BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035855
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 237/382 (62%), Positives = 276/382 (72%), Gaps = 16/382 (4%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
MDSDQGKLF+GGISWET E++LRE+F+ YG+V Q +VMR+K TGRPRGFGFV+F+DPS+L
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT 120
DRVLQ+KHS+D R V+ KRAMSREEQQ S R+GN N+ RS+GG +TKKIFVGGLPPT
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
LT++ FRQYFE YG VTDV IMYDQ T RPRGFGF+SFD+EDAVD VL KTFHDL+GKQV
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 181 EVKRALPKDANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFEGRMESNRYMQPQNPG 240
EVKRALPKDANPGGG RSMGGGG GG GGN S+++GRM+SNR++Q Q+ G
Sbjct: 181 EVKRALPKDANPGGGGRSMGGGGSGGY-------QGYGGNESSYDGRMDSNRFLQHQSVG 233
Query: 241 SGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNAGYGGPAGTPYGNPNVPNTGYAS 300
+G P S +GYG G SN GYG YG Y G+ GYG A YG N+P GY S
Sbjct: 234 NGL-PSYGSSGYGAGYGNG--SNGAGYGAYGGYTGSAGGYGAGATAGYGATNIPGAGYGS 290
Query: 301 GPPGAPRSSWGTQTPSGYGAMGYGNAAAWGAGGSSGGPGSAHAGQSPSGATGYGNQGYGY 360
APR+SW T SGYG GYG+ AA G PG+A QSPSG + G
Sbjct: 291 STGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGV---PGAAPPTQSPSGYSNQGYGY--- 344
Query: 361 GGYGGSDGSYGNPSGYGAVGGR 382
GGY GSD YGN + YG VGGR
Sbjct: 345 GGYSGSDSGYGNQAAYGVVGGR 366
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 135/211 (63%), Gaps = 18/211 (8%)
Query: 1 MDSDQ-GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSI 59
M+ D+ GKLF+GG+SWET++E L YF ++GD++ VVM+ +GR RGFGFV FADP+
Sbjct: 1 MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTN 60
Query: 60 LDRVLQD-KHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLP 118
++ VLQ+ H+LDGRT++ K R Q + GGG K+F+GGLP
Sbjct: 61 VNHVLQNGPHTLDGRTIDPKPCNPRTLQ------------KPKKGGGY----KVFLGGLP 104
Query: 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178
+TE R +F YG VT+VVIMYDQ ++ RGFGF+SF+ E +V+ V + + +LNGK
Sbjct: 105 SNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGK 164
Query: 179 QVEVKRALPKDANPGGGSRSMGGGGGGGGFG 209
QVE+K+A P+D + G S + GG G G
Sbjct: 165 QVEIKKAEPRDGSGGQNSNNSTVGGAYGKLG 195
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 192 bits (487), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 134/225 (59%), Gaps = 25/225 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q H LD +T++ K A R Q RTKKIFVGGL
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTV 122
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC 182
Query: 183 KRALPKDANPGGGSR--------SMGGGGGGGGFGGYQGYGASGG 219
K+A PK+ G+R +M G G GY + A+ G
Sbjct: 183 KKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG 227
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 134/225 (59%), Gaps = 25/225 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS + LR+YFS++G++ + +VMR+ TT R RGFGFV FADP+ +D+V
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q H LD +T++ K A R Q RTKKIFVGGL
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSANTV 122
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE +G V D ++M+D+ T R RGFGF++F+ ED V++V + FH++N K VE
Sbjct: 123 VEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVEC 182
Query: 183 KRALPKDANPGGGSR--------SMGGGGGGGGFGGYQGYGASGG 219
K+A PK+ G+R +M G G GY + A+ G
Sbjct: 183 KKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG 227
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 127/189 (67%), Gaps = 7/189 (3%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSR--EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
+ H+LDGR ++ K R + ++ + G RS+ ++ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSS----KSNKIFVGGIPHNCG 125
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEV
Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 183 KRALPKDAN 191
KRA P+D+
Sbjct: 186 KRAEPRDSK 194
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDR 62
S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D+
Sbjct: 110 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169
Query: 63 VL-QDKHSLDGRTVEAKRAMSREEQ 86
+ H + G+ VE KRA R+ +
Sbjct: 170 AVNMHFHDIMGKKVEVKRAEPRDSK 194
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 88/189 (46%), Positives = 127/189 (67%), Gaps = 7/189 (3%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAKRAMSR--EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
+ H+LDGR ++ K R + ++ + G RS+ ++ KIFVGG+P
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS----KSNKIFVGGIPHNCG 125
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E R+YF+ +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+ GK+VEV
Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 185
Query: 183 KRALPKDAN 191
KRA P+D+
Sbjct: 186 KRAEPRDSK 194
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E LREYF ++G V + V++ + RPRGFGF+ F D +D
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 62 RVL-QDKHSLDGRTVEAKRAMSREEQ 86
+ + H + G+ VE KRA R+ +
Sbjct: 169 QAVNMHFHDIMGKKVEVKRAEPRDSK 194
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 81/185 (43%), Positives = 122/185 (65%), Gaps = 20/185 (10%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
+ GK+FIGG++WET+++ LR+YF Q+G+VL VMR+ TTGR RGFGF+ F +P ++ V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 64 LQDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTE 123
+ +H LDG+ ++ KRA+ REEQ+ +T K+FVGG+P TE
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE--------------------KTAKMFVGGVPGDCTE 260
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
+ FR +F +G V D +M D++T RPRGFGF++++ E AV+ + + + ++GK VEVK
Sbjct: 261 EEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVK 320
Query: 184 RALPK 188
RA PK
Sbjct: 321 RATPK 325
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 134/224 (59%), Gaps = 26/224 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q RTKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ +QYFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKDA-NPGGGSR--------SMGGGGGGGGFGGYQGYGAS 217
K+A PK+ +P G +R M G G GY G+ A+
Sbjct: 182 KKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQAT 225
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 141/234 (60%), Gaps = 30/234 (12%)
Query: 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65
GKLF+GG+ W T++E LR YFSQYG+V+ V+M++KTT + RGFGFV F DP+ + VL
Sbjct: 10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLA 69
Query: 66 DK-HSLDGRTVEAK----RAM----SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGG 116
+ H+LDGR ++ K R M SR + + + T + RSN KIFVGG
Sbjct: 70 SRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSN---------KIFVGG 120
Query: 117 LPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLN 176
+P E ++YF +G VT+VV++YD QRPRGFGFI+F+ E +VD+ + FHD+
Sbjct: 121 IPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM 180
Query: 177 GKQVEVKRALPKDAN------PGG---GSRSM---GGGGGGGGFGGYQGYGASG 218
GK+VEVKRA P+D+ PG GSR+M G G +QGY G
Sbjct: 181 GKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQG 234
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S K+F+GGI E L+EYF+++G V + V++ + RPRGFGF+ F D +D
Sbjct: 110 NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169
Query: 62 RVL-QDKHSLDGRTVEAKRAMSRE 84
+ + H + G+ VE KRA R+
Sbjct: 170 QAVNMHFHDIMGKKVEVKRAEPRD 193
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 26/224 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q RTKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKDA-NPGGGSR--------SMGGGGGGGGFGGYQGYGAS 217
K+A PK+ +P G +R M G G GY G+ A+
Sbjct: 182 KKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQAT 225
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 133/224 (59%), Gaps = 26/224 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D K+FIGG+SW+T++E LREYF Q+G+V + +VMR+ T R RGFGFV F D + +D+V
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q +H LD +T++ K A R Q RTKKIFVGGL T
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQP----------------KMVTRTKKIFVGGLSVNTT 121
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G V D ++M+D+ T R RGFGF++F++ED V++V + FH++N K VE
Sbjct: 122 VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVEC 181
Query: 183 KRALPKDA-NPGGGSR--------SMGGGGGGGGFGGYQGYGAS 217
K+A PK+ +P G +R M G G GY G+ A+
Sbjct: 182 KKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQAT 225
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 181 bits (459), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 128/201 (63%), Gaps = 18/201 (8%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS E LR+YF +YGD+ + +VM++ TT R RGFGFV F+DP+ +D+V
Sbjct: 27 DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L Q H LDG+ V+ K A R R++ T RTKKIFVGGL T
Sbjct: 87 LTQGTHELDGKKVDPKVAFPR---------------RAHPKMVT-RTKKIFVGGLSAPTT 130
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
+ + YFE +G + D ++M+D+ T R RGFGF++F +ED VD+V + FH++N K VE
Sbjct: 131 LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVEC 190
Query: 183 KRALPKDAN-PGGGSRSMGGG 202
K+A PK+ P +++ G
Sbjct: 191 KKAQPKEVMLPANLAKTRAAG 211
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 117/188 (62%), Gaps = 20/188 (10%)
Query: 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSIL 60
+ + K+FIGG++W+T+E+ LREYF +YG V +M++ TGR RGFGF+ F PS +
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213
Query: 61 DRVLQDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT 120
D V++ +H LDG+ ++ KRA+ R+EQ +T KIFVGG+ P
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD--------------------KTGKIFVGGIGPD 253
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
+ F ++F +G + D +M D++T + RGFGF+++D+ DAVDRV Q F D +++
Sbjct: 254 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKI 313
Query: 181 EVKRALPK 188
E+KRA P+
Sbjct: 314 EIKRAEPR 321
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 109/183 (59%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 TPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H + G EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKA 180
Query: 186 LPK 188
LPK
Sbjct: 181 LPK 183
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 56/82 (68%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ T H ++G+ VE KRA+ ++
Sbjct: 72 MNTTPHKVDGRVVEPKRAVSRE 93
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LCK 183
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 176 LSRQEMQEVQSSRS----GRGGNF 195
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 21/109 (19%)
Query: 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140
M RE++QF +K+F+GGL TE+ R Y+E +G +TD V
Sbjct: 1 MEREKEQF---------------------RKLFIGGLSFETTEESLRNYYEQWGKLTDCV 39
Query: 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
+M D ++R RGFGF++F + VD + H ++G+ VE KRA+ ++
Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE 88
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 155 bits (391), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 120/203 (59%), Gaps = 16/203 (7%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F Q+G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ SAR G + KKIFVGG+ E
Sbjct: 88 RPHKVDGRVVEPKRAVSRED---SARPG-----------AHLTVKKIFVGGIKEDTEEYH 133
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R Y E+YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 134 LRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 193
Query: 186 LPKDANPGGGSRSMGGGGGGGGF 208
L K ++ G GGGG F
Sbjct: 194 LSKQEMQTASAQR-GRGGGGSNF 215
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 168 LQKTFHDLNGKQVEVKRALPKD--ANPGG 194
+ H ++G+ VE KRA+ ++ A PG
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDSARPGA 113
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 120/203 (59%), Gaps = 17/203 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LRE+F Q+G + VVMR+ + R RGFGFV + +D +
Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ S+ G + KKIFVGG+ ED
Sbjct: 75 RPHKVDGRVVEPKRAVSRED--------------SSRPGAHLTVKKIFVGGIKEDTEEDH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + IM D+ + + RGF F++F+ D+VD+++ + +H +N +V++A
Sbjct: 121 LREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQKYHTVNNHNSQVRKA 180
Query: 186 LPKD--ANPGGGSRSMGGGGGGG 206
L K A+ G R GG G G
Sbjct: 181 LSKQEMASVSGSQRERGGSGNYG 203
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 56/82 (68%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R++FE +G +TD V+M D N++R RGFGF+++ + D VD
Sbjct: 12 QLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MTARPHKVDGRVVEPKRAVSRE 93
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/190 (38%), Positives = 116/190 (61%), Gaps = 22/190 (11%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D S ++
Sbjct: 71 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVE 130
Query: 62 RVL-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT 120
+VL Q +H LDGR ++ K+AM+ ++ KKIFVGGL P
Sbjct: 131 KVLDQKEHRLDGRVIDPKKAMAMKKDP---------------------VKKIFVGGLNPE 169
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
TE+ R+YF +G + + + D + RGF FI+F ED V +VL+K FH ++G +
Sbjct: 170 ATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKC 229
Query: 181 EVKRALPKDA 190
E+K A PK+
Sbjct: 230 EIKVAQPKEV 239
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 188 LSRQEMQEVQSSRS----GRGGNF 207
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 187
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 188 LSRQEMQEVQSSRS----GRGGNF 207
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 112/183 (61%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H++DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 70 RPHTIDGRVVEPKRAVAREE--------------SAKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + + I+ D+ + + RGF F++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK 188
L K
Sbjct: 176 LSK 178
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 62/116 (53%), Gaps = 23/116 (19%)
Query: 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140
M RE++QF +K+F+GGL TE+ R Y+E +G +TD V
Sbjct: 1 MEREKEQF---------------------RKLFIGGLSFETTEESLRNYYEQWGTLTDCV 39
Query: 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD--ANPGG 194
+M D ++R RGFGF++F + VD + H ++G+ VE KRA+ ++ A PG
Sbjct: 40 VMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGA 95
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD D+VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET++E LR +F Q+G + VVMR+ T R RGFGFV +A +D +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 74
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ Q G + KKIFVGG+ E
Sbjct: 75 RPHKVDGRVVEPKRAVSREDSQ--------------RPGAHLTVKKIFVGGIKEDTEEHH 120
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + IM D+ + + RGF F++FD ++VD+++ + +H +NG EV++A
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHTVNGHNCEVRKA 180
Query: 186 LPK 188
L K
Sbjct: 181 LSK 183
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 55/82 (67%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T++ R +FE +G +TD V+M D NT+R RGFGF+++ T + VD
Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAA 71
Query: 168 LQKTFHDLNGKQVEVKRALPKD 189
+ H ++G+ VE KRA+ ++
Sbjct: 72 MNARPHKVDGRVVEPKRAVSRE 93
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 119/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD++ + +H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTINGHNAEVRKA 187
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 188 LSRQEMQEVQSSRS----GRGGNF 207
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 119/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 82 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 127
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + I+ D+ + + RGFGF++FD D VD+++ + H +NG EV++A
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHTINGHNAEVRKA 187
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 188 LSRQEMQEVQSSRS----GRGGNF 207
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+K+F+GGL TE+ R Y+E +G +TD V+M D ++R RGFGF++F + VD +
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 170 KTFHDLNGKQVEVKRALPKD 189
H ++G+ VE KRA+ ++
Sbjct: 81 ARPHSIDGRVVEPKRAVARE 100
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 151 bits (382), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 119/204 (58%), Gaps = 20/204 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S++T+EE LR Y+ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ HS+DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 70 RPHSIDGRVVEPKRAVAREE--------------SGKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF YG + + I+ D+ + + RGFGF++FD D VD+++ + +H +NG EV++A
Sbjct: 116 LRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK-DANPGGGSRSMGGGGGGGGF 208
L + + SRS G GG F
Sbjct: 176 LSRQEMQEVQSSRS----GRGGNF 195
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 21/109 (19%)
Query: 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140
M RE++QF +K+F+GGL TE+ R Y+E +G +TD V
Sbjct: 1 MEREKEQF---------------------RKLFIGGLSFQTTEESLRNYYEQWGKLTDCV 39
Query: 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189
+M D ++R RGFGF++F + VD + H ++G+ VE KRA+ ++
Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVARE 88
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+EE LR ++ Q+G + VVMR+ + R RGFGFV F+ + +D +
Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H++DGR VE KRA++REE S G + KK+FVGG+ E
Sbjct: 70 RPHTIDGRVVEPKRAVAREE--------------SAKPGAHVTVKKLFVGGIKEDTEEHH 115
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YFE YG + I+ D+ + + RGFGF++F+ D VD+++ + +H +NG EV++A
Sbjct: 116 LREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKA 175
Query: 186 LPK 188
L K
Sbjct: 176 LSK 178
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 23/116 (19%)
Query: 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140
M RE++QF +K+F+GGL TE+ R ++E +G +TD V
Sbjct: 1 MEREKEQF---------------------RKLFIGGLSFETTEESLRNFYEQWGQLTDCV 39
Query: 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD--ANPGG 194
+M D ++R RGFGF++F + VD + H ++G+ VE KRA+ ++ A PG
Sbjct: 40 VMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGA 95
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 117/191 (61%), Gaps = 23/191 (12%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+ D GK+F+GG+SW+TS++ L++YF+++G+V+ + + TGR RGFGF++F D + ++
Sbjct: 65 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 124
Query: 62 RVL-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGL-PP 119
+VL Q +H LDGR ++ K+AM+ ++ KKIFVGGL P
Sbjct: 125 KVLDQKEHRLDGRVIDPKKAMAMKKDP---------------------VKKIFVGGLNPE 163
Query: 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179
+ TE+ R+YF +G + + + D + RGF FI+F E+ V +VL+K FH ++G +
Sbjct: 164 SPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSK 223
Query: 180 VEVKRALPKDA 190
E+K A PK+
Sbjct: 224 CEIKVAQPKEV 234
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 24/190 (12%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+FVGGL ++ + YF +G V D I D NT R RGFGFI F +V++VL +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 171 TFHDLNGKQVEVKRALPKDANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFEGRMES 230
H L+G+ ++ K+A+ +P G + Y G A E
Sbjct: 130 KEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIE----- 184
Query: 231 NRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNA--GYGGPAGT-- 286
P +P G+ + V + + G+ P
Sbjct: 185 ----LPMDPKLN----KRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQ 236
Query: 287 -------PYG 289
G
Sbjct: 237 QQQYGSGGRG 246
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ S G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED--------------SVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 168 LQKTFHDLNGKQVEVKRALPK-DANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFE- 225
+ H ++G+ VE KRA+ + D+ G ++ GG + Y FE
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR----DYFEK 148
Query: 226 -GRMESNRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNA 278
G++E+ M+ + G G+ + + + + Y + G N
Sbjct: 149 YGKIETIEVMEDRQSGK------KRGFAFVTFDDHDTVDKIVVQKYHTINGHNC 196
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ S G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED--------------SVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 168 LQKTFHDLNGKQVEVKRALPK-DANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFE- 225
+ H ++G+ VE KRA+ + D+ G ++ GG + Y FE
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR----DYFEK 148
Query: 226 -GRMESNRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNA 278
G++E+ M+ + G G+ + + + + Y + G N
Sbjct: 149 YGKIETIEVMEDRQSGK------KRGFAFVTFDDHDTVDKIVVQKYHTINGHNC 196
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 110/183 (60%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F ++G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ S G + KKIFVGG+ E
Sbjct: 96 RPHKVDGRVVEPKRAVSRED--------------SVKPGAHLTVKKIFVGGIKEDTEEYN 141
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +NG EVK+A
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKA 201
Query: 186 LPK 188
L K
Sbjct: 202 LSK 204
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD
Sbjct: 33 QLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA 92
Query: 168 LQKTFHDLNGKQVEVKRALPK-DANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFE- 225
+ H ++G+ VE KRA+ + D+ G ++ GG + Y FE
Sbjct: 93 MCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLR----DYFEK 148
Query: 226 -GRMESNRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNA 278
G++E+ M+ + G G+ + + + + Y + G N
Sbjct: 149 YGKIETIEVMEDRQSGK------KRGFAFVTFDDHDTVDKIVVQKYHTINGHNC 196
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 108/183 (59%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+ + T++E L+++F Q+G+++ VVM++ T R RGFGF+ ++ ++D
Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+ R T GR G KK+FVGG+ + E+
Sbjct: 78 RPHKVDGRVVEPKRAVPR-----------TEIGRPEAGATV---KKLFVGGIKEEMEEND 123
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF+ YG V I+ D+ T++ RGF F+ FD D VD++ H + GK ++VK+A
Sbjct: 124 LRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKA 183
Query: 186 LPK 188
LPK
Sbjct: 184 LPK 186
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 95 TNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFG 154
N R N G +K+F+GGL T++ +Q+FE +G + DVV+M D T+R RGFG
Sbjct: 2 VNMDRENDHGEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFG 61
Query: 155 FISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188
FI++ VD H ++G+ VE KRA+P+
Sbjct: 62 FITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPR 95
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=2
SV=1
Length = 471
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 111/181 (61%), Gaps = 15/181 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG++ T+EE L+ ++ Q+G V+ VVMR+ T R RGFGF+ + ++DR ++
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DG+TVEAKRA+ R E++ S TN I KK+FVGGL E+
Sbjct: 93 RPHIIDGKTVEAKRALPRPERE----SRETN----------ISVKKLFVGGLKDNHDEEC 138
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R+YF +G+V V ++ D+ T + RGF F+ FD DAVD+ + K H + V+VK++
Sbjct: 139 LREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILKKQHAIKYVHVDVKKS 198
Query: 186 L 186
+
Sbjct: 199 I 199
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+K+F+GGL P TE+ + ++ +G V DVV+M D T+R RGFGFI++ VDR
Sbjct: 30 HLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRA 89
Query: 168 LQKTFHDLNGKQVEVKRALPK 188
+ H ++GK VE KRALP+
Sbjct: 90 QENRPHIIDGKTVEAKRALPR 110
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 110/188 (58%), Gaps = 21/188 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D+GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D +D+V
Sbjct: 24 DEGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 83
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L+ K H LDG+ ++ KRA + + G KK+FVGGL P T
Sbjct: 84 LETKEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPETT 123
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ +QYF +G + ++ + D T RGF F+++ E+ V ++L+ FH + + E+
Sbjct: 124 EEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEI 183
Query: 183 KRALPKDA 190
K A PK+
Sbjct: 184 KVAQPKEV 191
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 122/185 (65%), Gaps = 17/185 (9%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+F+GG++ T+++ +RE++SQ+G++ +VMR+ TT R RGFGFV F+ + +D ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DG+TV+ KRA+ R+++ N SN + TK+++V G+ TED
Sbjct: 84 RPHIIDGKTVDPKRAVPRDDK---------NRSESN-----VSTKRLYVSGVREDHTEDM 129
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDR-VLQKTFHDLNGKQVEVKR 184
+YF YG VT I+ D+ TQ+PRGFGF++FD D+VD+ VLQK+ H +NG + +V++
Sbjct: 130 LTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKS-HMVNGHRCDVRK 188
Query: 185 ALPKD 189
L KD
Sbjct: 189 GLSKD 193
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 56/80 (70%)
Query: 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169
+KIFVGGL T+D R+++ +G +TD+++M D T+R RGFGF++F + VD ++
Sbjct: 23 RKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Query: 170 KTFHDLNGKQVEVKRALPKD 189
+ H ++GK V+ KRA+P+D
Sbjct: 83 QRPHIIDGKTVDPKRAVPRD 102
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 145 bits (366), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 15/183 (8%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+ + T++E L+ +F ++G+++ VVM++ T R RGFGF+ ++ S++D +
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+ R++ S G T+ KK+FVG L E
Sbjct: 92 RPHKIDGRVVEPKRAVPRQDID------------SPNAGATV--KKLFVGALKDDHDEQS 137
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YF+ +G++ D+ I+ D+ T + RGF F+ FD D VD+V+ + H LNGK V+VK+A
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKA 197
Query: 186 LPK 188
LPK
Sbjct: 198 LPK 200
Score = 68.6 bits (166), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168
+K+F+GGL T++ + +FE +G++ DVV+M D T+R RGFGFI++ +D
Sbjct: 30 MRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQ 89
Query: 169 QKTFHDLNGKQVEVKRALPK 188
+ H ++G+ VE KRA+P+
Sbjct: 90 KSRPHKIDGRVVEPKRAVPR 109
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 111/188 (59%), Gaps = 21/188 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D+GK+FIGG+SW+TS++ L EY S++G+VL + + TGR RGFGFV+F D +D+V
Sbjct: 24 DEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKV 83
Query: 64 LQ-DKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L+ ++H LDG+ ++ KRA + + G KK+FVGGL P T
Sbjct: 84 LETNEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPETT 123
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ +QYF +G + ++ + D T RGF F+++ E+ V ++L+ FH + + E+
Sbjct: 124 EEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEI 183
Query: 183 KRALPKDA 190
K A PK+
Sbjct: 184 KAAQPKEV 191
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 68/196 (34%), Gaps = 36/196 (18%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL ++ +Y +G V D I D T R RGFGF+ F +VD+VL+
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 171 TFHDLNGKQVEVKRAL-------PKDANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASA 223
H L+GK ++ KRA PK GG S FGG+ G
Sbjct: 87 NEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGF-------GEIEN 139
Query: 224 FEGRMESNRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNAGYGGP 283
E +++ N GF +G + +G G
Sbjct: 140 IELPIDTKT-----NERRGFCFVTYTGEEPVKKLLESRFHQIGTGKCEIKAAQ------- 187
Query: 284 AGTPYGNPNVPNTGYA 299
P Y
Sbjct: 188 ----------PKEVYR 193
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 21/188 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L+ K H LDG+ ++ KRA + + G KK+FVGGL P +
Sbjct: 206 LELKEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPDTS 245
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+ +H + + E+
Sbjct: 246 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEI 305
Query: 183 KRALPKDA 190
K A PK+
Sbjct: 306 KVAQPKEV 313
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 111/188 (59%), Gaps = 21/188 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +++V
Sbjct: 28 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKV 87
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L+ K H LDG+ ++ KRA + + G KK+FVGGL P +
Sbjct: 88 LELKEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPDTS 127
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+ +H + + E+
Sbjct: 128 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEI 187
Query: 183 KRALPKDA 190
K A PK+
Sbjct: 188 KVAQPKEV 195
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 142 bits (357), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 111/188 (59%), Gaps = 21/188 (11%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D GK+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+V
Sbjct: 27 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 86
Query: 64 LQDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
L+ K H LDG+ ++ KRA + + G KK+FVGGL P +
Sbjct: 87 LELKEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPDTS 126
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ ++YF A+G + ++ + D T RGF FI++ E+ V ++L+ +H + + E+
Sbjct: 127 EEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEI 186
Query: 183 KRALPKDA 190
K A PK+
Sbjct: 187 KVAQPKEV 194
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 140 bits (353), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 21/185 (11%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
K+FIGG+SW+TS++ L EY S++G+V+ + + TGR RGFGFV+F D + +D+VL+
Sbjct: 52 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 111
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
K H LDG+ ++ KRA + + G KK+FVGGL P +E+
Sbjct: 112 KEHKLDGKLIDPKRAKALK--------------------GKEPPKKVFVGGLSPDTSEEQ 151
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
++YF A+G + ++ + D T RGF FI++ E+ V ++L+ +H + + E+K A
Sbjct: 152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 211
Query: 186 LPKDA 190
PK+
Sbjct: 212 QPKEV 216
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 119/241 (49%), Gaps = 53/241 (21%)
Query: 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66
KLFIGG+S+ET+++ LRE+F Q+G + VVMR+ T R RGFGFV ++ +D +
Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87
Query: 67 K-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125
+ H +DGR VE KRA+SRE+ SAR G + KKIFVGG+ E
Sbjct: 88 RPHKVDGRVVEPKRAVSRED---SARPG-----------AHLTVKKIFVGGIKEDTEEYH 133
Query: 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185
R YFE YG + + +M D+ + + RGF F++FD D VD+++ + +H +N EVK+A
Sbjct: 134 LRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNCEVKKA 193
Query: 186 LPK-DANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFEGRMESNRYMQPQNPGSGFT 244
L K + R GGGG S F
Sbjct: 194 LSKQEMQTASAQRGRGGGG-------------------------------------SNFM 216
Query: 245 P 245
Sbjct: 217 G 217
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167
+ +K+F+GGL T+D R++FE +G +TD V+M D T+R RGFGF+++ + VD
Sbjct: 25 QLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS 84
Query: 168 LQKTFHDLNGKQVEVKRALPKD--ANPGG 194
+ H ++G+ VE KRA+ ++ A PG
Sbjct: 85 MSARPHKVDGRVVEPKRAVSREDSARPGA 113
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 21/187 (11%)
Query: 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL 64
+ K+FIGG+SW+TS++ L EY S++G+VL + + TGR RGFGFV+F D +D+VL
Sbjct: 33 RSKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVL 92
Query: 65 QDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTE 123
+ K H LDG+ ++ KRA + + G KK+FVGGL P TE
Sbjct: 93 ETKEHKLDGKLIDPKRAKALQ--------------------GKEPPKKVFVGGLSPETTE 132
Query: 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183
+ +QYF +G + ++ + D T RGF F+++ E+ V ++L+ FH + + E+K
Sbjct: 133 EQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIK 192
Query: 184 RALPKDA 190
A PK+
Sbjct: 193 AAQPKEV 199
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 135 bits (341), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 50/287 (17%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
++ K+FIGG+SW+T+++ L++YFS++GDV+ + + TGR RGFGFV+F + +D+V
Sbjct: 93 EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 152
Query: 64 L-QDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
+ Q +H L+G+ ++ KRA + + ++ KKIFVGGL P
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKE--------------------PVKKIFVGGLSPDTP 192
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
E+ R+YF +G V + + D T + RGF FI+F E+ V ++++K +H++ + E+
Sbjct: 193 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEI 252
Query: 183 KRALPKDANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFEGRMESNRYMQPQNPGSG 242
K A+ K+ G+ F GR QN G
Sbjct: 253 KVAMSKEQYQQQ---------------------QQWGSRGGFAGRARGRGGGPSQNWNQG 291
Query: 243 FTPYGSSGYGASGYGYGPSSNSV--------GYGGYGSYGGTNAGYG 281
++ Y + GYG+ GY Y GYG Y +GYG
Sbjct: 292 YSNYWNQGYGSYGYNSQGYGGYGGYDYTGYNSYYGYGDYSNQQSGYG 338
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 108/189 (57%), Gaps = 26/189 (13%)
Query: 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63
D KLF+GG+SWET+E+ LR++F +YG++ V + TGR RGF F+VF + +D+V
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKV 113
Query: 64 -LQDKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122
D+H ++ + V+ K+A AR G KIFVGGL ++
Sbjct: 114 SAADEHIINSKKVDPKKA--------KARHG-----------------KIFVGGLTTEIS 148
Query: 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182
++ + YF +G++ +V + +D+ + +GF FI+FD+E V +L+ + GK+V+V
Sbjct: 149 DEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDV 208
Query: 183 KRALPKDAN 191
KRA PK N
Sbjct: 209 KRATPKPEN 217
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 106/189 (56%), Gaps = 15/189 (7%)
Query: 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILD 61
+S KLFIGG++ +TSE LR +F +G + VV+ T R R FGFV +++ D
Sbjct: 3 NSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEAD 62
Query: 62 RVLQDK-HSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT 120
+ H++DG TVE KRA+SRE+ SAR G + KK+FVGGL
Sbjct: 63 AAMAASPHAVDGNTVELKRAVSRED---SARPG-----------AHAKVKKLFVGGLKGD 108
Query: 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180
+ E ++F +G V I+ D+ + + RGFGF+ F + DA D+ FH + G +V
Sbjct: 109 VAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRV 168
Query: 181 EVKRALPKD 189
EVK+A+PK+
Sbjct: 169 EVKKAVPKE 177
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170
K+F+GGL +E G R +FEA+G +TD V++ + T+R R FGF+++ + D +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 171 TFHDLNGKQVEVKRALPKD--ANPGGGSRSMGGGGGGGGFGGYQGYGASGGNASAFE--G 226
+ H ++G VE+KRA+ ++ A PG ++ GG +G A G F G
Sbjct: 68 SPHAVDGNTVELKRAVSREDSARPGAHAKV-----KKLFVGGLKGDVAEGDLIEHFSQFG 122
Query: 227 RMESNRYMQPQNPGSGFTPYGSSGYGASGYGYGPSSNSVGYGGYGSYGGTNAGYGGPAGT 286
+E + + G G+G + +++ + G
Sbjct: 123 AVEKAEIIADKQSGK------KRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEV------ 170
Query: 287 PYGNPNVPNTGY 298
VP
Sbjct: 171 ---KKAVPKEDI 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 234,776,185
Number of Sequences: 539616
Number of extensions: 13888836
Number of successful extensions: 176296
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1719
Number of HSP's successfully gapped in prelim test: 1952
Number of HSP's that attempted gapping in prelim test: 49838
Number of HSP's gapped (non-prelim): 37757
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)