Query 035855
Match_columns 456
No_of_seqs 414 out of 2233
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 07:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.2E-35 2.6E-40 301.0 25.2 169 3-191 105-278 (346)
2 KOG0117 Heterogeneous nuclear 100.0 1.4E-30 3E-35 259.6 28.3 182 5-194 83-337 (506)
3 KOG4205 RNA-binding protein mu 100.0 2E-31 4.3E-36 263.6 14.8 177 4-194 5-182 (311)
4 TIGR01645 half-pint poly-U bin 100.0 2.4E-30 5.2E-35 275.9 20.7 179 4-191 106-287 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-29 7.1E-34 255.0 23.0 187 4-190 88-351 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.1E-29 6.6E-34 255.2 21.3 166 4-189 2-172 (352)
7 TIGR01622 SF-CC1 splicing fact 100.0 5.2E-29 1.1E-33 262.5 22.7 177 3-187 87-265 (457)
8 KOG0144 RNA-binding protein CU 100.0 5.6E-30 1.2E-34 254.1 13.4 171 2-192 31-210 (510)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 5.5E-28 1.2E-32 257.3 26.9 166 3-191 136-310 (578)
10 KOG0148 Apoptosis-promoting RN 100.0 2.9E-28 6.2E-33 229.8 14.9 176 5-190 62-240 (321)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.2E-27 6.9E-32 255.4 19.7 184 4-191 177-367 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 3.3E-27 7.2E-32 255.2 19.7 164 7-189 2-168 (562)
13 TIGR01648 hnRNP-R-Q heterogene 99.9 1.6E-26 3.5E-31 246.1 18.7 159 4-189 57-223 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.9E-26 1.3E-30 242.3 21.0 181 2-188 172-375 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.6E-25 1E-29 234.2 21.6 179 3-188 273-480 (481)
16 KOG0127 Nucleolar protein fibr 99.9 1.7E-25 3.7E-30 227.6 16.2 189 1-190 1-198 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8E-25 1.7E-29 232.3 20.8 167 5-189 2-175 (481)
18 KOG0127 Nucleolar protein fibr 99.9 6.2E-25 1.3E-29 223.6 17.7 184 5-189 117-379 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-24 3.9E-29 230.9 20.7 184 4-187 294-501 (509)
20 KOG0131 Splicing factor 3b, su 99.9 3.6E-25 7.7E-30 198.3 11.8 169 4-191 8-180 (203)
21 KOG0145 RNA-binding protein EL 99.9 1.9E-24 4.1E-29 202.8 14.6 169 2-190 38-211 (360)
22 KOG0109 RNA-binding protein LA 99.9 7.3E-25 1.6E-29 208.6 10.3 148 6-191 3-153 (346)
23 TIGR01622 SF-CC1 splicing fact 99.9 3.7E-22 8E-27 210.4 21.1 179 5-187 186-447 (457)
24 KOG0145 RNA-binding protein EL 99.9 1.3E-22 2.8E-27 190.5 15.3 186 4-189 126-359 (360)
25 KOG0146 RNA-binding protein ET 99.9 2.5E-22 5.5E-27 189.2 12.4 188 4-192 18-369 (371)
26 KOG0124 Polypyrimidine tract-b 99.9 1.7E-22 3.7E-27 197.1 9.3 174 6-189 114-291 (544)
27 KOG0123 Polyadenylate-binding 99.9 1.2E-20 2.5E-25 192.9 16.5 152 6-191 2-156 (369)
28 KOG0110 RNA-binding protein (R 99.8 3.1E-21 6.7E-26 202.4 12.1 174 4-188 514-693 (725)
29 KOG0148 Apoptosis-promoting RN 99.8 4.5E-21 9.8E-26 181.3 9.5 139 3-189 4-143 (321)
30 KOG0144 RNA-binding protein CU 99.8 2.4E-20 5.2E-25 185.9 10.9 186 4-190 123-506 (510)
31 PLN03134 glycine-rich RNA-bind 99.8 2.2E-19 4.7E-24 160.8 15.0 87 107-193 32-119 (144)
32 KOG4211 Splicing factor hnRNP- 99.8 1.6E-19 3.5E-24 183.1 15.4 171 4-187 9-181 (510)
33 KOG0147 Transcriptional coacti 99.8 1.3E-20 2.8E-25 193.1 7.6 181 2-188 176-358 (549)
34 KOG0105 Alternative splicing f 99.8 4.2E-18 9.2E-23 153.2 18.4 160 3-172 4-171 (241)
35 KOG0123 Polyadenylate-binding 99.8 9E-19 2E-23 179.0 15.6 170 3-188 74-246 (369)
36 TIGR01645 half-pint poly-U bin 99.8 1.6E-17 3.5E-22 177.8 20.3 78 5-82 204-283 (612)
37 KOG4206 Spliceosomal protein s 99.7 4.8E-16 1E-20 144.7 16.8 174 5-186 9-220 (221)
38 KOG4212 RNA-binding protein hn 99.7 4.4E-16 9.6E-21 155.6 17.5 185 3-189 42-295 (608)
39 PLN03134 glycine-rich RNA-bind 99.7 1.1E-16 2.3E-21 143.4 10.5 81 3-83 32-114 (144)
40 KOG0106 Alternative splicing f 99.7 4.7E-17 1E-21 152.6 7.1 164 6-186 2-169 (216)
41 KOG0149 Predicted RNA-binding 99.7 8.9E-17 1.9E-21 150.0 7.6 80 3-82 10-90 (247)
42 KOG0113 U1 small nuclear ribon 99.6 2.1E-15 4.6E-20 144.8 13.1 96 103-198 95-191 (335)
43 KOG0110 RNA-binding protein (R 99.6 4.6E-15 1E-19 156.4 14.1 181 2-188 382-598 (725)
44 COG0724 RNA-binding proteins ( 99.6 4.6E-15 1E-19 142.1 12.6 146 5-150 115-266 (306)
45 KOG0149 Predicted RNA-binding 99.6 1.5E-15 3.2E-20 141.9 8.4 81 107-187 10-90 (247)
46 KOG0129 Predicted RNA-binding 99.6 1.2E-14 2.7E-19 148.7 15.5 173 3-186 257-452 (520)
47 TIGR01659 sex-lethal sex-letha 99.6 3.5E-15 7.7E-20 151.7 11.3 83 106-188 104-187 (346)
48 KOG0122 Translation initiation 99.6 8.8E-15 1.9E-19 137.2 12.3 83 107-189 187-270 (270)
49 KOG0147 Transcriptional coacti 99.6 1.1E-14 2.3E-19 150.0 12.2 175 7-186 280-526 (549)
50 KOG1548 Transcription elongati 99.6 1.9E-13 4.2E-18 133.8 18.1 177 5-186 134-350 (382)
51 KOG4211 Splicing factor hnRNP- 99.6 4.1E-13 8.9E-18 136.8 20.7 181 4-186 102-356 (510)
52 PF00076 RRM_1: RNA recognitio 99.5 5.1E-14 1.1E-18 108.9 8.7 69 112-181 1-70 (70)
53 PF00076 RRM_1: RNA recognitio 99.5 8.8E-14 1.9E-18 107.5 8.3 68 8-76 1-70 (70)
54 KOG0121 Nuclear cap-binding pr 99.5 5.2E-14 1.1E-18 120.0 7.3 81 3-83 34-116 (153)
55 KOG1190 Polypyrimidine tract-b 99.5 6.4E-13 1.4E-17 132.4 16.0 174 5-187 297-490 (492)
56 KOG1365 RNA-binding protein Fu 99.5 8.7E-14 1.9E-18 137.4 9.1 183 5-189 161-363 (508)
57 KOG0120 Splicing factor U2AF, 99.5 1.3E-13 2.9E-18 143.5 10.7 182 4-185 288-489 (500)
58 KOG0121 Nuclear cap-binding pr 99.5 7.6E-14 1.6E-18 119.0 7.2 80 108-187 35-115 (153)
59 PLN03120 nucleic acid binding 99.5 2.4E-13 5.2E-18 130.9 11.6 77 108-187 3-79 (260)
60 PF14259 RRM_6: RNA recognitio 99.5 1.7E-13 3.7E-18 106.8 8.0 69 112-181 1-70 (70)
61 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3E-18 133.9 9.0 83 104-188 91-174 (376)
62 KOG4207 Predicted splicing fac 99.5 1.6E-13 3.4E-18 125.9 8.8 81 107-187 11-92 (256)
63 KOG0122 Translation initiation 99.4 2.4E-13 5.2E-18 127.6 9.0 81 3-83 187-269 (270)
64 PF14259 RRM_6: RNA recognitio 99.4 2.7E-13 6E-18 105.6 7.8 68 8-76 1-70 (70)
65 KOG1457 RNA binding protein (c 99.4 1.3E-12 2.9E-17 121.1 13.2 161 5-169 34-266 (284)
66 KOG0107 Alternative splicing f 99.4 6.9E-13 1.5E-17 118.9 10.4 78 108-190 9-87 (195)
67 KOG0130 RNA-binding protein RB 99.4 7.1E-13 1.5E-17 114.0 9.3 88 104-191 67-155 (170)
68 KOG0124 Polypyrimidine tract-b 99.4 1.8E-12 3.8E-17 127.5 13.1 179 6-184 211-531 (544)
69 PLN03120 nucleic acid binding 99.4 8.8E-13 1.9E-17 127.1 10.6 77 4-83 3-80 (260)
70 KOG0105 Alternative splicing f 99.4 1.1E-12 2.5E-17 118.3 9.6 78 108-188 5-83 (241)
71 KOG0117 Heterogeneous nuclear 99.4 1.1E-12 2.4E-17 132.0 10.3 80 107-186 81-162 (506)
72 COG0724 RNA-binding proteins ( 99.4 1.2E-12 2.6E-17 125.4 10.0 79 109-187 115-194 (306)
73 KOG0113 U1 small nuclear ribon 99.4 1.2E-12 2.6E-17 126.0 9.3 83 3-85 99-183 (335)
74 KOG0107 Alternative splicing f 99.4 1.2E-12 2.6E-17 117.4 7.8 75 4-83 9-85 (195)
75 PLN03121 nucleic acid binding 99.4 2.9E-12 6.4E-17 121.7 10.7 76 108-186 4-79 (243)
76 PLN03121 nucleic acid binding 99.3 4.1E-12 8.8E-17 120.8 10.4 79 1-82 1-80 (243)
77 KOG0108 mRNA cleavage and poly 99.3 1.1E-12 2.3E-17 135.9 7.0 80 6-85 19-100 (435)
78 smart00362 RRM_2 RNA recogniti 99.3 5.2E-12 1.1E-16 96.5 9.2 71 111-183 1-72 (72)
79 smart00360 RRM RNA recognition 99.3 5.4E-12 1.2E-16 96.0 8.9 70 114-183 1-71 (71)
80 PLN03213 repressor of silencin 99.3 4.3E-12 9.3E-17 128.9 9.7 77 107-187 8-87 (759)
81 smart00362 RRM_2 RNA recogniti 99.3 8.7E-12 1.9E-16 95.3 8.6 69 7-77 1-71 (72)
82 KOG1190 Polypyrimidine tract-b 99.3 1.2E-11 2.6E-16 123.5 11.5 174 3-186 26-226 (492)
83 KOG0111 Cyclophilin-type pepti 99.3 1.8E-12 3.8E-17 119.9 4.7 84 107-190 8-92 (298)
84 KOG0120 Splicing factor U2AF, 99.3 4.3E-12 9.4E-17 132.2 8.1 181 3-189 173-370 (500)
85 PLN03213 repressor of silencin 99.3 2.3E-11 5E-16 123.7 12.4 77 4-84 9-89 (759)
86 cd00590 RRM RRM (RNA recogniti 99.3 2.8E-11 6E-16 92.9 9.9 73 111-184 1-74 (74)
87 KOG4205 RNA-binding protein mu 99.3 2.4E-12 5.2E-17 128.1 4.8 87 108-194 5-91 (311)
88 smart00360 RRM RNA recognition 99.3 1.8E-11 3.8E-16 93.1 8.4 68 10-77 1-70 (71)
89 KOG0125 Ataxin 2-binding prote 99.3 8.5E-12 1.8E-16 121.5 7.1 78 4-83 95-174 (376)
90 KOG4212 RNA-binding protein hn 99.3 6.3E-11 1.4E-15 119.1 13.0 81 108-189 43-125 (608)
91 KOG0114 Predicted RNA-binding 99.2 6.4E-11 1.4E-15 97.7 10.0 80 106-188 15-95 (124)
92 KOG0131 Splicing factor 3b, su 99.2 2E-11 4.4E-16 110.2 7.0 80 108-187 8-88 (203)
93 KOG0126 Predicted RNA-binding 99.2 1.4E-12 3.1E-17 117.5 -0.4 78 3-80 33-112 (219)
94 KOG4207 Predicted splicing fac 99.2 1.3E-11 2.8E-16 113.4 5.8 77 5-81 13-91 (256)
95 cd00590 RRM RRM (RNA recogniti 99.2 1E-10 2.2E-15 89.7 9.5 71 7-78 1-73 (74)
96 KOG4210 Nuclear localization s 99.2 1.4E-11 3E-16 122.0 5.7 181 4-193 87-269 (285)
97 KOG0116 RasGAP SH3 binding pro 99.2 1.8E-10 3.9E-15 118.8 13.0 82 110-191 289-370 (419)
98 KOG0114 Predicted RNA-binding 99.2 1.8E-10 3.8E-15 95.1 9.9 80 4-86 17-98 (124)
99 KOG0126 Predicted RNA-binding 99.2 3.9E-12 8.4E-17 114.7 -0.1 78 108-185 34-112 (219)
100 KOG0415 Predicted peptidyl pro 99.2 4.8E-11 1E-15 117.2 7.4 82 105-186 235-317 (479)
101 KOG0111 Cyclophilin-type pepti 99.2 1.9E-11 4.2E-16 113.1 4.3 86 1-86 6-93 (298)
102 KOG0108 mRNA cleavage and poly 99.2 6.5E-11 1.4E-15 122.7 8.4 81 110-190 19-100 (435)
103 KOG0109 RNA-binding protein LA 99.1 4.4E-11 9.6E-16 114.9 6.0 71 110-188 3-74 (346)
104 KOG1456 Heterogeneous nuclear 99.1 6E-10 1.3E-14 110.3 12.9 161 5-189 31-200 (494)
105 KOG1456 Heterogeneous nuclear 99.1 2.5E-09 5.4E-14 105.9 17.0 178 4-188 286-491 (494)
106 KOG1365 RNA-binding protein Fu 99.1 2.3E-10 5E-15 113.5 9.4 179 3-186 58-241 (508)
107 smart00361 RRM_1 RNA recogniti 99.1 3.1E-10 6.7E-15 88.9 8.1 60 123-182 2-69 (70)
108 KOG4454 RNA binding protein (R 99.1 2.9E-11 6.3E-16 112.0 0.5 132 3-170 7-144 (267)
109 KOG0130 RNA-binding protein RB 99.1 2.6E-10 5.7E-15 98.3 6.2 78 7-84 74-153 (170)
110 KOG0128 RNA-binding protein SA 99.0 1.1E-11 2.4E-16 133.3 -3.3 151 4-191 666-818 (881)
111 PF13893 RRM_5: RNA recognitio 99.0 1.2E-09 2.5E-14 81.6 7.2 55 126-185 1-56 (56)
112 KOG0226 RNA-binding proteins [ 98.9 4.5E-10 9.7E-15 106.3 3.3 170 5-189 96-271 (290)
113 smart00361 RRM_1 RNA recogniti 98.9 3.7E-09 8.1E-14 82.8 7.5 59 19-77 2-69 (70)
114 KOG0132 RNA polymerase II C-te 98.9 2.9E-09 6.2E-14 113.8 8.4 82 104-191 416-498 (894)
115 KOG0132 RNA polymerase II C-te 98.9 2.5E-09 5.4E-14 114.3 7.2 76 5-86 421-498 (894)
116 KOG0153 Predicted RNA-binding 98.9 6.4E-09 1.4E-13 102.4 9.0 76 107-188 226-303 (377)
117 KOG0415 Predicted peptidyl pro 98.9 4.3E-09 9.3E-14 103.7 7.5 85 1-85 235-321 (479)
118 KOG0146 RNA-binding protein ET 98.8 2.9E-09 6.2E-14 101.4 4.6 81 3-83 283-365 (371)
119 PF13893 RRM_5: RNA recognitio 98.8 1.2E-08 2.7E-13 76.0 7.0 54 22-80 1-56 (56)
120 KOG4206 Spliceosomal protein s 98.8 2.1E-08 4.6E-13 94.0 8.5 80 108-190 8-92 (221)
121 KOG4208 Nucleolar RNA-binding 98.8 2.3E-08 5E-13 92.4 8.4 82 107-188 47-130 (214)
122 KOG0533 RRM motif-containing p 98.7 1.1E-07 2.4E-12 91.5 11.7 80 3-83 81-162 (243)
123 KOG0153 Predicted RNA-binding 98.7 2.8E-08 6.2E-13 97.9 7.3 74 3-82 226-302 (377)
124 KOG0533 RRM motif-containing p 98.7 7.2E-08 1.6E-12 92.9 9.0 83 106-189 80-163 (243)
125 KOG4209 Splicing factor RNPS1, 98.7 2.5E-08 5.5E-13 95.9 5.6 83 106-188 98-180 (231)
126 KOG4208 Nucleolar RNA-binding 98.7 1.2E-07 2.6E-12 87.7 9.4 80 4-83 48-130 (214)
127 KOG4307 RNA binding protein RB 98.6 4.1E-08 9E-13 103.8 7.0 184 1-185 307-511 (944)
128 KOG0112 Large RNA-binding prot 98.6 1.6E-08 3.4E-13 109.9 3.9 158 3-189 370-532 (975)
129 KOG0116 RasGAP SH3 binding pro 98.6 6.7E-08 1.4E-12 100.0 7.5 76 5-80 288-364 (419)
130 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.7E-07 3.7E-12 97.2 9.1 81 107-187 403-484 (940)
131 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.1E-07 2.3E-12 98.7 7.4 77 5-81 405-483 (940)
132 KOG4454 RNA binding protein (R 98.5 3.4E-08 7.4E-13 91.9 2.4 77 108-186 8-85 (267)
133 KOG2193 IGF-II mRNA-binding pr 98.5 1.1E-08 2.5E-13 102.7 -1.2 150 6-187 2-156 (584)
134 KOG4660 Protein Mei2, essentia 98.5 8.1E-08 1.7E-12 100.0 4.6 174 2-187 72-249 (549)
135 KOG1548 Transcription elongati 98.5 2.9E-07 6.3E-12 90.9 7.7 79 107-186 132-219 (382)
136 KOG1995 Conserved Zn-finger pr 98.5 4.6E-07 9.9E-12 90.2 9.1 84 106-189 63-155 (351)
137 KOG4676 Splicing factor, argin 98.5 7.7E-08 1.7E-12 96.1 2.8 170 4-177 6-215 (479)
138 KOG0226 RNA-binding proteins [ 98.4 2.1E-07 4.6E-12 88.4 4.7 80 2-81 187-268 (290)
139 KOG4307 RNA binding protein RB 98.4 9.9E-07 2.1E-11 93.7 9.1 75 110-184 868-943 (944)
140 KOG4209 Splicing factor RNPS1, 98.4 4.9E-07 1.1E-11 87.1 5.9 82 2-83 98-180 (231)
141 PF04059 RRM_2: RNA recognitio 98.3 3.9E-06 8.4E-11 69.9 9.6 78 6-83 2-87 (97)
142 KOG1457 RNA binding protein (c 98.3 4.5E-06 9.7E-11 78.2 10.9 85 107-191 32-121 (284)
143 PF04059 RRM_2: RNA recognitio 98.3 6.2E-06 1.3E-10 68.7 9.6 79 110-188 2-87 (97)
144 KOG0106 Alternative splicing f 98.3 1E-06 2.3E-11 83.2 5.2 72 110-189 2-74 (216)
145 KOG4660 Protein Mei2, essentia 98.2 1.4E-06 3.1E-11 90.8 5.6 71 106-181 72-143 (549)
146 KOG0128 RNA-binding protein SA 98.1 1.2E-07 2.6E-12 102.8 -4.2 163 6-178 572-736 (881)
147 KOG0151 Predicted splicing reg 98.0 8.7E-06 1.9E-10 86.9 6.7 80 2-81 171-255 (877)
148 PF08777 RRM_3: RNA binding mo 98.0 8.2E-06 1.8E-10 69.2 4.9 69 110-184 2-76 (105)
149 KOG4849 mRNA cleavage factor I 97.9 2.7E-05 5.8E-10 77.2 6.8 76 107-182 78-156 (498)
150 KOG0151 Predicted splicing reg 97.8 2.3E-05 5.1E-10 83.7 5.8 81 106-186 171-255 (877)
151 KOG1855 Predicted RNA-binding 97.8 4.9E-06 1.1E-10 84.3 0.5 69 106-174 228-309 (484)
152 KOG1995 Conserved Zn-finger pr 97.7 2.8E-05 6.2E-10 77.6 4.2 82 3-84 64-155 (351)
153 PF11608 Limkain-b1: Limkain b 97.6 0.00019 4.2E-09 57.6 6.5 67 110-186 3-75 (90)
154 PF08777 RRM_3: RNA binding mo 97.6 0.00028 6E-09 59.8 7.5 69 6-80 2-77 (105)
155 KOG4849 mRNA cleavage factor I 97.5 0.00011 2.3E-09 73.0 5.2 78 6-83 81-162 (498)
156 PF11608 Limkain-b1: Limkain b 97.5 0.00039 8.5E-09 55.9 6.7 70 5-84 2-78 (90)
157 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.9E-09 52.2 5.3 52 110-168 2-53 (53)
158 COG5175 MOT2 Transcriptional r 97.4 0.00018 3.9E-09 71.1 5.3 81 106-186 111-201 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00044 9.5E-09 51.2 5.3 53 5-64 1-53 (53)
160 KOG0129 Predicted RNA-binding 97.3 0.00062 1.3E-08 71.0 7.9 62 4-65 369-431 (520)
161 KOG2591 c-Mpl binding protein, 97.3 0.00044 9.6E-09 72.4 6.4 72 108-186 174-250 (684)
162 KOG4210 Nuclear localization s 97.2 0.00019 4.1E-09 71.5 2.6 79 6-84 186-265 (285)
163 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0022 4.7E-08 53.8 6.7 78 108-186 5-90 (100)
164 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0037 7.9E-08 52.5 6.5 80 3-83 4-92 (100)
165 PF08952 DUF1866: Domain of un 96.8 0.0042 9E-08 55.3 7.0 73 108-188 26-107 (146)
166 KOG1855 Predicted RNA-binding 96.8 0.0013 2.9E-08 67.1 4.1 65 3-67 229-306 (484)
167 KOG4676 Splicing factor, argin 96.7 0.0017 3.7E-08 65.6 4.4 76 110-185 8-86 (479)
168 KOG0115 RNA-binding protein p5 96.6 0.0051 1.1E-07 59.1 6.4 95 66-188 15-114 (275)
169 KOG0115 RNA-binding protein p5 96.5 0.0048 1.1E-07 59.3 5.9 59 6-65 32-90 (275)
170 KOG2135 Proteins containing th 96.4 0.0016 3.5E-08 67.3 2.2 75 107-187 370-445 (526)
171 KOG3152 TBP-binding protein, a 96.4 0.0035 7.5E-08 60.3 4.2 72 108-179 73-157 (278)
172 KOG0921 Dosage compensation co 96.4 0.031 6.8E-07 62.3 11.7 16 44-59 899-914 (1282)
173 PF08952 DUF1866: Domain of un 96.3 0.014 3.1E-07 52.0 7.2 77 1-85 23-109 (146)
174 COG5175 MOT2 Transcriptional r 96.3 0.01 2.2E-07 59.1 6.7 76 6-81 115-201 (480)
175 KOG2314 Translation initiation 96.2 0.011 2.4E-07 62.4 6.9 75 108-183 57-139 (698)
176 PF10309 DUF2414: Protein of u 96.1 0.028 6E-07 42.9 6.9 54 5-66 5-61 (62)
177 KOG3152 TBP-binding protein, a 96.1 0.0038 8.2E-08 60.0 2.7 69 5-73 74-156 (278)
178 KOG2591 c-Mpl binding protein, 95.8 0.011 2.4E-07 62.2 5.0 69 5-80 175-249 (684)
179 KOG2202 U2 snRNP splicing fact 95.8 0.005 1.1E-07 59.3 2.1 62 124-186 83-146 (260)
180 PF10309 DUF2414: Protein of u 95.8 0.06 1.3E-06 41.1 7.5 56 108-171 4-62 (62)
181 KOG2135 Proteins containing th 95.8 0.0041 9E-08 64.3 1.5 78 1-84 368-447 (526)
182 PF07292 NID: Nmi/IFP 35 domai 95.8 0.0052 1.1E-07 50.2 1.8 68 50-130 1-73 (88)
183 KOG1996 mRNA splicing factor [ 95.6 0.031 6.7E-07 54.8 6.9 62 123-184 300-363 (378)
184 PF08675 RNA_bind: RNA binding 95.6 0.027 5.9E-07 45.4 5.4 57 108-173 8-64 (87)
185 KOG2314 Translation initiation 95.6 0.041 8.9E-07 58.3 7.9 68 4-72 57-132 (698)
186 PF08675 RNA_bind: RNA binding 95.2 0.064 1.4E-06 43.3 6.3 53 8-68 11-63 (87)
187 PF10567 Nab6_mRNP_bdg: RNA-re 95.2 0.29 6.3E-06 48.3 11.9 167 5-172 15-212 (309)
188 KOG2253 U1 snRNP complex, subu 95.2 0.011 2.3E-07 63.7 2.2 117 4-131 39-157 (668)
189 KOG2193 IGF-II mRNA-binding pr 95.0 0.018 3.9E-07 58.9 3.1 76 110-191 2-79 (584)
190 KOG2416 Acinus (induces apopto 94.8 0.033 7.2E-07 59.3 4.7 77 105-187 440-521 (718)
191 KOG2202 U2 snRNP splicing fact 94.7 0.018 3.8E-07 55.6 2.1 53 28-81 92-146 (260)
192 KOG2068 MOT2 transcription fac 94.7 0.014 2.9E-07 58.4 1.3 82 107-188 75-163 (327)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.021 4.5E-07 52.9 2.3 63 3-65 5-73 (176)
194 KOG1996 mRNA splicing factor [ 94.3 0.12 2.6E-06 50.8 6.7 65 18-82 299-366 (378)
195 PF15023 DUF4523: Protein of u 94.2 0.24 5.1E-06 44.0 7.7 74 1-81 82-160 (166)
196 KOG0804 Cytoplasmic Zn-finger 94.0 0.12 2.6E-06 53.6 6.4 61 3-65 72-133 (493)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.041 8.9E-07 51.0 2.3 80 108-187 6-97 (176)
198 PF15023 DUF4523: Protein of u 93.3 0.4 8.6E-06 42.6 7.6 75 105-186 82-160 (166)
199 KOG0112 Large RNA-binding prot 93.1 0.029 6.2E-07 62.3 0.3 78 106-184 369-447 (975)
200 PF03880 DbpA: DbpA RNA bindin 92.7 0.56 1.2E-05 36.9 7.1 58 119-185 11-74 (74)
201 KOG4285 Mitotic phosphoprotein 92.1 0.52 1.1E-05 46.7 7.3 75 109-190 197-272 (350)
202 PRK11634 ATP-dependent RNA hel 91.7 2.3 5E-05 47.2 13.0 69 111-188 488-563 (629)
203 KOG2318 Uncharacterized conser 91.5 0.89 1.9E-05 48.7 8.8 126 2-184 171-302 (650)
204 PF07576 BRAP2: BRCA1-associat 91.5 1.7 3.6E-05 37.2 9.1 67 108-176 12-80 (110)
205 KOG2416 Acinus (induces apopto 91.4 0.18 3.9E-06 53.9 3.6 73 4-82 443-521 (718)
206 KOG2068 MOT2 transcription fac 91.2 0.15 3.2E-06 51.2 2.7 79 6-84 78-164 (327)
207 PF04847 Calcipressin: Calcipr 90.2 0.72 1.6E-05 43.1 6.1 61 121-187 7-70 (184)
208 KOG4285 Mitotic phosphoprotein 89.9 1.9 4.2E-05 42.8 9.0 79 5-90 197-277 (350)
209 PF07530 PRE_C2HC: Associated 89.4 0.64 1.4E-05 36.2 4.3 64 124-189 2-66 (68)
210 PF07576 BRAP2: BRCA1-associat 89.3 3.4 7.3E-05 35.3 9.0 57 7-65 15-72 (110)
211 KOG2253 U1 snRNP complex, subu 88.8 0.31 6.8E-06 52.8 3.0 69 107-184 38-107 (668)
212 COG5594 Uncharacterized integr 88.0 0.22 4.7E-06 55.4 1.2 30 2-31 205-235 (827)
213 KOG4410 5-formyltetrahydrofola 87.8 2.7 5.9E-05 41.4 8.3 46 110-160 331-376 (396)
214 PF14111 DUF4283: Domain of un 87.5 0.44 9.4E-06 42.3 2.6 119 7-144 17-140 (153)
215 smart00596 PRE_C2HC PRE_C2HC d 86.7 0.82 1.8E-05 35.5 3.3 63 124-188 2-65 (69)
216 PF11767 SET_assoc: Histone ly 86.6 2.1 4.6E-05 33.1 5.6 42 16-66 11-52 (66)
217 PF03468 XS: XS domain; Inter 86.5 0.94 2E-05 39.1 4.0 59 111-172 10-78 (116)
218 KOG4483 Uncharacterized conser 84.9 1.5 3.2E-05 45.1 5.1 59 5-69 391-449 (528)
219 KOG2891 Surface glycoprotein [ 84.1 5.8 0.00013 39.0 8.5 119 16-142 48-194 (445)
220 PF04847 Calcipressin: Calcipr 83.9 2.1 4.6E-05 39.9 5.4 59 17-81 7-69 (184)
221 PRK10590 ATP-dependent RNA hel 83.0 68 0.0015 34.0 17.7 16 50-65 222-237 (456)
222 KOG4483 Uncharacterized conser 81.7 4.4 9.6E-05 41.7 7.0 59 108-172 390-448 (528)
223 KOG4213 RNA-binding protein La 81.4 0.5 1.1E-05 43.5 0.2 68 109-180 111-179 (205)
224 KOG4574 RNA-binding protein (c 81.3 1.1 2.3E-05 50.1 2.7 73 112-190 301-376 (1007)
225 KOG0804 Cytoplasmic Zn-finger 80.5 5.9 0.00013 41.5 7.5 67 109-177 74-142 (493)
226 COG5193 LHP1 La protein, small 79.1 1.2 2.5E-05 45.9 2.0 61 5-65 174-244 (438)
227 COG2242 CobL Precorrin-6B meth 77.5 57 0.0012 30.6 12.4 145 7-189 7-166 (187)
228 PF03880 DbpA: DbpA RNA bindin 74.3 12 0.00027 29.2 6.2 56 16-80 12-74 (74)
229 PF03468 XS: XS domain; Inter 73.0 4.3 9.2E-05 35.0 3.6 49 7-58 10-67 (116)
230 KOG4574 RNA-binding protein (c 72.9 3.3 7.2E-05 46.4 3.5 74 5-84 298-375 (1007)
231 KOG4213 RNA-binding protein La 72.4 4 8.7E-05 37.7 3.4 57 5-65 111-168 (205)
232 PF10567 Nab6_mRNP_bdg: RNA-re 72.2 10 0.00022 37.7 6.3 82 105-186 11-106 (309)
233 PF14026 DUF4242: Protein of u 71.2 37 0.0008 26.9 8.3 59 112-172 3-68 (77)
234 TIGR02542 B_forsyth_147 Bacter 71.0 7.1 0.00015 33.5 4.3 115 13-161 11-129 (145)
235 KOG2854 Possible pfkB family c 70.6 30 0.00065 35.2 9.3 39 5-43 81-119 (343)
236 PF07530 PRE_C2HC: Associated 69.5 5.4 0.00012 31.0 3.1 62 20-82 2-64 (68)
237 PF07292 NID: Nmi/IFP 35 domai 68.4 5.9 0.00013 32.4 3.2 31 154-184 1-33 (88)
238 PRK14548 50S ribosomal protein 68.2 17 0.00038 29.4 5.9 53 116-171 27-81 (84)
239 PF11767 SET_assoc: Histone ly 66.8 25 0.00053 27.2 6.2 54 119-181 10-64 (66)
240 TIGR03636 L23_arch archaeal ri 66.6 21 0.00046 28.5 6.0 54 112-168 16-71 (77)
241 PF00403 HMA: Heavy-metal-asso 66.6 23 0.0005 26.1 6.1 57 111-173 1-61 (62)
242 PF02714 DUF221: Domain of unk 64.7 8.7 0.00019 38.6 4.4 33 50-82 1-33 (325)
243 KOG4019 Calcineurin-mediated s 63.9 6.8 0.00015 36.3 3.1 72 110-187 11-89 (193)
244 smart00596 PRE_C2HC PRE_C2HC d 63.1 7.6 0.00016 30.3 2.7 62 20-82 2-64 (69)
245 CHL00123 rps6 ribosomal protei 63.1 21 0.00046 29.6 5.7 62 14-75 15-90 (97)
246 cd03071 PDI_b'_NRX PDIb' famil 62.3 28 0.00061 29.6 6.1 85 48-133 15-114 (116)
247 COG5638 Uncharacterized conser 61.2 28 0.0006 36.2 7.1 36 4-39 145-185 (622)
248 PF14893 PNMA: PNMA 60.6 7.2 0.00016 39.8 2.9 52 5-58 18-73 (331)
249 PF02714 DUF221: Domain of unk 60.1 9.5 0.00021 38.3 3.7 36 154-190 1-36 (325)
250 KOG4410 5-formyltetrahydrofola 57.3 8 0.00017 38.2 2.4 48 6-58 331-378 (396)
251 KOG4008 rRNA processing protei 54.8 9.5 0.0002 36.8 2.4 36 1-36 36-71 (261)
252 PHA00019 IV phage assembly pro 53.5 88 0.0019 33.0 9.8 30 13-42 24-53 (428)
253 cd04908 ACT_Bt0572_1 N-termina 53.3 92 0.002 23.2 8.4 48 122-173 14-62 (66)
254 COG0079 HisC Histidinol-phosph 51.9 1.6E+02 0.0035 30.3 11.2 50 4-64 145-198 (356)
255 TIGR01124 ilvA_2Cterm threonin 50.1 2.5E+02 0.0053 30.5 12.7 63 108-172 417-483 (499)
256 COG0030 KsgA Dimethyladenosine 49.7 55 0.0012 32.3 7.0 44 6-65 96-139 (259)
257 PF15513 DUF4651: Domain of un 49.2 35 0.00076 26.1 4.2 20 19-38 8-27 (62)
258 PRK11230 glycolate oxidase sub 47.6 2.1E+02 0.0046 30.9 11.7 59 8-67 192-254 (499)
259 cd06405 PB1_Mekk2_3 The PB1 do 46.8 1.5E+02 0.0032 23.6 7.9 61 116-184 15-76 (79)
260 PRK09631 DNA topoisomerase IV 46.8 94 0.002 34.7 8.9 57 5-65 220-280 (635)
261 PRK08559 nusG transcription an 46.7 43 0.00093 30.1 5.3 62 1-68 1-67 (153)
262 TIGR02515 IV_pilus_PilQ type I 46.6 42 0.00092 35.2 6.1 142 16-173 7-163 (418)
263 PF14026 DUF4242: Protein of u 46.4 1.5E+02 0.0032 23.5 8.8 56 8-65 3-65 (77)
264 COG5193 LHP1 La protein, small 46.3 7.7 0.00017 40.1 0.5 62 108-169 173-244 (438)
265 KOG3262 H/ACA small nucleolar 46.1 53 0.0012 30.6 5.7 18 124-141 89-106 (215)
266 PRK08279 long-chain-acyl-CoA s 45.6 2.2E+02 0.0048 30.8 11.8 41 15-55 470-512 (600)
267 KOG3973 Uncharacterized conser 45.4 2.7E+02 0.0058 28.7 10.9 9 121-129 198-206 (465)
268 KOG2295 C2H2 Zn-finger protein 45.1 3.3 7.2E-05 44.3 -2.4 61 5-65 231-294 (648)
269 PF08002 DUF1697: Protein of u 43.5 1.3E+02 0.0028 26.5 7.8 122 7-142 5-132 (137)
270 PF07876 Dabb: Stress responsi 43.1 1.7E+02 0.0037 23.3 8.0 56 113-168 5-71 (97)
271 smart00434 TOP4c DNA Topoisome 42.9 62 0.0013 34.5 6.6 60 5-65 232-295 (445)
272 COG2608 CopZ Copper chaperone 42.6 1.6E+02 0.0034 22.7 7.3 58 109-172 3-64 (71)
273 PRK15321 putative type III sec 42.1 8.6 0.00019 31.9 0.0 51 114-172 26-77 (120)
274 COG5353 Uncharacterized protei 42.0 96 0.0021 28.0 6.5 59 2-60 84-155 (161)
275 PRK06131 dihydroxy-acid dehydr 41.3 98 0.0021 34.0 7.9 67 108-189 372-439 (571)
276 CHL00123 rps6 ribosomal protei 41.1 1.4E+02 0.0031 24.6 7.2 68 110-180 9-90 (97)
277 KOG4008 rRNA processing protei 40.9 24 0.00052 34.1 2.8 35 107-141 38-72 (261)
278 PF14893 PNMA: PNMA 40.5 30 0.00065 35.3 3.7 53 107-161 16-72 (331)
279 KOG3973 Uncharacterized conser 40.3 2E+02 0.0043 29.6 9.2 6 125-130 244-249 (465)
280 PF10915 DUF2709: Protein of u 39.9 2.5E+02 0.0054 26.5 9.1 73 31-134 36-117 (238)
281 smart00666 PB1 PB1 domain. Pho 39.2 1.6E+02 0.0035 22.7 7.1 62 114-182 14-78 (81)
282 KOG2040 Glycine dehydrogenase 39.1 22 0.00047 39.4 2.5 64 108-172 453-531 (1001)
283 PRK00911 dihydroxy-acid dehydr 38.9 80 0.0017 34.6 6.7 38 150-189 397-434 (552)
284 cd06313 PBP1_ABC_sugar_binding 38.6 1.2E+02 0.0027 28.9 7.7 21 48-68 97-117 (272)
285 KOG1175 Acyl-CoA synthetase [L 38.1 29 0.00063 38.5 3.3 115 17-170 508-623 (626)
286 COG3254 Uncharacterized conser 37.8 91 0.002 26.4 5.4 47 122-171 25-71 (105)
287 cd00187 TOP4c DNA Topoisomeras 37.3 1.1E+02 0.0023 32.7 7.3 58 6-65 226-287 (445)
288 KOG3424 40S ribosomal protein 37.1 68 0.0015 27.7 4.6 50 119-169 33-87 (132)
289 TIGR01033 DNA-binding regulato 37.1 3.7E+02 0.0081 26.1 10.5 41 8-55 97-143 (238)
290 PRK14459 ribosomal RNA large s 37.0 1.8E+02 0.0039 30.3 8.8 62 12-80 144-222 (373)
291 COG1163 DRG Predicted GTPase [ 36.7 2.4E+02 0.0052 29.0 9.2 39 16-67 198-236 (365)
292 PRK01178 rps24e 30S ribosomal 36.6 1.5E+02 0.0033 24.7 6.7 50 120-170 30-84 (99)
293 KOG4365 Uncharacterized conser 36.6 6.3 0.00014 41.1 -1.9 76 110-185 4-79 (572)
294 PF04278 Tic22: Tic22-like fam 36.5 4.4E+02 0.0095 26.1 12.5 143 16-174 62-224 (274)
295 PRK10629 EnvZ/OmpR regulon mod 36.4 2.3E+02 0.0049 24.8 8.1 67 111-185 37-108 (127)
296 COG1058 CinA Predicted nucleot 35.7 77 0.0017 31.2 5.5 70 106-177 177-248 (255)
297 TIGR02517 type_II_gspD general 35.6 3.1E+02 0.0067 30.2 11.0 29 139-172 295-326 (594)
298 PF09869 DUF2096: Uncharacteri 35.6 1.4E+02 0.003 27.4 6.7 51 111-172 114-164 (169)
299 COG1587 HemD Uroporphyrinogen- 35.5 4.1E+02 0.0089 25.5 10.7 162 6-172 2-195 (248)
300 KOG2891 Surface glycoprotein [ 35.2 35 0.00076 33.7 3.0 34 6-39 150-195 (445)
301 COG0351 ThiD Hydroxymethylpyri 35.2 92 0.002 30.8 6.0 22 9-30 51-72 (263)
302 COG0345 ProC Pyrroline-5-carbo 34.9 1.7E+02 0.0036 29.0 7.8 126 6-140 29-158 (266)
303 PRK10560 hofQ outer membrane p 34.9 86 0.0019 32.6 6.1 59 18-80 3-68 (386)
304 KOG2295 C2H2 Zn-finger protein 34.2 5.6 0.00012 42.7 -2.7 54 107-160 229-282 (648)
305 PF15513 DUF4651: Domain of un 33.8 86 0.0019 24.0 4.3 18 124-141 9-26 (62)
306 PRK07868 acyl-CoA synthetase; 33.4 4.3E+02 0.0092 31.2 12.2 48 6-55 860-907 (994)
307 PRK11611 enhanced serine sensi 33.3 2.4E+02 0.0052 27.6 8.4 77 108-187 128-214 (246)
308 PF11411 DNA_ligase_IV: DNA li 33.0 31 0.00067 23.4 1.6 16 15-30 19-34 (36)
309 KOG3424 40S ribosomal protein 32.9 1.1E+02 0.0024 26.4 5.3 46 16-62 34-84 (132)
310 PRK14548 50S ribosomal protein 32.8 1.4E+02 0.003 24.2 5.7 54 9-65 24-79 (84)
311 KOG3262 H/ACA small nucleolar 32.5 3.8E+02 0.0083 25.1 9.0 32 110-144 81-112 (215)
312 TIGR03636 L23_arch archaeal ri 32.5 1E+02 0.0022 24.6 4.7 54 8-64 16-71 (77)
313 PRK09630 DNA topoisomerase IV 32.4 1.3E+02 0.0028 32.3 6.8 58 4-65 219-280 (479)
314 PRK13016 dihydroxy-acid dehydr 31.7 1.3E+02 0.0028 33.2 6.8 65 110-189 379-444 (577)
315 TIGR00110 ilvD dihydroxy-acid 31.7 2.9E+02 0.0064 30.2 9.5 65 109-189 355-419 (535)
316 smart00666 PB1 PB1 domain. Pho 31.0 1.9E+02 0.0042 22.3 6.3 64 9-77 13-78 (81)
317 cd03237 ABC_RNaseL_inhibitor_d 30.9 1.1E+02 0.0024 29.5 5.9 9 22-30 96-104 (246)
318 PF07876 Dabb: Stress responsi 30.6 2.3E+02 0.005 22.5 6.9 59 7-65 3-72 (97)
319 COG4010 Uncharacterized protei 30.3 1.2E+02 0.0026 27.2 5.2 47 116-172 118-164 (170)
320 KOG4019 Calcineurin-mediated s 30.2 49 0.0011 30.8 2.9 70 6-81 11-88 (193)
321 COG4874 Uncharacterized protei 30.0 2.2E+02 0.0049 27.8 7.4 30 1-31 154-183 (318)
322 PF08734 GYD: GYD domain; Int 29.8 3.1E+02 0.0066 22.3 7.9 43 19-65 22-65 (91)
323 KOG1177 Long chain fatty acid 29.6 3E+02 0.0065 29.9 8.9 28 15-42 492-519 (596)
324 PRK14464 ribosomal RNA large s 29.6 54 0.0012 33.7 3.5 42 28-79 138-182 (344)
325 TIGR00387 glcD glycolate oxida 29.1 5.1E+02 0.011 27.0 10.9 51 15-66 142-196 (413)
326 COG0318 CaiC Acyl-CoA syntheta 29.0 4.3E+02 0.0094 28.4 10.6 41 16-56 433-474 (534)
327 cd00874 RNA_Cyclase_Class_II R 28.7 3.7E+02 0.008 27.4 9.3 45 111-156 188-235 (326)
328 PTZ00237 acetyl-CoA synthetase 28.5 2.5E+02 0.0053 31.1 8.8 48 6-55 516-564 (647)
329 PF00521 DNA_topoisoIV: DNA gy 28.4 1.1E+02 0.0023 32.4 5.6 56 6-65 217-276 (426)
330 PRK12758 DNA topoisomerase IV 28.2 2.8E+02 0.0061 32.1 9.0 58 4-65 240-301 (869)
331 PRK07867 acyl-CoA synthetase; 28.2 4.2E+02 0.009 28.3 10.3 40 16-55 413-453 (529)
332 TIGR01063 gyrA DNA gyrase, A s 28.1 1.5E+02 0.0032 34.2 7.0 59 5-65 248-310 (800)
333 PRK00110 hypothetical protein; 28.0 5.8E+02 0.013 24.9 10.7 42 17-65 108-156 (245)
334 PF00276 Ribosomal_L23: Riboso 27.9 55 0.0012 26.8 2.6 48 116-163 26-85 (91)
335 cd05992 PB1 The PB1 domain is 27.4 2.7E+02 0.0059 21.3 6.6 48 119-172 19-69 (81)
336 PF09869 DUF2096: Uncharacteri 27.3 1E+02 0.0022 28.3 4.4 49 12-70 118-166 (169)
337 PF04026 SpoVG: SpoVG; InterP 27.3 97 0.0021 25.1 3.9 26 135-160 2-27 (84)
338 PRK09188 serine/threonine prot 27.1 2.4E+02 0.0052 29.2 7.8 39 16-55 240-279 (365)
339 KOG4806 Uncharacterized conser 27.0 1.9E+02 0.0041 29.8 6.7 24 107-133 356-379 (454)
340 KOG0735 AAA+-type ATPase [Post 27.0 64 0.0014 36.5 3.6 57 10-70 629-685 (952)
341 PRK03584 acetoacetyl-CoA synth 27.0 3.2E+02 0.007 30.0 9.4 41 16-56 530-571 (655)
342 PRK11901 hypothetical protein; 26.9 1.3E+02 0.0028 30.7 5.5 60 4-68 244-305 (327)
343 PRK05560 DNA gyrase subunit A; 26.9 1.8E+02 0.0039 33.5 7.4 59 5-65 251-313 (805)
344 PF08206 OB_RNB: Ribonuclease 26.7 20 0.00044 26.6 -0.1 37 150-186 7-44 (58)
345 cd06398 PB1_Joka2 The PB1 doma 26.3 2.6E+02 0.0056 22.9 6.3 58 120-183 24-85 (91)
346 TIGR01061 parC_Gpos DNA topois 26.0 1.8E+02 0.0039 33.2 7.1 58 5-64 248-309 (738)
347 PF02426 MIase: Muconolactone 26.0 3.7E+02 0.0081 22.1 8.0 64 11-78 9-82 (91)
348 PF00398 RrnaAD: Ribosomal RNA 25.8 1E+02 0.0022 30.0 4.6 45 5-66 97-143 (262)
349 PF08734 GYD: GYD domain; Int 25.7 2.7E+02 0.0058 22.6 6.4 42 123-168 22-64 (91)
350 PRK07400 30S ribosomal protein 25.6 3.8E+02 0.0082 27.1 8.8 36 16-56 12-53 (318)
351 PF00403 HMA: Heavy-metal-asso 25.5 2.6E+02 0.0057 20.2 6.2 53 7-65 1-57 (62)
352 PRK13259 regulatory protein Sp 25.4 1E+02 0.0023 25.5 3.8 27 135-161 2-28 (94)
353 PTZ00240 60S ribosomal protein 25.3 4.5E+02 0.0097 26.9 9.1 47 19-65 12-64 (323)
354 PLN02805 D-lactate dehydrogena 25.1 7.5E+02 0.016 27.2 11.5 51 15-66 276-330 (555)
355 cd06301 PBP1_rhizopine_binding 25.1 1.5E+02 0.0033 28.0 5.7 22 47-68 96-117 (272)
356 PF09707 Cas_Cas2CT1978: CRISP 24.7 1.4E+02 0.0031 24.3 4.5 48 5-55 25-72 (86)
357 KOG2014 SMT3/SUMO-activating c 24.6 43 0.00092 33.7 1.6 46 115-161 241-287 (331)
358 PRK00453 rpsF 30S ribosomal pr 24.5 3.1E+02 0.0067 22.9 6.7 61 13-73 10-84 (108)
359 PRK11901 hypothetical protein; 24.4 1.7E+02 0.0036 29.9 5.7 62 110-176 246-309 (327)
360 PRK10727 DNA-binding transcrip 24.4 3.8E+02 0.0081 26.6 8.6 29 49-77 153-181 (343)
361 COG1393 ArsC Arsenate reductas 24.3 36 0.00079 29.3 1.0 11 121-131 106-116 (117)
362 KOG1148 Glutaminyl-tRNA synthe 24.2 48 0.001 36.3 2.0 42 119-160 231-289 (764)
363 PRK01178 rps24e 30S ribosomal 24.1 2.5E+02 0.0054 23.5 5.9 51 16-68 30-85 (99)
364 KOG0207 Cation transport ATPas 23.8 1.2E+03 0.026 27.3 15.4 149 16-172 41-208 (951)
365 COG0129 IlvD Dihydroxyacid deh 23.8 4E+02 0.0087 29.4 8.8 33 156-189 419-451 (575)
366 PF07045 DUF1330: Protein of u 23.8 2.6E+02 0.0057 20.9 5.6 43 125-169 10-57 (65)
367 PF08503 DapH_N: Tetrahydrodip 23.6 2.8E+02 0.006 22.5 5.8 31 155-185 44-74 (83)
368 COG4010 Uncharacterized protei 23.6 94 0.002 27.9 3.4 48 12-69 118-165 (170)
369 PF11746 DUF3303: Protein of u 23.5 4.1E+02 0.0088 21.6 7.6 78 8-85 3-88 (91)
370 PF01037 AsnC_trans_reg: AsnC 23.5 3.1E+02 0.0068 20.3 6.5 51 18-72 11-62 (74)
371 PRK10905 cell division protein 23.4 1.7E+02 0.0036 29.8 5.5 57 9-67 248-306 (328)
372 PF01282 Ribosomal_S24e: Ribos 23.4 2.9E+02 0.0062 22.3 6.0 48 15-63 11-63 (84)
373 PF08544 GHMP_kinases_C: GHMP 23.3 2.6E+02 0.0056 21.4 5.8 41 20-65 37-77 (85)
374 PF09078 CheY-binding: CheY bi 23.2 2.7E+02 0.0059 21.5 5.4 60 111-182 2-64 (65)
375 PRK07008 long-chain-fatty-acid 23.2 8.5E+02 0.019 25.8 11.6 41 15-55 440-481 (539)
376 COG0788 PurU Formyltetrahydrof 23.1 7.1E+02 0.015 24.9 9.6 28 107-134 139-166 (287)
377 COG2088 SpoVG Uncharacterized 23.1 1E+02 0.0022 25.2 3.2 27 135-161 2-28 (95)
378 PRK14461 ribosomal RNA large s 23.0 1.1E+02 0.0024 31.8 4.4 41 31-81 168-213 (371)
379 PRK05620 long-chain-fatty-acid 23.0 6.6E+02 0.014 26.9 10.7 40 16-55 462-502 (576)
380 cd06314 PBP1_tmGBP Periplasmic 22.9 2.8E+02 0.0061 26.2 7.1 21 48-68 94-114 (271)
381 PRK09274 peptide synthase; Pro 22.7 4.2E+02 0.0091 28.2 9.1 41 16-56 452-492 (552)
382 KOG2945 Predicted RNA-binding 22.7 86 0.0019 32.4 3.4 18 152-169 288-306 (365)
383 TIGR01217 ac_ac_CoA_syn acetoa 22.7 3.6E+02 0.0079 29.8 8.8 41 16-56 531-572 (652)
384 PF01912 eIF-6: eIF-6 family; 22.7 1.1E+02 0.0024 28.9 4.0 52 13-65 68-125 (199)
385 PRK09224 threonine dehydratase 22.6 5.5E+02 0.012 27.8 9.8 62 109-172 422-487 (504)
386 KOG1295 Nonsense-mediated deca 22.4 74 0.0016 32.9 2.9 61 5-65 7-70 (376)
387 PTZ00191 60S ribosomal protein 22.3 4.9E+02 0.011 23.4 7.7 52 113-167 85-139 (145)
388 PF13046 DUF3906: Protein of u 22.3 94 0.002 23.9 2.7 34 17-52 30-63 (64)
389 PTZ00191 60S ribosomal protein 22.2 2.2E+02 0.0048 25.6 5.5 55 4-63 82-138 (145)
390 PF14111 DUF4283: Domain of un 22.2 35 0.00075 30.0 0.4 64 120-188 28-92 (153)
391 COG4029 Uncharacterized protei 21.8 4.3E+02 0.0093 23.1 6.9 69 1-78 1-69 (142)
392 PF05336 DUF718: Domain of unk 21.7 2E+02 0.0044 24.1 5.0 44 123-169 25-68 (106)
393 cd06404 PB1_aPKC PB1 domain is 21.6 4.4E+02 0.0096 21.4 7.7 55 6-65 9-66 (83)
394 KOG0256 1-aminocyclopropane-1- 21.6 1.4E+02 0.003 31.5 4.6 78 107-192 225-307 (471)
395 PRK13344 spxA transcriptional 21.4 99 0.0021 27.1 3.2 11 121-131 105-115 (132)
396 cd06285 PBP1_LacI_like_7 Ligan 21.4 4E+02 0.0086 25.0 7.8 29 49-77 91-119 (265)
397 TIGR02517 type_II_gspD general 21.3 2.3E+02 0.005 31.2 6.7 26 17-42 3-28 (594)
398 cd04880 ACT_AAAH-PDT-like ACT 21.2 3E+02 0.0066 20.8 5.7 50 122-172 12-65 (75)
399 PRK07824 O-succinylbenzoic aci 21.1 4.8E+02 0.01 25.9 8.7 39 16-54 265-304 (358)
400 cd00225 API3 Ascaris pepsin in 21.1 1.2E+02 0.0026 27.3 3.5 24 5-28 18-42 (159)
401 COG3444 Phosphotransferase sys 21.1 3.2E+02 0.007 24.9 6.4 24 45-68 74-97 (159)
402 COG1748 LYS9 Saccharopine dehy 21.0 5.4E+02 0.012 27.0 8.9 77 112-189 120-200 (389)
403 PRK10401 DNA-binding transcrip 20.9 5.3E+02 0.012 25.5 8.9 29 49-77 153-181 (346)
404 COG0217 Uncharacterized conser 20.8 6.4E+02 0.014 24.6 8.7 54 110-170 95-159 (241)
405 COG2061 ACT-domain-containing 20.8 6.5E+02 0.014 23.0 11.9 62 108-172 87-152 (170)
406 PRK14181 bifunctional 5,10-met 20.7 5.1E+02 0.011 26.0 8.4 24 159-182 135-158 (287)
407 CHL00100 ilvH acetohydroxyacid 20.7 2.4E+02 0.0053 26.0 5.7 37 19-56 57-93 (174)
408 PF13607 Succ_CoA_lig: Succiny 20.6 5.9E+02 0.013 22.4 9.1 60 6-80 30-89 (138)
409 PF14082 DUF4263: Domain of un 20.5 1.8E+02 0.0039 26.1 4.8 13 17-29 6-18 (164)
410 PRK06018 putative acyl-CoA syn 20.5 8.8E+02 0.019 25.7 11.0 40 16-55 442-482 (542)
411 COG1691 NCAIR mutase (PurE)-re 20.4 89 0.0019 30.3 2.8 67 10-77 12-79 (254)
412 cd01575 PBP1_GntR Ligand-bindi 20.2 6E+02 0.013 23.5 8.7 29 49-77 93-121 (268)
413 TIGR00112 proC pyrroline-5-car 20.2 4.4E+02 0.0096 25.3 7.8 124 6-140 10-141 (245)
414 TIGR02316 propion_prpE propion 20.0 5.9E+02 0.013 27.8 9.7 41 16-56 504-545 (628)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.2e-35 Score=301.04 Aligned_cols=169 Identities=21% Similarity=0.408 Sum_probs=151.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||++||+++||++|+++|++|++|++|+|++|+.++++||||||+|+++++|++||+ +..+|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 467899999999999999999999999999999999999999999999999999999999998 556899999999887
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
.+..+ ....++|||.|||+++||+||+++|++||+|++|+|++|+.|+++|+||||+|++
T Consensus 185 ~p~~~--------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 185 RPGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred ccccc--------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 54221 1234679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CccCC--cEEEEEEccCCCCC
Q 035855 161 EDAVDRVLQKTF-HDLNG--KQVEVKRALPKDAN 191 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~G--r~I~V~~a~~k~~~ 191 (456)
+++|++||++++ +.|++ ++|+|++++.+...
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 999999999888 66665 68999998876544
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.4e-30 Score=259.60 Aligned_cols=182 Identities=19% Similarity=0.413 Sum_probs=146.1
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcC-CCceEEEEecc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSL-DGRTVEAKRAM 81 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l-~Gr~I~v~~a~ 81 (456)
-|.|||+.||.|+.||+|+.+|++.|+|.+++||+|+.++.+||||||+|+++++|++||+. .++| .+|.|.|+.+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 47899999999999999999999999999999999999999999999999999999999994 4444 67888776542
Q ss_pred h------------hHHHhhhcc--------------cCCCCCCC------------------------------------
Q 035855 82 S------------REEQQFSAR--------------SGNTNSGR------------------------------------ 99 (456)
Q Consensus 82 ~------------~~~~~~~~~--------------~~~~~~~~------------------------------------ 99 (456)
. +.+.+.... ....++.+
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 1 111110000 00000000
Q ss_pred -------CCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 100 -------SNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 100 -------~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
......+.+.+.|||+||+.+||||.|+++|++||.|++|++++| ||||+|.++++|.+||+.++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc
Confidence 001112456788999999999999999999999999999999977 99999999999999998888
Q ss_pred -CccCCcEEEEEEccCCCCCCCC
Q 035855 173 -HDLNGKQVEVKRALPKDANPGG 194 (456)
Q Consensus 173 -~~l~Gr~I~V~~a~~k~~~~~g 194 (456)
++|+|..|+|.+|+|.+++..-
T Consensus 315 gkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred CceecCceEEEEecCChhhhccc
Confidence 9999999999999998776554
No 3
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=263.62 Aligned_cols=177 Identities=63% Similarity=1.107 Sum_probs=166.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+.++|||++|+|++|||.|+++|.+|++|.+|+||+|+.++++|+|.||+|++++.+.++|. ..|+|+++.|+++++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999888 68999999999999999
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
+.+++...+. .++++|||+.||.++++++|+++|++|+.|.++.||.|+++.++|+|+||+|++++
T Consensus 85 r~~~~~~~~~--------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~ 150 (311)
T KOG4205|consen 85 REDQTKVGRH--------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED 150 (311)
T ss_pred cccccccccc--------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc
Confidence 8887654332 26899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccCCcEEEEEEccCCCCCCCC
Q 035855 163 AVDRVLQKTFHDLNGKQVEVKRALPKDANPGG 194 (456)
Q Consensus 163 aa~aal~~~~~~l~Gr~I~V~~a~~k~~~~~g 194 (456)
++++++.+..++|++++|+|+.|.||+.....
T Consensus 151 sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 151 SVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccceecccceeeecCceeeEeeccchhhcccc
Confidence 99999999999999999999999999877554
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.4e-30 Score=275.85 Aligned_cols=179 Identities=21% Similarity=0.444 Sum_probs=153.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|.++++|++||+ +...|.++.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45899999999999999999999999999999999999999999999999999999999998 4568999999997543
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
.....+.... .........++|||.||++++++++|+++|++||.|++|+|++|+.++++||||||+|+++
T Consensus 186 ~~p~a~~~~~---------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 186 NMPQAQPIID---------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred cccccccccc---------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 2211100000 0001112457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
++|++||+.++ .+|+|+.|+|.++.+++..
T Consensus 257 e~A~kAI~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHHHHhCCCeeCCeEEEEEecCCCccc
Confidence 99999998888 9999999999999976544
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.3e-29 Score=255.02 Aligned_cols=187 Identities=21% Similarity=0.367 Sum_probs=149.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCC--ceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDG--RTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~G--r~I~v~~ 79 (456)
..++|||+|||+++++++|+++|++||+|+.++|+.++.++.+++||||+|++.++|++||+.+ ..+.+ ++|.|++
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999999888999999999999999999999843 34544 5688887
Q ss_pred cchhHHHhhh---c--------ccCC-------------------------------------------------CCCCC
Q 035855 80 AMSREEQQFS---A--------RSGN-------------------------------------------------TNSGR 99 (456)
Q Consensus 80 a~~~~~~~~~---~--------~~~~-------------------------------------------------~~~~~ 99 (456)
+......... . .... .....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7533211000 0 0000 00000
Q ss_pred ------------CCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 035855 100 ------------SNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV 167 (456)
Q Consensus 100 ------------~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aa 167 (456)
..........++|||.|||+++++++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00000012234799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CccCCcEEEEEEccCCCC
Q 035855 168 LQKTF-HDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 168 l~~~~-~~l~Gr~I~V~~a~~k~~ 190 (456)
|+.++ ..|++|+|+|+++..|+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 88766 999999999999998864
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.1e-29 Score=255.23 Aligned_cols=166 Identities=25% Similarity=0.517 Sum_probs=148.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +..+|.+++|.|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999998 5568999999999886
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+... ....++|||.|||.++++++|+++|++||.|+.++|+.|+.++.+++||||+|++.
T Consensus 82 ~~~~--------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSD--------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred cccc--------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 4321 12346899999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHHcC-CccCC--cEEEEEEccCCC
Q 035855 162 DAVDRVLQKTF-HDLNG--KQVEVKRALPKD 189 (456)
Q Consensus 162 eaa~aal~~~~-~~l~G--r~I~V~~a~~k~ 189 (456)
++|++||+.++ ..+.+ ++|.|+++..+.
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 99999998777 66666 678888887655
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=5.2e-29 Score=262.48 Aligned_cols=177 Identities=27% Similarity=0.483 Sum_probs=153.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+ +...|.++.|.|+.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 457899999999999999999999999999999999999999999999999999999999998 5668899999998765
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
............. .......++|||.|||.++|+++|+++|++||.|+.|.|++|+.++++++||||+|.+.
T Consensus 167 ~~~~~~~~~~~~~--------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~ 238 (457)
T TIGR01622 167 AEKNRAAKAATHQ--------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDA 238 (457)
T ss_pred hhhhhhhhccccc--------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCH
Confidence 4333222111000 01112368999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
++|++||+.++ .+|.+++|+|.++..
T Consensus 239 e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 239 EEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999998777 999999999999873
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=5.6e-30 Score=254.15 Aligned_cols=171 Identities=30% Similarity=0.536 Sum_probs=150.1
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc---CCcCCC--ceEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD---KHSLDG--RTVE 76 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~---~~~l~G--r~I~ 76 (456)
|.|.-||||+.||+.++|+||+++|++||.|.+|.|++|+.|+.++|||||+|.+.++|.+|+.. +..|.+ .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 45667899999999999999999999999999999999999999999999999999999998874 445555 5788
Q ss_pred EEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEE
Q 035855 77 AKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV 156 (456)
|+.++...++- ..+++|||+-|++.+||.||+++|++||.|++|.|++|.+ +.+||||||
T Consensus 111 vk~Ad~E~er~-------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV 170 (510)
T KOG0144|consen 111 VKYADGERERI-------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFV 170 (510)
T ss_pred ecccchhhhcc-------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEE
Confidence 88886554432 2568899999999999999999999999999999999976 889999999
Q ss_pred EeCCHHHHHHHHHHcC--CccCC--cEEEEEEccCCCCCC
Q 035855 157 SFDTEDAVDRVLQKTF--HDLNG--KQVEVKRALPKDANP 192 (456)
Q Consensus 157 ~F~s~eaa~aal~~~~--~~l~G--r~I~V~~a~~k~~~~ 192 (456)
+|.++|.|.+||+.++ .+++| .+|.|+||.++.++.
T Consensus 171 ~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 171 KFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred EEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 9999999999999888 55655 579999999887654
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=5.5e-28 Score=257.34 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=138.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHcC----CcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD-VLQTVVMRE-KTTGRPRGFGFVVFADPSILDRVLQDK----HSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d-~~tg~srGfaFVeF~d~e~A~kAl~~~----~~l~Gr~I~ 76 (456)
.+.++|||+|||+++|+++|+++|+++.+ |++++|+.. ..+.++++||||+|+++++|++|++.+ .+|+++.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999975 444444432 345688999999999999999999743 368899999
Q ss_pred EEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhc--CceeEEEEeecCCCCCcceEE
Q 035855 77 AKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAY--GHVTDVVIMYDQNTQRPRGFG 154 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~i~~d~~tg~~rGfA 154 (456)
|+|+.++.+.... .....++|||+||++++|||+|+++|++| |+|++|+++++ ||
T Consensus 216 VdwA~p~~~~d~~---------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg--------fA 272 (578)
T TIGR01648 216 VDWAEPEEEVDED---------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD--------YA 272 (578)
T ss_pred EEeeccccccccc---------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC--------eE
Confidence 9998765432211 11245789999999999999999999999 99999988743 99
Q ss_pred EEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 155 FISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 155 FV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
||+|+++++|++||+.++ ++|++++|+|+++++++..
T Consensus 273 FVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 273 FVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred EEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 999999999999998766 9999999999999987654
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.9e-28 Score=229.78 Aligned_cols=176 Identities=27% Similarity=0.488 Sum_probs=145.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~ 82 (456)
+-.|||+.|..+++.|+|++.|.+||+|.+++|++|..|.++|||+||.|.++++||+||+. ..+|..|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45699999999999999999999999999999999999999999999999999999999994 4588999999999976
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
+....-... .+-...-.....+.++|||+||+.-+||++|+++|+.||.|.+|+|.+|+ |||||.|++.|
T Consensus 142 Kp~e~n~~~----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkE 211 (321)
T KOG0148|consen 142 KPSEMNGKP----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKE 211 (321)
T ss_pred CccccCCCC----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchh
Confidence 652211100 00000112224578999999999999999999999999999999999884 59999999977
Q ss_pred HHHHHH-HHcCCccCCcEEEEEEccCCCC
Q 035855 163 AVDRVL-QKTFHDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 163 aa~aal-~~~~~~l~Gr~I~V~~a~~k~~ 190 (456)
+|.+|| ++++.+|.++.|+|.|-+..+.
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 666665 5555999999999998776544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.2e-27 Score=255.35 Aligned_cols=184 Identities=25% Similarity=0.486 Sum_probs=153.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCC----CceEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLD----GRTVEA 77 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~----Gr~I~v 77 (456)
..++|||+|||+++||++|+++|++||+|++++|+++. +++++|||||+|++.++|++|++ +..+|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34679999999999999999999999999999999986 78999999999999999999998 455677 889999
Q ss_pred EecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEE
Q 035855 78 KRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFIS 157 (456)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~ 157 (456)
.++..+.+++........... ..........+|||.||++++|+++|+++|++||+|++|+|+.| .+++++|||||+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~--~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQ--QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred ecccChhhhHHHHHhhHHhhh--hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 888776655322211110000 00111245678999999999999999999999999999999999 678999999999
Q ss_pred eCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 158 FDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 158 F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
|+++++|++|++.++ +.|++++|.|+++.+++.+
T Consensus 333 f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred eCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 999999999998777 9999999999999987643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.3e-27 Score=255.18 Aligned_cols=164 Identities=26% Similarity=0.511 Sum_probs=144.5
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecchhH
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~~~ 84 (456)
+|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|.++++|++||+. ...|.++.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999999999999999999999999999999984 456899999998874321
Q ss_pred HHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHH
Q 035855 85 EQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAV 164 (456)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa 164 (456)
... .....+|||+|||.++++++|+++|++||.|+.|+|++|. +++++|||||+|+++++|
T Consensus 82 ~~~------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A 142 (562)
T TIGR01628 82 SLR------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESA 142 (562)
T ss_pred ccc------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHH
Confidence 110 0134579999999999999999999999999999999885 578899999999999999
Q ss_pred HHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 165 DRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 165 ~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
++|+++++ ..++++.|.|....++.
T Consensus 143 ~~Ai~~lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 143 KAAIQKVNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred HHHHHHhcccEecCceEEEecccccc
Confidence 99998887 89999999997765543
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=1.6e-26 Score=246.14 Aligned_cols=159 Identities=23% Similarity=0.461 Sum_probs=132.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cC-CCceEEEEec
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SL-DGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l-~Gr~I~v~~a 80 (456)
..++|||+|||++++|++|+++|++||+|++|+||+| .++++||||||+|.++++|++||+.++ +| .++.|.|+++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3589999999999999999999999999999999999 689999999999999999999999543 44 3555555432
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc-eeEEEEe-ecCCCCCcceEEEEEe
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VTDVVIM-YDQNTQRPRGFGFISF 158 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~i~-~d~~tg~~rGfAFV~F 158 (456)
...++|||.|||+++|+++|+++|+++.+ |+++.|+ .+.++.+++|||||+|
T Consensus 136 --------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF 189 (578)
T TIGR01648 136 --------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEY 189 (578)
T ss_pred --------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEc
Confidence 13478999999999999999999999864 4555443 3345567899999999
Q ss_pred CCHHHHHHHHHHcC---CccCCcEEEEEEccCCC
Q 035855 159 DTEDAVDRVLQKTF---HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 159 ~s~eaa~aal~~~~---~~l~Gr~I~V~~a~~k~ 189 (456)
+++++|++|++++. +.|.++.|+|+|+.++.
T Consensus 190 ~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 190 ESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred CCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 99999999987664 46899999999988753
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=5.9e-26 Score=242.29 Aligned_cols=181 Identities=19% Similarity=0.342 Sum_probs=138.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCC
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQY------------GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKH 68 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~------------G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~ 68 (456)
+...++|||+|||+++|+++|++||+++ ..|+.+.+ .+.++||||+|.+.++|++||+ +..
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcCCCe
Confidence 4567999999999999999999999975 22333333 3457899999999999999997 556
Q ss_pred cCCCceEEEEecchhHHHh-hhc--ccCCC--CCC----CCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEE
Q 035855 69 SLDGRTVEAKRAMSREEQQ-FSA--RSGNT--NSG----RSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDV 139 (456)
Q Consensus 69 ~l~Gr~I~v~~a~~~~~~~-~~~--~~~~~--~~~----~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v 139 (456)
.|.++.|.|.+........ ... ..... ... ...........++|||.|||..+|+++|+++|++||.|+.|
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 7888899886543322100 000 00000 000 00111123456799999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 140 VIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 140 ~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
.|++|+.++.++|||||+|++.++|++||+.++ +.|.++.|.|+++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999999999999999999999999999998777 9999999999998754
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=4.6e-25 Score=234.17 Aligned_cols=179 Identities=17% Similarity=0.302 Sum_probs=139.7
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
...++|||+|||+ .+|+++|+++|++||+|++|+|++++ ++||||+|.+.++|++||+ +.+.|.+++|.|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999999864 5899999999999999998 45689999999998
Q ss_pred cchhHHHhhhccc----------C-CCCCCC------CCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc--eeEEE
Q 035855 80 AMSREEQQFSARS----------G-NTNSGR------SNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH--VTDVV 140 (456)
Q Consensus 80 a~~~~~~~~~~~~----------~-~~~~~~------~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~--V~~v~ 140 (456)
++........... . .....+ ........++++|||.|||.++||++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 7654321111000 0 000000 000111346789999999999999999999999998 88888
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE------EEEEEccCC
Q 035855 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ------VEVKRALPK 188 (456)
Q Consensus 141 i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~------I~V~~a~~k 188 (456)
|+.++. ..+++|||+|+++++|.+||.+++ ++|+++. |+|.+++++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 875443 257899999999999999988776 8999885 999998765
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=227.64 Aligned_cols=189 Identities=23% Similarity=0.470 Sum_probs=157.2
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~ 78 (456)
|+.+-.||||++||++++.++|.++|+.+|+|..|.|+.++.+...|||+||+|+-.|++++||+. ..+|.++.|.|+
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 345558999999999999999999999999999999999999999999999999999999999994 456999999999
Q ss_pred ecchhHHHhhhcccCCCCCC----C--CCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcce
Q 035855 79 RAMSREEQQFSARSGNTNSG----R--SNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRG 152 (456)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rG 152 (456)
.+.++...+......+.... . ........+..+|+|+|||+.+.++||+.+|++||.|.+|.|++.++ ++.+|
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcG 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCG 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccc
Confidence 88776544422211111110 0 00111123478999999999999999999999999999999997776 45569
Q ss_pred EEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCC
Q 035855 153 FGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 153 fAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~ 190 (456)
||||.|.+..+|..||+.++ +.|++|+|-|+||.+|+.
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999999999888 999999999999998863
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=8e-25 Score=232.33 Aligned_cols=167 Identities=16% Similarity=0.225 Sum_probs=136.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----cCCcCCCceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ----DKHSLDGRTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~----~~~~l~Gr~I~v~~a 80 (456)
+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|.+.++|++||+ +...|.+++|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999864 4799999999999999997 346799999999998
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
..++..... +.. ..........+|+|.||++.+|+++|+++|++||+|++|+|++++. +++|||+|++
T Consensus 76 ~~~~~~~~~----~~~----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~ 143 (481)
T TIGR01649 76 TSQEIKRDG----NSD----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFES 143 (481)
T ss_pred CCcccccCC----CCc----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECC
Confidence 754322111 000 0001112445799999999999999999999999999999987654 3689999999
Q ss_pred HHHHHHHHHHcC-CccCC--cEEEEEEccCCC
Q 035855 161 EDAVDRVLQKTF-HDLNG--KQVEVKRALPKD 189 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~G--r~I~V~~a~~k~ 189 (456)
.++|++|++.++ .+|.+ ++|+|++++++.
T Consensus 144 ~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 144 VNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred HHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 999999998777 88865 589999988644
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=6.2e-25 Score=223.56 Aligned_cols=184 Identities=24% Similarity=0.480 Sum_probs=150.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
.-+|.|.||||.|.+++|+.+|+.||.|++|.|.+.+ .++.+|||||.|.+..+|++||+ +.++|++|+|.|.|++.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 5689999999999999999999999999999999655 66777999999999999999999 77899999999999976
Q ss_pred hHHHhhhc----------------cc-CCC------------C---CC--C---------------------CC------
Q 035855 83 REEQQFSA----------------RS-GNT------------N---SG--R---------------------SN------ 101 (456)
Q Consensus 83 ~~~~~~~~----------------~~-~~~------------~---~~--~---------------------~~------ 101 (456)
+....... .. ... . .. . ..
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 53211100 00 000 0 00 0 00
Q ss_pred -------C--CCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-
Q 035855 102 -------G--GGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT- 171 (456)
Q Consensus 102 -------~--~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~- 171 (456)
. .......++|||+|||+++||++|+++|++||+|+.+.|+.++.|++++|.|||.|.++++++++|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0 000122378999999999999999999999999999999999999999999999999999999999887
Q ss_pred ---C---CccCCcEEEEEEccCCC
Q 035855 172 ---F---HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 172 ---~---~~l~Gr~I~V~~a~~k~ 189 (456)
. ..|+||.|.|..+.++.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchH
Confidence 2 46899999999988764
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.8e-24 Score=230.87 Aligned_cols=184 Identities=18% Similarity=0.320 Sum_probs=144.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+.+|+++|+++|++||.|+.+.|++++.+++++|||||+|.+.++|++||+ +...|.++.|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999999999999999999999999999998 5568899999999885
Q ss_pred hhHHHhhhcccC----C--CCC--CCCCCCCCcccccEEEEcCCCCC--C--------CHHHHHHHHHhcCceeEEEEee
Q 035855 82 SREEQQFSARSG----N--TNS--GRSNGGGGTIRTKKIFVGGLPPT--L--------TEDGFRQYFEAYGHVTDVVIMY 143 (456)
Q Consensus 82 ~~~~~~~~~~~~----~--~~~--~~~~~~~~~~~~~~LfV~nLp~~--~--------teedL~~~F~~fG~V~~v~i~~ 143 (456)
............ . ... ..........++++|+|.||... + ..++|+++|++||.|+.|+|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 433221111000 0 000 00000112346789999999632 1 2368999999999999999987
Q ss_pred cC---CCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 144 DQ---NTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 144 d~---~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
+. .+...+|+|||+|+++++|++||+.++ ..|+++.|.|.+...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 53 345568999999999999999998888 999999999988643
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=3.6e-25 Score=198.34 Aligned_cols=169 Identities=28% Similarity=0.497 Sum_probs=151.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
.+.||||+||+..++|+.|.|+|-+.++|++++|.+|+.+...+|||||||.++|+|+-|++ ++.+|-+|+|+|.++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 35799999999999999999999999999999999999999999999999999999999998 7889999999998875
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeE-EEEeecCCCCCcceEEEEEeCC
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD-VVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~i~~d~~tg~~rGfAFV~F~s 160 (456)
...+ + ..-...|||+||.++++|..|.++|+.||.|.. -+||+|.+|+.+++|+||.|++
T Consensus 88 ~~~~--------n-----------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 88 AHQK--------N-----------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred cccc--------c-----------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 1110 0 013378999999999999999999999998655 5899999999999999999999
Q ss_pred HHHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 161 EDAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
.|++++|++.++ ..+..++|+|+.+..++.+
T Consensus 149 feasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 999999999888 8889999999999877654
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.9e-24 Score=202.83 Aligned_cols=169 Identities=25% Similarity=0.483 Sum_probs=150.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+...+.|.|.=||..+|+|||+.+|...|+|+.|++++|+.++.+.||+||.|-+++||++||. +...|..++|+|..
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3456779999999999999999999999999999999999999999999999999999999999 55578889999999
Q ss_pred cchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC
Q 035855 80 AMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD 159 (456)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~ 159 (456)
+.+..+. ++...|||..||+.+|..||+++|++||.|..-+|+.|..|+.+||.+||.|+
T Consensus 118 ARPSs~~--------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD 177 (360)
T KOG0145|consen 118 ARPSSDS--------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD 177 (360)
T ss_pred ccCChhh--------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec
Confidence 8765443 35567999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcC-Ccc--CCcEEEEEEccCCCC
Q 035855 160 TEDAVDRVLQKTF-HDL--NGKQVEVKRALPKDA 190 (456)
Q Consensus 160 s~eaa~aal~~~~-~~l--~Gr~I~V~~a~~k~~ 190 (456)
.+++|+.||+.++ ..- .-.+|.|+++..+..
T Consensus 178 Kr~EAe~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 178 KRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred chhHHHHHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 9999999988777 332 346799999886643
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=7.3e-25 Score=208.61 Aligned_cols=148 Identities=29% Similarity=0.573 Sum_probs=132.3
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a~~~ 83 (456)
-+|||+|||.++++.+|+.+|++||.|++|.|+++ |+||..+|+..|+.||+++| +|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999984 99999999999999999766 799999999887654
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
. ..+.+|+|.||.+.++.+||++.|++||.|.+++|++| ++||+|+..++
T Consensus 75 s----------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~ed 124 (346)
T KOG0109|consen 75 S----------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAED 124 (346)
T ss_pred C----------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccc
Confidence 1 14588999999999999999999999999999999977 99999999777
Q ss_pred HHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 164 VDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 164 a~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
+..|++.++ .+|+|++++|..+..+-+.
T Consensus 125 a~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 125 AVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred hHHHHhcccccccccceeeeeeecccccc
Confidence 777776665 9999999999999876543
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=3.7e-22 Score=210.44 Aligned_cols=179 Identities=22% Similarity=0.361 Sum_probs=139.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
.++|||+|||+++||++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+ +..+|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 5899999999999999999999999999999999999899999999999999999999998 45678999999999542
Q ss_pred hHHHhh--------------------------hc---ccC-------------------------CC-CCC---------
Q 035855 83 REEQQF--------------------------SA---RSG-------------------------NT-NSG--------- 98 (456)
Q Consensus 83 ~~~~~~--------------------------~~---~~~-------------------------~~-~~~--------- 98 (456)
...... .. ... .. ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 00 000 00 000
Q ss_pred ----C--CCCCCCcccccEEEEcCCCCCCC----------HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 99 ----R--SNGGGGTIRTKKIFVGGLPPTLT----------EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 99 ----~--~~~~~~~~~~~~LfV~nLp~~~t----------eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
. .........+++|+|.||....+ ++||+++|++||.|++|.|.. ...+|++||+|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHH
Confidence 0 00000235678899999965544 378999999999999999863 345789999999999
Q ss_pred HHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 163 AVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 163 aa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
+|++|++.++ ..|+++.|+|.+...
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 9999998888 999999999998653
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.3e-22 Score=190.55 Aligned_cols=186 Identities=24% Similarity=0.372 Sum_probs=145.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcC--CCceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSL--DGRTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l--~Gr~I~v~~ 79 (456)
.+-.|||.+||+.+|..||+++|++||.|+..+|+.|..++.+||.+||.|..+++|++||+ +.++- .-.+|.||+
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999 33333 346799998
Q ss_pred cchhHHHhhhc---c---cC------------------CCCCC-----CC--------------CCCCCcccccEEEEcC
Q 035855 80 AMSREEQQFSA---R---SG------------------NTNSG-----RS--------------NGGGGTIRTKKIFVGG 116 (456)
Q Consensus 80 a~~~~~~~~~~---~---~~------------------~~~~~-----~~--------------~~~~~~~~~~~LfV~n 116 (456)
+.......... . .. +...+ +. ..........+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 86432211000 0 00 00000 00 0111123457899999
Q ss_pred CCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHHcCCccCCcEEEEEEccCCC
Q 035855 117 LPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRV-LQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 117 Lp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aa-l~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
|.++++|.-|+++|.+||.|+.|+|++|..|.+.|||+||++.+-++|..| ..++...|.+|.|.|.+...|.
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999995544444 4555599999999999987663
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.5e-22 Score=189.17 Aligned_cols=188 Identities=26% Similarity=0.466 Sum_probs=155.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC---cCCC--ceEEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH---SLDG--RTVEAK 78 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~---~l~G--r~I~v~ 78 (456)
|+|||||+-|.+.-.|||++.+|..||+|++|.|++.. ++.+|||+||+|.+..+|..||...| .+-+ ..|.||
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 68999999999999999999999999999999999987 78999999999999999999998555 3444 568889
Q ss_pred ecchhHHHhhhccc------------------------------------------------------------CC----
Q 035855 79 RAMSREEQQFSARS------------------------------------------------------------GN---- 94 (456)
Q Consensus 79 ~a~~~~~~~~~~~~------------------------------------------------------------~~---- 94 (456)
+++..+|+...+.. .+
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 88776664322110 00
Q ss_pred ---C-----CCCCC------------------------------------C-----------------------------
Q 035855 95 ---T-----NSGRS------------------------------------N----------------------------- 101 (456)
Q Consensus 95 ---~-----~~~~~------------------------------------~----------------------------- 101 (456)
. ..++. +
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 00000 0
Q ss_pred ---------------------CCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 102 ---------------------GGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 102 ---------------------~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
-...-.+.+.|||-.||.+..+.||.+.|-.||.|+..+|..|+.|..+|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00001345789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CccCCcEEEEEEccCCCCCC
Q 035855 161 EDAVDRVLQKTF-HDLNGKQVEVKRALPKDANP 192 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~~ 192 (456)
..++++||..++ ..|.-|+|+|.+.+||+.++
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999998888 99999999999999998764
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.7e-22 Score=197.13 Aligned_cols=174 Identities=22% Similarity=0.486 Sum_probs=147.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~ 83 (456)
|+|||+.|++++.||.|+..|..||+|+.+.+-+|+.|.+.|+||||||+-+|.|.-|++ +...+.+|.|+|-+...-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999 455889999998654221
Q ss_pred HH-HhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 84 EE-QQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
.. ++..+.... ....-.+|||..++++++|+||+.+|+.||+|+.|.+.+++.+...|||+||||++..
T Consensus 194 pQAQpiID~vqe----------eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q 263 (544)
T KOG0124|consen 194 PQAQPIIDMVQE----------EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 263 (544)
T ss_pred cccchHHHHHHH----------HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc
Confidence 11 000000000 0013468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 163 AVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 163 aa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
+.+.|+..++ .+|.|.-|+|-++..++
T Consensus 264 s~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 264 SQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chHHHhhhcchhhcccceEecccccCCC
Confidence 9899988888 99999999998766544
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.2e-20 Score=192.86 Aligned_cols=152 Identities=24% Similarity=0.476 Sum_probs=137.7
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~Gr~I~v~~a~~~ 83 (456)
..|||+ ++|||+.|.++|+++++|+.++|++|. | +.|||||.|.++++|++||+.+ ..|.+++|++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 358999 899999999999999999999999999 7 9999999999999999999944 4799999999887422
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
. ..|||.||+++++..+|.++|+.||+|..|+|+.|.+- ++|| ||+|+++++
T Consensus 76 ~-------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 76 P-------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEES 127 (369)
T ss_pred C-------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHH
Confidence 1 12999999999999999999999999999999999874 9999 999999999
Q ss_pred HHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 164 VDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 164 a~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
|++||++++ ..+.+++|.|....++..+
T Consensus 128 a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred HHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999988 8899999999888876654
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=202.39 Aligned_cols=174 Identities=26% Similarity=0.457 Sum_probs=144.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTG---RPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAK 78 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg---~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~ 78 (456)
..++|||.||++++|.++|+.+|.+.|.|+.|.|...+... .+.||+||+|.++++|++|++. .+.|+++.|+|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34559999999999999999999999999999888765322 3569999999999999999995 578999999999
Q ss_pred ecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEe
Q 035855 79 RAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF 158 (456)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F 158 (456)
.+..+...+.... . .......+|+|+|||+.++..+|+++|..||.|..|+|++.......||||||+|
T Consensus 594 ~S~~k~~~~~gK~----~-------~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f 662 (725)
T KOG0110|consen 594 ISENKPASTVGKK----K-------SKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDF 662 (725)
T ss_pred eccCccccccccc----c-------ccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeec
Confidence 9872221111100 0 0011357999999999999999999999999999999998866677899999999
Q ss_pred CCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 159 DTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 159 ~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
-+++.+.+|++.+. ++|-||+|.++|+...
T Consensus 663 ~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 663 LTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred cCcHHHHHHHHhhcccceechhhheehhccc
Confidence 99999999998877 8999999999998754
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.5e-21 Score=181.26 Aligned_cols=139 Identities=24% Similarity=0.480 Sum_probs=118.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
.+.|||||+||+.+|||+-|..||++.|.|++|+|+.| .|.|.|+..
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWATA 50 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhccccccC
Confidence 55699999999999999999999999999999999986 244444443
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
...+.+. ......-|||..|..+++-|+||+.|.+||+|.+++|++|.+|.++|||+||.|.+.+
T Consensus 51 p~nQsk~---------------t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 51 PGNQSKP---------------TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred cccCCCC---------------ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 3111110 0113567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 163 AVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 163 aa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
+|+.||+.++ .-|..|.|+..||..|+
T Consensus 116 dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 116 DAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHHhCCeeeccceeeccccccCc
Confidence 9999998888 89999999999999887
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=2.4e-20 Score=185.90 Aligned_cols=186 Identities=20% Similarity=0.424 Sum_probs=150.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC---cCCC--ceEEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH---SLDG--RTVEAK 78 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~---~l~G--r~I~v~ 78 (456)
+++||||+-|++.+||.||+++|++||.|++|.|+++. .+.+||||||+|.++|.|..||+.+| ++.+ .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 57999999999999999999999999999999999987 78999999999999999999999443 5555 689999
Q ss_pred ecchhHHHhhhcc-------------------------------------------------------------------
Q 035855 79 RAMSREEQQFSAR------------------------------------------------------------------- 91 (456)
Q Consensus 79 ~a~~~~~~~~~~~------------------------------------------------------------------- 91 (456)
|++++++++.+..
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 9976654321110
Q ss_pred -----------cCCC-------C-----CC---------C--------C---------------C---------------
Q 035855 92 -----------SGNT-------N-----SG---------R--------S---------------N--------------- 101 (456)
Q Consensus 92 -----------~~~~-------~-----~~---------~--------~---------------~--------------- 101 (456)
.... . .. . . .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0000 0 00 0 0 0
Q ss_pred -------------------------------------------------------CCCCcccccEEEEcCCCCCCCHHHH
Q 035855 102 -------------------------------------------------------GGGGTIRTKKIFVGGLPPTLTEDGF 126 (456)
Q Consensus 102 -------------------------------------------------------~~~~~~~~~~LfV~nLp~~~teedL 126 (456)
....-...+.|||-+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 0000122346899999999999999
Q ss_pred HHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCC
Q 035855 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 127 ~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~ 190 (456)
...|..||.|+..++..|+.|+-+++|.||.||+..++.+||..++ ..|..++++|...+.+..
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999999999999999999999999999988888 999999999998876654
No 31
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.2e-19 Score=160.79 Aligned_cols=87 Identities=31% Similarity=0.639 Sum_probs=80.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
...++|||.|||+++||++|+++|++||+|++|+|++|+.|++++|||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999999998766 9999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
++++..++
T Consensus 112 ~~~~~~~~ 119 (144)
T PLN03134 112 NDRPSAPR 119 (144)
T ss_pred CcCCCCCC
Confidence 88766543
No 32
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.82 E-value=1.6e-19 Score=183.08 Aligned_cols=171 Identities=23% Similarity=0.448 Sum_probs=137.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+...|-+..|||++|++||++||+.+. |+++++.+ .+++..|-|||||+++|++++||+ +...+..|-|+|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 345688999999999999999999986 56655554 479999999999999999999999 56678889999988765
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEE-EeecCCCCCcceEEEEEeCCH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV-IMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~-i~~d~~tg~~rGfAFV~F~s~ 161 (456)
.+.....++.. ........+|-++.||+.||++||.++|+-.-.|.+.. ++.|+ ..++.|.|||.|++.
T Consensus 86 ~e~d~~~~~~g---------~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 86 AEADWVMRPGG---------PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQ 155 (510)
T ss_pred ccccccccCCC---------CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCH
Confidence 54422221110 11113567899999999999999999999887777644 44554 477999999999999
Q ss_pred HHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 162 DAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 162 eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
+++++||+++.+.|..|-|+|.++..
T Consensus 156 e~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 156 ESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred HHHHHHHHHHHHhhccceEEeehhHH
Confidence 99999999999999999999987653
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.82 E-value=1.3e-20 Score=193.15 Aligned_cols=181 Identities=25% Similarity=0.457 Sum_probs=150.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
|.|.+|||+--|+..+++.+|.+||+.+|.|.+|.|+.|+.+.++||.++|||.|.+.+..||. ....+.+.+|.|+..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 4678999999999999999999999999999999999999999999999999999999999887 566788888888765
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
.-.+.. ....... ........+-.+|+|+||+.+++|++|+.+|+.||.|+.|.+++|.+|++++||+||+|.+
T Consensus 256 Eaeknr-~a~~s~a-----~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 256 EAEKNR-AANASPA-----LQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred HHHHHH-HHhcccc-----ccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 433332 1111111 1111112233449999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 161 EDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
.+++++|++.++ .+|-|+.|+|.....+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeee
Confidence 999999988777 9999999999765543
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4.2e-18 Score=153.16 Aligned_cols=160 Identities=18% Similarity=0.328 Sum_probs=125.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..+++|||+|||.++.|.+|+++|.+|+.|.+|.+...+ ..-.||||+|+++.+|+.||. +...+++..|.|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457999999999999999999999999999998886543 345799999999999999998 778999999999988
Q ss_pred chhHHHhhhcccCC------CCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEE
Q 035855 81 MSREEQQFSARSGN------TNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFG 154 (456)
Q Consensus 81 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfA 154 (456)
..-.......-..+ ................+|.|+.||.+.+|+|||++..+-|.|....+.+|- ..
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ce
Confidence 64431110000000 000001112223455789999999999999999999999999999998873 79
Q ss_pred EEEeCCHHHHHHHHHHcC
Q 035855 155 FISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 155 FV~F~s~eaa~aal~~~~ 172 (456)
.|+|...|+++-|+.+++
T Consensus 154 vV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeehhhHHHHHHhhc
Confidence 999999999999988877
No 35
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=9e-19 Score=179.00 Aligned_cols=170 Identities=24% Similarity=0.474 Sum_probs=146.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a 80 (456)
.|...|||.||++++|..+|.++|+.||+|+.|+|+.+.. + ++|| ||+|+++++|++||+. ...+.+++|.|-..
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 4556699999999999999999999999999999999874 3 9999 9999999999999994 45788899999888
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
..++++...... . ......++|.+++.++++++|+++|.+++.|+.+.|+.+.. +++++|+||.|++
T Consensus 151 ~~~~er~~~~~~-~-----------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~ 217 (369)
T KOG0123|consen 151 ERKEEREAPLGE-Y-----------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFEN 217 (369)
T ss_pred cchhhhcccccc-h-----------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecC
Confidence 777766543322 1 12446799999999999999999999999999999999876 4589999999999
Q ss_pred HHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 161 EDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
.++++.|++.++ ..++++.+-|..+..+
T Consensus 218 ~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 218 PEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred hhHHHHHHHhccCCcCCccceeecccccc
Confidence 999999998888 7888899989887754
No 36
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.77 E-value=1.6e-17 Score=177.85 Aligned_cols=78 Identities=14% Similarity=0.444 Sum_probs=73.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|.++++|++||+ +..+|.++.|+|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 4799999999999999999999999999999999999999999999999999999999999 45588999999988764
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=4.8e-16 Score=144.72 Aligned_cols=174 Identities=17% Similarity=0.309 Sum_probs=131.3
Q ss_pred CcEEEEcCCCccCcHHHHHH----HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCCceEEEE
Q 035855 5 QGKLFIGGISWETSEERLRE----YFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDGRTVEAK 78 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e----~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~Gr~I~v~ 78 (456)
..||||.||+..+..++|+. +|++||.|++|++.+ +.+.||.|||+|.+.+.|..|++.+ ..+-++.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999998 999999999998877 5678999999999999999999944 46788889888
Q ss_pred ecchhHHHhhhccc-------------CC--CCCC---------------CCCCCCCcccccEEEEcCCCCCCCHHHHHH
Q 035855 79 RAMSREEQQFSARS-------------GN--TNSG---------------RSNGGGGTIRTKKIFVGGLPPTLTEDGFRQ 128 (456)
Q Consensus 79 ~a~~~~~~~~~~~~-------------~~--~~~~---------------~~~~~~~~~~~~~LfV~nLp~~~teedL~~ 128 (456)
.+..+...-...+. .. .+.. .........+...||+.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 87654432211000 00 0000 000023356788999999999999999999
Q ss_pred HHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC-CcEEEEEEcc
Q 035855 129 YFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN-GKQVEVKRAL 186 (456)
Q Consensus 129 ~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~-Gr~I~V~~a~ 186 (456)
+|++|.-.++|+++..+ ++.|||+|+++..+..|.+.+. ..|- ..+|.|.+++
T Consensus 166 lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988643 3489999999877777776665 3333 6677776653
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=4.4e-16 Score=155.56 Aligned_cols=185 Identities=21% Similarity=0.344 Sum_probs=141.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFS-QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~-~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
..+|.|||.|||+++.+++|+++|+ +.++|+-|.++.|. .+++||||.|||+++|.++||++ +++++.+|+|.||.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3467799999999999999999997 77999999999987 79999999999999999999999 78899999999976
Q ss_pred cchhHHHhhhcc---------------------------------c--CC--CCCCCC----------------------
Q 035855 80 AMSREEQQFSAR---------------------------------S--GN--TNSGRS---------------------- 100 (456)
Q Consensus 80 a~~~~~~~~~~~---------------------------------~--~~--~~~~~~---------------------- 100 (456)
....+..+.... . .. +.....
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 533211110000 0 00 000000
Q ss_pred ----C--CCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C
Q 035855 101 ----N--GGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H 173 (456)
Q Consensus 101 ----~--~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~ 173 (456)
. .....+...++||.||...+..+.|++.|..-|.|+.|.+-.|++ +.++|||.|+|+.+-.+..||.+++ .
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccC
Confidence 0 001133456899999999999999999999999999999999987 5899999999999766777777776 5
Q ss_pred ccCCcEEEEEEccCCC
Q 035855 174 DLNGKQVEVKRALPKD 189 (456)
Q Consensus 174 ~l~Gr~I~V~~a~~k~ 189 (456)
-+-.++..+....-.+
T Consensus 280 g~~~~~~~~Rl~~~~D 295 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRIPD 295 (608)
T ss_pred CCccccceeecccccc
Confidence 6667777776654433
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.69 E-value=1.1e-16 Score=143.38 Aligned_cols=81 Identities=41% Similarity=0.774 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++||++|+++|++|++|++|+|++++.++++|+||||+|+++++|++||+ +.++|+++.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346899999999999999999999999999999999999999999999999999999999998 457899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 643
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4.7e-17 Score=152.65 Aligned_cols=164 Identities=24% Similarity=0.449 Sum_probs=125.7
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~~ 83 (456)
.+|||++||+.+.+.+|++||..|+.|.+|.++. +|+||+|.|..+|+.|+.+ ..+|.+..+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999988865 6899999999999999983 44666666777766532
Q ss_pred HHHhhhcccCCCCCC-CCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 84 EEQQFSARSGNTNSG-RSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
.-.+...... .... ...........+.|+|.+|+..+.+++|+++|+++|.++.++++ +.++||+|++++
T Consensus 74 ~~~~g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~ 144 (216)
T KOG0106|consen 74 RRGRGRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQE 144 (216)
T ss_pred ccccCCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhh
Confidence 2211110000 0000 11122234566789999999999999999999999999666663 338999999999
Q ss_pred HHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 163 AVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 163 aa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
++++||+++. .+|.++.|+|....
T Consensus 145 da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 145 DAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhcchhccchhhcCceeeecccC
Confidence 9999999888 99999999994443
No 41
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=8.9e-17 Score=150.02 Aligned_cols=80 Identities=40% Similarity=0.828 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a~ 81 (456)
..-+||||++|+|++++|+|+++|++||+|++++|+.|+.++|+|||+||+|+|.|+|++|+++. ..|++|+..|+++.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 34589999999999999999999999999999999999999999999999999999999999965 58999999998875
Q ss_pred h
Q 035855 82 S 82 (456)
Q Consensus 82 ~ 82 (456)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=2.1e-15 Score=144.78 Aligned_cols=96 Identities=20% Similarity=0.332 Sum_probs=86.9
Q ss_pred CCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 103 GGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 103 ~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
.....+-++|||..|+.+++|.+|+++|++||.|+.|+|++|+.|++++|||||+|+++.++++|.+..+ +.|+++.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 3445788999999999999999999999999999999999999999999999999999999999998887 999999999
Q ss_pred EEEccCCCCCCCCCCCC
Q 035855 182 VKRALPKDANPGGGSRS 198 (456)
Q Consensus 182 V~~a~~k~~~~~g~~rg 198 (456)
|++...+..+.+-..+-
T Consensus 175 VDvERgRTvkgW~PRRL 191 (335)
T KOG0113|consen 175 VDVERGRTVKGWLPRRL 191 (335)
T ss_pred EEecccccccccccccc
Confidence 99998887776654443
No 43
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=4.6e-15 Score=156.35 Aligned_cols=181 Identities=18% Similarity=0.265 Sum_probs=129.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~ 79 (456)
+.+++.|+|+|||..+..++|.++|..|++|..+.+.. - + --++|+|.++.+|.+|++.+. .+....+.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~-~--G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP-G--G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCc-c--c---ceeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 35678999999999999999999999999998885432 1 1 148999999999999998332 34444454544
Q ss_pred cchhHHHhh------------------hcccCCCCCC------------CCCCCCCcccccEEEEcCCCCCCCHHHHHHH
Q 035855 80 AMSREEQQF------------------SARSGNTNSG------------RSNGGGGTIRTKKIFVGGLPPTLTEDGFRQY 129 (456)
Q Consensus 80 a~~~~~~~~------------------~~~~~~~~~~------------~~~~~~~~~~~~~LfV~nLp~~~teedL~~~ 129 (456)
+........ ..+....+.+ ...........++|||.||++++|.++|+.+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 432211100 0000000000 0000011222334999999999999999999
Q ss_pred HHhcCceeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 130 FEAYGHVTDVVIMYDQNTQ---RPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 130 F~~fG~V~~v~i~~d~~tg---~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
|.+.|.|..|.|.+.++.. .+.||+||+|.++++|++|++.+. +.|+|+.|+|+++..+
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK 598 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc
Confidence 9999999999887655422 245999999999999999999988 9999999999998843
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=4.6e-15 Score=142.10 Aligned_cols=146 Identities=23% Similarity=0.500 Sum_probs=113.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~ 82 (456)
.++|||+|||+++|+++|+++|.+|+.|..+.|+.++.++++++||||+|.++++|.+|++. ...|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999998999999999999999999999994 4589999999998643
Q ss_pred ----hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCc
Q 035855 83 ----REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP 150 (456)
Q Consensus 83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~ 150 (456)
+............................+++.+++..++++++..+|..++.+..+.+.........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIP 266 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCccc
Confidence 11111000000001111222333457788999999999999999999999999977777655544333
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=141.88 Aligned_cols=81 Identities=31% Similarity=0.625 Sum_probs=77.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
...+||||++|+|++++|+|+++|++||+|++++|+.|+.|+|+|||+||+|.|.|+|.+||+.-+..||||+..|++|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q 035855 187 P 187 (456)
Q Consensus 187 ~ 187 (456)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 46
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.2e-14 Score=148.71 Aligned_cols=173 Identities=25% Similarity=0.474 Sum_probs=129.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC--CCCcce---EEEEEeCCHHHHHHHHHcCCc--------
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT--TGRPRG---FGFVVFADPSILDRVLQDKHS-------- 69 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~--tg~srG---faFVeF~d~e~A~kAl~~~~~-------- 69 (456)
.-+++|||+.|||+++|++|...|..||.|+.-+-.+... --.++| |+|+.|+++.++.++|...++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 4578999999999999999999999999986555433222 224567 999999999999999874332
Q ss_pred -----CCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHH-hcCceeEEEEee
Q 035855 70 -----LDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFE-AYGHVTDVVIMY 143 (456)
Q Consensus 70 -----l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~-~fG~V~~v~i~~ 143 (456)
+..+.|+|..+......-.. .......+.+||||+.||.-+|.++|..+|+ .||.|..|-|-.
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~-----------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt 405 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVL-----------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT 405 (520)
T ss_pred EecCcccccceeEEeeEeccchhhh-----------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc
Confidence 22222333333222111111 1223345789999999999999999999998 699999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcCCccC----CcEEEEEEcc
Q 035855 144 DQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLN----GKQVEVKRAL 186 (456)
Q Consensus 144 d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~----Gr~I~V~~a~ 186 (456)
|++-+-+||-+-|+|.+..+-.+||.+...+|+ .|+|+|+.-.
T Consensus 406 D~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 406 DPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred CcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeeeeccee
Confidence 988889999999999999999999988775554 4677776533
No 47
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=3.5e-15 Score=151.72 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=77.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
....++|||.+||+++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ ++|.+++|+|++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 3467899999999999999999999999999999999999999999999999999999999998776 999999999999
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
+++.
T Consensus 184 a~p~ 187 (346)
T TIGR01659 184 ARPG 187 (346)
T ss_pred cccc
Confidence 8764
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.8e-15 Score=137.22 Aligned_cols=83 Identities=22% Similarity=0.436 Sum_probs=79.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.++.+|-|.||+.+++|+||++||.+||.|.+|.|.+|++|+.+||||||+|+++++|.+||+.++ +-++...|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 477889999999999999999999999999999999999999999999999999999999999888 9999999999999
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9873
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.58 E-value=1.1e-14 Score=149.99 Aligned_cols=175 Identities=19% Similarity=0.373 Sum_probs=129.6
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchhH
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~~ 84 (456)
+|||+||-+++||++|+.+|+.|+.|..|.+++|..|+++|||+||+|.+.++|++|++ +..+|.|+.|.|.....+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999999999999999999999999999988 4568999999885432221
Q ss_pred HHhhh--------------------------cc---cCC--CCC---------------------CCCCCCCC-------
Q 035855 85 EQQFS--------------------------AR---SGN--TNS---------------------GRSNGGGG------- 105 (456)
Q Consensus 85 ~~~~~--------------------------~~---~~~--~~~---------------------~~~~~~~~------- 105 (456)
..+.. .+ ... ..+ ........
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 11100 00 000 000 00000111
Q ss_pred cccccEEEEcCCC--CCCC--------HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Cc
Q 035855 106 TIRTKKIFVGGLP--PTLT--------EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HD 174 (456)
Q Consensus 106 ~~~~~~LfV~nLp--~~~t--------eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~ 174 (456)
.+++.+|.+.|+= .+.| +|||++.+.+||.|.+|.|.+. +-|+.||.|.++++|.+|+..++ ..
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhh
Confidence 1566677777773 2222 2788889999999988777432 23899999999999999998888 89
Q ss_pred cCCcEEEEEEcc
Q 035855 175 LNGKQVEVKRAL 186 (456)
Q Consensus 175 l~Gr~I~V~~a~ 186 (456)
|.++.|++++-.
T Consensus 515 F~gr~Ita~~~~ 526 (549)
T KOG0147|consen 515 FAGRMITAKYLP 526 (549)
T ss_pred hccceeEEEEee
Confidence 999999998743
No 50
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.56 E-value=1.9e-13 Score=133.75 Aligned_cols=177 Identities=15% Similarity=0.312 Sum_probs=130.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCce
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQ--------TVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRT 74 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~ 74 (456)
++.|||.+||.++|.+++.++|+++|.|.. |++.++. .++.||=+.|.|-..++++-|++ +...|.++.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456999999999999999999999998754 6676666 59999999999999999999998 556788999
Q ss_pred EEEEecchhHHHhh--hcc----------------cCCCCCCCCCCCCCcccccEEEEcCCC----CCCC-------HHH
Q 035855 75 VEAKRAMSREEQQF--SAR----------------SGNTNSGRSNGGGGTIRTKKIFVGGLP----PTLT-------EDG 125 (456)
Q Consensus 75 I~v~~a~~~~~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~LfV~nLp----~~~t-------eed 125 (456)
|.|+.|.-...... ..+ ..-.-.+...........++|.|.||= .+.+ ++|
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99987742211000 000 000000011112223456788888883 1223 467
Q ss_pred HHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 126 L~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
|++.+++||.|..|.|.- ..+.|.+.|.|.+.++|+.+|+.++ .-|++|+|+....-
T Consensus 293 l~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 788899999999998863 3467899999999999999999888 99999999987654
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.55 E-value=4.1e-13 Score=136.83 Aligned_cols=181 Identities=20% Similarity=0.282 Sum_probs=136.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
.+..|-+..||+.|||+||++||+-.-.|.+.+++....-+++.|-|||.|++.++|++||. +++.|..|-|+|.++..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 35789999999999999999999999888875544444467899999999999999999998 77889999999988866
Q ss_pred hHHHhhhcccC---------------C------------CCCCC---------------------------------CCC
Q 035855 83 REEQQFSARSG---------------N------------TNSGR---------------------------------SNG 102 (456)
Q Consensus 83 ~~~~~~~~~~~---------------~------------~~~~~---------------------------------~~~ 102 (456)
.+......... . .+..+ ...
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 55544331000 0 00000 000
Q ss_pred C--CC-----------cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 103 G--GG-----------TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 103 ~--~~-----------~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
. .+ ......++.+.||...++.+|..+|+..-.+ .|+|... .+++..|-|+|+|++.+++.+||.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhc
Confidence 0 00 1122568899999999999999999876544 4555443 348889999999999999999999
Q ss_pred HcCCccCCcEEEEEEcc
Q 035855 170 KTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 170 ~~~~~l~Gr~I~V~~a~ 186 (456)
+.+..+..+-|++....
T Consensus 340 kd~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 340 KDGANMGHRYVELFLNG 356 (510)
T ss_pred cCCcccCcceeeecccC
Confidence 99999999998887654
No 52
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=5.1e-14 Score=108.85 Aligned_cols=69 Identities=26% Similarity=0.816 Sum_probs=64.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
|||.|||+++|+++|+++|++||.|+.++++.+ .+++.+++|||+|+++++|++|++.++ +.|++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999999665 999999885
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=8.8e-14 Score=107.54 Aligned_cols=68 Identities=31% Similarity=0.748 Sum_probs=62.4
Q ss_pred EEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEE
Q 035855 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVE 76 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~ 76 (456)
|||+|||+++|+++|+++|++||+|..+.|+.+ .+++.+++|||+|+++++|++||+ +...+.++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 688999999999999999999999 45577777763
No 54
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=5.2e-14 Score=120.00 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+++||||+||+.-+|||+|.|+|+++|+|..|+|=-|+.+..++|||||+|.+.++|+.||+ +...|+.+.|.+.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 357999999999999999999999999999999999999999999999999999999999999 667899999999886
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.--
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.49 E-value=6.4e-13 Score=132.40 Aligned_cols=174 Identities=15% Similarity=0.298 Sum_probs=128.9
Q ss_pred CcEEEEcCCCcc-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 5 QGKLFIGGISWE-TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 5 ~r~LfVgnLP~~-vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
++.|.|.||-.+ +|+|.|..+|..||+|..|+|++.+.+ .|.|.+.|...|+-||+ +.++|.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 588999999876 899999999999999999999998754 79999999999999999 7889999999998887
Q ss_pred hhHHHhhhcccCC---------C------CCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCC
Q 035855 82 SREEQQFSARSGN---------T------NSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQN 146 (456)
Q Consensus 82 ~~~~~~~~~~~~~---------~------~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~ 146 (456)
....+.+..-... . .....+-.....++.+|++.|||.+++||||+++|.+-|-+.+......++
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd 451 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD 451 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC
Confidence 6544332211000 0 000111122346788999999999999999999999988654443322211
Q ss_pred CCCcceEEEEEeCCH-HHHHHHHHHcCCccCCc-EEEEEEccC
Q 035855 147 TQRPRGFGFISFDTE-DAVDRVLQKTFHDLNGK-QVEVKRALP 187 (456)
Q Consensus 147 tg~~rGfAFV~F~s~-eaa~aal~~~~~~l~Gr-~I~V~~a~~ 187 (456)
+-+|.+.++++ +++++.+.++++.+... .|+|.+++.
T Consensus 452 ----~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 452 ----RKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ----cceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 12899999985 55555556656777554 899988764
No 56
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.48 E-value=8.7e-14 Score=137.42 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=136.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCC----CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYG----DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G----~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
.--|.+.+||+++|+.++++||..-. .++.+.+++ +.+++..|-|||.|..+++|+.||. +...|.-|-|++.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34578899999999999999996432 334455554 4489999999999999999999998 56667778899988
Q ss_pred cchhHHHhhhcccCCCCCC-----------CCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc-eeE--EEEeecC
Q 035855 80 AMSREEQQFSARSGNTNSG-----------RSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VTD--VVIMYDQ 145 (456)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~~--v~i~~d~ 145 (456)
+...+.++...+....... +...........+|-+++||++++.|||.++|..|-. |+. |+++.+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 8777776655443221110 0111111223568999999999999999999999875 443 5665554
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcCC-ccCCcEEEEEEccCCC
Q 035855 146 NTQRPRGFGFISFDTEDAVDRVLQKTFH-DLNGKQVEVKRALPKD 189 (456)
Q Consensus 146 ~tg~~rGfAFV~F~s~eaa~aal~~~~~-~l~Gr~I~V~~a~~k~ 189 (456)
.+++.|.|||+|.++|++.+|..+.++ ..+.|-|+|..+.-.+
T Consensus 320 -qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 320 -QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred -CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 489999999999999999999888884 4458999998766443
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=143.46 Aligned_cols=182 Identities=18% Similarity=0.325 Sum_probs=136.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~ 81 (456)
..++|||++||..+++++++|+++.|++++...++.+..++.+++|||.+|+++.....|+.. ...+.+++|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999999999999999999999999999999999984 446777888887775
Q ss_pred hhHHHhhhcccCCCC----CCCCCCCCCcccccEEEEcCCC--CCC-CH-------HHHHHHHHhcCceeEEEEeecC--
Q 035855 82 SREEQQFSARSGNTN----SGRSNGGGGTIRTKKIFVGGLP--PTL-TE-------DGFRQYFEAYGHVTDVVIMYDQ-- 145 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~LfV~nLp--~~~-te-------edL~~~F~~fG~V~~v~i~~d~-- 145 (456)
............... ...........++++|++.|+= .++ .+ |+|+..+.+|+.|+.|+|.++-
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 544333222210010 0011112334566777766652 111 11 4566677899999999998772
Q ss_pred -CCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 146 -NTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 146 -~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
+.....|-.||+|.+.+++++|++.+. ..|.+++|...+-
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 223346789999999999999998888 9999999988763
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=7.6e-14 Score=118.99 Aligned_cols=80 Identities=19% Similarity=0.422 Sum_probs=75.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
.+++|||+||+..+|||+|.+||+++|+|+.|++-.|+.+..+.|||||+|-+.++|+.||+.++ ..|+.++|+|+|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56899999999999999999999999999999999999999999999999999999999998887 99999999999976
Q ss_pred C
Q 035855 187 P 187 (456)
Q Consensus 187 ~ 187 (456)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 4
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.4e-13 Score=130.94 Aligned_cols=77 Identities=13% Similarity=0.270 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
..++|||+|||+++||+||+++|+.||+|++|+|+.|++ .++||||+|+++++++.||.+++.+|.++.|+|+++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 357999999999999999999999999999999998864 46899999999999999998777999999999999874
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=1.7e-13 Score=106.78 Aligned_cols=69 Identities=28% Similarity=0.750 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
|||+|||++++++||+++|+.|+.|++|.+.++++ ++++++|||+|.++++|++|++.++ +.|++++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999999 899999985
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=133.85 Aligned_cols=83 Identities=25% Similarity=0.580 Sum_probs=75.4
Q ss_pred CCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 104 GGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 104 ~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
......++|+|+|||+...|.||+..|++||.|.+|+|+.+. .-+|||+||+|++.+++++|.++++ ..|+||+|||
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 334567899999999999999999999999999999998764 5689999999999999999999888 9999999999
Q ss_pred EEccCC
Q 035855 183 KRALPK 188 (456)
Q Consensus 183 ~~a~~k 188 (456)
..+..+
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998865
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=125.88 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=76.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.....|.|.||..-|+.++|+.+|++||.|-+|.|+.|+.|..++|||||.|.+..+|+.||+.++ ..|+++.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 355789999999999999999999999999999999999999999999999999999999999888 9999999999988
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
+-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 74
No 63
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.4e-13 Score=127.62 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.|+.+|-|.|||.+++|++|+|+|.+||.|..|.|.+|+.|+.+||||||.|.+.++|.+||+ +.+-++..-|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 367889999999999999999999999999999999999999999999999999999999999 566788888999999
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 764
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=2.7e-13 Score=105.58 Aligned_cols=68 Identities=34% Similarity=0.665 Sum_probs=61.0
Q ss_pred EEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEE
Q 035855 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVE 76 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~ 76 (456)
|||+|||+++|+++|+++|+.++.|.++.++.++. ++++++|||+|.++++|++|++. .++|.++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 89999999999999999999999999999999886 89999999999999999999993 3578888874
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=1.3e-12 Score=121.09 Aligned_cols=161 Identities=17% Similarity=0.299 Sum_probs=105.8
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHcC--CcCC---CceEEEE
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMRE-KTTGRPRGFGFVVFADPSILDRVLQDK--HSLD---GRTVEAK 78 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d-~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~---Gr~I~v~ 78 (456)
-|||||.+||.|+...||..+|+.|--.+.+.|... +....-+-++||+|.+..+|+.||+.. ..|+ ..+|.++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 699999999999999999999999977776666553 333344579999999999999999833 3332 3556665
Q ss_pred ecchhHHHhhhcccC--C-------------------------------------CCCCCC-------------------
Q 035855 79 RAMSREEQQFSARSG--N-------------------------------------TNSGRS------------------- 100 (456)
Q Consensus 79 ~a~~~~~~~~~~~~~--~-------------------------------------~~~~~~------------------- 100 (456)
.++........+... . .+..+.
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 554322111100000 0 000000
Q ss_pred --------CCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 101 --------NGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 101 --------~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
+.......+.+|||.||..++|||+|+.+|+.|--...++|... ..-..|||+|++.+.+..||.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHH
Confidence 00011123457999999999999999999999976666665321 112379999998776666664
No 66
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=6.9e-13 Score=118.94 Aligned_cols=78 Identities=22% Similarity=0.474 Sum_probs=69.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
-.++|||+||+..+++.||+.+|..||.|..|+|.+. +.|||||||++..+|+.|+..|+ ++|++.+|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999999754 46799999999888888888777 99999999999988
Q ss_pred CCCC
Q 035855 187 PKDA 190 (456)
Q Consensus 187 ~k~~ 190 (456)
-+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6654
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=7.1e-13 Score=114.02 Aligned_cols=88 Identities=20% Similarity=0.410 Sum_probs=81.5
Q ss_pred CCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 104 GGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 104 ~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
..++....|||+++.+++||+||.+.|..||+|++|.+..|+.|+-.||||+|+|++.+.|++|++.++ .+|-++.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 345677899999999999999999999999999999999999999999999999999999999998888 9999999999
Q ss_pred EEccCCCCC
Q 035855 183 KRALPKDAN 191 (456)
Q Consensus 183 ~~a~~k~~~ 191 (456)
+|+..+.+.
T Consensus 147 Dw~Fv~gp~ 155 (170)
T KOG0130|consen 147 DWCFVKGPE 155 (170)
T ss_pred EEEEecCCc
Confidence 998876553
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.8e-12 Score=127.48 Aligned_cols=179 Identities=14% Similarity=0.306 Sum_probs=130.7
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~ 83 (456)
.+|||..+-+|++|++|+..|+.||+|+.|.+.+++.....|||+||||.+..+...||. ++..|.++.|+|-++...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 689999999999999999999999999999999999999999999999999999999998 455788888888665322
Q ss_pred HHHhhhc--------------------------ccCC------------CC--------------------------CCC
Q 035855 84 EEQQFSA--------------------------RSGN------------TN--------------------------SGR 99 (456)
Q Consensus 84 ~~~~~~~--------------------------~~~~------------~~--------------------------~~~ 99 (456)
...-... ...+ .+ .++
T Consensus 291 P~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP 370 (544)
T KOG0124|consen 291 PDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTP 370 (544)
T ss_pred CchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCC
Confidence 2100000 0000 00 000
Q ss_pred CC------------------------------------------------------------------CCCCcccccEEE
Q 035855 100 SN------------------------------------------------------------------GGGGTIRTKKIF 113 (456)
Q Consensus 100 ~~------------------------------------------------------------------~~~~~~~~~~Lf 113 (456)
.. ......+++.|.
T Consensus 371 ~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~Viv 450 (544)
T KOG0124|consen 371 ARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIV 450 (544)
T ss_pred CCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEE
Confidence 00 000023456788
Q ss_pred EcCC--CCCCC---HHHHHHHHHhcCceeEEEEeecCCCCCc----ceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 114 VGGL--PPTLT---EDGFRQYFEAYGHVTDVVIMYDQNTQRP----RGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 114 V~nL--p~~~t---eedL~~~F~~fG~V~~v~i~~d~~tg~~----rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
++|+ |.+++ |.+|.+.+.+||.|.+|.|...+.+..- .=--||+|.....+.++++.++ ..|.|++|..+
T Consensus 451 LRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 451 LRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred EeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehh
Confidence 8887 44444 4678899999999999999987766522 1247999999888888888887 88899988664
Q ss_pred E
Q 035855 184 R 184 (456)
Q Consensus 184 ~ 184 (456)
.
T Consensus 531 ~ 531 (544)
T KOG0124|consen 531 V 531 (544)
T ss_pred h
Confidence 3
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=8.8e-13 Score=127.09 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
..++|||+|||+++||++|++||+.||+|++|.|+.++. .++||||+|.++++|++||. +...|.++.|+|.++..
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999998763 47899999999999999998 66789999999998754
Q ss_pred h
Q 035855 83 R 83 (456)
Q Consensus 83 ~ 83 (456)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 3
No 70
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.1e-12 Score=118.33 Aligned_cols=78 Identities=21% Similarity=0.460 Sum_probs=67.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
.+++|||.|||.++.|.||++||.+||.|.+|+|... ..+..||||+|++..+|+.||.-.+ .++++.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4688999999999999999999999999999998533 3445699999999888888887766 99999999999987
Q ss_pred CC
Q 035855 187 PK 188 (456)
Q Consensus 187 ~k 188 (456)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 53
No 71
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.1e-12 Score=132.05 Aligned_cols=80 Identities=25% Similarity=0.489 Sum_probs=73.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc-CCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL-NGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l-~Gr~I~V~~ 184 (456)
...+.|||+.||.++.|+||+.||++.|+|.+++||+|+.++..||||||+|.+.++|++||+.++ ++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 467889999999999999999999999999999999999999999999999999999999998887 777 578888876
Q ss_pred cc
Q 035855 185 AL 186 (456)
Q Consensus 185 a~ 186 (456)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 44
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=125.37 Aligned_cols=79 Identities=32% Similarity=0.745 Sum_probs=75.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
.++|||+|||.++|+++|+++|.+|+.|..|.|+.|+.+.+++|||||+|.++++++.|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6899999999999999999999999999999999999999999999999999999999999998 999999999999653
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.2e-12 Score=126.03 Aligned_cols=83 Identities=25% Similarity=0.547 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..-+||||.-|+.+++|.+|++.|++||+|+.|+|++++.|++++|||||||+++.+..+|.+ +..+|+++.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 445899999999999999999999999999999999999999999999999999999999998 567899999999776
Q ss_pred chhHH
Q 035855 81 MSREE 85 (456)
Q Consensus 81 ~~~~~ 85 (456)
..+..
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 54433
No 74
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.2e-12 Score=117.37 Aligned_cols=75 Identities=25% Similarity=0.519 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
-+++|||+||+..+++.||+.+|.+||+|..|+|-..+ -|||||||+|+.+|+.|+. +..+|++..|.|+...
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36899999999999999999999999999999998854 4899999999999999998 6678999999998775
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 43
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=2.9e-12 Score=121.70 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
...+|||.||++.+||+||+++|+.||+|++|+|++|.+ .++||||+|+++++++.||.+++.+|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 457999999999999999999999999999999998854 4579999999999999999988899999999998755
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=4.1e-12 Score=120.75 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
|.++-.+|||+||++.+||++|++||+.||+|.+|+|+++. +.++||||+|+++++|+.||. +...|.++.|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 77888999999999999999999999999999999999985 445799999999999999998 77889999999987
Q ss_pred cch
Q 035855 80 AMS 82 (456)
Q Consensus 80 a~~ 82 (456)
+..
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 654
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=1.1e-12 Score=135.89 Aligned_cols=80 Identities=34% Similarity=0.673 Sum_probs=75.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~~ 83 (456)
+.|||+|||++++||+|.++|+..+.|..++++.|+.|+++|||+||+|.+.++|++|++. ..++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999999999994 46899999999998765
Q ss_pred HH
Q 035855 84 EE 85 (456)
Q Consensus 84 ~~ 85 (456)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=5.2e-12 Score=96.49 Aligned_cols=71 Identities=30% Similarity=0.731 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
+|+|.+||.++++++|+++|++||.|++++++.++ +.++++|||+|.+.+++++|++.++ ..|++++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 6778999999999999999998888 89999999874
No 79
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=5.4e-12 Score=95.97 Aligned_cols=70 Identities=33% Similarity=0.792 Sum_probs=65.4
Q ss_pred EcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 114 VGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 114 V~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
|.+||.++++++|+++|++||.|.++.|..++.+.+++++|||+|.+.++|++|++.++ ..+++++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999998888999999999999999999999888 88999998873
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=4.3e-12 Score=128.92 Aligned_cols=77 Identities=19% Similarity=0.404 Sum_probs=69.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHHHcC-CccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE--DAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~--eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
....+|||+||++++|++||+++|.+||.|++|.|+ ++|+ ||||||+|.+. +++++||..++ .++.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 356889999999999999999999999999999999 4556 89999999875 67899998887 99999999999
Q ss_pred EccC
Q 035855 184 RALP 187 (456)
Q Consensus 184 ~a~~ 187 (456)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8874
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=8.7e-12 Score=95.26 Aligned_cols=69 Identities=28% Similarity=0.645 Sum_probs=62.1
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEE
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEA 77 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v 77 (456)
+|||.+||+++++++|+++|++|++|.++.++.++ +.++++|||+|.+.++|++|++ +...+.++.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 59999999999999999999999999999999876 6788999999999999999998 345677777765
No 82
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=123.48 Aligned_cols=174 Identities=13% Similarity=0.177 Sum_probs=123.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----cCCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ----DKHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~----~~~~l~Gr~I~v~ 78 (456)
..++.|.++|||||++|+||.+++..||.|.++.+++-++ .|||||+|+++|...+. -...+.+++|.+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4678899999999999999999999999999999988664 79999999999988655 2335777888877
Q ss_pred ecchhHHHhhhcc----------------cCCCCCCC--C--CCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeE
Q 035855 79 RAMSREEQQFSAR----------------SGNTNSGR--S--NGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD 138 (456)
Q Consensus 79 ~a~~~~~~~~~~~----------------~~~~~~~~--~--~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~ 138 (456)
++..++....... ....+... . .......+.-+++|.++-..++-|-|.++|++||.|.+
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlK 179 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLK 179 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEE
Confidence 6654332211110 00000000 0 11112234557899999999999999999999999998
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC--cEEEEEEcc
Q 035855 139 VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG--KQVEVKRAL 186 (456)
Q Consensus 139 v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G--r~I~V~~a~ 186 (456)
|.-......- .|.|.|.+.+.|+.|...++ ..|-. ..|+|++++
T Consensus 180 IiTF~Knn~F----QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 180 IITFTKNNGF----QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred EEEEecccch----hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 8766443321 49999999888888876666 55543 345555544
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.8e-12 Score=119.94 Aligned_cols=84 Identities=27% Similarity=0.583 Sum_probs=78.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||+.|..++||.-|...|-.||.|++|.|+.|.++++.|+|+||+|+..|+|.+||..++ .+|-||+|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 466899999999999999999999999999999999999999999999999999888888888777 9999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
+|..-
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98643
No 84
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=4.3e-12 Score=132.24 Aligned_cols=181 Identities=23% Similarity=0.383 Sum_probs=137.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY------------GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHS 69 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~------------G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~ 69 (456)
...++++|++||+.++|+++..+|..- -.|+.|.|-..+ .||||+|.+.++|..++. +...
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~~~~~~ 246 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMALDGII 246 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhcccchh
Confidence 456899999999999999999999854 225555554443 599999999999999998 4556
Q ss_pred CCCceEEEEecchhHHHhhhcccCC---CCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCC
Q 035855 70 LDGRTVEAKRAMSREEQQFSARSGN---TNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQN 146 (456)
Q Consensus 70 l~Gr~I~v~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~ 146 (456)
+.++.+.+................. .-..............+|||++||..+++++++|+.+.|+.++...+++|..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 7777776654432221111111110 0111122233345678899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 147 TQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 147 tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
++.+++|||.+|.+....+.|++-++ +.+.+++|.|..|....
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999988889998888 89999999999887543
No 85
>PLN03213 repressor of silencing 3; Provisional
Probab=99.29 E-value=2.3e-11 Score=123.71 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH--HHHHHHHH--cCCcCCCceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADP--SILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~--e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
...+|||+||+++||+++|+++|..||.|..|.|+++ ++ ||||||+|.+. +++++||+ +..+|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3578999999999999999999999999999999944 55 89999999987 68999999 66799999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+++..
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 97643
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.8e-11 Score=92.94 Aligned_cols=73 Identities=34% Similarity=0.778 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
+|+|.+||..+++++|+++|+.|+.|.++.++.++.+ .++++|||+|.+.++++.|++.++ ..+++++|+|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988776 778999999999999999999888 669999999864
No 87
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.28 E-value=2.4e-12 Score=128.08 Aligned_cols=87 Identities=44% Similarity=0.792 Sum_probs=82.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
..++|||+.|+|+++||.|++.|.+||+|.+|.||+|+.+.++|+|.||+|++++.+.++|....++|+++.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCCC
Q 035855 188 KDANPGG 194 (456)
Q Consensus 188 k~~~~~g 194 (456)
++.....
T Consensus 85 r~~~~~~ 91 (311)
T KOG4205|consen 85 REDQTKV 91 (311)
T ss_pred ccccccc
Confidence 8866443
No 88
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.8e-11 Score=93.11 Aligned_cols=68 Identities=34% Similarity=0.693 Sum_probs=61.9
Q ss_pred EcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEE
Q 035855 10 IGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEA 77 (456)
Q Consensus 10 VgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v 77 (456)
|.+||+++++++|+++|++||+|.++.|+.++.+++++++|||+|.+.++|++|++. ...+.++.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 679999999999999999999999999999888899999999999999999999984 35677888776
No 89
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=8.5e-12 Score=121.55 Aligned_cols=78 Identities=28% Similarity=0.602 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a~ 81 (456)
..++|+|.|||+..-|.||+.+|++||.|++|.|+... .-+|||+||+|++.+||++|.++.| .|+||+|||..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 35899999999999999999999999999999999864 4589999999999999999999665 7999999999987
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 66
No 90
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.25 E-value=6.3e-11 Score=119.09 Aligned_cols=81 Identities=22% Similarity=0.491 Sum_probs=73.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
..+.+||+|||+++.|+|||+|| ++.|+|+.|+++.|.. +++||+|.|||+++|.+++|+++++ +++++|+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45669999999999999999999 5689999999999975 8999999999999999999999999 9999999999987
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
...+
T Consensus 122 ~d~q 125 (608)
T KOG4212|consen 122 HDEQ 125 (608)
T ss_pred Cchh
Confidence 6533
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=6.4e-11 Score=97.69 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=71.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..-++.|||.|||.++|.|++.++|.+||.|..|+|-.+++| +|.|||.|++..+|++|++.+. ..++++.|.|-+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 345688999999999999999999999999999999877665 8899999999999999998887 899999999976
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
-.+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 5543
No 92
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=110.19 Aligned_cols=80 Identities=28% Similarity=0.485 Sum_probs=76.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
...+|||+||+..++++.|.++|-+.|+|.+|+|++|+.|...+|||||+|.+||+|+=|++.++ ..|-+|+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 56899999999999999999999999999999999999999999999999999999999999998 88999999999988
Q ss_pred C
Q 035855 187 P 187 (456)
Q Consensus 187 ~ 187 (456)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.4e-12 Score=117.50 Aligned_cols=78 Identities=28% Similarity=0.611 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a 80 (456)
.|+--|||++||+++||.+|..+|++||+|++|.+++|+.|++++||||+.|+|..+..-|+.+ ..+|.+|+|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3567799999999999999999999999999999999999999999999999999999999884 55899999999765
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.22 E-value=1.3e-11 Score=113.36 Aligned_cols=77 Identities=32% Similarity=0.537 Sum_probs=72.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
-.+|.|-||-+.||.++|+.+|++||.|-+|.|.+|+.|..++|||||.|.++.+|+.||+ +..+|+++.|.|+.+.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4679999999999999999999999999999999999999999999999999999999999 6678999999887663
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1e-10 Score=89.73 Aligned_cols=71 Identities=35% Similarity=0.689 Sum_probs=63.4
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEE
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAK 78 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~ 78 (456)
+|+|.+||+++++++|+++|+.+++|..+.++.++.+ +++++|||+|.+.++|..|++. ...+++++|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988755 7789999999999999999984 345788888775
No 96
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.20 E-value=1.4e-11 Score=122.02 Aligned_cols=181 Identities=20% Similarity=0.297 Sum_probs=142.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~ 81 (456)
..+++||+++.+.+.+.++..+|.+.+.+..+.+......-.+++++.|.|+..+.+..+|.. .+.+..+.++.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 468899999999999999999999999999998888777889999999999999999999983 235555666554443
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
....+..... ...........++|.+|+..+++++|+.+|..++.|..|+++.++.+..+++|++|+|.+.
T Consensus 167 ~~~~~~~n~~---------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~ 237 (285)
T KOG4210|consen 167 RRGLRPKNKL---------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAG 237 (285)
T ss_pred cccccccchh---------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhc
Confidence 3331111000 0011112233445999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHcCCccCCcEEEEEEccCCCCCCC
Q 035855 162 DAVDRVLQKTFHDLNGKQVEVKRALPKDANPG 193 (456)
Q Consensus 162 eaa~aal~~~~~~l~Gr~I~V~~a~~k~~~~~ 193 (456)
+..+.++......+.++++.|++..+++....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (285)
T KOG4210|consen 238 NSKKLALNDQTRSIGGRPLRLEEDEPRPKSDG 269 (285)
T ss_pred hhHHHHhhcccCcccCcccccccCCCCccccc
Confidence 77777776644889999999999888765533
No 97
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.18 E-value=1.8e-10 Score=118.82 Aligned_cols=82 Identities=23% Similarity=0.458 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
..|||.|||.++++++|+++|.+||.|++..|.......+..+|+||+|++.++++.||+.....|++++|.|+..++..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999998765533333489999999999999999999999999999999988755
Q ss_pred CC
Q 035855 190 AN 191 (456)
Q Consensus 190 ~~ 191 (456)
+.
T Consensus 369 ~g 370 (419)
T KOG0116|consen 369 RG 370 (419)
T ss_pred cc
Confidence 44
No 98
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=95.14 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~Gr~I~v~~a~ 81 (456)
.++-|||.|||+++|.|++.++|-+||.|.+|+|=.++. -+|.|||.|++..+|++|++++ ..++.+.|.|-...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 357799999999999999999999999999999977654 4799999999999999999954 57888999988776
Q ss_pred hhHHH
Q 035855 82 SREEQ 86 (456)
Q Consensus 82 ~~~~~ 86 (456)
+....
T Consensus 94 ~~~~~ 98 (124)
T KOG0114|consen 94 PEDAF 98 (124)
T ss_pred HHHHH
Confidence 55444
No 99
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=3.9e-12 Score=114.71 Aligned_cols=78 Identities=26% Similarity=0.549 Sum_probs=68.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH-HHHHHHHHHcCCccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE-DAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~-eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
++.-|||++||.++||.||..+|++||+|++|.+++|+.|++++||||+.|++. ..+.|+-.+++..|.+|.|+|+..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 456799999999999999999999999999999999999999999999999985 444445555559999999999864
No 100
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.8e-11 Score=117.18 Aligned_cols=82 Identities=17% Similarity=0.360 Sum_probs=75.4
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
..++..+|||-.|.+-+|+|||+-+|++||.|..|.|++|+.|+.+..||||+|++.+++++|.-+++ ..|+.++|.|+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34688999999999999999999999999999999999999999999999999999999988865555 99999999999
Q ss_pred Ecc
Q 035855 184 RAL 186 (456)
Q Consensus 184 ~a~ 186 (456)
++.
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 865
No 101
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.9e-11 Score=113.13 Aligned_cols=86 Identities=26% Similarity=0.482 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~ 78 (456)
|..+.|+|||+.|..+|||..|...|-.||.|++|.|..|..+.+.|+|+||+|...|+|..||.++. +|.+|+|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999654 8999999999
Q ss_pred ecchhHHH
Q 035855 79 RAMSREEQ 86 (456)
Q Consensus 79 ~a~~~~~~ 86 (456)
.+++.+.+
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99775543
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.16 E-value=6.5e-11 Score=122.74 Aligned_cols=81 Identities=28% Similarity=0.618 Sum_probs=77.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
..|||+|||++++||+|.++|+..|.|..++++.|++|+++|||+||+|.++++++.|++.++ .++.+++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999999998 9999999999998765
Q ss_pred CC
Q 035855 189 DA 190 (456)
Q Consensus 189 ~~ 190 (456)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 103
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.15 E-value=4.4e-11 Score=114.93 Aligned_cols=71 Identities=30% Similarity=0.617 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
.+|||+|||.++++.+|+.||++||+|++|+|+++ |+||+.|++.+++.||..++ .+|++..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 99999999999999998665 8999999999998887
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.13 E-value=6e-10 Score=110.25 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=122.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----cCCcCCCceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ----DKHSLDGRTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~----~~~~l~Gr~I~v~~a 80 (456)
+-.|.|.+|-..++|.+|.|.++.||+|.-+.+|-.+ -.+.|||+|.+.|+.++. +...+.++...+..+
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 4578999999999999999999999999888777654 379999999999999986 444566666555555
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEc--CCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEe
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVG--GLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF 158 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~--nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F 158 (456)
..+....+- .....+.+.|.++ |--..+|.|-|..++...|.|.+|.|++..- - .|.|||
T Consensus 105 tsq~i~R~g-------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng--V---QAmVEF 166 (494)
T KOG1456|consen 105 TSQCIERPG-------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG--V---QAMVEF 166 (494)
T ss_pred hhhhhccCC-------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc--e---eeEEee
Confidence 333222111 1111244555444 5557799999999999999999999997632 2 699999
Q ss_pred CCHHHHHHHHHHcC-Ccc--CCcEEEEEEccCCC
Q 035855 159 DTEDAVDRVLQKTF-HDL--NGKQVEVKRALPKD 189 (456)
Q Consensus 159 ~s~eaa~aal~~~~-~~l--~Gr~I~V~~a~~k~ 189 (456)
++.++|++|.+.++ .+| .-.+|+|++|+|.+
T Consensus 167 dsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 167 DSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred chhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 99999999998887 555 34688999998754
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.12 E-value=2.5e-09 Score=105.92 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=127.4
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISWE-TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~-vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
+.+.+.|-+|... ++-+.|..+|..||.|+.|++|+.+. +.|+||+.|..++++||. +...+.+.+|+|+.+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4578999999876 67899999999999999999999874 789999999999999999 455788999999877
Q ss_pred chhHHHhhhc------------cc--CCC---CCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc-eeEEEEe
Q 035855 81 MSREEQQFSA------------RS--GNT---NSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VTDVVIM 142 (456)
Q Consensus 81 ~~~~~~~~~~------------~~--~~~---~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~i~ 142 (456)
+......... .+ .+. ....+.......++++|+.-|.|..+|||.|.++|..... .+.|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 5432211100 00 000 0011122233568899999999999999999999977653 4556666
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCc------EEEEEEccCC
Q 035855 143 YDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGK------QVEVKRALPK 188 (456)
Q Consensus 143 ~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr------~I~V~~a~~k 188 (456)
.-+....+ -+.+||++.++|..||.+++ ..|++. .|++.++.++
T Consensus 441 p~kserSs--sGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 441 PLKSERSS--SGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred cccccccc--cceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 55533323 57999999877777777766 556553 3555555554
No 106
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=2.3e-10 Score=113.49 Aligned_cols=179 Identities=21% Similarity=0.307 Sum_probs=130.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.++..|....|||..++.+|..||+-.-.+.-.+++.....++..+.+.|.|.|+|.-+.|++ ++|.+..+.|+|-++.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 455667889999999999999999977655555555555577888999999999999999998 7888889999998776
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc----eeEEEEeecCCCCCcceEEEEE
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH----VTDVVIMYDQNTQRPRGFGFIS 157 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~----V~~v~i~~d~~tg~~rGfAFV~ 157 (456)
..+--....-..+... ........-.|-+++||+++|+.|+.++|...-. ++.|-+++ +.++++.|-|||.
T Consensus 138 ge~f~~iagg~s~e~~----~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~-rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAA----PFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT-RPDGRPTGDAFVL 212 (508)
T ss_pred chhheEecCCccccCC----CCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE-CCCCCcccceEEE
Confidence 5443222111111000 0000112345677899999999999999964333 33444444 4458999999999
Q ss_pred eCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 158 FDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 158 F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
|..+++|+.||.++...|.-|-|+|.++.
T Consensus 213 fa~ee~aq~aL~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQNIGQRYIELFRST 241 (508)
T ss_pred ecCHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999877877778875543
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=3.1e-10 Score=88.95 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=53.8
Q ss_pred HHHHHHHHH----hcCceeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 123 EDGFRQYFE----AYGHVTDVV-IMYDQNT--QRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 123 eedL~~~F~----~fG~V~~v~-i~~d~~t--g~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
++||+++|+ +||.|.+|. |+.++.+ ++++||+||+|+++++|++|++.++ +.|++++|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999996 7777777 8999999999999999999998877 9999999986
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.9e-11 Score=111.98 Aligned_cols=132 Identities=24% Similarity=0.346 Sum_probs=106.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..++||||.||...|+||-|.|+|-+.|+|.+++|..++ +.+.| ||||+|+++.++.-|++ +..++.++.|.+++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 457999999999999999999999999999999998887 56666 99999999999999988 455666666654322
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcC----CCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEE
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGG----LPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~n----Lp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV 156 (456)
.++ |...++++.+.+.|+.-+.|+.+++..+.+ ++.+-+.||
T Consensus 85 ---------------------------------~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~ 130 (267)
T KOG4454|consen 85 ---------------------------------CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFV 130 (267)
T ss_pred ---------------------------------cCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccch
Confidence 222 456688999999999999999999998877 788889999
Q ss_pred EeCCHHHHHHHHHH
Q 035855 157 SFDTEDAVDRVLQK 170 (456)
Q Consensus 157 ~F~s~eaa~aal~~ 170 (456)
++-...+.-.++..
T Consensus 131 ~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 131 TYQRLCAVPFALDL 144 (267)
T ss_pred hhhhhhcCcHHhhh
Confidence 98654444444443
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.6e-10 Score=98.31 Aligned_cols=78 Identities=19% Similarity=0.418 Sum_probs=72.9
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCCceEEEEecchhH
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~Gr~I~v~~a~~~~ 84 (456)
.|||.+|-.++|||+|.+.|..||+|+++.+--|+.|+-.||||+|+|++.++|.+||+.+ .+|.++.|.|.|+..+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999944 58999999999987554
No 110
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.1e-11 Score=133.33 Aligned_cols=151 Identities=23% Similarity=0.316 Sum_probs=126.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a~~ 82 (456)
+..++||.||+..+.+++|.+.|..++.|..+.|...+..++.||.|+|+|.+++++.+||... ..+.+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 3568999999999999999999999999998888877889999999999999999999999721 11221
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTED 162 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~e 162 (456)
..+|||.++|+..|.++|+.+|..++.+++++++..+. ++++|.|||.|+++.
T Consensus 736 --------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 736 --------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEA 788 (881)
T ss_pred --------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcc
Confidence 25699999999999999999999999999999877665 899999999999988
Q ss_pred HHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 163 AVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 163 aa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
++.+++...+ ..++-+.++|....|..++
T Consensus 789 ~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 789 DASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred hhhhhcccchhhhhhhcCccccccCCcccc
Confidence 8877776665 6677777777776554333
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=1.2e-09 Score=81.60 Aligned_cols=55 Identities=24% Similarity=0.596 Sum_probs=48.6
Q ss_pred HHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 126 FRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 126 L~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
|+++|++||+|++|.+..++ +++|||+|++.++|++|++.++ ..|++++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998664 4699999999999999998777 8999999999985
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=4.5e-10 Score=106.32 Aligned_cols=170 Identities=18% Similarity=0.312 Sum_probs=124.1
Q ss_pred CcEEEEcCCCccCcHHH-H--HHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEe
Q 035855 5 QGKLFIGGISWETSEER-L--REYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKR 79 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~-L--~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~ 79 (456)
.-.+|+.++-.++..+- | ...|+.+-.+.+.+++++. ...-+.++|+.|.....-.++-.+ +.++..+.|++-.
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 34567777777777665 4 6788888878888888776 456678999999876655555442 2233333333322
Q ss_pred cchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC
Q 035855 80 AMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD 159 (456)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~ 159 (456)
....++.... .-.....+||.+.|..+++++.|.+.|.+|-.....++++|+.|++++||.||.|.
T Consensus 175 gtswedPsl~--------------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 175 GTSWEDPSLA--------------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccccCCcccc--------------cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 2222211111 11235678999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 160 TEDAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 160 s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
+..++..|+..++ +-++.+.|++....-++
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 9999999988777 88899998886654443
No 113
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=3.7e-09 Score=82.76 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=50.8
Q ss_pred HHHHHHHHh----cCCCeeEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEE
Q 035855 19 EERLREYFS----QYGDVLQTV-VMREKTT--GRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEA 77 (456)
Q Consensus 19 ee~L~e~F~----~~G~V~~v~-i~~d~~t--g~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v 77 (456)
+++|+++|+ +||.|.++. |+.++.+ +++|||+||+|.+.++|++||+ +...++++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999996 6666666 8999999999999999999999 455788888865
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=2.9e-09 Score=113.84 Aligned_cols=82 Identities=24% Similarity=0.554 Sum_probs=72.9
Q ss_pred CCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 104 GGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 104 ~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
...+.++||||+.|+..++|+||+.+|+.||+|..|+++. +|++|||++..+++|.+||.++. +.|..+.|+|
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 3456778999999999999999999999999999999964 46799999999999999998887 8999999999
Q ss_pred EEccCCCCC
Q 035855 183 KRALPKDAN 191 (456)
Q Consensus 183 ~~a~~k~~~ 191 (456)
.|+..+..+
T Consensus 490 ~Wa~g~G~k 498 (894)
T KOG0132|consen 490 AWAVGKGPK 498 (894)
T ss_pred eeeccCCcc
Confidence 999876543
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.89 E-value=2.5e-09 Score=114.28 Aligned_cols=76 Identities=21% Similarity=0.512 Sum_probs=68.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
+|||||+.|++.|+|++|..+|+.||+|..|+++. +|+||||++...++|++||. +.+++..++|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 58999999999999999999999999999998876 45899999999999999998 56789999999999976
Q ss_pred hHHH
Q 035855 83 REEQ 86 (456)
Q Consensus 83 ~~~~ 86 (456)
+-.+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 5443
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=6.4e-09 Score=102.44 Aligned_cols=76 Identities=28% Similarity=0.589 Sum_probs=67.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC--CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF--HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~--~~l~Gr~I~V~~ 184 (456)
..-++|||++|-..++|.||+++|.+||+|+.|+++..+. +|||+|.++++|+.|.++.. ..|+|++|+|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~------CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG------CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc------cceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 4557899999999999999999999999999999986643 89999999999988877665 788999999999
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
..++
T Consensus 300 g~~~ 303 (377)
T KOG0153|consen 300 GRPK 303 (377)
T ss_pred CCCc
Confidence 9883
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=4.3e-09 Score=103.66 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
|.+.+..|||-.|.+-+|+|+|.-+|+.||.|+.|.|++|..|+.+.-||||||++.++.++|.- +..-|+.+.|-|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 45678899999999999999999999999999999999999999999999999999999999976 4557899999998
Q ss_pred ecchhHH
Q 035855 79 RAMSREE 85 (456)
Q Consensus 79 ~a~~~~~ 85 (456)
++.+...
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 8766544
No 118
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=2.9e-09 Score=101.41 Aligned_cols=81 Identities=20% Similarity=0.424 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a 80 (456)
+|-|.|||-.||.+..+.||.++|-.||.|+..+|..|+.|+.+|.|+||.|+++.+|..||..++ .|.-|+|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 578999999999999999999999999999999999999999999999999999999999999544 566677776555
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 363 RPk 365 (371)
T KOG0146|consen 363 RPK 365 (371)
T ss_pred Ccc
Confidence 443
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.82 E-value=1.2e-08 Score=75.97 Aligned_cols=54 Identities=30% Similarity=0.623 Sum_probs=47.5
Q ss_pred HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 22 LREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 22 L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
|+++|++||+|++++++.++ +++|||+|.+.++|++|++ +...+.+++|.|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998765 5799999999999999999 566899999999875
No 120
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.78 E-value=2.1e-08 Score=93.95 Aligned_cols=80 Identities=19% Similarity=0.435 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCCHHHHHH----HHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQ----YFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~----~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
+..+|||.||.+.+..++|++ +|++||.|.+|...+ |.+.||.|||+|++.++|.+|+..+. .-|-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 455999999999999999998 999999999999874 46789999999999999999888777 8899999999
Q ss_pred EEccCCCC
Q 035855 183 KRALPKDA 190 (456)
Q Consensus 183 ~~a~~k~~ 190 (456)
.+|+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99887653
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.77 E-value=2.3e-08 Score=92.39 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=72.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhc-CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAY-GHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~f-G~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.....++|..||.-+.+.+|..+|.+| |.|+++++-+.+.|+.++|||||+|+++|.|+-|.+.++ ..|.++.|+|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 455679999999999999999999998 788888888999999999999999999999888877666 888999999987
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.72 E-value=1.1e-07 Score=91.55 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.-..+|+|.|||..|++++|+|+|++|++++.+.|.+++ .+++.|.|-|.|...++|++||+ +...++++.|.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 445789999999999999999999999999888888887 89999999999999999999999 556789998888665
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 443
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=2.8e-08 Score=97.95 Aligned_cols=74 Identities=26% Similarity=0.504 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ---DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~---~~~~l~Gr~I~v~~ 79 (456)
..-++|||++|-.+++|.+|+++|.+||+|..++++..+ ++|||+|.+.++|++|.+ +...|++++|.|+|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 445899999998899999999999999999999998765 599999999999999998 55578999999999
Q ss_pred cch
Q 035855 80 AMS 82 (456)
Q Consensus 80 a~~ 82 (456)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 987
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.67 E-value=7.2e-08 Score=92.85 Aligned_cols=83 Identities=23% Similarity=0.466 Sum_probs=73.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
+....+|.|.|||..|+++||++||++|++++.+.|-.|+. +++.|.|-|+|+..++|.+|++..+ ..|+++.|++..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34557899999999999999999999999999999988875 8899999999999989999988887 999999999988
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
..+..
T Consensus 159 i~~~~ 163 (243)
T KOG0533|consen 159 ISSPS 163 (243)
T ss_pred ecCcc
Confidence 76544
No 125
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.67 E-value=2.5e-08 Score=95.94 Aligned_cols=83 Identities=19% Similarity=0.387 Sum_probs=78.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.+.+||+|+...+|.++|+.+|+.|+.|..|.|++|+.++.+|+|+||+|++.+.++.+++++..+|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 46778999999999999999999999999999999999999989999999999999999999997779999999999987
Q ss_pred cCC
Q 035855 186 LPK 188 (456)
Q Consensus 186 ~~k 188 (456)
+.+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 766
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=1.2e-07 Score=87.71 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=68.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEec
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY-GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~-G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a 80 (456)
...-++|..||.-+.|.+|..+|.+| |.|..+++-+.+.|+.+|+||||+|+++++|+.|-+.++ -|.++.|+|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999999 677777777999999999999999999999999999554 577788888766
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 544
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.65 E-value=4.1e-08 Score=103.84 Aligned_cols=184 Identities=14% Similarity=0.047 Sum_probs=121.6
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC-cCCCceEEEEe
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH-SLDGRTVEAKR 79 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~-~l~Gr~I~v~~ 79 (456)
|.+|++.|-+..+++.+++.++++||.-. .|..+.|.++.-.....|-++|+|....++.+|++... .+-.|.|++..
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGP 385 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecC
Confidence 34688999999999999999999999743 23344444444333336899999999999999998443 44456676644
Q ss_pred cchhHHHhhhc---------------ccCCCCC----CCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEE
Q 035855 80 AMSREEQQFSA---------------RSGNTNS----GRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140 (456)
Q Consensus 80 a~~~~~~~~~~---------------~~~~~~~----~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~ 140 (456)
+-...-..... ....... ..+..........+|||..||..+++.++.++|...-.|++.+
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 32211100000 0000000 0011112234567899999999999999999999888888854
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHH-HHcCCccCCcEEEEEEc
Q 035855 141 IMYDQNTQRPRGFGFISFDTEDAVDRVL-QKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 141 i~~d~~tg~~rGfAFV~F~s~eaa~aal-~~~~~~l~Gr~I~V~~a 185 (456)
.+.-..+.+.+..|||+|..++++.+|+ .+..+-+..+.|+|+-.
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 4444456778889999999866555554 44446677778888643
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=1.6e-08 Score=109.86 Aligned_cols=158 Identities=16% Similarity=0.283 Sum_probs=118.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a 80 (456)
.+++|||++||+..+++.+|+..|..+|.|.+|.|-..+ .+.-.-|+||.|.+.+.+-+++.+.. .|..-.+.+...
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 357899999999999999999999999999999887653 34455689999998887766654221 111111111111
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
.. ....++.|+|..|...+....|...|..||.|..|.+-+... ||+|.+++
T Consensus 449 ~~----------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~------yayi~yes 500 (975)
T KOG0112|consen 449 QP----------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP------YAYIQYES 500 (975)
T ss_pred cc----------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc------ceeeeccc
Confidence 00 124678999999999999999999999999999988854332 99999999
Q ss_pred HHHHHHHHHHcC-CccC--CcEEEEEEccCCC
Q 035855 161 EDAVDRVLQKTF-HDLN--GKQVEVKRALPKD 189 (456)
Q Consensus 161 ~eaa~aal~~~~-~~l~--Gr~I~V~~a~~k~ 189 (456)
..++++|++.+. .-|. .++|.|.++.+..
T Consensus 501 ~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 501 PPAAQAATHDMRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred CccchhhHHHHhcCcCCCCCcccccccccCCC
Confidence 988888887665 4443 3678898887543
No 129
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.62 E-value=6.7e-08 Score=99.98 Aligned_cols=76 Identities=18% Similarity=0.421 Sum_probs=65.8
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
-.+|||.|||.++++++|+++|++||+|++..|.......+...|+||+|.+.++++.+|+ ....|.+++|.|+..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 4569999999999999999999999999999988865344444899999999999999999 667888899988654
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.58 E-value=1.7e-07 Score=97.23 Aligned_cols=81 Identities=20% Similarity=0.495 Sum_probs=73.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
...+.|+|..|+..+...||+.||++||.|+-.+|+.+..+.-.|+|+||++.+.+.|.++|+.++ .+|.++.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 344679999999999999999999999999999999988888889999999999999999998888 9999999999987
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 73
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.1e-07 Score=98.73 Aligned_cols=77 Identities=26% Similarity=0.524 Sum_probs=71.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEecc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKRAM 81 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~a~ 81 (456)
.+.|||..|+..+-..+|+.||++||.|+-++|+....+.-.|.|+||++.+.++|.+||+++| +|.++.|.|++++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4789999999999999999999999999999999988888889999999999999999999766 7999999998874
No 132
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.4e-08 Score=91.87 Aligned_cols=77 Identities=21% Similarity=0.274 Sum_probs=69.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
..++|||.||...|+||-|.|+|-+-|.|.+|.|..+++ .+.| ||||+|++|..+.-|+++++ ..|.++.|.|++..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 568899999999999999999999999999999998877 5566 99999999999999999998 88999988887643
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=1.1e-08 Score=102.67 Aligned_cols=150 Identities=19% Similarity=0.341 Sum_probs=118.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---cCCcCCCceEEEEecch
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ---DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~---~~~~l~Gr~I~v~~a~~ 82 (456)
.+|||+||.+.++..+|+.+|...-.-..-.+|.. .+|+||++.|...|.++++ .+.++.++.++++..++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47999999999999999999986522222222221 2799999999999999998 45689999999988876
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEE-eecCCCCCcceEEEEEeCCH
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVI-MYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i-~~d~~tg~~rGfAFV~F~s~ 161 (456)
+..+ +++|-|.|+|....|+.|..|+.+|+.|+.|.. +.|.+|- ..-|+|...
T Consensus 76 kkqr----------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~ 129 (584)
T KOG2193|consen 76 KKQR----------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQ 129 (584)
T ss_pred HHHH----------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHH
Confidence 6543 456889999999999999999999999999875 4555431 344677888
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
+.++.+|.+++ +.|....++|.+...
T Consensus 130 ~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 130 QQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHhhcchHhhhhhhhcccCch
Confidence 88888887777 889999988877543
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=8.1e-08 Score=100.00 Aligned_cols=174 Identities=20% Similarity=0.202 Sum_probs=101.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~ 79 (456)
+..+++|+|-|||.+|++++|+++|+.||+|++|+... ..++.+||+|-|..+|++|++. ..+|.++.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 34579999999999999999999999999999955433 3468999999999999999994 4477777776322
Q ss_pred cchhHHHhhhccc-CCC-CCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEE
Q 035855 80 AMSREEQQFSARS-GNT-NSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFIS 157 (456)
Q Consensus 80 a~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~ 157 (456)
...+......... ... ...........-..-.||+- |++.+...-++.+|+-++.++. +...... -.-||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-----hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-----HQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchh-----hhhhhh
Confidence 1111110000000 000 00000000001112223333 8888888777777777777765 3322111 146788
Q ss_pred eCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 158 FDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 158 F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
|.+..++..++....+.+.+....+.++.+
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEecCC
Confidence 866555533333223555555544444443
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.49 E-value=2.9e-07 Score=90.86 Aligned_cols=79 Identities=23% Similarity=0.411 Sum_probs=71.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD--------VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG 177 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G 177 (456)
..++.|||.+||.++|.+++.++|++||.|.+ |+|.++.+ +..+|=|.|.|-.+++++-||+.++ .+|.+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 45567999999999999999999999998754 78888876 8999999999999999999999999 89999
Q ss_pred cEEEEEEcc
Q 035855 178 KQVEVKRAL 186 (456)
Q Consensus 178 r~I~V~~a~ 186 (456)
+.|+|+.|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999999876
No 136
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.49 E-value=4.6e-07 Score=90.17 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=76.8
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD--------VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN 176 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~ 176 (456)
.....+|||-.|+..+++++|.++|.+++.|+. |+|.+|++|.++|+-|.|+|++..+|++||.... +.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 456678999999999999999999999998863 7889999999999999999999999999999888 9999
Q ss_pred CcEEEEEEccCCC
Q 035855 177 GKQVEVKRALPKD 189 (456)
Q Consensus 177 Gr~I~V~~a~~k~ 189 (456)
+.+|+|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999988765
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.46 E-value=7.7e-08 Score=96.07 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=116.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT---TGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~---tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
....|-|.||.+.+|.|+|..||..+|.|.++.|+-... .....-.|||.|.|...+..|.. ....|-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 346799999999999999999999999999999987432 33456789999999998888876 44455667776655
Q ss_pred cchhHHHh--hhcccCCCC-------------CC-------CC----CCCC----------CcccccEEEEcCCCCCCCH
Q 035855 80 AMSREEQQ--FSARSGNTN-------------SG-------RS----NGGG----------GTIRTKKIFVGGLPPTLTE 123 (456)
Q Consensus 80 a~~~~~~~--~~~~~~~~~-------------~~-------~~----~~~~----------~~~~~~~LfV~nLp~~~te 123 (456)
.....+.. ......... .. +. ...+ .+.-.++|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 42211111 000000000 00 00 0000 0111256899999999999
Q ss_pred HHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCC
Q 035855 124 DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG 177 (456)
Q Consensus 124 edL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~G 177 (456)
.+|.++|+.+|+|...++..... .-+|.|+|........|+.+++.++.=
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~k~ 215 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRERKR 215 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhhhh
Confidence 99999999999998877643222 126889999988899999988866653
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.43 E-value=2.1e-07 Score=88.43 Aligned_cols=80 Identities=26% Similarity=0.586 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v~~ 79 (456)
+.++-+||++.|..++++|.|...|++|-.-...+|++|+.|++++||.||.|.+.+++.+||+++. -+..+.|.++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999999543 56667776654
Q ss_pred cc
Q 035855 80 AM 81 (456)
Q Consensus 80 a~ 81 (456)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 139
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.39 E-value=9.9e-07 Score=93.66 Aligned_cols=75 Identities=12% Similarity=0.306 Sum_probs=64.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
++|.|.|+|++++-+||.++|..|-.+-.-++++-.+++.+.|.|.|.|++.+.|.+|...++ +.|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 479999999999999999999999877666666666779999999999999888888876666 889999988865
No 140
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.37 E-value=4.9e-07 Score=87.07 Aligned_cols=82 Identities=18% Similarity=0.473 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.+.|||+|+.+.+|.++|+++|+.|+.|..+.|..++..+.+|+|+||+|.+.+.++++++ +...|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 4678999999999999999999999999999999999999998999999999999999999999 778899999998776
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 544
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.34 E-value=3.9e-06 Score=69.90 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=62.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcC----CCceEEE
Q 035855 6 GKLFIGGISWETSEERLREYFSQY--GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSL----DGRTVEA 77 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~--G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l----~Gr~I~v 77 (456)
+||.|.|||...|.++|++++... +...-+-+..|..+..+.|||||-|.++++|.+..+ +..+| ..|..+|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999854 556667788888899999999999999999999988 33333 2355666
Q ss_pred Eecchh
Q 035855 78 KRAMSR 83 (456)
Q Consensus 78 ~~a~~~ 83 (456)
.+|.-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 666543
No 142
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.33 E-value=4.5e-06 Score=78.16 Aligned_cols=85 Identities=13% Similarity=0.252 Sum_probs=66.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEE-eecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC---CcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVI-MYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN---GKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i-~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~---Gr~I~ 181 (456)
...++|||.+||.++...||..+|..|---+.+.| +.++..+-.+=+|||+|.+...|++|+.+++ ..|| +.+|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35789999999999999999999999854444443 4555555555699999999999999998888 6664 56788
Q ss_pred EEEccCCCCC
Q 035855 182 VKRALPKDAN 191 (456)
Q Consensus 182 V~~a~~k~~~ 191 (456)
|++++...+.
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 8887765543
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.28 E-value=6.2e-06 Score=68.68 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=66.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhc--CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC----CcEEEE
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAY--GHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN----GKQVEV 182 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~----Gr~I~V 182 (456)
++|.|+|||...|.++|.+++... +....+-++.|..+....|||||.|.+++++.+..+..+ +.+. .|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999763 567778899999999999999999999999888876665 4443 577888
Q ss_pred EEccCC
Q 035855 183 KRALPK 188 (456)
Q Consensus 183 ~~a~~k 188 (456)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887644
No 144
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=1e-06 Score=83.22 Aligned_cols=72 Identities=26% Similarity=0.592 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
.+|||.+||+.+.+.||++||..|+.|.+|.+.. +|+||+|+++.+|+.|+..++ ++|.+.++.|++++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998853 489999999888888887776 8999988888888765
Q ss_pred C
Q 035855 189 D 189 (456)
Q Consensus 189 ~ 189 (456)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.4e-06 Score=90.83 Aligned_cols=71 Identities=23% Similarity=0.475 Sum_probs=62.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
...+.+|+|-|||.+|++++|+++|+.||+|+.|+.- ...++.+||+|-|..+|++|++.++ .+|.+++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4577899999999999999999999999999986553 4446799999999999999998888 899999987
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=1.2e-07 Score=102.76 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=120.2
Q ss_pred cEEEEcCCCccCcHH-HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEE-RLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee-~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~ 83 (456)
+++.+.++.+...+. .++..|+.++.|+++++......-...-+.++++..+.+++.++. ....+..+.+.+..++++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~ 651 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAE 651 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCch
Confidence 456677777776544 678899999999999987732222222288899999999999987 444566666666666555
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
+.........+ ......++||+||+..+.++||...|..++.|+.|.|...+.+.+.||.|+|+|.+++.
T Consensus 652 ~~~~~~kvs~n----------~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 652 EKEENFKVSPN----------EIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred hhhhccCcCch----------HHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 42222111110 01245689999999999999999999999998888887777789999999999999999
Q ss_pred HHHHHHHcCCccCCc
Q 035855 164 VDRVLQKTFHDLNGK 178 (456)
Q Consensus 164 a~aal~~~~~~l~Gr 178 (456)
+.+|+...+..+-++
T Consensus 722 ~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 722 AGAAVAFRDSCFFGK 736 (881)
T ss_pred hhhhhhhhhhhhhhh
Confidence 999998888555553
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.02 E-value=8.7e-06 Score=86.92 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=66.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT---TGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVE 76 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~---tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~ 76 (456)
|+-.+.|||+||++.++|+.|...|-.||+|..++||+.+. .-+.+-|+||.|-+..+|++||+.+. .+....+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34568899999999999999999999999999999999754 34667899999999999999999543 45666666
Q ss_pred EEecc
Q 035855 77 AKRAM 81 (456)
Q Consensus 77 v~~a~ 81 (456)
+-|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 66664
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.99 E-value=8.2e-06 Score=69.16 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC------CccCCcEEEEE
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF------HDLNGKQVEVK 183 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~------~~l~Gr~I~V~ 183 (456)
..|+|.+++..++.++|+++|++|+.|..|.+.+... .|+|.|.++++|++|++++. ..|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999999999976544 69999999988888887664 24666666665
Q ss_pred E
Q 035855 184 R 184 (456)
Q Consensus 184 ~ 184 (456)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.88 E-value=2.7e-05 Score=77.17 Aligned_cols=76 Identities=16% Similarity=0.331 Sum_probs=67.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYG--HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
-+..++||+||-|.+|++||.+.+...| .|.++++..++.++++||||+|...++.++++.|+.+- ++|.|+.-.|
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 3456799999999999999999998877 57788889999999999999999999999999999998 8999987555
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.83 E-value=2.3e-05 Score=83.74 Aligned_cols=81 Identities=22% Similarity=0.432 Sum_probs=71.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecC---CCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQ---NTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~---~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
...++.|||.||++.++|+.|...|.+||+|..|+||.-+ +..+.+-++||.|.++.++++|++.+. +.+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3566789999999999999999999999999999998643 445667799999999999999998887 888899999
Q ss_pred EEEcc
Q 035855 182 VKRAL 186 (456)
Q Consensus 182 V~~a~ 186 (456)
+-|.+
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 98874
No 151
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=4.9e-06 Score=84.34 Aligned_cols=69 Identities=13% Similarity=0.318 Sum_probs=58.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeec---CCCCC--c--------ceEEEEEeCCHHHHHHHHHHcC
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYD---QNTQR--P--------RGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d---~~tg~--~--------rGfAFV~F~s~eaa~aal~~~~ 172 (456)
+.+.++|.+.|||.+-.-|.|.+||..+|.|+.|+|++- ++..+ + +=+|||+|++.++|.+|.++++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 468899999999999999999999999999999999876 32221 1 3479999999999999999997
Q ss_pred Cc
Q 035855 173 HD 174 (456)
Q Consensus 173 ~~ 174 (456)
.+
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.72 E-value=2.8e-05 Score=77.58 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQ--------TVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG 72 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G 72 (456)
++.-+|||-.||..+++++|.++|.+++.|+. |+|-+++.|.++|+-|.|.|.|...|+.||. +...+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 34678999999999999999999999987753 6677888899999999999999999999998 5567888
Q ss_pred ceEEEEecchhH
Q 035855 73 RTVEAKRAMSRE 84 (456)
Q Consensus 73 r~I~v~~a~~~~ 84 (456)
.+|+|.++..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 888886665443
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.60 E-value=0.00019 Score=57.62 Aligned_cols=67 Identities=21% Similarity=0.392 Sum_probs=45.8
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 110 KKIFVGGLPPTLTEDG----FRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 110 ~~LfV~nLp~~~teed----L~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
..|+|.|||.+.+... |++|++.+| .|.+|. .+.|+|.|.+++.|++|++.++ .++-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5699999999988654 667888887 555442 1369999999999999998887 88999999999
Q ss_pred Ecc
Q 035855 184 RAL 186 (456)
Q Consensus 184 ~a~ 186 (456)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.56 E-value=0.00028 Score=59.83 Aligned_cols=69 Identities=30% Similarity=0.452 Sum_probs=42.2
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-------CCcCCCceEEEE
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD-------KHSLDGRTVEAK 78 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~-------~~~l~Gr~I~v~ 78 (456)
+.|+|.+++.+++.++|+++|++|++|..|.+.+... .|+|-|.++++|++|++. ...|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999888877542 799999999999999982 234566666555
Q ss_pred ec
Q 035855 79 RA 80 (456)
Q Consensus 79 ~a 80 (456)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 43
No 155
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.54 E-value=0.00011 Score=73.03 Aligned_cols=78 Identities=13% Similarity=0.373 Sum_probs=64.7
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 6 GKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
-.+||+||-|.+|+++|.+.+...| .+.++++...+..+.+||||+|...+..+.++.|+ -..+|.++.-.|....
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 3589999999999999999998765 46778888888899999999999999999999998 4557888766665444
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
+.
T Consensus 161 K~ 162 (498)
T KOG4849|consen 161 KT 162 (498)
T ss_pred hh
Confidence 33
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.48 E-value=0.00039 Score=55.88 Aligned_cols=70 Identities=11% Similarity=0.285 Sum_probs=43.9
Q ss_pred CcEEEEcCCCccCcHHHHH----HHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEE
Q 035855 5 QGKLFIGGISWETSEERLR----EYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEA 77 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~----e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v 77 (456)
...|+|.|||.+.+...|+ ++++.+| .|.+| . .+.|+|.|.+++.|++|++ +.+.+.+++|.|
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 3579999999998766555 5555664 55443 1 1579999999999999999 566899999999
Q ss_pred EecchhH
Q 035855 78 KRAMSRE 84 (456)
Q Consensus 78 ~~a~~~~ 84 (456)
.+.....
T Consensus 72 ~~~~~~r 78 (90)
T PF11608_consen 72 SFSPKNR 78 (90)
T ss_dssp ESS--S-
T ss_pred EEcCCcc
Confidence 8875433
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.46 E-value=0.00027 Score=52.24 Aligned_cols=52 Identities=23% Similarity=0.564 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal 168 (456)
+.|.|.+.+.+..+ +|.++|.+||+|+++.+....+ +.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 56889999887664 4555899999999988873333 8999999999999885
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.44 E-value=0.00018 Score=71.12 Aligned_cols=81 Identities=17% Similarity=0.490 Sum_probs=62.0
Q ss_pred cccccEEEEcCCCCCCCHHH----H--HHHHHhcCceeEEEEeecCCCCC-cceE--EEEEeCCHHHHHHHHHHcC-Ccc
Q 035855 106 TIRTKKIFVGGLPPTLTEDG----F--RQYFEAYGHVTDVVIMYDQNTQR-PRGF--GFISFDTEDAVDRVLQKTF-HDL 175 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teed----L--~~~F~~fG~V~~v~i~~d~~tg~-~rGf--AFV~F~s~eaa~aal~~~~-~~l 175 (456)
.++..-+||-.|++.+..|+ | .++|.+||.|+.|.|-+...... ..+. .+|+|.+.|+|.++|...+ ..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 45666789999999988777 3 38899999999998876542211 1222 4999999888888888877 889
Q ss_pred CCcEEEEEEcc
Q 035855 176 NGKQVEVKRAL 186 (456)
Q Consensus 176 ~Gr~I~V~~a~ 186 (456)
+||.|+..+-.
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999998755
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.35 E-value=0.00044 Score=51.16 Aligned_cols=53 Identities=13% Similarity=0.333 Sum_probs=43.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL 64 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl 64 (456)
.+.|-|.+.+++..+ +|.++|++||+|.++.+-... -+.+|+|+++.+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 367889999988776 455588999999998876322 38999999999999986
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00062 Score=71.03 Aligned_cols=62 Identities=21% Similarity=0.411 Sum_probs=58.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFS-QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~-~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..+||||+.||.-++.++|-.+|+ .||-|.-+-|-.|++-+-+||-+=|+|.+..+-.+||+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 358999999999999999999999 89999999999998889999999999999999999998
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.29 E-value=0.00044 Score=72.44 Aligned_cols=72 Identities=13% Similarity=0.262 Sum_probs=57.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHh--cCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEA--YGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEV 182 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~--fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V 182 (456)
+.+.|+|+.||+++-+|+||.||+. +-++++|++-.... =||+|+++.+|+.|.+.+. ++|.+|+|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4477899999999999999999954 67888888865432 6999999888888876554 8899999876
Q ss_pred EEcc
Q 035855 183 KRAL 186 (456)
Q Consensus 183 ~~a~ 186 (456)
.+..
T Consensus 247 RIKa 250 (684)
T KOG2591|consen 247 RIKA 250 (684)
T ss_pred hhhh
Confidence 5543
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.20 E-value=0.00019 Score=71.48 Aligned_cols=79 Identities=20% Similarity=0.463 Sum_probs=69.9
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchhH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~~ 84 (456)
+-++|.+|+..+++++|+++|..++.|..++++.++.++..++|++|+|.+...+.++|. ..+.+.++++.+.....+.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCc
Confidence 334499999999999999999999999999999999999999999999999999999998 5567888888887765543
No 163
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.00 E-value=0.0022 Score=53.81 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=52.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEE-EeecC------CCCCcceEEEEEeCCHHHHHHHHHHcCCccCCc-E
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV-IMYDQ------NTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK-Q 179 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~-i~~d~------~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr-~ 179 (456)
...-|.|-+.|+. ....|.++|++||+|.+.. +.++. ..........|+|+++.+|++||.++...|.+. .
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4566888899988 5677888999999998775 11110 001123389999999999999999999889875 5
Q ss_pred EEEEEcc
Q 035855 180 VEVKRAL 186 (456)
Q Consensus 180 I~V~~a~ 186 (456)
|-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.81 E-value=0.0037 Score=52.47 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=51.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecC-------CCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCc-
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREK-------TTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGR- 73 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~-------~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr- 73 (456)
.+++-|.|=++|+. ....|.+.|++||+|++..-+... .........-|.|+++.+|++||+ +...|.+.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 45677999999988 555888999999999887511110 011223478999999999999999 55567664
Q ss_pred eEEEEecchh
Q 035855 74 TVEAKRAMSR 83 (456)
Q Consensus 74 ~I~v~~a~~~ 83 (456)
.+-|++.++.
T Consensus 83 mvGV~~~~~~ 92 (100)
T PF05172_consen 83 MVGVKPCDPA 92 (100)
T ss_dssp EEEEEE-HHH
T ss_pred EEEEEEcHHh
Confidence 5556666443
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.78 E-value=0.0042 Score=55.34 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=52.1
Q ss_pred cccEEEEcCCC-----CCCCH----HHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCc
Q 035855 108 RTKKIFVGGLP-----PTLTE----DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGK 178 (456)
Q Consensus 108 ~~~~LfV~nLp-----~~~te----edL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr 178 (456)
+..+|.|.-+. ....+ ++|.+.|.+||+|.=|+++.+ .-+|+|.+-+.|.+|+++...+|.++
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCE
Confidence 44566666554 11222 367788889999988888754 48999999999999999999999999
Q ss_pred EEEEEEccCC
Q 035855 179 QVEVKRALPK 188 (456)
Q Consensus 179 ~I~V~~a~~k 188 (456)
.|+|+...|.
T Consensus 98 ~l~i~LKtpd 107 (146)
T PF08952_consen 98 TLKIRLKTPD 107 (146)
T ss_dssp EEEEEE----
T ss_pred EEEEEeCCcc
Confidence 9999887653
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.75 E-value=0.0013 Score=67.11 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeec---CCCC--C--------cceEEEEEeCCHHHHHHHHHcC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMRE---KTTG--R--------PRGFGFVVFADPSILDRVLQDK 67 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d---~~tg--~--------srGfaFVeF~d~e~A~kAl~~~ 67 (456)
...++|.+-|||.+-.-|.|.++|..+|.|+.|+|+.- +.+. . .+=+|||||...+.|++|.+.+
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 45799999999999999999999999999999999986 2221 1 2567999999999999999843
No 167
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.70 E-value=0.0017 Score=65.58 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=63.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNT---QRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~t---g~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..|.|.||.+.+|.|+|+.||...|.|.++.|+..... ....-.|||.|.+...+..|..+.++.|=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 48999999999999999999999999999999864322 22344899999999999999999997777777766553
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.0051 Score=59.15 Aligned_cols=95 Identities=20% Similarity=0.330 Sum_probs=72.0
Q ss_pred cCCcCCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecC
Q 035855 66 DKHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQ 145 (456)
Q Consensus 66 ~~~~l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~ 145 (456)
+.....++.++|.++. .+.|+|.||+.-++-|.|.+.|+.|++|+..+++.|-
T Consensus 15 d~~~~~~~~lr~rfa~---------------------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~ 67 (275)
T KOG0115|consen 15 DGRFPKGRSLRVRFAM---------------------------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD 67 (275)
T ss_pred CCCCCCCCceEEEeec---------------------------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc
Confidence 3445667888888773 2669999999999999999999999999998888775
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcC-----CccCCcEEEEEEccCC
Q 035855 146 NTQRPRGFGFISFDTEDAVDRVLQKTF-----HDLNGKQVEVKRALPK 188 (456)
Q Consensus 146 ~tg~~rGfAFV~F~s~eaa~aal~~~~-----~~l~Gr~I~V~~a~~k 188 (456)
. .++.+-.+|+|..+-.+.+|+..+. .+..++++-|+.....
T Consensus 68 r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~ 114 (275)
T KOG0115|consen 68 R-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQP 114 (275)
T ss_pred c-ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhcc
Confidence 4 6777899999988666666665553 4556666666554433
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.51 E-value=0.0048 Score=59.32 Aligned_cols=59 Identities=20% Similarity=0.403 Sum_probs=54.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..|+|.||+.-++.|.|.+.|+.|++|...+++.|. ..+..+-.+|+|..+-.|.+|++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHH
Confidence 579999999999999999999999999988888875 67788889999999999999987
No 170
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.41 E-value=0.0016 Score=67.25 Aligned_cols=75 Identities=15% Similarity=0.258 Sum_probs=58.8
Q ss_pred ccccEEEEcCCCCCC-CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTL-TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~-teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
.+.+.|-|.-+|... |-++|...|.+||+|++|.|-.... .|.|+|.+...+-+|.......|+++.|+|.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEe
Confidence 344455555555554 5689999999999999999865533 599999998877677766778999999999998
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
.+
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.40 E-value=0.0035 Score=60.28 Aligned_cols=72 Identities=18% Similarity=0.408 Sum_probs=57.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHHHcC-Cc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNT--------QRPRG----FGFISFDTEDAVDRVLQKTF-HD 174 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~t--------g~~rG----fAFV~F~s~eaa~aal~~~~-~~ 174 (456)
.+-+||+++||+.+....|+++|++||.|-+|-+.....+ +..+. .+.|+|.+...|+++.++++ ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988766544 11111 47899999888888877776 77
Q ss_pred cCCcE
Q 035855 175 LNGKQ 179 (456)
Q Consensus 175 l~Gr~ 179 (456)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77764
No 172
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.37 E-value=0.031 Score=62.34 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=7.3
Q ss_pred CCcceEEEEEeCCHHH
Q 035855 44 GRPRGFGFVVFADPSI 59 (456)
Q Consensus 44 g~srGfaFVeF~d~e~ 59 (456)
++.++|+--.|.++..
T Consensus 899 g~q~~~~g~kfsdhva 914 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDHVA 914 (1282)
T ss_pred cchhhccccccccchh
Confidence 3344444444554443
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.29 E-value=0.014 Score=52.00 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=52.1
Q ss_pred CCCCCcEEEEcCCC-----ccCcHH----HHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcC
Q 035855 1 MDSDQGKLFIGGIS-----WETSEE----RLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSL 70 (456)
Q Consensus 1 me~~~r~LfVgnLP-----~~vtee----~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l 70 (456)
|-+.+-||.|.=+. ....++ +|.+.|+.||+|+-++++.+. -+|+|.+-++|.+||+ +..++
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEE
Confidence 34566777777666 223333 777888899999888777653 6899999999999999 78899
Q ss_pred CCceEEEEecchhHH
Q 035855 71 DGRTVEAKRAMSREE 85 (456)
Q Consensus 71 ~Gr~I~v~~a~~~~~ 85 (456)
.++.|.|+...+.-.
T Consensus 95 ~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 95 NGRTLKIRLKTPDWL 109 (146)
T ss_dssp TTEEEEEEE------
T ss_pred CCEEEEEEeCCccHH
Confidence 999999987765444
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.27 E-value=0.01 Score=59.11 Aligned_cols=76 Identities=24% Similarity=0.494 Sum_probs=58.3
Q ss_pred cEEEEcCCCccCcHHHH------HHHHhcCCCeeEEEEeecCCC-CCcceEE--EEEeCCHHHHHHHHH--cCCcCCCce
Q 035855 6 GKLFIGGISWETSEERL------REYFSQYGDVLQTVVMREKTT-GRPRGFG--FVVFADPSILDRVLQ--DKHSLDGRT 74 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L------~e~F~~~G~V~~v~i~~d~~t-g~srGfa--FVeF~d~e~A~kAl~--~~~~l~Gr~ 74 (456)
.-|||-.||+.+-.|++ .++|-+||.|++|+|-+.... ......+ +|+|.+.|+|.+||. +...+++|.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999876662 489999999999988765421 1112233 999999999999998 667899999
Q ss_pred EEEEecc
Q 035855 75 VEAKRAM 81 (456)
Q Consensus 75 I~v~~a~ 81 (456)
|++..-.
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9886553
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.19 E-value=0.011 Score=62.40 Aligned_cols=75 Identities=13% Similarity=0.282 Sum_probs=58.1
Q ss_pred cccEEEEcCCCCCC--C----HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc-CCcE
Q 035855 108 RTKKIFVGGLPPTL--T----EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL-NGKQ 179 (456)
Q Consensus 108 ~~~~LfV~nLp~~~--t----eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l-~Gr~ 179 (456)
-...|+|.++|.-- . ..-|..+|+++|+|+.+.++.|.+++ .+||.|++|.+...|+.|++.++ +.| ..++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34678999998432 2 23456889999999999999998765 99999999999999999998877 544 3555
Q ss_pred EEEE
Q 035855 180 VEVK 183 (456)
Q Consensus 180 I~V~ 183 (456)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5553
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.09 E-value=0.028 Score=42.92 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=44.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
..+|+|.++. +++.++|+.+|..| .....+..+.|. .|-|.|.++++|.+||..
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 4579999995 79999999999998 234467777765 688999999999999964
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.09 E-value=0.0038 Score=60.02 Aligned_cols=69 Identities=26% Similarity=0.466 Sum_probs=53.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHHH--cCCcC
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTT--------GRPRG----FGFVVFADPSILDRVLQ--DKHSL 70 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~t--------g~srG----faFVeF~d~e~A~kAl~--~~~~l 70 (456)
...|||++||+.+....|+++|++||+|-.|.+.....+ +.++. -++|||.+...|+++.+ +...|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 367999999999999999999999999999888776554 22222 26899999999998877 33345
Q ss_pred CCc
Q 035855 71 DGR 73 (456)
Q Consensus 71 ~Gr 73 (456)
.++
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 443
No 178
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.84 E-value=0.011 Score=62.24 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=57.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHh--cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH----cCCcCCCceEEEE
Q 035855 5 QGKLFIGGISWETSEERLREYFS--QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ----DKHSLDGRTVEAK 78 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~--~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~----~~~~l~Gr~I~v~ 78 (456)
.|.|.|..||..+-+|+|+.||+ .+-.+++|.+-....+ ||+|++++||.+|.+ +..+|.+|.|..+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nW-------yITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNW-------YITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCce-------EEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 46789999999999999999998 4778889998876643 899999999998876 5668999988665
Q ss_pred ec
Q 035855 79 RA 80 (456)
Q Consensus 79 ~a 80 (456)
..
T Consensus 248 IK 249 (684)
T KOG2591|consen 248 IK 249 (684)
T ss_pred hh
Confidence 43
No 179
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.80 E-value=0.005 Score=59.29 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=49.1
Q ss_pred HHHHHHHH-hcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 124 DGFRQYFE-AYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 124 edL~~~F~-~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
|||..+|+ +||+|+++.|..... ...+|-++|.|..+++|++|++.++ .-|.+++|.+++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44445555 899999997765433 3457889999999999999998888 89999999988754
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.78 E-value=0.06 Score=41.09 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=44.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC---ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG---HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG---~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
...+|+|.+| .+++.+||+.+|..|- ...+|+-+-|. -|=|.|.+++.|.+||..+
T Consensus 4 rpeavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4578999999 4588899999999981 34566666554 4899999999999998753
No 181
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.77 E-value=0.0041 Score=64.33 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcCCCccC-cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH-HHcCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWET-SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRV-LQDKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~v-tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kA-l~~~~~l~Gr~I~v~ 78 (456)
|+.+++.|-+--+|+.+ |-++|..+|.+||+|.+|.|-.... .|.|+|.+..+|-+| +.....|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 56788888888899886 6789999999999999999977632 689999999999555 447778999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
|.++..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 998754
No 182
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.76 E-value=0.0052 Score=50.24 Aligned_cols=68 Identities=25% Similarity=0.497 Sum_probs=45.7
Q ss_pred EEEEeCCHHHHHHHHHc-CC--cCCCceEEEEecc--hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHH
Q 035855 50 GFVVFADPSILDRVLQD-KH--SLDGRTVEAKRAM--SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTED 124 (456)
Q Consensus 50 aFVeF~d~e~A~kAl~~-~~--~l~Gr~I~v~~a~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~tee 124 (456)
|.|+|.+++.|++.++. .| .++...+.|+-.. .....+.+... ....++|.|++||..+.||
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~-------------~vs~rtVlvsgip~~l~ee 67 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFS-------------GVSKRTVLVSGIPDVLDEE 67 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEE-------------cccCCEEEEeCCCCCCChh
Confidence 68999999999999983 33 4666555554332 22212111111 2356889999999999999
Q ss_pred HHHHHH
Q 035855 125 GFRQYF 130 (456)
Q Consensus 125 dL~~~F 130 (456)
+|++.+
T Consensus 68 ~l~D~L 73 (88)
T PF07292_consen 68 ELRDKL 73 (88)
T ss_pred hheeeE
Confidence 999854
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.65 E-value=0.031 Score=54.81 Aligned_cols=62 Identities=19% Similarity=0.252 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCceeEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHH-HHcCCccCCcEEEEEE
Q 035855 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPR-GFGFISFDTEDAVDRVL-QKTFHDLNGKQVEVKR 184 (456)
Q Consensus 123 eedL~~~F~~fG~V~~v~i~~d~~tg~~r-GfAFV~F~s~eaa~aal-~~~~~~l~Gr~I~V~~ 184 (456)
++++++.+++||.|.+|.|..++.....+ =-.||+|+..+.+.+|+ .++...|.|+.|...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46788999999999999998765332211 14799999966555555 5555999999988765
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.64 E-value=0.027 Score=45.36 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=42.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~ 173 (456)
+....+|+ .|.+....||.++|+.||.|. |.-+.| | -|||.+.+++.++.++..+.+
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhcc
Confidence 45677777 999999999999999999875 443333 3 699999999999888877753
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.041 Score=58.28 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCcc------CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCC
Q 035855 4 DQGKLFIGGISWE------TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDG 72 (456)
Q Consensus 4 ~~r~LfVgnLP~~------vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~G 72 (456)
.+..|+|-++|.- .-.-.|..+|+++|+|+++.+..+... ..+||.|+||++..+|+.|++. .+.|+-
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3567999999842 223345678899999999999887754 4999999999999999999993 344443
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.24 E-value=0.064 Score=43.25 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=38.8
Q ss_pred EEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC
Q 035855 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~ 68 (456)
||---+|++....+|.++|+.||.| .|..+.|. .|||...+++.|..++....
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 4444499999999999999999998 44444443 89999999999999888433
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.19 E-value=0.29 Score=48.29 Aligned_cols=167 Identities=9% Similarity=0.112 Sum_probs=99.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC-------CCCcceEEEEEeCCHHHHHHH----HH----cCCc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT-------TGRPRGFGFVVFADPSILDRV----LQ----DKHS 69 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~-------tg~srGfaFVeF~d~e~A~kA----l~----~~~~ 69 (456)
.|.|.+.||..+++-.++.+.|-+|++|+.|.++.+.. .-+..-.+.+.|-+++.+... |+ -+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999999999999999998761 123346789999999877543 22 3445
Q ss_pred CCCceEEEEecchhHHHhhh----cccCCCC--CCCCCCCCCcccccEEEEcCCCCCCCHHHH-HHHH---HhcC----c
Q 035855 70 LDGRTVEAKRAMSREEQQFS----ARSGNTN--SGRSNGGGGTIRTKKIFVGGLPPTLTEDGF-RQYF---EAYG----H 135 (456)
Q Consensus 70 l~Gr~I~v~~a~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~LfV~nLp~~~teedL-~~~F---~~fG----~ 135 (456)
+.-..|.+.+..-+...+.. ....+.. ..-.-.-.....++.|.|. +...+.++|| .+.+ ..-. .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEE
Confidence 66666766555422111110 0000000 0000011123456777776 4455544443 3222 2222 3
Q ss_pred eeEEEEeec--CCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 136 VTDVVIMYD--QNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 136 V~~v~i~~d--~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
|+.|.|+.. +...-++-||.++|-+...|..+++.+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 667777643 3334567899999999777777766554
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.17 E-value=0.011 Score=63.68 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..-+|||+||...+.++-++.++..+|.|..++.+. |+|++|.++..+.+++. ....++++.+.++...
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 456899999999999999999999999998877765 99999999999999988 4446667766554321
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFE 131 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~ 131 (456)
+.-...... ........+.-..+..-+.++|.+++....+...+..|.
T Consensus 110 -q~~~n~~k~-~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 110 -QTIENADKE-KSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred -hhhcCcccc-ccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 110000000 000000000111111135577777777766666666654
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.97 E-value=0.018 Score=58.89 Aligned_cols=76 Identities=20% Similarity=0.436 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC--CccCCcEEEEEEccC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF--HDLNGKQVEVKRALP 187 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~--~~l~Gr~I~V~~a~~ 187 (456)
.+|+|.||.+.++.+||+.+|...-.-..-.++. ..+++||.+.++..+.++++.+. .++.|++++|+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999996542111112222 13599999999999999998887 799999999999887
Q ss_pred CCCC
Q 035855 188 KDAN 191 (456)
Q Consensus 188 k~~~ 191 (456)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7543
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.85 E-value=0.033 Score=59.29 Aligned_cols=77 Identities=9% Similarity=0.116 Sum_probs=58.3
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHH-hcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C---ccCCcE
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFE-AYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H---DLNGKQ 179 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~-~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~---~l~Gr~ 179 (456)
....+..|+|.||-.-+|.-+|++|+. ..+.|++.+|-+- |-.|||.|.+.+.|.+.+..++ . .-+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456778999999999999999999998 4667777744222 2369999999777777766655 3 346788
Q ss_pred EEEEEccC
Q 035855 180 VEVKRALP 187 (456)
Q Consensus 180 I~V~~a~~ 187 (456)
|.|++...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88888663
No 191
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.72 E-value=0.018 Score=55.58 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=43.4
Q ss_pred cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 28 QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 28 ~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
+|++|++++|.... .-.-+|-++|.|..+++|++|++ +...+.+++|.+++.+
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 89999999887754 34567899999999999999999 4557899998876653
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.69 E-value=0.014 Score=58.43 Aligned_cols=82 Identities=21% Similarity=0.440 Sum_probs=60.8
Q ss_pred ccccEEEEcCCCCCCCHHHHH---HHHHhcCceeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHcC-CccCCcE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFR---QYFEAYGHVTDVVIMYDQNTQ---RPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ 179 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~---~~F~~fG~V~~v~i~~d~~tg---~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~ 179 (456)
+....++|-.|+..+.++++. +.|.+||.|..|.+.++.... ....-++|+|+++|+++.+|...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 455678899999887665544 568889999999998876311 112248999999888888888777 7788888
Q ss_pred EEEEEccCC
Q 035855 180 VEVKRALPK 188 (456)
Q Consensus 180 I~V~~a~~k 188 (456)
|++.+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777766654
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.62 E-value=0.021 Score=52.94 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=38.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc-CCCe---eEEEEeecCC-C-CCcceEEEEEeCCHHHHHHHHH
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQ-YGDV---LQTVVMREKT-T-GRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~-~G~V---~~v~i~~d~~-t-g~srGfaFVeF~d~e~A~kAl~ 65 (456)
.+..+|.|.+||+.+||+++.+.++. +.+. ..+.-..... . ...---|+|.|.+.+++...++
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~ 73 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRD 73 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHH
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHH
Confidence 45679999999999999999997776 5554 2222112111 1 1122458999999999888887
No 194
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.28 E-value=0.12 Score=50.79 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=50.9
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCc-ceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEecch
Q 035855 18 SEERLREYFSQYGDVLQTVVMREKTTGRP-RGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRAMS 82 (456)
Q Consensus 18 tee~L~e~F~~~G~V~~v~i~~d~~tg~s-rGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a~~ 82 (456)
-|+++++.+++||.|.+|+|...+..... .--.||+|...++|.+|+-+ ...|.+|.+..++-..
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 36788899999999999999987653322 22479999999999999874 4578889888876654
No 195
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.17 E-value=0.24 Score=44.01 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=55.0
Q ss_pred CCCCCcEEEEcCCCccCc-HHH---HHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-CCcCCCceE
Q 035855 1 MDSDQGKLFIGGISWETS-EER---LREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD-KHSLDGRTV 75 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vt-ee~---L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~-~~~l~Gr~I 75 (456)
+|+.-.||.|.=|.+++. .|+ |...++.||+|..|.++-. -.|.|+|+|..+|.+|+.. ....-+..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 355667888887776653 344 4455678999998877653 3799999999999999994 346777888
Q ss_pred EEEecc
Q 035855 76 EAKRAM 81 (456)
Q Consensus 76 ~v~~a~ 81 (456)
.+.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887753
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.00 E-value=0.12 Score=53.57 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY-GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~-G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
++.+.|+|--+|..+|-.+|..|+..+ -.|.+++|++|.. .++=.++|+|.+.++|....+
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~ 133 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYE 133 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHH
Confidence 347899999999999999999999866 4588999999654 345579999999999999988
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.69 E-value=0.041 Score=51.01 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=46.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHh-cCce---eEEEEeecC--CCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC---
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEA-YGHV---TDVVIMYDQ--NTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG--- 177 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~-fG~V---~~v~i~~d~--~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G--- 177 (456)
...+|.|++||+++||+++.+.++. +... ..+.-.... .....-.-|+|.|.+.+++...++..+ +.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4469999999999999999997765 5544 233311111 111123469999999888888887765 33322
Q ss_pred --cEEEEEEccC
Q 035855 178 --KQVEVKRALP 187 (456)
Q Consensus 178 --r~I~V~~a~~ 187 (456)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3455666654
No 198
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.30 E-value=0.4 Score=42.61 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=57.2
Q ss_pred CcccccEEEEcCCCCCCC-HHHHH---HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEE
Q 035855 105 GTIRTKKIFVGGLPPTLT-EDGFR---QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~t-eedL~---~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I 180 (456)
.+++-.+|.|+=|..++. .|||+ ..++.||+|+.|.+.-. . .|.|+|+|..+|-+|+.......-+..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----q--savVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----Q--SAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----c--eEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 345778899988777653 35555 44578999999988632 1 5999999998888888888777888888
Q ss_pred EEEEcc
Q 035855 181 EVKRAL 186 (456)
Q Consensus 181 ~V~~a~ 186 (456)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 199
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.09 E-value=0.029 Score=62.34 Aligned_cols=78 Identities=21% Similarity=0.267 Sum_probs=55.8
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-CCccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT-FHDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~-~~~l~Gr~I~V~~ 184 (456)
...+.+||++||+..+++.+|+..|..+|.|++|.|-.-+....+. |+||.|.+-+++-.++..+ ...|.--.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-YAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-hhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 4567889999999999999999999999999999986553322222 8999998866655554433 3444333444433
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.71 E-value=0.56 Score=36.90 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHhcC-----ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 119 PTLTEDGFRQYFEAYG-----HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 119 ~~~teedL~~~F~~fG-----~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
..++..+|..++.... .|-+|+|..+ |+||+-..+. ++.+++.++ ..+++++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~~-a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEEV-AEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHHH-HHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678889999988764 4556777643 8999997764 445555544 8999999999875
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.08 E-value=0.52 Score=46.69 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=54.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcE-EEEEEccC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ-VEVKRALP 187 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~-I~V~~a~~ 187 (456)
..=|.|-++|+. .-.-|..+|++||+|++.+.... + -+-+|.|.++-++++||.++.+.|++.. |-|+....
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 334566666665 34667889999999987766522 1 2899999999999999999998888754 56666555
Q ss_pred CCC
Q 035855 188 KDA 190 (456)
Q Consensus 188 k~~ 190 (456)
|..
T Consensus 270 ksv 272 (350)
T KOG4285|consen 270 KSV 272 (350)
T ss_pred HHH
Confidence 543
No 202
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.68 E-value=2.3 Score=47.21 Aligned_cols=69 Identities=10% Similarity=0.049 Sum_probs=46.5
Q ss_pred EEEEc-CCCCCCCHHHHHHHHHhcCce-----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 111 KIFVG-GLPPTLTEDGFRQYFEAYGHV-----TDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 111 ~LfV~-nLp~~~teedL~~~F~~fG~V-----~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
++||. +-...++..+|..++..-+.| -.|+|+.+ |.||+..... ++.+++.+. ..+.+++|.|+
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKGM-PGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChhh-HHHHHHHhccccccCCceEEE
Confidence 34443 224568888888888776644 45666533 7899986544 455555554 78999999999
Q ss_pred EccCC
Q 035855 184 RALPK 188 (456)
Q Consensus 184 ~a~~k 188 (456)
.+..+
T Consensus 559 ~~~~~ 563 (629)
T PRK11634 559 LLGDA 563 (629)
T ss_pred ECCCC
Confidence 88643
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.89 Score=48.71 Aligned_cols=126 Identities=12% Similarity=0.274 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCcc-CcHHHHHHHHhcC----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEE
Q 035855 2 DSDQGKLFIGGISWE-TSEERLREYFSQY----GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVE 76 (456)
Q Consensus 2 e~~~r~LfVgnLP~~-vtee~L~e~F~~~----G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~ 76 (456)
+...++|-|-||.|+ |..++|.-+|+.| |.|+.|.|.... |-....+ ..++.+.+++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeRM~------eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKERMK------EEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHHhh------hhcccCChhh
Confidence 456789999999998 7899999999987 467777776532 2211111 1233343333
Q ss_pred EEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEE
Q 035855 77 AKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV 156 (456)
+...+.... ... ..++..++-+++.+.+|. |..++.. ||.|
T Consensus 233 l~~~~e~~~-----------------------~s~-----sD~ee~~~~~~~kLR~Yq-~~rLkYY----------yAVv 273 (650)
T KOG2318|consen 233 LFKPVEEYK-----------------------ESE-----SDDEEEEDVDREKLRQYQ-LNRLKYY----------YAVV 273 (650)
T ss_pred hccccccCc-----------------------ccc-----cchhhhhhHHHHHHHHHH-hhhheeE----------EEEE
Confidence 321111000 000 111111222344444443 4445554 8999
Q ss_pred EeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 157 SFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 157 ~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
+|++.+.|+++.+.++ .+|...-..+++
T Consensus 274 ecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 274 ECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred EecCchHHHHHHHhcCcceeccccceeee
Confidence 9999999999999998 777765555544
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.49 E-value=1.7 Score=37.16 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=48.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN 176 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~ 176 (456)
.+..+.+-..|..++.++|..+.+.+- .|+.++|++|... .+=.+.|.|.+.++|++..+..+ +.|+
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 345556666667777788877777654 5778888887543 45579999999999999887766 5544
No 205
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.38 E-value=0.18 Score=53.89 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHh-cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCc-----CCCceEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFS-QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHS-----LDGRTVEA 77 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~-~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~-----l~Gr~I~v 77 (456)
.+..|+|.||-.-+|.-+|++++. ..+.|++++|-+- |-.|||.|.+.++|...+..+|. -+.+.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 357899999999999999999999 5566777733222 34799999999999888775442 24567777
Q ss_pred Eecch
Q 035855 78 KRAMS 82 (456)
Q Consensus 78 ~~a~~ 82 (456)
.+...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 66543
No 206
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.21 E-value=0.15 Score=51.18 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=56.7
Q ss_pred cEEEEcCCCccCcHHHHH---HHHhcCCCeeEEEEeecCC-CC--CcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEE
Q 035855 6 GKLFIGGISWETSEERLR---EYFSQYGDVLQTVVMREKT-TG--RPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEA 77 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~---e~F~~~G~V~~v~i~~d~~-tg--~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v 77 (456)
..+||-.|+..+.+|++. +.|.+|+.|..+++.++.. .. ...-.++|+|..+|+|..||.+ ...++++.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888999887666655 5778889999988888663 11 1112379999999999999994 44677787766
Q ss_pred EecchhH
Q 035855 78 KRAMSRE 84 (456)
Q Consensus 78 ~~a~~~~ 84 (456)
.....+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 5554443
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.19 E-value=0.72 Score=43.07 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEEEEccC
Q 035855 121 LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEVKRALP 187 (456)
Q Consensus 121 ~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V~~a~~ 187 (456)
...+.|+++|.++..+..+.+++.-. -..|.|.+.++|.+|...++ ..|.+..|+|-++.+
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 35588999999999988888775432 58999999999999988766 679999999988743
No 208
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.92 E-value=1.9 Score=42.76 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=56.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCc-eEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGR-TVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr-~I~v~~a~~ 82 (456)
+.=|-|-++|+... ..|..+|++||+|++.+.-..- -+-.|.|.++.+|+|||. +...|++. .|-|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 45577777876544 4788899999999887665322 378999999999999998 44556654 466777666
Q ss_pred hHHHhhhc
Q 035855 83 REEQQFSA 90 (456)
Q Consensus 83 ~~~~~~~~ 90 (456)
+...+...
T Consensus 270 ksvi~~sn 277 (350)
T KOG4285|consen 270 KSVINGSN 277 (350)
T ss_pred HHHhcccc
Confidence 65555443
No 209
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=89.39 E-value=0.64 Score=36.19 Aligned_cols=64 Identities=19% Similarity=0.389 Sum_probs=47.9
Q ss_pred HHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 124 DGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 124 edL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
++|++.|...| +|.+|.-|..+.+..+--.-||+++...+.+.++.. +.|.+.+|+|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I--k~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI--KTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh--HhhCCeEEEEecCCCCC
Confidence 57888888888 588888888887777777889999775444444332 67889999998776543
No 210
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.29 E-value=3.4 Score=35.32 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=41.0
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 7 KLFIGGISWETSEERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
.+.+.-.|+-++.++|..+.+.+- .|..++|++|.. .++=.+.|+|++.++|+...+
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~ 72 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYE 72 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHH
Confidence 344444455566677877777664 466788887653 356689999999999999987
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.82 E-value=0.31 Score=52.79 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=58.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.+..++||++|...+.++-++.+...+|.|..+...+ |+|++|........++.++. .+++++.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4667899999999999999999999999998877653 89999999877777776666 888888876654
No 212
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=88.00 E-value=0.22 Score=55.45 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=25.2
Q ss_pred CCCCcEEEEcCCCccC-cHHHHHHHHhcCCC
Q 035855 2 DSDQGKLFIGGISWET-SEERLREYFSQYGD 31 (456)
Q Consensus 2 e~~~r~LfVgnLP~~v-tee~L~e~F~~~G~ 31 (456)
...+|||+|..||.++ ++|+|.++|++...
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 3578999999999995 68889999998643
No 213
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=87.75 E-value=2.7 Score=41.42 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=33.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
.-|+|.||+.++.-.||+..+.+-+-+ -..|-. +-+++-||++|-+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~ 376 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGN 376 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCC
Confidence 459999999999999999999876532 233322 2345679999954
No 214
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.46 E-value=0.44 Score=42.35 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=74.3
Q ss_pred EEEEcCCC--ccCcHHHHHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEecch
Q 035855 7 KLFIGGIS--WETSEERLREYFSQY-GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRAMS 82 (456)
Q Consensus 7 ~LfVgnLP--~~vtee~L~e~F~~~-G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a~~ 82 (456)
...|+.+. .+.+-+.|.+.+.+. .....+.+..-. .++..+.|.++++++++++.. ..+.+..|.++...+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhcc
Confidence 34555552 345677777777653 333233333321 258899999999999999944 456777777766653
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCC-CCHHHHHHHHHhcCceeEEEEeec
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT-LTEDGFRQYFEAYGHVTDVVIMYD 144 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~i~~d 144 (456)
........ .....-=|.|.+||.. .+++-|+++.+.+|++.+++....
T Consensus 92 ~~~~~~~~--------------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 92 DFNPSEVK--------------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccccc--------------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 32211100 0011233677799988 577889999999999988887543
No 215
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=86.65 E-value=0.82 Score=35.55 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCC
Q 035855 124 DGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188 (456)
Q Consensus 124 edL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k 188 (456)
++|++.|.+.| .|.+|.-|..+++..+--.-||+.....+.+.+++ -+.|.+++|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~--ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILN--IKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEe--ehhhCCeeEEEecCccc
Confidence 57888899988 58889999888888777788999976543333222 17889999999876544
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.65 E-value=2.1 Score=33.09 Aligned_cols=42 Identities=21% Similarity=0.492 Sum_probs=33.6
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
.++-++|+..|++|.- .+|+.|+ | || ||.|.+.++|+++.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----Gf-YIvF~~~~Ea~rC~~~ 52 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----GF-YIVFNDSKEAERCFRA 52 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----EE-EEEECChHHHHHHHHh
Confidence 5788999999999863 4555555 3 56 8999999999999983
No 217
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=86.46 E-value=0.94 Score=39.06 Aligned_cols=59 Identities=10% Similarity=0.277 Sum_probs=33.9
Q ss_pred EEEEcCCCCCC---------CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTL---------TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT-EDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~---------teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s-~eaa~aal~~~~ 172 (456)
++.|.|++.+. +-++|++.|+.|..++ |+.+.++. -.+++++|+|.. -.-.+.|+...+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHHHH
Confidence 45666665443 4578999999998875 66666654 567899999954 666666665543
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.92 E-value=1.5 Score=45.12 Aligned_cols=59 Identities=22% Similarity=0.159 Sum_probs=47.7
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHS 69 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~ 69 (456)
.+.|=|-++|.....|+|..+|+.|.. ..|.|++-..+ .+|.+|.+...|..||..+|.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~ 449 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHD 449 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-----eeEEeecchHHHHHHhhccCc
Confidence 367889999999999999999999976 35555554433 799999999999999986663
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.08 E-value=5.8 Score=39.02 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=61.4
Q ss_pred cCcHHHHHHHHhcC-C--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe-cchhHHHhhhc
Q 035855 16 ETSEERLREYFSQY-G--DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR-AMSREEQQFSA 90 (456)
Q Consensus 16 ~vtee~L~e~F~~~-G--~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~-a~~~~~~~~~~ 90 (456)
.++.=+|.+-+... . ....|+|.... .-||.|.-+-.-.-.|+ .+.-+++..|.+.- +..-+......
T Consensus 48 sisnwdlmerlk~aid~~q~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~ea 120 (445)
T KOG2891|consen 48 SISNWDLMERLKGAIDNHQFDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEA 120 (445)
T ss_pred ccchHHHHHHHHhhcccccccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhh
Confidence 34444555555422 1 23345554433 66899986655555554 34456777776642 22111111111
Q ss_pred ccCCCCC-----------CCCCCCCCcccccEEEEcCCCCC------------CCHHHHHHHHHhcCceeEEEEe
Q 035855 91 RSGNTNS-----------GRSNGGGGTIRTKKIFVGGLPPT------------LTEDGFRQYFEAYGHVTDVVIM 142 (456)
Q Consensus 91 ~~~~~~~-----------~~~~~~~~~~~~~~LfV~nLp~~------------~teedL~~~F~~fG~V~~v~i~ 142 (456)
. ...++ .......+-....+|++..||-. -+|+.|+..|+.||.|..|.|+
T Consensus 121 k-idfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 121 K-IDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred c-CCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 0 00000 00111111223456777777622 3678899999999999999885
No 220
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.90 E-value=2.1 Score=39.93 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=42.0
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC----cCCCceEEEEecc
Q 035855 17 TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH----SLDGRTVEAKRAM 81 (456)
Q Consensus 17 vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~----~l~Gr~I~v~~a~ 81 (456)
...++|+++|..+.++....+++.- .-..|.|.+.++|.+|+...+ .+.++.+++-++.
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 4568999999999999988888753 367899999999999998544 6788888887773
No 221
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=83.01 E-value=68 Score=34.00 Aligned_cols=16 Identities=25% Similarity=0.276 Sum_probs=8.1
Q ss_pred EEEEeCCHHHHHHHHH
Q 035855 50 GFVVFADPSILDRVLQ 65 (456)
Q Consensus 50 aFVeF~d~e~A~kAl~ 65 (456)
-++.|.+.+....+|.
T Consensus 222 ~~~~~~~~~~k~~~l~ 237 (456)
T PRK10590 222 QHVHFVDKKRKRELLS 237 (456)
T ss_pred EEEEEcCHHHHHHHHH
Confidence 3455555554444444
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.70 E-value=4.4 Score=41.74 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=45.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
-.++|-|-++|.....+||..+|+.|..- .++|++-.+| .||-.|.+...|..||.+.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdt-----halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDT-----HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecc-----eeEEeecchHHHHHHhhccC
Confidence 45789999999999999999999999753 2333332233 69999999988888887644
No 223
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=81.42 E-value=0.5 Score=43.45 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHcCCccCCcEE
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNT-QRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQV 180 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~t-g~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I 180 (456)
.++++.. +.+...++|.++-+ +.+.+|.+....+. ...+|-.||+|.+.+.+.+.++.......-..|
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 3455554 33334445555544 67777766443322 356889999999999998887766544433333
No 224
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.34 E-value=1.1 Score=50.13 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=57.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C--ccCCcEEEEEEccCC
Q 035855 112 IFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H--DLNGKQVEVKRALPK 188 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~--~l~Gr~I~V~~a~~k 188 (456)
..+.|++...+-..|..+|.+||.|..++.++|-+ .|.|+|.+.+.+..|++.+. + .+.|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 35555566777888999999999999999988866 69999999887777776665 3 456788899998876
Q ss_pred CC
Q 035855 189 DA 190 (456)
Q Consensus 189 ~~ 190 (456)
+.
T Consensus 375 ~~ 376 (1007)
T KOG4574|consen 375 PM 376 (1007)
T ss_pred cc
Confidence 54
No 225
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.53 E-value=5.9 Score=41.50 Aligned_cols=67 Identities=15% Similarity=0.320 Sum_probs=55.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG 177 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G 177 (456)
...|+|--+|..+|-.||..|...|- .|.+|+|++|..-.+. .+.|.|.+.++|+...+..+ +.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry--mvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY--MVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE--EEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999987764 5899999997654443 68999999999998887766 65554
No 226
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=79.14 E-value=1.2 Score=45.90 Aligned_cols=61 Identities=21% Similarity=0.138 Sum_probs=53.2
Q ss_pred CcEEEEcCCCccCcHH--------HHHHHHhc--CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEE--------RLREYFSQ--YGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee--------~L~e~F~~--~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
.|.+|+..+..+.+.+ +|.+.|.. ..++..+...++.....++|..|++|...+.+++.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5778888888876665 99999998 7888888888888788999999999999999999996
No 227
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=77.53 E-value=57 Score=30.55 Aligned_cols=145 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred EEEEcC--CCccCcHHHHHHHHh-cCCCeeEEEEeecCCCC-----------CcceEEEEEeCCHHHHHHHHHcCCcCCC
Q 035855 7 KLFIGG--ISWETSEERLREYFS-QYGDVLQTVVMREKTTG-----------RPRGFGFVVFADPSILDRVLQDKHSLDG 72 (456)
Q Consensus 7 ~LfVgn--LP~~vtee~L~e~F~-~~G~V~~v~i~~d~~tg-----------~srGfaFVeF~d~e~A~kAl~~~~~l~G 72 (456)
.+|... +| +|++||+.+-- +.. +..-.++.|--.+ .+++.++..=.+++.++...++...|.-
T Consensus 7 ~~F~~~~~~p--~TK~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~ 83 (187)
T COG2242 7 ELFERDEGGP--MTKEEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV 83 (187)
T ss_pred hhhccCCCCC--CcHHHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC
Confidence 366666 76 89999987653 332 2222233332211 2344555544455545444446666666
Q ss_pred ceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhc-CceeEEEEeecCCCCCcc
Q 035855 73 RTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAY-GHVTDVVIMYDQNTQRPR 151 (456)
Q Consensus 73 r~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~f-G~V~~v~i~~d~~tg~~r 151 (456)
..|+|......+.... ......|||++= .+.++|-+.+-.+ -.--++.+
T Consensus 84 ~n~~vv~g~Ap~~L~~-----------------~~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~---------- 133 (187)
T COG2242 84 DNLEVVEGDAPEALPD-----------------LPSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVA---------- 133 (187)
T ss_pred CcEEEEeccchHhhcC-----------------CCCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEE----------
Confidence 6666655433322211 013467999875 4444544444322 11111111
Q ss_pred eEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 152 GFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 152 GfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
-+|+.+++..+.++++++... ..++|..++.++
T Consensus 134 --naitlE~~~~a~~~~~~~g~~---ei~~v~is~~~~ 166 (187)
T COG2242 134 --NAITLETLAKALEALEQLGGR---EIVQVQISRGKP 166 (187)
T ss_pred --EeecHHHHHHHHHHHHHcCCc---eEEEEEeeccee
Confidence 345555555555555554432 556666655443
No 228
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.31 E-value=12 Score=29.19 Aligned_cols=56 Identities=16% Similarity=0.359 Sum_probs=30.8
Q ss_pred cCcHHHHHHHHhcCCC-----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 16 ETSEERLREYFSQYGD-----VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~-----V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.++..+|..++..... |-.+.|+.+ |+||+-... .|+++|+ +..++.+++|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788899999987643 445666543 788888755 5666666 455889999998864
No 229
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.02 E-value=4.3 Score=35.01 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=28.0
Q ss_pred EEEEcCCCcc---------CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 7 KLFIGGISWE---------TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPS 58 (456)
Q Consensus 7 ~LfVgnLP~~---------vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e 58 (456)
++.|-|+|.+ ++.++|++.|+.|.+++ ++.+..+. -.+++++|+|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 4567777654 36689999999999874 66666653 56799999997543
No 230
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=72.86 E-value=3.3 Score=46.41 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=57.8
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC----cCCCceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH----SLDGRTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~----~l~Gr~I~v~~a 80 (456)
+.+..+-|.+-.++-.-|..+|.+|++|+.++.+++.. .|.|+|.+.+.|..|++.++ .+.+-+.+|.++
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34556667777888999999999999999999998864 79999999999999988443 244556666666
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
+..+
T Consensus 372 k~~~ 375 (1007)
T KOG4574|consen 372 KTLP 375 (1007)
T ss_pred cccc
Confidence 5443
No 231
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=72.45 E-value=4 Score=37.68 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=37.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
.|++|.. |.+...++|.++-+ +.+..+.+.+... ...++|..||.|.+.+.|.++++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 3455555 22333344444444 5777776665432 23788999999999999999887
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.16 E-value=10 Score=37.75 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=61.3
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCC-------CCCcceEEEEEeCCHHHHHH----HHHH---
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQN-------TQRPRGFGFISFDTEDAVDR----VLQK--- 170 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~-------tg~~rGfAFV~F~s~eaa~a----al~~--- 170 (456)
....++.|.+.||..+++-.++...|.+|+.|+.|.++.+.. .........+.|-+++.+.. +|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999997761 12223468899977655432 3333
Q ss_pred cCCccCCcEEEEEEcc
Q 035855 171 TFHDLNGKQVEVKRAL 186 (456)
Q Consensus 171 ~~~~l~Gr~I~V~~a~ 186 (456)
..+.|+-..|.|.+..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 3367888888887754
No 233
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=71.17 E-value=37 Score=26.94 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-------cCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 112 IFVGGLPPTLTEDGFRQYFEA-------YGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~-------fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
|...+||..+|.++|.+...+ +-.|.-++-..+.+.+ +-||+.+=.++|+++++.++.+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~--k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDG--KIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCC--eEEEEEECCCHHHHHHHHHHcC
Confidence 566789988999998877654 3345555555554333 4477777789999999888765
No 234
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=70.96 E-value=7.1 Score=33.47 Aligned_cols=115 Identities=21% Similarity=0.291 Sum_probs=59.4
Q ss_pred CCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchhHHHhhhcc
Q 035855 13 ISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSREEQQFSAR 91 (456)
Q Consensus 13 LP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~~~~~~~~~ 91 (456)
||+-++ +|-++|+.-|.|.+++.+..-. | .+|.--|. ..+.++++ |.+-....... .+
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtqyp-------------d-ndal~~~~G~lE~vDg~-i~IGs~q~~~s----V~ 69 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQYP-------------D-NDALLYVHGTLEQVDGN-IRIGSGQTPAS----VR 69 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEeccC-------------C-chhhheeeeehhhccCc-EEEccCCCccc----EE
Confidence 555544 5999999999998877665321 1 12222222 33455655 54432211100 00
Q ss_pred cCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHh---cCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 92 SGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEA---YGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~---fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
.... ..-..++| -|..+|-.+|+++|++ |--|++-.|.+|---.-+--.||..|...
T Consensus 70 i~gT----------Psgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 70 IQGT----------PSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred EecC----------CCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 0000 01223444 4788999999999975 33444444444421111222788888653
No 235
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=70.59 E-value=30 Score=35.21 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=27.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCC
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTT 43 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~t 43 (456)
..++|++-+-.|.--|.|++..+.-|.-..-.+.++-.|
T Consensus 81 ~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~T 119 (343)
T KOG2854|consen 81 GATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPT 119 (343)
T ss_pred CceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCC
Confidence 478999999988888888888888775444444444333
No 236
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.49 E-value=5.4 Score=30.99 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 20 ERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 20 e~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
++|++.|...| +|.++.-|..+.++++--.-||+++...+..++ -....|.++.|+|++...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i-~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI-YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce-eehHhhCCeEEEEecCCC
Confidence 56778888776 577888888877788888889998877663332 244567778888876643
No 237
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.36 E-value=5.9 Score=32.45 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHcC--CccCCcEEEEEE
Q 035855 154 GFISFDTEDAVDRVLQKTF--HDLNGKQVEVKR 184 (456)
Q Consensus 154 AFV~F~s~eaa~aal~~~~--~~l~Gr~I~V~~ 184 (456)
|+|+|++++.|+.++++.. ..++...++|+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999998877 566777766643
No 238
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.16 E-value=17 Score=29.45 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 116 GLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 116 nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
.++.+++..+|++.+++ |+ .|..|..+.-+.. .=-|||+|...+.|..+..++
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 36788999999999988 55 4677766544321 115999998766665554443
No 239
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.75 E-value=25 Score=27.22 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 119 ~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
..++-+|||..+.+|.. .+|..|+. + =||.|.+.++|++.....+ ..+-..+|.
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t-G-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT-G-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC-E-----EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 35788999999999864 23444443 2 5899999889999988776 555544443
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=66.61 E-value=21 Score=28.45 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=35.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 112 IFVGGLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal 168 (456)
-|+-.++.+++..+|++.+++ |+ .|..|..+.-+.. .=-|||++...+.|..+-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHH
Confidence 334446789999999999988 55 4666665544321 115999997654444443
No 241
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=66.55 E-value=23 Score=26.07 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=42.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
+|.|.+|.=.-....|++.+.+.--|.++.+-.... .+-|+|+. .+++.++|++..+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~------~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETK------TVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCC------EEEEEEecCCCCHHHHHHHHHHhCc
Confidence 467777877777888999999988888888855433 68899964 3778888877653
No 242
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.73 E-value=8.7 Score=38.61 Aligned_cols=33 Identities=21% Similarity=0.099 Sum_probs=24.7
Q ss_pred EEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 50 GFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 50 aFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
|||+|++.++|..|++..+..+.+.+.++.|.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCCC
Confidence 799999999999999955544455556665543
No 243
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.95 E-value=6.8 Score=36.28 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=46.7
Q ss_pred cEEEEcCCCCCCC-----HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCc-EEEE
Q 035855 110 KKIFVGGLPPTLT-----EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGK-QVEV 182 (456)
Q Consensus 110 ~~LfV~nLp~~~t-----eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr-~I~V 182 (456)
..|++.+|+.++- ..+.+.+|.+|-+.....+++ +..+.-|.|.+.+++..|..++. ..|+++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4466667765542 234556676666555444442 33467889999887777766666 899998 7777
Q ss_pred EEccC
Q 035855 183 KRALP 187 (456)
Q Consensus 183 ~~a~~ 187 (456)
-++.+
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 66654
No 244
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.10 E-value=7.6 Score=30.26 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=44.4
Q ss_pred HHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 20 ERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 20 e~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
++|++.|++.| +|+.+..|..+.+..+--.-||+.....+... +-+...|.+++|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCcc
Confidence 46888888887 57788888887777777788888876644333 3345567888888876643
No 245
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=63.07 E-value=21 Score=29.60 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=39.0
Q ss_pred CccCcHHHHHHHHhcC--------CCeeEEEEeecC-----CCCCcce-EEEEEeCCHHHHHHHHHcCCcCCCceE
Q 035855 14 SWETSEERLREYFSQY--------GDVLQTVVMREK-----TTGRPRG-FGFVVFADPSILDRVLQDKHSLDGRTV 75 (456)
Q Consensus 14 P~~vtee~L~e~F~~~--------G~V~~v~i~~d~-----~tg~srG-faFVeF~d~e~A~kAl~~~~~l~Gr~I 75 (456)
.++++++++.++++++ ++|.++...-.+ -.+..+| |.++.|.-..++.+.|+....++...|
T Consensus 15 ~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e~Vl 90 (97)
T CHL00123 15 KPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDENVL 90 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCCCeE
Confidence 4678888888777655 455554432211 1345667 588889877788888876555655444
No 246
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=62.28 E-value=28 Score=29.61 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=44.4
Q ss_pred eEEEEEeCC------HHHHHHHHH-------cCC--cCCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEE
Q 035855 48 GFGFVVFAD------PSILDRVLQ-------DKH--SLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKI 112 (456)
Q Consensus 48 GfaFVeF~d------~e~A~kAl~-------~~~--~l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 112 (456)
.-|.|.|.| .+.|+.+|+ .++ +.+..++....+...+.....+.-.+.+.....-....++.+++
T Consensus 15 ~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tdsLRDf~nL~d~~P~LviLDip~r~~ 94 (116)
T cd03071 15 GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDSLRDYTNLPEAAPLLTILDMSARAK 94 (116)
T ss_pred CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHHHHHhcCCCccCceEEEEeccccce
Confidence 456777762 234555554 223 33444554444443333333222233322222222334677788
Q ss_pred EEcCCCCCCCHHHHHHHHHhc
Q 035855 113 FVGGLPPTLTEDGFRQYFEAY 133 (456)
Q Consensus 113 fV~nLp~~~teedL~~~F~~f 133 (456)
||... .++|.+.++++...|
T Consensus 95 ~v~~~-eeIT~e~~~~fv~~y 114 (116)
T cd03071 95 YVMDV-EEITPAIVEAFVSDF 114 (116)
T ss_pred EeCch-HhcCHHHHHHHHHHh
Confidence 88766 678888888888776
No 247
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=61.19 E-value=28 Score=36.23 Aligned_cols=36 Identities=17% Similarity=0.450 Sum_probs=28.2
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhcC----CCeeEEEEee
Q 035855 4 DQGKLFIGGISWE-TSEERLREYFSQY----GDVLQTVVMR 39 (456)
Q Consensus 4 ~~r~LfVgnLP~~-vtee~L~e~F~~~----G~V~~v~i~~ 39 (456)
...+|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 4578999999998 7888999999877 5566666654
No 248
>PF14893 PNMA: PNMA
Probab=60.62 E-value=7.2 Score=39.81 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=33.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhc-CCCeeEEEEeec---CCCCCcceEEEEEeCCHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQ-YGDVLQTVVMRE---KTTGRPRGFGFVVFADPS 58 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~-~G~V~~v~i~~d---~~tg~srGfaFVeF~d~e 58 (456)
++-|.|.+||.+|++++|++.+.. +-++-..+|+.. +.. ..--++|||.+.-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccccc
Confidence 567999999999999999999874 222223333221 111 1236888887543
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.12 E-value=9.5 Score=38.33 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=27.3
Q ss_pred EEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCCC
Q 035855 154 GFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 154 AFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~~ 190 (456)
|||+|+++++|+.+++... ..+.+.++|+.|-++++
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCccc
Confidence 7999999999999998664 33446668887776654
No 250
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.31 E-value=8 Score=38.23 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=36.6
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPS 58 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e 58 (456)
..|+|+|||.++...+|+..+.+.+.+. ..|. +.-.++-||+.|-+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~is----wkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSIS----WKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEe----eecCCcceeEecCCcc
Confidence 5699999999999999999999876542 2232 3345678999997654
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=54.77 E-value=9.5 Score=36.77 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTV 36 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~ 36 (456)
|..+.+.||+-|||..+|++.|.++....+.|..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 456678999999999999999999999998665443
No 252
>PHA00019 IV phage assembly protein
Probab=53.55 E-value=88 Score=33.03 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCccCcHHHHHHHHhcCCCeeEEEEeecCC
Q 035855 13 ISWETSEERLREYFSQYGDVLQTVVMREKT 42 (456)
Q Consensus 13 LP~~vtee~L~e~F~~~G~V~~v~i~~d~~ 42 (456)
+|-++.+.+|+++|+-++++....++.++.
T Consensus 24 ~~l~f~~~dI~~vl~~la~~~g~NiVidp~ 53 (428)
T PHA00019 24 LPVELNNSPIREFVSWYSQQTGKSVVLGPD 53 (428)
T ss_pred eEEEecCCCHHHHHHHHHHhcCceEEECCC
Confidence 344666778999999888888888888765
No 253
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=53.26 E-value=92 Score=23.18 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 035855 122 TEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFH 173 (456)
Q Consensus 122 teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~ 173 (456)
.-.+|-++|.+.+ .|+.+.+....+ +.+.-|.+++.+.+.++|+..+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCC
Confidence 4567888888877 577777654322 35566667778788888887654
No 254
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=51.90 E-value=1.6e+02 Score=30.29 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCcc----CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 4 DQGKLFIGGISWE----TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL 64 (456)
Q Consensus 4 ~~r~LfVgnLP~~----vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl 64 (456)
+.+-|||-|=..- ++.++|+++.+.... .+.|+.|. ||+||.. +++...+
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDE--------AY~eF~~-~~~~~l~ 198 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDE--------AYIEFSP-ESSLELL 198 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeC--------chhhcCC-chhhhhc
Confidence 3456788764322 689999999998776 44455553 8999999 4444443
No 255
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=50.12 E-value=2.5e+02 Score=30.46 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=42.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
...+||--++|+ ..-.|++++...++-.+|.+..-++.++..|-+.|-|+. .+.+++.|+.++
T Consensus 417 ~~e~~~~~~fpe--rpgaL~~Fl~~l~~~~~It~f~Yr~~~~~~g~~l~gi~~~~~~~~~~~~~~~~~~ 483 (499)
T TIGR01124 417 ENERLYSFEFPE--RPGALLRFLNTLQGYWNISLFHYRNHGADYGRVLAGFQVPDHEPDQFEQFLAELG 483 (499)
T ss_pred CCceEEEEeCCC--CccHHHHHHHhcCCCCceeeEEEecCCcccCCEEEEEecCchhHHHHHHHHHHcC
Confidence 335677666765 345799999988877777766556677888888888854 234444455544
No 256
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=49.69 E-value=55 Score=32.27 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=34.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
-...|+|||+.+|..-|..+++..-.+..+++|. ..|.|++...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~----------------QkEva~Rl~A 139 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV----------------QKEVAERLVA 139 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEe----------------HHHHHHHHhC
Confidence 4678999999999999999998765554555554 4677777776
No 257
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.20 E-value=35 Score=26.06 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCeeEEEEe
Q 035855 19 EERLREYFSQYGDVLQTVVM 38 (456)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~ 38 (456)
.++|+++|++.|+|.-+-|-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999998655543
No 258
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=47.63 E-value=2.1e+02 Score=30.91 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=40.8
Q ss_pred EEEcCCCccCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC
Q 035855 8 LFIGGISWETSEERLREYFS----QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~----~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~ 67 (456)
|-++.-..+.+.-+|..+|. .+|.|.++.+...+.. +.+...++.|.+.++|.+++...
T Consensus 192 ~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p-~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 192 LTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKP-PVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred EEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCC-cceEEEEEECCCHHHHHHHHHHH
Confidence 44443323334557777776 6788998888776643 44567789999999999998753
No 259
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=46.82 E-value=1.5e+02 Score=23.64 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 116 GLPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 116 nLp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
-+|..+.-+||+.-. ..||...++..+.+ .-.|-..+.+++++|++.++..-.-+.|+|-.
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL 76 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRILL 76 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEeE
Confidence 366777777877655 56898877777644 25677899999999999998655556655543
No 260
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=46.76 E-value=94 Score=34.68 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=35.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFV-VFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFV-eF~d~e~A~kAl~ 65 (456)
.++|.|..||+.++.+.|.+.+.+. +.++ +.-++|..+ + ...|| +++....++..+.
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~-~--~v~i~i~l~~~~~~~~~~~ 280 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTA-E--NVEIEIKLPRGVYASEVIE 280 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCC-C--cEEEEEEECCCCCHHHHHH
Confidence 4789999999999999999876643 3443 444555433 2 34444 3444445555554
No 261
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=46.73 E-value=43 Score=30.13 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=40.2
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcC----CC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQY----GD-VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~----G~-V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~ 68 (456)
|+.++.++||-..-.. .|+.+.+.+.+. +. |.+|.+.. ...||.||+....+++..++++..
T Consensus 1 ~~~~~~~WYvv~t~sG-~E~~V~~~L~~~~~~~~~~i~~i~vp~-----~fpGYVfVe~~~~~~~~~~i~~v~ 67 (153)
T PRK08559 1 MKPEMSMIFAVKTTAG-QERNVALMLAMRAKKENLPIYAILAPP-----ELKGYVLVEAESKGAVEEAIRGIP 67 (153)
T ss_pred CCCCCCcEEEEEeECC-hHHHHHHHHHHHHHhCCCcEEEEEccC-----CCCcEEEEEEEChHHHHHHHhcCC
Confidence 6777888888755222 255566555432 21 44444433 267999999998888888887543
No 262
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=46.64 E-value=42 Score=35.24 Aligned_cols=142 Identities=8% Similarity=0.041 Sum_probs=67.5
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC--CHHHHHHHHHcCC----cCCCceEEEEecchhHHHhhh
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA--DPSILDRVLQDKH----SLDGRTVEAKRAMSREEQQFS 89 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~--d~e~A~kAl~~~~----~l~Gr~I~v~~a~~~~~~~~~ 89 (456)
++.+.+|+++|+.+.....+.|+.++.- .+..-+.|. +.++|-.+|-..+ ++++..|.|....+...+...
T Consensus 7 ~~~~~~l~dvL~~la~~~g~NiVi~~~V---~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~~~~~~~~~ 83 (418)
T TIGR02515 7 NFQDIPVRTVLQVIAEFTNLNIVVSDSV---QGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLDELAAQEKD 83 (418)
T ss_pred EEeCCCHHHHHHHHHHHhCCeEEECCCC---cceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHHHHHHHHHH
Confidence 3445567777777666666666665532 244556665 3344444443222 356777777655432211100
Q ss_pred cccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhc-----Cce-eEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 90 ARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAY-----GHV-TDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~f-----G~V-~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
....... .........+.+.+. .++-++|.++.+.+ ..+ ...+|..|..++ .+|...+++.
T Consensus 84 ~~~~~~~----~~~~~~l~t~~f~l~----y~~a~~v~~~l~~~~~~~~~~l~~~~~v~~d~~~n-----~lvv~~~~~~ 150 (418)
T TIGR02515 84 ELEAKKQ----IENLEPLQTELIQLN----YAKASDIAKVLTGDDGGKGSLLSPRGSVTVDPRTN-----TLIVTDIPEN 150 (418)
T ss_pred HHHHHhh----hhhccCcEEEEEEEe----CCcHHHHHHHHhhcccccccccCCCeeEEEECCcC-----eEEEEeCHHH
Confidence 0000000 000011223333343 34677788777654 111 223455565543 5666666555
Q ss_pred HH---HHHHHcCC
Q 035855 164 VD---RVLQKTFH 173 (456)
Q Consensus 164 a~---aal~~~~~ 173 (456)
++ +.|+.+++
T Consensus 151 ~~~i~~~i~~lD~ 163 (418)
T TIGR02515 151 LARIRKLIAELDI 163 (418)
T ss_pred HHHHHHHHHHhCC
Confidence 44 44555554
No 263
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=46.43 E-value=1.5e+02 Score=23.49 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=38.7
Q ss_pred EEEcCCCccCcHHHHHHHHhcC-------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 8 LFIGGISWETSEERLREYFSQY-------GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~-------G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
|-..+||..+|.++|.++..+- ..|.-++-..+. ...|-||+.+=.|+|+++++-+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~ 65 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHAR 65 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHH
Confidence 5567899889999999887643 234333333332 2346788888899998888776
No 264
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=46.33 E-value=7.7 Score=40.11 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred cccEEEEcCCCCCCCH--------HHHHHHHHh--cCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 108 RTKKIFVGGLPPTLTE--------DGFRQYFEA--YGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 108 ~~~~LfV~nLp~~~te--------edL~~~F~~--fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
..+.+|+..+..+.+. ++|+..|.. +.++..|...+|.....++|..|++|...+.+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3456777777766554 499999988 6778888888888778889999999999999999884
No 265
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=46.09 E-value=53 Score=30.59 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCceeEEEE
Q 035855 124 DGFRQYFEAYGHVTDVVI 141 (456)
Q Consensus 124 edL~~~F~~fG~V~~v~i 141 (456)
++|-++=|-|+.|.++.+
T Consensus 89 ~qIGKVDEIfG~i~d~~f 106 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVHF 106 (215)
T ss_pred hhhcchhhhcccccccEE
Confidence 344333344566666554
No 266
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=45.61 E-value=2.2e+02 Score=30.85 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=27.6
Q ss_pred ccCcHHHHHHHHhcCCCeeEEEEeec--CCCCCcceEEEEEeC
Q 035855 15 WETSEERLREYFSQYGDVLQTVVMRE--KTTGRPRGFGFVVFA 55 (456)
Q Consensus 15 ~~vtee~L~e~F~~~G~V~~v~i~~d--~~tg~srGfaFVeF~ 55 (456)
..+..++|++.+.++..|.++.|+-. .........++|.+.
T Consensus 470 ~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~ 512 (600)
T PRK08279 470 ENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLA 512 (600)
T ss_pred cccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEec
Confidence 35788999999999999999887532 222223445666554
No 267
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=45.39 E-value=2.7e+02 Score=28.69 Aligned_cols=9 Identities=11% Similarity=-0.119 Sum_probs=3.9
Q ss_pred CCHHHHHHH
Q 035855 121 LTEDGFRQY 129 (456)
Q Consensus 121 ~teedL~~~ 129 (456)
+++++|+.+
T Consensus 198 a~w~~iE~~ 206 (465)
T KOG3973|consen 198 ATWPEIEKQ 206 (465)
T ss_pred hhHHHHHHH
Confidence 344444433
No 268
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.10 E-value=3.3 Score=44.33 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=49.1
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA---DPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~---d~e~A~kAl~ 65 (456)
.|+|||.||++.++-++|..+++.+--+..+.+.......+..-+.+|+|+ +...|.-||.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 578999999999999999999999988888777766656677778899996 4445555554
No 269
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=43.46 E-value=1.3e+02 Score=26.51 Aligned_cols=122 Identities=14% Similarity=0.068 Sum_probs=49.8
Q ss_pred EEEEcCCC----ccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 7 KLFIGGIS----WETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVV-FADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 7 ~LfVgnLP----~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVe-F~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
-+|+.+|. ..+.-.+|+++|++.|- .+++-... + |-.+++ =.+.++.+..|+ ...+..+..+.|..-
T Consensus 5 iaLLRGINVGG~nki~MaeLr~~l~~~Gf-~~V~Tyi~--S----GNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vr 77 (137)
T PF08002_consen 5 IALLRGINVGGKNKIKMAELREALEDLGF-TNVRTYIQ--S----GNVVFESDRDPAELAAKIEKALEERFGFDVPVIVR 77 (137)
T ss_dssp EEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEE
T ss_pred EEEEcceecCCCCcccHHHHHHHHHHcCC-CCceEEEe--e----CCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 35667663 34789999999999984 45543332 2 333333 223334444444 222333333333222
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEe
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIM 142 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~ 142 (456)
...+-.......+.... ...+.++++|.=|....+.+++.++-..-...+.+.+.
T Consensus 78 s~~el~~i~~~nPf~~~-------~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 78 SAEELRAIIAANPFPWE-------AEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EHHHHHHHHTT--GGGG-------S----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred eHHHHHHHHHHCCCccc-------ccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 22222221111110000 01245677777777888888888876654444555553
No 270
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=43.07 E-value=1.7e+02 Score=23.28 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=35.0
Q ss_pred EEcCCCCCCCHHHHHHHH-------HhcCceeEEEEeecCCCCC-cce---EEEEEeCCHHHHHHHH
Q 035855 113 FVGGLPPTLTEDGFRQYF-------EAYGHVTDVVIMYDQNTQR-PRG---FGFISFDTEDAVDRVL 168 (456)
Q Consensus 113 fV~nLp~~~teedL~~~F-------~~fG~V~~v~i~~d~~tg~-~rG---fAFV~F~s~eaa~aal 168 (456)
.+-.|.++++++++++++ .+.-.|+.+.+-++..... .++ .-+++|+++++.++-+
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 334577888888775544 3344677777766544332 222 3567889998877654
No 271
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=42.91 E-value=62 Score=34.49 Aligned_cols=60 Identities=13% Similarity=0.335 Sum_probs=35.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVV-FADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVe-F~d~e~A~kAl~ 65 (456)
.++|-|..||..++.++|++.+... ..|..+.-++|..+ ...+..||. ++....++..++
T Consensus 232 ~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~-~~~~vrivI~lk~~~~~~~~~~ 295 (445)
T smart00434 232 RNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESH-DRTGVRIVIELKRGAMAEVVLN 295 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccC-CCCceEEEEEECCCcCHHHHHH
Confidence 3689999999999999999887642 33444444444321 223455554 444434444433
No 272
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=42.60 E-value=1.6e+02 Score=22.71 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=43.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
..+|+|.++.=.-....+++.+++..-|..+++-.+.. .++|+|++ .+++..|++..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~------~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKG------TATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccC------eEEEEEcCCcCCHHHHHHHHHHcC
Confidence 35788888877767788999998887788888866543 49999976 456666666654
No 273
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=42.06 E-value=8.6 Score=31.90 Aligned_cols=51 Identities=18% Similarity=0.349 Sum_probs=30.0
Q ss_pred EcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHcC
Q 035855 114 VGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT-EDAVDRVLQKTF 172 (456)
Q Consensus 114 V~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s-~eaa~aal~~~~ 172 (456)
|..||+.++.+.||+..-+ ..+-.+|++.+.+ |||+|+. .+.++.+|++..
T Consensus 26 l~~LP~la~S~~~KD~I~q-----~m~~F~dp~~G~p---AF~s~~QQ~~mlq~~l~k~~ 77 (120)
T PRK15321 26 LLALPESASSETLKDSIYQ-----EMNAFKDPNSGDS---AFVSFEQQTAMLQNMLAKVE 77 (120)
T ss_pred HHhCCcccCcHHHHHHHHH-----HHHHhCCCCCCCc---ccccHHHHHHHHHHHHHhcC
Confidence 4567777776666654322 1222345555664 9999977 455566666544
No 274
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.04 E-value=96 Score=27.95 Aligned_cols=59 Identities=29% Similarity=0.317 Sum_probs=41.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCC---------CCCcce-EEEEEeCCHHHH
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKT---------TGRPRG-FGFVVFADPSIL 60 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~---------tg~srG-faFVeF~d~e~A 60 (456)
..|+.+|++..++..++|++.++..++- .+++++.+-+.+. +..-|. |-+|.|++-+..
T Consensus 84 pkd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 84 PKDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred cCCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 4566899999999999999999999864 4555555544332 123344 888889876543
No 275
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=41.32 E-value=98 Score=34.02 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=40.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCcc-CCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDL-NGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l-~Gr~I~V~~a~ 186 (456)
..-+|.-+||.++ |.|.++.-+.. +-.+.+|-| +.|+++|++.+|+.....+| .+..|.|...-
T Consensus 372 Ggl~vL~GNLaP~-------------GaViK~sav~~-~~~~~~G~A-~VF~see~a~~ai~~g~i~i~~gdVvVIRyeG 436 (571)
T PRK06131 372 GGIAVLRGNLAPD-------------GAVIKPSAASP-ELLKHEGRA-VVFEGYEDYKARIDDPDLDVDEDTVLVLRNAG 436 (571)
T ss_pred CCeEEeecCCCCC-------------CceeeecccCc-cccEEEeee-EEECCHHHHHHHHhCCCcCCCCCeEEEEeCCC
Confidence 3456677788654 33444432211 113345545 56999999999998766433 56777777766
Q ss_pred CCC
Q 035855 187 PKD 189 (456)
Q Consensus 187 ~k~ 189 (456)
||.
T Consensus 437 PkG 439 (571)
T PRK06131 437 PKG 439 (571)
T ss_pred CCC
Confidence 654
No 276
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=41.11 E-value=1.4e+02 Score=24.61 Aligned_cols=68 Identities=16% Similarity=0.324 Sum_probs=34.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhc--------CceeEEEEeecC-----CCCCcce-EEEEEeCCHHHHHHHHHHcCCcc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAY--------GHVTDVVIMYDQ-----NTQRPRG-FGFISFDTEDAVDRVLQKTFHDL 175 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~f--------G~V~~v~i~~d~-----~tg~~rG-fAFV~F~s~eaa~aal~~~~~~l 175 (456)
.++|| |.+++++++++++.+++ |+|.++...-.+ -....+| |.++.|+-..++-+.++.. ..+
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~-lri 85 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA-LKL 85 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH-hCC
Confidence 34555 56777787777665544 356555432111 1133455 6888886543333333332 234
Q ss_pred CCcEE
Q 035855 176 NGKQV 180 (456)
Q Consensus 176 ~Gr~I 180 (456)
+...|
T Consensus 86 ~e~Vl 90 (97)
T CHL00123 86 DENVL 90 (97)
T ss_pred CCCeE
Confidence 44443
No 277
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=40.85 E-value=24 Score=34.11 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=29.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVI 141 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i 141 (456)
...++||+-|||..+|++.|+++.++++.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35678999999999999999999999986655443
No 278
>PF14893 PNMA: PNMA
Probab=40.54 E-value=30 Score=35.34 Aligned_cols=53 Identities=11% Similarity=0.328 Sum_probs=33.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHh-cCceeEEEEe---ecCCCCCcceEEEEEeCCH
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEA-YGHVTDVVIM---YDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~-fG~V~~v~i~---~d~~tg~~rGfAFV~F~s~ 161 (456)
...+.|.|.+||.++++++|++.+.. +-.+-..+|. ..++.+ .+ .|+|+|.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~-~~-aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREEN-AK-AALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcc-cc-eeeeecccc
Confidence 35578999999999999999988764 2222233332 112111 11 689998553
No 279
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=40.33 E-value=2e+02 Score=29.61 Aligned_cols=6 Identities=0% Similarity=0.179 Sum_probs=2.6
Q ss_pred HHHHHH
Q 035855 125 GFRQYF 130 (456)
Q Consensus 125 dL~~~F 130 (456)
+|.++|
T Consensus 244 ei~~~~ 249 (465)
T KOG3973|consen 244 EIQSIL 249 (465)
T ss_pred HHHHHH
Confidence 444444
No 280
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=39.88 E-value=2.5e+02 Score=26.46 Aligned_cols=73 Identities=15% Similarity=0.282 Sum_probs=45.6
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCC-CceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccc
Q 035855 31 DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLD-GRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRT 109 (456)
Q Consensus 31 ~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~-Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (456)
.+.-+.+++++ +.|.+.++|.+.|++..+|+ .-.|.+....+.-. ..+
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~VN---------------------E~T 84 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSVN---------------------EQT 84 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHHhcchheeeeEEEecCCcccc---------------------ccc
Confidence 35566777776 67999999999999655554 34455544433221 245
Q ss_pred cEEEEcCCCCC--------CCHHHHHHHHHhcC
Q 035855 110 KKIFVGGLPPT--------LTEDGFRQYFEAYG 134 (456)
Q Consensus 110 ~~LfV~nLp~~--------~teedL~~~F~~fG 134 (456)
++|||--+.-. -.+|.|.+..++|-
T Consensus 85 kkIYICPFTGKVF~DNt~~nPQDAIYDWvSkCP 117 (238)
T PF10915_consen 85 KKIYICPFTGKVFGDNTHPNPQDAIYDWVSKCP 117 (238)
T ss_pred ceEEEcCCcCccccCCCCCChHHHHHHHHhhCC
Confidence 66666543321 14577889988875
No 281
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=39.20 E-value=1.6e+02 Score=22.74 Aligned_cols=62 Identities=11% Similarity=0.315 Sum_probs=38.9
Q ss_pred EcCCCCCCCHHHHHHHHH-hcCce-eEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEE
Q 035855 114 VGGLPPTLTEDGFRQYFE-AYGHV-TDVVIM-YDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182 (456)
Q Consensus 114 V~nLp~~~teedL~~~F~-~fG~V-~~v~i~-~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V 182 (456)
.-.|+..++-++|++... +|... ..+.|. +|.+ + -+|+..+.++++.|++.... ...+.|+|
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Ded-g-----d~v~l~sd~Dl~~a~~~~~~-~~~~~l~l 78 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDED-G-----DLVSLTSDEDLEEAIEEYDS-LGSKKLRL 78 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCC-C-----CEEEecCHHHHHHHHHHHHH-cCCceEEE
Confidence 334677899999887764 45532 244443 3433 2 38999999999999987742 12344444
No 282
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=39.05 E-value=22 Score=39.36 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=39.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCC---------------cceEEEEEeCCHHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQR---------------PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~---------------~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
+..+|-|. |.++++++||.++|.-|..-..++++.+..+.. -+--.|-.+.+|..+.+-|+++.
T Consensus 453 ed~tigvs-lDETv~~~DvddLl~vf~~~ss~~~~~E~~~~e~~~~~~s~f~Rts~~L~hpVFn~yhSEt~lvRYm~kLe 531 (1001)
T KOG2040|consen 453 EDGTIGVS-LDETVTEKDVDDLLWVFNEESSVELVAESMGEECNGIPPSVFKRTSPYLTHPVFNSYHSETELVRYMKKLE 531 (1001)
T ss_pred ecCceEEe-ecccccHHHHHHHHHHHccCChHHHHHHhhhhhccCCCCcccccCCccccchhhhhcccHHHHHHHHHHhh
Confidence 44556664 889999999999999887433222221111110 11236667788888888877665
No 283
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=38.87 E-value=80 Score=34.55 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=25.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 150 PRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 150 ~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
++|-| +.|++++++.+++..... -.+..|.|...-||.
T Consensus 397 ~~GpA-~VF~see~a~~ai~~g~I-~~gdVvViRyeGPkG 434 (552)
T PRK00911 397 FTGPA-RVFDSEEEAMEAILAGKI-KAGDVVVIRYEGPKG 434 (552)
T ss_pred eeeeE-EEECCHHHHHHHHhcCCC-CCCeEEEEeCCCCCC
Confidence 44544 679999999999987543 345577777666654
No 284
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.63 E-value=1.2e+02 Score=28.93 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=15.2
Q ss_pred eEEEEEeCCHHHHHHHHHcCC
Q 035855 48 GFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 48 GfaFVeF~d~e~A~kAl~~~~ 68 (456)
.+.+|...+.+.++.+++...
T Consensus 97 ~~~~v~~d~~~~g~~~~~~l~ 117 (272)
T cd06313 97 VHSFLAPDNYFMGASVAQALC 117 (272)
T ss_pred eEEEECCCcHHHHHHHHHHHH
Confidence 356788888888888777433
No 285
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=38.13 E-value=29 Score=38.50 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=67.8
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecchhHHHhhhcccCCC
Q 035855 17 TSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMSREEQQFSARSGNT 95 (456)
Q Consensus 17 vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~~~~~~~~~~~~~~ 95 (456)
+...||+..+..+..|.++-++-.++ .+-..=+|||++++.......|+ ++.....+..
T Consensus 508 igtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~------------------kel~~~VR~~-- 567 (626)
T KOG1175|consen 508 IGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLT------------------KELVKHVRSV-- 567 (626)
T ss_pred ecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHH------------------HHHHHHHHhh--
Confidence 57789999999999999988876543 22334578888876532222222 0000000000
Q ss_pred CCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 035855 96 NSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170 (456)
Q Consensus 96 ~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~ 170 (456)
-.....+.+.+||.+||++.+-..+|+++.+.= .-+-+.|. =++.+++.++.+++.
T Consensus 568 ------igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~---~g~~~~d~----------st~~dp~v~~~~~~~ 623 (626)
T KOG1175|consen 568 ------IGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIA---SGKAVGDT----------STLADPSVIDHLRSI 623 (626)
T ss_pred ------cCcccccceeEecCCCCccccchhHHHHHHHHh---ccCccccc----------cccCChHHHHHHHHh
Confidence 011124678899999999999888888777631 11122221 256677766666654
No 286
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=37.78 E-value=91 Score=26.36 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=31.6
Q ss_pred CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 122 TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 122 teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
-+.+|.+++++.| |.+-.|..|..+.. =|++++++|.++..++|...
T Consensus 25 vWPE~~a~lk~ag-i~nYSIfLde~~n~--lFgy~E~~d~~a~m~~~a~~ 71 (105)
T COG3254 25 VWPELLALLKEAG-IRNYSIFLDEEENL--LFGYWEYEDFEADMAKMAET 71 (105)
T ss_pred ccHHHHHHHHHcC-CceeEEEecCCccc--EEEEEEEcChHHHHHHHhCC
Confidence 3568888898887 55566665654333 39999999766666655443
No 287
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=37.33 E-value=1.1e+02 Score=32.73 Aligned_cols=58 Identities=16% Similarity=0.367 Sum_probs=35.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVV-FADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVe-F~d~e~A~kAl~ 65 (456)
++|.|..||..++.++|++.+... ..+..+.-++|..+. .+..||. ++....++..++
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHH
Confidence 689999999999999999877643 223333344444332 2566654 444444444443
No 288
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=37.11 E-value=68 Score=27.73 Aligned_cols=50 Identities=16% Similarity=0.420 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHh-cCceeEEEEeecC----CCCCcceEEEEEeCCHHHHHHHHH
Q 035855 119 PTLTEDGFRQYFEA-YGHVTDVVIMYDQ----NTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 119 ~~~teedL~~~F~~-fG~V~~v~i~~d~----~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
.+++.+||++-+.+ |-.-.++.++.+. -.+++.|||.| |++.|.+++...
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkfEp 87 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKFEP 87 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhcCc
Confidence 45788888887754 6555555555443 34678889976 677777665543
No 289
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=37.11 E-value=3.7e+02 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=25.0
Q ss_pred EEEcCCCcc--CcHHHHHHHHhcCCCee----EEEEeecCCCCCcceEEEEEeC
Q 035855 8 LFIGGISWE--TSEERLREYFSQYGDVL----QTVVMREKTTGRPRGFGFVVFA 55 (456)
Q Consensus 8 LfVgnLP~~--vtee~L~e~F~~~G~V~----~v~i~~d~~tg~srGfaFVeF~ 55 (456)
|+|--|-.+ =|..+|+.+|++++-.. .+..+.++ .+.|+|.
T Consensus 97 iiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 97 IIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred EEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 444444333 36789999999986432 24555554 4667774
No 290
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.95 E-value=1.8e+02 Score=30.29 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCccCcHHHHHHHHhcC-------------CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC----CcCCCce
Q 035855 12 GISWETSEERLREYFSQY-------------GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK----HSLDGRT 74 (456)
Q Consensus 12 nLP~~vtee~L~e~F~~~-------------G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~----~~l~Gr~ 74 (456)
+|..++|.+||.+.+..+ ..|.+|++|-. |--+.-|+....+.+.|.+. ..|..+.
T Consensus 144 g~~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGm-------GEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ 216 (373)
T PRK14459 144 GLTRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGM-------GEPLANYKRVVAAVRRITAPAPEGLGISARN 216 (373)
T ss_pred CCCCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecC-------CcchhhHHHHHHHHHHHhCcccccCCccCCE
Confidence 345566766666554321 23666666541 12234344444444444441 3455567
Q ss_pred EEEEec
Q 035855 75 VEAKRA 80 (456)
Q Consensus 75 I~v~~a 80 (456)
|.|.-.
T Consensus 217 ITvST~ 222 (373)
T PRK14459 217 VTVSTV 222 (373)
T ss_pred EEEECc
Confidence 777655
No 291
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=36.75 E-value=2.4e+02 Score=28.98 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.4
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~ 67 (456)
++++++|+.+++.|+.....++++.. .+.++...||...
T Consensus 198 ~~d~~~ir~iL~Ey~I~nA~V~Ir~d-------------vTlDd~id~l~~n 236 (365)
T COG1163 198 HLDEDTVRAILREYRIHNADVLIRED-------------VTLDDLIDALEGN 236 (365)
T ss_pred cCCHHHHHHHHHHhCcccceEEEecC-------------CcHHHHHHHHhhc
Confidence 48999999999999877655555543 2567777777643
No 292
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=36.62 E-value=1.5e+02 Score=24.75 Aligned_cols=50 Identities=14% Similarity=0.357 Sum_probs=31.1
Q ss_pred CCCHHHHHHHH-HhcCceeEEEEeecCCC----CCcceEEEEEeCCHHHHHHHHHH
Q 035855 120 TLTEDGFRQYF-EAYGHVTDVVIMYDQNT----QRPRGFGFISFDTEDAVDRVLQK 170 (456)
Q Consensus 120 ~~teedL~~~F-~~fG~V~~v~i~~d~~t----g~~rGfAFV~F~s~eaa~aal~~ 170 (456)
+.+..||++.+ +.|..-.+..|+..-.| ++++|||.| |++++++++.-.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~Epk 84 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKIEPK 84 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhhCch
Confidence 56777877666 45775445555544433 456677765 6888887776543
No 293
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.62 E-value=6.3 Score=41.14 Aligned_cols=76 Identities=8% Similarity=-0.158 Sum_probs=51.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
.+.|+..|+..+++++|.-+|+.|+.|..+.+-+..+....+-.+||+-.+.++..-+-.+.-..+.+..++|..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeeccCcccccCHHHHhhhhhhhhhhhcC
Confidence 4568889999999999999999999999888765555455555788887654433322222224455555555544
No 294
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=36.47 E-value=4.4e+02 Score=26.15 Aligned_cols=143 Identities=9% Similarity=0.049 Sum_probs=59.5
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCC-----CCc--ceEEEEEeCCHHHHHHHHHcCCcCC---CceEEEEecchhHH
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTT-----GRP--RGFGFVVFADPSILDRVLQDKHSLD---GRTVEAKRAMSREE 85 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~t-----g~s--rGfaFVeF~d~e~A~kAl~~~~~l~---Gr~I~v~~a~~~~~ 85 (456)
-+++++|.+.++.. .-..|..+... ... .......|-++++|+++|++....+ ...++|........
T Consensus 62 AL~~~~V~~kL~~V---PVF~itn~~G~p~l~~~~~~~~~~v~~~F~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~v 138 (274)
T PF04278_consen 62 ALPEEEVEEKLAGV---PVFTITNSQGEPVLVSGPDQGGKSVGLFFFSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKV 138 (274)
T ss_dssp ---HHHHHHHHTTS---EEEEEE-TT--B-----TTS--SEEEEEES-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHH
T ss_pred cCCHHHHHHHhcCc---eEEEEECCCCCEEEeccCCCCCceEEEEEecHHHHHHHHHHHhhhCccccCceEEEEecHHHH
Confidence 35788999888753 22222211110 011 2344566789999999988432211 23344433333222
Q ss_pred HhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCce-eE---E--EEeec----CCCCCcceEEE
Q 035855 86 QQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHV-TD---V--VIMYD----QNTQRPRGFGF 155 (456)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V-~~---v--~i~~d----~~tg~~rGfAF 155 (456)
.+....... ....|...=+|....-+.-++++++-+.- ++ | -+.+. -...+...-..
T Consensus 139 Y~l~~~~~~-------------k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lti~~~~~~~i 205 (274)
T PF04278_consen 139 YQLAQENKK-------------KPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLTIKQDNKRII 205 (274)
T ss_dssp HHHHHHTTT--------------TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-EETTTTEEEE
T ss_pred HHHHHHhhc-------------CCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEEEeeCCeEEE
Confidence 222111100 22345444455554444455554443321 11 1 11111 00011122455
Q ss_pred EEeCCHHHHHHHHHHcCCc
Q 035855 156 ISFDTEDAVDRVLQKTFHD 174 (456)
Q Consensus 156 V~F~s~eaa~aal~~~~~~ 174 (456)
-.|-+.+++++++++..++
T Consensus 206 PlFF~kedL~~~l~k~~kq 224 (274)
T PF04278_consen 206 PLFFDKEDLQAALEKAKKQ 224 (274)
T ss_dssp EEESSHHHHHHHHHHHTTT
T ss_pred EEEecHHHHHHHHHHHHHh
Confidence 6677888888888777533
No 295
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=36.40 E-value=2.3e+02 Score=24.79 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=42.2
Q ss_pred EEEEcCCCCC---CCHHHHHHHHHhcCc-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCC-cEEEEEEc
Q 035855 111 KIFVGGLPPT---LTEDGFRQYFEAYGH-VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG-KQVEVKRA 185 (456)
Q Consensus 111 ~LfV~nLp~~---~teedL~~~F~~fG~-V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~G-r~I~V~~a 185 (456)
.|.|+..... .+.+++++++++-+. ++.+..-.+ ...|.|+++|+..+|.+.+...+.. -.|.+..+
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3555544222 566788888888773 444444322 5889999988888887777755644 34444443
No 296
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=35.70 E-value=77 Score=31.20 Aligned_cols=70 Identities=17% Similarity=0.088 Sum_probs=45.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEe--CCHHHHHHHHHHcCCccCC
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF--DTEDAVDRVLQKTFHDLNG 177 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F--~s~eaa~aal~~~~~~l~G 177 (456)
..-+++|.+-+++++.-.+.|++++..+-.|.--...++... ..+ ..-|.. ++++.++++++.....+.+
T Consensus 177 ~~~~~~~~~~gi~ES~la~~L~~i~~~~~~~~i~s~p~~~~~-~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~ 248 (255)
T COG1058 177 KYYSRVLRVFGIGESSLAPTLKDLQDEQPNVTIASYPKDGEV-RLR-ELVIRAEARDEEEADALLRWLEGRLRA 248 (255)
T ss_pred ceEEEEEEEcCCChHHHHHHHHHHHhcCCCCEEEecCCCCce-ecc-ceEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999988755443333333221 111 122555 6788888888776544433
No 297
>TIGR02517 type_II_gspD general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516).
Probab=35.63 E-value=3.1e+02 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=16.2
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHH---HHHcC
Q 035855 139 VVIMYDQNTQRPRGFGFISFDTEDAVDRV---LQKTF 172 (456)
Q Consensus 139 v~i~~d~~tg~~rGfAFV~F~s~eaa~aa---l~~~~ 172 (456)
++|..|+.++ +.|...+++..+++ |++++
T Consensus 295 ~~i~~d~~~n-----~liv~~~~~~~~~i~~~i~~lD 326 (594)
T TIGR02517 295 VSGSADKATN-----SLIITASPQDYKNIRAVIKQLD 326 (594)
T ss_pred eeEEEcCCcc-----EEEEEcCHHHHHHHHHHHHHhC
Confidence 4566665543 56666666555444 44444
No 298
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.56 E-value=1.4e+02 Score=27.43 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=39.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.+-| +|+..+.+|-|.++.+-+|.|.+. .+ + --.+.|-+.+.+++||+...
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee-~------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEF---EE-D------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEe---cC-C------cEEEEeccHHHHHHHHHHHH
Confidence 3444 589999999999999999987655 22 2 24678889999999997653
No 299
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=35.52 E-value=4.1e+02 Score=25.51 Aligned_cols=162 Identities=11% Similarity=0.129 Sum_probs=84.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHHHcCCcCC-----C
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGD-VLQTVVMREKT-------TGRPRGFGFVVFADPSILDRVLQDKHSLD-----G 72 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d~~-------tg~srGfaFVeF~d~e~A~kAl~~~~~l~-----G 72 (456)
.+|+|..-. -..+++.+.|++.|- +..+-++.... ......+.+|.|.+...++.+.+...... .
T Consensus 2 ~~vlvtR~~--~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~~~ 79 (248)
T COG1587 2 MRVLVTRPR--EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDALKN 79 (248)
T ss_pred cEEEEeCch--hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccccc
Confidence 356666543 567788889988875 32322222111 11222289999999999988877433322 4
Q ss_pred ceEEEEecchhHHHhhhcccCCCCCCCCC------CCCCcc--cccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEee
Q 035855 73 RTVEAKRAMSREEQQFSARSGNTNSGRSN------GGGGTI--RTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMY 143 (456)
Q Consensus 73 r~I~v~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~ 143 (456)
.+|.+.-....+.-+..-........... ...... ..+.|++. .+...+.|.+.....| .|..+.+..
T Consensus 80 ~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~---~~~~r~~l~~~L~~~G~~v~~~~~Y~ 156 (248)
T COG1587 80 KKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILR---GNGGREVLEEKLEERGAEVREVEVYR 156 (248)
T ss_pred CeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEc---CCCchHHHHHHHHhCCCEEEEEeeee
Confidence 44544333322222221100000000000 000011 23444443 3344477777777766 455565543
Q ss_pred cCCC----------CCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 144 DQNT----------QRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 144 d~~t----------g~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.... -+...+-.|.|.+...++..++...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~ 195 (248)
T COG1587 157 TEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAP 195 (248)
T ss_pred ecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHcc
Confidence 2211 1234578899999999999998876
No 300
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=35.23 E-value=35 Score=33.74 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=27.2
Q ss_pred cEEEEcCCCcc------------CcHHHHHHHHhcCCCeeEEEEee
Q 035855 6 GKLFIGGISWE------------TSEERLREYFSQYGDVLQTVVMR 39 (456)
Q Consensus 6 r~LfVgnLP~~------------vtee~L~e~F~~~G~V~~v~i~~ 39 (456)
.||++-.||-. -+|+.|+..|+.||+|..|.|..
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 57888888732 37899999999999999887754
No 301
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=35.22 E-value=92 Score=30.79 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=16.4
Q ss_pred EEcCCCccCcHHHHHHHHhcCC
Q 035855 9 FIGGISWETSEERLREYFSQYG 30 (456)
Q Consensus 9 fVgnLP~~vtee~L~e~F~~~G 30 (456)
-|-.||+++-+++|+..|+.+.
T Consensus 51 ~v~~v~~~~v~~Ql~av~~D~~ 72 (263)
T COG0351 51 GVHPVPPEFVEAQLDAVFSDIP 72 (263)
T ss_pred eEEeCCHHHHHHHHHHHhhcCC
Confidence 5667777888888888887764
No 302
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=34.89 E-value=1.7e+02 Score=29.02 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=58.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecchhH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~~~ 84 (456)
..|+|.+ -++|.++++.++|+.+. ..+.. .-...-+.|+-+ .+.+++.+|++...+...++.|..+.-..
T Consensus 29 ~~I~v~~----~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav-KPq~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 29 EEIIVTN----RSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV-KPQDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ceEEEeC----CCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe-ChHhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 4566664 45666777888887662 11110 001112444444 46777788775543444445555544333
Q ss_pred HHhhhcccCCCCCCCC--CCCCC-cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEE
Q 035855 85 EQQFSARSGNTNSGRS--NGGGG-TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV 140 (456)
Q Consensus 85 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~ 140 (456)
....+......+..+. +.... ..-...|+....-.....+.+.++|+.+|++..|.
T Consensus 100 ~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 100 IETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred HHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCeEEec
Confidence 3222222110000000 00000 01112233322222233345789999999988776
No 303
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=34.85 E-value=86 Score=32.62 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=34.3
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---cCC----cCCCceEEEEec
Q 035855 18 SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ---DKH----SLDGRTVEAKRA 80 (456)
Q Consensus 18 tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~---~~~----~l~Gr~I~v~~a 80 (456)
.+.+|+++|+.+.++....++.++.- +|..=+.+.+ -..++||+ ..+ ...+..+.|...
T Consensus 3 ~~adI~~vl~~la~~~g~NiVidp~V---~G~VTl~~~~-V~~~qal~~iL~~~gl~~~~~g~i~~I~p~ 68 (386)
T PRK10560 3 DDVPVAQVLQALAEQEKLNLVVSPDV---SGTVSLHLTD-VPWKQALQTVVKSAGLILRQEGNILSVHSQ 68 (386)
T ss_pred cCCCHHHHHHHHHHhcCceEEECCCC---cceEEEEEeC-CCHHHHHHHHHHhCCCcEEEeCCEEEEEch
Confidence 45578888888888888888877652 3555555543 23444444 221 234566666544
No 304
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.18 E-value=5.6 Score=42.67 Aligned_cols=54 Identities=6% Similarity=0.092 Sum_probs=41.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
..++.|||.|++++++-++|..+++.+--+.++.+-.+....+..-+.+|+|+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~ 282 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKR 282 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhcc
Confidence 456789999999999999999999987766666655444444455578999965
No 305
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.82 E-value=86 Score=23.98 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCceeEEEE
Q 035855 124 DGFRQYFEAYGHVTDVVI 141 (456)
Q Consensus 124 edL~~~F~~fG~V~~v~i 141 (456)
++|+++|++.|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999875444
No 306
>PRK07868 acyl-CoA synthetase; Validated
Probab=33.44 E-value=4.3e+02 Score=31.16 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=33.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA 55 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~ 55 (456)
..|-+++- .+..+||++++.++..|.++.|+-.+.....+-.+||+.+
T Consensus 860 d~Ik~~G~--~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~ 907 (994)
T PRK07868 860 SVIRTARG--PVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLR 907 (994)
T ss_pred CEEEeCCc--eEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeC
Confidence 34444443 3788999999999999999888765443334457788764
No 307
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=33.31 E-value=2.4e+02 Score=27.65 Aligned_cols=77 Identities=9% Similarity=0.210 Sum_probs=44.7
Q ss_pred cccEEEEcCCCCCCC--HHHHHHHHHhcCceeEEEE--eecCCCCCcceEEE-EEeCCHHHHHHHHHHcC-----CccCC
Q 035855 108 RTKKIFVGGLPPTLT--EDGFRQYFEAYGHVTDVVI--MYDQNTQRPRGFGF-ISFDTEDAVDRVLQKTF-----HDLNG 177 (456)
Q Consensus 108 ~~~~LfV~nLp~~~t--eedL~~~F~~fG~V~~v~i--~~d~~tg~~rGfAF-V~F~s~eaa~aal~~~~-----~~l~G 177 (456)
....|.|+.+...-. -+.|+++|+++-.|++.-| +++.....+. ..+ ++++. +.++++.... ...++
T Consensus 128 ~g~~v~lg~p~~~P~~lv~~L~~lf~~~k~V~rAyL~~~~~~~d~~p~-LLI~le~~~--d~e~ii~~ag~~a~~~l~~d 204 (246)
T PRK11611 128 GGESLLLSEVAEPPAQMIDSLTTLFKTIKPVKRAFLASIKENADAQPN-LLIGIEADG--DIEEIIQAAGSVATDTLPGD 204 (246)
T ss_pred CCCEEEecCCccchHHHHHHHHHHHhhcchHHHHHHHHHhccCCCCCc-eEEEEecCC--CHHHHHHHHhHHHHHhCCCC
Confidence 446677776654432 3779999999998887543 4444433332 222 44433 2244444422 44578
Q ss_pred cEEEEEEccC
Q 035855 178 KQVEVKRALP 187 (456)
Q Consensus 178 r~I~V~~a~~ 187 (456)
..|.|.....
T Consensus 205 ~~IDi~~v~~ 214 (246)
T PRK11611 205 EPIDICQVKE 214 (246)
T ss_pred CceeEEEecC
Confidence 8888877664
No 308
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=33.00 E-value=31 Score=23.39 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=10.5
Q ss_pred ccCcHHHHHHHHhcCC
Q 035855 15 WETSEERLREYFSQYG 30 (456)
Q Consensus 15 ~~vtee~L~e~F~~~G 30 (456)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998753
No 309
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.87 E-value=1.1e+02 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=27.1
Q ss_pred cCcHHHHHHHHhcC-CCeeEEE----EeecCCCCCcceEEEEEeCCHHHHHH
Q 035855 16 ETSEERLREYFSQY-GDVLQTV----VMREKTTGRPRGFGFVVFADPSILDR 62 (456)
Q Consensus 16 ~vtee~L~e~F~~~-G~V~~v~----i~~d~~tg~srGfaFVeF~d~e~A~k 62 (456)
.++.+||+|-+.+. -.-.+++ +...-..+++.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 57888888877643 2222222 2223336788999987 566555543
No 310
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.80 E-value=1.4e+02 Score=24.22 Aligned_cols=54 Identities=6% Similarity=0.059 Sum_probs=38.1
Q ss_pred EEcCCCccCcHHHHHHHHhcC-C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 9 FIGGISWETSEERLREYFSQY-G-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 9 fVgnLP~~vtee~L~e~F~~~-G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
|+=.++.+++..+|++.++++ + .|..|..+..+. ..==|||.+...++|..+..
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHH
Confidence 333456789999999999974 3 466666666542 22359999999888887654
No 311
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=32.51 E-value=3.8e+02 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=16.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeec
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYD 144 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d 144 (456)
.-||+.|- +.--.|.|+|-...+|...+.+.|
T Consensus 81 APIylenk---~qIGKVDEIfG~i~d~~fsIK~~d 112 (215)
T KOG3262|consen 81 APIYLENK---EQIGKVDEIFGPINDVHFSIKPSD 112 (215)
T ss_pred Cceeecch---hhhcchhhhcccccccEEEEecCC
Confidence 44665543 333445566766666554444433
No 312
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=32.47 E-value=1e+02 Score=24.59 Aligned_cols=54 Identities=6% Similarity=0.063 Sum_probs=37.6
Q ss_pred EEEcCCCccCcHHHHHHHHhcC-C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 8 LFIGGISWETSEERLREYFSQY-G-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVL 64 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~-G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl 64 (456)
-|+=.++.+++..+|++.++++ + .|.+|..+..+. ..=-|||.+...++|..+-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 4455567799999999999874 3 466666666542 2225899998887777654
No 313
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=32.42 E-value=1.3e+02 Score=32.28 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGF-VVFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaF-VeF~d~e~A~kAl~ 65 (456)
+.++|-|..||..++.+.|++.+.+. +.|+ +.-++|..+. ..-| |++....+++.+|.
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~---~v~i~I~Lk~~~~~~~vl~ 280 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTD---LPHIEIKLPKGIYAKDLLR 280 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCC---CceEEEEECCCCCHHHHHH
Confidence 35789999999999999999886643 4443 4445554332 2333 45565556666665
No 314
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=31.67 E-value=1.3e+02 Score=33.20 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=39.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCcc-CCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDL-NGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l-~Gr~I~V~~a~~k 188 (456)
-.|.-+||.++ |.|.++.-+ +++..+++|-| +.|++++++.+|+.....+| .+..|.|...-||
T Consensus 379 l~iL~GNLAP~-------------GaViK~sav-~~~~~~~~GpA-~VF~see~a~~ai~~g~i~i~~GdVvVIRyeGPk 443 (577)
T PRK13016 379 LAVLRGNLAPD-------------GAVIKPAAC-DPKFLVHRGPA-LVFDSYPEMKAAIDDENLDVTPDHVMVLRNAGPQ 443 (577)
T ss_pred EEEeecCCCCC-------------ceEEEeccc-CCcccEEEeeE-EEECCHHHHHHHHhCCCcCCCCCeEEEEeCCCCC
Confidence 45566677654 334444332 22223445555 56999999999998776444 5667777766665
Q ss_pred C
Q 035855 189 D 189 (456)
Q Consensus 189 ~ 189 (456)
.
T Consensus 444 G 444 (577)
T PRK13016 444 G 444 (577)
T ss_pred C
Confidence 4
No 315
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=31.65 E-value=2.9e+02 Score=30.18 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k 188 (456)
.-+|.-+||.++ |.|.++.-+.. +-.+++|-| +.|++++++.+|+..... -.+..|.|+..-||
T Consensus 355 gl~iL~GNLaP~-------------GaViK~sa~~~-~~~~~~G~A-~VF~see~a~~ai~~g~i-~~gdVvViRyeGPk 418 (535)
T TIGR00110 355 GLAILKGNLAPN-------------GAVVKIAGVDE-DMTKFEGPA-KVFESEEEALEAILGGKI-KEGDVVVIRYEGPK 418 (535)
T ss_pred CEEEEecCCCcC-------------CeEEEecccCC-cccEEEEeE-EEECCHHHHHHHHhcCCC-CCCeEEEEeCCCCC
Confidence 445666777654 33444333221 123345555 569999999999987543 35667777777666
Q ss_pred C
Q 035855 189 D 189 (456)
Q Consensus 189 ~ 189 (456)
.
T Consensus 419 G 419 (535)
T TIGR00110 419 G 419 (535)
T ss_pred C
Confidence 3
No 316
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=30.97 E-value=1.9e+02 Score=22.31 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=38.8
Q ss_pred EEcCCCccCcHHHHHHHHh-cCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 9 FIGGISWETSEERLREYFS-QYGDV-LQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 9 fVgnLP~~vtee~L~e~F~-~~G~V-~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
+.-.||.+++-++|++... +|... ..+.+.+....+ -+|...+.++-..|++.......+.|++
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~~~~~~~l~l 78 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYDSLGSKKLRL 78 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHHHcCCceEEE
Confidence 3334667888888887776 34322 245555443332 2899999999999998444332333433
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=30.94 E-value=1.1e+02 Score=29.49 Aligned_cols=9 Identities=11% Similarity=-0.101 Sum_probs=4.2
Q ss_pred HHHHHhcCC
Q 035855 22 LREYFSQYG 30 (456)
Q Consensus 22 L~e~F~~~G 30 (456)
+.++++.++
T Consensus 96 ~~~~l~~l~ 104 (246)
T cd03237 96 KTEIAKPLQ 104 (246)
T ss_pred HHHHHHHcC
Confidence 344555443
No 318
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=30.55 E-value=2.3e+02 Score=22.48 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=37.9
Q ss_pred EEEEcCCCccCcHHHHHHHHh-------cCCCeeEEEEeecCCCCC-cceE---EEEEeCCHHHHHHHHH
Q 035855 7 KLFIGGISWETSEERLREYFS-------QYGDVLQTVVMREKTTGR-PRGF---GFVVFADPSILDRVLQ 65 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~-------~~G~V~~v~i~~d~~tg~-srGf---aFVeF~d~e~A~kAl~ 65 (456)
.|.+=.|.++++++++.++++ +...|+.+.+-++..... .++| -+++|++.++-+.-+.
T Consensus 3 Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~ 72 (97)
T PF07876_consen 3 HIVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQT 72 (97)
T ss_dssp EEEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHc
Confidence 344556778888888866553 446677877776654332 2333 4567899888777665
No 319
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.26 E-value=1.2e+02 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 116 GLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 116 nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.|+..+.+|.|.++.+-+|.|.+.. -+| -.+.|-+.+.+++||+...
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 3788899999999999999887666 223 4577889999999998754
No 320
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=30.17 E-value=49 Score=30.79 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=45.9
Q ss_pred cEEEEcCCCccCc-----HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC--CcCCCc-eEEE
Q 035855 6 GKLFIGGISWETS-----EERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK--HSLDGR-TVEA 77 (456)
Q Consensus 6 r~LfVgnLP~~vt-----ee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~--~~l~Gr-~I~v 77 (456)
.+|++-+|+.++- ....+.+|.+|.+.....+++. .++.-|.|.+++.|..|.... ..|.++ .+.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 4577788877652 3344566666666655555543 357789999999999887743 457776 6665
Q ss_pred Eecc
Q 035855 78 KRAM 81 (456)
Q Consensus 78 ~~a~ 81 (456)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 5553
No 321
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=30.05 E-value=2.2e+02 Score=27.84 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=21.2
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCC
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGD 31 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~ 31 (456)
||..+|++|++ |+..++++-|.-|+++++-
T Consensus 154 ~Dh~nr~aY~~-lS~Rad~~lLe~fc~~~gy 183 (318)
T COG4874 154 MDHPNRTAYAG-LSQRADRELLEVFCEQIGY 183 (318)
T ss_pred ecccchhhhhh-hhcccCHHHHHHHHHHcCC
Confidence 56677888876 6777887766666666653
No 322
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.77 E-value=3.1e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=-0.030 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 19 EERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 19 ee~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
++.++++++++| +|+++.+..-+ ---...+|+.|.+.|.++.-
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~----yD~v~i~eaPD~~~a~~~~l 65 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGE----YDFVVIVEAPDDETAAAASL 65 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCC----CCEEEEEEcCCHHHHHHHHH
Confidence 556778888775 56666665433 34678899999998888765
No 323
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=29.58 E-value=3e+02 Score=29.87 Aligned_cols=28 Identities=11% Similarity=0.078 Sum_probs=24.0
Q ss_pred ccCcHHHHHHHHhcCCCeeEEEEeecCC
Q 035855 15 WETSEERLREYFSQYGDVLQTVVMREKT 42 (456)
Q Consensus 15 ~~vtee~L~e~F~~~G~V~~v~i~~d~~ 42 (456)
.++-.+||++||.+...|+++.|+--++
T Consensus 492 ENVyP~ElE~fL~~hp~V~~a~VVGV~D 519 (596)
T KOG1177|consen 492 ENVYPTELEDFLNKHPLVKEAHVVGVPD 519 (596)
T ss_pred cccChHHHHHHHhhCCCeeeEEEEccCC
Confidence 3678899999999999999999987654
No 324
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.57 E-value=54 Score=33.72 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=21.7
Q ss_pred cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---cCCcCCCceEEEEe
Q 035855 28 QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ---DKHSLDGRTVEAKR 79 (456)
Q Consensus 28 ~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~---~~~~l~Gr~I~v~~ 79 (456)
+...|.+|++|-. +.+ + .+.+...++++ +...|.-+.|.+..
T Consensus 138 ~~~~i~nIVfmGm---GEP----l---~N~d~vl~ai~~l~~~~~i~~r~itiST 182 (344)
T PRK14464 138 RRRAVKKVVFMGM---GEP----A---HNLDNVLEAIDLLGTEGGIGHKNLVFST 182 (344)
T ss_pred hcCCCCEEEEecc---Ccc----c---CCHHHHHHHHHHhhchhcCCCceEEEec
Confidence 3456777777752 222 2 33344555544 33345667776633
No 325
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=29.07 E-value=5.1e+02 Score=27.02 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=37.0
Q ss_pred ccCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 15 WETSEERLREYFS----QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 15 ~~vtee~L~e~F~----~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
++.+-.+|..+|. .+|.|.++.+...+. .+.+-..++.|.+.++|.+++..
T Consensus 142 ~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~-p~~~~~~~~~f~~~~~~~~~~~~ 196 (413)
T TIGR00387 142 KDVAGYDLTGLFVGSEGTLGIVTEATLKLLPK-PENIVVALAFFDSIEKAMQAVYD 196 (413)
T ss_pred CCCCCCChhhhcccCCccceEEEEEEEEeecC-CCccEEEEEECCCHHHHHHHHHH
Confidence 3444556778875 378888888777653 34456778899999999999864
No 326
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.01 E-value=4.3e+02 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=33.1
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~d 56 (456)
.+..++|++++..+..|.++.++-.+.. .-.+..+||+-..
T Consensus 433 ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~ 474 (534)
T COG0318 433 NIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKP 474 (534)
T ss_pred EECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcC
Confidence 6889999999999999999888876543 4566788888873
No 327
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=28.67 E-value=3.7e+02 Score=27.41 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=26.4
Q ss_pred EEEEcCCCCCCCHHHHH---HHHHhcCceeEEEEeecCCCCCcceEEEE
Q 035855 111 KIFVGGLPPTLTEDGFR---QYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~---~~F~~fG~V~~v~i~~d~~tg~~rGfAFV 156 (456)
..++.+||.++.+.+++ +++++. .+.+|.|..|.++..+.|++.+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~ 235 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIV 235 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEE
Confidence 45778898888776654 445542 2335555555544566665543
No 328
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=28.54 E-value=2.5e+02 Score=31.11 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=33.3
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCC-CcceEEEEEeC
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTG-RPRGFGFVVFA 55 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg-~srGfaFVeF~ 55 (456)
..|-+++ ..+...+|++.+.++..|.++.|+-.+... ...-.+||...
T Consensus 516 d~i~~~G--~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~ 564 (647)
T PTZ00237 516 DQIKISG--NKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLK 564 (647)
T ss_pred CEEEECC--EEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEec
Confidence 3444443 468899999999999999998887554322 23456788765
No 329
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=28.44 E-value=1.1e+02 Score=32.41 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=32.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFV-VFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFV-eF~d~e~A~kAl~ 65 (456)
.+|.|..||+.++.+++++.+.+. +.|. +.-++|. +.+ +.-|| +++...+++..++
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~ 276 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILE 276 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHH
Confidence 699999999999998988888744 4565 5555655 333 55555 4554444555554
No 330
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=28.23 E-value=2.8e+02 Score=32.14 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhc---CCCeeEEEEeecCCCCCcceEEEE-EeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQ---YGDVLQTVVMREKTTGRPRGFGFV-VFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~---~G~V~~v~i~~d~~tg~srGfaFV-eF~d~e~A~kAl~ 65 (456)
+.++|-|..||+.++.+.|.+-..+ -+.|+ +.-++|... ++.-|| ++....+++..+.
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~---~~vrivI~lk~~~~~~~~~~ 301 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTA---ADVEILVHLAPGVSPDKTID 301 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCC---CceEEEEEeCCCCCHHHHHH
Confidence 4678999999999998888877754 34454 444455322 234443 3444444454444
No 331
>PRK07867 acyl-CoA synthetase; Validated
Probab=28.22 E-value=4.2e+02 Score=28.25 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=28.6
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFA 55 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~ 55 (456)
.+..++|++.+.++..|.++.|+-.+.. ...+-.+||...
T Consensus 413 ~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~ 453 (529)
T PRK07867 413 NLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLA 453 (529)
T ss_pred EeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEEC
Confidence 5788899999999999999888754431 223456777664
No 332
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=28.08 E-value=1.5e+02 Score=34.22 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=34.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCC---CeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYG---DVLQTVVMREKTTGRPRGFGFVVFA-DPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G---~V~~v~i~~d~~tg~srGfaFVeF~-d~e~A~kAl~ 65 (456)
.++|.|..||..+..++|.+.+.+.- .+..+.-++|..+. .++-||... ...+++..++
T Consensus 248 ~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~--~~~~~~i~~k~~~~~~~~~~ 310 (800)
T TIGR01063 248 REAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDR--EGIRIVIELKRDAVAEVVLN 310 (800)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCC--CceEEEEEeCCCCCHHHHHH
Confidence 36799999999999888777765432 23333334444322 356666543 3333444433
No 333
>PRK00110 hypothetical protein; Validated
Probab=27.96 E-value=5.8e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.418 Sum_probs=25.0
Q ss_pred CcHHHHHHHHhcCCCee----EEEEeecCCCCCcceEEEEEeCC--HH-HHHHHHH
Q 035855 17 TSEERLREYFSQYGDVL----QTVVMREKTTGRPRGFGFVVFAD--PS-ILDRVLQ 65 (456)
Q Consensus 17 vtee~L~e~F~~~G~V~----~v~i~~d~~tg~srGfaFVeF~d--~e-~A~kAl~ 65 (456)
=|..+|+.+|++++-.. .+..|.++ .+.|+|.. .+ ..+.||+
T Consensus 108 Rt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~~~~~d~~~e~aie 156 (245)
T PRK00110 108 RTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIEPLDEDELMEAALE 156 (245)
T ss_pred HHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeCCCCHHHHHHHHHh
Confidence 36789999999985422 25555554 45666652 33 3344555
No 334
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=27.89 E-value=55 Score=26.79 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCC----CCCcc------eEEEEEeCCHHH
Q 035855 116 GLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQN----TQRPR------GFGFISFDTEDA 163 (456)
Q Consensus 116 nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~----tg~~r------GfAFV~F~s~ea 163 (456)
.++.++|..||++.+++ |+ .|++|..+.-+. .++.. =-|+|++++.+.
T Consensus 26 ~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 26 EVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 46789999999999987 66 466666543321 11111 159999976543
No 335
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.44 E-value=2.7e+02 Score=21.30 Aligned_cols=48 Identities=6% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHH-hcCce-eEEEE-eecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 119 PTLTEDGFRQYFE-AYGHV-TDVVI-MYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 119 ~~~teedL~~~F~-~fG~V-~~v~i-~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
..++-++|++... +|... ..+.| .+|.+. -+|+..+.++++.|++...
T Consensus 19 ~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~------d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 19 RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDG------DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCC------CEEEeCCHHHHHHHHHHHh
Confidence 7888888887764 45543 23443 344332 6899999999999998764
No 336
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.34 E-value=1e+02 Score=28.32 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcC
Q 035855 12 GISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSL 70 (456)
Q Consensus 12 nLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l 70 (456)
+|+..+.+|.|.++.+-+|-|.+. .+. --.+.|-+.+..++||++...|
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s~~ 166 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFSSF 166 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHHHH
Confidence 588899999999999999988776 322 2367899999999999976543
No 337
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.32 E-value=97 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=21.8
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
+|++|+|.+-...++-++||-|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47889888776668999999999988
No 338
>PRK09188 serine/threonine protein kinase; Provisional
Probab=27.08 E-value=2.4e+02 Score=29.19 Aligned_cols=39 Identities=8% Similarity=0.016 Sum_probs=26.6
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFA 55 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~ 55 (456)
.+..+ |++++.++..|.+|.|+-.+. ..-.+-.|||+..
T Consensus 240 nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~ 279 (365)
T PRK09188 240 NEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAE 279 (365)
T ss_pred eeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEEC
Confidence 45666 899999999999888875432 2223456777754
No 339
>KOG4806 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.03 E-value=1.9e+02 Score=29.83 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=16.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAY 133 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~f 133 (456)
.-..+||+.+||. .|++...|.++
T Consensus 356 ~~kyCIy~~~~~~---~e~~v~~~~N~ 379 (454)
T KOG4806|consen 356 ELKYCIYVFNLPQ---RERSVVDFTNY 379 (454)
T ss_pred heeEEEEEecccc---hhhhhhhhhcc
Confidence 4455788888887 56666666655
No 340
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=64 Score=36.46 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=41.4
Q ss_pred EcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcC
Q 035855 10 IGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSL 70 (456)
Q Consensus 10 VgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l 70 (456)
|.+.|+-+|.+++.+.++.|-++.- +..+..++++..+.+..-..+|+++|++..++
T Consensus 629 is~~~klltke~f~ksL~~F~P~aL----R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~ 685 (952)
T KOG0735|consen 629 ISNGPKLLTKELFEKSLKDFVPLAL----RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEW 685 (952)
T ss_pred hccCcccchHHHHHHHHHhcChHHh----hhccccccCCCCceecccHHHHHHHHHHHHhc
Confidence 5677888899999999999876532 22223445567888888889999999865544
No 341
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=26.96 E-value=3.2e+02 Score=30.04 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=29.0
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~d 56 (456)
.+...||++++.++..|.++.++-.+. ....+=.+||+.++
T Consensus 530 rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~ 571 (655)
T PRK03584 530 RIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAE 571 (655)
T ss_pred EECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECC
Confidence 466889999999999999988775433 22334567777654
No 342
>PRK11901 hypothetical protein; Reviewed
Probab=26.92 E-value=1.3e+02 Score=30.65 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHcCC
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFV--VFADPSILDRVLQDKH 68 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFV--eF~d~e~A~kAl~~~~ 68 (456)
++-+|-|-.+ .+++.|++|.+++. +.+++|.+....++. -|..| +|.+.++|++||+.+.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCC
Confidence 3444545443 56888999888875 456666665544444 34444 3899999999998543
No 343
>PRK05560 DNA gyrase subunit A; Validated
Probab=26.87 E-value=1.8e+02 Score=33.53 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=35.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVV-FADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVe-F~d~e~A~kAl~ 65 (456)
.++|.|..||+.+..+.|.+.+... ..+..+.-++|..+ ..++.||. ++...+++..++
T Consensus 251 ~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~--~~~~~~~i~~~~~~~~~~~~~ 313 (805)
T PRK05560 251 REAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESD--RDGMRIVIELKRDAVPEVVLN 313 (805)
T ss_pred CcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCC--CCceEEEEEECCCCCHHHHHH
Confidence 5689999999999988888777532 23333333444433 33566654 343334444444
No 344
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=26.72 E-value=20 Score=26.60 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=21.7
Q ss_pred cceEEEEEeCC-HHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 150 PRGFGFISFDT-EDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 150 ~rGfAFV~F~s-~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
++||+||..++ .+++--.-+.++.-+++-+|.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 47899999987 22222223444466788888888766
No 345
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=26.29 E-value=2.6e+02 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHhcCcee---EEEE-eecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 120 TLTEDGFRQYFEAYGHVT---DVVI-MYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 120 ~~teedL~~~F~~fG~V~---~v~i-~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
+++-++|++...+.=.|. .+.| .+|.+ + -+|.+.+.++++.|++.+...-...+|+|.
T Consensus 24 d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Ded-g-----d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~ 85 (91)
T cd06398 24 DLNMDGLREKVEELFSLSPDADLSLTYTDED-G-----DVVTLVDDNDLTDAIQYFCSGSRLNPLRID 85 (91)
T ss_pred CCCHHHHHHHHHHHhCCCCCCcEEEEEECCC-C-----CEEEEccHHHHHHHHHHHhccCCCceEEEE
Confidence 566666665554422332 3444 44543 2 589999999999999886433344444443
No 346
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=26.02 E-value=1.8e+02 Score=33.20 Aligned_cols=58 Identities=14% Similarity=0.334 Sum_probs=35.4
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEE-eCCHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVV-FADPSILDRVL 64 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVe-F~d~e~A~kAl 64 (456)
..+|-|..||+.++.++|.+.+.+. ..+..+.-++|..+. .++-||. ++...+++..+
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~--~~vrivi~lk~~~~~~~~~ 309 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDR--NGIRIIIELKKDANAEKIL 309 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCC--CceEEEEEECCCCCHHHHH
Confidence 3579999999999999999877643 223334444554332 3566654 44444444444
No 347
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=26.02 E-value=3.7e+02 Score=22.09 Aligned_cols=64 Identities=13% Similarity=0.092 Sum_probs=46.5
Q ss_pred cCCCccCcHHHHHHHHh----------cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEE
Q 035855 11 GGISWETSEERLREYFS----------QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAK 78 (456)
Q Consensus 11 gnLP~~vtee~L~e~F~----------~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~ 78 (456)
-+||.+++.+++.++-. +-|.+..+..+ .++.+.++.++-+|.++....|.....+.-..|+|.
T Consensus 9 v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~Vt 82 (91)
T PF02426_consen 9 VNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVT 82 (91)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEE
Confidence 36799998887766553 44777766654 456677899999999999999987666655566654
No 348
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.82 E-value=1e+02 Score=30.03 Aligned_cols=45 Identities=24% Similarity=0.553 Sum_probs=32.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHh--cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 5 QGKLFIGGISWETSEERLREYFS--QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~--~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
...++|+|||+.++++-|.+++. .++.+ . ++.+-..|.|++.+..
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~-~----------------~~l~vq~e~a~rl~a~ 143 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV-R----------------MVLMVQKEVAERLLAK 143 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE-E----------------EEEEEEHHHHHHHHTS
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc-c----------------eEEEEehhhhhhccCC
Confidence 46789999999999999999998 33322 2 2223357788888873
No 349
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=25.66 E-value=2.7e+02 Score=22.63 Aligned_cols=42 Identities=10% Similarity=0.115 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 123 EDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 123 eedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal 168 (456)
++.++++++++| +|+++.+..- +-.-...+++.|.+++.++.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~ 64 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAAS 64 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHH
Confidence 466888888886 6777776643 34457888898877666654
No 350
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=25.59 E-value=3.8e+02 Score=27.14 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=24.2
Q ss_pred cCcHHHHHHHHhcC------CCeeEEEEeecCCCCCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQY------GDVLQTVVMREKTTGRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~------G~V~~v~i~~d~~tg~srGfaFVeF~d 56 (456)
..+++++.++|++| |.|+..+|+.-.. ..+||++-.
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~-----~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLEP-----RGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEEC-----CEEEEEECC
Confidence 45677788877654 7888887776432 367777754
No 351
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=25.47 E-value=2.6e+02 Score=20.17 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=38.9
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCH----HHHHHHHH
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADP----SILDRVLQ 65 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~----e~A~kAl~ 65 (456)
||.|.+|.=.--...|++.+.+.-.|.++.+-... ..+-|+|... ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHH
Confidence 57788887777788999999999889888876543 3677888744 44445554
No 352
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.41 E-value=1e+02 Score=25.54 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=21.7
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+|++|+|.+-...++-|++|-|+|++.
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd~ 28 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDNE 28 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECCE
Confidence 478888876655678899999999884
No 353
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=25.31 E-value=4.5e+02 Score=26.85 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCC------CCcceEEEEEeCCHHHHHHHHH
Q 035855 19 EERLREYFSQYGDVLQTVVMREKTT------GRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~~d~~t------g~srGfaFVeF~d~e~A~kAl~ 65 (456)
-++|+++|++|-.|.-+.+-.-+.. ..-|+.+-|.|-.....++||.
T Consensus 12 v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a~~~~GKNtlm~~AL~ 64 (323)
T PTZ00240 12 EERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKAEFVMGKKTLQAKIVE 64 (323)
T ss_pred HHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCcEEEEecHHHHHHHHh
Confidence 4678888888876554444332211 1235555566777777777776
No 354
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=25.13 E-value=7.5e+02 Score=27.17 Aligned_cols=51 Identities=10% Similarity=0.009 Sum_probs=37.4
Q ss_pred ccCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 15 WETSEERLREYFS----QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 15 ~~vtee~L~e~F~----~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
+..+.-+|..+|. .+|.|.++.+...+ ....+-.+++.|.+.++|.+++..
T Consensus 276 k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p-~P~~~~~~~~~f~~~~~a~~av~~ 330 (555)
T PLN02805 276 KSAAGYDLTRLVIGSEGTLGVITEVTLRLQK-IPQHSVVAMCNFPTIKDAADVAIA 330 (555)
T ss_pred cCCCCccHHHHhccCCCceEEEEEEEEEeec-CCcceEEEEEEcCCHHHHHHHHHH
Confidence 3344567888873 57889888887655 334456789999999999988874
No 355
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.12 E-value=1.5e+02 Score=27.98 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=16.3
Q ss_pred ceEEEEEeCCHHHHHHHHHcCC
Q 035855 47 RGFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 47 rGfaFVeF~d~e~A~kAl~~~~ 68 (456)
..+.+|.+.+.+.+..+.+...
T Consensus 96 ~~~~~V~~d~~~~g~~~~~~l~ 117 (272)
T cd06301 96 KGVAYVGSDEVVAGRLQAEYVA 117 (272)
T ss_pred CeeEEEecChHHHHHHHHHHHH
Confidence 4578999998888877766443
No 356
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=24.65 E-value=1.4e+02 Score=24.25 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=30.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA 55 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~ 55 (456)
..-|||++++..+-|.-.+.+.+...+ -++.++....+ ..||.|-..-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~-G~a~m~~~~~n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGD-GSAVMVWSDNN--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCC-ccEEEEEccCC--CCCEEEEEeC
Confidence 355999999988877555555554433 34445544322 7799998873
No 357
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=24.59 E-value=43 Score=33.74 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=27.6
Q ss_pred cCCCCCCCHHHHHHHHHhcCceeE-EEEeecCCCCCcceEEEEEeCCH
Q 035855 115 GGLPPTLTEDGFRQYFEAYGHVTD-VVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 115 ~nLp~~~teedL~~~F~~fG~V~~-v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
.+.|-+++++||+.+..---++.. ..|+.|... +.-...|.+|.-.
T Consensus 241 ~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~-~f~~~~~~ef~Pv 287 (331)
T KOG2014|consen 241 GRDPGETSEEDLERLLQIRNELLESETIIPDELL-EFLSLIFTEFAPV 287 (331)
T ss_pred CCCCccccHHHHHHHHHHHHhhccccccCCchHH-HHHHhcccccCch
Confidence 355667899998888764444433 555555432 3344677777553
No 358
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=24.53 E-value=3.1e+02 Score=22.86 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCccCcHHHHHHHHhcCC--------CeeEEEEeecCC-----CCCcceE-EEEEeCCHHHHHHHHHcCCcCCCc
Q 035855 13 ISWETSEERLREYFSQYG--------DVLQTVVMREKT-----TGRPRGF-GFVVFADPSILDRVLQDKHSLDGR 73 (456)
Q Consensus 13 LP~~vtee~L~e~F~~~G--------~V~~v~i~~d~~-----tg~srGf-aFVeF~d~e~A~kAl~~~~~l~Gr 73 (456)
|.++++++++.++.+.+. .|.++.-+-.+. .+..+|+ .++.|.....+.+.|+....++..
T Consensus 10 l~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~~G~Y~~~~f~~~~~~i~el~~~l~~~~~ 84 (108)
T PRK00453 10 LRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLRKGHYVLLNFEAPPAAIAELERLFRINED 84 (108)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCcEEEEEEEEEEeCHHHHHHHHHHhCCCCC
Confidence 456778888888777653 343433211111 2234454 667787766777777644444443
No 359
>PRK11901 hypothetical protein; Reviewed
Probab=24.45 E-value=1.7e+02 Score=29.88 Aligned_cols=62 Identities=6% Similarity=0.226 Sum_probs=40.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEE--EeCCHHHHHHHHHHcCCccC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI--SFDTEDAVDRVLQKTFHDLN 176 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV--~F~s~eaa~aal~~~~~~l~ 176 (456)
.+|-|.. ..++++|++|.+++. +..++|++....++.- |..| .|.+.++|++|++.+-.+|.
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 3444443 345888998888875 5667777655444432 3333 35889999999999875554
No 360
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=24.42 E-value=3.8e+02 Score=26.57 Aligned_cols=29 Identities=3% Similarity=-0.201 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
+.+|...+.+.+..|++...+...++|-+
T Consensus 153 ~~~V~~Dn~~~~~~a~~~L~~~G~~~I~~ 181 (343)
T PRK10727 153 NRCIALDDRYGAWLATRHLIQQGHTRIGY 181 (343)
T ss_pred CCEEEECcHHHHHHHHHHHHHCCCccEEE
Confidence 45788888888887777554444455544
No 361
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=24.34 E-value=36 Score=29.26 Aligned_cols=11 Identities=18% Similarity=0.609 Sum_probs=7.0
Q ss_pred CCHHHHHHHHH
Q 035855 121 LTEDGFRQYFE 131 (456)
Q Consensus 121 ~teedL~~~F~ 131 (456)
..+|+++++|.
T Consensus 106 ~~~e~~~~~l~ 116 (117)
T COG1393 106 FNEEEIRAFLP 116 (117)
T ss_pred CCHHHHHHHhc
Confidence 46677777663
No 362
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.22 E-value=48 Score=36.32 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhcCceeEEEEeecCCC-----------------CCcceEEEEEeCC
Q 035855 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNT-----------------QRPRGFGFISFDT 160 (456)
Q Consensus 119 ~~~teedL~~~F~~fG~V~~v~i~~d~~t-----------------g~~rGfAFV~F~s 160 (456)
...|++-|+++++.-|--+..+++.+++- ...-|+||+.|+|
T Consensus 231 t~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD 289 (764)
T KOG1148|consen 231 TQHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD 289 (764)
T ss_pred ccchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC
Confidence 44578889999988775555555544321 1235799999966
No 363
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=24.08 E-value=2.5e+02 Score=23.50 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred cCcHHHHHHHHhc-CCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHcCC
Q 035855 16 ETSEERLREYFSQ-YGDVLQTVVMREKT----TGRPRGFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 16 ~vtee~L~e~F~~-~G~V~~v~i~~d~~----tg~srGfaFVeF~d~e~A~kAl~~~~ 68 (456)
+.+..+|++.+.+ +..-.+++|+..-. .+++.|||.| |.+.+.|+ .++.+|
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~k-k~Epk~ 85 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERAR-KIEPKY 85 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHH-hhCchh
Confidence 5677788777764 44333455554433 3466666665 55555444 344334
No 364
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=23.82 E-value=1.2e+03 Score=27.29 Aligned_cols=149 Identities=11% Similarity=0.112 Sum_probs=82.3
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCc-eEEEEecchh----------
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGR-TVEAKRAMSR---------- 83 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr-~I~v~~a~~~---------- 83 (456)
.++.|.|++.|+..+- ++.+..+...-.++.+-.|.=.+-....+.++ ....+.+. .+.+-....+
T Consensus 41 ~~~~~~i~~~ied~gf--~~~~~~~~~~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~ 118 (951)
T KOG0207|consen 41 IVSPESIKETIEDMGF--EASLLSDSEITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVT 118 (951)
T ss_pred ccCHHHHHHHhhcccc--eeeecccCccccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCccc
Confidence 5899999999998864 56777776666666555555444444444444 22233331 1111111111
Q ss_pred -HHH--hhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 84 -EEQ--QFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 84 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
.+. +..+...............+.+...|-|.++.-.-....|+..+.+.--|+++.+....++ +.|.|+.
T Consensus 119 s~~~~~e~ie~~gf~a~~i~~~~~~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~------~~V~~~~ 192 (951)
T KOG0207|consen 119 SPDSIAESIEDLGFSAELIESVNGNSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDT------AIVVYDP 192 (951)
T ss_pred CchhHHHHHHhcCccceehhcccCCCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCc------eEEEecc
Confidence 000 0000000000000001111124566778888777777889999999988999988766553 7788865
Q ss_pred ----HHHHHHHHHHcC
Q 035855 161 ----EDAVDRVLQKTF 172 (456)
Q Consensus 161 ----~eaa~aal~~~~ 172 (456)
+.+..++++...
T Consensus 193 ~~~~pr~i~k~ie~~~ 208 (951)
T KOG0207|consen 193 EITGPRDIIKAIEETG 208 (951)
T ss_pred cccChHHHHHHHHhhc
Confidence 456666666554
No 365
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=23.79 E-value=4e+02 Score=29.39 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=24.2
Q ss_pred EEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 156 ISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 156 V~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
+.|++++++.++++.-..+.+ ..|.|.+.-||.
T Consensus 419 ~VFds~e~~~~ai~~g~l~~g-~VvVIRyeGPkG 451 (575)
T COG0129 419 RVFDSQEDAIKAILDGELKAG-DVVVIRYEGPKG 451 (575)
T ss_pred EEECCHHHHHHHHhcCCCCCC-eEEEEeccCCCC
Confidence 679999999999977655444 666677766664
No 366
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=23.75 E-value=2.6e+02 Score=20.94 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=26.1
Q ss_pred HHHHHHHhcCc-e-e---EEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 125 GFRQYFEAYGH-V-T---DVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 125 dL~~~F~~fG~-V-~---~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
.+..++++||- | . ..+++.. .....-...|+|.|.+++++...
T Consensus 10 ~~~~~l~~~GG~~l~~~~~~~~leG--~~~~~~~viieFPs~~aa~~~~~ 57 (65)
T PF07045_consen 10 AVPPILEKYGGRVLARGGEPEVLEG--DWDPDRVVIIEFPSMEAAKAWYN 57 (65)
T ss_dssp HHHHHHHHTT-EEEEECEEEEEEES--T-SSSEEEEEEESSHHHHHHHHC
T ss_pred HHHHHHHHcCCEEEEECCceeEEec--CCCCCeEEEEECCCHHHHHHHHC
Confidence 45567778872 2 1 1233333 12334589999999999888763
No 367
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=23.60 E-value=2.8e+02 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.3
Q ss_pred EEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 155 FISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 155 FV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
.|.|-+-++++.+|+.+...|....|+.+..
T Consensus 44 ~vvfGd~~~i~~~Le~~~~~I~~y~iE~drR 74 (83)
T PF08503_consen 44 GVVFGDWDEIKPFLEANKDKIEDYRIENDRR 74 (83)
T ss_dssp EEEEEEHHHHHHHHHHTTTTEEEEEEEE-GB
T ss_pred EEEEecHHHHHHHHHhchhhCcEEEEEecCc
Confidence 3788899999999999988888888887643
No 368
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.60 E-value=94 Score=27.85 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=37.7
Q ss_pred CCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCc
Q 035855 12 GISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHS 69 (456)
Q Consensus 12 nLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~ 69 (456)
.|+..+.+|.|.++.+-.|-|.+.. -.| -.+.|-|.+.+.+||++.-.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~~ 165 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIGS 165 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHHH
Confidence 4677889999999999999887766 232 25779999999999986443
No 369
>PF11746 DUF3303: Protein of unknown function (DUF3303); InterPro: IPR021734 Several members are annotated as being LysM domain-like proteins, but these did not match any LysM domains reported in the literature.
Probab=23.51 E-value=4.1e+02 Score=21.65 Aligned_cols=78 Identities=22% Similarity=0.199 Sum_probs=45.7
Q ss_pred EEEcCCCccCcH----HHHHHHHhcC---CCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEe
Q 035855 8 LFIGGISWETSE----ERLREYFSQY---GDVLQTVVMREK-TTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKR 79 (456)
Q Consensus 8 LfVgnLP~~vte----e~L~e~F~~~---G~V~~v~i~~d~-~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~ 79 (456)
|.+-.++....+ +.++++.+.- -....++++..- .....++|+.|+-.|.+...+....-..+.|-.+++.+
T Consensus 3 lv~w~f~~~~~~~~~~~~~~~~~~~G~~~~~peG~~~l~rw~~~~~g~g~~i~eadd~~~l~~~~~~W~~~fg~~~ei~P 82 (91)
T PF11746_consen 3 LVIWQFPPGESQQEAYKAFERFMESGAPGDPPEGFKVLGRWHDPGGGRGFAIVEADDAKALFKHFAPWRDLFGMEFEITP 82 (91)
T ss_pred EEEEEeCCcccchhHHHHHHHHHhcCCCCCCCCCEEEEEEEEecCCCcEEEEEEeCCHHHHHHHHhhhhhccCceEEEEe
Confidence 344455655555 5566665543 122333333321 13456788888888887777666655566667788877
Q ss_pred cchhHH
Q 035855 80 AMSREE 85 (456)
Q Consensus 80 a~~~~~ 85 (456)
....++
T Consensus 83 v~~d~e 88 (91)
T PF11746_consen 83 VMTDEE 88 (91)
T ss_pred cccHHH
Confidence 765443
No 370
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=23.50 E-value=3.1e+02 Score=20.29 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=40.0
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-CCcCCC
Q 035855 18 SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD-KHSLDG 72 (456)
Q Consensus 18 tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~-~~~l~G 72 (456)
..+++.+.++..-+|.+|..+.- ...=...|.+.|.++.+..+.+ ...+.+
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG----~~d~~~~v~~~d~~~l~~~i~~~l~~~~g 62 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTG----EYDLILKVRARDMEELEEFIREKLRSIPG 62 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESS----SSSEEEEEEESSHHHHHHHHHHTHHTSTT
T ss_pred hHHHHHHHHHcCCCEEEEEEEeC----CCCEEEEEEECCHHHHHHHHHHHhhcCCC
Confidence 47889999999999999998754 4445788999999999999775 444443
No 371
>PRK10905 cell division protein DamX; Validated
Probab=23.38 E-value=1.7e+02 Score=29.81 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred EEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEE--eCCHHHHHHHHHcC
Q 035855 9 FIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVV--FADPSILDRVLQDK 67 (456)
Q Consensus 9 fVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVe--F~d~e~A~kAl~~~ 67 (456)
|+--|.--.+++.|++|.++. .+....+......++.. |..|. |.+.++|++||+.+
T Consensus 248 YTLQL~A~Ss~~~l~~fakKl-gL~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakL 306 (328)
T PRK10905 248 YTLQLSSSSNYDNLNGWAKKE-NLKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTL 306 (328)
T ss_pred eEEEEEecCCHHHHHHHHHHc-CCCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHC
No 372
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=23.35 E-value=2.9e+02 Score=22.25 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=24.9
Q ss_pred ccCcHHHHHHHHhcC-CC----eeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 035855 15 WETSEERLREYFSQY-GD----VLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63 (456)
Q Consensus 15 ~~vtee~L~e~F~~~-G~----V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kA 63 (456)
.+.+.++|++.+.+. .. |.-..|...--.+++.+||.| |.+.+.+++.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 456777888777643 22 222223333334566777766 6666655543
No 373
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.32 E-value=2.6e+02 Score=21.43 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 20 ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 20 e~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
++|+++++++| +.-+.+.-. . .-++.|+.+.+++.++++++
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGs-G---~G~~v~~l~~~~~~~~~v~~ 77 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGS-G---GGPTVFALCKDEDDAERVAE 77 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETT-S---SSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCC-C---CCCeEEEEECCHHHHHHHHH
Confidence 45677777888 444444321 0 12578888889999888876
No 374
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=23.24 E-value=2.7e+02 Score=21.48 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=31.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHcCCccCCcEEEE
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT---EDAVDRVLQKTFHDLNGKQVEV 182 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s---~eaa~aal~~~~~~l~Gr~I~V 182 (456)
+|.+..|+. ...+-|.+.+...|+|.....-.+ ---|..++ +++..|++. ..++-.+|++
T Consensus 2 rI~L~~l~~-kd~~lL~eELgnLG~v~~~~~~~~--------~l~~~L~T~~s~DDI~AV~C---FVid~dQI~i 64 (65)
T PF09078_consen 2 RITLSGLKE-KDVDLLLEELGNLGTVSDQEKGGD--------SLEVWLETSVSADDIIAVCC---FVIDPDQISI 64 (65)
T ss_dssp EEEEES--T-THHHHHHHHHHHHS--EEEEEESS--------EEEEEE-STSSHHHHHHHHT---TTS-GGGEEE
T ss_pred eEEecCCCH-HHHHHHHHHHhcCccEEEEecCCC--------eEEEEECCCCChhhEEEEEE---EEEcHHHeEE
Confidence 355555543 345668888999999988776543 23344544 555555543 5566555554
No 375
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=23.18 E-value=8.5e+02 Score=25.78 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=27.2
Q ss_pred ccCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeC
Q 035855 15 WETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFA 55 (456)
Q Consensus 15 ~~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~ 55 (456)
..+..++|++.+..+..|.++.++-.+.. ...+-.+||+.+
T Consensus 440 ~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~ 481 (539)
T PRK07008 440 EWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKR 481 (539)
T ss_pred eEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeC
Confidence 34677899999999988888777643322 223445666544
No 376
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=23.12 E-value=7.1e+02 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=19.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYG 134 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG 134 (456)
+|-.-|-|....+...|+.|.+++++|+
T Consensus 139 IPfhhip~~~~~k~e~E~~~~~ll~~~~ 166 (287)
T COG0788 139 IPFHHIPVTKENKAEAEARLLELLEEYG 166 (287)
T ss_pred CCeeeccCCCCcchHHHHHHHHHHHHhC
Confidence 3445555555555667788999999998
No 377
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=23.06 E-value=1e+02 Score=25.22 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.2
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+|++|+|.+-...++.|-++-|+|+++
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 488999988777789999999999885
No 378
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.99 E-value=1.1e+02 Score=31.80 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=22.9
Q ss_pred CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH---cC--CcCCCceEEEEecc
Q 035855 31 DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ---DK--HSLDGRTVEAKRAM 81 (456)
Q Consensus 31 ~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~---~~--~~l~Gr~I~v~~a~ 81 (456)
.|.+|++|-. +. - +.+.+.+.+||+ +. ..|..|+|.|...-
T Consensus 168 ~i~NIVfMGM---GE----P---L~NydnV~~ai~il~d~~g~~is~R~ITVST~G 213 (371)
T PRK14461 168 RVTNLVFMGM---GE----P---FANYDRWWQAVERLHDPQGFNLGARSMTVSTVG 213 (371)
T ss_pred ceeeEEEEcc---CC----c---hhhHHHHHHHHHHhcCccccCcCCCceEEEeec
Confidence 4666666642 11 1 335555556555 33 35667888886653
No 379
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=22.98 E-value=6.6e+02 Score=26.94 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=26.1
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCC-CcceEEEEEeC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTG-RPRGFGFVVFA 55 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg-~srGfaFVeF~ 55 (456)
.+..++|+.++..+-.|.++.|+-.+... ...-.+||...
T Consensus 462 ~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~ 502 (576)
T PRK05620 462 WIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLA 502 (576)
T ss_pred EEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEec
Confidence 35678899999988888888877654322 12335566543
No 380
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=22.93 E-value=2.8e+02 Score=26.24 Aligned_cols=21 Identities=0% Similarity=-0.148 Sum_probs=15.9
Q ss_pred eEEEEEeCCHHHHHHHHHcCC
Q 035855 48 GFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 48 GfaFVeF~d~e~A~kAl~~~~ 68 (456)
-+.+|.+.+.+.+..+.+...
T Consensus 94 ~~~~V~~D~~~~g~~a~~~l~ 114 (271)
T cd06314 94 RYVYIGTDNYAAGRTAGEIMK 114 (271)
T ss_pred eeEEEccChHHHHHHHHHHHH
Confidence 367899998888888877443
No 381
>PRK09274 peptide synthase; Provisional
Probab=22.74 E-value=4.2e+02 Score=28.17 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=29.6
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d 56 (456)
.+..++|++++.++..|.++.++-.+.....+-.+||+...
T Consensus 452 ~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~~v~~~~ 492 (552)
T PRK09274 452 TLYTIPCERIFNTHPGVKRSALVGVGVPGAQRPVLCVELEP 492 (552)
T ss_pred EECcHHHHHHHHhCcccceeEEEEeCCCCCceEEEEEEccC
Confidence 57788999999999999888877544333334567777654
No 382
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=22.73 E-value=86 Score=32.41 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=9.8
Q ss_pred eEEEEEeCC-HHHHHHHHH
Q 035855 152 GFGFISFDT-EDAVDRVLQ 169 (456)
Q Consensus 152 GfAFV~F~s-~eaa~aal~ 169 (456)
.+..+.|++ ++.++.+|.
T Consensus 288 ~~v~~~~k~~e~~~~~~~~ 306 (365)
T KOG2945|consen 288 TVVLHSSKDREEKSEDSLE 306 (365)
T ss_pred ceeeeccccccchhhhhhh
Confidence 355566654 455555555
No 383
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=22.71 E-value=3.6e+02 Score=29.78 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=29.9
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCC-CCCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKT-TGRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~-tg~srGfaFVeF~d 56 (456)
.+...||++.+.++..|.++.++-.+. ....+-.+||+...
T Consensus 531 ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~ 572 (652)
T TIGR01217 531 RMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAP 572 (652)
T ss_pred EcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECC
Confidence 578889999999999999988775433 22345578887653
No 384
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=22.70 E-value=1.1e+02 Score=28.91 Aligned_cols=52 Identities=13% Similarity=0.056 Sum_probs=25.6
Q ss_pred CCccCcHHHHHHHHhcCCCeeEEEEeecCCCC------CcceEEEEEeCCHHHHHHHHH
Q 035855 13 ISWETSEERLREYFSQYGDVLQTVVMREKTTG------RPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 13 LP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg------~srGfaFVeF~d~e~A~kAl~ 65 (456)
||..++++||+.+-+.... .++.++.++.+- .+.-.|.|.=.=.+++++.|+
T Consensus 68 vp~~~~d~El~~Lk~~~~~-v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~ 125 (199)
T PF01912_consen 68 VPSIITDEELEHLKESLPD-VNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIIS 125 (199)
T ss_dssp EETT--HHHHHHHHHHS-T-SEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHH
T ss_pred ECCcCCHHHHHHHHhhCCC-ceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHH
Confidence 4678999999877766543 355555555432 112255665444444555555
No 385
>PRK09224 threonine dehydratase; Reviewed
Probab=22.64 E-value=5.5e+02 Score=27.76 Aligned_cols=62 Identities=10% Similarity=0.204 Sum_probs=39.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH----HHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE----DAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~----eaa~aal~~~~ 172 (456)
...||--.+|+. .-.|++|++..+.-.+|....-+..++..|-++|-++.. +.+++.|+.++
T Consensus 422 ~e~~~~~~fPer--pGal~~Fl~~l~~~~~It~f~Yr~~~~~~g~vlvgi~~~~~~~~~~~~~l~~~~ 487 (504)
T PRK09224 422 DERLYRFEFPER--PGALLKFLSTLGTHWNISLFHYRNHGADYGRVLAGFQVPDADEPEFEAFLDELG 487 (504)
T ss_pred ceEEEEEeCCCC--CCHHHHHHHhcCCCCeeEEEEEccCCcccccEEEEEecChhhHHHHHHHHHHcC
Confidence 356777677753 456888888888655555444445677778888888642 33445555544
No 386
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=22.45 E-value=74 Score=32.91 Aligned_cols=61 Identities=13% Similarity=0.268 Sum_probs=41.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEee-cCC-CCCcceEEEEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGD-VLQTVVMR-EKT-TGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~-d~~-tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
.++|.|..||+.+++++|.+-+..|-+ |....+.. +.. -..-...++|.|..++++....+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~ 70 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRR 70 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHh
Confidence 478999999999999999999988744 22222221 110 11224678999999998655554
No 387
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.27 E-value=4.9e+02 Score=23.41 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=32.4
Q ss_pred EEcCCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHH-HHHHH
Q 035855 113 FVGGLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTED-AVDRV 167 (456)
Q Consensus 113 fV~nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~e-aa~aa 167 (456)
+|--++..++..+|++.+++ |+ .|..|..+.-+. +.- -|||++...+ +++-|
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHH
Confidence 33336778999999999987 54 456665544332 111 5999996544 34444
No 388
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.26 E-value=94 Score=23.89 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEE
Q 035855 17 TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFV 52 (456)
Q Consensus 17 vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFV 52 (456)
.-|.+|+.+|-+-.+|+++.|+..|...+ |-+||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~--G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRK--GAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeC--CceeE
Confidence 34677888888889999999998765444 44554
No 389
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=22.24 E-value=2.2e+02 Score=25.58 Aligned_cols=55 Identities=7% Similarity=0.099 Sum_probs=34.4
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC-C-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY-G-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRV 63 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~-G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kA 63 (456)
.++-+|+= +...+..+|++.+++. + .|..|..+..+. ..==|||.+....+|..+
T Consensus 82 ~N~yvF~V--d~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 82 NNTLVFIV--DQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDV 138 (145)
T ss_pred CCEEEEEE--cCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHH
Confidence 34555554 4589999999999874 3 355555555432 112589999776665443
No 390
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.18 E-value=35 Score=29.96 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHh-cCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCC
Q 035855 120 TLTEDGFRQYFEA-YGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188 (456)
Q Consensus 120 ~~teedL~~~F~~-fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k 188 (456)
+.+.+.|++.+.+ ......+.+..-. +++..+.|+++++++++++.....+++..|.++.-.+.
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPD 92 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEecccccccccchhhhhhccc
Confidence 4566677766655 2333344443221 24899999999999999998888888888888766543
No 391
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.79 E-value=4.3e+02 Score=23.12 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=48.7
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~ 78 (456)
|....++++|-.-+.-++..+|.+.+.....- +.| + ...|+-+.--.++++.++++...+++...|.++
T Consensus 1 ~~~~vtk~ivlapsa~vsp~elv~~l~~~~~P--vti-K------eTCfGaii~G~Ed~v~klveriR~~d~~~IF~K 69 (142)
T COG4029 1 MPLNVTKYIVLAPSAGVSPKELVQKLLELSPP--VTI-K------ETCFGAIIDGPEDEVRKLVERIRELDGNAIFSK 69 (142)
T ss_pred CCCcceEEEEEcCccCcChHHHHHHHHhcCCC--eEe-e------eeeeeeeecCcHHHHHHHHHHHHHhccCceeec
Confidence 45566788887777778999998888766544 222 1 124777777788888888887777777777654
No 392
>PF05336 DUF718: Domain of unknown function (DUF718); InterPro: IPR008000 Mutarotases are enzymes which interconvert the alpha and beta stereoisomers of monosaccharides, enhancing the rate of their metabolism. Proteins in this entry are homologues of the rhamnose mutarotase YiiL (P32156 from SWISSPROT) from Escherichia coli, and are often encoded in rhamnose utilisation operons. YiiL is an enzyme which interconverts the alpha and beta stereoisomers of the pyranose form of L-rhamnose []. It is not required for growth on rhamnose, but allows cells to utilise this carbon source more efficiently [].The structure of YiiL is distinct from other mutarotases, forming an asymmetric dimmer stabilised by an intermolecular beta-sheet, hydrophobic interactions and a salt bridge [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0019299 rhamnose metabolic process, 0005737 cytoplasm; PDB: 2QLX_A 2QLW_B 1X8D_B.
Probab=21.72 E-value=2e+02 Score=24.08 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQ 169 (456)
Q Consensus 123 eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~ 169 (456)
+.+|.+.+...| |.+..|..+.+++ +=|++++.++.++..+++.
T Consensus 25 WPEv~~~l~~~G-i~~ysIf~~g~~~--~LF~~~E~~~~~~~~~~l~ 68 (106)
T PF05336_consen 25 WPEVLAALREAG-IRNYSIFRDGDTG--RLFMYMETDDFDADMAALA 68 (106)
T ss_dssp -HHHHHHHHHCT-EEEEEEEEETTTT--EEEEEEEECT-CHHHHHGG
T ss_pred CHHHHHHHHHCC-CeEEEEEEeCCCC--EEEEEEEecChhhHHHHcc
Confidence 567777787776 7778888776543 3488899888444444443
No 393
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.61 E-value=4.4e+02 Score=21.36 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=34.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..|+|-.++..++-|+|.+..... -.-....|.+....+.+ |+|.+.++-+.|++
T Consensus 9 gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp-----~tiSS~~EL~EA~r 66 (83)
T cd06404 9 GDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDP-----CTISSQMELEEAFR 66 (83)
T ss_pred CcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCc-----eeecCHHHHHHHHH
Confidence 457888888888877776666532 12112333332223333 88899998888887
No 394
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=21.57 E-value=1.4e+02 Score=31.54 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=51.2
Q ss_pred ccccEEEEcC----CCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 107 IRTKKIFVGG----LPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~n----Lp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
.+.+-|.|.| |-..++.|+|..++. |-.-++|+++.|.- |+--.|+.. ....+++... .+++-.+|.
T Consensus 225 ~kVkGvlitNPsNPLG~~~~~e~L~~ll~-Fa~~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~~~~~~rvH 296 (471)
T KOG0256|consen 225 LKVKGVLITNPSNPLGTTLSPEELISLLN-FASRKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDPHLDPDRVH 296 (471)
T ss_pred CceeEEEEeCCCCCCCCccCHHHHHHHHH-HHhhcceEEEeehh------hcccccCcc-CceEHHHHhhccccCCCcEE
Confidence 3556677777 446678899988874 44457888888754 666667554 2222333332 445778899
Q ss_pred EEEccCCCCCC
Q 035855 182 VKRALPKDANP 192 (456)
Q Consensus 182 V~~a~~k~~~~ 192 (456)
|-|+..|+-.-
T Consensus 297 ivyslSKD~Gl 307 (471)
T KOG0256|consen 297 IVYSLSKDFGL 307 (471)
T ss_pred EEEEeccccCC
Confidence 99999998543
No 395
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.39 E-value=99 Score=27.07 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=7.2
Q ss_pred CCHHHHHHHHH
Q 035855 121 LTEDGFRQYFE 131 (456)
Q Consensus 121 ~teedL~~~F~ 131 (456)
..+++++++|.
T Consensus 105 ~~~e~~~~~l~ 115 (132)
T PRK13344 105 YKEDDIRAFLP 115 (132)
T ss_pred CCHHHHHHHcc
Confidence 46677777764
No 396
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.36 E-value=4e+02 Score=24.95 Aligned_cols=29 Identities=14% Similarity=-0.133 Sum_probs=19.0
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
+.+|...+.+.+..|.+...+...++|-+
T Consensus 91 ~~~V~~d~~~ag~~a~~~L~~~g~~~i~~ 119 (265)
T cd06285 91 SPAVTGDDVLGGRLATRHLLDLGHRRIAV 119 (265)
T ss_pred CCEEEeCcHHHHHHHHHHHHHCCCccEEE
Confidence 56888888888888877444333444443
No 397
>TIGR02517 type_II_gspD general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516).
Probab=21.25 E-value=2.3e+02 Score=31.16 Aligned_cols=26 Identities=4% Similarity=0.060 Sum_probs=16.9
Q ss_pred CcHHHHHHHHhcCCCeeEEEEeecCC
Q 035855 17 TSEERLREYFSQYGDVLQTVVMREKT 42 (456)
Q Consensus 17 vtee~L~e~F~~~G~V~~v~i~~d~~ 42 (456)
..+.+|+++++.+.++..+.++.++.
T Consensus 3 F~~~~l~~vl~~~~~~~g~n~vid~~ 28 (594)
T TIGR02517 3 FVDADISTVVKAISDLTGKNFIIDPR 28 (594)
T ss_pred ccCCcHHHHHHHHHHHhCCeEEECCC
Confidence 34456666666666777777777654
No 398
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=21.18 E-value=3e+02 Score=20.80 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=30.0
Q ss_pred CHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHcC
Q 035855 122 TEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDT---EDAVDRVLQKTF 172 (456)
Q Consensus 122 teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s---~eaa~aal~~~~ 172 (456)
.-.++.+.|++++ .|..|.-...+. ....=.-||+++. ++.++++++.+.
T Consensus 12 ~L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 12 ALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 4567888888886 466665443322 1223367788863 566666666554
No 399
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=21.15 E-value=4.8e+02 Score=25.87 Aligned_cols=39 Identities=13% Similarity=-0.011 Sum_probs=26.1
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCCC-CcceEEEEEe
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTTG-RPRGFGFVVF 54 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~tg-~srGfaFVeF 54 (456)
.+..++|+.++.++..|.++.|+-.+... ...-.+||+.
T Consensus 265 ~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~ 304 (358)
T PRK07824 265 TVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVG 304 (358)
T ss_pred EECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEe
Confidence 57788999999998889888887543221 1234556543
No 400
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=21.12 E-value=1.2e+02 Score=27.30 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=17.0
Q ss_pred CcEEEEcCCCcc-CcHHHHHHHHhc
Q 035855 5 QGKLFIGGISWE-TSEERLREYFSQ 28 (456)
Q Consensus 5 ~r~LfVgnLP~~-vtee~L~e~F~~ 28 (456)
+.+||+-++++. +|.+|+++|-..
T Consensus 18 ~N~Lfang~~lReLt~~Eq~el~~y 42 (159)
T cd00225 18 DNVLFANGFPLRELTPDEQQELAQY 42 (159)
T ss_pred CCEEEecCceeeeCCHHHHHHHHHH
Confidence 467899988864 777776666443
No 401
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.08 E-value=3.2e+02 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.0
Q ss_pred CcceEEEEEeCCHHHHHHHHHcCC
Q 035855 45 RPRGFGFVVFADPSILDRVLQDKH 68 (456)
Q Consensus 45 ~srGfaFVeF~d~e~A~kAl~~~~ 68 (456)
..+-..||.|++++++.++++...
T Consensus 74 ~~~~~v~ll~~~p~d~~~lve~gv 97 (159)
T COG3444 74 YDGQKVFLLFENPQDVLRLVEGGV 97 (159)
T ss_pred CCCeEEEEEECCHHHHHHHHhcCC
Confidence 345689999999999999999444
No 402
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=20.99 E-value=5.4e+02 Score=27.00 Aligned_cols=77 Identities=17% Similarity=0.145 Sum_probs=46.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 112 IFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNT---QRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~t---g~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
|.=.+|.+-++---...+..+|. +|++|+|..-.-- ..++.|++ +|..+.-............+|+.++|+.-..
T Consensus 120 v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy~g~~g~~~~~~l~ya~-tws~e~~l~e~~~p~~~~~~Gk~~~v~~~~~ 198 (389)
T COG1748 120 VLGCGFDPGITNVLAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYAT-TWSPEINLREYTRPARYWENGKWVEVDPLEE 198 (389)
T ss_pred EcccCcCcchHHHHHHHHHHHhhccccEEEEEEecCCCCCCCCcccee-eecHHHhHHHhcCceEEEeCCEEEEecCccc
Confidence 33346777777655555556665 8999988643221 22355554 4666655555554444667899988876655
Q ss_pred CC
Q 035855 188 KD 189 (456)
Q Consensus 188 k~ 189 (456)
++
T Consensus 199 ~~ 200 (389)
T COG1748 199 RE 200 (389)
T ss_pred cc
Confidence 54
No 403
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=20.90 E-value=5.3e+02 Score=25.50 Aligned_cols=29 Identities=7% Similarity=-0.119 Sum_probs=19.1
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
+.+|.+.+.+.+..|++.......+.|-+
T Consensus 153 ~~~V~~D~~~~~~~a~~~L~~~G~~~I~~ 181 (346)
T PRK10401 153 HRCVCLDNVSGARMATRMLLNNGHQRIGY 181 (346)
T ss_pred CCEEEECcHHHHHHHHHHHHHCCCCeEEE
Confidence 55788888887777777554444455543
No 404
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=20.81 E-value=6.4e+02 Score=24.60 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=35.7
Q ss_pred cEEEEcCCCCCC--CHHHHHHHHHhcC-cee---EEEEeecCCCCCcceEEEEEeC----CHHHHHH-HHHH
Q 035855 110 KKIFVGGLPPTL--TEDGFRQYFEAYG-HVT---DVVIMYDQNTQRPRGFGFISFD----TEDAVDR-VLQK 170 (456)
Q Consensus 110 ~~LfV~nLp~~~--teedL~~~F~~fG-~V~---~v~i~~d~~tg~~rGfAFV~F~----s~eaa~a-al~~ 170 (456)
--|.|.-|..+. |-.+||..|.+.| .+- .|.+|.++. +.|+|. ++|++.. +|+.
T Consensus 95 vaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~k-------Gvi~~~~~~~~ed~l~e~~iea 159 (241)
T COG0217 95 VAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDRK-------GVIVVEKNEIDEDELLEAAIEA 159 (241)
T ss_pred eEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEecc-------EEEEECCCCCCHHHHHHHHHHC
Confidence 458888887664 6789999999986 333 477887763 566663 5454444 4443
No 405
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=20.75 E-value=6.5e+02 Score=22.95 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=36.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC--ceeEEEEeecCCCCCcceEEEEEe--CCHHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG--HVTDVVIMYDQNTQRPRGFGFISF--DTEDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~i~~d~~tg~~rGfAFV~F--~s~eaa~aal~~~~ 172 (456)
...+|.|+.+-..--.|.|.++ ..-+ .|.++.+......+.+ .|.++| ..+++.++|+..++
T Consensus 87 ~~~vvLIGhiv~tdiqDTId~I-n~ig~A~vvDl~L~Mp~~e~~S--sA~iti~a~~~e~l~ea~~~l~ 152 (170)
T COG2061 87 KTDVVLIGHIVHTDIQDTIDRI-NSIGGAEVVDLSLSMPGIEGES--SARITIIAVGKEKLDEALRRLK 152 (170)
T ss_pred eEeEEEEEeeecCcHHHHHHHh-hccCCEEEEEEEeecCCCCCCc--ceeEEEEEcChhHHHHHHHHHH
Confidence 4567888877544333333333 3333 6777776433333444 477777 46888888887765
No 406
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.74 E-value=5.1e+02 Score=26.00 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHcCCccCCcEEEE
Q 035855 159 DTEDAVDRVLQKTFHDLNGKQVEV 182 (456)
Q Consensus 159 ~s~eaa~aal~~~~~~l~Gr~I~V 182 (456)
.++.++.+.|+..+.+|.|+.+.|
T Consensus 135 cTp~avi~lL~~~~i~l~Gk~vvV 158 (287)
T PRK14181 135 CTPAGIIELLKYYEIPLHGRHVAI 158 (287)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEE
Confidence 356777777777667777777665
No 407
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=20.70 E-value=2.4e+02 Score=26.04 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 035855 19 EERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD 56 (456)
Q Consensus 19 ee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d 56 (456)
-++|++-|++.-+|.++..+.+. .--.|-.++|+...
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~-~~v~rEl~LiKv~~ 93 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNI-PCVERELMLIKINV 93 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCc-cceeeEEEEEEEec
Confidence 67888888888888888887764 34556677777754
No 408
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=20.64 E-value=5.9e+02 Score=22.39 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=28.6
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEec
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRA 80 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a 80 (456)
+-|-++| .-+++..||.++|..=..++-|.+..+. +.|.+...++++..... |+|.+-+.
T Consensus 30 ~~vs~Gn-~~dv~~~d~l~~~~~D~~t~~I~ly~E~------------~~d~~~f~~~~~~a~~~--KPVv~lk~ 89 (138)
T PF13607_consen 30 YVVSVGN-EADVDFADLLEYLAEDPDTRVIVLYLEG------------IGDGRRFLEAARRAARR--KPVVVLKA 89 (138)
T ss_dssp EEEE-TT--SSS-HHHHHHHHCT-SS--EEEEEES--------------S-HHHHHHHHHHHCCC--S-EEEEE-
T ss_pred EEEEeCc-cccCCHHHHHHHHhcCCCCCEEEEEccC------------CCCHHHHHHHHHHHhcC--CCEEEEeC
Confidence 3466777 4589999999999885544333332221 44555544544433222 66666544
No 409
>PF14082 DUF4263: Domain of unknown function (DUF4263)
Probab=20.49 E-value=1.8e+02 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=10.5
Q ss_pred CcHHHHHHHHhcC
Q 035855 17 TSEERLREYFSQY 29 (456)
Q Consensus 17 vtee~L~e~F~~~ 29 (456)
++|.++.++|++.
T Consensus 6 ~~E~~~Q~f~~~n 18 (164)
T PF14082_consen 6 TSERDWQKFFEKN 18 (164)
T ss_pred CCHHHHHHHHHhC
Confidence 4899999999854
No 410
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=20.46 E-value=8.8e+02 Score=25.68 Aligned_cols=40 Identities=15% Similarity=-0.015 Sum_probs=27.4
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFA 55 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~ 55 (456)
.+...+|++++.++..|.++.++-.... ...+-.+||+..
T Consensus 442 ~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~ 482 (542)
T PRK06018 442 WISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLK 482 (542)
T ss_pred EECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeC
Confidence 5678899999999988988887754332 223456666643
No 411
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=20.37 E-value=89 Score=30.26 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=43.3
Q ss_pred EcCCCccCcHHHHHH-HHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 10 IGGISWETSEERLRE-YFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 10 VgnLP~~vtee~L~e-~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
.+.|..+--+++|+. .|+.+++...+.+.+++.|+.+. -.|..-+++|+..++++.+.+-.+..|..
T Consensus 12 ~g~i~~~~a~~~i~~~~~~~~~~~~k~D~~R~~RtG~pE-vv~a~gKt~eqi~~i~~~~~~~~~~~l~t 79 (254)
T COG1691 12 SGKISLEEAEEQIKSLAFESLGEFAKLDIHREKRTGFPE-VVFAPGKTPEQIVEIVEVLLEKNGIALAT 79 (254)
T ss_pred cCCccHHHHHHHHhhhhhhhhchhhhccchhhccCCCce-EeecCCCCHHHHHHHHHHHHHcCCeeeee
Confidence 455655666777777 67777877777777777665443 34555578888888877544444444433
No 412
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=20.19 E-value=6e+02 Score=23.54 Aligned_cols=29 Identities=10% Similarity=-0.106 Sum_probs=17.9
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
..+|.+.+.+.++.+.+...+...++|-+
T Consensus 93 ~~~v~~d~~~~~~~~~~~l~~~g~~~i~~ 121 (268)
T cd01575 93 DMAVGFSHAEAGRAMARHLLARGYRRIGF 121 (268)
T ss_pred CCeEEeCcHHHHHHHHHHHHHCCCCcEEE
Confidence 34688888888887776443333444444
No 413
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=20.17 E-value=4.4e+02 Score=25.29 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHcCC-cCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFADPSILDRVLQDKH-SLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~d~e~A~kAl~~~~-~l~Gr~I~v~~a~~~ 83 (456)
..|+|.+- +++.++++.++|+ +.. ..+... -...-..|+-.+ +.+.+.++++.. .+...++.|......
T Consensus 10 ~~I~v~~R----~~e~~~~l~~~~g-~~~---~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~agi 80 (245)
T TIGR00112 10 YDIIVINR----SPEKLAALAKELG-IVA---SSDAQEAVKEADVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAAGV 80 (245)
T ss_pred CeEEEEcC----CHHHHHHHHHHcC-cEE---eCChHHHHhhCCEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecCCC
Confidence 45777653 5677777777776 221 111100 011125555555 777777776443 244445666665444
Q ss_pred HHHhhhcccCCCC-CCCC--CCCCCcccccEEEEcCCCCCCC---HHHHHHHHHhcCceeEEE
Q 035855 84 EEQQFSARSGNTN-SGRS--NGGGGTIRTKKIFVGGLPPTLT---EDGFRQYFEAYGHVTDVV 140 (456)
Q Consensus 84 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~LfV~nLp~~~t---eedL~~~F~~fG~V~~v~ 140 (456)
...+.+....... -.+. +.....-...+++.. ..+++ .+.++++|+.+|.+..|.
T Consensus 81 ~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~--~~~~~~~~~~~v~~lf~~~G~~~~v~ 141 (245)
T TIGR00112 81 TLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAA--NANVSEEDRALVLALFKAVGEVVELP 141 (245)
T ss_pred CHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEec--CCCCCHHHHHHHHHHHHhCCCEEEEC
Confidence 4333322211100 0000 000000011223322 23344 456889999999877654
No 414
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=20.02 E-value=5.9e+02 Score=27.81 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=30.0
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCC
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFAD 56 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~d 56 (456)
.+..++|++++.++..|.++.++-.+.. ....-.+||...+
T Consensus 504 rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~ 545 (628)
T TIGR02316 504 RLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKE 545 (628)
T ss_pred EeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcC
Confidence 6788999999999999999888754332 2235577887654
Done!