281 RLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSIT 358 (581)
Q Consensus 281 r~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~ 358 (581)
+.++++++.++.+|..+. .+|++|++++|.++.+ |..++++++|++|+|++|.+..+|..+ ..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 788999999999998775 7999999999999977 567889999999999999999998764 789999999999998
Q ss_pred cCCCCCCccCCCCCCcEeceecCC
Q 035853 359 LPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 359 ~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
+....+..+..+++|+.|++.++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 875444448888888888888876
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=2.7e-10 Score=102.10 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=85.9
Q ss_pred eeEEEecCcccccCCCcccCcCCCcEEeccCCCCccc-ChhhhcccCCcEEEecCCcccccchhh-hcCCCCcEeecCCc
Q 035853 280 LRLLDLGTIVLDEYPAGINPLLLLKYLVLNIPSLKHL-PSSLCNLLSLHTLDMRWSYIHHTPDEI-WKMNELRHLNFGSI 357 (581)
Q Consensus 280 Lr~L~L~~~~l~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~ 357 (581)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++++++|++|++++|.+..+|... ..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4789999999999998775 7899999999999977 566899999999999999998988764 78999999999999
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+.+..+..+..+++|+.|++.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 9885555558888888888888775
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=8.3e-10 Score=110.35 Aligned_cols=278 Identities=12% Similarity=0.024 Sum_probs=174.9
Q ss_pred CCeeEEEEEecccCCCccccc---CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccC
Q 035853 223 EDFKRISVCRTVTNFDSWEHF---DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINP 299 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~ 299 (581)
..+.++.+. +.....-...+ .++|+.|.+.++...... .....++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~-g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~----------~~~~~~~~~~~~~~~~~~I~--~~aF~~ 91 (329)
T 3sb4_A 25 NSITHLTLT-GKLNAEDFRHLRDEFPSLKVLDISNAEIKMYS----------GKAGTYPNGKFYIYMANFVP--AYAFSN 91 (329)
T ss_dssp HHCSEEEEE-EEECHHHHHHHHHSCTTCCEEEEEEEEECCEE----------ESSSSSGGGCCEEECTTEEC--TTTTEE
T ss_pred CceeEEEEe-ccccHHHHHHHHHhhccCeEEecCcceeEEec----------CccccccccccccccccccC--HHHhcc
Confidence 356777777 43221111112 678999999988764100 00112222455555555332 133556
Q ss_pred --------cCCCcEEeccCCCCcccCh-hhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCccc----CCCCCC
Q 035853 300 --------LLLLKYLVLNIPSLKHLPS-SLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITL----PAHPGK 365 (581)
Q Consensus 300 --------l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~----~~~~p~ 365 (581)
+.+|+.|++.. .++.+++ .+..|.+|+.+++..+.+..++.. +..+.++..+....... ...-..
T Consensus 92 ~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 92 VVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 89999999988 8887774 588899999999999877777654 45566777775544221 111122
Q ss_pred ccCCCCCCc-EeceecCC---CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-c
Q 035853 366 CCSSLENLN-FISVLHPS---SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-V 440 (581)
Q Consensus 366 ~i~~l~~L~-~L~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~ 440 (581)
.+.++.+|+ .+.+.... ......-....++..+.+.+.- ...........+++|+.++++.+. + .
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~l~~~~~~L~~l~L~~n~--------i~~ 240 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL--DNADFKLIRDYMPNLVSLDISKTN--------ATT 240 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC--CHHHHHHHHHHCTTCCEEECTTBC--------CCE
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee--cHHHHHHHHHhcCCCeEEECCCCC--------cce
Confidence 344555666 33332222 1111112245677888887764 222222222347899999999755 6 7
Q ss_pred CC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCC-eEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-C
Q 035853 441 LP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLR-VLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-E 516 (581)
Q Consensus 441 lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 516 (581)
+| .+..|++|+.|++.++ +..-....|.++++|+ .+.+.+ .+. ......+.++++|+.+++.++ .++.++. .
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~a 316 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGD-KITTLGDEL 316 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCC-ccCccchhh
Confidence 87 6889999999999987 5555556789999999 999985 332 222456788999999999775 6777765 5
Q ss_pred cccccccceEee
Q 035853 517 NDAMPKLESLII 528 (581)
Q Consensus 517 ~~~l~~L~~L~l 528 (581)
+..+++|+.|+.
T Consensus 317 F~~~~~L~~ly~ 328 (329)
T 3sb4_A 317 FGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCCCEEEC
T ss_pred hcCCcchhhhcc
Confidence 788999998864
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=1.5e-08 Score=103.69 Aligned_cols=240 Identities=11% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHhccCCceeEEEecCcccccCCC-cccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCC
Q 035853 272 AICKWFKFLRLLDLGTIVLDEYPA-GINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNEL 349 (581)
Q Consensus 272 ~~~~~~~~Lr~L~L~~~~l~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L 349 (581)
..|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++..+.+..+|.......+|
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 344443 4666665544 443332 2333 2466666654 444443 34556666666666666666666554445566
Q ss_pred cEeecCCcccCCCCCCccCCCCCCcEeceecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecC
Q 035853 350 RHLNFGSITLPAHPGKCCSSLENLNFISVLHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDE 429 (581)
Q Consensus 350 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~ 429 (581)
+.+.+..+ +...-.. .+.++++|+.+.+..+ ....-...+.. .+|+.+.+..
T Consensus 206 ~~l~lp~~-l~~I~~~----------------------aF~~~~~L~~l~l~~~---l~~I~~~aF~~-~~L~~i~lp~- 257 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQ----------------------AFLKTSQLKTIEIPEN---VSTIGQEAFRE-SGITTVKLPN- 257 (401)
T ss_dssp SEEECCTT-CCEECTT----------------------TTTTCTTCCCEECCTT---CCEECTTTTTT-CCCSEEEEET-
T ss_pred CEEEeCCc-hheehhh----------------------HhhCCCCCCEEecCCC---ccCcccccccc-CCccEEEeCC-
Confidence 66655422 2111112 2344455555554432 11111223333 4677776643
Q ss_pred CcccCCcccc-cCC--CCCCCCCccEEEEeeccCC-----CCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcE
Q 035853 430 RTIALQPSSI-VLP--EYQFPPRLIELSLSNTELK-----YDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKV 501 (581)
Q Consensus 430 ~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~ 501 (581)
. + .++ .+..|++|+.+.+.++... .-....+.+|++|+.+.+. +.+. ..-...+.++++|+.
T Consensus 258 ~--------i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 258 G--------VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQ 327 (401)
T ss_dssp T--------CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCE
T ss_pred C--------ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccE
Confidence 1 3 454 5777888888888877543 1233467889999999997 3332 222345677899999
Q ss_pred EEecCCCcccccc-cCcccccccceEeeccCcCCCCCcccccCCC-CccEEEeeCCC
Q 035853 502 MHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPEELWRIK-SLTKLELWWPR 556 (581)
Q Consensus 502 L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~-~L~~L~l~~c~ 556 (581)
+.|.. +++.+. ..+..+ +|+.+.+.++....-.+..+..++ +++.|.+-...
T Consensus 328 l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 328 LTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 99965 466664 346777 999999999853332233455664 78889886544
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=2.3e-08 Score=102.33 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=116.3
Q ss_pred ccCCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC-
Q 035853 366 CCSSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP- 442 (581)
Q Consensus 366 ~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp- 442 (581)
.+.++++|+.+.+..+. ..++.....+.+|+.+.+... ....-...+..+.+|+.+.+.. + + .++
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~---l~~I~~~aF~~~~~L~~l~l~~-~--------l~~I~~ 242 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT---LKEIGSQAFLKTSQLKTIEIPE-N--------VSTIGQ 242 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCCEECCT-T--------CCEECT
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc---hheehhhHhhCCCCCCEEecCC-C--------ccCccc
Confidence 34455555555554433 333333223566777776533 2333345688899999999975 1 4 555
Q ss_pred -CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccC----ceeeeCCCCCCCCcEEEecCCCccccccc-C
Q 035853 443 -EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFG----RKLVCSSGGFPSLKVMHLKSMFWLEEWTM-E 516 (581)
Q Consensus 443 -~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~ 516 (581)
.+.. .+|+.+.+.++ ++.-....+.+|++|+.+.+.++.... ......+.++++|+.+.+.+ .++.++. .
T Consensus 243 ~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a 318 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL 318 (401)
T ss_dssp TTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred ccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh
Confidence 4555 78999999543 444445678999999999998765431 12244578899999999985 4777754 4
Q ss_pred cccccccceEeeccCcCCCCCcc-cccCCCCccEEEeeCCC
Q 035853 517 NDAMPKLESLIINPCAYLKILPE-ELWRIKSLTKLELWWPR 556 (581)
Q Consensus 517 ~~~l~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~c~ 556 (581)
+..|++|+.+.|..+ +..++. .+.++ +|++|.+.++.
T Consensus 319 F~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred hcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 778899999999654 666653 67888 99999998764
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=4.6e-09 Score=94.01 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=84.7
Q ss_pred CCcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..+.++++++.++.+|..+ ..+|++|++++|.+..+ |..+..+++|++|++++|.+....+..+..+++|+.|++.+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4688999999999999877 48999999999999888 55688999999999999999855555578899999999988
Q ss_pred CC-Ccchh-hhCCCCCCCeEEEeeec
Q 035853 381 PS-SCTQD-ILGRLPSLQTFRVHENL 404 (581)
Q Consensus 381 ~~-~~~~~-~l~~l~~L~~L~l~~~~ 404 (581)
+. ..++. .+..+++|+.|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88 55544 47788888888888885
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=5e-09 Score=94.12 Aligned_cols=100 Identities=18% Similarity=0.166 Sum_probs=83.2
Q ss_pred CcEEeccCCCCcccChhhhcccCCcEEEecCCccccc-chhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecC
Q 035853 303 LKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHT-PDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHP 381 (581)
Q Consensus 303 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~ 381 (581)
-+.++++++.++.+|..+. .+|++|++++|.+..+ |..+..+++|++|++++|.+.+..+..++++++|+.|++.++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998775 8999999999999888 456889999999999999988544444688999999999888
Q ss_pred C-Ccchhh-hCCCCCCCeEEEeeec
Q 035853 382 S-SCTQDI-LGRLPSLQTFRVHENL 404 (581)
Q Consensus 382 ~-~~~~~~-l~~l~~L~~L~l~~~~ 404 (581)
. ..++.. +..+++|+.|+++++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 8 555554 7788888888888875
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.72 E-value=3.1e-08 Score=99.62 Aligned_cols=99 Identities=20% Similarity=0.119 Sum_probs=68.0
Q ss_pred EEEecCc-ccccCCCcccCcCCCcEEeccC-CCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCc
Q 035853 282 LLDLGTI-VLDEYPAGINPLLLLKYLVLNI-PSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSI 357 (581)
Q Consensus 282 ~L~L~~~-~l~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 357 (581)
.++++++ .++.+|. ++.+.+|++|+|++ |.+..+| ..+++|.+|++|+|++|.+..+|. .+..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3467776 6777777 77777778888875 7777666 457777778888887777766654 4577777888888777
Q ss_pred ccCCCCCCccCCCCCCcEeceecCC
Q 035853 358 TLPAHPGKCCSSLENLNFISVLHPS 382 (581)
Q Consensus 358 ~~~~~~p~~i~~l~~L~~L~l~~~~ 382 (581)
.+.+..+..+..++ |+.|++.++.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCC
Confidence 77633333333333 7777776665
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=1.3e-09 Score=110.44 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=84.0
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhc-cCCceeEEEecCcccc-c-CCCcccCcCCCcEEeccCCCCccc----
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICK-WFKFLRLLDLGTIVLD-E-YPAGINPLLLLKYLVLNIPSLKHL---- 316 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~Lr~L~L~~~~l~-~-lp~~i~~l~~Lr~L~L~~~~i~~l---- 316 (581)
.++++.|.+.++...... + ..+ ...+. ..++|+.|+|++|.++ . ...-...+.+|++|+|++|.++..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~-~~l---~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-C-TVV---AAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-H-HHH---HHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HhhCCEEEecCCCCCHHH-H-HHH---HHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 456667777666543200 0 111 22222 2357777777777765 1 222223455777777777776521
Q ss_pred -Chhh-hcccCCcEEEecCCcccc-----cchhhhcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC-C-
Q 035853 317 -PSSL-CNLLSLHTLDMRWSYIHH-----TPDEIWKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS-S- 383 (581)
Q Consensus 317 -p~~i-~~L~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~-~- 383 (581)
...+ ...++|++|+|++|.+.. ++..+..+++|++|++++|.+.. .++..+...++|++|++++|. .
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 1222 235667777777776543 44455667777777777776542 122334445566666666655 1
Q ss_pred ----cchhhhCCCCCCCeEEEeeec
Q 035853 384 ----CTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 384 ----~~~~~l~~l~~L~~L~l~~~~ 404 (581)
.+...+...++|+.|++++|.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 233334445556666666654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=7.2e-09 Score=104.25 Aligned_cols=110 Identities=22% Similarity=0.269 Sum_probs=59.9
Q ss_pred CCCccEEEEeeccCCCCCccccc--CCCCCCeEEEecC--cccCce-e-----eeCCCCCCCCcEEEecCCCccccccc-
Q 035853 447 PPRLIELSLSNTELKYDPMPALE--KLPHLRVLKLKKN--SFFGRK-L-----VCSSGGFPSLKVMHLKSMFWLEEWTM- 515 (581)
Q Consensus 447 l~~L~~L~L~~~~l~~~~~~~l~--~l~~L~~L~L~~~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~~~l~~l~~- 515 (581)
+++|++|+|..|.+.......++ .+|+|+.|+|+.+ ...+.. + ......||+|+.|.+.+|......+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 56677777776665444444443 5777777777521 111110 0 11123577777777777643221111
Q ss_pred --CcccccccceEeeccCcCCC----CCcccccCCCCccEEEeeCCC
Q 035853 516 --ENDAMPKLESLIINPCAYLK----ILPEELWRIKSLTKLELWWPR 556 (581)
Q Consensus 516 --~~~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~c~ 556 (581)
....+|+|++|+++.|.... .++.++.++++|+.|++++|+
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 12357777777777664222 244455567777777777775
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=1.1e-09 Score=111.10 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=72.8
Q ss_pred CCceeEEEecCccccc-----CCCccc-CcCCCcEEeccCCCCcc--cChhhhcccCCcEEEecCCcccccc-----hhh
Q 035853 277 FKFLRLLDLGTIVLDE-----YPAGIN-PLLLLKYLVLNIPSLKH--LPSSLCNLLSLHTLDMRWSYIHHTP-----DEI 343 (581)
Q Consensus 277 ~~~Lr~L~L~~~~l~~-----lp~~i~-~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~lp-----~~i 343 (581)
+++|+.|++++|.++. +...+. ...+|++|+|++|.+.. +..-...+.+|+.|+|++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678899999988762 222222 23688899999888762 2222345678888888888764432 222
Q ss_pred -hcCCCCcEeecCCcccCC----CCCCccCCCCCCcEeceecCC------CcchhhhCCCCCCCeEEEeeec
Q 035853 344 -WKMNELRHLNFGSITLPA----HPGKCCSSLENLNFISVLHPS------SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 344 -~~l~~L~~L~l~~~~~~~----~~p~~i~~l~~L~~L~l~~~~------~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
...++|+.|++++|.+.. .++..+...++|++|++++|. ..+...+...++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 235678888888776642 122223344555555555554 1123333444445555555443
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.60 E-value=1.6e-06 Score=88.58 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=152.3
Q ss_pred CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcc-------
Q 035853 244 DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKH------- 315 (581)
Q Consensus 244 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~------- 315 (581)
+.+|+++.+...-. ... ...|.+|.+|+.+++..+ ++.++ ..+..+..|+.+.+..+ +..
T Consensus 70 c~~L~~i~lp~~i~-------~I~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 70 CRKVTEIKIPSTVR-------EIG---EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp CTTEEEEECCTTCC-------EEC---TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred CCCceEEEeCCCcc-------Ccc---hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeee
Confidence 67777777754321 122 467778888888887644 44333 33555666665554332 111
Q ss_pred ---------------c-ChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCcccCCCCCCccCCCCCCcEece
Q 035853 316 ---------------L-PSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISV 378 (581)
Q Consensus 316 ---------------l-p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l 378 (581)
+ ...+.++.+|+.+.+..+ +..++.. +..+.+|+.+++..+ +.......+.++..|+.+.+
T Consensus 138 ~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 138 GCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 1 123455666666666543 3334332 445666666655443 11112233455566666554
Q ss_pred ecCCCcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccccCC--CCCCCCCccEEEEe
Q 035853 379 LHPSSCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSIVLP--EYQFPPRLIELSLS 456 (581)
Q Consensus 379 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l~lp--~~~~l~~L~~L~L~ 456 (581)
......+........+|+.+.+... ....-...+..+.+|+.+.+..+- ..++ .+..++.++.+...
T Consensus 216 ~~~~~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~--------~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 216 PNSLYYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNK--------LRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CTTCCEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTT--------CEECSCTTTTCTTCCEEEEC
T ss_pred CCCceEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCCCc--------ceeeccccccccccceeccC
Confidence 4333222223334456666666433 111222345566677777765411 1333 45667777777665
Q ss_pred eccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCC
Q 035853 457 NTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLK 535 (581)
Q Consensus 457 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~ 535 (581)
...+. ...+..+.+|+.+.+.++ +. ..-...+.++.+|+.+.+.. .++.+. ..+..|++|+.+.+..+ ++
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CC
T ss_pred ceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--cc
Confidence 54321 234667788888888632 21 11123456677888888864 366664 34667888888888654 55
Q ss_pred CCcc-cccCCCCccEEEeeCC
Q 035853 536 ILPE-ELWRIKSLTKLELWWP 555 (581)
Q Consensus 536 ~lp~-~l~~l~~L~~L~l~~c 555 (581)
.++. .+.+|++|+++++...
T Consensus 356 ~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 356 KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTTTBTTCTTCCEEEEEGG
T ss_pred EehHHHhhCCCCCCEEEECCC
Confidence 5543 5778888888888654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=1.2e-07 Score=95.32 Aligned_cols=100 Identities=17% Similarity=0.059 Sum_probs=85.7
Q ss_pred cEEeccCC-CCcccChhhhcccCCcEEEecC-Ccccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 304 KYLVLNIP-SLKHLPSSLCNLLSLHTLDMRW-SYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 304 r~L~L~~~-~i~~lp~~i~~L~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
..++++++ .++.+|. +..+.+|++|+|++ |.+..+|. .++.+++|++|+|++|.+.+..|..|+++++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 8999999 99999999999996 89999884 588999999999999999877777889999999999999
Q ss_pred CC-CcchhhhCCCCCCCeEEEeeec
Q 035853 381 PS-SCTQDILGRLPSLQTFRVHENL 404 (581)
Q Consensus 381 ~~-~~~~~~l~~l~~L~~L~l~~~~ 404 (581)
+. ..++..+.....|+.|++.++.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 98 6666554433349999999886
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=1.4e-06 Score=89.05 Aligned_cols=293 Identities=12% Similarity=0.053 Sum_probs=182.4
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCc------------
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTI------------ 288 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~------------ 288 (581)
.+++.+.+. +.....-...+ +++|+++.+.++-. ... ...|..+..|+.+.+..+
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~l~-------~I~---~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~ 139 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDSVK-------MIG---RCTFSGCYALKSILLPLMLKSIGVEAFKGC 139 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTTCC-------EEC---TTTTTTCTTCCCCCCCTTCCEECTTTTTTC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCCce-------Ecc---chhhcccccchhhcccCceeeecceeeecc
Confidence 455666655 43322112233 67888887754321 122 355666666655544321
Q ss_pred c---------cccC-CCcccCcCCCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCC
Q 035853 289 V---------LDEY-PAGINPLLLLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGS 356 (581)
Q Consensus 289 ~---------l~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~ 356 (581)
. ...+ ...+.++.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++. .+..+..|+.+.+..
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 1 1111 234677889999999764 34444 45778899999988765 555554 356788888887665
Q ss_pred cccCCCCCCccCCCCCCcEeceecCCCc-chhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCC
Q 035853 357 ITLPAHPGKCCSSLENLNFISVLHPSSC-TQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQ 435 (581)
Q Consensus 357 ~~~~~~~p~~i~~l~~L~~L~l~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~ 435 (581)
+.. .+........+|+.+.+...... ....+..+.+|+.+.+... ........+..+..++.+....
T Consensus 218 ~~~--~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~---~~~i~~~~F~~~~~l~~~~~~~------- 285 (394)
T 4fs7_A 218 SLY--YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNN---KLRIGGSLFYNCSGLKKVIYGS------- 285 (394)
T ss_dssp TCC--EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCT---TCEECSCTTTTCTTCCEEEECS-------
T ss_pred Cce--EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCC---cceeeccccccccccceeccCc-------
Confidence 433 22333344567777776443322 2234567888998888765 2333345566777888776654
Q ss_pred cccccCC--CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccc
Q 035853 436 PSSIVLP--EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEW 513 (581)
Q Consensus 436 ~l~l~lp--~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 513 (581)
..+| .+..+.+|+.+.+..+ ++.-....+.++.+|+.+.+..+ +. ..-...+.++.+|+.+.+.. +++.+
T Consensus 286 ---~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 286 ---VIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPL--SLRKI 357 (394)
T ss_dssp ---SEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCT--TCCEE
T ss_pred ---eeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECc--cccEe
Confidence 2334 4677899999998764 33333456888999999999632 21 22234567788999999875 36666
Q ss_pred c-cCcccccccceEeeccCcCCCCCcccccCCCCccEE
Q 035853 514 T-MENDAMPKLESLIINPCAYLKILPEELWRIKSLTKL 550 (581)
Q Consensus 514 ~-~~~~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 550 (581)
. ..+..|++|+.+++..+ ++.+...+.++++|+.+
T Consensus 358 ~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 GANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred hHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 4 35778999999999754 45555678888888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=2.9e-08 Score=99.83 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=9.3
Q ss_pred hccCCceeEEEecCc
Q 035853 274 CKWFKFLRLLDLGTI 288 (581)
Q Consensus 274 ~~~~~~Lr~L~L~~~ 288 (581)
..++++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 445667777766543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=4.9e-07 Score=79.99 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=50.7
Q ss_pred CCccEEEEeeccCCCCCcccccCCCCCCeEEEecCc-ccCceeeeCCCC----CCCCcEEEecCCCcccccc-cCccccc
Q 035853 448 PRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNS-FFGRKLVCSSGG----FPSLKVMHLKSMFWLEEWT-MENDAMP 521 (581)
Q Consensus 448 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~l~-~~~~~l~ 521 (581)
.+|+.|++++|.++...+..+.++++|+.|+|++|. +++..+.. +.. .++|++|+|++|+.+++-- ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467888888877766666667777777777777764 33332211 111 2356666666665555321 1134466
Q ss_pred ccceEeeccCcCCCC
Q 035853 522 KLESLIINPCAYLKI 536 (581)
Q Consensus 522 ~L~~L~l~~c~~l~~ 536 (581)
+|++|++++|+.++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 666666666665543
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=0.00011 Score=74.79 Aligned_cols=282 Identities=11% Similarity=0.026 Sum_probs=156.5
Q ss_pred cccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcc---cccCC-CcccCcCCCcEEeccCCCCcccC-hhh
Q 035853 246 YLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIV---LDEYP-AGINPLLLLKYLVLNIPSLKHLP-SSL 320 (581)
Q Consensus 246 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~---l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i 320 (581)
.|+++.+-..-. ... ...|.++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++ ..+
T Consensus 65 ~L~sI~iP~svt-------~Ig---~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 65 VLTSVQIPDTVT-------EIG---SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp CCCEEEECTTCC-------EEC---TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred cCEEEEECCCee-------EEh---HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 477777754322 122 5778888888888887653 44443 34667778887776653 44444 345
Q ss_pred hcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceecCC-CcchhhhCCCCCCCeE
Q 035853 321 CNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLHPS-SCTQDILGRLPSLQTF 398 (581)
Q Consensus 321 ~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L 398 (581)
..+.+|+.+.+... +..++. .+..+.+|+.+.+..+-. .+....-...+|+.+.+.... ......+..+.++...
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~--~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT--AIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTI 210 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccceee--EeccccccccceeEEEECCcccccccchhhhcccccee
Confidence 67788888887653 444443 345677777776654321 222221123456666544332 2222334455566655
Q ss_pred EEeeecccchhc-h----------hhhcCCCCCCCEEEeecCCcccCCcccc-cCC--CCCCCCCccEEEEeeccCCCCC
Q 035853 399 RVHENLSSYQSM-L----------SNNLCPLLHLESLKLVDERTIALQPSSI-VLP--EYQFPPRLIELSLSNTELKYDP 464 (581)
Q Consensus 399 ~l~~~~~~~~~~-l----------~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~~~~l~~L~~L~L~~~~l~~~~ 464 (581)
............ + .........+..+.+.. + + .+. .+..+.+|+.+.+.... ..-.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~--------v~~i~~~aF~~c~~L~~i~lp~~~-~~I~ 280 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-G--------VARIETHAFDSCAYLASVKMPDSV-VSIG 280 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-T--------EEEECTTTTTTCSSCCEEECCTTC-CEEC
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC-c--------ceEcccceeeecccccEEeccccc-ceec
Confidence 444322000000 0 00001111222222221 0 2 222 36677888888876542 2222
Q ss_pred cccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCcccccccceEeeccCcCCCCCcc-ccc
Q 035853 465 MPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMPKLESLIINPCAYLKILPE-ELW 542 (581)
Q Consensus 465 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~l~ 542 (581)
...+.++++|+.+.+. +.+. ......+.++.+|+.+.|.. +++.+. ..+..|.+|+.+.|-.. ++.++. .+.
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~ 354 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFS 354 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGT
T ss_pred CcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhh
Confidence 3456778888888885 2221 22233466778888888865 466664 34677888998888643 566654 578
Q ss_pred CCCCccEEEeeCCCH
Q 035853 543 RIKSLTKLELWWPRF 557 (581)
Q Consensus 543 ~l~~L~~L~l~~c~~ 557 (581)
+|++|+.+++.++..
T Consensus 355 ~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 355 NCTALNNIEYSGSRS 369 (394)
T ss_dssp TCTTCCEEEESSCHH
T ss_pred CCCCCCEEEECCcee
Confidence 888999998888763
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=4.5e-05 Score=77.78 Aligned_cols=300 Identities=11% Similarity=0.060 Sum_probs=174.7
Q ss_pred eeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCC-CcccCcC
Q 035853 225 FKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYP-AGINPLL 301 (581)
Q Consensus 225 ~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~ 301 (581)
+..+.+. +.....-...+ +++|+++.+..+....+. ... ...|..+.+|+.+.+..+ ++.++ ..+..+.
T Consensus 66 L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~---~Ig---~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 66 LTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVK---KIG---RQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp CCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCCCC---EEC---TTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred CEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCeee---Eec---hhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 5666665 44333222334 789999998765322111 122 467888888887776544 44333 4567888
Q ss_pred CCcEEeccCCCCcccC-hhhhcccCCcEEEecCCcccccchhhhcCCCCcEeecCCcccCCCCCCccCCCCCCcEeceec
Q 035853 302 LLKYLVLNIPSLKHLP-SSLCNLLSLHTLDMRWSYIHHTPDEIWKMNELRHLNFGSITLPAHPGKCCSSLENLNFISVLH 380 (581)
Q Consensus 302 ~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~l~~ 380 (581)
+|+.+.+..+ +..++ ..+..+..|+.+.+..+ +..+........+|+.+.+..+... .....+..+.++.......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccccceecccc
Confidence 9999999754 34333 45678889999988764 5555554444567888876543221 2223455666666655333
Q ss_pred CC-Ccch--------------hhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--
Q 035853 381 PS-SCTQ--------------DILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP-- 442 (581)
Q Consensus 381 ~~-~~~~--------------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp-- 442 (581)
.. .... ........+..+.+... ....-...+..+.+|+.+.+... + .+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~---------~~~I~~~ 282 (394)
T 4gt6_A 215 ESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDS---------VVSIGTG 282 (394)
T ss_dssp SSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTT---------CCEECTT
T ss_pred cccccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecccc---------cceecCc
Confidence 22 0000 00111122233322211 12222346778888998888651 2 444
Q ss_pred CCCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCcccccc-cCccccc
Q 035853 443 EYQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWT-MENDAMP 521 (581)
Q Consensus 443 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~ 521 (581)
.+..+++|+.+.+... ++.-....+.+|.+|+.+.|..+ +. ..-...+.++.+|+.+.|.. +++.+. ..+..|+
T Consensus 283 aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCT
T ss_pred ccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCC
Confidence 5678899999988643 33333456888999999999743 21 12233577889999999965 466664 3577899
Q ss_pred ccceEeeccCcCCCCCcccccCCCCccEEEeeCC
Q 035853 522 KLESLIINPCAYLKILPEELWRIKSLTKLELWWP 555 (581)
Q Consensus 522 ~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~c 555 (581)
+|+.+++.++... . ..+..+.+|+.+.+...
T Consensus 358 ~L~~i~~~~~~~~--~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSRSQ--W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCHHH--H-HTCBCCCCC--------
T ss_pred CCCEEEECCceee--h-hhhhccCCCCEEEeCCC
Confidence 9999999886422 1 34566788888877544
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=8.1e-07 Score=80.39 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=58.3
Q ss_pred HHHhccCCceeEEEecCc-ccc-----cCCCcccCcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcccc-
Q 035853 271 NAICKWFKFLRLLDLGTI-VLD-----EYPAGINPLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYIHH- 338 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~-~l~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l~~- 338 (581)
...+...+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 456677777888888877 654 23344555677777777777765 244455566777777777776543
Q ss_pred ----cchhhhcCCCCcEeec--CCcccC
Q 035853 339 ----TPDEIWKMNELRHLNF--GSITLP 360 (581)
Q Consensus 339 ----lp~~i~~l~~L~~L~l--~~~~~~ 360 (581)
+...+...++|++|++ ++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 4455556666777777 555543
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=4e-06 Score=75.74 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=85.5
Q ss_pred CCcccEEEEecc-cccccccchhhhhhhHHHhccCCceeEEEecCcccc-----cCCCcccCcCCCcEEeccCCCCc---
Q 035853 244 DTYLHSFLHLTV-ERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLD-----EYPAGINPLLLLKYLVLNIPSLK--- 314 (581)
Q Consensus 244 ~~~Lr~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~-----~lp~~i~~l~~Lr~L~L~~~~i~--- 314 (581)
.+.+++|.+.++ .... ... ..+ ...+...+.|++|+|++|.+. .+...+...+.|++|+|++|.|.
T Consensus 35 ~~~L~~L~L~~n~~i~~-~g~-~~l---~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPV-PTL-KAC---AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCH-HHH-HHH---HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCCCCH-HHH-HHH---HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 678899999887 5532 111 223 566778899999999999986 24455666789999999999987
Q ss_pred --ccChhhhcccCCcEEEe--cCCcccc-----cchhhhcCCCCcEeecCCcccC
Q 035853 315 --HLPSSLCNLLSLHTLDM--RWSYIHH-----TPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 315 --~lp~~i~~L~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
.+...+...+.|++|++ ++|.+.. +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 36677888899999999 7787743 5566677899999999988763
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=4.6e-06 Score=73.73 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Cccc----ccccceEeeccCcCCCC--CcccccCC
Q 035853 472 PHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDA----MPKLESLIINPCAYLKI--LPEELWRI 544 (581)
Q Consensus 472 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~----l~~L~~L~l~~c~~l~~--lp~~l~~l 544 (581)
..|+.|++++|.++...+.. +.++++|++|+|++|..++.... .+.. +++|++|+|++|+.++. + ..+.++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence 46999999999877766443 47899999999999988875321 1222 46899999999997763 3 346789
Q ss_pred CCccEEEeeCCC
Q 035853 545 KSLTKLELWWPR 556 (581)
Q Consensus 545 ~~L~~L~l~~c~ 556 (581)
++|++|++++||
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999998
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.94 E-value=0.00035 Score=70.63 Aligned_cols=60 Identities=7% Similarity=-0.025 Sum_probs=26.4
Q ss_pred HHHhccCCceeEEEecCcccccCC-CcccCcCCCcEEeccCCCCcccChhhhcccCCcEEEecC
Q 035853 271 NAICKWFKFLRLLDLGTIVLDEYP-AGINPLLLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRW 333 (581)
Q Consensus 271 ~~~~~~~~~Lr~L~L~~~~l~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~ 333 (581)
...|.+|.+|+.+.+..+ ++.+. ..+.++ .|..+.+.. .++.++...-...+|+.+.+..
T Consensus 62 ~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 62 EANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred HHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 355666666666666432 33333 223333 344444432 2333332222223555555543
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=3.1e-05 Score=73.71 Aligned_cols=77 Identities=19% Similarity=0.046 Sum_probs=41.1
Q ss_pred ccCCceeEEEecCcccccC---CCcccCcCCCcEEeccCCCCcccChhhhccc--CCcEEEecCCccc-ccc-------h
Q 035853 275 KWFKFLRLLDLGTIVLDEY---PAGINPLLLLKYLVLNIPSLKHLPSSLCNLL--SLHTLDMRWSYIH-HTP-------D 341 (581)
Q Consensus 275 ~~~~~Lr~L~L~~~~l~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~l~-~lp-------~ 341 (581)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4556666666666665532 23444566666666666666544 2334444 5666666666442 232 1
Q ss_pred hhhcCCCCcEe
Q 035853 342 EIWKMNELRHL 352 (581)
Q Consensus 342 ~i~~l~~L~~L 352 (581)
.+..+++|+.|
T Consensus 246 il~~~P~L~~L 256 (267)
T 3rw6_A 246 IRERFPKLLRL 256 (267)
T ss_dssp HHHHCTTCCEE
T ss_pred HHHHCcccCeE
Confidence 23455566655
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.68 E-value=3e-05 Score=73.84 Aligned_cols=81 Identities=16% Similarity=0.083 Sum_probs=56.0
Q ss_pred cCcCCCcEEeccCCCCcc---cChhhhcccCCcEEEecCCcccccchhhhcCC--CCcEeecCCcccCCCCCC-------
Q 035853 298 NPLLLLKYLVLNIPSLKH---LPSSLCNLLSLHTLDMRWSYIHHTPDEIWKMN--ELRHLNFGSITLPAHPGK------- 365 (581)
Q Consensus 298 ~~l~~Lr~L~L~~~~i~~---lp~~i~~L~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------- 365 (581)
.++++|+.|+|++|.+.. +|..++.+++|+.|+|++|.+..+. .+..+. +|+.|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 356788888888888774 4456678888888888888777663 344455 788888888887655542
Q ss_pred ccCCCCCCcEecee
Q 035853 366 CCSSLENLNFISVL 379 (581)
Q Consensus 366 ~i~~l~~L~~L~l~ 379 (581)
.+..+++|+.|+..
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 24556667666643
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.002 Score=64.98 Aligned_cols=276 Identities=8% Similarity=-0.021 Sum_probs=132.6
Q ss_pred CCeeEEEEEecccCCCccccc--CCcccEEEEecccccccccchhhhhhhHHHhccCCceeEEEecCcccccCCCcccCc
Q 035853 223 EDFKRISVCRTVTNFDSWEHF--DTYLHSFLHLTVERKHLSEDVFTLEYCNAICKWFKFLRLLDLGTIVLDEYPAGINPL 300 (581)
Q Consensus 223 ~~~r~lsl~~~~~~~~~~~~~--~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~L~L~~~~l~~lp~~i~~l 300 (581)
.+++.+.+. +.....-...+ +.+|+++.+...-. . .. ...|..+ .|..+.+..+ ++.+.......
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~-~------Ig---~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~ 112 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT-S------IG---DGAFADT-KLQSYTGMER-VKKFGDYVFQG 112 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC-E------EC---TTTTTTC-CCCEEEECTT-CCEECTTTTTT
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce-E------ec---hhhhcCC-CCceEECCce-eeEeccceecc
Confidence 456777776 54433222334 78999999865422 1 22 4667777 4666655432 44444332233
Q ss_pred CCCcEEeccCCCCcccChhhhcccCCcEEEecCCcccccch-hhhcCCCCcEeecCCcccCC------------CCCCcc
Q 035853 301 LLLKYLVLNIPSLKHLPSSLCNLLSLHTLDMRWSYIHHTPD-EIWKMNELRHLNFGSITLPA------------HPGKCC 367 (581)
Q Consensus 301 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~------------~~p~~i 367 (581)
.+|+.+.+..+ +..+....-.-.+|+...+..+ +..+.. .+..+.+++...+..+.... .....+
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CCcccccCCCc-cccccccccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 47888888664 3333322222234555555433 222222 23455666666554322110 011112
Q ss_pred CCCCCCcEeceecCC-CcchhhhCCCCCCCeEEEeeecccchhchhhhcCCCCCCCEEEeecCCcccCCcccc-cCC--C
Q 035853 368 SSLENLNFISVLHPS-SCTQDILGRLPSLQTFRVHENLSSYQSMLSNNLCPLLHLESLKLVDERTIALQPSSI-VLP--E 443 (581)
Q Consensus 368 ~~l~~L~~L~l~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~i~L~~l~l-~lp--~ 443 (581)
.....+....+.... ......+..+.+|+.+.+... ....-...+..+.+|+.+.+..+ + .+. .
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~---------v~~I~~~a 258 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN---------VTSIGSFL 258 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT---------CCEECTTT
T ss_pred cccccccccccccceeEEeecccccccccceeeeccc---eeEEccccccCCccceEEEcCCC---------ccEeCccc
Confidence 222333333222211 111223344555665555432 11222234455666666666431 2 333 4
Q ss_pred CCCCCCccEEEEeeccCCCCCcccccCCCCCCeEEEecCcccCceeeeCCCCCCCCcEEEecCCCccccccc-Ccccccc
Q 035853 444 YQFPPRLIELSLSNTELKYDPMPALEKLPHLRVLKLKKNSFFGRKLVCSSGGFPSLKVMHLKSMFWLEEWTM-ENDAMPK 522 (581)
Q Consensus 444 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~ 522 (581)
+..+.+|+.+.+... +.......+.++++|+.+.+.++.+.. .-...+.++.+|+.+.|.. +++.+.. .+..|++
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccce-ehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCC
Confidence 556666777766543 222223345667777777776443321 1123455666777777653 3555533 3556666
Q ss_pred cceEeec
Q 035853 523 LESLIIN 529 (581)
Q Consensus 523 L~~L~l~ 529 (581)
|+.+.+.
T Consensus 335 L~~i~ip 341 (379)
T 4h09_A 335 LSTISYP 341 (379)
T ss_dssp CCCCCCC
T ss_pred CCEEEEC
Confidence 6666664
No 165
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.14 E-value=0.00047 Score=70.51 Aligned_cols=176 Identities=14% Similarity=0.062 Sum_probs=99.1
Q ss_pred HHHHHHHHhc--CceEEEEEEcCCCh--------hHHHHHHhhCCCC---C--CCCEEEEeCCC----------------
Q 035853 4 RKTALHDYLR--NKRYLIVFEDVISS--------DVWDYIGKALPDH---Q--NGSRVLAMLTC---------------- 52 (581)
Q Consensus 4 l~~~l~~~L~--~kr~LlVLDDv~~~--------~~~~~l~~~~~~~---~--~gs~iivTtr~---------------- 52 (581)
+...+.+.+. +++++|||||+|.. +.+..+...+... + ..-.||+||++
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~ 204 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh
Confidence 4455666665 78999999999774 3344333332211 2 33457777652
Q ss_pred ------------hHHHHHhc-ccccCcccc-CCCCChh-hHHhhcC------Ccchhhhhhccc--c---------c-ee
Q 035853 53 ------------SDEIFSLC-RLENGEMIH-LDSVPAG-PLRAKYQ------ERPLVFLYYGRN--S---------L-VE 99 (581)
Q Consensus 53 ------------~~~~~~Lf-~~f~~~~~~-~~~~~~~-~i~~~c~------GlPLal~~~g~~--t---------~-~~ 99 (581)
.++++++| +.++..... ..+.+.. .|+++|+ |.|..+..+... . + .+
T Consensus 205 ~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 205 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 16777787 442211101 1114456 8889999 999755544332 0 0 00
Q ss_pred cccc-ccccc-ccceeccccCchhhhHHHHhhhcccC--CCceechHHHHHHHH--h---cCCCCCChHHHHHHHHHHHH
Q 035853 100 NMRL-TWRIQ-KWPLLFSIVELPQHLKLCCLYLSAFR--DAFEIATKELYQLWI--A---EGFIPDNSEKTAEEYLEQLI 170 (581)
Q Consensus 100 ~~~~-~~~~~-~~~L~~sY~~L~~~lk~cFl~~a~Fp--~~~~i~~~~Li~~w~--a---~g~i~~~~~~~~~~~~~~L~ 170 (581)
.+.. ..+.. ...+.-+++.||.+.+.++..+|.++ .+..++..++...+. + .|. ++-.......+++.|+
T Consensus 285 ~v~~~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~ 363 (412)
T 1w5s_A 285 LVRKAVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-KPRGYTQYHIYLKHLT 363 (412)
T ss_dssp HHHHHHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHH
Confidence 0000 01111 13566788999999999999899765 334566666665552 2 121 1122345678899999
Q ss_pred hCCceeeeec
Q 035853 171 SRGFIKVKKR 180 (581)
Q Consensus 171 ~~~ll~~~~~ 180 (581)
+.+++.....
T Consensus 364 ~~gli~~~~~ 373 (412)
T 1w5s_A 364 SLGLVDAKPS 373 (412)
T ss_dssp HTTSEEEECC
T ss_pred hCCCEEeecc
Confidence 9999987653
No 166
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.56 E-value=0.0034 Score=62.37 Aligned_cols=178 Identities=12% Similarity=0.027 Sum_probs=98.3
Q ss_pred HHHHHHHHhcC-ceEEEEEEcCCChh---------HHHHHHhhCCCCCCCCEEEEeCCCh--------------------
Q 035853 4 RKTALHDYLRN-KRYLIVFEDVISSD---------VWDYIGKALPDHQNGSRVLAMLTCS-------------------- 53 (581)
Q Consensus 4 l~~~l~~~L~~-kr~LlVLDDv~~~~---------~~~~l~~~~~~~~~gs~iivTtr~~-------------------- 53 (581)
+.+.+.+..+. ++++||+||++..+ .+..+....... ++.++|+|++..
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 34445554443 39999999997732 234444332222 467888885421
Q ss_pred -----------HHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccccceec--cc-ccccc-c--ccceec
Q 035853 54 -----------DEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRNSLVEN--MR-LTWRI-Q--KWPLLF 114 (581)
Q Consensus 54 -----------~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~t~~~~--~~-~~~~~-~--~~~L~~ 114 (581)
+|+.+++ +.|+... ...+.+.. +|++.|+|.|+++..++.. .++. .. ...+. + ...+.-
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG~P~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDGIPGWLVVFGVE-YLRNGDFGRAMKRTLEVAKGLIMG 272 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHH-HhccccHhHHHHHHHHHHHHHHHH
Confidence 5566655 3243211 11114456 8999999999999988764 1110 00 00000 0 111111
Q ss_pred cccCc---hhhhHHHHhhhcccCCCceechHHHHHHHHhc-CCCCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEE
Q 035853 115 SIVEL---PQHLKLCCLYLSAFRDAFEIATKELYQLWIAE-GFIPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCY 190 (581)
Q Consensus 115 sY~~L---~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~-g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~ 190 (581)
.+..+ ++..+..+..+|+ + .++..++.....+. |-+ .......+++.|++.+++.... ..|.
T Consensus 273 ~l~~l~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~L~~~gli~~~~-------~~y~ 338 (350)
T 2qen_A 273 ELEELRRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKGTKI---PEPRLYALLENLKKMNWIVEED-------NTYK 338 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEET-------TEEE
T ss_pred HHHHHHhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCEEecC-------CEEE
Confidence 12223 6788999999987 3 24556665554322 111 2345678999999999998752 2355
Q ss_pred e-ChHHHHH
Q 035853 191 I-SFITRGM 198 (581)
Q Consensus 191 m-Hdli~dl 198 (581)
+ |.++++.
T Consensus 339 ~~~p~~~~~ 347 (350)
T 2qen_A 339 IADPVVATV 347 (350)
T ss_dssp ESSHHHHHH
T ss_pred EecHHHHHH
Confidence 5 5566654
No 167
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.07 E-value=0.0057 Score=60.79 Aligned_cols=165 Identities=14% Similarity=0.010 Sum_probs=91.0
Q ss_pred ceEEEEEEcCCChh-----H-HHHHHhhCCCCCCCCEEEEeCCCh-------------------------------HHHH
Q 035853 15 KRYLIVFEDVISSD-----V-WDYIGKALPDHQNGSRVLAMLTCS-------------------------------DEIF 57 (581)
Q Consensus 15 kr~LlVLDDv~~~~-----~-~~~l~~~~~~~~~gs~iivTtr~~-------------------------------~~~~ 57 (581)
++++||+||++..+ + +..+...... .++.++|+|+|.. +|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 49999999996631 2 3333322221 2367888887641 4444
Q ss_pred Hhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-----cceeccc-ccccc----cccceecccc--Cchhhh
Q 035853 58 SLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-----SLVENMR-LTWRI----QKWPLLFSIV--ELPQHL 123 (581)
Q Consensus 58 ~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-----t~~~~~~-~~~~~----~~~~L~~sY~--~L~~~l 123 (581)
+++ +.++... . ..+-. +|++.|+|.|+++..++.. +.++... ...+. ....-.+.|+ .||+..
T Consensus 216 ~~l~~~~~~~~--~-~~~~~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 292 (357)
T 2fna_A 216 EFLRRGFQEAD--I-DFKDYEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRY 292 (357)
T ss_dssp HHHHHHHHHHT--C-CCCCHHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHcC--C-CCCcHHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhccccccHHH
Confidence 444 2232100 0 12224 7899999999999988765 0110000 00000 0111112221 688999
Q ss_pred HHHHhhhcccCCCceechHHHHHHHH-hcCC-CCCChHHHHHHHHHHHHhCCceeeeeccCCCCEeEEE-eChHHHHH
Q 035853 124 KLCCLYLSAFRDAFEIATKELYQLWI-AEGF-IPDNSEKTAEEYLEQLISRGFIKVKKRRAGGTIKTCY-ISFITRGM 198 (581)
Q Consensus 124 k~cFl~~a~Fp~~~~i~~~~Li~~w~-a~g~-i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~g~~~~~~-mHdli~dl 198 (581)
+..+..+|+ |. +.+.+..... ..|. + .......+++.|++++++.... + .|. .|.++++.
T Consensus 293 ~~~l~~la~---g~--~~~~l~~~~~~~~g~~~---~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 293 LNIMRTLSK---CG--KWSDVKRALELEEGIEI---SDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHTT---CB--CHHHHHHHHHHHHCSCC---CHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred HHHHHHHHc---CC--CHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 999999998 32 4555544321 2232 2 2345678999999999998653 2 255 46677764
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.08 E-value=0.016 Score=51.90 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=17.1
Q ss_pred CcCCCcEEeccCCCCc-----ccChhhhcccCCcEEEecCCcc
Q 035853 299 PLLLLKYLVLNIPSLK-----HLPSSLCNLLSLHTLDMRWSYI 336 (581)
Q Consensus 299 ~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~l 336 (581)
.-..|+.|+|++|.|. .+.+.+..-..|++|+|++|.+
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3344555555555443 2233333344455555555543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.98 E-value=0.04 Score=45.89 Aligned_cols=51 Identities=29% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEecCcccc--cCCCcccCcCCCcEEeccCCCCcccChh-hhcccCCcEEEecCC
Q 035853 282 LLDLGTIVLD--EYPAGINPLLLLKYLVLNIPSLKHLPSS-LCNLLSLHTLDMRWS 334 (581)
Q Consensus 282 ~L~L~~~~l~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~ 334 (581)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5667777776 7776554 3677777777777777643 466777777777766
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.038 Score=46.02 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=43.1
Q ss_pred cEEeccCCCCc--ccChhhhcccCCcEEEecCCcccccchh-hhcCCCCcEeecCCccc
Q 035853 304 KYLVLNIPSLK--HLPSSLCNLLSLHTLDMRWSYIHHTPDE-IWKMNELRHLNFGSITL 359 (581)
Q Consensus 304 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~ 359 (581)
..++.+++.++ .+|..+ -.+|++|+|++|.+..+|.+ +..+++|+.|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47788888888 888654 35789999999999999876 46788899998888765
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.19 E-value=0.035 Score=51.35 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=55.3
Q ss_pred CceEEEEEEcCCC--hhHHHHHHhhCCCCCCCCEEEEeCCC---------------------hHHHHHhc-ccccCcccc
Q 035853 14 NKRYLIVFEDVIS--SDVWDYIGKALPDHQNGSRVLAMLTC---------------------SDEIFSLC-RLENGEMIH 69 (581)
Q Consensus 14 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gs~iivTtr~---------------------~~~~~~Lf-~~f~~~~~~ 69 (581)
+++.+||+||++. ...++.+...+.....+.++|+||+. .+|..+++ +.+.... .
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~ 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 4689999999965 46778887777665667889998765 17888888 5443221 1
Q ss_pred CCCCChh-hHHhhcCCcchhhhhhc
Q 035853 70 LDSVPAG-PLRAKYQERPLVFLYYG 93 (581)
Q Consensus 70 ~~~~~~~-~i~~~c~GlPLal~~~g 93 (581)
.-+.+.. .|+++|+|.|..+..+.
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~ 228 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLT 228 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1114455 89999999998877654
No 172
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.18 E-value=0.044 Score=49.09 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=20.2
Q ss_pred hhhhcccCCcEEEecCCccc-----ccchhhhcCCCCcEeecCCcccC
Q 035853 318 SSLCNLLSLHTLDMRWSYIH-----HTPDEIWKMNELRHLNFGSITLP 360 (581)
Q Consensus 318 ~~i~~L~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~ 360 (581)
+.+..-..|+.|+|++|.+. .+...+..-+.|++|+|+.|.+.
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33444445555555555442 22233334455555555555543
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.22 E-value=0.48 Score=47.17 Aligned_cols=176 Identities=13% Similarity=0.073 Sum_probs=95.5
Q ss_pred HHHHHHHHh--cCceEEEEEEcCCChh----HHHHHHhhCCCC-----CCCCEEEEeCCC--------------------
Q 035853 4 RKTALHDYL--RNKRYLIVFEDVISSD----VWDYIGKALPDH-----QNGSRVLAMLTC-------------------- 52 (581)
Q Consensus 4 l~~~l~~~L--~~kr~LlVLDDv~~~~----~~~~l~~~~~~~-----~~gs~iivTtr~-------------------- 52 (581)
+.+.+.+.+ .+++.+|||||++... ..+.+...+.+. ..+..+|.||+.
T Consensus 117 ~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i 196 (387)
T 2v1u_A 117 VYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVEL 196 (387)
T ss_dssp HHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEEC
T ss_pred HHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEE
Confidence 345556666 3568999999998753 223333222211 345677777653
Q ss_pred ------hHHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccc-hhhhhhccc-c---------ce-ecccc-cccc
Q 035853 53 ------SDEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERP-LVFLYYGRN-S---------LV-ENMRL-TWRI 107 (581)
Q Consensus 53 ------~~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlP-Lal~~~g~~-t---------~~-~~~~~-~~~~ 107 (581)
.++..+++ +.+........- .+.. .++++++ |.| .|+.++..+ . +. +.+.. ..+.
T Consensus 197 ~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 197 VFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 07777777 443321001111 5556 7888887 999 444444333 0 00 00000 0000
Q ss_pred cccceeccccCchhhhHHHHhhhcccCCC-ceechHHHHHHHH----hcCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 035853 108 QKWPLLFSIVELPQHLKLCCLYLSAFRDA-FEIATKELYQLWI----AEGFIPDNSEKTAEEYLEQLISRGFIKVKKR 180 (581)
Q Consensus 108 ~~~~L~~sY~~L~~~lk~cFl~~a~Fp~~-~~i~~~~Li~~w~----a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 180 (581)
....+.-++..||.+.|..++.++....+ ..+...++.+... ..| ..+-.......+++.|...++++....
T Consensus 277 ~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 277 ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEHVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCeEEEee
Confidence 03344556688998888777777733323 2455554444332 234 333445677889999999999998653
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.99 E-value=0.31 Score=48.69 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=94.7
Q ss_pred HHHHHHHHHhcCceEEEEEEcCCChhH---HHH-HHhhCCCCCCCCEEEEeCCC-------------------------h
Q 035853 3 QRKTALHDYLRNKRYLIVFEDVISSDV---WDY-IGKALPDHQNGSRVLAMLTC-------------------------S 53 (581)
Q Consensus 3 ~l~~~l~~~L~~kr~LlVLDDv~~~~~---~~~-l~~~~~~~~~gs~iivTtr~-------------------------~ 53 (581)
++.+.+.+.++.++.+|||||++.... .+. +...+.+. .+.+||+||+. .
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 445667777877777999999977532 223 22222333 67888888774 0
Q ss_pred HHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccch-hhhhhccc-c-------ce-ecccc-cccccccceeccc
Q 035853 54 DEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERPL-VFLYYGRN-S-------LV-ENMRL-TWRIQKWPLLFSI 116 (581)
Q Consensus 54 ~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlPL-al~~~g~~-t-------~~-~~~~~-~~~~~~~~L~~sY 116 (581)
++..+++ +.+........- .+.. .++++|+ |.|- |+.++-.+ . +- +.+.. ..+.....+.-++
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~ 279 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAV 279 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHH
Confidence 7788888 543210001111 4455 7777777 8776 44443332 0 00 00000 0000033455667
Q ss_pred cCchhhhHHHHhhhcccCCCceechHHHHHHHHhcCCCCCChHHHHHHHHHHHHhCCceeeeec
Q 035853 117 VELPQHLKLCCLYLSAFRDAFEIATKELYQLWIAEGFIPDNSEKTAEEYLEQLISRGFIKVKKR 180 (581)
Q Consensus 117 ~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~ 180 (581)
+.|+.+.|..+..++....+-.+. +.....--..| ..+........+++.|.++++++....
T Consensus 280 ~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 280 KALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 889888877776666511101111 12222222334 222344567789999999999998664
No 175
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.57 E-value=0.53 Score=46.99 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=107.2
Q ss_pred HHHHHHHhc--CceEEEEEEcCCCh--hHHHHHHhhCCCCC----CCCEEEEeCCCh-----------------------
Q 035853 5 KTALHDYLR--NKRYLIVFEDVISS--DVWDYIGKALPDHQ----NGSRVLAMLTCS----------------------- 53 (581)
Q Consensus 5 ~~~l~~~L~--~kr~LlVLDDv~~~--~~~~~l~~~~~~~~----~gs~iivTtr~~----------------------- 53 (581)
.+.+.+.+. +++.+|||||++.. +.++.+...+.... .+..||+||++.
T Consensus 113 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~p 192 (389)
T 1fnn_A 113 LALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSP 192 (389)
T ss_dssp HHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCC
Confidence 344444443 67899999999774 55667766664322 366777776640
Q ss_pred ---HHHHHhc-ccccCcc-ccCCCCChh-hHHhhc---------CCcchhhhhh-ccc-c---------ce-ecccc-cc
Q 035853 54 ---DEIFSLC-RLENGEM-IHLDSVPAG-PLRAKY---------QERPLVFLYY-GRN-S---------LV-ENMRL-TW 105 (581)
Q Consensus 54 ---~~~~~Lf-~~f~~~~-~~~~~~~~~-~i~~~c---------~GlPLal~~~-g~~-t---------~~-~~~~~-~~ 105 (581)
++..+++ +.+.... ...-+.+.. .+++++ .|.|-.+..+ ..+ . +. +.+.. ..
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 5566666 3332100 011113445 788888 7876544333 222 0 00 00000 00
Q ss_pred cccccceeccccCchhhhHHHHhhhcccC---CCceechHHHHHHHHh----cCCCCCChHHHHHHHHHHHHhCCceeee
Q 035853 106 RIQKWPLLFSIVELPQHLKLCCLYLSAFR---DAFEIATKELYQLWIA----EGFIPDNSEKTAEEYLEQLISRGFIKVK 178 (581)
Q Consensus 106 ~~~~~~L~~sY~~L~~~lk~cFl~~a~Fp---~~~~i~~~~Li~~w~a----~g~i~~~~~~~~~~~~~~L~~~~ll~~~ 178 (581)
+.....+.-.+..||.+.|..+..++.+. .+-.+...++.+.+.. .|.. +-.......++++|.+++++...
T Consensus 273 ~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 273 EVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGER-PRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCeEEe
Confidence 00033444556788888888777777654 3325666777665543 3422 12234567899999999999987
Q ss_pred ec----cCCCCEeEEE----eChHHHHHHHHhcc
Q 035853 179 KR----RAGGTIKTCY----ISFITRGMLVLVAE 204 (581)
Q Consensus 179 ~~----~~~g~~~~~~----mHdli~dl~~~i~~ 204 (581)
.. +..|+...++ .||++..+...+..
T Consensus 352 ~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~ 385 (389)
T 1fnn_A 352 QNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIK 385 (389)
T ss_dssp EC---------CEEEECCSSCHHHHHHHHHHHHH
T ss_pred eeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHH
Confidence 64 2223333343 34666666555443
No 176
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.69 E-value=0.23 Score=48.31 Aligned_cols=120 Identities=10% Similarity=-0.078 Sum_probs=62.0
Q ss_pred ceEEEEEEcCCCh--hHHHHHHhhCCCCC------------------CCCEEEEeCCC----------------------
Q 035853 15 KRYLIVFEDVISS--DVWDYIGKALPDHQ------------------NGSRVLAMLTC---------------------- 52 (581)
Q Consensus 15 kr~LlVLDDv~~~--~~~~~l~~~~~~~~------------------~gs~iivTtr~---------------------- 52 (581)
+..+|+|||+... ...+.+...+.... ++.++|.||..
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 6679999999775 34444543332211 23466666542
Q ss_pred hHHHHHhc-ccccCccccCCCCChh-hHHhhcCCcchhhhhhccc-c--ce--e--ccccccccc--ccceeccccCchh
Q 035853 53 SDEIFSLC-RLENGEMIHLDSVPAG-PLRAKYQERPLVFLYYGRN-S--LV--E--NMRLTWRIQ--KWPLLFSIVELPQ 121 (581)
Q Consensus 53 ~~~~~~Lf-~~f~~~~~~~~~~~~~-~i~~~c~GlPLal~~~g~~-t--~~--~--~~~~~~~~~--~~~L~~sY~~L~~ 121 (581)
.+|..+++ +...... ..-+.+.. .+++++.|.|-.+..+... . .. . .+. ...+. ...+..++..++.
T Consensus 170 ~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~-~~~~~~~~~~~~~~~~~l~~ 247 (324)
T 1hqc_A 170 PEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVIT-RERALEALAALGLDELGLEK 247 (324)
T ss_dssp HHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCC-HHHHHHHHHHHTCCTTCCCH
T ss_pred HHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhcccccCCCH
Confidence 06666666 4333211 11114455 8899999999877654333 0 00 0 000 00000 2223445667777
Q ss_pred hhHHHHhhhcccCCC
Q 035853 122 HLKLCCLYLSAFRDA 136 (581)
Q Consensus 122 ~lk~cFl~~a~Fp~~ 136 (581)
..+..+....-...+
T Consensus 248 ~e~~~i~~~~~~~~g 262 (324)
T 1hqc_A 248 RDREILEVLILRFGG 262 (324)
T ss_dssp HHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcC
Confidence 777777665544333
No 177
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.73 E-value=0.54 Score=42.40 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=29.3
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++.+||+||++.. ..++.+...+.....+.++|+||+.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 67899999999775 4566666666555667889998765
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.80 E-value=0.65 Score=44.90 Aligned_cols=81 Identities=7% Similarity=0.022 Sum_probs=50.8
Q ss_pred cCceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCCh---------------------HHHHHhc-ccccCccc
Q 035853 13 RNKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTCS---------------------DEIFSLC-RLENGEMI 68 (581)
Q Consensus 13 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~~---------------------~~~~~Lf-~~f~~~~~ 68 (581)
.+++.+||+||++.. ..++.+...+.....+.++|+||+.. ++..+++ +.+....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~- 183 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED- 183 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC-
Confidence 456899999999774 45666665555555678888887651 6666666 4332211
Q ss_pred cCCC-CChh-hHHhhcCCcch-hhhhhccc
Q 035853 69 HLDS-VPAG-PLRAKYQERPL-VFLYYGRN 95 (581)
Q Consensus 69 ~~~~-~~~~-~i~~~c~GlPL-al~~~g~~ 95 (581)
.+- .+.. .+++.|+|.|. |+..+...
T Consensus 184 -~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 184 -VKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp -CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 3445 88999999994 44444333
No 179
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.94 E-value=3.2 Score=40.99 Aligned_cols=173 Identities=12% Similarity=0.111 Sum_probs=90.0
Q ss_pred HHHHHHHhc--CceEEEEEEcCCCh------hHHHHHHhhCCC-CCCCCEEEEeCCC-----------------------
Q 035853 5 KTALHDYLR--NKRYLIVFEDVISS------DVWDYIGKALPD-HQNGSRVLAMLTC----------------------- 52 (581)
Q Consensus 5 ~~~l~~~L~--~kr~LlVLDDv~~~------~~~~~l~~~~~~-~~~gs~iivTtr~----------------------- 52 (581)
.+.+.+.+. +++.+|||||++.. +.+..+...... ...+..+|+||+.
T Consensus 116 ~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~ 195 (386)
T 2qby_A 116 YRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFP 195 (386)
T ss_dssp HHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEEC
T ss_pred HHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeC
Confidence 445555554 45899999999763 334445443322 2334566777653
Q ss_pred ---hHHHHHhc-ccccCccccCCC-CChh-hHHhhcC---Ccchhh-hhhccc-ccee-----ccccccccc-------c
Q 035853 53 ---SDEIFSLC-RLENGEMIHLDS-VPAG-PLRAKYQ---ERPLVF-LYYGRN-SLVE-----NMRLTWRIQ-------K 109 (581)
Q Consensus 53 ---~~~~~~Lf-~~f~~~~~~~~~-~~~~-~i~~~c~---GlPLal-~~~g~~-t~~~-----~~~~~~~~~-------~ 109 (581)
.++..+++ +.+........- .+.. .++++++ |.|..+ .++..+ .... .+. ...+. .
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~-~~~v~~a~~~~~~ 274 (386)
T 2qby_A 196 PYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVK-EEYVYMAKEEIER 274 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccC-HHHHHHHHHHHhh
Confidence 07777777 443211001111 3445 6777777 988844 333332 0000 000 00000 2
Q ss_pred cceeccccCchhhhHHHHhhhcccCC-C-ceechHHHHHHH----HhcCCCCCChHHHHHHHHHHHHhCCceeeee
Q 035853 110 WPLLFSIVELPQHLKLCCLYLSAFRD-A-FEIATKELYQLW----IAEGFIPDNSEKTAEEYLEQLISRGFIKVKK 179 (581)
Q Consensus 110 ~~L~~sY~~L~~~lk~cFl~~a~Fp~-~-~~i~~~~Li~~w----~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~ 179 (581)
..+.-++..||.+.+..+..++...+ + ..+...++.+.+ -..| +.+-.......+++.|.+.+++....
T Consensus 275 ~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 275 DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 34555667888888887777775332 2 124444443322 1233 22223345678999999999998764
No 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.65 E-value=5.6 Score=38.16 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=29.8
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++.+||+||++.. +.++.+...+.....+.++|+||+.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 67889999999765 5677777666655667889988765
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.74 E-value=14 Score=36.01 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=28.1
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++.+||+||+... ..++.+...+.....+..+|+||..
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 56789999999664 5677777666655556777777654
No 182
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=30.68 E-value=29 Score=18.70 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.2
Q ss_pred hCCCCCCCCEEEEeCCC
Q 035853 36 ALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 36 ~~~~~~~gs~iivTtr~ 52 (581)
|+|.-..|+.|+|||..
T Consensus 3 PlPa~eeGaT~lVtTKT 19 (26)
T 2gkw_B 3 PVPATELGSTELVTTKT 19 (26)
T ss_pred cccccccCceEEEEecc
Confidence 45666779999999863
No 183
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=28.44 E-value=32 Score=29.91 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=25.5
Q ss_pred hcCceEEEEEEcCCCh-hHHHHHHhhCCCCCCCCEEEEe
Q 035853 12 LRNKRYLIVFEDVISS-DVWDYIGKALPDHQNGSRVLAM 49 (581)
Q Consensus 12 L~~kr~LlVLDDv~~~-~~~~~l~~~~~~~~~gs~iivT 49 (581)
+++|.+ |+.|||.+. ....++...+...++.|..+.|
T Consensus 93 i~gk~V-llVDDIldTG~Tl~~~~~~l~~~~p~sv~~av 130 (181)
T 3acd_A 93 IHGRDV-IVVEDIVDTGLTLSYLLDYLEARKPASVRVAA 130 (181)
T ss_dssp CTTCEE-EEEEEEESSSHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cCCCee-EEEEEEEcCchhHHHHHHHHhcCCCCEEEEEE
Confidence 445665 556999877 5677777777777777755555
No 184
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=23.20 E-value=91 Score=26.58 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHhcCceEEEEEEcCCChhHHHHHHhhCCCCCCCCEEEEeCC
Q 035853 6 TALHDYLRNKRYLIVFEDVISSDVWDYIGKALPDHQNGSRVLAMLT 51 (581)
Q Consensus 6 ~~l~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gs~iivTtr 51 (581)
+.+++.+. ++.||||++.+......+......+|-..-+|+..+
T Consensus 2 ~~~~~~~~--~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~ 45 (173)
T 3kty_A 2 NAMTQAFS--RVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPR 45 (173)
T ss_dssp HHHHHHHT--TEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS
T ss_pred chhhhhhC--CeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCC
Confidence 35666664 589999999999999998888777764444444444
No 185
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.41 E-value=51 Score=30.96 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=29.8
Q ss_pred CceEEEEEEcCCCh--hHHHHHHhhCCCCCCCCEEEEeCCC
Q 035853 14 NKRYLIVFEDVISS--DVWDYIGKALPDHQNGSRVLAMLTC 52 (581)
Q Consensus 14 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gs~iivTtr~ 52 (581)
+++-++|+||++.. +..+.+...+.....+.++|+||..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 66889999999764 4567777777766667888888765
No 186
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=22.19 E-value=30 Score=29.60 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=21.8
Q ss_pred ceEEEEEEcCCC--hhHHH--HHHhhCCC-CCCCCEEEEeCCC
Q 035853 15 KRYLIVFEDVIS--SDVWD--YIGKALPD-HQNGSRVLAMLTC 52 (581)
Q Consensus 15 kr~LlVLDDv~~--~~~~~--~l~~~~~~-~~~gs~iivTtr~ 52 (581)
+.-+|||||++. .+.|. .+...+.. ...|..||+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345889999983 33333 22222221 1246788888864
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=20.98 E-value=72 Score=29.31 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=13.3
Q ss_pred HHHHhcCceEEEEEEcCCC
Q 035853 8 LHDYLRNKRYLIVFEDVIS 26 (581)
Q Consensus 8 l~~~L~~kr~LlVLDDv~~ 26 (581)
+.+..+.+.-+|+|||+..
T Consensus 117 ~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp HHHHHTSSEEEEEECCHHH
T ss_pred HHHHHhcCCcEEEEEChhh
Confidence 3333446789999999854
Done!