Your job contains 1 sequence.
>035855
MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL
DRVLQDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT
LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV
EVKRALPKDANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFEGRMESNRYMQPQNPG
SGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNAGYGGPAGTPYGNPNVPNTGYAS
GPPGAPRSSWGTQTPSGYGAMGYGNAAAWGAGGSSGGPGSAHAGQSPSGATGYGNQGYGY
GGYGGSDGSYGNPSGYGAVGGRSGSVPNSNAGNQGGGELQGSGGGYMGSGYGDANGNPGY
GNAAWRSDPSQASGNYGTQGNGYGGYSGASRQAQQQ
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 035855
(456 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 764 9.6e-86 3
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 757 4.6e-84 3
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 648 1.6e-63 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 607 4.2e-61 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 620 1.5e-60 1
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 464 5.0e-44 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 440 5.9e-44 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 441 7.6e-44 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 441 7.6e-44 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 440 9.6e-44 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 440 9.6e-44 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 440 9.6e-44 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 440 9.6e-44 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 438 1.6e-43 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 432 2.0e-43 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 435 4.1e-43 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 434 4.1e-43 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 240 1.4e-42 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 264 1.9e-42 2
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 240 2.8e-42 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 432 1.2e-40 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 432 1.2e-40 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 426 5.3e-40 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 426 5.3e-40 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 426 5.3e-40 1
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 255 1.6e-39 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 418 3.7e-39 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 413 1.3e-38 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 410 2.6e-38 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 409 3.4e-38 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 239 3.5e-38 2
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 407 5.5e-38 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 404 1.1e-37 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 404 1.1e-37 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 404 1.1e-37 1
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 401 2.4e-37 1
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 238 2.5e-37 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 233 3.0e-37 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 228 3.1e-37 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 228 3.1e-37 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 228 3.1e-37 2
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 228 3.1e-37 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 228 3.1e-37 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 397 6.3e-37 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 225 8.2e-37 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 212 9.5e-37 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 214 1.3e-36 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 214 1.3e-36 2
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 225 1.7e-36 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 225 1.7e-36 2
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 225 1.7e-36 2
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 218 1.7e-36 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 236 2.5e-36 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 225 1.2e-35 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 383 1.9e-35 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 218 3.9e-35 2
ZFIN|ZDB-GENE-040426-1546 - symbol:zgc:66127 "zgc:66127" ... 355 6.3e-35 2
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 352 8.1e-35 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 376 1.1e-34 1
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 218 2.7e-34 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 218 4.4e-34 2
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 214 5.6e-34 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 203 9.2e-34 2
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 214 1.1e-33 2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 371 1.4e-33 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 214 2.3e-33 2
UNIPROTKB|F1N2T0 - symbol:HNRPDL "Uncharacterized protein... 218 5.9e-33 2
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 218 5.9e-33 2
UNIPROTKB|O14979 - symbol:HNRPDL "Heterogeneous nuclear r... 218 5.9e-33 2
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 204 6.2e-33 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 212 7.9e-33 2
UNIPROTKB|Q2HJ60 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 358 8.5e-33 1
UNIPROTKB|F1Q1K6 - symbol:HNRNPA2B1 "Uncharacterized prot... 358 8.5e-33 1
UNIPROTKB|P22626 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 358 8.5e-33 1
MGI|MGI:104819 - symbol:Hnrnpa2b1 "heterogeneous nuclear ... 358 8.5e-33 1
UNIPROTKB|F1LM82 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 358 8.5e-33 1
UNIPROTKB|F1LNF1 - symbol:Hnrnpa2b1 "Heterogeneous nuclea... 358 8.5e-33 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 198 1.0e-32 2
RGD|1310403 - symbol:Hnrnpa2b1 "heterogeneous nuclear rib... 357 1.1e-32 1
UNIPROTKB|P09867 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|E2QYP1 - symbol:HNRNPA1 "Uncharacterized protei... 357 1.1e-32 1
UNIPROTKB|F1Q3G7 - symbol:HNRNPA1 "Uncharacterized protei... 357 1.1e-32 1
UNIPROTKB|F8VRQ1 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|F8VSB5 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|F8VXY0 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|F8VZ49 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|F8W1S7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|F8W6I7 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|P09651 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|Q06A94 - symbol:HNRNPA1 "Uncharacterized protei... 357 1.1e-32 1
UNIPROTKB|A5A6H4 - symbol:HNRNPA1 "Heterogeneous nuclear ... 357 1.1e-32 1
MGI|MGI:104820 - symbol:Hnrnpa1 "heterogeneous nuclear ri... 357 1.1e-32 1
UNIPROTKB|D4ACJ7 - symbol:Hnrnpa1 "RCG50547, isoform CRA_... 357 1.1e-32 1
UNIPROTKB|D4ACJ8 - symbol:Hnrnpa1 "Heterogeneous nuclear ... 357 1.1e-32 1
UNIPROTKB|Q5I0M7 - symbol:Hnrnpa1 "Hnrpa1 protein" specie... 357 1.1e-32 1
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 357 1.1e-32 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 206 1.2e-32 2
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 206 1.2e-32 2
UNIPROTKB|F1RX74 - symbol:HNRNPA2B1 "Uncharacterized prot... 356 1.4e-32 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 200 1.6e-32 2
WARNING: Descriptions of 1029 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 764 (274.0 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 148/242 (61%), Positives = 175/242 (72%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
MDSDQGKLF+GGISWET E++LRE+F+ YG+V Q +VMR+K TGRPRGFGFV+F+DPS+L
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
DRVLQ+KHS+D R V+ KRAMSREEQQ S KKIFVGGLPPT
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF+SFD+EDAVD VL KTFHDL+GKQV
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 181 EVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXNASAFEGRMESNRYMQPQNPG 240
EVKRALPKDANP N S+++GRM+SNR++Q Q+ G
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGYQGYGG-------NESSYDGRMDSNRFLQHQSVG 233
Query: 241 SG 242
+G
Sbjct: 234 NG 235
Score = 63 (27.2 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 419 GYGNAAWRSDPSQ 431
GYG+ +WRSDPSQ
Sbjct: 384 GYGDGSWRSDPSQ 396
Score = 63 (27.2 bits), Expect = 9.6e-86, Sum P(3) = 9.6e-86
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 292 NVPNTGYASGPPGAPRSSWGT 312
N+P GY S APR+SW T
Sbjct: 282 NIPGAGYGSSTGVAPRNSWDT 302
Score = 38 (18.4 bits), Expect = 4.0e-83, Sum P(3) = 4.0e-83
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 417 NPGYGNAAWRS 427
NPGYG+ A S
Sbjct: 310 NPGYGSGAAHS 320
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 757 (271.5 bits), Expect = 4.6e-84, Sum P(3) = 4.6e-84
Identities = 148/243 (60%), Positives = 167/243 (68%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
M+SDQGKLFIGGISW+T E LREYFS +G+VLQ VMREK TGRPRGFGFV F+DP+++
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
DRVLQDKH +D R V+ KRAMSREEQ + KKIFVGGLPP
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
LT D FR YFE YG V+D VIM DQ TQRPRGFGF+SFD+ED+VD VL KTFHDLNGKQV
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 181 EVKRALPKDANPXXXXXXXXXXXXXXXXXXXXXXXXXXXNASAFEGRMESNRYMQPQNPG 240
EVKRALPKDANP S +EGR++SNRYMQPQN G
Sbjct: 181 EVKRALPKDANPGIASGGGRGSGGAGGFPGYGGS-----GGSGYEGRVDSNRYMQPQNTG 235
Query: 241 SGF 243
SG+
Sbjct: 236 SGY 238
Score = 65 (27.9 bits), Expect = 4.6e-84, Sum P(3) = 4.6e-84
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 292 NVPNTGYASGPPGAPRSSWGTQTP 315
+VP G+ SGP RSSWG Q P
Sbjct: 277 SVPGAGFGSGP----RSSWGAQAP 296
Score = 52 (23.4 bits), Expect = 4.6e-84, Sum P(3) = 4.6e-84
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 378 AVGGRSGSVPNSN 390
AVGGRSG++PN++
Sbjct: 352 AVGGRSGNMPNNH 364
Score = 39 (18.8 bits), Expect = 1.1e-82, Sum P(3) = 1.1e-82
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 417 NPGYGNAA-W 425
N GYGNAA W
Sbjct: 301 NVGYGNAAPW 310
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 117/192 (60%), Positives = 149/192 (77%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
M+SD GKLFIGGISW+T EERLR+YFS YGDV++ V+MR++ TGR RGFGF+VFADP +
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
+RV+ DKH +DGRTVEAK+A+ R++QQ KKIFVGGLP +
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
+TE+ F+ YF+ +G + DVV+MYD NTQRPRGFGFI+FD++DAVDRVL KTFH+LNGK V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 181 EVKRALPKDANP 192
EVKRA+PK+ +P
Sbjct: 181 EVKRAVPKEISP 192
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 607 (218.7 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 109/192 (56%), Positives = 148/192 (77%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
M SD GKLFIGGISW+T+EERL+EYFS +G+V++ V+++++TTGR RGFGFVVFADP++
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
+ V+ +KH++DGR VEAK+A+ R++Q +KIFVGGLP +
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNM--VNRSNSSSIQGSPGGPGRTRKIFVGGLPSS 118
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
+TE F+ YFE +G TDVV+MYD NTQRPRGFGFI++D+E+AV++VL KTFH+LNGK V
Sbjct: 119 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMV 178
Query: 181 EVKRALPKDANP 192
EVKRA+PK+ +P
Sbjct: 179 EVKRAVPKELSP 190
Score = 36 (17.7 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 420 YGNAAWRSDPS 430
YGN A SDP+
Sbjct: 431 YGNGAVYSDPT 441
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 114/190 (60%), Positives = 146/190 (76%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
SD GKLFIGGISW+T EERL+EYF +YGD+++ V+MR++TTGR RGFGF+VFADPS+ +R
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VLQDKHSLDGRTVEAKRAMSREEQQF---SAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
V+ DKH +DGRTVEAK+A+ R++QQ A KKIFVGGLP
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
++TE F+ YF+ +G + DVV+MYD NTQRPRGFGFI+FD+E++VD VL KTFH+LNGK
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 180 VEVKRALPKD 189
VEVKRA+PK+
Sbjct: 192 VEVKRAVPKE 201
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 94/199 (47%), Positives = 131/199 (65%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
MD D+ KLF+GGI+ ETSEE L++YFS+YG VL+ VV +EK TG+PRGFGFV FA+ +
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREE---QQFS-------AXXXXXXXXXXXXXXXXXXXK 110
+ L+D H + G+ V+ ++A+ + E Q FS K
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGGL TE+ F+ YFE +G TDVV+M+D T RPRGFGF+++D+ED+V+ V+Q
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 171 TFHDLNGKQVEVKRALPKD 189
FH+L+ K+VEVKRA+PK+
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 440 (159.9 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 86/186 (46%), Positives = 117/186 (62%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++K+T + RGFGFV F DP+ + VL
Sbjct: 11 GKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLD 70
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
K H+LDGR ++ K R Q KKIFVGG+P E
Sbjct: 71 TKPHNLDGRNIDPKPCTPRGMQP---EKTRTKDGWKGSKSDSNKSKKIFVGGIPHNCGEA 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R YF +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVK+
Sbjct: 128 ELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKKVEVKK 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 178 (67.7 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D++T + RGFGF+ F + V VL
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+G+ ++ K P+ P
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQP 93
Score = 157 (60.3 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 33/87 (37%), Positives = 53/87 (60%)
Query: 2 DSDQGK-LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVF-ADPSI 59
DS++ K +F+GGI E LR+YF+++G V + V++ + RPRGFGF+ F A+ S+
Sbjct: 108 DSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSV 167
Query: 60 LDRVLQDKHSLDGRTVEAKRAMSREEQ 86
V H + G+ VE K+A R+ +
Sbjct: 168 DQAVNMHFHDIMGKKVEVKKAEPRDSK 194
Score = 40 (19.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQ 313
P TG P G P+ + TQ
Sbjct: 272 PPTGGFGAPQGYPQQGFSTQ 291
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 441 (160.3 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 176 (67.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 165 (63.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D+
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HSLDGRTVEAKRAMSREEQ 86
+ H + G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 38 (18.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 249 PPAGRGAPPPPPPFTSYIVSTP 270
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 441 (160.3 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGET 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 176 (67.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 165 (63.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D+
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VLQDK-HSLDGRTVEAKRAMSREEQ 86
+ H + G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 38 (18.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 249 PPAGRGAPPPPPPFTSYIVSTP 270
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 440 (159.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 176 (67.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 166 (63.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 38 (18.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 249 PPAGRGAPPPPPPFTSYIVSTP 270
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 440 (159.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 176 (67.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 166 (63.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 38 (18.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 249 PPAGRGAPPPPPPFTSYIVSTP 270
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 440 (159.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGET 127
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 187
Query: 185 ALPKDA 190
A P+D+
Sbjct: 188 AEPRDS 193
Score = 176 (67.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 166 (63.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAEPRDSK 194
Score = 38 (18.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 249 PPAGRGAPPPPPPFTSYIVSTP 270
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 440 (159.9 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 86/186 (46%), Positives = 118/186 (63%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP---ERTRPKEGWKGPRSDSSKSNKIFVGGIPHNCGET 126
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 127 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 186
Query: 185 ALPKDA 190
A P+D+
Sbjct: 187 AEPRDS 192
Score = 176 (67.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 165 (63.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D+
Sbjct: 109 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 168
Query: 63 VLQDK-HSLDGRTVEAKRAMSREEQ 86
+ H + G+ VE KRA R+ +
Sbjct: 169 AVNMHFHDIMGKKVEVKRAEPRDSK 193
Score = 38 (18.4 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 248 PPAGRGAPPPPPPFTSYIVSTP 269
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 438 (159.2 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 85/186 (45%), Positives = 117/186 (62%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQP-ERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGET 128
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
++YF +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKR
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 188
Query: 185 ALPKDA 190
A P+D+
Sbjct: 189 AEPRDS 194
Score = 176 (67.0 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQP 92
Score = 163 (62.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E L+EYF+++G V + V++ + RPRGFGF+ F D +D
Sbjct: 110 NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 170 QAVNMHFHDIMGKKVEVKRAEPRDSK 195
Score = 38 (18.4 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 294 PNTGYASGPPGAP 306
P GY GPP P
Sbjct: 287 PPFGYGYGPPPPP 299
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 432 (157.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 87/193 (45%), Positives = 125/193 (64%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M+ D+ GKLF+GG+SWET++E L YF ++GD++ VVM+ +GR RGFGFV FADP+
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 60 LDRVLQD-KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
++ VLQ+ H+LDGRT++ K R Q+ K+F+GGLP
Sbjct: 61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGY----------------KVFLGGLP 104
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+TE R +F YG VT+VVIMYDQ ++ RGFGF+SF+ E +V+ V + + +LNGK
Sbjct: 105 SNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGK 164
Query: 179 QVEVKRALPKDAN 191
QVE+K+A P+D +
Sbjct: 165 QVEIKKAEPRDGS 177
Score = 43 (20.2 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 292 NVPNTGYASGPPGAPRSSWGTQT 314
N+P ++GP GAP + GT T
Sbjct: 313 NMPPN--SAGPTGAPGAGAGTAT 333
Score = 39 (18.8 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 292 NVPNTGYASGPPGAPRSSWGT 312
N +TG SGP G SW +
Sbjct: 293 NSTSTGAPSGPSGG--GSWNS 311
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 435 (158.2 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 85/185 (45%), Positives = 117/185 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETE 118
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKRA
Sbjct: 119 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 178
Query: 186 LPKDA 190
P+D+
Sbjct: 179 EPRDS 183
Score = 176 (67.0 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQP 82
Score = 163 (62.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
++ K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 99 NNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 158
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 159 QAVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 37 (18.1 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 239 PPPGRGAPPPPPPFASYIVSTP 260
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 434 (157.8 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 85/185 (45%), Positives = 117/185 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H+LDGR ++ K R Q KIFVGG+P E
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETE 118
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEVKRA
Sbjct: 119 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 178
Query: 186 LPKDA 190
P+D+
Sbjct: 179 EPRDS 183
Score = 176 (67.0 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K P+ P
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQP 82
Score = 166 (63.5 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 99 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 158
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 159 QAVNMHFHDIMGKKVEVKRAEPRDSK 184
Score = 38 (18.4 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 239 PPAGRGAPPPPPPFTSYIVSTP 260
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 240 (89.5 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+P E R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ +
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 200
Query: 171 TFHDLNGKQVEVKRALPKDA 190
FHD+ GK+VEVKRA P+D+
Sbjct: 201 HFHDIMGKKVEVKRAEPRDS 220
Score = 227 (85.0 bits), Expect = 1.4e-42, Sum P(2) = 1.4e-42
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 67 K-HSLDGRTVEAKRAMSREEQQFS 89
+ H+LDGR ++ K+ R + S
Sbjct: 116 RPHTLDGRNIDPKQKGPRSDNSKS 139
Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 55 RKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 114
Query: 170 KTFHDLNGKQVEVKRALPKDAN 191
H L+G+ ++ K+ P+ N
Sbjct: 115 SRPHTLDGRNIDPKQKGPRSDN 136
Score = 166 (63.5 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 136 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 195
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 196 QAVNMHFHDIMGKKVEVKRAEPRDSK 221
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 264 (98.0 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 44/87 (50%), Positives = 67/87 (77%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
+ GK+FIGG++WET+++ LR+YF Q+G+VL VMR+ TTGR RGFGF+ F +P ++ V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 LQDKHSLDGRTVEAKRAMSREEQQFSA 90
+ +H LDG+ ++ KRA+ REEQ+ +A
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQEKTA 247
Score = 212 (79.7 bits), Expect = 1.9e-42, Sum P(2) = 1.9e-42
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGG+P TE+ FR +F +G V D +M D++T RPRGFGF++++ E AV+ + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 171 TFHDLNGKQVEVKRALPK 188
+ ++GK VEVKRA PK
Sbjct: 308 PYITIHGKPVEVKRATPK 325
Score = 185 (70.2 bits), Expect = 8.6e-13, P = 8.6e-13
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+D R YFE +G V D +M D T R RGFGF++F V+ V+ K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 171 TFHDLNGKQVEVKRALPKD 189
H L+GK ++ KRA+P++
Sbjct: 224 EHH-LDGKIIDPKRAIPRE 241
Score = 175 (66.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+ + +EE R +F+Q+G VL +M +K TGRPRGFGFV + + S ++ +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 67 KH-SLDGRTVEAKRA 80
+ ++ G+ VE KRA
Sbjct: 308 PYITIHGKPVEVKRA 322
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 240 (89.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+P E R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ +
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 151
Query: 171 TFHDLNGKQVEVKRALPKDA 190
FHD+ GK+VEVKRA P+D+
Sbjct: 152 HFHDIMGKKVEVKRAEPRDS 171
Score = 224 (83.9 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 40/76 (52%), Positives = 56/76 (73%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRA 80
+ H+LDGR + R+
Sbjct: 70 SRPHTLDGRNQKGPRS 85
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 87 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 146
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 147 QAVNMHFHDIMGKKVEVKRAEPRDSK 172
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + T++ R YF YG V D VIM D+ T + RGFGF+ F + V VL
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 171 TFHDLNGKQVEVKRA 185
H L+G+ + R+
Sbjct: 71 RPHTLDGRNQKGPRS 85
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 84/187 (44%), Positives = 117/187 (62%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
S GKLF+GG+SWET+ E YF ++G+V+ +V+M ++ TG PRGFGFV FAD ++ ++
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122
Query: 63 VLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
VL++ H +D R V+ KR + R ++ +KIFVGGLPP L
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKD-------------TDIKAVSKTRKIFVGGLPPLLE 169
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK-TFHDLNGKQVE 181
ED + YF YG + + IMYD +T R RGFGF++F TED+VDR+ H+L KQVE
Sbjct: 170 EDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVE 229
Query: 182 VKRALPK 188
+KRA PK
Sbjct: 230 IKRAEPK 236
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 82/187 (43%), Positives = 121/187 (64%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+T+ E LR+YF ++G+V + +VMR+ T R RGFGF+ F DPS +D+V
Sbjct: 43 DPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKV 102
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L ++ H LDG+ ++ K A + Q KK+F+GGL T T
Sbjct: 103 LNNREHELDGKKIDPKVAFPKRTQ----------------AKLVTKTKKVFIGGLSATST 146
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE YG V D ++M+D+ TQR RGFGF++FD+++ D+V + FH++NGK VE
Sbjct: 147 LEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEINGKMVEC 206
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 207 KKAQPKE 213
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 87/189 (46%), Positives = 120/189 (63%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
+D GK+FIGG+SW+TS E LR+YF +YGD+ + +VM++ TT R RGFGFV F+DP+ +D+
Sbjct: 26 NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85
Query: 63 VL-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP-PT 120
VL Q H LDG+ V+ K A R KKIFVGGL PT
Sbjct: 86 VLTQGTHELDGKKVDPKVAFPRRAHP----------------KMVTRTKKIFVGGLSAPT 129
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
ED + YFE +G + D ++M+D+ T R RGFGF++F +ED VD+V + FH++N K V
Sbjct: 130 TLED-VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMV 188
Query: 181 EVKRALPKD 189
E K+A PK+
Sbjct: 189 ECKKAQPKE 197
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + + R YF YG +++ ++M D T+R RGFGF++F ++VD+VL +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+GK+V+ K A P+ A+P
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHP 111
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 87/188 (46%), Positives = 122/188 (64%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP-TL 121
L Q H LD +T++ K A R Q KKIFVGGL T+
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTV 122
Query: 122 TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVE 181
ED +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Query: 182 VKRALPKD 189
K+A PK+
Sbjct: 182 CKKAQPKE 189
Score = 178 (67.7 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQP 103
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 87/188 (46%), Positives = 122/188 (64%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP-TL 121
L Q H LD +T++ K A R Q KKIFVGGL T+
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTV 122
Query: 122 TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVE 181
ED +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Query: 182 VKRALPKD 189
K+A PK+
Sbjct: 182 CKKAQPKE 189
Score = 178 (67.7 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQP 103
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 255 (94.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 42/84 (50%), Positives = 65/84 (77%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
+ GK+FIGG++WET+++ L+EYFSQ+G+V + VMR+ TGR RGFGF+ F DP ++ V
Sbjct: 108 EDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTV 167
Query: 64 LQDKHSLDGRTVEAKRAMSREEQQ 87
+ +H LDG+ ++ KRA+ R+EQ+
Sbjct: 168 MVKEHYLDGKIIDPKRAIPRDEQE 191
Score = 198 (74.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 38/78 (48%), Positives = 53/78 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+ TE F+Q+F +G V D +M D++T RPRGFGF++FD+E AV+ L +
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 171 TFHDLNGKQVEVKRALPK 188
L GK +EVK+A P+
Sbjct: 255 PLEIL-GKTIEVKKAQPR 271
Score = 176 (67.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S E +E+ +++F Q+G V+ +M +K TGRPRGFGFV F + ++ L
Sbjct: 195 KIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALSR 254
Query: 67 KHSLDGRTVEAKRAMSR 83
+ G+T+E K+A R
Sbjct: 255 PLEILGKTIEVKKAQPR 271
Score = 165 (63.1 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ ++YF +G V + +M D T R RGFGF++F V+ V+ K
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 171 TFHDLNGKQVEVKRALPKD 189
H L+GK ++ KRA+P+D
Sbjct: 171 E-HYLDGKIIDPKRAIPRD 188
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
Identities = 86/188 (45%), Positives = 121/188 (64%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FAD + +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP-TL 121
L Q H LD +T++ K A R Q KKIFVGGL T+
Sbjct: 79 LAQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTV 122
Query: 122 TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVE 181
ED +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE 181
Query: 182 VKRALPKD 189
K+A PK+
Sbjct: 182 CKKAQPKE 189
Score = 179 (68.1 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQP 103
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 82/187 (43%), Positives = 118/187 (63%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YF ++G++ + +VMR+ TT R RGFGF+ FAD S +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q H LD +T++ K A R Q KKIFVGGL +
Sbjct: 79 LAQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSASTV 122
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEIHFHEINNKMVEC 182
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 183 KKAQPKE 189
Score = 177 (67.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGFI+F +VD+VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 82 PHHELDSKTIDPKVAFPRRAQP 103
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 84/184 (45%), Positives = 119/184 (64%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-QD 66
+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+VL Q
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP-TLTEDG 125
H LD +T++ K A R Q KKIFVGGL T+ ED
Sbjct: 61 HHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTVVED- 103
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
+QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE K+A
Sbjct: 104 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 163
Query: 186 LPKD 189
PK+
Sbjct: 164 QPKE 167
Score = 173 (66.0 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 172 FHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 61 HHELDSKTIDPKVAFPRRAQP 81
Score = 167 (63.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T E +++YF Q+G V ++M +KTT R RGFGFV F + ++++V +
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 149 HFHEINNKMVECKKAQPKE 167
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 83/187 (44%), Positives = 118/187 (63%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 239 (89.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 40/86 (46%), Positives = 65/86 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YFS++G+V+ + + TGR RGFGF++F + +D
Sbjct: 41 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVD 100
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
RVLQ K H LDGR ++ KRAM+ +++
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKE 126
Score = 188 (71.2 bits), Expect = 4.3e-14, P = 4.3e-14
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F D+VDRVLQ+
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+Q++ KRA+ P
Sbjct: 106 KEHRLDGRQIDPKRAMAIKKEP 127
Score = 186 (70.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF ++G + + + D T + RGF FI+F E AV ++L+
Sbjct: 129 KKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILE 188
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ G + E+K A PK+
Sbjct: 189 KKYHNVCGSKCEIKIAQPKE 208
Score = 152 (58.6 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 31/88 (35%), Positives = 54/88 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ ET+EE++REYF +G++ + + T + RGF F+ F + + ++L+
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQF A
Sbjct: 190 KYHNVCGSKCEIKIAQPKEIYQQQQFGA 217
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 82/184 (44%), Positives = 117/184 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-Q 65
K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+VL Q
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 66 DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+H LD +T++ K A R Q KKIFVGGL T +
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTTVED 104
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
+QYFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE K+A
Sbjct: 105 VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 164
Query: 186 LPKD 189
PK+
Sbjct: 165 QPKE 168
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQP 82
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/187 (43%), Positives = 117/187 (62%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/187 (43%), Positives = 117/187 (62%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 82/187 (43%), Positives = 117/187 (62%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 82/187 (43%), Positives = 117/187 (62%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE + V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 187 (70.9 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R+YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
+ H+L+ K ++ K A P+ A P
Sbjct: 81 SRHELDSKTIDPKVAFPRRAQP 102
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 238 (88.8 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 40/86 (46%), Positives = 62/86 (72%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
+ + K+FIGG++W+T+E+ LREYF +YG V +M++ TGR RGFGF+ F PS +
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQ 86
D V++ +H LDG+ ++ KRA+ R+EQ
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQ 239
Score = 206 (77.6 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 42/79 (53%), Positives = 55/79 (69%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL TED R+YF YG VTD+ IM D T R RGFGF+SF+ +VD V+ K
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV-K 218
Query: 171 TFHDLNGKQVEVKRALPKD 189
T H L+GK ++ KRA+P+D
Sbjct: 219 TQHILDGKVIDPKRAIPRD 237
Score = 194 (73.4 bits), Expect = 2.5e-37, Sum P(2) = 2.5e-37
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+ P + F ++F +G + D +M D++T + RGFGF+++D+ DAVDRV Q
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 171 TFHDLNGKQVEVKRALPK 188
F D +++E+KRA P+
Sbjct: 304 KFIDFKDRKIEIKRAEPR 321
Score = 172 (65.6 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 35/86 (40%), Positives = 51/86 (59%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GK+F+GGI + + E+FSQ+G ++ +M +K TG+ RGFGFV + +DRV Q
Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 302
Query: 66 DKH-SLDGRTVEAKRAMSREEQQFSA 90
+K R +E KRA R QQ S+
Sbjct: 303 NKFIDFKDRKIEIKRAEPRHMQQKSS 328
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 233 (87.1 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 38/81 (46%), Positives = 61/81 (75%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K FIGG+SW+T+EE L +F +YG+++ +M++ TGR RGFGF+ F D +D +L+D
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 67 KHSLDGRTVEAKRAMSREEQQ 87
+H LDG+ ++ KRA+S+E+Q+
Sbjct: 223 RHVLDGKLIDPKRAISKEDQE 243
Score = 196 (74.1 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 36/78 (46%), Positives = 53/78 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+ P +TE+ F +F +G + D +M D++T R RGFGF+++D+ AVD+V
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 171 TFHDLNGKQVEVKRALPK 188
+ L GK +EVKRA P+
Sbjct: 307 KYLTLKGKAMEVKRAAPR 324
Score = 178 (67.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GK+F+GGI +EE +FSQ+G ++ +M +K TGR RGFGFV + P+ +D+V
Sbjct: 246 GKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCV 305
Query: 66 DKH-SLDGRTVEAKRAMSR 83
+K+ +L G+ +E KRA R
Sbjct: 306 NKYLTLKGKAMEVKRAAPR 324
Score = 170 (64.9 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 34/80 (42%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K F+GGL TE+ +F+ YG++ D IM D T R RGFGF++F+ +VD +L
Sbjct: 162 RKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALL- 220
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K H L+GK ++ KRA+ K+
Sbjct: 221 KDRHVLDGKLIDPKRAISKE 240
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 228 (85.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 37/85 (43%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 188 (71.2 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F ED V +VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
Score = 162 (62.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF Q+G++ + + + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 247
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 228 (85.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 37/85 (43%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 84 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 143
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 144 KVLDQKEHRLDGRVIDPKKAMAMKK 168
Score = 188 (71.2 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F ED V +VL+
Sbjct: 172 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 232 KKFHTVSGSKCEIKVAQPKE 251
Score = 162 (62.1 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 149 KEHRLDGRVIDPKKAMAMKKDP 170
Score = 142 (55.0 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF Q+G++ + + + RGF F+ F + + +VL+
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 232
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 233 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 260
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 228 (85.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 37/85 (43%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 70 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 129
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 130 KVLDQKEHRLDGRVIDPKKAMAMKK 154
Score = 188 (71.2 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F ED V +VL+
Sbjct: 158 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 218 KKFHTVSGSKCEIKVAQPKE 237
Score = 162 (62.1 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 135 KEHRLDGRVIDPKKAMAMKKDP 156
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF Q+G++ + + + RGF F+ F + + +VL+
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 218
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 219 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 246
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 228 (85.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 37/85 (43%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 188 (71.2 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F ED V +VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
Score = 162 (62.1 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF Q+G++ + + + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 247
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 228 (85.3 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 37/85 (43%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKK 155
Score = 188 (71.2 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 36/80 (45%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F ED V +VL+
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 219 KKFHTVSGSKCEIKVAQPKE 238
Score = 162 (62.1 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 136 KEHRLDGRVIDPKKAMAMKKDP 157
Score = 142 (55.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF Q+G++ + + + RGF F+ F + + +VL+
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 220 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 247
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 79/187 (42%), Positives = 118/187 (63%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E L++YF ++G+V +++VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q KKIFVGGL T
Sbjct: 78 LAQTRHELDSKTIDPKVAFPRRAQP----------------KLVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYF+ +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 122 IEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKD 189
K+A PK+
Sbjct: 182 KKAQPKE 188
Score = 183 (69.5 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G + YF +G V + ++M D T+R RGFGF++F + VD+VL +
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ 80
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
T H+L+ K ++ K A P+ A P
Sbjct: 81 TRHELDSKTIDPKVAFPRRAQP 102
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 225 (84.3 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 36/85 (42%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVE 125
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 187 (70.9 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 35/80 (43%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + + RGF FI+F E+ V +VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 214 KKFHTISGSKCEIKVAQPKE 233
Score = 160 (61.4 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
Score = 144 (55.7 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 28/88 (31%), Positives = 54/88 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + + + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 215 KFHTISGSKCEIKVAQPKEVYQQQQYGS 242
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 212 (79.7 bits), Expect = 9.5e-37, Sum P(2) = 9.5e-37
Identities = 35/80 (43%), Positives = 60/80 (75%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+SW+TS++ L++YF+++G+V + + TGR RGFGF++F D +D+VL+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H LDGR ++ K+AM+ ++
Sbjct: 125 KEHRLDGRLIDPKKAMAMKK 144
Score = 200 (75.5 bits), Expect = 9.5e-37, Sum P(2) = 9.5e-37
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P ED R+YFE +G + + + D T + RGF FI+F ED V ++L+
Sbjct: 148 KKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH+++G + E+K A PK+
Sbjct: 208 KKFHNVSGSKCEIKIAQPKE 227
Score = 168 (64.2 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V+D I D NT R RGFGFI F ++VD+VL+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 125 KEHRLDGRLIDPKKAMAMKKDP 146
Score = 139 (54.0 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 27/85 (31%), Positives = 51/85 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E E+++REYF +G++ + + T + RGF F+ F + + ++L+
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEK 208
Query: 67 K-HSLDGRTVEAKRAMSRE--EQQF 88
K H++ G E K A +E +QQ+
Sbjct: 209 KFHNVSGSKCEIKIAQPKEVYQQQY 233
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 214 (80.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 34/80 (42%), Positives = 61/80 (76%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+SW+TS++ L++YF+++G+V + + TGR RGFGF++F +P +++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H LDGR ++ K+AM+ ++
Sbjct: 61 KEHRLDGRLIDPKKAMAMKK 80
Score = 196 (74.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FI+F ED V +VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH+++G + E+K A PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
Score = 167 (63.8 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G VTD I D NT R RGFGFI F +V++VL++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP 82
Score = 154 (59.3 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + T + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQFS+
Sbjct: 145 KFHNVSGSKCEIKVAQPKEVYQQQQFSS 172
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 214 (80.4 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 34/80 (42%), Positives = 61/80 (76%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+SW+TS++ L++YF+++G+V + + TGR RGFGF++F +P +++VL+
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H LDGR ++ K+AM+ ++
Sbjct: 61 KEHRLDGRLIDPKKAMAMKK 80
Score = 196 (74.1 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FI+F ED V +VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH+++G + E+K A PK+
Sbjct: 144 KKFHNVSGSKCEIKVAQPKE 163
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G VTD I D NT R RGFGFI F +V++VL++
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 61 KEHRLDGRLIDPKKAMAMKKDP 82
Score = 154 (59.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 31/88 (35%), Positives = 55/88 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + T + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEK 144
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQFS+
Sbjct: 145 KFHNVSGSKCEIKVAQPKEVYQQQQFSS 172
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 225 (84.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 36/85 (42%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 184 (69.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F E+ V +VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 159 (61.0 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 225 (84.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 36/85 (42%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 184 (69.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F E+ V +VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 159 (61.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
Score = 141 (54.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 225 (84.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 36/85 (42%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 66 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 125
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 126 KVLDQKEHRLDGRVIDPKKAMAMKK 150
Score = 184 (69.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 35/80 (43%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + RGF FI+F E+ V +VL+
Sbjct: 154 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 214 KKFHTVSGSKCEIKVAQPKE 233
Score = 159 (61.0 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 131 KEHRLDGRVIDPKKAMAMKKDP 152
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 28/88 (31%), Positives = 53/88 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + + RGF F+ F + + +VL+
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 218 (81.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 35/85 (41%), Positives = 63/85 (74%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + TGR +GFGF++F D + ++
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVE 119
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 120 KVLDQKEHRLDGRVIDPKKAMAMKK 144
Score = 191 (72.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D T + RGF FI+F E+ V +VL+
Sbjct: 148 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K FH ++G + E+K A PK+
Sbjct: 208 KKFHTISGSKCEIKVAQPKE 227
Score = 148 (57.2 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/88 (32%), Positives = 54/88 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + T + RGF F+ F + + +VL+
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK 208
Query: 67 K-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 209 KFHTISGSKCEIKVAQPKEVYQQQQYGS 236
Score = 147 (56.8 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I NT R +GFGFI F +V++VL +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 125 KEHRLDGRVIDPKKAMAMKKDP 146
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 236 (88.1 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 39/86 (45%), Positives = 66/86 (76%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YFS++G+V + + TGR RGFGF++F +PS +D
Sbjct: 91 EEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVD 150
Query: 62 RVL-QDKHSLDGRTVEAKRAMSREEQ 86
+VL Q +H LDGR ++ K+AM+ +++
Sbjct: 151 KVLAQKEHRLDGRQIDPKKAMAMKKE 176
Score = 175 (66.7 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G VTD I D NT R RGFGFI F VD+VL +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+Q++ K+A+ P
Sbjct: 156 KEHRLDGRQIDPKKAMAMKKEP 177
Score = 174 (66.3 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF A+G + + + D + + RGF FI+F E+AV ++L+
Sbjct: 179 KKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILE 238
Query: 170 KTFH------DLNGKQ--VEVKRALPKD 189
K +H D +GK+ E+K A PK+
Sbjct: 239 KKYHNVSGTKDTSGKEGLCEIKIAQPKE 266
Score = 133 (51.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 23/67 (34%), Positives = 44/67 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ ET+EER+REYF +G++ + + + + RGF F+ F + + ++L+
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 67 K-HSLDG 72
K H++ G
Sbjct: 240 KYHNVSG 246
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 225 (84.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 36/85 (42%), Positives = 64/85 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREE 85
+VL K H LDGR ++ K+AM+ ++
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAMAMKK 149
Score = 176 (67.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 35/81 (43%), Positives = 52/81 (64%)
Query: 110 KKIFVGGL-PPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168
KKIFVGGL P + TE+ R+YF +G + + + D + RGF FI+F E+ V +VL
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 169 QKTFHDLNGKQVEVKRALPKD 189
+K FH ++G + E+K A PK+
Sbjct: 213 EKKFHTVSGSKCEIKVAQPKE 233
Score = 159 (61.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDP 151
Score = 133 (51.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 28/89 (31%), Positives = 54/89 (60%)
Query: 7 KLFIGGISWET-SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
K+F+GG++ E+ +EE++REYF ++G++ + + + RGF F+ F + + +VL+
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 66 DK-HSLDGRTVEAKRAMSRE---EQQFSA 90
K H++ G E K A +E +QQ+ +
Sbjct: 214 KKFHTVSGSKCEIKVAQPKEVYQQQQYGS 242
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 74/184 (40%), Positives = 114/184 (61%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GK+FIGG+ +T+ ++F +YG++ +V+MR++ TG+PRGFGF+ FADPS++D+V++
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
D H ++G+ VE KR + + KKIFVGG+P T+TED
Sbjct: 79 DTHVINGKQVEIKRTIPK--------------GAGGNQSKDIKTKKIFVGGIPSTVTEDE 124
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK-TFHDLNGKQVEVKR 184
+ +F YG+V + ++ D T R RGFGF+ FD+E+ VD +L K D+ QVE+K+
Sbjct: 125 LKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKK 184
Query: 185 ALPK 188
A PK
Sbjct: 185 AEPK 188
Score = 216 (81.1 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIF+GGL T F ++F YG +TD VIM D++T +PRGFGFI+F VD+V++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 171 TFHDLNGKQVEVKRALPKDA 190
T H +NGKQVE+KR +PK A
Sbjct: 80 T-HVINGKQVEIKRTIPKGA 98
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 218 (81.8 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 39/78 (50%), Positives = 57/78 (73%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L +Y S++G+VL + + TGR RGFGFV+F D +DRV
Sbjct: 28 DDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRV 87
Query: 64 LQ-DKHSLDGRTVEAKRA 80
L+ +H LDG+ ++ KRA
Sbjct: 88 LELTEHKLDGKLIDPKRA 105
Score = 178 (67.7 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +TE+ R+YF YG + + + D T RGF F++F E+ V ++L+
Sbjct: 115 KKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLE 174
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 175 NRYHQIGSGKCEIKVAQPKE 194
Score = 155 (59.6 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ Y +G V D I D T R RGFGF+ F ++VDRVL+
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 171 TFHDLNGKQVEVKRA 185
T H L+GK ++ KRA
Sbjct: 91 TEHKLDGKLIDPKRA 105
Score = 131 (51.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S + +EE+LREYF YG++ + + T RGF FV FA + ++L++
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 176 RYHQIGSGKCEIKVAQPKE 194
Score = 37 (18.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 142 MYDQNTQRPRGFG 154
+Y Q R RGFG
Sbjct: 195 VYRQQQNRDRGFG 207
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 355 (130.0 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 74/184 (40%), Positives = 111/184 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KK+FVGG+ E+
Sbjct: 99 RPHKVDGRAVEPKRAVSREDSSKPGAHSTV--------------KKMFVGGIKEDTDEEH 144
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF +G + +V IM ++N+ + RGF FI+FD DAVDR++ + +H +NG EV++A
Sbjct: 145 LREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKA 204
Query: 186 LPKD 189
L ++
Sbjct: 205 LSRE 208
Score = 195 (73.7 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T EE LREYF Q+G + + +M EK + + RGF F+ F D +DR V+Q
Sbjct: 130 KMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+SREE
Sbjct: 190 KYHTVNGHNCEVRKALSREE 209
Score = 179 (68.1 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ + VD +
Sbjct: 38 RKLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMD 97
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 98 ARPHKVDGRAVEPKRAVSRE 117
Score = 39 (18.8 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 295 NTGYASGPPGAPRSSWGTQ 313
N GY SG G +G Q
Sbjct: 286 NRGYGSGGGGGGGGGYGNQ 304
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 352 (129.0 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 70/183 (38%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+ + T++E L+ +F ++G+++ VVM++ T R RGFGF+ ++ S++D +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+ R++ KK+FVG L E
Sbjct: 92 RPHKIDGRVVEPKRAVPRQD--------------IDSPNAGATVKKLFVGALKDDHDEQS 137
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF+ +G++ D+ I+ D+ T + RGF F+ FD D VD+V+ + H LNGK V+VK+A
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197
Query: 186 LPK 188
LPK
Sbjct: 198 LPK 200
Score = 181 (68.8 bits), Expect = 9.6e-14, Sum P(2) = 9.6e-14
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ + +FE +G++ DVV+M D T+R RGFGFI++ +D +
Sbjct: 31 RKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK 90
Query: 170 KTFHDLNGKQVEVKRALPK 188
H ++G+ VE KRA+P+
Sbjct: 91 SRPHKIDGRVVEPKRAVPR 109
Score = 168 (64.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 30/82 (36%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
KLF+G + + E+ +R+YF +G+++ ++ +K TG+ RGF FV F D +D+V LQ
Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
+H L+G+ V+ K+A+ ++ Q
Sbjct: 183 KQHQLNGKMVDVKKALPKQNDQ 204
Score = 41 (19.5 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 226 GRMESNRYMQPQNPGSGF 243
G +NR MQP G GF
Sbjct: 323 GNFNNNR-MQPYQGGGGF 339
Score = 37 (18.1 bits), Expect = 2.1e-34, Sum P(2) = 2.1e-34
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 297 GYASGPPGAPRSSWGTQTP 315
G G G +SWG P
Sbjct: 265 GGGGGGYGGGNNSWGNNNP 283
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 75/192 (39%), Positives = 122/192 (63%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
+DS GK+F+GG++ ET+ ++F +YG++ +V+M+++ TG+PRGFGFV +AD S++
Sbjct: 38 VDS-AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVV 96
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
D+V+QD H + G+ VE KR + R + KKIFVGG+P +
Sbjct: 97 DKVIQDNHIIIGKQVEIKRTIPRGSMSSN----------------DFKTKKIFVGGIPSS 140
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFH-DLNGKQ 179
+ +D F+++F +G + + IM D +T R RGFGF+++++ED VD +L K +L+G Q
Sbjct: 141 VDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQ 200
Query: 180 VEVKRALPKDAN 191
VE+K+A PK N
Sbjct: 201 VEIKKAEPKKPN 212
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 218 (81.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 36/87 (41%), Positives = 64/87 (73%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D+GK+FIGG+SW+T+++ L++YFS++GDV+ + + TGR RGFGFV+F + +D
Sbjct: 72 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 131
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQQ 87
+V+ K H L+G+ ++ KRA + + ++
Sbjct: 132 KVMDQKEHKLNGKVIDPKRAKAMKTKE 158
Score = 171 (65.3 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 161 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 220
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 221 KKYHNVGLSKCEIKVAMSKE 240
Score = 163 (62.4 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 137 KEHKLNGKVIDPKRA 151
Score = 148 (57.2 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 222 KYHNVGLSKCEIKVAMSKEQYQ 243
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 218 (81.8 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 86
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 87 LELKEHKLDGKLIDPKRA 104
Score = 168 (64.2 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 174 SRYHQIGSGKCEIKVAQPKE 193
Score = 145 (56.1 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 90 KEHKLDGKLIDPKRA 104
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 175 RYHQIGSGKCEIKVAQPKE 193
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 214 (80.4 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 35/87 (40%), Positives = 64/87 (73%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D+GK+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D
Sbjct: 41 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 100
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQQ 87
+V+ K H L+G+ ++ KRA + + ++
Sbjct: 101 KVMDQKEHKLNGKVIDPKRAKAMKTKE 127
Score = 171 (65.3 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 130 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 189
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 190 KKYHNVGLSKCEIKVAMSKE 209
Score = 164 (62.8 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 106 KEHKLNGKVIDPKRA 120
Score = 148 (57.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 191 KYHNVGLSKCEIKVAMSKEQYQ 212
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 203 (76.5 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 31/87 (35%), Positives = 65/87 (74%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D+GK+F+GG+SW+T+++ L++YF+++G+V+ + + TGR RGFGFV+F + ++
Sbjct: 50 EEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVE 109
Query: 62 RVL-QDKHSLDGRTVEAKRAMSREEQQ 87
+V+ Q +H L+G+ ++ K+A + + ++
Sbjct: 110 KVITQKEHKLNGKVIDPKKAKAMKTKE 136
Score = 181 (68.8 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 33/80 (41%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF+AYG V + + + T + RGF FI+F E+ V ++++
Sbjct: 139 KKIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + EVK A+ K+
Sbjct: 199 KKYHNIGLSKCEVKVAMSKE 218
Score = 158 (60.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF YG+V + E T + RGF F+ F + + ++++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK 199
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 200 KYHNIGLSKCEVKVAMSKEQYQ 221
Score = 155 (59.6 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL T+ + YF +G V D + D T R RGFGF+ F ++V++V+ +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ K+A
Sbjct: 115 KEHKLNGKVIDPKKA 129
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 214 (80.4 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 38/78 (48%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +++V
Sbjct: 28 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV 87
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 88 LELKEHKLDGKLIDPKRA 105
Score = 168 (64.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 175 SRYHQIGSGKCEIKVAQPKE 194
Score = 141 (54.7 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +V++VL+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 91 KEHKLDGKLIDPKRA 105
Score = 132 (51.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 176 RYHQIGSGKCEIKVAQPKE 194
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 371 (135.7 bits), Expect = 1.4e-33, P = 1.4e-33
Identities = 73/190 (38%), Positives = 114/190 (60%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
D GKLF+GG+SW+TS ++L+EYF+ +G V ++M++ T R RGFGF+ F +P ++
Sbjct: 199 DPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVE 258
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPT 120
+VL+ H+LDG+ ++ K A + + KKIFVGG+
Sbjct: 259 KVLKVPIHTLDGKKIDPKHATPKNRPR-----------------QANKTKKIFVGGVSQD 301
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
+ + + YF +G V + V++ DQ T+R RGFGF++F+ ED VDRV + FH + K+V
Sbjct: 302 TSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKV 361
Query: 181 EVKRALPKDA 190
E K+A PK+A
Sbjct: 362 ECKKAQPKEA 371
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 214 (80.4 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 38/78 (48%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +++V
Sbjct: 64 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV 123
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 124 LELKEHKLDGKLIDPKRA 141
Score = 168 (64.2 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 151 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 211 SRYHQIGSGKCEIKVAQPKE 230
Score = 141 (54.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +V++VL+
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 127 KEHKLDGKLIDPKRA 141
Score = 132 (51.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 212 RYHQIGSGKCEIKVAQPKE 230
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 218 (81.8 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 206 LELKEHKLDGKLIDPKRA 223
Score = 168 (64.2 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 218 (81.8 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 206 LELKEHKLDGKLIDPKRA 223
Score = 168 (64.2 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 218 (81.8 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 39/78 (50%), Positives = 58/78 (74%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 64 LQDK-HSLDGRTVEAKRA 80
L+ K H LDG+ ++ KRA
Sbjct: 206 LELKEHKLDGKLIDPKRA 223
Score = 168 (64.2 bits), Expect = 5.9e-33, Sum P(2) = 5.9e-33
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 293 SRYHQIGSGKCEIKVAQPKE 312
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 209 KEHKLDGKLIDPKRA 223
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 294 RYHQIGSGKCEIKVAQPKE 312
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 204 (76.9 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 34/85 (40%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++GDV+ + + TGR RGFGFV+F + +D+V
Sbjct: 93 EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKE 177
Score = 171 (65.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 163 (62.4 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 148 (57.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQ 262
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 212 (79.7 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 34/80 (42%), Positives = 61/80 (76%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + +++VL
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H LDGR ++ K+AM+ ++
Sbjct: 61 KEHRLDGRVIDPKKAMAMKK 80
Score = 162 (62.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 30/70 (42%), Positives = 45/70 (64%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P TE+ R+YF +G + + + D + + RGF FI+F E+ V +VL+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 170 KTFHDLNGKQ 179
K FH ++G +
Sbjct: 144 KKFHTISGSK 153
Score = 159 (61.0 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H L+G+ ++ K+A+ +P
Sbjct: 61 KEHRLDGRVIDPKKAMAMKKDP 82
Score = 128 (50.1 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 22/67 (32%), Positives = 44/67 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ E +EE++REYF ++G++ + + + + RGF F+ F + + +VL+
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEK 144
Query: 67 K-HSLDG 72
K H++ G
Sbjct: 145 KFHTISG 151
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK 188
L +
Sbjct: 176 LSR 178
Score = 192 (72.6 bits), Expect = 8.0e-15, P = 8.0e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 161 KYHTINGHNAEVRKALSRQEMQ 182
Score = 176 (67.0 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 69 ARPHSIDGRVVEPKRAVARE 88
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 192 (72.6 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 192 (72.6 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 192 (72.6 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 81 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 126
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 127 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 186
Query: 186 LPK 188
L +
Sbjct: 187 LSR 189
Score = 192 (72.6 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 172 KYHTINGHNAEVRKALSRQEMQ 193
Score = 176 (67.0 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 80 ARPHSIDGRVVEPKRAVARE 99
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 74/183 (40%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 81 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 126
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 127 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 186
Query: 186 LPK 188
L +
Sbjct: 187 LSR 189
Score = 192 (72.6 bits), Expect = 9.1e-15, P = 9.1e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 172 KYHTINGHNAEVRKALSRQEMQ 193
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 20 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 79
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 80 ARPHSIDGRVVEPKRAVARE 99
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 198 (74.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 33/82 (40%), Positives = 60/82 (73%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V+
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H L+G+ ++ KRA + + ++
Sbjct: 61 KEHKLNGKVIDPKRAKAMKTKE 82
Score = 175 (66.7 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF A+G V + + D T + RGF FI+F E+ V ++++
Sbjct: 85 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 144
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 145 KKYHNVGLSKCEIKVAMSKE 164
Score = 164 (62.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 146 KYHNVGLSKCEIKVAMSKEQYQ 167
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 191 (72.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D++ LQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 142 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 184 (69.8 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 35 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
Score = 179 (68.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 187 KYHTVNGHNCEVRKALSKQE 206
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 139
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 140 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 199
Query: 186 LPK 188
L K
Sbjct: 200 LSK 202
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 33 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 92
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 93 ARPHKVDGRVVEPKRAVSRE 112
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 179 (68.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 76/183 (41%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H + G EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 186 LPK 188
LPK
Sbjct: 181 LPK 183
Score = 190 (71.9 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
T H ++G+ VE KRA+ ++
Sbjct: 74 TTPHKVDGRVVEPKRAVSRE 93
Score = 172 (65.6 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H++ G E ++A+ ++E
Sbjct: 166 KYHTVKGHNCEVRKALPKQE 185
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 206 (77.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 37/75 (49%), Positives = 56/75 (74%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HSLDGRTVEAKRA 80
K H LDG+ ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 168 (64.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
Score = 145 (56.1 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 197 RYHQIGSGKCEIKVAQPKE 215
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 206 (77.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 37/75 (49%), Positives = 56/75 (74%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HSLDGRTVEAKRA 80
K H LDG+ ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 168 (64.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 196 SRYHQIGSGKCEIKVAQPKE 215
Score = 145 (56.1 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 30/75 (40%), Positives = 43/75 (57%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 171 TFHDLNGKQVEVKRA 185
H L+GK ++ KRA
Sbjct: 112 KEHKLDGKLIDPKRA 126
Score = 132 (51.5 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 197 RYHQIGSGKCEIKVAQPKE 215
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 75/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG V + I+ D+ + + RGFGF +FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 188 (71.2 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG V ++ ++ +G+ RGFGF F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KYHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 200 (75.5 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 28 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 87
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 88 MDQKEHKLNGKVIDPKRAKAMKTKE 112
Score = 171 (65.3 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 115 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 174
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 175 KKYHNVGLSKCEIKVAMSKE 194
Score = 164 (62.8 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 91 KEHKLNGKVIDPKRA 105
Score = 148 (57.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 176 KYHNVGLSKCEIKVAMSKEQYQ 197
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 200 (75.5 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 171 (65.3 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 164 (62.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 148 (57.2 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQ 264
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 73/183 (39%), Positives = 109/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 77
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H++DGR VE KRA++REE KK+FVGG+ E
Sbjct: 78 RPHTIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 123
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 124 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 183
Query: 186 LPK 188
L +
Sbjct: 184 LSR 186
Score = 192 (72.6 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 169 KYHTINGHNAEVRKALSRQEMQ 190
Score = 175 (66.7 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 17 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 76
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 77 ARPHTIDGRVVEPKRAVARE 96
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 76/183 (41%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LCK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+ ++E
Sbjct: 166 KYHTVNGHNCEVRKALCKQE 185
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 193 (73.0 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 173 KHHTINGHNAEVRKALSRQEMQ 194
Score = 176 (67.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 198 (74.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 33/82 (40%), Positives = 60/82 (73%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V+
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H L+G+ ++ KRA + + ++
Sbjct: 62 KEHKLNGKVIDPKRAKAMKTKE 83
Score = 171 (65.3 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 86 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 145
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 146 KKYHNVGLSKCEIKVAMSKE 165
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 62 KEHKLNGKVIDPKRA 76
Score = 148 (57.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 146
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 147 KYHNVGLSKCEIKVAMSKEQYQ 168
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 204 (76.9 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 34/85 (40%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++GDV+ + + TGR RGFGFV+F + +D+V
Sbjct: 93 EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKE 177
Score = 171 (65.3 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 163 (62.4 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQ 262
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 204 (76.9 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 34/85 (40%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++GDV+ + + TGR RGFGFV+F + +D+V
Sbjct: 93 EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKE 177
Score = 171 (65.3 bits), Expect = 3.2e-32, Sum P(2) = 3.2e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 180 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 240 KKYHNVGLSKCEIKVAMSKE 259
Score = 163 (62.4 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 156 KEHKLNGKVIDPKRA 170
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQ 262
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 193 (73.0 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 32/81 (39%), Positives = 59/81 (72%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V+ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HSLDGRTVEAKRAMSREEQQ 87
H L+G+ ++ KRA + + ++
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKE 81
Score = 175 (66.7 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 32/80 (40%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF A+G V + + D T + RGF FI+F E+ V ++++
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 143
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 144 KKYHNVGLSKCEIKVAMSKE 163
Score = 159 (61.0 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 172 FHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQYQ 166
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 75/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD ++VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 184 (69.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
Score = 180 (68.4 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D + +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNCEVRKALSKQE 185
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+E+ LR +F Q+G + VVMR+ R RGFGFV ++ S +D +
Sbjct: 14 KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTA 73
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSNKPGAHLTV--------------KKIFVGGIKEDTEEYH 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + IM +++T + RGF F++FD D VD+++ + +H +N EV++A
Sbjct: 120 IREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHTINSHNCEVRKA 179
Query: 186 LPK 188
LPK
Sbjct: 180 LPK 182
Score = 177 (67.4 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 32/85 (37%), Positives = 54/85 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E +REYF YG + +M E++TG+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYHIREYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQ 164
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSA 90
K H+++ E ++A+ ++E Q S+
Sbjct: 165 KYHTINSHNCEVRKALPKQEMQSSS 189
Score = 175 (66.7 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TED R +FE +G +TD V+M D +R RGFGF+++ + VD +
Sbjct: 13 RKLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMT 72
Query: 170 KTFHDLNGKQVEVKRALPK-DAN 191
H ++G+ VE KRA+ + D+N
Sbjct: 73 ARPHKVDGRVVEPKRAVSREDSN 95
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 73/183 (39%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 94 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 139
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 140 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 199
Query: 186 LPK 188
L K
Sbjct: 200 LSK 202
Score = 189 (71.6 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LREYF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 125 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 184
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 185 KYHTINGHNCEVKKALSKQEMQ 206
Score = 180 (68.4 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 33 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 92
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 93 ARPHKVDGRVVEPKRAVSRE 112
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 73/183 (39%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 22 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 82 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 128 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 187
Query: 186 LPK 188
L K
Sbjct: 188 LSK 190
Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LREYF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 113 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 172
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 173 KYHTINGHNCEVKKALSKQEMQ 194
Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 21 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHKVDGRVVEPKRAVSRE 100
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 73/183 (39%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 70 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 116 LREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 175
Query: 186 LPK 188
L K
Sbjct: 176 LSK 178
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LREYF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 101 KIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 160
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 161 KYHTINGHNCEVKKALSKQEMQ 182
Score = 180 (68.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 9 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMS 68
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 69 ARPHKVDGRVVEPKRAVSRE 88
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 72/185 (38%), Positives = 118/185 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ T+++ +RE++SQ+G++ +VMR+ TT R RGFGFV F+ + +D ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG+TV+ KRA+ R+++ S K+++V G+ TED
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDKNRSESNVST--------------KRLYVSGVREDHTEDM 129
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDR-VLQKTFHDLNGKQVEVKR 184
+YF YG VT I+ D+ TQ+PRGFGF++FD D+VD+ VLQK+ H +NG + +V++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKS-HMVNGHRCDVRK 188
Query: 185 ALPKD 189
L KD
Sbjct: 189 GLSKD 193
Score = 201 (75.8 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 34/80 (42%), Positives = 56/80 (70%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+KIFVGGL T+D R+++ +G +TD+++M D T+R RGFGF++F + VD ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+ H ++GK V+ KRA+P+D
Sbjct: 83 QRPHIIDGKTVDPKRAVPRD 102
Score = 167 (63.8 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 29/80 (36%), Positives = 54/80 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
+L++ G+ + +E+ L EYF++YG V ++ ++ +K T +PRGFGFV F D +D+ VLQ
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H ++G + ++ +S++E
Sbjct: 175 KSHMVNGHRCDVRKGLSKDE 194
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 72/183 (39%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK 188
L +
Sbjct: 176 LSR 178
Score = 193 (73.0 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF++YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 161 KYHTINGHNAEVRKALSRQEMQ 182
Score = 176 (67.0 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 69 ARPHSIDGRVVEPKRAVARE 88
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 200 (75.5 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 171 (65.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 164 (62.8 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQ 264
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 200 (75.5 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 171 (65.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 164 (62.8 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQ 264
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 200 (75.5 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 171 (65.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 164 (62.8 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQ 264
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 200 (75.5 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 171 (65.3 bits), Expect = 9.9e-32, Sum P(2) = 9.9e-32
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 242 KKYHNVGLSKCEIKVAMSKE 261
Score = 164 (62.8 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 148 (57.2 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQ 264
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 79/183 (43%), Positives = 111/183 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F ++G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ TED
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQ--------------TLDAHLTVKKIFVGGIKEN-TEDH 118
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++QK +H +NG EV++A
Sbjct: 119 LRDYFE-YGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK-YHTVNGHNCEVRKA 176
Query: 186 LPK 188
L K
Sbjct: 177 LSK 179
Score = 168 (64.2 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 30/79 (37%), Positives = 54/79 (68%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI E +E+ LR+YF +YG + +M ++ +G+ RGF FV F D +D+++Q
Sbjct: 105 KIFVGGIK-ENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQK 162
Query: 67 KHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 163 YHTVNGHNCEVRKALSKQE 181
Score = 168 (64.2 bits), Expect = 7.6e-11, P = 7.6e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +T V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 73/171 (42%), Positives = 103/171 (60%)
Query: 20 ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-QDKHSLDGRTVEAK 78
E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+VL Q +H LD +T++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 RAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTD 138
A R Q KKIFVGGL T + + YFE +G V D
Sbjct: 61 VAFPRRAQP----------------KMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDD 104
Query: 139 VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
++M+D+ T R RGFGF++F++ED V++V + FH++N K VE K+A PK+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 167 (63.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T+ E ++ YF Q+G V ++M +KTT R RGFGFV F I+++V +
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 156 (60.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 28/69 (40%), Positives = 46/69 (66%)
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
+G R+YF +G V + ++M D T+R RGFGF++F + VD+VL ++ H+L+ K ++ K
Sbjct: 1 EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 184 RALPKDANP 192
A P+ A P
Sbjct: 61 VAFPRRAQP 69
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 9.8e-12, P = 9.8e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 120 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Query: 186 LPK 188
L K
Sbjct: 180 LSK 182
Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 165 KYHTINGHNCEVKKALSKQEMQ 186
Score = 177 (67.4 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 186 (70.5 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 187 KYHTINGHNCEVKKALSKQEMQ 208
Score = 177 (67.4 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 95 ARPHKVDGRVVEPKRAVSRE 114
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 73
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 74 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 120 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 179
Query: 186 LPK 188
L K
Sbjct: 180 LSK 182
Score = 186 (70.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 105 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 164
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 165 KYHTINGHNCEVKKALSKQEMQ 186
Score = 177 (67.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 72
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 73/171 (42%), Positives = 103/171 (60%)
Query: 20 ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-QDKHSLDGRTVEAK 78
E LREYF Q+G+ + +VMR+ T R RGFGFV F D + +D+VL Q +H LD +T++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 79 RAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTD 138
A R Q KKIFVGGL T + +QYFE +G V D
Sbjct: 61 VAFPRRAQP----------------KMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDD 104
Query: 139 VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
++M+D+ T R RGFGF++F++ED V++V + FH++N K VE K+A PK+
Sbjct: 105 AMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 155
Score = 169 (64.5 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T+ E +++YF Q+G V ++M +KTT R RGFGFV F I+++V +
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 137 HFHEINNKMVECKKAQPKE 155
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 27/69 (39%), Positives = 45/69 (65%)
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
+G R+YF +G + ++M D T+R RGFGF++F + VD+VL ++ H+L+ K ++ K
Sbjct: 1 EGLREYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 60
Query: 184 RALPKDANP 192
A P+ A P
Sbjct: 61 VAFPRRAQP 69
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 72/182 (39%), Positives = 105/182 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ + +
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 74 PHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTGEYNL 119
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+AL
Sbjct: 120 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKAL 179
Query: 187 PK 188
K
Sbjct: 180 SK 181
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 104 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 163
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 164 KYHTINGHNCEVKKALSKQEMQ 185
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++F+ +G +TD V+M D T+R RGFGF+++ E+ VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE-VDAAMC 71
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 72 ARPHKVDGRVVEPKRAVSRE 91
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREES--------------GKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H NG EV++A
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTKNGHNAEVRKA 174
Query: 186 LPK 188
L +
Sbjct: 175 LSR 177
Score = 180 (68.4 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+ +G E ++A+SR+E Q
Sbjct: 160 KYHTKNGHNAEVRKALSRQEMQ 181
Score = 172 (65.6 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 70 RPHSIDGRVVEPKRAVARE 88
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 73/183 (39%), Positives = 107/183 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S+ET++E LR +F ++G + VVMR+ T RPRGFGFV + +D +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVG + E
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGSIKEDTEEHH 113
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 114 LREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 173
Query: 186 LPK 188
L K
Sbjct: 174 LSK 176
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+ GL T++ R +FE +G +TD V+M D NT+RPRGFGF+++ T + VD +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 68 RPHKVDGRVVEPKRAVSRE 86
Score = 172 (65.6 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+G I +T E LREYF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQ 158
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 159 KYHTVNGHNCEVRKALSKQE 178
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 73/183 (39%), Positives = 104/183 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KL IGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D V
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCA 68
Query: 66 DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 69 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 114
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 115 LRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQKYHIINGHNCEVKKA 174
Query: 186 LPK 188
L K
Sbjct: 175 LSK 177
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM + +G+ RGF FV F D +D+++
Sbjct: 100 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVDQ 159
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H ++G E K+A+S++E Q
Sbjct: 160 KYHIINGHNCEVKKALSKQEMQ 181
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+ +GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD +
Sbjct: 8 RKLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAVC 67
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 68 ARPHKVDGRVVEPKRAVSRE 87
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 202 (76.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+++ET++E LR +F Q+G + + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREE 85
+ H +DGR VE +RA+SRE+
Sbjct: 75 RPHKVDGRVVEPERAVSRED 94
Score = 176 (67.0 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 31/80 (38%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +T+ V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE +RA+ ++
Sbjct: 74 ARPHKVDGRVVEPERAVSRE 93
Score = 151 (58.2 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGG+ E R Y E YG + + IM D+ + + RGF F++FD D+VD+++ +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 171 TFHDLNGKQVEVKRALPK 188
+H +N V++AL K
Sbjct: 161 KYHTVNDHNC-VRKALSK 177
Score = 143 (55.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+Y QYG + +M ++ +G+ RGF FV F D +D+++
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H+++ ++A+S++E
Sbjct: 161 KYHTVNDHNC-VRKALSKQE 179
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 72/183 (39%), Positives = 106/183 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LR +F Q+G + VVM++ T R RGFGFV ++ ++ +
Sbjct: 34 KLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMDA 93
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E+
Sbjct: 94 RPHKVDGRLVEPKRAVSREDSS--------------KPFAHTTVKKIFVGGIKDDTEENH 139
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF+ +G + V IM D T RGF F++FD D+VDR++ + +H +NG EV++A
Sbjct: 140 LRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKA 199
Query: 186 LPK 188
L K
Sbjct: 200 LSK 202
Score = 182 (69.1 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R +FE +G +TD V+M D NT+R RGFGF+++ + D V+ +
Sbjct: 33 RKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 93 ARPHKVDGRLVEPKRAVSRE 112
Score = 176 (67.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/80 (41%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF Q+G + +M + TG RGF FV F D +DR V+Q
Sbjct: 125 KIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRIVIQ 184
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 185 KYHTVNGHNCEVRKALSKQE 204
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 70/183 (38%), Positives = 110/183 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S ET+EE L+ Y+ Q+G++ VV+R + + RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR V+ KRA+SRE+ + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVDPKRAVSREKSEKQGSLVNV--------------KKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG + EV +A
Sbjct: 128 LREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQKYHAINGHRAEVGKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 183 (69.5 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
KLF+GGI +T E LREYF +YG + ++ ++ +G+ RGFGFV F D +D++ LQ
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E +A+SR+E +
Sbjct: 173 KYHAINGHRAEVGKALSRQEMK 194
Score = 160 (61.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ + Y++ +G +TD V++ +Q+ RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ V+ KRA+ ++
Sbjct: 81 ARPHSIDGRVVDPKRAVSRE 100
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 194 (73.4 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 35/86 (40%), Positives = 57/86 (66%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D KLF+GG+SWET+E+ LR++F +YG++ V + TGR RGF F+VF + +D+V
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 64 -LQDKHSLDGRTVEAKRAMSREEQQF 88
D+H ++ + V+ K+A +R + F
Sbjct: 114 SAADEHIINSKKVDPKKAKARHGKIF 139
Score = 165 (63.1 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVGGL ++++ + YF +G++ +V + +D+ + +GF FI+FD+E V +L+
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 171 TFHDLNGKQVEVKRALPKDAN 191
+ GK+V+VKRA PK N
Sbjct: 197 PKQKIAGKEVDVKRATPKPEN 217
Score = 148 (57.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+FVGGL TE R +F YG + + + D T R RGF FI F +A+D+V
Sbjct: 56 RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSA 115
Query: 170 KTFHDLNGKQVEVKRA 185
H +N K+V+ K+A
Sbjct: 116 ADEHIINSKKVDPKKA 131
Score = 146 (56.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GK+F+GG++ E S+E ++ YF Q+G++++ + +K + +GF F+ F ++ +L+
Sbjct: 136 GKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLK 195
Query: 66 D-KHSLDGRTVEAKRAMSREEQQ 87
K + G+ V+ KRA + E Q
Sbjct: 196 TPKQKIAGKEVDVKRATPKPENQ 218
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 73/182 (40%), Positives = 106/182 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR +F Q+G VVMR+ T R RG GF+++A +D +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYATVEEVDAAMNA 74
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
+ +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHHL 120
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R YFE YG + + IM D+ + + +GF F++FD D+VD+++ + +H +NG EV++AL
Sbjct: 121 RDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQKYHPVNGHSCEVRKAL 179
Query: 187 PK 188
K
Sbjct: 180 SK 181
Score = 167 (63.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ +GF FV F D +D+ V+Q
Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK-KGFAFVTFDDHDSVDKIVIQ 163
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H ++G + E ++A+S++E
Sbjct: 164 KYHPVNGHSCEVRKALSKQE 183
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 69/181 (38%), Positives = 108/181 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T+EE LR+Y+ Q+G++ VV+R+ + R RG GFV F+ + +D +
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DGR +E +RA+ RE KK+FVGG+ E
Sbjct: 70 RPHSIDGRVLEPRRAIPRE--------------ASGQRGAHWTLKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + I+ D+ + R RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQKYHAINGHHAEVRKA 175
Query: 186 L 186
L
Sbjct: 176 L 176
Score = 181 (68.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 36/82 (43%), Positives = 53/82 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LREYF +YG + ++ ++ +GR RGFGFV F D +D+ VLQ
Sbjct: 101 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTFDDYDPVDKIVLQ 160
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+S E Q
Sbjct: 161 KYHAINGHHAEVRKALSIWEMQ 182
Score = 175 (66.7 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 30/82 (36%), Positives = 55/82 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R+Y++ +G +TD V++ D +QR RG GF++F + VD +
Sbjct: 9 RKLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMA 68
Query: 170 KTFHDLNGKQVEVKRALPKDAN 191
H ++G+ +E +RA+P++A+
Sbjct: 69 ARPHSIDGRVLEPRRAIPREAS 90
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 73/187 (39%), Positives = 108/187 (57%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M+ +Q KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A
Sbjct: 1 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60
Query: 60 LDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
+D + + H ++GR VE KRA+SRE+ Q KKIFVGG+
Sbjct: 61 VDAAMNARPHKVNGRVVEPKRAVSREDSQ--------------RPDAYLTVKKIFVGGIK 106
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
E R YF YG + I+ D+ + + RGF F++FD D+VD+++ + +H +NG
Sbjct: 107 EDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGH 166
Query: 179 QVEVKRA 185
EV++A
Sbjct: 167 NCEVRKA 173
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H +NG+ VE KRA+ ++
Sbjct: 67 ARPHKVNGRVVEPKRAVSRE 86
Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG ++ ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGGIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 158
Query: 66 DKHSLDGRTVEAKRAMSRE 84
H+++G E ++A S +
Sbjct: 159 KYHTVNGHNCEVRKAPSNQ 177
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 68/183 (37%), Positives = 106/183 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+ T+E+ LR Y+ Q+G + VV+R+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ HS+DG+ V+ KRA++REE + KK+FVGG+ E
Sbjct: 82 RPHSVDGKVVDPKRAVAREESEKPGAHLAV--------------KKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV +A
Sbjct: 128 LRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHHAEVGKA 187
Query: 186 LPK 188
L +
Sbjct: 188 LSR 190
Score = 185 (70.2 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E +A+SR+E Q
Sbjct: 173 KYHTINGHHAEVGKALSRQEMQ 194
Score = 167 (63.8 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL TE R Y++ +G +TD V++ D + +R RGFGF++F + VD +
Sbjct: 22 KLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAA 81
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++GK V+ KRA+ ++
Sbjct: 82 RPHSVDGKVVDPKRAVARE 100
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 73/183 (39%), Positives = 106/183 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ + KKIFVG E
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSRRPGAHLTV--------------KKIFVG---EDTEEHH 110
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 111 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 170
Query: 186 LPK 188
L K
Sbjct: 171 LSK 173
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 33/79 (41%), Positives = 53/79 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 68 RPHKVDGRVVEPKRAVSRE 86
Score = 157 (60.3 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+G +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 99 KIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 156 KYHTVNGHNCEVRKALSKQE 175
>UNIPROTKB|G5E5V7 [details] [associations]
symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
export" evidence=IEA] [GO:0045111 "intermediate filament
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
Uniprot:G5E5V7
Length = 319
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 73/183 (39%), Positives = 104/183 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVM + T R RGFGFV + +D +
Sbjct: 24 KLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMNA 82
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 83 RPQKMDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 128
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H NG EV++A
Sbjct: 129 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTGNGHNCEVRKA 188
Query: 186 LPK 188
L K
Sbjct: 189 LSK 191
Score = 174 (66.3 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 114 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 173
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+ +G E ++A+S++E
Sbjct: 174 KYHTGNGHNCEVRKALSKQE 193
Score = 171 (65.3 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 23 RKLFIGGLSFETTDESLRSHFEQWGMLTDCVVM-DPNTKRSRGFGFVTYTTVEEVDAAMN 81
Query: 170 KTFHDLNGKQVEVKRALPKD 189
++G+ VE KRA+ ++
Sbjct: 82 ARPQKMDGRVVEPKRAVSRE 101
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 72/183 (39%), Positives = 102/183 (55%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG S+ET++E LR +F Q G + VVMR+ T R RGFGFV + +D +
Sbjct: 15 KLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KR S+E+ Q KKIF GG+ E
Sbjct: 75 RPHKVDGRVVEPKRTSSKEDSQRPGAHLTV--------------KKIFAGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNWEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 173 (66.0 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 106 KIFAGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 166 KYHTVNGHNWEVRKALSKQE 185
Score = 159 (61.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GG T++ R +F+ G +TD V+M D NT+R RGFGF+++ + VD +
Sbjct: 14 QKLFIGGWSFETTDESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMH 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KR K+
Sbjct: 74 ARPHKVDGRVVEPKRTSSKE 93
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 69/184 (37%), Positives = 109/184 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+ + T+++ L+ +F ++G+++ VVM++ T R RGFGF+ ++ ++D
Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGRTVE KRA+ R+E KK+FVGGL E+
Sbjct: 85 RPHKIDGRTVEPKRAVPRQE--------------IDSPNAGATVKKLFVGGLRDDHDEEC 130
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV-LQKTFHDLNGKQVEVKR 184
R+YF+ +G + V I+ D++T + RGF FI FD D VD++ LQKT H + K ++VK+
Sbjct: 131 LREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKT-HSIKNKTLDVKK 189
Query: 185 ALPK 188
A+ K
Sbjct: 190 AIAK 193
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+DG + +FE +G++ DVV+M D T+R RGFGFI++ +D
Sbjct: 24 RKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
Query: 170 KTFHDLNGKQVEVKRALPK 188
H ++G+ VE KRA+P+
Sbjct: 84 ARPHKIDGRTVEPKRAVPR 102
Score = 172 (65.6 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
KLF+GG+ + EE LREYF +G ++ ++ +K TG+ RGF F+ F D +D++ LQ
Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQ 175
Query: 66 DKHSLDGRTVEAKRAMSREE 85
HS+ +T++ K+A+++++
Sbjct: 176 KTHSIKNKTLDVKKAIAKQD 195
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
Identities = 72/189 (38%), Positives = 105/189 (55%)
Query: 7 KLFIGGISWETSEERLREYFS-------QYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +
Sbjct: 14 KLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEV 73
Query: 60 LDRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
+ H +DGR VE KRA+SRE+ KKIFVGG+
Sbjct: 74 DAAMCARPHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKE 119
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
E R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG
Sbjct: 120 DTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHN 179
Query: 180 VEVKRALPK 188
EVK+AL K
Sbjct: 180 CEVKKALSK 188
Score = 186 (70.5 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++
Sbjct: 111 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 170
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 171 KYHTINGHNCEVKKALSKQEMQ 192
Score = 156 (60.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAY-------GHVTDVVIMYDQNTQRPRGFGFISFDTED 162
+K+F+GGL T+D R++FE + G +TD V+M D T+R RGFGF+++ E+
Sbjct: 13 RKLFIGGLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEE 72
Query: 163 AVDRVLQKTFHDLNGKQVEVKRALPKD 189
VD + H ++G+ VE KRA+ ++
Sbjct: 73 -VDAAMCARPHKVDGRVVEPKRAVSRE 98
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 322 (118.4 bits), Expect = 5.7e-29, P = 5.7e-29
Identities = 69/181 (38%), Positives = 107/181 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG++ T+EE L+ ++ Q+G V+ VVMR+ T R RGFGF+ + ++DR ++
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG+TVEAKRA+ R E++ KK+FVGGL E+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERE--------------SRETNISVKKLFVGGLKDNHDEEC 138
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF +G+V V ++ D+ T + RGF F+ FD DAVD+ + K H + V+VK++
Sbjct: 139 LREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Query: 186 L 186
+
Sbjct: 199 I 199
Score = 190 (71.9 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL P TE+ + ++ +G V DVV+M D T+R RGFGFI++ VDR +
Sbjct: 32 RKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQE 91
Query: 170 KTFHDLNGKQVEVKRALPK 188
H ++GK VE KRALP+
Sbjct: 92 NRPHIIDGKTVEAKRALPR 110
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 73/183 (39%), Positives = 108/183 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV+FA +D +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ + ++GR +E KR +SRE+ Q A KKIFVGG+ TE+
Sbjct: 75 RPNKVNGRVLEPKRFVSREDSQRPAAYLTV--------------KKIFVGGIKED-TEE- 118
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
YFE YG + +M DQ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 119 HEDYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQKYHTVNGHSCEVRKA 178
Query: 186 LPK 188
L K
Sbjct: 179 LLK 181
Score = 157 (60.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+ GL T++ R +FE +G +T V+M D NT+R RGFGF+ F T + VD +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFATVEEVDAAMNA 74
Query: 171 TFHDLNGKQVEVKRALPKD 189
+ +NG+ +E KR + ++
Sbjct: 75 RPNKVNGRVLEPKRFVSRE 93
Score = 144 (55.7 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E +YF QYG VM ++ +G+ RGF FV F + +D+ V+Q
Sbjct: 106 KIFVGGIKEDTEEHE--DYFEQYGKFEVIEVMTDQGSGKKRGFAFVTFDNHDSVDQIVIQ 163
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G + E ++A+ ++E
Sbjct: 164 KYHTVNGHSCEVRKALLKQE 183
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 72/190 (37%), Positives = 106/190 (55%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M+ +Q KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A
Sbjct: 4 MEPEQVRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 63
Query: 60 LDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
+D + + H +DGR VE KRA+S E+ Q KIFVG +
Sbjct: 64 VDAAMNARPHKVDGRVVEPKRAVSIEDSQRPGAYLNM---------------KIFVGAIK 108
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
E R YF YG + I+ D+ + + RGF F++FD D+VD+++ + +H +NG
Sbjct: 109 EDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHTVNGH 168
Query: 179 QVEVKRALPK 188
EV++A K
Sbjct: 169 NCEVRKAPSK 178
Score = 162 (62.1 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+G I +T E LR+YF QYG ++ ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A S++E
Sbjct: 161 KYHTVNGHNCEVRKAPSKQE 180
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 70/178 (39%), Positives = 100/178 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIG +S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ ++GR VE KRA+SRE+ Q KKIFVGG+ TE
Sbjct: 75 RPQKVNGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKED-TEHH 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
R YFE YG + IM D+ + RGF F++FD D+VD+++ + +H +NG E +
Sbjct: 120 LRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCETR 177
Score = 175 (66.7 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+G L T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+NG+ VE KRA+ ++
Sbjct: 74 ARPQKVNGRVVEPKRAVSRE 93
>UNIPROTKB|F1SCL3 [details] [associations]
symbol:LOC100522980 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123190.1 Ensembl:ENSSSCT00000014811 GeneID:100522980
KEGG:ssc:100522980 Uniprot:F1SCL3
Length = 354
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 69/189 (36%), Positives = 108/189 (57%)
Query: 2 DSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
+S+Q KLFIGG+ ET EE LR Y+ Q+G + VV+R+ ++ R RGFGFV+F+ + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 61 DRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
D + + HS+DGR V +KR + REE KK+FVGG+
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREES--------------GKPGACVTTKKLFVGGIKE 121
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
TE R YFE YG + + I+ + + R FGF++FD D VD+++ + +H +NG
Sbjct: 122 DTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHH 179
Query: 180 VEVKRALPK 188
++++AL +
Sbjct: 180 AQLEKALSR 188
Score = 166 (63.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL E+ R Y++ +G +TD V++ D ++QR RGFGF+ F + VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ V KR +P++
Sbjct: 81 ARPHSIDGRVVASKRVVPRE 100
Score = 163 (62.4 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T+E LR+YF +YG + ++R+ +GR FGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G + ++A+SR+ Q
Sbjct: 171 KYHTINGHHAQLEKALSRQGMQ 192
>UNIPROTKB|F1SCM6 [details] [associations]
symbol:LOC100522063 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:CU986279
RefSeq:XP_003123185.1 Ensembl:ENSSSCT00000014807 GeneID:100522063
KEGG:ssc:100522063 Uniprot:F1SCM6
Length = 354
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 69/189 (36%), Positives = 108/189 (57%)
Query: 2 DSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
+S+Q KLFIGG+ ET EE LR Y+ Q+G + VV+R+ ++ R RGFGFV+F+ + +
Sbjct: 16 ESEQFRKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEV 75
Query: 61 DRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
D + + HS+DGR V +KR + REE KK+FVGG+
Sbjct: 76 DAAMAARPHSIDGRVVASKRVVPREES--------------GKPGACVTTKKLFVGGIKE 121
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
TE R YFE YG + + I+ + + R FGF++FD D VD+++ + +H +NG
Sbjct: 122 DTTERHLRDYFERYGTIDAIEII--RQSGRKTAFGFVTFDDHDPVDKIVLQKYHTINGHH 179
Query: 180 VEVKRALPK 188
++++AL +
Sbjct: 180 AQLEKALSR 188
Score = 166 (63.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL E+ R Y++ +G +TD V++ D ++QR RGFGF+ F + VD +
Sbjct: 21 RKLFIGGLCSETKEESLRNYYQQWGKLTDCVVIRDPSSQRSRGFGFVIFSSVAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ V KR +P++
Sbjct: 81 ARPHSIDGRVVASKRVVPRE 100
Score = 163 (62.4 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 33/82 (40%), Positives = 53/82 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T+E LR+YF +YG + ++R+ +GR FGFV F D +D+ VLQ
Sbjct: 113 KLFVGGIKEDTTERHLRDYFERYGTIDAIEIIRQ--SGRKTAFGFVTFDDHDPVDKIVLQ 170
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G + ++A+SR+ Q
Sbjct: 171 KYHTINGHHAQLEKALSRQGMQ 192
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 68/189 (35%), Positives = 104/189 (55%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
M++ KLF+GG++ +T+++ LR +F QYG + VV++ + R R FGFV ++ P
Sbjct: 5 MENQLCKLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEA 64
Query: 61 DRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
D + + H LDG VE KRA++RE+ KKIF+GGL
Sbjct: 65 DSAMSARPHILDGNNVELKRAVARED--------------AGKPEALAKVKKIFIGGLKD 110
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
+ ED R F +G V ++ D+ T + RGFGF+ F+ D+ D+ + FH +NG +
Sbjct: 111 DIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHMINGHK 170
Query: 180 VEVKRALPK 188
VEVK+AL K
Sbjct: 171 VEVKKALTK 179
Score = 180 (68.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL T+DG R +FE YG +TD V++ +Q +R R FGF+++ + D D +
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 171 TFHDLNGKQVEVKRALPKD 189
H L+G VE+KRA+ ++
Sbjct: 71 RPHILDGNNVELKRAVARE 89
Score = 177 (67.4 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 35/82 (42%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+ + E+ LR+ FSQ+G V + V+ +K TG+ RGFGFV F D D+ +
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H ++G VE K+A++++E Q
Sbjct: 162 KFHMINGHKVEVKKALTKQEMQ 183
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 204 (76.9 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMR--EKTTGRPRGFGFVVFADPSIL 60
S GK+F+GG+ +S E L++YFS +G+V +++V++ EK + + RGFGFV F DPS++
Sbjct: 103 SISGKIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKAS-KSRGFGFVTFVDPSVI 161
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREE 85
D V+ HS++G+ VE +RA+ +EE
Sbjct: 162 DEVILINHSIEGKNVEIRRAIPKEE 186
Score = 156 (60.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTD-VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KIFVGGL T + + + YF +G V + +VI + + RGFGF++F +D V+
Sbjct: 107 KIFVGGLLKTSSNEILKDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVIL 166
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H + GK VE++RA+PK+
Sbjct: 167 IN-HSIEGKNVEIRRAIPKE 185
Score = 141 (54.7 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
Identities = 27/76 (35%), Positives = 47/76 (61%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+FVGGLP +T D F YF +G +++ ++ ++N +GFGFI F E + +L
Sbjct: 194 QKLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKNGTI-KGFGFICFKDESVNEIILN 252
Query: 170 KTFHDLNGKQVEVKRA 185
+ H + GK+V+++ A
Sbjct: 253 EQQHIILGKRVDIRIA 268
Score = 126 (49.4 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 25/81 (30%), Positives = 50/81 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + + YFS++G++ + ++ EK G +GFGF+ F D S+ + +L +
Sbjct: 195 KLFVGGLPKHITSDDFNNYFSEFGEISEYNLLTEKN-GTIKGFGFICFKDESVNEIILNE 253
Query: 67 K-HSLDGRTVEAKRAMSREEQ 86
+ H + G+ V+ + A S+ ++
Sbjct: 254 QQHIILGKRVDIRIADSQNKR 274
>UNIPROTKB|F1LYN9 [details] [associations]
symbol:F1LYN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00368496
Ensembl:ENSRNOT00000035403 Uniprot:F1LYN9
Length = 263
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 68/183 (37%), Positives = 102/183 (55%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LR +F Q+ + V+MR+ + R RGFG + +A +D +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE K A+SRE+ KKIFVGG E
Sbjct: 61 RPHKVDGRVVEPKVAVSREDSHRPGAHLTV--------------KKIFVGGSKEDTEEHH 106
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D + + RGF F++FD +D+VD ++ + +H +NG EV++A
Sbjct: 107 LRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQKYHTVNGHNCEVRKA 166
Query: 186 LPK 188
L K
Sbjct: 167 LLK 169
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GG +T E LR YF QYG + +M + +G+ RGF FV F D +D V+Q
Sbjct: 92 KIFVGGSKEDTEEHHLRVYFEQYGKIEVIEIMTDIGSGKKRGFAFVTFDDQDSVDNIVIQ 151
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+ ++E
Sbjct: 152 KYHTVNGHNCEVRKALLKQE 171
Score = 153 (58.9 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ R +FE + +TD V+M D N++R RGFG I++ T + VD +
Sbjct: 1 KLFIGGLSFETTDKSLRSHFEQWETLTDCVLMRDPNSKRSRGFGLIAYATVEEVDAAMNA 60
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G+ VE K A+ ++
Sbjct: 61 RPHKVDGRVVEPKVAVSRE 79
>UNIPROTKB|F1M117 [details] [associations]
symbol:F1M117 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00558412 Ensembl:ENSRNOT00000023321
Uniprot:F1M117
Length = 366
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 73/187 (39%), Positives = 102/187 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F + G + VVMR+ T RGFGFV + +D +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 97 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLMVKKIFVGGIKEDTEEYN 142
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG T+ + ++ RGF F++FD +D VD+++ + H +NG EVKRA
Sbjct: 143 LRDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRA 200
Query: 186 LPKDANP 192
L K P
Sbjct: 201 LSKQEMP 207
Score = 163 (62.4 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE G +TD V+M D T+ RGFGF++ + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 96 ARPHKVDGRVVEPKRAVSRE 115
>UNIPROTKB|F1M5L3 [details] [associations]
symbol:F1M5L3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC128353
EMBL:AC111733 IPI:IPI00358908 Ensembl:ENSRNOT00000041535
Uniprot:F1M5L3
Length = 364
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 73/187 (39%), Positives = 102/187 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F + G + VVMR+ T RGFGFV + +D +
Sbjct: 37 KLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMCA 96
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 97 RPHKVDGRVVEPKRAVSREDS--------------VKPGAHLMVKKIFVGGIKEDTEEYN 142
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG T+ + ++ RGF F++FD +D VD+++ + H +NG EVKRA
Sbjct: 143 LRDYFEKYGK-TETIEGRQAEWEK-RGFAFVTFDDQDTVDKIVVQKHHTINGHNCEVKRA 200
Query: 186 LPKDANP 192
L K P
Sbjct: 201 LSKQEMP 207
Score = 163 (62.4 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE G +TD V+M D T+ RGFGF++ + VD +
Sbjct: 36 RKLFIGGLSFETTDDSLREHFEKRGTLTDCVVMRDPQTKHSRGFGFVTSSCVEEVDAAMC 95
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 96 ARPHKVDGRVVEPKRAVSRE 115
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 71/184 (38%), Positives = 104/184 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFV-VFADPSILDRVLQ 65
KLFIG +S+ET+++ LRE+F ++G L VVMR+ R R FGFV ++ +D +
Sbjct: 19 KLFIGCLSFETTDDSLREHFEKWG-TLDCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAMC 77
Query: 66 DK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTED 124
+ H +DG VE KRA+SRE+ KKIFVGG+ E
Sbjct: 78 ARPHKVDGHVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEY 123
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R YFE YG + + +M D+ + + RGF F++FD D VD+++QK +H +NG EVK+
Sbjct: 124 NLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK-YHTINGHNYEVKK 182
Query: 185 ALPK 188
A+ K
Sbjct: 183 AVSK 186
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++Q
Sbjct: 110 KIFVGGIKEDTEEYNLRDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQK 169
Query: 67 KHSLDGRTVEAKRAMSREEQQ 87
H+++G E K+A+S++E Q
Sbjct: 170 YHTINGHNYEVKKAVSKQEMQ 190
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFIS-FDTEDAVDRVL 168
+K+F+G L T+D R++FE +G + D V+M D +R R FGF+S + VD +
Sbjct: 18 RKLFIGCLSFETTDDSLREHFEKWGTL-DCVVMRDLQIKRSRSFGFVSTYSCVKEVDAAM 76
Query: 169 QKTFHDLNGKQVEVKRALPKD 189
H ++G VE KRA+ ++
Sbjct: 77 CARPHKVDGHVVEPKRAVSRE 97
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 304 (112.1 bits), Expect = 7.8e-27, P = 7.8e-27
Identities = 79/193 (40%), Positives = 108/193 (55%)
Query: 12 GISWETSE----ERLREYFSQYGDVLQTVVMREKTTGRPR--GFGFVVFADPSILDRVL- 64
G SW E E LREYF Q+G+V + +VMR+ T R R GFGFV F D + +D+VL
Sbjct: 109 GPSWSEGECVVTEGLREYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLA 168
Query: 65 QDKHSLDGRTVEA--KRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLT 122
Q +H LD +TV+ K A R Q KKIFVGGL T
Sbjct: 169 QSRHELDSKTVQIDPKVAFPRRAQP--------------KVQMVTRTKKIFVGGLSVNTT 214
Query: 123 EDGFRQYFEAYG--HVTDVVIMYDQNTQRPRG--FGFISFDTEDAVDRVLQKTFHDLNGK 178
+ +QYFE + V D ++M+D+ T R RG FGF++F++ED V++V + FH++N K
Sbjct: 215 VEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEKVCEIHFHEINNK 274
Query: 179 --QVEVKRALPKD 189
QVE K+A PK+
Sbjct: 275 MVQVECKKAQPKE 287
Score = 130 (50.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVL--QTVVMREKTTGRPRG--FGFVVFADPSILDR 62
K+F+GG+S T+ E +++YF Q+ V ++M +KTT R RG FGFV F I+++
Sbjct: 203 KIFVGGLSVNTTVEDVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTFESEDIVEK 262
Query: 63 VLQDK-HSLDGRTV--EAKRAMSRE 84
V + H ++ + V E K+A +E
Sbjct: 263 VCEIHFHEINNKMVQVECKKAQPKE 287
>UNIPROTKB|E2RJI3 [details] [associations]
symbol:LOC608729 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03015120 RefSeq:XP_864182.2
ProteinModelPortal:E2RJI3 Ensembl:ENSCAFT00000015269 GeneID:608729
KEGG:cfa:608729 Uniprot:E2RJI3
Length = 321
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 70/184 (38%), Positives = 101/184 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S +T++E LR + Q G ++ VVMR+ T RGFGF +A +D V+
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q KKIFVGG+ E
Sbjct: 75 RPHKMDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHH 120
Query: 126 FRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
+ YF E Y + + IM D+ + + RGF F++FD D VD+++ + H +NG EV++
Sbjct: 121 LKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVIQKCHPVNGHDHEVRK 180
Query: 185 ALPK 188
AL K
Sbjct: 181 ALSK 184
Score = 157 (60.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+ GL T++ R + E G + D V+M D NT+ RGFGF ++ T + VD V+
Sbjct: 15 KLFIKGLSSKTTDESLRSHCEQQGALMDCVVMRDPNTKHSRGFGFTTYATREDVDAVMNA 74
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 75 RPHKMDGRVVEPKRAVSRE 93
Score = 155 (59.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 30/81 (37%), Positives = 51/81 (62%)
Query: 7 KLFIGGISWETSEERLREYF-SQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VL 64
K+F+GGI +T E L++YF QY + +M ++ +G+ RGF FV F D +D+ V+
Sbjct: 106 KIFVGGIKEDTEEHHLKDYFFEQYEKIEVIEIMTDRGSGKKRGFAFVTFDDHDFVDKIVI 165
Query: 65 QDKHSLDGRTVEAKRAMSREE 85
Q H ++G E ++A+S++E
Sbjct: 166 QKCHPVNGHDHEVRKALSKQE 186
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 69/184 (37%), Positives = 103/184 (55%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIG +S ET+EE L Y+ Q+G + V++R+ + + R FGF+ F+ + LD +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG+ V KRA+ RE+ KK+FVGG+ + E
Sbjct: 82 RPHFIDGKMVMPKRAVPREDH--------------GKLGALITVKKLFVGGITEDMKEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDR-VLQKTFHDLNGKQVEVKR 184
R YFE YG + + I+ D + + RGFGFI+FD D VD+ VLQK H +NG + EV++
Sbjct: 128 LRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKN-HTINGHRAEVRK 186
Query: 185 ALPK 188
AL +
Sbjct: 187 ALSR 190
Score = 184 (69.8 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI+ + E LR+YF +YG + ++ + +G+ RGFGF+ F D +D+ VLQ
Sbjct: 113 KLFVGGITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQ 172
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E+Q
Sbjct: 173 KNHTINGHRAEVRKALSRQERQ 194
Score = 149 (57.5 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+G L TE+ Y+ +G++TD V++ D +Q+ R FGFI+F + +D +
Sbjct: 22 KLFIGDLSSETTEESLWNYYRQWGYLTDCVLIRDPASQKSRRFGFITFSSMAELDAAMAA 81
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++GK V KRA+P++
Sbjct: 82 RPHFIDGKMVMPKRAVPRE 100
Score = 38 (18.4 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 115 GGLPPTLTEDGFRQYFEAYG 134
GG ++GFR ++ YG
Sbjct: 272 GGSADGYQDEGFRACYDNYG 291
>UNIPROTKB|F1LUM4 [details] [associations]
symbol:F1LUM4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00389838
ProteinModelPortal:F1LUM4 Ensembl:ENSRNOT00000031839 Uniprot:F1LUM4
Length = 209
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 66/182 (36%), Positives = 99/182 (54%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD- 66
L IGG+S+ET+++ LRE+ ++G + VVM + T RGFGFV ++ +D +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 61 PHKVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYNL 106
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + H +N EVK+A+
Sbjct: 107 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQEHHAINRHNCEVKKAV 166
Query: 187 PK 188
K
Sbjct: 167 SK 168
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 32/82 (39%), Positives = 54/82 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-Q 65
K+F+GGI +T E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++ Q
Sbjct: 91 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVFQ 150
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
+ H+++ E K+A+S++E Q
Sbjct: 151 EHHAINRHNCEVKKAVSKQEMQ 172
Score = 151 (58.2 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 28/78 (35%), Positives = 48/78 (61%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+ +GGL T+D R++ E +G +TD V+M D T+ RGFGF+++ + VD +
Sbjct: 1 LLIGGLSFETTDDSLREHSEKWGTLTDCVVMTDPQTEHSRGFGFVTYSCVEEVDAAMCAW 60
Query: 172 FHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 61 PHKVDGRVVEPKRAVSRE 78
>UNIPROTKB|E2RF95 [details] [associations]
symbol:E2RF95 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03008728
Ensembl:ENSCAFT00000001067 OMA:CTTATVE Uniprot:E2RF95
Length = 308
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 71/191 (37%), Positives = 102/191 (53%)
Query: 2 DSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI- 59
D +Q KLFIGG+S E + E LR + Q+G + VV R+ T RGFGF+ ++
Sbjct: 9 DPEQLRKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVE 68
Query: 60 -LDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGL 117
+D + + H +DGR VE KRA+SRE+ Q KK FVGG+
Sbjct: 69 EVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKTFVGGI 114
Query: 118 PPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG 177
E R YFE YG + + IM D + + R F F++FD D+VD+++ + +H +NG
Sbjct: 115 KEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQKYHTVNG 173
Query: 178 KQVEVKRALPK 188
EVK+AL K
Sbjct: 174 HNCEVKKALSK 184
Score = 165 (63.1 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K F+GGI +T E LR+YF QYG + +M + +G+ R F FV F D +D+ V+Q
Sbjct: 108 KTFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMIDPGSGK-RSFAFVTFDDHDSVDKIVIQ 166
Query: 66 DKHSLDGRTVEAKRAMSREEQ 86
H+++G E K+A+S++EQ
Sbjct: 167 KYHTVNGHNCEVKKALSKQEQ 187
Score = 150 (57.9 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE--DAVDRV 167
+K+F+GGL +T + R + E +G +TD V+ D NT+ RGFGFI+ T + VD
Sbjct: 14 RKLFIGGLSLEITNESLRSHSEQWGMLTDRVVRRDPNTKGSRGFGFITCTTATVEEVDAA 73
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 74 MNARPHKVDGRVVEPKRAVSRE 95
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 72/191 (37%), Positives = 105/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +T+E LRE+F+ YG + VV+ T R R FGFV ++
Sbjct: 22 MENSQLCKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEE 81
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG +VE KRA+SRE+ SA KK+FVGGL
Sbjct: 82 ADAAMAASPHAVDGNSVELKRAVSRED---SAKPGAHAKV-----------KKLFVGGLK 127
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E Q+F +G V I+ D+ + + RGFGF+ F DA D+ FH + G
Sbjct: 128 GDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGH 187
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 188 RVEVKKAVPKE 198
Score = 155 (59.6 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + E L ++FSQ+G V + ++ +K +G+ RGFGFV F + D+
Sbjct: 120 KLFVGGLKGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 179
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H + G VE K+A+ +E+ Q
Sbjct: 180 KFHPIQGHRVEVKKAVPKEDIQ 201
>UNIPROTKB|F1LW71 [details] [associations]
symbol:F1LW71 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00563710 ProteinModelPortal:F1LW71
Ensembl:ENSRNOT00000048553 Uniprot:F1LW71
Length = 260
Score = 173 (66.0 bits), Expect = 7.0e-26, Sum P(2) = 7.0e-26
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ E R Y E YG + V IM D+ + + GF F++FD D+VD+++
Sbjct: 108 KKIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVI 167
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ +H +NG EV++AL K
Sbjct: 168 QKYHTVNGHNCEVRKALSK 186
Score = 165 (63.1 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+Y QYG + +M ++ +G+ GF FV F D +D+ V+Q
Sbjct: 109 KIFVGGIKEDTEEHHLRDYSEQYGKIEVVEIMTDRGSGKKGGFAFVTFDDHDSVDKIVIQ 168
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 169 KYHTVNGHNCEVRKALSKQE 188
Score = 158 (60.7 bits), Expect = 7.0e-26, Sum P(2) = 7.0e-26
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF GG+++ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +DR +D
Sbjct: 22 KLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDR--KD 79
Query: 67 KHSLDGRTVEAKRAMSREEQQ 87
H+ + RA+SRE+ Q
Sbjct: 80 -HTRWMEELWNLRAVSREDSQ 99
Score = 144 (55.7 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDR 166
+K+F GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ + VDR
Sbjct: 21 RKLFTGGLNFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAPVEEVDR 77
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 71/191 (37%), Positives = 105/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG TVE KRA+SRE+ SA KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLK 106
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E ++F +G V I+ D+ + + RGFGF+ F + DA D+ FH + G
Sbjct: 107 GDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGH 166
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 167 RVEVKKAVPKE 177
Score = 155 (59.6 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 63/183 (34%), Positives = 101/183 (55%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG++ +T+ + LR YF Q+G++ VV++ R R FGFV ++ D +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG+ VE KRA++RE+ KKIFVGGL + E
Sbjct: 69 RPHVVDGKNVEVKRAVARED--------------AGRPEALAKVKKIFVGGLKDDIEEKD 114
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
++F +G + ++ D++T + RGFGF+ F+ D+ D+ + FH +NG +VEVK+A
Sbjct: 115 LTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMINGHKVEVKKA 174
Query: 186 LPK 188
L K
Sbjct: 175 LTK 177
Score = 185 (70.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL T DG R YFE +G++TD V++ + QR R FGF+++ T + D +
Sbjct: 9 KLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAA 68
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++GK VEVKRA+ ++
Sbjct: 69 RPHVVDGKNVEVKRAVARE 87
Score = 169 (64.5 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+ + E+ L E+FSQ+G + ++ V+ +K TG+ RGFGFV F D D+ +
Sbjct: 100 KIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVL 159
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H ++G VE K+A++++E Q
Sbjct: 160 KFHMINGHKVEVKKALTKQEIQ 181
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 63/183 (34%), Positives = 100/183 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG++ +T++E LR +F QYG + VV+ + R R FGFV ++ D +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG V+ KRA++RE+ KKIFVGGL + ++
Sbjct: 67 RPHIVDGNNVDLKRAVARED--------------AGKPEMLAKVKKIFVGGLKDDIEDEH 112
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
+ YF +G + ++ D++T + RGFGF+ FD D+ D+ + FH + G +VEVK+A
Sbjct: 113 LQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFHSICGHKVEVKKA 172
Query: 186 LPK 188
L K
Sbjct: 173 LTK 175
Score = 182 (69.1 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+ + +E L++YFSQ+G + + V+ +K TG+ RGFGFV F D D+ +
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K HS+ G VE K+A++++E Q
Sbjct: 158 KFHSICGHKVEVKKALTKQEMQ 179
Score = 168 (64.2 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL T++G R +FE YG +TD V++ +Q QR R FGF+++ + + D +
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++G V++KRA+ ++
Sbjct: 67 RPHIVDGNNVDLKRAVARE 85
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/191 (37%), Positives = 104/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG TVE KRA+SRE+ SA KK+FVGGL
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLK 111
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E ++F +G V I+ D+ + + RGFGF+ F DA D+ FH + G
Sbjct: 112 GDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGH 171
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 172 RVEVKKAVPKE 182
Score = 157 (60.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F + D+
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 163
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 164 KFHPIQGHRVEVKKAVPKED 183
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/191 (37%), Positives = 104/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG TVE KRA+SRE+ SA KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLK 106
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E ++F +G V I+ D+ + + RGFGF+ F DA D+ FH + G
Sbjct: 107 GDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGH 166
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 167 RVEVKKAVPKE 177
Score = 157 (60.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F + D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/191 (37%), Positives = 104/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++
Sbjct: 1 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG TVE KRA+SRE+ SA KK+FVGGL
Sbjct: 61 ADAAMAASPHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLK 106
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E ++F +G V I+ D+ + + RGFGF+ F DA D+ FH + G
Sbjct: 107 GDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGH 166
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 167 RVEVKKAVPKE 177
Score = 157 (60.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F + D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 71/191 (37%), Positives = 104/191 (54%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M++ Q KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++
Sbjct: 6 MENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 65
Query: 60 LDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
D + H++DG TVE KRA+SRE+ SA KK+FVGGL
Sbjct: 66 ADAAMAASPHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLK 111
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+ E ++F +G V I+ D+ + + RGFGF+ F DA D+ FH + G
Sbjct: 112 GDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGH 171
Query: 179 QVEVKRALPKD 189
+VEVK+A+PK+
Sbjct: 172 RVEVKKAVPKE 182
Score = 157 (60.3 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F + D+
Sbjct: 104 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 163
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 164 KFHPIQGHRVEVKKAVPKED 183
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 67/178 (37%), Positives = 98/178 (55%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++ LRE+F ++G + VVMR+ RGF FV ++ + V+
Sbjct: 38 KLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMCA 97
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H + G VE KRA+SRE+ +KIFVGG+ E
Sbjct: 98 RPHKVVGCVVEPKRAVSREDSIIPGAHLMV--------------EKIFVGGIKEDTEEYN 143
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
R YFE YG + + +M D+ + + RGF F++FD D VD+V+QK +H +NG EVK
Sbjct: 144 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQK-YHTVNGHNCEVK 200
Score = 138 (53.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+ R++FE +G +TD V+M D + RGF F+++ + V V+
Sbjct: 37 RKLFIGGLSFETTDGSLREHFEKWGTLTDCVVMRDPQRKCSRGFSFVTYSCVEEVGAVMC 96
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H + G VE KRA+ ++
Sbjct: 97 ARPHKVVGCVVEPKRAVSRE 116
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 262 (97.3 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 56/136 (41%), Positives = 78/136 (57%)
Query: 56 DPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFV 114
DP+ + VL + H+LDGR ++ K R Q KIFV
Sbjct: 3 DPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQP--ERTRPKEGWQKGPRSDNSKSNKIFV 60
Query: 115 GGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHD 174
GG+P E R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD
Sbjct: 61 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHD 120
Query: 175 LNGKQVEVKRALPKDA 190
+ GK+VEVKRA P+D+
Sbjct: 121 IMGKKVEVKRAEPRDS 136
Score = 166 (63.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 52 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 111
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 112 QAVNMHFHDIMGKKVEVKRAEPRDSK 137
Score = 38 (18.4 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 294 PNTGYASGPPGAPRSSWGTQTP 315
P G + PP P +S+ TP
Sbjct: 192 PPAGRGAPPPPPPFTSYIVSTP 213
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 177 (67.4 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 41/88 (46%), Positives = 54/88 (61%)
Query: 2 DSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
D +Q KLFIGG+S+ET+ E LR +F Q G + V MR+ T RGFGFV +A +
Sbjct: 23 DPEQLQKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEV 82
Query: 61 DRVLQDK-HSLDGRTVEAKRAMSREEQQ 87
D + H +D R VE KRA+SRE+ Q
Sbjct: 83 DAATNARPHKVD-RVVEPKRAVSREDSQ 109
Score = 153 (58.9 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 122 TED-GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
TE+ R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG
Sbjct: 132 TEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 191
Query: 181 EVKRALPK 188
EV++AL K
Sbjct: 192 EVRKALSK 199
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T + R +FE G +TD V M D NT+ RGFGF+++ T + VD
Sbjct: 28 QKLFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEEVDAATN 87
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++ + VE KRA+ ++
Sbjct: 88 ARPHKVD-RVVEPKRAVSRE 106
Score = 146 (56.5 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 17 TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQDKHSLDGRTV 75
T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q H+++G
Sbjct: 132 TEEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNC 191
Query: 76 EAKRAMSREE 85
E ++A+S++E
Sbjct: 192 EVRKALSKQE 201
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 282 (104.3 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 63/183 (34%), Positives = 98/183 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+S +T+ E LR +FSQ+G V VV+R+ + RGFGFV + DP ++ V +
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQRA 92
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H++D + VE K A+ R++ + K+IF+GGL E+
Sbjct: 93 RPHTIDNKIVETKHALPRQDFK-RGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENI 151
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF +G V V ++ D+ T R R FGF+ F + ++ L H + VEVKR+
Sbjct: 152 VREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRS 211
Query: 186 LPK 188
K
Sbjct: 212 TQK 214
Score = 156 (60.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
++F+GG+ E +REYFSQ+G V ++ ++ TGR R FGF+ F DPS ++ L
Sbjct: 137 RIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAP 196
Query: 67 -KHSLDGRTVEAKRAMSREEQQF 88
KH + VE KR+ + +++F
Sbjct: 197 RKHWILQTLVEVKRSTQKADRRF 219
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+KIF+GGL T + R +F +G V D V++ D + RGFGF+++ +V+ V +
Sbjct: 32 RKIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKSVEIVQR 91
Query: 170 KTFHDLNGKQVEVKRALPK 188
H ++ K VE K ALP+
Sbjct: 92 ARPHTIDNKIVETKHALPR 110
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 169 (64.5 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 34/83 (40%), Positives = 55/83 (66%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FI G+SW+TS++ L +G+V+ ++ + TGR RGFGFV+F + + +D+V
Sbjct: 14 DDGKMFIRGLSWDTSKKDLT-----FGEVVDCIIETDPVTGRSRGFGFVLFKEAASVDKV 68
Query: 64 LQDK-HSLDGRTVEAKRAMSREE 85
L+ K H LD ++ KRA + +E
Sbjct: 69 LELKEHKLDSMLIDPKRAKALKE 91
Score = 155 (59.6 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P E+ ++Y A+G + ++ + D T RGF FI++ E V ++L+
Sbjct: 94 KKVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLE 153
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 154 NRYHQIGSGKCEIKVAEPKE 173
Score = 119 (46.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE+++EY +G++ + + T RGF F+ + D + ++L++
Sbjct: 95 KVFVGGLSPDTYEEQIKEYLGAFGEIENIELPMDTKTNERRGFCFITYTDEKPVKKLLEN 154
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 155 RYHQIGSGKCEIKVAEPKE 173
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 200 (75.5 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 33/85 (38%), Positives = 62/85 (72%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V
Sbjct: 95 EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 154
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQ 87
+ K H L+G+ ++ KRA + + ++
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 91 (37.1 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQR 149
KKIFVGGL P E+ R+YF +G V + + D T +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 221
>UNIPROTKB|F1LZL9 [details] [associations]
symbol:F1LZL9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 EMBL:AC109707 IPI:IPI00780768
Ensembl:ENSRNOT00000045359 Uniprot:F1LZL9
Length = 247
Score = 178 (67.7 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+ + R +F Q G + VV R+ T R RGFGFV +A +D +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +D R VE RA+SRE+ Q
Sbjct: 61 RPHKVDARVVEPNRAVSREDSQ 82
Score = 151 (58.2 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T R +FE G +TD V+ D NT+R RGFGF+++ T + VD +
Sbjct: 1 KLFIGGLSFETTYKNRRSHFEQRGTLTDCVVRRDPNTKRSRGFGFVTYATVEEVDAAMNA 60
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++ + VE RA+ ++
Sbjct: 61 RPHKVDARVVEPNRAVSRE 79
Score = 135 (52.6 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 9 FIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH 68
F+ GI +T E L+ + QYG + +M ++ G+ R F FV F D + + VLQ H
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQKYH 145
Query: 69 SLDGRTVEAKRAMSREEQQFS 89
++ G E ++A+S++ +S
Sbjct: 146 NVHGYNCEVRKALSKQSPDYS 166
Score = 120 (47.3 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 113 FVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172
FV G+ E + +E YG + + IM D+ + R F F++F D + VLQK +
Sbjct: 86 FVCGIKEDTEEHHLQNNYEQYGQIEVIEIMTDRGLGKKRDFAFVTFHDHDLDEIVLQK-Y 144
Query: 173 HDLNGKQVEVKRALPKDA 190
H+++G EV++AL K +
Sbjct: 145 HNVHGYNCEVRKALSKQS 162
>UNIPROTKB|D4AB76 [details] [associations]
symbol:D4AB76 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00558881 ProteinModelPortal:D4AB76
Ensembl:ENSRNOT00000043240 Uniprot:D4AB76
Length = 306
Score = 172 (65.6 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T++E LR +F Q+G L VMR+ RGFGFV + LD +
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWG-TLTDCVMRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 67 K-HSLDGRTVEAKRAMSREE 85
+ H +DG VE KRA+SRE+
Sbjct: 74 RPHKVDGGVVEPKRAVSRED 93
Score = 157 (60.3 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++ R +FE +G +TD V M D N + RGFGF+++ T + +D +
Sbjct: 15 KLFIGGLSFKTTDESLRSHFEQWGTLTDCV-MRDPNNKISRGFGFVTYTTVEELDAAMNA 73
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H ++G VE KRA+ ++ +P
Sbjct: 74 RPHKVDGGVVEPKRAVSREDSP 95
Score = 151 (58.2 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 31/77 (40%), Positives = 48/77 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVG + ED +FE YG + + IM D+ + + RGF F++FD D+VD ++
Sbjct: 104 KKIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVI 158
Query: 170 KTFHDLNGKQVEVKRAL 186
+ +H +NG EV++AL
Sbjct: 159 QKYHTVNGHNCEVRKAL 175
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+G E+ +F QYG + +M ++ +G+ RGF FV F DP +D V+Q
Sbjct: 105 KIFVG-----VKEDTEGHHFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDPDSVDTIVIQ 159
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S +E
Sbjct: 160 KYHTVNGHNCEVRKALSNQE 179
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 65/166 (39%), Positives = 89/166 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+ E LR +F Q+G + VVMR+ T RGFGFV +A +D
Sbjct: 15 KLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARS- 73
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +DGR VE KRA+SRE+ Q +KIFVGG+ E
Sbjct: 74 -HKVDGRVVEPKRAVSREDSQRPGAHLTV--------------RKIFVGGIKEDTEEHHL 118
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172
R YF+ YG + + IM D+ + + RGF ++FD D V+QK +
Sbjct: 119 RDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQKYY 164
Score = 177 (67.4 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 44/121 (36%), Positives = 63/121 (52%)
Query: 68 HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFR 127
H +DGR VE KRA+SRE+ Q +KIFVGG+ E R
Sbjct: 74 HKVDGRVVEPKRAVSREDSQRPGAHLTV--------------RKIFVGGIKEDTEEHHLR 119
Query: 128 QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187
YF+ YG + + IM D+ + + RGF ++FD D V+QK ++ +NG EV++AL
Sbjct: 120 DYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK-YYIVNGHNCEVRKALS 178
Query: 188 K 188
K
Sbjct: 179 K 179
Score = 157 (60.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T + R +FE +G + D V+M D NT+ RGFGF+++ T VD
Sbjct: 14 RKLFIGGLSFETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVDAARS 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ---HKVDGRVVEPKRAVSRE 90
Score = 153 (58.9 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF V F D V+Q
Sbjct: 103 KIFVGGIKEDTEEHHLRDYFKQYGKIEVIEIMTDRGSGKKRGFASVTFDDHDKDKIVIQK 162
Query: 67 KHSLDGRTVEAKRAMSREE 85
+ ++G E ++A+S++E
Sbjct: 163 YYIVNGHNCEVRKALSKQE 181
>UNIPROTKB|F1M6C7 [details] [associations]
symbol:F1M6C7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00370270
Ensembl:ENSRNOT00000014756 Uniprot:F1M6C7
Length = 273
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 66/183 (36%), Positives = 98/183 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T+ E LR +F Q+ + V MR+ T R RGFGFV + +D +
Sbjct: 6 KLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMNA 65
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG VE KRA+SRE+ Q K+I VGG+ E
Sbjct: 66 RPHKVDGSFVEPKRAVSREDSQSPGAHLTV--------------KEISVGGIKEDTEEHH 111
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + + F F++FD D+VD+++ + +H +NG E A
Sbjct: 112 LRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQKYHTVNGHNCETV-A 169
Query: 186 LPK 188
L K
Sbjct: 170 LSK 172
Score = 166 (63.5 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T + R +FE + +TD V M D NT+R RGFGF+++ T + VD +
Sbjct: 5 RKLFIGGLSFKTTNESLRSHFEQWRTLTDCVEMRDPNTKRSRGFGFVTYTTVEEVDAAMN 64
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G VE KRA+ ++
Sbjct: 65 ARPHKVDGSFVEPKRAVSRE 84
Score = 128 (50.1 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
++ +GGI +T E LR+YF YG + +M ++ +G+ + F FV F D +D+ V+Q
Sbjct: 97 EISVGGIKEDTEEHHLRDYFEHYGKIEVIEIMTDRGSGK-KEFAFVTFDDHDSVDKIVIQ 155
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E A+S++E
Sbjct: 156 KYHTVNGHNCETV-ALSKQE 174
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 173 (66.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 27/78 (34%), Positives = 53/78 (67%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++GK+F+G +SW ++ L+ YF+++G+V+ + + TGR RGFGFV+ D + ++++
Sbjct: 70 EEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKI 129
Query: 64 LQDK-HSLDGRTVEAKRA 80
L K H L+G ++ ++A
Sbjct: 130 LDQKEHRLNGDVIDPEKA 147
Score = 142 (55.0 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF-DTEDAVDRVL 168
KKIFVG L P TE R + E +G + + + D + + RGF FI+F + E+ V +VL
Sbjct: 156 KKIFVG-LNPEATEKN-RDFGE-FGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVL 212
Query: 169 QKTFHDLNGKQVEVKRALPKD 189
+K FH ++G++ E+K A PK+
Sbjct: 213 EKKFHTISGRKCEIKVAQPKE 233
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVG L + + + YF +G V D I D NT R RGFGF+ +V+++L +
Sbjct: 73 KMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQ 132
Query: 171 TFHDLNGKQVEVKRA 185
H LNG ++ ++A
Sbjct: 133 KEHRLNGDVIDPEKA 147
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 62/139 (44%), Positives = 84/139 (60%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
M S K+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +
Sbjct: 12 MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71
Query: 61 DRVL-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPP 119
D+VL Q H LD +T++ K A R Q KKIFVGGL
Sbjct: 72 DKVLGQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSA 115
Query: 120 -TLTEDGFRQYFEAYGHVT 137
T+ ED +QYFE +G V+
Sbjct: 116 NTVVED-VKQYFEQFGKVS 133
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 18 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77
Query: 171 TFHDLNGKQVEVKRALPKDANP 192
H+L+ K ++ K A P+ A P
Sbjct: 78 PHHELDSKTIDPKVAFPRRAQP 99
>UNIPROTKB|F1PP12 [details] [associations]
symbol:F1PP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03007418
ProteinModelPortal:F1PP12 Ensembl:ENSCAFT00000029311 Uniprot:F1PP12
Length = 229
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 63/182 (34%), Positives = 96/182 (52%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
+LFI G+++ET+ E LR +F Q+G ++ VVM + T R FGFV++A +D +
Sbjct: 15 RLFIRGLNFETTNESLRGHFKQWGILMDCVVMIDPNTRHSRRFGFVMYATVEKVDAAVNV 74
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
+ R + K A+SRE+ Q KK FVGG+ E
Sbjct: 75 RPHKVNRIGKPKMAVSREDSQRPGAHLTG--------------KKTFVGGIKEDTEEHHL 120
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R YFE YG + + IM DQ + + RGF F++ D D++D+++ + H +NG EV+RAL
Sbjct: 121 RHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQKQHTVNGHNYEVRRAL 180
Query: 187 PK 188
K
Sbjct: 181 SK 182
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K F+GGI +T E LR YF QYG++ +M ++ + + RGF FV D +D+ V+Q
Sbjct: 105 KTFVGGIKEDTEEHHLRHYFEQYGEIRMIEIMTDQGSDKKRGFAFVTCDDHDSIDKIVIQ 164
Query: 66 DKHSLDGRTVEAKRAMSREE 85
+H+++G E +RA+S++E
Sbjct: 165 KQHTVNGHNYEVRRALSKQE 184
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 56/165 (33%), Positives = 94/165 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KL + GI W+ + L++Y S++GD+ +VM++++TGR RGFG+V FA L+
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
+H L R +E K A +EE + A +IFV +P +++E F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAKKVT----------------RIFVARIPSSVSESDF 107
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
R +FE YG +TD+ + D N+++ RG GFI+F + D+V+ +++ T
Sbjct: 108 RSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT 152
Score = 184 (69.8 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
+IFV +P +++E FR +FE YG +TD+ + D N+++ RG GFI+F + D+V+ +++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 171 TFHDLNGKQVEVKRALPK-DANP 192
T HDL G V V RA PK D +P
Sbjct: 152 T-HDLGGTTVAVDRATPKEDDHP 173
Score = 156 (60.0 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 33/83 (39%), Positives = 46/83 (55%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIFVG LP + D R YF +GH+ D I D RGFGF++F DRV ++
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 171 TFHDLNGKQVEVKRALPKD-ANP 192
+ H++ G++V + A P D A P
Sbjct: 301 S-HEICGQEVAIDSATPLDEAGP 322
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF-DTEDAVDRVL 168
+K+ V G+P + DG + Y +G + D ++M D++T R RGFG+++F EDA + +
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 169 QKTFHDLNGKQVEVKRALPKD 189
K H L + +EVK A PK+
Sbjct: 62 -KGEHFLGNRILEVKVATPKE 81
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+G + E S + LR+YF ++G + + ++ RGFGFV FA+ + DRV +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 67 KHSLDGRTVEAKRAMSREEQQFSA 90
H + G+ V A +E SA
Sbjct: 301 SHEICGQEVAIDSATPLDEAGPSA 324
Score = 126 (49.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
++F+ I SE R +F +YG++ + ++ + + RG GF+ F+ ++ +++D
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHSLDGRTVEAKRAMSREE 85
H L G TV RA +E+
Sbjct: 152 THDLGGTTVAVDRATPKED 170
>UNIPROTKB|F1M4M4 [details] [associations]
symbol:F1M4M4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00558004
Ensembl:ENSRNOT00000049169 Uniprot:F1M4M4
Length = 255
Score = 162 (62.1 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
KIF+ G+ E R YFE Y + + IM D+ +++ R F F++FD D+VD++ +
Sbjct: 104 KIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQ 163
Query: 171 TFHDLNGKQVEVKRALPK 188
+H +NG EV++AL K
Sbjct: 164 KYHTVNGHNCEVRKALSK 181
Score = 150 (57.9 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ T+EE LR +F Q+ ++ VVMR+ T R RG GF + +D +
Sbjct: 20 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 79
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +DGR V SRE+ Q
Sbjct: 80 RPHKVDGRVV------SREDSQ 95
Score = 146 (56.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
K+FI GI +T E LR+YF QY + +M ++ + + R F FV F + +D++ +Q
Sbjct: 104 KIFISGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFIQ 163
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 164 KYHTVNGHNCEVRKALSKQE 183
Score = 132 (51.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R +FE + + V+M D NT+R RG GF ++ T + +D +
Sbjct: 19 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 78
Query: 170 KTFHDLNGKQV 180
H ++G+ V
Sbjct: 79 ARPHKVDGRVV 89
>UNIPROTKB|F1M0H6 [details] [associations]
symbol:F1M0H6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00766574
Ensembl:ENSRNOT00000044621 Uniprot:F1M0H6
Length = 360
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 68/183 (37%), Positives = 98/183 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F + G + VVMR+ T RGFGFV ++ +D +
Sbjct: 33 KLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMCA 92
Query: 67 -KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
H +DGR VE K+A+SRE+ KK FVGG+ E
Sbjct: 93 WLHKVDGRVVEPKKAVSREDS--------------VKLGAHLMVKKTFVGGIKEDTEEYN 138
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
+ YFE YG + + M ++ + R RGF F F D VD+++ + H +NG EVK+A
Sbjct: 139 LKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHD-VDKIVVQKHHTINGHNCEVKKA 195
Query: 186 LPK 188
L K
Sbjct: 196 LSK 198
Score = 157 (60.3 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K F+GGI +T E L++YF +YG + +T M + +GR RGF F +F D + V+Q
Sbjct: 124 KTFVGGIKEDTEEYNLKDYFEKYGKI-ETEGMENRQSGR-RGFAFAIFGDHDVDKIVVQK 181
Query: 67 KHSLDGRTVEAKRAMSREE 85
H+++G E K+A+S+ E
Sbjct: 182 HHTINGHNCEVKKALSKLE 200
Score = 156 (60.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL +D R++F+ G +TD V+M D T+ RGFGF+++ + VD +
Sbjct: 32 RKLFIGGLSFETADDSLREHFKKRGTLTDCVVMRDPQTKCSRGFGFVTYSCVEEVDAAMC 91
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE K+A+ ++
Sbjct: 92 AWLHKVDGRVVEPKKAVSRE 111
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 65/183 (35%), Positives = 97/183 (53%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-D 66
+ IG + +TSE LR +F +G + VV+ T R R FGFV +++ D +
Sbjct: 9 VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAAS 68
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H++DG TVE KRA+SRE+ SA KK+FVGGL + E
Sbjct: 69 PHAVDGNTVELKRAVSRED---SARPGAHAKV-----------KKLFVGGLKGDVAEGDL 114
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
++F +G V I+ D+ + + RGFGF+ F + DA D+ FH + G +VEVK+A+
Sbjct: 115 IEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAV 174
Query: 187 PKD 189
PK+
Sbjct: 175 PKE 177
Score = 155 (59.6 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLF+GG+ + +E L E+FSQ+G V + ++ +K +G+ RGFGFV F D+
Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVV 158
Query: 67 K-HSLDGRTVEAKRAMSREE 85
K H + G VE K+A+ +E+
Sbjct: 159 KFHPIQGHRVEVKKAVPKED 178
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 160 (61.4 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGLP +E R +FE +G V D+ +D+ T+ R F FI F+ E++ D+
Sbjct: 110 KKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASS 169
Query: 170 KTFHDLNGKQVEVKRALPK 188
+T ++ +VK+A+P+
Sbjct: 170 QTKQTFGTRECDVKKAVPQ 188
Score = 156 (60.0 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
++ K+F+GGIS E + E L +F+QYG+V Q V ++T GR RGF FV F
Sbjct: 26 NEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKL 85
Query: 63 VLQDKH-SLDGRTVEAKRAMSREEQQ 87
L + ++ G++VE K A SRE ++
Sbjct: 86 ALAAREQTIKGKSVEVKPAKSRENKK 111
Score = 146 (56.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ P + + +F YG V + YD+ R RGF F+ F T + L
Sbjct: 29 KKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALA 88
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+ GK VEVK A ++
Sbjct: 89 AREQTIKGKSVEVKPAKSRE 108
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 56/152 (36%), Positives = 85/152 (55%)
Query: 38 MREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXX 96
MR+ + R RGFGFV F+ + +D + + HS+DGR VE KRA++REE
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES---------- 50
Query: 97 XXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156
KK+FVGG+ E R YFE YG + + I+ D+ + + RGFGF+
Sbjct: 51 ----GKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 106
Query: 157 SFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
+FD D VD+++ + +H +NG EV++AL +
Sbjct: 107 TFDDHDPVDKIVLQKYHTINGHNAEVRKALSR 138
Score = 192 (72.6 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
KLF+GGI +T E LR+YF +YG + ++ ++ +G+ RGFGFV F D +D+ VLQ
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+SR+E Q
Sbjct: 121 KYHTINGHNAEVRKALSRQEMQ 142
>UNIPROTKB|F1LYB2 [details] [associations]
symbol:F1LYB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563016
Ensembl:ENSRNOT00000051535 Uniprot:F1LYB2
Length = 261
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 64/183 (34%), Positives = 98/183 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIG +S+ET+++ LRE+ S+ + VVMR+ R GFGFV ++ +D +
Sbjct: 25 KLFIGYLSFETTDDSLREH-SEKWTLTDCVVMRDPLFERSSGFGFVTYSCVEEVDAAMCA 83
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DGR V RA+SRE+ KKIFVGG+ E
Sbjct: 84 RPHKVDGRVV-GPRAVSREDS--------------VKPGTHLTVKKIFVGGVREDREEYN 128
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
+ YFE YG + + +M D+ + + RGF F++FD D VD++ + +H +NG E+K+
Sbjct: 129 LKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQKYHTINGHNCEMKKV 188
Query: 186 LPK 188
L K
Sbjct: 189 LSK 191
Score = 159 (61.0 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
K+F+GG+ + E L++YF +YG + VM ++ +G+ RGF FV F D +D++ +Q
Sbjct: 114 KIFVGGVREDREEYNLKDYFEKYGKIGTIDVMEDRQSGKKRGFAFVTFDDLDTVDKIAVQ 173
Query: 66 DKHSLDGRTVEAKRAMSREEQQ 87
H+++G E K+ +S++ Q
Sbjct: 174 KYHTINGHNCEMKKVLSKQGMQ 195
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 187 (70.9 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 34/79 (43%), Positives = 51/79 (64%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ E R YFE YG + + IM D+ + + RGF F++FD D+VD+++
Sbjct: 56 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 115
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ +H +NG EV++AL K
Sbjct: 116 QKYHTVNGHNCEVRKALSK 134
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 57 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 117 KYHTVNGHNCEVRKALSKQE 136
Score = 87 (35.7 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTV 36
KLFIGG+S+ET++E LR +F Q+G + V
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCV 44
>UNIPROTKB|E1BK61 [details] [associations]
symbol:E1BK61 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585 IPI:IPI00689266
Ensembl:ENSBTAT00000016960 Uniprot:E1BK61
Length = 270
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 68/182 (37%), Positives = 93/182 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S+ET +E L +F + G + VVMR T RGFGFV L +
Sbjct: 11 KLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 69
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +D R VE KR +SR + Q KKIFVGG+ E
Sbjct: 70 PHKVDERVVEPKRDVSRGDSQ--------------RPHAHLTVKKIFVGGIQEGTEEHHL 115
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R FE YG + D+ IM D+ + + RGF F +FD D+VD+++ + +H +NG EV+ AL
Sbjct: 116 RNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREAL 174
Query: 187 PK 188
K
Sbjct: 175 SK 176
Score = 145 (56.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI T E LR F QYG + +M ++ + + RGF F F D +D+ V+Q
Sbjct: 100 KIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 158
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E + A+S++E
Sbjct: 159 KYHTVNGHNCEVREALSKQE 178
>UNIPROTKB|G3MYU0 [details] [associations]
symbol:G3MYU0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:DAAA02005585
Ensembl:ENSBTAT00000064368 Uniprot:G3MYU0
Length = 256
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 68/182 (37%), Positives = 93/182 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S+ET +E L +F + G + VVMR T RGFGFV L +
Sbjct: 27 KLFIRGLSFETIDESLSSHF-EMGKAHRLVVMRVPNTKHSRGFGFVTKPWWRSLAAMNAR 85
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +D R VE KR +SR + Q KKIFVGG+ E
Sbjct: 86 PHKVDERVVEPKRDVSRGDSQ--------------RPHAHLTVKKIFVGGIQEGTEEHHL 131
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186
R FE YG + D+ IM D+ + + RGF F +FD D+VD+++ + +H +NG EV+ AL
Sbjct: 132 RNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQKYHTVNGHNCEVREAL 190
Query: 187 PK 188
K
Sbjct: 191 SK 192
Score = 145 (56.1 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI T E LR F QYG + +M ++ + + RGF F F D +D+ V+Q
Sbjct: 116 KIFVGGIQEGTEEHHLRNNFEQYGKI-DIEIMTDRGSDKKRGFAFETFDDHDSVDKIVIQ 174
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E + A+S++E
Sbjct: 175 KYHTVNGHNCEVREALSKQE 194
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 193 (73.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 32/81 (39%), Positives = 59/81 (72%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D+V+ K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 68 -HSLDGRTVEAKRAMSREEQQ 87
H L+G+ ++ KRA + + ++
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKE 81
Score = 159 (61.0 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 172 FHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 61 EHKLNGKVIDPKRA 74
Score = 79 (32.9 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHV 136
KKIFVGGL P E+ R+YF +G V
Sbjct: 84 KKIFVGGLSPDTPEEKIREYFGGFGEV 110
>UNIPROTKB|D4A6Z0 [details] [associations]
symbol:D4A6Z0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00948011
ProteinModelPortal:D4A6Z0 Ensembl:ENSRNOT00000067831 Uniprot:D4A6Z0
Length = 176
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 60/162 (37%), Positives = 89/162 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++ + VVMR+ T R RGFGFV + +
Sbjct: 14 KLFIGGLSFETTDDSLREHF-KWDTLTDCVVMRDPQTERSRGFGFVYSCVEEVDAAMCAR 72
Query: 67 KHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGF 126
H +DG VE KRA+SRE+ KKIFVGG+ E
Sbjct: 73 PHKVDGHVVEPKRAISREDS--------------VKPGAHLMVKKIFVGGIKEDTEEYNL 118
Query: 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168
R YFE YG++ + ++ D+ + + RGF F++FD D VD+++
Sbjct: 119 RDYFE-YGNIKTIEVVEDRQSGKKRGFAFLTFDDHDTVDKIV 159
Score = 147 (56.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++F+ + +TD V+M D T+R RGFGF+ + + VD +
Sbjct: 13 RKLFIGGLSFETTDDSLREHFK-WDTLTDCVVMRDPQTERSRGFGFV-YSCVEEVDAAMC 70
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G VE KRA+ ++
Sbjct: 71 ARPHKVDGHVVEPKRAISRE 90
>UNIPROTKB|D4ACP9 [details] [associations]
symbol:D4ACP9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00388048
ProteinModelPortal:D4ACP9 Ensembl:ENSRNOT00000002123 Uniprot:D4ACP9
Length = 253
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 66/188 (35%), Positives = 97/188 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ETS++ LRE+F Q+ D+L V+ + T R R FGFV ++ +D +
Sbjct: 14 KLFIGGLSFETSDDSLREHFEQW-DMLTHCVVMDPQTKRSRVFGFVTYSCVKEVDAAMCA 72
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +DG VE KR RE+ KKIF+GG+ E
Sbjct: 73 RPHKVDGCVVEPKRPF-REDS--------------VKPVVCLLAKKIFIGGIKEDTEEHN 117
Query: 126 FRQYFEAYGHVTDVVIMY-DQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184
R YFE YG + + IM D+ + RGF F++FD VD+++ + H +N +VK+
Sbjct: 118 LRDYFEKYGKIETIEIMEEDRQSGEKRGFAFVTFDDHYTVDKIVVQKCHTINRHNCDVKK 177
Query: 185 ALPKDANP 192
A K P
Sbjct: 178 APSKQEMP 185
>UNIPROTKB|F1P645 [details] [associations]
symbol:LOC607505 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03007023 Ensembl:ENSCAFT00000000618 OMA:EMARASP
Uniprot:F1P645
Length = 317
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 67/185 (36%), Positives = 96/185 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F ++G + VV RE R RGFG V P L+ V
Sbjct: 14 KLFIGGLSFETTDESLRSHFERWGPLPDRVVRREPNAERSRGFGVV----PRHLEEVAAA 69
Query: 67 KHSLDGRTVEA---KRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTE 123
++ R E +RA SRE+ Q KKIFVGG+ E
Sbjct: 70 RNPGPTRWTEESWKQRAASREDSQRPGAHLTV--------------KKIFVGGIKGDAEE 115
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
R FE G + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV+
Sbjct: 116 HHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHGCEVR 175
Query: 184 RALPK 188
+AL K
Sbjct: 176 KALSK 180
Score = 150 (57.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI + E LR+ F Q G +M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 103 KIFVGGIKGDAEEHHLRDDFEQDGKTEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 162
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 163 KYHTVNGHGCEVRKALSKQE 182
>UNIPROTKB|D4A8U2 [details] [associations]
symbol:D4A8U2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00947740
ProteinModelPortal:D4A8U2 Ensembl:ENSRNOT00000064543
ArrayExpress:D4A8U2 Uniprot:D4A8U2
Length = 196
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 59/163 (36%), Positives = 89/163 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL-Q 65
KLFIGG+S+E +++ LRE+F ++G + VVMR+ T R R F FV ++ +D +
Sbjct: 14 KLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCA 73
Query: 66 DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
H++DGR VE KRA+SRE+ KKIFVGG+ E
Sbjct: 74 QPHNVDGRVVEPKRAVSREDS--------------VKPGAHLTVKKIFVGGIKEDTEEYN 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168
R YFE YG + + +M D+ + + R F++FD D VD+++
Sbjct: 120 LRDYFEKYGKIKTMEVMEDRLSGKERLL-FVTFDDHDTVDKIV 161
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T+D R++FE +G +TD V+M D T+R R F F+++ VD +
Sbjct: 13 RKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMC 72
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H+++G+ VE KRA+ ++
Sbjct: 73 AQPHNVDGRVVEPKRAVSRE 92
>WB|WBGene00019249 [details] [associations]
symbol:H28G03.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:FO081568 RefSeq:NP_741783.1
UniGene:Cel.17692 ProteinModelPortal:H2L0D0 SMR:H2L0D0 PRIDE:H2L0D0
EnsemblMetazoa:H28G03.1a.1 EnsemblMetazoa:H28G03.1a.2 GeneID:180791
KEGG:cel:CELE_H28G03.1 CTD:180791 WormBase:H28G03.1a OMA:HIVNERK
Uniprot:H2L0D0
Length = 336
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 65/189 (34%), Positives = 102/189 (53%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S +T++E+L YFSQ+G V+ +V+R+ T RGFGFV FA + + D
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTL-TED 124
+ H L G+TV++KRA+ RE Q S+ K+ + G+ + + D
Sbjct: 131 RPHKLGGKTVDSKRAIPRE--QMSSMIPPPFFETDPAPGC-----KLLLNGITNGVHSVD 183
Query: 125 GFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF--HDLNGKQVEV 182
R YFE +G + V I+ +PRG GF+ ++ +++ DR L H +N +++EV
Sbjct: 184 SLRVYFETFGTLDQVEIL-----GQPRGLGFVIYEDKESADRCLAHNSGRHIVNERKIEV 238
Query: 183 KRALPKDAN 191
R K N
Sbjct: 239 -RVFTKHPN 246
Score = 165 (63.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ YF +G V D +++ D NT+ RGFGF++F + + + +
Sbjct: 70 RKLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMN 129
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H L GK V+ KRA+P++
Sbjct: 130 DRPHKLGGKTVDSKRAIPRE 149
>UNIPROTKB|F1M165 [details] [associations]
symbol:F1M165 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362409 Ensembl:ENSRNOT00000029622
Uniprot:F1M165
Length = 288
Score = 154 (59.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 111 KIF-VGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KIF V G+ E R YFE Y + + IM D+ +++ R F F++FD D+VD++
Sbjct: 100 KIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFI 159
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ +H +NG EV++AL K
Sbjct: 160 QKYHTVNGHNCEVRKALSK 178
Score = 150 (57.9 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ T+EE LR +F Q+ ++ VVMR+ T R RG GF + +D +
Sbjct: 16 KLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMNA 75
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +DGR V SRE+ Q
Sbjct: 76 RPHKVDGRVV------SREDSQ 91
Score = 137 (53.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 7 KLFI-GGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-L 64
K+FI GI +T E LR+YF QY + +M ++ + + R F FV F + +D++ +
Sbjct: 100 KIFIVSGIKEDTEEHHLRDYFEQYRKIEVIEIMTDRGSRKKRDFAFVTFDEHDSVDKIFI 159
Query: 65 QDKHSLDGRTVEAKRAMSREE 85
Q H+++G E ++A+S++E
Sbjct: 160 QKYHTVNGHNCEVRKALSKQE 180
Score = 132 (51.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R +FE + + V+M D NT+R RG GF ++ T + +D +
Sbjct: 15 RKLFIGGLSFRTTEESLRSHFEQWATLITCVVMRDPNTERSRGSGFDTYTTVEEMDAAMN 74
Query: 170 KTFHDLNGKQV 180
H ++G+ V
Sbjct: 75 ARPHKVDGRVV 85
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 53/135 (39%), Positives = 78/135 (57%)
Query: 56 DPSILDRVL-QDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFV 114
D + +D+VL Q +H LD +T++ K A R Q KKIFV
Sbjct: 2 DQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFV 45
Query: 115 GGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHD 174
GGL T + +QYFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH+
Sbjct: 46 GGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHE 105
Query: 175 LNGKQVEVKRALPKD 189
+N K VE K+A PK+
Sbjct: 106 INNKMVECKKAQPKE 120
Score = 169 (64.5 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T+ E +++YF Q+G V ++M +KTT R RGFGFV F I+++V +
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 102 HFHEINNKMVECKKAQPKE 120
>UNIPROTKB|F1M7F0 [details] [associations]
symbol:F1M7F0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00563307
ProteinModelPortal:F1M7F0 Ensembl:ENSRNOT00000041604 Uniprot:F1M7F0
Length = 224
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 58/176 (32%), Positives = 90/176 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KL IGG+ ++T+ E LR +F ++G VVMR+ T R R GFV + +D +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ +DGR V+ KRA+SRE+ Q KKIF GG+ E
Sbjct: 84 RPQKMDGRLVKPKRAVSREDSQRPGTQLTV--------------KKIFEGGIKEDTEEHN 129
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVE 181
R YFE YG + + IM D+++ + + F + D D+VD++ + +H +NG V+
Sbjct: 130 VRDYFEHYGKIDMIEIMTDRSSGK-KEFALVPLDDHDSVDKIAIQKYHTVNGTTVK 184
Score = 146 (56.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+ +GGL T + R +FE +G TD V+M D NT+R R GF++++T + VD +
Sbjct: 24 KLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGFVTYNTVEEVDAAMNA 83
Query: 171 TFHDLNGKQVEVKRALPKD 189
++G+ V+ KRA+ ++
Sbjct: 84 RPQKMDGRLVKPKRAVSRE 102
>UNIPROTKB|F1PQB0 [details] [associations]
symbol:HNRNPA1L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
EMBL:AAEX03003034 Ensembl:ENSCAFT00000027199 Uniprot:F1PQB0
Length = 314
Score = 162 (62.1 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ E R YFE YG + + M D+ + + RGF F++FD D+VD+++
Sbjct: 100 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVI 159
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ +H NG V++ L K
Sbjct: 160 QKYHAANGHNRVVRKTLWK 178
Score = 152 (58.6 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + M ++ +G+ RGF FV F D +D+ V+Q
Sbjct: 101 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIESMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 160
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+ +G ++ + ++E
Sbjct: 161 KYHAANGHNRVVRKTLWKQE 180
Score = 129 (50.5 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G+S+E ++E LR +F Q+G + VVMR+ T RGFG + D ++ R +
Sbjct: 15 KLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAMEEVDAAMNSRPCK- 73
Query: 67 KHSLDGRTVEAKRAMSREE 85
+ R +E KRA+S+E+
Sbjct: 74 ---VGRRVLEPKRAVSQED 89
Score = 120 (47.3 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 27/83 (32%), Positives = 48/83 (57%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+ GL +T++ R +FE +G +TD V+M D NT+ RGFG + + VD +
Sbjct: 14 QKLFIRGLSFEITDESLRTHFEQWGTLTDYVVMRDPNTKCSRGFGAM-----EEVDAAMN 68
Query: 170 KTFHDLNGKQVEVKRALPKDANP 192
+ + +E KRA+ ++ +P
Sbjct: 69 SRPCKVGRRVLEPKRAVSQEDSP 91
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 165 (63.1 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K F+GG+P +T +YFE YG V VVI D T+R RGF F++ + +R+L+
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 TFHDLNGKQVEVK 183
T H+LNGK+V+V+
Sbjct: 175 T-HELNGKRVDVR 186
Score = 149 (57.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+KIFVGGL T+D YF +G + V I+ D ++ R R FGF+ F E++V +VL+
Sbjct: 198 RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVLK 256
Query: 170 KTFHDLNGKQVEVKRALPK 188
H + K VEV++A PK
Sbjct: 257 HKRHKIYDKMVEVRKAEPK 275
Score = 148 (57.2 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K FIGGI + + + EYF QYG V V+ ++ T R RGF FV A +R+L+D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 67 KHSLDGRTVEAK 78
H L+G+ V+ +
Sbjct: 175 THELNGKRVDVR 186
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 3 SD-QGKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSI 59
SD Q K+F+GG+++ +++ L YFS +G DV+Q V+ ++GR R FGFVVF++ +
Sbjct: 194 SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVL---DSSGRSRCFGFVVFSNENS 250
Query: 60 LDRVLQDK-HSLDGRTVEAKRA 80
+ +VL+ K H + + VE ++A
Sbjct: 251 VAKVLKHKRHKIYDKMVEVRKA 272
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 165 (63.1 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K F+GG+P +T +YFE YG V VVI D T+R RGF F++ + +R+L+
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 171 TFHDLNGKQVEVK 183
T H+LNGK+V+V+
Sbjct: 175 T-HELNGKRVDVR 186
Score = 149 (57.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+KIFVGGL T+D YF +G + V I+ D ++ R R FGF+ F E++V +VL+
Sbjct: 198 RKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVLK 256
Query: 170 KTFHDLNGKQVEVKRALPK 188
H + K VEV++A PK
Sbjct: 257 HKRHKIYDKMVEVRKAEPK 275
Score = 148 (57.2 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K FIGGI + + + EYF QYG V V+ ++ T R RGF FV A +R+L+D
Sbjct: 115 KFFIGGIPQYITSKHITEYFEQYGTVQHVVIAQDHETKRNRGFAFVTMASHINKERILRD 174
Query: 67 KHSLDGRTVEAK 78
H L+G+ V+ +
Sbjct: 175 THELNGKRVDVR 186
Score = 135 (52.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 32/82 (39%), Positives = 55/82 (67%)
Query: 3 SD-QGKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSI 59
SD Q K+F+GG+++ +++ L YFS +G DV+Q V+ ++GR R FGFVVF++ +
Sbjct: 194 SDIQRKIFVGGLNYYWTKDTLESYFSTFGEIDVVQIVL---DSSGRSRCFGFVVFSNENS 250
Query: 60 LDRVLQDK-HSLDGRTVEAKRA 80
+ +VL+ K H + + VE ++A
Sbjct: 251 VAKVLKHKRHKIYDKMVEVRKA 272
>UNIPROTKB|F1M6M1 [details] [associations]
symbol:F1M6M1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00563231
Ensembl:ENSRNOT00000040517 Uniprot:F1M6M1
Length = 253
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 55/148 (37%), Positives = 79/148 (53%)
Query: 43 TGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXX 101
T R RGFGFV +D + + H +DGR VE KRAMSRE+ Q
Sbjct: 1 TKRSRGFGFVTCTSVEKVDATMNARPHKVDGRVVEPKRAMSREDSQ-------------- 46
Query: 102 XXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161
KKIFVG + E R YFE YG + + IM D+ +++ RGF F++FD
Sbjct: 47 RPDAHLTVKKIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDH 106
Query: 162 DAVDRVLQKTFHDLNGK-QVEVKRALPK 188
D+VD+++ + +H +NG + EV++ L K
Sbjct: 107 DSVDKIVTQKYHTVNGHHKCEVRKPLSK 134
Score = 150 (57.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 28/81 (34%), Positives = 50/81 (61%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+G I +T E LR+YF QYG + +M ++ + + RGF FV F D +D+++
Sbjct: 56 KIFVGSIKEDTEEHHLRDYFEQYGKIELIEIMADRGSEKKRGFAFVTFDDHDSVDKIVTQ 115
Query: 67 K-HSLDGR-TVEAKRAMSREE 85
K H+++G E ++ +S++E
Sbjct: 116 KYHTVNGHHKCEVRKPLSKQE 136
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 55/162 (33%), Positives = 85/162 (52%)
Query: 28 QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQ 86
++G + VVMR+ T RGF F+ +A +D + + H +D R VE K+A+SRE+
Sbjct: 2 KWGMLTDCVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDS 61
Query: 87 QFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQN 146
Q KKIFVGG+ + R YFE YG + + IM D+
Sbjct: 62 QRPGAHLTV--------------KKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRG 107
Query: 147 TQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
+ R F F++FD D+VD+++ + +H +NG EV++AL K
Sbjct: 108 SGNKRSFAFVTFDAHDSVDKIVIQKYHTVNGHNCEVRKALLK 149
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T + LR+YF YG + +M ++ +G R F FV F +D+ V+Q
Sbjct: 72 KIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHDSVDKIVIQ 131
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+ ++E
Sbjct: 132 KYHTVNGHNCEVRKALLKQE 151
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 41/79 (51%), Positives = 60/79 (75%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAM 81
L Q H LD +T ++ +
Sbjct: 79 LGQPHHELDSKTCRRQKRL 97
Score = 153 (58.9 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL + D R YF +G + + ++M D T+R RGFGF++F +VD+VL +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 171 TFHDLNGKQVEVKRAL 186
H+L+ K ++ L
Sbjct: 82 PHHELDSKTCRRQKRL 97
>RGD|1564416 [details] [associations]
symbol:RGD1564416 "similar to Heterogeneous nuclear
ribonucleoprotein A1 (Helix-destabilizing protein
(Topoisomerase-inhibitor suppressed)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1564416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00388666 Ensembl:ENSRNOT00000037037 Uniprot:F1LZ88
Length = 314
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 58/180 (32%), Positives = 89/180 (49%)
Query: 10 IGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-H 68
I G+S+ET++E L+ + +VMR+ T R RGFGFV + +D + + H
Sbjct: 18 IRGLSFETTDESLKTM----ENTSNFLVMRDPNTKRSRGFGFVPYTTVEEVDATMNARPH 73
Query: 69 SLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQ 128
+ GR V KR E+ KK+ VGG+ E R
Sbjct: 74 KVGGRVVGPKRVSCGMEKS-------------QRPGAPLTMKKVLVGGINEDTEEHHLRD 120
Query: 129 YFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
YFE YG + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++AL K
Sbjct: 121 YFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSK 180
Score = 155 (59.6 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+ +GGI+ +T E LR+YF YG +M ++ + + RGF FV F D +D+ V+Q
Sbjct: 103 KVLVGGINEDTEEHHLRDYFEWYGKTEVIEIMTDRGSVKKRGFAFVTFDDHDSVDKIVIQ 162
Query: 66 DKHSLDGRTVEAKRAMSREEQ 86
H+++G E ++A+S++E+
Sbjct: 163 KYHTVNGHNCEVRKALSKQER 183
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 63/181 (34%), Positives = 94/181 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQ 65
KLFIGG+S +T+ + L Y+ Q+G L VV+R+ T+ + R F + F +D
Sbjct: 17 KLFIGGLSSQTTGKGLN-YYKQWGK-LDCVVIRDPTSQKSR-FILLHFHPWLRVDAARAA 73
Query: 66 DKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
S+DG+ V K A+ RE+ KK+F+GGL E
Sbjct: 74 TPRSIDGKMVAPKHAVPREDY--------------GKPGPLVTVKKLFIGGLTEDTEEHH 119
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE Y + + I+ D+ + + RGFGF++FD D VD++LQK H +NG EV++A
Sbjct: 120 LRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQKN-HTVNGHHAEVRKA 178
Query: 186 L 186
L
Sbjct: 179 L 179
Score = 167 (63.8 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 30/81 (37%), Positives = 53/81 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG++ +T E LR+YF +Y + ++ ++ + + RGFGFV F D +D++LQ
Sbjct: 105 KLFIGGLTEDTEEHHLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVDKLLQK 164
Query: 67 KHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+S+ + Q
Sbjct: 165 NHTVNGHHAEVRKALSQSKIQ 185
>UNIPROTKB|J9P0Y4 [details] [associations]
symbol:J9P0Y4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03013644
Ensembl:ENSCAFT00000045249 OMA:SEEGYNG Uniprot:J9P0Y4
Length = 223
Score = 167 (63.8 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 49/146 (33%), Positives = 72/146 (49%)
Query: 7 KLFIGGISWETSEERLREYFSQYGD-----VLQT--VVMREKTTGRPRGFGFVVFADPSI 59
KLF GG+S+ET++E LR + Q+G VL VV+R+ T R R FG+ +
Sbjct: 3 KLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYATMGE--- 59
Query: 60 LDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLP 118
++ ++ K H +DG VE KR +S+E Q +KIFVGG+
Sbjct: 60 VEAIMNGKPHKVDGIAVELKRPISKESSQRPGAHLTL--------------RKIFVGGIK 105
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYD 144
E R YFE YG + +++ YD
Sbjct: 106 EDAEEHHLRDYFEQYGKI-EMIDDYD 130
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVT-------DVVIMYDQNTQRPRGFGFISFDTED 162
+K+F GGL T++ R + E +G +T D V++ D NT+R R FG+ T
Sbjct: 2 QKLFFGGLSFETTDESLRSHSEQWGILTVVCVLMRDYVVLRDSNTKRSRSFGYA---TMG 58
Query: 163 AVDRVLQKTFHDLNGKQVEVKRALPKDAN 191
V+ ++ H ++G VE+KR + K+++
Sbjct: 59 EVEAIMNGKPHKVDGIAVELKRPISKESS 87
Score = 70 (29.7 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 153 FGFISF-DTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
+G I D D+VD+++ + +H +NG EV++AL K
Sbjct: 120 YGKIEMIDDYDSVDKIIIQKYHTVNGHDSEVRKALSK 156
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 110 KKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168
KKIFVGGL T+ ED +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V
Sbjct: 49 KKIFVGGLSANTVVED-VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 107
Query: 169 QKTFHDLNGKQVEVKRALPKD 189
+ FH++N K VE K+A PK+
Sbjct: 108 EIHFHEINNKMVECKKAQPKE 128
Score = 167 (63.8 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T E +++YF Q+G V ++M +KTT R RGFGFV F + ++++V +
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 110 HFHEINNKMVECKKAQPKE 128
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 226 (84.6 bits), Expect = 5.4e-18, P = 5.4e-18
Identities = 50/178 (28%), Positives = 86/178 (48%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-- 65
LF+G +SW +EE L + F Q+G+ L +M E+ TGR RGFG+V F + + + +
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 66 DKHSLDGRTVEAKRAMSR--EEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTE 123
+H +DGR + A R + Q +FVG LP + E
Sbjct: 338 KEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSANE 397
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVE 181
D + F G+V + + D + RP+GFG++ + + D +K +++L G +++
Sbjct: 398 DSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA----RKAYNELQGAEID 451
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF-DTEDAVDRVLQK 170
+FVG L +TE+ Q FE +G ++ IM +++T R RGFG++ F + DA
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 171 TFHDLNGKQVEVKRALPKDAN 191
H+++G+++ + A + AN
Sbjct: 338 KEHEIDGRKINLDYATGRPAN 358
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 50/144 (34%), Positives = 75/144 (52%)
Query: 46 PRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXX 104
P+ FGFV ++ +D + + H +DGR VE KRA+SRE+
Sbjct: 41 PQSFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV--------- 91
Query: 105 XXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAV 164
KIFVGG+ E R YFE YG + + +M D+ + + RGF F++FD D V
Sbjct: 92 ------KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV 145
Query: 165 DRVLQKTFHDLNGKQVEVKRALPK 188
D+++ +H +NG EV++AL K
Sbjct: 146 DKIVVN-YHTINGHNCEVRKALSK 168
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 30/81 (37%), Positives = 53/81 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI + E LR+YF +YG + VM ++ +G+ RGF FV F D +D+++ +
Sbjct: 92 KIFVGGIKEDAEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVN 151
Query: 67 KHSLDGRTVEAKRAMSREEQQ 87
H+++G E ++A+S++E Q
Sbjct: 152 YHTINGHNCEVRKALSKQEMQ 172
Score = 152 (58.6 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 36/80 (45%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
+LFIGG+S+ET E+ LRE F + G + VVMR+ P+ FGFV ++ +D +
Sbjct: 8 RLFIGGLSFETIEDSLREGF-EMGTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMCA 61
Query: 67 K-HSLDGRTVEAKRAMSREE 85
+ H +DGR VE KRA+SRE+
Sbjct: 62 RPHKVDGRVVEPKRAVSRED 81
Score = 121 (47.7 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 27/80 (33%), Positives = 46/80 (57%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+++F+GGL ED R+ FE G + D V+M D P+ FGF+++ + VD +
Sbjct: 7 RRLFIGGLSFETIEDSLREGFEM-GTLADCVVMRD-----PQSFGFVTYSCVEEVDAAMC 60
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 61 ARPHKVDGRVVEPKRAVSRE 80
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 165 (63.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSREEQ 86
H +DGR + K S++ Q
Sbjct: 166 HMIDGRWCDCKLPNSKQSQ 184
Score = 98 (39.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +TED R++F YG V DV I +P R F F++F +D + + L
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFI------PKPFRAFAFVTF-ADDQIAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 165 (63.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSREEQ 86
H +DGR + K S++ Q
Sbjct: 166 HMIDGRWCDCKLPNSKQSQ 184
Score = 98 (39.6 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +TED R++F YG V DV I +P R F F++F +D + + L
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFI------PKPFRAFAFVTF-ADDQIAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>ZFIN|ZDB-GENE-030131-3777 [details] [associations]
symbol:tardbp "TAR DNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007626 "locomotory behavior" evidence=IMP] [GO:0048675 "axon
extension" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-3777 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007626 GO:GO:0003676 GO:GO:0048675 HSSP:Q14103 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
OrthoDB:EOG447FTT GeneTree:ENSGT00570000079202 EMBL:BX663614
EMBL:BC049348 IPI:IPI00495103 RefSeq:NP_958884.1 UniGene:Dr.2409
SMR:Q802C7 STRING:Q802C7 Ensembl:ENSDART00000058555 GeneID:325052
KEGG:dre:325052 InParanoid:Q802C7 NextBio:20809098 Uniprot:Q802C7
Length = 412
Score = 165 (63.1 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
D L + G+ W+TSE+ L++YF +G+V+ V R+ TG +GFGFV F D
Sbjct: 106 DQKTSDLIVLGLPWKTSEQDLKDYFGTFGEVIMVQVKRDVKTGNSKGFGFVRFGDWETQS 165
Query: 62 RVLQDKHSLDGRTVEAKRAMSRE 84
+V+ +H +DGR + K S++
Sbjct: 166 KVMTQRHMIDGRWCDCKLPNSKQ 188
Score = 105 (42.0 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 30/83 (36%), Positives = 40/83 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D RQ+F YG VTDV I +P R F F++F +D V L
Sbjct: 197 RKVFVGRCTEDMTADELRQFFMQYGEVTDVFI------PKPFRAFAFVTF-ADDQVAAAL 249
Query: 169 QKTFHDLNGKQVEVKRALPKDAN 191
+ G V + A PK N
Sbjct: 250 CGEDLIIKGVSVHISNAEPKHNN 272
>FB|FBgn0025790 [details] [associations]
symbol:TBPH "TAR DNA-binding protein-43 homolog" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0048812 "neuron projection
morphogenesis" evidence=IMP] [GO:0008344 "adult locomotory
behavior" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0007417 "central nervous system
development" evidence=IMP] [GO:0045886 "negative regulation of
synaptic growth at neuromuscular junction" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0007528 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0008344 GO:GO:0045886 EMBL:AB010261
HSSP:Q61474 eggNOG:NOG145464 EMBL:AB019705 EMBL:AB019706 SMR:O97468
IntAct:O97468 STRING:O97468 UCSC:CG10327-RC FlyBase:FBgn0025790
InParanoid:O97468 OrthoDB:EOG4QNKC2 Uniprot:O97468
Length = 531
Score = 166 (63.5 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+EE LREYF YG+VL + ++ +G+ +GFGFV F RVL ++
Sbjct: 109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNR 168
Query: 68 HSLDGRTVEAK 78
H +DGR E K
Sbjct: 169 HLIDGRWCEVK 179
Score = 131 (51.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 30/72 (41%), Positives = 41/72 (56%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+ V GLP TE+ R+YFE YG V I D + + +GFGF+ F + DA RVL
Sbjct: 109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNR 168
Query: 172 FHDLNGKQVEVK 183
H ++G+ EVK
Sbjct: 169 -HLIDGRWCEVK 179
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+G + + + + LREYFS++G+V + R R F FV F DP + + +
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF-----RAFSFVTFLDPDVAQSLCGE 247
Query: 67 KHSLDGRTVEAKRAMSREEQ 86
H + G +V A + EQ
Sbjct: 248 DHIIKGVSVHVSNAAPKAEQ 267
Score = 107 (42.7 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 28/79 (35%), Positives = 37/79 (46%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVLQ 169
K+FVG + D R+YF +G VTDV I RP R F F++F D +
Sbjct: 193 KVFVGRCTEDINSDDLREYFSKFGEVTDVFI------PRPFRAFSFVTFLDPDVAQSLCG 246
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ H + G V V A PK
Sbjct: 247 ED-HIIKGVSVHVSNAAPK 264
>UNIPROTKB|F1LUF2 [details] [associations]
symbol:F1LUF2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00952415
Ensembl:ENSRNOT00000042380 Uniprot:F1LUF2
Length = 238
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 50/131 (38%), Positives = 72/131 (54%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+E ++E LR +F Q+G + +VVMR+ T R GFGFV +A +D + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ H +D R +E KRA+SRE+ + + KKIFVG + E
Sbjct: 61 RPHKVDERVLEPKRAVSREDSERTGTHLTV--------------KKIFVGVVKEDTEEHH 106
Query: 126 FRQYFEAYGHV 136
R YFE YG +
Sbjct: 107 LRDYFEQYGKI 117
Score = 165 (63.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 30/79 (37%), Positives = 53/79 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G R +FE +G +T+ V+M D NT+R GFGF+++ T + VD + +
Sbjct: 1 KLFIGGLSFEKTDEGLRSHFEQWGTLTNSVVMRDPNTKRSGGFGFVTYATVEEVDAAMNE 60
Query: 171 TFHDLNGKQVEVKRALPKD 189
H ++ + +E KRA+ ++
Sbjct: 61 RPHKVDERVLEPKRAVSRE 79
Score = 123 (48.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVG + E R YFE YG + Q + GF F +FD D+VD+++
Sbjct: 91 KKIFVGVVKEDTEEHHLRDYFEQYGKI--------QRQWKKEGFCFFTFDDHDSVDKIVI 142
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ +H + G EV++ L K
Sbjct: 143 QKYHTVGGHTCEVRKPLSK 161
Score = 121 (47.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+G + +T E LR+YF QYG + R+ + GF F F D +D+ V+Q
Sbjct: 92 KIFVGVVKEDTEEHHLRDYFEQYGKI-----QRQ---WKKEGFCFFTFDDHDSVDKIVIQ 143
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H++ G T E ++ +S++E
Sbjct: 144 KYHTVGGHTCEVRKPLSKQE 163
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +DGR VE KRA+SRE+ Q
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ 96
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/80 (41%), Positives = 54/80 (67%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 74 ARPHKVDGRVVEPKRAVSRE 93
>UNIPROTKB|G3N220 [details] [associations]
symbol:G3N220 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00700000104376 EMBL:DAAA02027300
Ensembl:ENSBTAT00000063435 OMA:GWEDRSH Uniprot:G3N220
Length = 310
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 52/151 (34%), Positives = 76/151 (50%)
Query: 38 MREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXX 97
MR+ T R RGFGFV ++ +D + + R VE KRA+SRE+
Sbjct: 1 MRDPKTKRSRGFGFVTYSCVEEVDAAMYARPHK--RVVEPKRAVSREDS----------- 47
Query: 98 XXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFIS 157
KKIFVGG+ E R FE YG + + +M D+ + + RG F++
Sbjct: 48 ---VKPGAHLTVKKIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVT 104
Query: 158 FDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
FD D VD+++ + +H +NG EVK+AL K
Sbjct: 105 FDDHDTVDKIVVQKYHTINGHNCEVKKALSK 135
Score = 168 (64.2 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 31/82 (37%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GGI +T E LR+ F YG + VM ++ +G+ RG FV F D +D+++
Sbjct: 58 KIFVGGIKEDTEEYNLRDCFENYGKIETIEVMEDRQSGKKRGCAFVTFDDHDTVDKIVVQ 117
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H+++G E K+A+S++E Q
Sbjct: 118 KYHTINGHNCEVKKALSKQEMQ 139
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 35/80 (43%), Positives = 60/80 (75%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D+GK+FIGG+SW+T+++ L++YFS++G+V+ + + TGR RGFGFV+F + +D
Sbjct: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 62 RVLQDK-HSLDGRTVEAKRA 80
+V+ K H L+G+ ++ KRA
Sbjct: 134 KVMDQKEHKLNGKVIDPKRA 153
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T+ + YF +G V D + D T R RGFGF+ F ++VD+V+ +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 171 TFHDLNGKQVEVKRA 185
H LNGK ++ KRA
Sbjct: 139 KEHKLNGKVIDPKRA 153
>UNIPROTKB|F1MTY3 [details] [associations]
symbol:F1MTY3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:DAAA02006340
IPI:IPI00699446 Ensembl:ENSBTAT00000013110 Uniprot:F1MTY3
Length = 301
Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
Identities = 53/153 (34%), Positives = 76/153 (49%)
Query: 37 VMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXX 95
VM + T RGF FV +A +D + + H +D R VE KR +SRE Q
Sbjct: 41 VMTDPNTKCSRGFRFVTYATVEEVDAAMNARPHKVDRRVVEPKRGVSREGSQRPGAHLTV 100
Query: 96 XXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGF 155
KKIF GG+ E R YFE G + + IM D ++ + RGF F
Sbjct: 101 --------------KKIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAF 146
Query: 156 ISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
++FD D+VD+ + + +H +NG EV++AL K
Sbjct: 147 VTFDDHDSVDKTVIQKYHTVNGHNREVRKALSK 179
Score = 159 (61.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F GGI +T E LR+YF G + +M + ++G+ RGF FV F D +D+ V+Q
Sbjct: 102 KIFAGGIKEDTEERHLRDYFENNGKIEVIEIMTDPSSGKKRGFAFVTFDDHDSVDKTVIQ 161
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 162 KYHTVNGHNREVRKALSKQE 181
Score = 137 (53.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR + S + VM + T RGF FV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHCSHS----PSCVMTDPNTKCSRGFRFVTYATVEEVDAAMNA 70
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +D R VE KR +SRE Q
Sbjct: 71 RPHKVDRRVVEPKRGVSREGSQ 92
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 171 (65.3 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 34 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 93
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 94 KKYHNVGLSKCEIKVAMSKE 113
Score = 148 (57.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 94
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 95 KYHNVGLSKCEIKVAMSKEQYQ 116
Score = 52 (23.4 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 60 LDRVLQDK-HSLDGRTVEAKRAMSREEQQ 87
+D+V+ K H L+G+ ++ KRA + + ++
Sbjct: 3 VDKVMDQKEHKLNGKVIDPKRAKAMKTKE 31
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 60/168 (35%), Positives = 84/168 (50%)
Query: 7 KLFIGGISWETSEERLR--EYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL 64
KLF+GG+S+E + E L +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAM 74
Query: 65 QDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTE 123
+ H + GR VE KRA S++ Q+ A KKIFVGG+ E
Sbjct: 75 NARPHKVGGRAVEPKRAGSKDSQRPGAHLTM---------------KKIFVGGVKEDTEE 119
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE-DAVDRVLQK 170
R Y E G I D+ + + R F F++FD D + V+QK
Sbjct: 120 HRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFDNSVDKI--VIQK 164
Score = 168 (64.2 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 110 KKIFVGGLP--PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+K+FVGGL TL +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 14 QKLFVGGLSFEATLESLSLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAA 73
Query: 168 LQKTFHDLNGKQVEVKRALPKDA 190
+ H + G+ VE KRA KD+
Sbjct: 74 MNARPHKVGGRAVEPKRAGSKDS 96
Score = 137 (53.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+ +T E RLR+Y Q G T + ++ +G+ R F FV F D S+ D+++
Sbjct: 107 KIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTF-DNSV-DKIVIQ 163
Query: 67 KHS-LDGRTVEAKRAMSREE 85
K+S ++G E ++A+S++E
Sbjct: 164 KYSTVNGHNCEVRKALSKQE 183
Score = 120 (47.3 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ E R Y E G I D+ + + R F F++FD ++VD+++
Sbjct: 106 KKIFVGGVKEDTEEHRLRDYLEQNGKTEVTEITTDRGSGK-RDFAFVTFD--NSVDKIVI 162
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ + +NG EV++AL K
Sbjct: 163 QKYSTVNGHNCEVRKALSK 181
>UNIPROTKB|L7N0C2 [details] [associations]
symbol:L7N0C2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA]
GeneTree:ENSGT00550000074566 EMBL:AAEX03014397
Ensembl:ENSCAFT00000016130 Uniprot:L7N0C2
Length = 278
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 46/121 (38%), Positives = 66/121 (54%)
Query: 68 HSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDGFR 127
H +DGR VE KRA+SRE+ Q KKIFVGG+ E R
Sbjct: 41 HKVDGRVVEPKRAVSREDSQRPGAHLTV--------------KKIFVGGIKEDTEEHHLR 86
Query: 128 QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187
YFE YG + + IM + + + RGF F++FD D+VD+++ + +H +NG EV++AL
Sbjct: 87 DYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 146
Query: 188 K 188
K
Sbjct: 147 K 147
Score = 175 (66.7 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR-VLQ 65
K+F+GGI +T E LR+YF QYG + +M + +G+ RGF FV F D +D+ V+Q
Sbjct: 70 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTGRGSGKKRGFAFVTFDDHDSVDKIVIQ 129
Query: 66 DKHSLDGRTVEAKRAMSREE 85
H+++G E ++A+S++E
Sbjct: 130 KYHTVNGHNCEVRKALSKQE 149
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 49/127 (38%), Positives = 66/127 (51%)
Query: 38 MREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMSREEQQFSAXXXXXX 96
MR+ T R RGFGFV +A +D + + H +DGR VE KRA+SRE+ Q
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV- 59
Query: 97 XXXXXXXXXXXXXKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156
KKIFVGG+ E R YFE YG + + IM D+ + + RGF F+
Sbjct: 60 -------------KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFV 106
Query: 157 SFDTEDA 163
+FD D+
Sbjct: 107 TFDDHDS 113
Score = 131 (51.2 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD 56
K+F+GGI +T E LR+YF QYG + +M ++ +G+ RGF FV F D
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 110
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 142 MYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
M D NT+R RGFGF+++ T + VD + H ++G+ VE KRA+ ++
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRE 48
>UNIPROTKB|Q13148 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008219 "cell
death" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0008219 EMBL:CH471130 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0006366 GO:GO:0003730 GO:GO:0003690
Orphanet:803 eggNOG:COG0724 GO:GO:0043922 Orphanet:275872
GO:GO:0070935 EMBL:AL109811 CTD:23435 HOVERGEN:HBG058671
OrthoDB:EOG447FTT EMBL:U23731 EMBL:EF434181 EMBL:EF434182
EMBL:EF434183 EMBL:AK312416 EMBL:CR533534 EMBL:AK222754
EMBL:AL050265 EMBL:BC071657 EMBL:BC095435 IPI:IPI00025815
IPI:IPI00844544 IPI:IPI00971018 PIR:I38977 RefSeq:NP_031401.1
UniGene:Hs.300624 PDB:1WF0 PDB:2CQG PDBsum:1WF0 PDBsum:2CQG
ProteinModelPortal:Q13148 SMR:Q13148 DIP:DIP-31167N IntAct:Q13148
STRING:Q13148 PhosphoSite:Q13148 DMDM:20140568 PaxDb:Q13148
PRIDE:Q13148 DNASU:23435 Ensembl:ENST00000240185 GeneID:23435
KEGG:hsa:23435 UCSC:uc001art.3 GeneCards:GC01P011006
HGNC:HGNC:11571 HPA:CAB003703 HPA:HPA017284 MIM:605078 MIM:612069
neXtProt:NX_Q13148 PharmGKB:PA36336 InParanoid:Q13148 OMA:QFFSQYG
PhylomeDB:Q13148 ChiTaRS:TARDBP EvolutionaryTrace:Q13148
GenomeRNAi:23435 NextBio:45695 ArrayExpress:Q13148 Bgee:Q13148
CleanEx:HS_TARDBP Genevestigator:Q13148 GermOnline:ENSG00000120948
Uniprot:Q13148
Length = 414
Score = 165 (63.1 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSREEQ 86
H +DGR + K S++ Q
Sbjct: 166 HMIDGRWCDCKLPNSKQSQ 184
Score = 98 (39.6 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +TED R++F YG V DV I +P R F F++F +D + + L
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDVMDVFI------PKPFRAFAFVTF-ADDQIAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>FB|FBgn0036496 [details] [associations]
symbol:CG7804 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P09651 eggNOG:NOG145464
GeneTree:ENSGT00570000079202 EMBL:AY118452 RefSeq:NP_648764.1
UniGene:Dm.13628 SMR:Q9VUN2 EnsemblMetazoa:FBtr0075617
EnsemblMetazoa:FBtr0332815 GeneID:39665 KEGG:dme:Dmel_CG7804
UCSC:CG7804-RA FlyBase:FBgn0036496 InParanoid:Q9VUN2 OMA:EPKHNNS
OrthoDB:EOG43XSK6 GenomeRNAi:39665 NextBio:814765 Uniprot:Q9VUN2
Length = 318
Score = 166 (63.5 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+S+ T+E+ LREYF YGDV++ + ++ +G +GFGFV F + VL +
Sbjct: 109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKR 168
Query: 68 HSLDGRTVEAKRAMSR 83
HS+DGR E K SR
Sbjct: 169 HSIDGRWCEVKVPASR 184
Score = 124 (48.7 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/72 (38%), Positives = 37/72 (51%)
Query: 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171
+ V GL TE R+YFE YG V I D + +GFGF+ F + D VL K
Sbjct: 109 LIVLGLSYNTTEQDLREYFETYGDVVKAEIKKDTRSGHSKGFGFVRFGSYDVQMHVLSKR 168
Query: 172 FHDLNGKQVEVK 183
H ++G+ EVK
Sbjct: 169 -HSIDGRWCEVK 179
Score = 114 (45.2 bits), Expect = 0.00031, P = 0.00031
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ + GK+F+G + + + LREYFS++G+V+ + + R F FV F DP +
Sbjct: 188 NQEPGKVFVGRCTEDIEADDLREYFSKFGEVIDVFIPKPF-----RAFSFVTFLDPYVPR 242
Query: 62 RVLQDKHSLDGRTVEAKRAMSREEQ 86
V +KH + G +V A + Q
Sbjct: 243 VVCGEKHIIKGVSVHVSTADKKNVQ 267
Score = 90 (36.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVLQ 169
K+FVG + D R+YF +G V DV I +P R F F++F + V RV+
Sbjct: 193 KVFVGRCTEDIEADDLREYFSKFGEVIDVFI------PKPFRAFSFVTF-LDPYVPRVVC 245
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H + G V V A K+
Sbjct: 246 GEKHIIKGVSVHVSTADKKN 265
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 37/73 (50%), Positives = 56/73 (76%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E L+EYF ++G+V + +VMR+ T R RGFGFV + D + +D+V
Sbjct: 20 DPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKV 79
Query: 64 L-QDKHSLDGRTV 75
L Q++H LD +TV
Sbjct: 80 LAQNRHELDSKTV 92
Score = 156 (60.0 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 28/70 (40%), Positives = 47/70 (67%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL T++G ++YF +G V + ++M D T+R RGFGF+++ + VD+VL +
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQ 82
Query: 171 TFHDLNGKQV 180
H+L+ K V
Sbjct: 83 NRHELDSKTV 92
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 171 (65.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 28 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 87
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 88 KKYHNVGLSKCEIKVAMSKE 107
Score = 148 (57.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 29 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 88
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 89 KYHNVGLSKCEIKVAMSKEQYQ 110
Score = 46 (21.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 65 QDKHSLDGRTVEAKRAMSREEQQ 87
Q +H L+G+ ++ KRA + + ++
Sbjct: 3 QKEHKLNGKVIDPKRAKAMKTKE 25
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 171 (65.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL P E+ R+YF +G V + + D T + RGF FI+F E+ V ++++
Sbjct: 29 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 88
Query: 170 KTFHDLNGKQVEVKRALPKD 189
K +H++ + E+K A+ K+
Sbjct: 89 KKYHNVGLSKCEIKVAMSKE 108
Score = 148 (57.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 29/82 (35%), Positives = 51/82 (62%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +T EE++REYF +G+V + + T + RGF F+ F + + ++++
Sbjct: 30 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 89
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
K H++ E K AMS+E+ Q
Sbjct: 90 KYHNVGLSKCEIKVAMSKEQYQ 111
Score = 46 (21.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 65 QDKHSLDGRTVEAKRAMSREEQQ 87
Q +H L+G+ ++ KRA + + ++
Sbjct: 4 QKEHKLNGKVIDPKRAKAMKTKE 26
>UNIPROTKB|F1M5K3 [details] [associations]
symbol:F1M5K3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 IPI:IPI00567346
Ensembl:ENSRNOT00000044298 Uniprot:F1M5K3
Length = 327
Score = 154 (59.3 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFI G S+ET+ E LR +F ++G VMR+ T R R FGFV++A +D +
Sbjct: 35 KLFIRG-SFETTNESLRSHFEEWG-TFTDCVMRDLNTKRFRDFGFVIYATVEEVDAAMNA 92
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ +DGR VE K AMSRE+ Q
Sbjct: 93 RPRKVDGRLVEPKSAMSREKSQ 114
Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+ G T T + R +FE +G TD V M D NT+R R FGF+ + T + VD +
Sbjct: 34 RKLFIRGSFET-TNESLRSHFEEWGTFTDCV-MRDLNTKRFRDFGFVIYATVEEVDAAMN 91
Query: 170 KTFHDLNGKQVEVKRALPKD 189
++G+ VE K A+ ++
Sbjct: 92 ARPRKVDGRLVEPKSAMSRE 111
Score = 104 (41.7 bits), Expect = 2.7e-16, Sum P(2) = 2.7e-16
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGG+ ED + + IM D+ + R R F F++FD D+VD+++
Sbjct: 123 KKIFVGGIK----EDTEKHH-----------IMTDRGSGRKRDFAFVAFDDHDSVDKIVI 167
Query: 170 KTFHDLNGKQVEVKRALPK 188
+ + +NG+ EV++ L K
Sbjct: 168 QKYCTVNGQNCEVRKTLSK 186
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 182 (69.1 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 30/87 (34%), Positives = 58/87 (66%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 78 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 137
Query: 62 RVLQDKHSLD-GRTVEAKRAMSREEQQ 87
+V++ K + G K R++ +
Sbjct: 138 KVIEIKQRREYGLECGPKEIAKRQKDK 164
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++V++
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVIE 141
Score = 56 (24.8 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 155 FISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
FI F E+ V L K ++G + E+K A PK+
Sbjct: 213 FIDFSVEEPVRASLVKLLVVISGSRCEIKVAQPKE 247
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/189 (26%), Positives = 87/189 (46%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ- 65
KLF+G + + +L + F G+V V+ +K TGR RGFGFV + S ++ Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 66 -DKHSLDGRT--VEAKRAMSREEQQFS-----AXXXXXXXXXXXXXXXXXXXKKIFVGGL 117
+ + LDGR V A + E FS + +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 118 PPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFH-DLN 176
+ + F G V + ++YD+++ R +GFGF+++D+ V ++ DL+
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLD 271
Query: 177 GKQVEVKRA 185
G+Q+ V A
Sbjct: 272 GRQIRVSEA 280
Score = 123 (48.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVG LP + Q FE+ G+V V ++YD+ T R RGFGF++ + V+ Q+
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 171 -TFHDLNGKQVEVKRALP 187
++L+G+ + V P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 196 (74.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 47/179 (26%), Positives = 85/179 (47%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
+F+ +E+L FS++G++ VVM + G+P+GFGFV FAD + ++
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 68 HS--LDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGLPPTLTEDG 125
+ L+G + ++++ + SA ++V + L +DG
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDG 358
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT-EDAVDRVLQKTFHDLNGKQVEVK 183
R +F ++G +T +M D+N R +GFGF+ F+ E+A V D+N K + K
Sbjct: 359 LRDHFSSFGTITSAKVMVDENG-RSKGFGFVCFEKPEEATAAVT-----DMNSKMIGAK 411
Score = 39 (18.8 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 294 PNTGYASGPPGAPR 307
P G A P GAPR
Sbjct: 524 PQYGMAPRPAGAPR 537
>UNIPROTKB|I3L7S7 [details] [associations]
symbol:LOC100621383 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00570000079202 Ensembl:ENSSSCT00000025708
Uniprot:I3L7S7
Length = 275
Score = 159 (61.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 39 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 98
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 99 HMIDGRWCDCKLPNSKQ 115
Score = 90 (36.7 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D +Q+F YG V DV I +P R F F++F +D V + L
Sbjct: 124 RKVFVGRCTEDMTADELQQFFCQYGEVVDVFI------PKPFRAFAFVTF-ADDQVAQSL 176
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 177 CGEDLIIKGISVHISNAEPK 196
>UNIPROTKB|F1RVD1 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 EMBL:CU627987
RefSeq:XP_003129409.3 UniGene:Ssc.55768 Ensembl:ENSSSCT00000010127
GeneID:100511704 KEGG:ssc:100511704 Uniprot:F1RVD1
Length = 216
Score = 168 (64.2 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KK+FVGGL P +E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+
Sbjct: 29 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 88
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+H + + E+K A PK+
Sbjct: 89 SRYHQIGSGKCEIKVAQPKE 108
Score = 132 (51.5 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S +TSEE+++EYF +G++ + + T RGF F+ + D + ++L+
Sbjct: 30 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 89
Query: 67 K-HSLDGRTVEAKRAMSRE 84
+ H + E K A +E
Sbjct: 90 RYHQIGSGKCEIKVAQPKE 108
Score = 45 (20.9 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 63 VLQDK-HSLDGRTVEAKRA 80
VL+ K H LDG+ ++ KRA
Sbjct: 1 VLELKEHKLDGKLIDPKRA 19
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 163 (62.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F D +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 166 HMIDGRWCDCKLPNSKQ 182
Score = 93 (37.8 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D +Q+F YG V DV I +P R F F++F +D V + L
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFI------PKPFRAFAFVTF-ADDQVAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 163 (62.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F D +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 166 HMIDGRWCDCKLPNSKQ 182
Score = 93 (37.8 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D +Q+F YG V DV I +P R F F++F +D V + L
Sbjct: 191 RKVFVGRCTEDMTADELQQFFAQYGEVVDVFI------PKPFRAFAFVTF-ADDQVAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|E2REM2 [details] [associations]
symbol:E2REM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027720 Uniprot:E2REM2
Length = 207
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 41/82 (50%), Positives = 57/82 (69%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F ++G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHF-EWGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73
Query: 67 K-HSLDGRTVEAKRAMSREEQQ 87
+ H +DGR VE KRA+SRE+ Q
Sbjct: 74 RPHKVDGRVVEPKRAVSREDSQ 95
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 32/80 (40%), Positives = 53/80 (66%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL T++ R +FE +G +T V+M D NT+R RGFGF+++ T + VD +
Sbjct: 14 QKLFIGGLSFETTDESLRSHFE-WGTLTGCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 73 ARPHKVDGRVVEPKRAVSRE 92
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 203 (76.5 bits), Expect = 8.7e-16, P = 8.7e-16
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 2 DSD--QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVF--ADP 57
DSD Q KLFI G++ +T+ E LR FS YGD+ + +V+ +K TG+ +G+GFV F D
Sbjct: 69 DSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDG 128
Query: 58 SILDRVLQDKHSLDGRTVEAKRAMSREEQQFSAXXXXXXXXXXXXXXXXXXXKKIFVGGL 117
++L + + +DGR + A S + S +KI+V +
Sbjct: 129 ALL-ALKEPSKKIDGRVTVTQLAASGNQGTGSQIADISM-------------RKIYVANV 174
Query: 118 PPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG 177
P + D +F AYG V + + +D+ T + RGF + T + L ++G
Sbjct: 175 PFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDG 234
Query: 178 KQVEVKRAL 186
K + K A+
Sbjct: 235 KHLNCKLAV 243
>UNIPROTKB|Q2KJ45 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG145464
HOGENOM:HOG000254792 HOVERGEN:HBG058671 OrthoDB:EOG447FTT
GeneTree:ENSGT00570000079202 EMBL:DAAA02042967 EMBL:DAAA02042968
UniGene:Bt.106561 EMBL:BC105527 IPI:IPI00695185 SMR:Q2KJ45
STRING:Q2KJ45 Ensembl:ENSBTAT00000033464 InParanoid:Q2KJ45
Uniprot:Q2KJ45
Length = 298
Score = 156 (60.0 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L++YFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 166 HMIDGRWCDCKLPNSKQ 182
Score = 94 (38.1 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D RQ+F YG V DV I +P R F F++F +D V + L
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFI------PKPFRAFAFVTF-ADDQVAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>UNIPROTKB|F1NSZ7 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AADN02043198 EMBL:AADN02043199
EMBL:AADN02043200 EMBL:AADN02043201 IPI:IPI00576372
Ensembl:ENSGALT00000008924 ArrayExpress:F1NSZ7 Uniprot:F1NSZ7
Length = 262
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 36/80 (45%), Positives = 55/80 (68%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
KKIFVGGL T + +QYFE +G VT ++ +D+ + R FGF++F++ED V++V +
Sbjct: 20 KKIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCE 79
Query: 170 KTFHDLNGKQVEVKRALPKD 189
FH++N K VE K+A PK+
Sbjct: 80 IHFHEINNKMVECKKAQPKE 99
Score = 132 (51.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG+S T+ E +++YF Q+G V ++ ++ R FGFV F I+++V +
Sbjct: 21 KIFVGGLSVNTTVEDVKQYFEQFGKVTSKILGFDREKKSFRWFGFVTFESEDIVEKVCEI 80
Query: 67 K-HSLDGRTVEAKRAMSRE 84
H ++ + VE K+A +E
Sbjct: 81 HFHEINNKMVECKKAQPKE 99
>UNIPROTKB|E2QS43 [details] [associations]
symbol:TARDBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043922 "negative regulation by host of viral
transcription" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0003690 "double-stranded DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690
GO:GO:0043922 GO:GO:0070935 CTD:23435 OMA:QFFSQYG
GeneTree:ENSGT00570000079202 EMBL:AAEX03001938 RefSeq:XP_535409.3
Ensembl:ENSCAFT00000026536 GeneID:478234 KEGG:cfa:478234
NextBio:20853591 Uniprot:E2QS43
Length = 414
Score = 159 (61.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L+EYFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 166 HMIDGRWCDCKLPNSKQ 182
Score = 94 (38.1 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 28/80 (35%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T D RQ+F YG V DV I +P R F F++F +D V + L
Sbjct: 191 RKVFVGRCTEDMTADELRQFFCQYGEVVDVFI------PKPFRAFAFVTF-ADDQVAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
D+ K+F+GG++WET E LR +F QYGD+L+ VV+ +K TGR +G+GFV F DP
Sbjct: 20 DTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 62 RVLQDKHSL-DGRTVEAKRAM---SREEQQFS 89
R D + DGR A SR Q++
Sbjct: 80 RACVDPTPIIDGRRANCNLASLGRSRPPMQYA 111
Score = 122 (48.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL + R++F+ YG + + V++ D+NT R +G+GF++F +A R
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 171 TFHDLNGKQVEVKRA 185
++G++ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>RGD|1310906 [details] [associations]
symbol:Tardbp "TAR DNA binding protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA;ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0034976 "response to endoplasmic reticulum stress"
evidence=IEP] [GO:0035061 "interchromatin granule" evidence=IDA]
[GO:0043922 "negative regulation by host of viral transcription"
evidence=IEA;ISO] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310906 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0034976 EMBL:CH473968
GO:GO:0005726 GO:GO:0035061 CTD:23435 GeneTree:ENSGT00570000079202
EMBL:BC083752 RefSeq:NP_001011979.1 UniGene:Rn.2633
Ensembl:ENSRNOT00000049822 GeneID:298648 KEGG:rno:298648
Uniprot:I6L9G6
Length = 285
Score = 157 (60.3 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 28/77 (36%), Positives = 48/77 (62%)
Query: 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67
L + G+ W+T+E+ L++YFS +G+VL V ++ TG +GFGFV F + +V+ +
Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 165
Query: 68 HSLDGRTVEAKRAMSRE 84
H +DGR + K S++
Sbjct: 166 HMIDGRWCDCKLPNSKQ 182
Score = 86 (35.3 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP-RGFGFISFDTEDAVDRVL 168
+K+FVG +T + +Q+F YG V DV I +P R F F++F +D V + L
Sbjct: 191 RKVFVGRCTEDMTAEELQQFFCQYGEVVDVFI------PKPFRAFAFVTF-ADDKVAQSL 243
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ G V + A PK
Sbjct: 244 CGEDLIIKGISVHISNAEPK 263
WARNING: HSPs involving 879 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 456 258 0.00087 114 3 11 23 0.38 34
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1129
No. of states in DFA: 597 (63 KB)
Total size of DFA: 186 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.89u 0.30s 17.19t Elapsed: 00:00:01
Total cpu time: 16.92u 0.30s 17.22t Elapsed: 00:00:01
Start: Fri May 10 11:21:36 2013 End: Fri May 10 11:21:37 2013
WARNINGS ISSUED: 2