Query 035855
Match_columns 456
No_of_seqs 414 out of 2233
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 11:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.2E-36 1.1E-40 278.3 20.3 178 3-194 11-189 (196)
2 2cjk_A Nuclear polyadenylated 100.0 6.7E-36 2.3E-40 269.2 15.6 166 4-189 2-167 (167)
3 4f02_A Polyadenylate-binding p 100.0 1.8E-34 6.1E-39 272.5 20.3 166 4-189 14-182 (213)
4 2qfj_A FBP-interacting repress 100.0 9.6E-34 3.3E-38 265.6 18.5 180 4-192 27-209 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 2.9E-33 1E-37 250.7 17.7 163 6-187 1-166 (166)
6 1fxl_A Paraneoplastic encephal 100.0 9.3E-33 3.2E-37 247.7 20.4 162 4-185 1-167 (167)
7 1b7f_A Protein (SXL-lethal pro 100.0 4.1E-33 1.4E-37 250.9 18.1 162 4-185 2-168 (168)
8 3nmr_A Cugbp ELAV-like family 100.0 3.7E-32 1.3E-36 245.9 20.0 164 3-186 1-175 (175)
9 2yh0_A Splicing factor U2AF 65 100.0 2.8E-33 9.5E-38 258.9 11.8 183 3-191 2-197 (198)
10 1fje_B Nucleolin RBD12, protei 100.0 6.7E-32 2.3E-36 245.4 10.3 163 3-189 11-175 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 5.5E-31 1.9E-35 238.1 15.7 157 4-186 3-172 (172)
12 3pgw_A U1-A; protein-RNA compl 100.0 6.9E-30 2.3E-34 250.1 21.3 176 3-186 7-281 (282)
13 3smz_A Protein raver-1, ribonu 100.0 6.9E-30 2.4E-34 250.3 19.9 170 3-190 93-266 (284)
14 3tyt_A Heterogeneous nuclear r 100.0 6E-30 2.1E-34 240.9 16.4 176 3-185 2-204 (205)
15 2ghp_A U4/U6 snRNA-associated 100.0 6.3E-30 2.2E-34 251.6 17.0 171 4-189 116-292 (292)
16 2adc_A Polypyrimidine tract-bi 100.0 2E-29 7E-34 240.4 18.0 176 3-188 32-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.4E-29 4.7E-34 235.0 15.4 175 4-188 2-197 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-28 4.7E-33 242.0 17.9 160 2-191 38-200 (292)
19 3smz_A Protein raver-1, ribonu 100.0 3.8E-28 1.3E-32 237.9 19.7 154 4-190 21-177 (284)
20 3sde_A Paraspeckle component 1 100.0 2.2E-28 7.4E-33 237.9 16.9 155 3-190 20-181 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 8E-23 2.7E-27 183.4 15.8 148 34-191 2-153 (158)
22 3pgw_S U1-70K; protein-RNA com 99.8 1.5E-21 5.2E-26 203.4 9.4 170 21-193 8-187 (437)
23 4f25_A Polyadenylate-binding p 99.8 3.1E-21 1.1E-25 164.6 8.7 108 4-125 4-113 (115)
24 2i2y_A Fusion protein consists 99.8 1.3E-20 4.4E-25 167.9 11.9 137 43-189 9-149 (150)
25 1h2v_Z 20 kDa nuclear CAP bind 99.8 2E-19 6.9E-24 161.2 12.6 86 107-192 37-123 (156)
26 4fxv_A ELAV-like protein 1; RN 99.8 1.9E-19 6.7E-24 149.6 11.1 81 107-187 17-98 (99)
27 2dgs_A DAZ-associated protein 99.8 6.2E-19 2.1E-23 145.7 12.6 88 106-193 7-94 (99)
28 2lxi_A RNA-binding protein 10; 99.8 1.2E-19 4.1E-24 148.4 7.7 83 109-191 1-86 (91)
29 2dnz_A Probable RNA-binding pr 99.8 8.7E-19 3E-23 143.4 12.3 86 107-192 3-89 (95)
30 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-18 5.2E-23 152.2 14.6 89 105-193 38-127 (139)
31 1x5s_A Cold-inducible RNA-bind 99.8 9.4E-19 3.2E-23 145.3 11.8 88 106-193 9-97 (102)
32 2cqd_A RNA-binding region cont 99.8 2.9E-18 1E-22 145.8 15.0 87 105-191 13-99 (116)
33 2cpz_A CUG triplet repeat RNA- 99.8 1.5E-18 5.1E-23 147.4 13.0 88 106-193 22-110 (115)
34 4fxv_A ELAV-like protein 1; RN 99.8 7.1E-19 2.4E-23 146.2 10.7 80 3-82 17-98 (99)
35 1whw_A Hypothetical protein ri 99.8 1.7E-18 5.7E-23 143.0 12.8 86 107-192 6-92 (99)
36 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.5E-23 144.6 12.8 88 106-193 12-100 (105)
37 3s8s_A Histone-lysine N-methyl 99.8 9.1E-19 3.1E-23 148.4 11.2 83 107-189 4-87 (110)
38 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.5E-19 2.6E-23 159.2 11.4 141 52-192 11-156 (165)
39 2lea_A Serine/arginine-rich sp 99.8 3.9E-19 1.3E-23 156.1 8.8 86 106-191 44-130 (135)
40 2dng_A Eukaryotic translation 99.8 2.5E-18 8.5E-23 143.2 12.6 87 106-193 12-98 (103)
41 2cq0_A Eukaryotic translation 99.8 2.2E-18 7.4E-23 143.4 12.2 87 106-192 12-99 (103)
42 1x5t_A Splicing factor 3B subu 99.8 1.7E-18 5.9E-23 141.9 11.3 86 107-192 3-90 (96)
43 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-18 7.1E-23 143.9 11.7 87 106-193 12-99 (104)
44 1x4b_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 147.8 10.8 88 106-193 24-111 (116)
45 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5.1E-23 144.0 10.5 88 106-193 9-97 (102)
46 2cph_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 142.7 12.7 88 106-193 12-102 (107)
47 2dh8_A DAZ-associated protein 99.8 1.5E-18 5E-23 145.0 10.0 88 106-193 13-100 (105)
48 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-18 1.2E-22 142.8 12.2 88 106-193 10-101 (106)
49 3s8s_A Histone-lysine N-methyl 99.8 2.4E-18 8.2E-23 145.8 11.3 86 2-87 3-90 (110)
50 2do4_A Squamous cell carcinoma 99.8 4.4E-18 1.5E-22 140.8 12.6 85 106-191 14-99 (100)
51 2dgo_A Cytotoxic granule-assoc 99.8 5.5E-18 1.9E-22 143.8 13.5 88 106-193 12-100 (115)
52 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.7E-18 9.1E-23 138.1 10.8 83 107-189 4-87 (87)
53 2dnm_A SRP46 splicing factor; 99.8 2.2E-18 7.7E-23 143.3 10.5 87 106-192 10-97 (103)
54 2cqg_A TDP-43, TAR DNA-binding 99.8 6.3E-18 2.2E-22 140.6 13.2 86 107-193 13-98 (103)
55 3ex7_B RNA-binding protein 8A; 99.8 2.2E-18 7.6E-23 148.6 10.2 88 106-193 19-107 (126)
56 3md1_A Nuclear and cytoplasmic 99.8 4.4E-18 1.5E-22 135.6 11.2 81 109-189 1-82 (83)
57 1x4h_A RNA-binding protein 28; 99.8 5.9E-18 2E-22 142.5 12.6 88 106-193 12-106 (111)
58 2cpf_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 140.6 10.9 87 107-193 3-93 (98)
59 2hgn_A Heterogeneous nuclear r 99.8 2.2E-19 7.6E-24 158.6 3.7 124 48-191 2-126 (139)
60 2d9p_A Polyadenylate-binding p 99.8 6.1E-18 2.1E-22 140.7 12.1 86 106-193 12-98 (103)
61 3s7r_A Heterogeneous nuclear r 99.8 3.3E-18 1.1E-22 137.8 10.2 79 107-185 9-87 (87)
62 2fy1_A RNA-binding motif prote 99.7 9.4E-18 3.2E-22 143.3 13.0 85 107-192 5-90 (116)
63 2cpe_A RNA-binding protein EWS 99.7 6.1E-18 2.1E-22 143.1 11.8 87 106-192 12-107 (113)
64 2dnh_A Bruno-like 5, RNA bindi 99.7 1.1E-17 3.9E-22 139.4 13.1 86 107-193 13-102 (105)
65 2cqg_A TDP-43, TAR DNA-binding 99.7 2.5E-18 8.4E-23 143.1 9.0 83 3-85 13-95 (103)
66 2rs2_A Musashi-1, RNA-binding 99.7 3.4E-18 1.1E-22 144.4 9.9 86 107-192 23-108 (109)
67 1wez_A HnRNP H', FTP-3, hetero 99.7 2.1E-18 7.2E-23 144.1 8.4 83 106-190 12-94 (102)
68 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.7E-17 5.9E-22 137.9 13.9 86 106-193 12-98 (103)
69 1p27_B RNA-binding protein 8A; 99.7 7.1E-18 2.4E-22 140.9 11.6 85 106-190 20-105 (106)
70 2cqc_A Arginine/serine-rich sp 99.7 8.5E-18 2.9E-22 137.4 11.8 82 106-187 12-94 (95)
71 2lkz_A RNA-binding protein 5; 99.7 1.7E-18 5.7E-23 143.1 7.6 81 107-187 7-94 (95)
72 3q2s_C Cleavage and polyadenyl 99.7 1.6E-18 5.6E-23 165.5 8.2 81 108-188 67-150 (229)
73 2cq3_A RNA-binding protein 9; 99.7 1.9E-17 6.4E-22 137.7 13.5 86 106-193 12-98 (103)
74 1s79_A Lupus LA protein; RRM, 99.7 5.8E-18 2E-22 141.8 10.4 86 2-88 8-94 (103)
75 2dhg_A TRNA selenocysteine ass 99.7 9E-18 3.1E-22 139.8 11.5 86 107-193 7-95 (104)
76 1x4a_A Splicing factor, argini 99.7 1.5E-17 5E-22 139.9 12.7 85 106-193 19-104 (109)
77 2lxi_A RNA-binding protein 10; 99.7 6.1E-19 2.1E-23 144.2 3.9 80 5-84 1-84 (91)
78 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.9E-18 2.7E-22 134.7 9.9 80 107-186 5-85 (85)
79 2div_A TRNA selenocysteine ass 99.7 1E-17 3.6E-22 138.1 11.0 84 107-190 7-96 (99)
80 3p5t_L Cleavage and polyadenyl 99.7 2.2E-18 7.5E-23 140.2 6.8 83 110-192 2-87 (90)
81 1oo0_B CG8781-PA, drosophila Y 99.7 9.3E-18 3.2E-22 141.2 10.8 86 106-191 23-109 (110)
82 3s7r_A Heterogeneous nuclear r 99.7 8.7E-18 3E-22 135.3 10.1 79 2-80 8-87 (87)
83 2x1f_A MRNA 3'-END-processing 99.7 9E-18 3.1E-22 138.0 10.4 83 108-190 1-84 (96)
84 2dgs_A DAZ-associated protein 99.7 8.1E-18 2.8E-22 138.9 10.1 83 2-84 7-90 (99)
85 4f25_A Polyadenylate-binding p 99.7 1.1E-17 3.7E-22 142.6 10.7 82 108-191 4-86 (115)
86 1x5s_A Cold-inducible RNA-bind 99.7 6.4E-18 2.2E-22 140.2 9.1 84 1-84 8-93 (102)
87 3ucg_A Polyadenylate-binding p 99.7 9.6E-18 3.3E-22 135.4 9.7 82 108-189 5-86 (89)
88 2e5h_A Zinc finger CCHC-type a 99.7 1.1E-17 3.7E-22 136.6 10.1 81 106-186 13-94 (94)
89 2kxn_B Transformer-2 protein h 99.7 7E-18 2.4E-22 146.9 9.4 85 106-190 43-128 (129)
90 2cpy_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 143.2 9.3 88 2-90 12-101 (114)
91 2cqp_A RNA-binding protein 12; 99.7 9.1E-18 3.1E-22 138.2 9.5 84 106-189 12-96 (98)
92 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.3E-22 134.1 10.0 81 3-83 4-86 (87)
93 3lqv_A PRE-mRNA branch site pr 99.7 1.2E-17 4E-22 141.8 10.3 102 3-135 6-109 (115)
94 2jrs_A RNA-binding protein 39; 99.7 1.9E-17 6.5E-22 139.6 11.4 84 106-189 23-107 (108)
95 1whw_A Hypothetical protein ri 99.7 8.4E-18 2.9E-22 138.7 9.1 84 2-85 5-90 (99)
96 2dnz_A Probable RNA-binding pr 99.7 1.7E-17 5.8E-22 135.7 10.8 82 3-84 3-86 (95)
97 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.1E-17 3.8E-22 133.8 9.4 81 1-81 3-85 (85)
98 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-17 4.9E-22 141.2 10.6 83 3-85 13-97 (115)
99 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-17 7.5E-22 135.9 11.3 82 107-191 7-93 (96)
100 4a8x_A RNA-binding protein wit 99.7 1.2E-17 4.2E-22 134.3 9.4 83 108-190 3-87 (88)
101 2fc8_A NCL protein; structure 99.7 2.2E-17 7.4E-22 137.0 11.1 83 106-191 12-95 (102)
102 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-17 8.8E-22 133.8 11.3 84 107-192 6-90 (92)
103 2la6_A RNA-binding protein FUS 99.7 2.4E-17 8.4E-22 136.1 11.2 81 106-186 10-99 (99)
104 3ns6_A Eukaryotic translation 99.7 9.8E-18 3.4E-22 139.2 8.4 85 3-87 4-97 (100)
105 1wg5_A Heterogeneous nuclear r 99.7 2.5E-17 8.5E-22 137.7 10.9 84 107-191 13-97 (104)
106 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.5E-18 2.2E-22 140.2 7.2 84 1-84 8-93 (102)
107 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4.2E-22 141.7 8.8 82 3-84 23-106 (115)
108 2lkz_A RNA-binding protein 5; 99.7 5E-18 1.7E-22 140.2 6.1 80 3-82 7-94 (95)
109 1s79_A Lupus LA protein; RRM, 99.7 1.4E-17 4.8E-22 139.5 9.0 80 107-187 9-88 (103)
110 1x5u_A Splicing factor 3B subu 99.7 1.9E-17 6.5E-22 138.1 9.7 82 3-84 13-96 (105)
111 3ucg_A Polyadenylate-binding p 99.7 6.3E-18 2.1E-22 136.5 6.5 82 1-82 2-84 (89)
112 2jwn_A Embryonic polyadenylate 99.7 2.4E-17 8.1E-22 141.7 10.6 83 108-190 35-117 (124)
113 2cpy_A RNA-binding protein 12; 99.7 1.2E-17 4.1E-22 142.0 8.4 83 106-189 12-95 (114)
114 2khc_A Testis-specific RNP-typ 99.7 2.3E-17 8E-22 140.5 10.2 81 106-186 37-118 (118)
115 2dgw_A Probable RNA-binding pr 99.7 4.3E-17 1.5E-21 132.4 11.4 82 107-190 8-89 (91)
116 2m2b_A RNA-binding protein 10; 99.7 8.2E-18 2.8E-22 146.5 7.4 85 106-191 20-111 (131)
117 2ywk_A Putative RNA-binding pr 99.7 3.1E-17 1.1E-21 134.1 10.4 80 107-187 14-94 (95)
118 2cq4_A RNA binding motif prote 99.7 1.2E-17 4E-22 141.7 8.0 85 106-190 22-106 (114)
119 3p5t_L Cleavage and polyadenyl 99.7 9.8E-18 3.4E-22 136.3 7.2 81 6-86 2-86 (90)
120 3ns6_A Eukaryotic translation 99.7 6.9E-18 2.4E-22 140.2 6.4 82 108-189 5-94 (100)
121 1x4h_A RNA-binding protein 28; 99.7 1.4E-17 4.8E-22 140.1 8.3 82 3-84 13-102 (111)
122 1sjq_A Polypyrimidine tract-bi 99.7 1.9E-17 6.4E-22 139.1 8.9 80 107-192 14-96 (105)
123 2do4_A Squamous cell carcinoma 99.7 3.2E-17 1.1E-21 135.5 10.3 80 3-83 15-96 (100)
124 2hvz_A Splicing factor, argini 99.7 9.6E-18 3.3E-22 139.0 7.1 99 6-119 1-101 (101)
125 2mss_A Protein (musashi1); RNA 99.7 9.4E-18 3.2E-22 131.3 6.6 75 111-185 1-75 (75)
126 2do0_A HnRNP M, heterogeneous 99.7 6.3E-17 2.2E-21 136.9 12.3 83 107-190 13-96 (114)
127 2dh8_A DAZ-associated protein 99.7 6.6E-18 2.3E-22 141.0 6.1 83 2-84 13-96 (105)
128 2cq0_A Eukaryotic translation 99.7 1.8E-17 6.2E-22 137.8 8.6 82 3-84 13-96 (103)
129 3n9u_C Cleavage and polyadenyl 99.7 3.7E-17 1.3E-21 147.1 11.0 85 4-88 54-142 (156)
130 2dnn_A RNA-binding protein 12; 99.7 2E-17 6.8E-22 140.0 8.7 83 4-88 15-98 (109)
131 2e5h_A Zinc finger CCHC-type a 99.7 2.6E-17 9E-22 134.3 9.2 80 2-81 13-94 (94)
132 2cpi_A CCR4-NOT transcription 99.7 2.5E-17 8.6E-22 139.3 9.3 86 106-191 12-104 (111)
133 1p1t_A Cleavage stimulation fa 99.7 2.3E-17 7.8E-22 137.2 8.9 84 107-190 6-90 (104)
134 3md1_A Nuclear and cytoplasmic 99.7 3.6E-17 1.2E-21 130.3 9.6 79 5-83 1-81 (83)
135 2db1_A Heterogeneous nuclear r 99.7 2.9E-17 9.9E-22 140.7 9.7 88 3-91 15-106 (118)
136 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 136.4 7.2 81 107-187 13-94 (95)
137 1p1t_A Cleavage stimulation fa 99.7 1.4E-17 4.9E-22 138.4 7.6 88 2-89 5-94 (104)
138 2cqd_A RNA-binding region cont 99.7 3.3E-17 1.1E-21 139.3 9.9 82 2-83 14-96 (116)
139 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.4E-22 140.8 7.3 83 2-84 22-105 (109)
140 3ulh_A THO complex subunit 4; 99.7 5.7E-17 2E-21 135.6 11.2 80 106-186 26-106 (107)
141 1p27_B RNA-binding protein 8A; 99.7 4.4E-17 1.5E-21 136.1 10.3 81 3-83 21-103 (106)
142 1x5t_A Splicing factor 3B subu 99.7 1.9E-17 6.4E-22 135.7 7.9 82 3-84 3-87 (96)
143 3n9u_C Cleavage and polyadenyl 99.7 3.6E-17 1.2E-21 147.1 10.4 81 108-188 54-137 (156)
144 2cqc_A Arginine/serine-rich sp 99.7 3.5E-17 1.2E-21 133.7 9.4 79 3-81 13-93 (95)
145 2dnq_A RNA-binding protein 4B; 99.7 8.6E-17 2.9E-21 130.5 11.6 79 107-193 6-85 (90)
146 2dis_A Unnamed protein product 99.7 4.9E-17 1.7E-21 136.5 10.4 85 107-191 6-95 (109)
147 2dha_A FLJ20171 protein; RRM d 99.7 2.5E-17 8.5E-22 142.5 8.8 88 3-91 21-113 (123)
148 2cpx_A Hypothetical protein FL 99.7 3.2E-17 1.1E-21 139.0 9.3 88 106-193 22-110 (115)
149 1wez_A HnRNP H', FTP-3, hetero 99.7 1.7E-17 5.9E-22 138.5 7.4 78 3-82 13-91 (102)
150 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-17 4.4E-22 130.9 6.2 77 110-186 1-77 (77)
151 2dgp_A Bruno-like 4, RNA bindi 99.7 2.9E-17 9.8E-22 137.2 8.7 83 2-84 10-97 (106)
152 1x4c_A Splicing factor, argini 99.7 1.5E-16 5.1E-21 133.7 13.1 78 107-191 13-96 (108)
153 2dnm_A SRP46 splicing factor; 99.7 2E-17 7E-22 137.5 7.7 81 3-83 11-93 (103)
154 2dnn_A RNA-binding protein 12; 99.7 3E-17 1E-21 139.0 8.7 81 107-189 14-94 (109)
155 2cpf_A RNA binding motif prote 99.7 2.7E-17 9.1E-22 135.4 8.2 81 3-83 3-88 (98)
156 2fc9_A NCL protein; structure 99.7 7.5E-17 2.6E-21 133.6 10.7 82 106-191 12-94 (101)
157 2dnh_A Bruno-like 5, RNA bindi 99.7 5E-17 1.7E-21 135.5 9.7 82 3-85 13-99 (105)
158 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-17 4.7E-22 138.2 6.0 83 106-189 16-99 (100)
159 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-17 4.6E-22 130.3 5.6 75 111-185 1-75 (75)
160 2x1f_A MRNA 3'-END-processing 99.7 4.9E-17 1.7E-21 133.5 9.2 83 5-87 2-86 (96)
161 1wg5_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 136.4 8.8 80 3-83 13-94 (104)
162 2dis_A Unnamed protein product 99.7 4.7E-17 1.6E-21 136.6 9.1 84 3-86 6-95 (109)
163 2cph_A RNA binding motif prote 99.7 5.3E-17 1.8E-21 135.7 9.3 83 2-84 12-98 (107)
164 2dgu_A Heterogeneous nuclear r 99.7 2.3E-16 7.7E-21 131.3 13.1 80 106-193 8-88 (103)
165 2mss_A Protein (musashi1); RNA 99.7 3.1E-17 1.1E-21 128.3 7.4 74 7-80 1-75 (75)
166 1fj7_A Nucleolin RBD1, protein 99.7 2E-17 6.7E-22 137.1 6.5 84 107-191 15-98 (101)
167 2ywk_A Putative RNA-binding pr 99.7 5.7E-17 1.9E-21 132.5 9.2 79 2-81 13-93 (95)
168 2div_A TRNA selenocysteine ass 99.7 5.9E-17 2E-21 133.6 9.3 80 3-82 7-93 (99)
169 2dng_A Eukaryotic translation 99.7 4.9E-17 1.7E-21 135.3 8.8 80 3-83 13-93 (103)
170 2jrs_A RNA-binding protein 39; 99.7 5.9E-17 2E-21 136.6 9.3 81 3-83 24-106 (108)
171 2cq4_A RNA binding motif prote 99.7 1.8E-17 6.3E-22 140.4 6.3 84 4-87 24-108 (114)
172 2hgl_A HNRPF protein, heteroge 99.7 5.4E-17 1.9E-21 142.7 9.4 85 3-88 42-130 (136)
173 1wel_A RNA-binding protein 12; 99.7 2.1E-17 7.1E-22 142.5 6.6 85 3-87 23-108 (124)
174 2kt5_A RNA and export factor-b 99.7 2.3E-16 7.9E-21 135.7 13.2 86 106-192 32-118 (124)
175 2ad9_A Polypyrimidine tract-bi 99.7 7.4E-17 2.5E-21 138.5 9.9 80 107-192 29-111 (119)
176 2d9p_A Polyadenylate-binding p 99.7 4.3E-17 1.5E-21 135.5 8.2 80 3-84 13-94 (103)
177 2cq1_A PTB-like protein L; RRM 99.7 1.8E-16 6.1E-21 132.3 11.9 80 107-192 13-95 (101)
178 1wex_A Hypothetical protein (r 99.7 1.2E-16 4E-21 134.1 10.8 80 107-192 13-95 (104)
179 2dgt_A RNA-binding protein 30; 99.7 2.1E-16 7.3E-21 128.7 11.9 80 106-193 7-87 (92)
180 2db1_A Heterogeneous nuclear r 99.7 3.8E-17 1.3E-21 139.9 7.8 82 107-189 15-99 (118)
181 2la6_A RNA-binding protein FUS 99.7 1.4E-16 4.8E-21 131.6 10.9 79 3-81 11-99 (99)
182 2fy1_A RNA-binding motif prote 99.7 1.3E-16 4.3E-21 136.3 10.9 81 3-84 5-87 (116)
183 1x4b_A Heterogeneous nuclear r 99.7 4.2E-17 1.5E-21 138.6 7.9 80 5-84 27-107 (116)
184 2lcw_A RNA-binding protein FUS 99.5 2.3E-18 7.9E-23 146.6 0.0 86 107-192 5-99 (116)
185 2ek1_A RNA-binding protein 12; 99.7 2.8E-17 9.7E-22 134.4 6.4 79 3-81 13-93 (95)
186 1wi8_A EIF-4B, eukaryotic tran 99.7 5.1E-17 1.7E-21 135.4 8.0 81 3-84 13-95 (104)
187 2khc_A Testis-specific RNP-typ 99.7 4E-17 1.4E-21 139.1 7.5 79 3-81 38-118 (118)
188 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.3E-17 1.1E-21 128.5 6.5 75 6-80 1-76 (77)
189 1u6f_A Tcubp1, RNA-binding pro 99.7 8.9E-17 3E-21 140.9 9.9 82 3-84 40-123 (139)
190 2cpe_A RNA-binding protein EWS 99.7 5.5E-17 1.9E-21 137.1 8.1 82 3-84 13-104 (113)
191 2ki2_A SS-DNA binding protein 99.7 2.5E-17 8.6E-22 133.4 5.5 81 110-191 2-83 (90)
192 2cqp_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 134.5 6.7 80 3-82 13-94 (98)
193 2kxn_B Transformer-2 protein h 99.7 6.4E-17 2.2E-21 140.9 8.4 81 3-83 44-126 (129)
194 2do0_A HnRNP M, heterogeneous 99.7 1.4E-16 4.6E-21 134.8 10.2 80 3-83 13-94 (114)
195 1why_A Hypothetical protein ri 99.7 2.5E-16 8.5E-21 129.5 11.5 79 106-190 14-95 (97)
196 2dhg_A TRNA selenocysteine ass 99.7 5.5E-17 1.9E-21 135.0 7.6 81 3-84 7-91 (104)
197 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.7E-21 143.3 10.1 81 3-83 37-119 (156)
198 1wel_A RNA-binding protein 12; 99.7 2.4E-17 8.1E-22 142.2 5.5 84 106-189 22-105 (124)
199 2dgw_A Probable RNA-binding pr 99.7 1.1E-16 3.6E-21 130.1 8.9 79 3-83 8-87 (91)
200 1x4e_A RNA binding motif, sing 99.7 1.8E-17 6.3E-22 132.8 4.3 80 107-186 3-83 (85)
201 3ex7_B RNA-binding protein 8A; 99.7 1.1E-16 3.7E-21 138.0 9.4 83 3-85 20-104 (126)
202 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.5E-16 8.5E-21 137.7 11.8 81 105-185 59-140 (140)
203 1sjq_A Polypyrimidine tract-bi 99.7 3.7E-17 1.2E-21 137.3 6.2 77 2-84 13-93 (105)
204 2cq3_A RNA-binding protein 9; 99.7 1.7E-16 5.8E-21 131.9 10.2 81 2-84 12-94 (103)
205 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.4E-16 4.9E-21 132.3 9.7 81 2-84 12-94 (103)
206 1oo0_B CG8781-PA, drosophila Y 99.7 9.7E-17 3.3E-21 135.0 8.7 81 3-83 24-106 (110)
207 3q2s_C Cleavage and polyadenyl 99.7 1.1E-16 3.8E-21 152.8 10.3 85 4-88 67-155 (229)
208 2hgl_A HNRPF protein, heteroge 99.7 3.7E-17 1.3E-21 143.8 6.4 82 107-189 42-126 (136)
209 2lmi_A GRSF-1, G-rich sequence 99.7 5.7E-17 2E-21 136.2 7.2 86 3-89 9-98 (107)
210 1iqt_A AUF1, heterogeneous nuc 99.7 3.5E-17 1.2E-21 127.9 5.5 74 7-80 1-75 (75)
211 2err_A Ataxin-2-binding protei 99.7 1.2E-16 4.1E-21 134.7 9.1 82 106-189 26-108 (109)
212 1x5o_A RNA binding motif, sing 99.7 2.8E-16 9.6E-21 133.0 11.4 82 106-188 22-112 (114)
213 3ulh_A THO complex subunit 4; 99.7 1.9E-16 6.6E-21 132.3 10.2 78 3-81 27-106 (107)
214 2dha_A FLJ20171 protein; RRM d 99.7 3.8E-17 1.3E-21 141.3 5.8 81 108-189 22-106 (123)
215 1x4d_A Matrin 3; structural ge 99.7 1.7E-16 5.9E-21 132.6 9.6 79 107-191 13-95 (102)
216 2hgm_A HNRPF protein, heteroge 99.7 3.3E-17 1.1E-21 142.2 5.2 81 107-189 40-122 (126)
217 1x4e_A RNA binding motif, sing 99.7 4.3E-17 1.5E-21 130.6 5.4 78 3-80 3-82 (85)
218 2xs2_A Deleted in azoospermia- 99.7 8.8E-17 3E-21 133.4 7.5 84 106-191 6-89 (102)
219 1wf1_A RNA-binding protein RAL 99.7 3.8E-16 1.3E-20 131.5 11.5 77 107-191 25-103 (110)
220 2hgm_A HNRPF protein, heteroge 99.7 6E-17 2E-21 140.6 6.6 80 3-84 40-122 (126)
221 2dgv_A HnRNP M, heterogeneous 99.7 2.1E-16 7.3E-21 128.3 9.5 80 2-83 5-86 (92)
222 2cpj_A Non-POU domain-containi 99.7 3E-16 1E-20 129.5 10.5 81 107-193 13-94 (99)
223 1x4g_A Nucleolysin TIAR; struc 99.7 4.1E-16 1.4E-20 131.1 11.4 81 107-193 23-104 (109)
224 2cpd_A Apobec-1 stimulating pr 99.7 7.6E-16 2.6E-20 127.1 12.7 79 106-192 12-93 (99)
225 2dnp_A RNA-binding protein 14; 99.7 4.7E-16 1.6E-20 126.1 11.2 78 107-192 7-85 (90)
226 2m2b_A RNA-binding protein 10; 99.7 4.4E-17 1.5E-21 141.9 5.3 81 3-84 21-109 (131)
227 4a8x_A RNA-binding protein wit 99.7 9.5E-17 3.2E-21 129.1 6.8 81 3-83 2-85 (88)
228 2e5j_A Methenyltetrahydrofolat 99.7 5.5E-16 1.9E-20 127.5 11.4 80 106-190 16-96 (97)
229 2hvz_A Splicing factor, argini 99.7 3.5E-16 1.2E-20 129.5 10.2 77 110-191 1-78 (101)
230 2dnl_A Cytoplasmic polyadenyla 99.7 1.2E-16 4E-21 135.8 7.3 80 3-83 6-88 (114)
231 2jvr_A Nucleolar protein 3; RN 99.7 2.3E-16 7.9E-21 133.9 8.9 79 108-190 27-107 (111)
232 3r27_A HnRNP L, heterogeneous 99.7 4.9E-16 1.7E-20 129.2 10.7 77 107-189 19-98 (100)
233 2xs2_A Deleted in azoospermia- 99.7 5.2E-17 1.8E-21 134.8 4.7 82 3-85 7-88 (102)
234 2lmi_A GRSF-1, G-rich sequence 99.6 4.9E-17 1.7E-21 136.6 4.3 82 107-189 9-93 (107)
235 2ki2_A SS-DNA binding protein 99.6 7.5E-17 2.6E-21 130.6 5.0 80 6-86 2-83 (90)
236 1x5o_A RNA binding motif, sing 99.6 5.1E-16 1.7E-20 131.4 10.3 80 2-82 22-111 (114)
237 2j76_E EIF-4B, EIF4B, eukaryot 99.6 8E-17 2.7E-21 133.5 5.2 80 3-83 17-98 (100)
238 2dgx_A KIAA0430 protein; RRM d 99.6 2.6E-16 9E-21 129.4 8.2 78 3-83 7-90 (96)
239 1x4a_A Splicing factor, argini 99.6 3.8E-16 1.3E-20 131.2 9.2 78 3-83 20-99 (109)
240 3d2w_A TAR DNA-binding protein 99.6 2.2E-16 7.5E-21 128.4 7.5 78 3-85 9-86 (89)
241 2jwn_A Embryonic polyadenylate 99.6 3.4E-16 1.2E-20 134.5 8.8 79 4-82 35-114 (124)
242 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-16 4.1E-21 129.1 5.5 81 107-193 3-83 (88)
243 2kt5_A RNA and export factor-b 99.6 5.6E-16 1.9E-20 133.3 10.0 80 3-83 33-114 (124)
244 3d2w_A TAR DNA-binding protein 99.6 2.4E-16 8.3E-21 128.2 7.2 79 107-191 9-87 (89)
245 2cqh_A IGF-II mRNA-binding pro 99.6 5.8E-16 2E-20 126.2 9.4 80 107-193 6-88 (93)
246 2cq1_A PTB-like protein L; RRM 99.6 3.5E-16 1.2E-20 130.5 8.1 76 3-84 13-92 (101)
247 1fjc_A Nucleolin RBD2, protein 99.6 5.5E-16 1.9E-20 127.0 9.1 80 107-191 14-94 (96)
248 2jvo_A Nucleolar protein 3; nu 99.6 5.1E-16 1.8E-20 130.8 9.1 78 106-191 28-106 (108)
249 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.8E-16 1.7E-20 135.8 9.1 78 3-80 61-140 (140)
250 2ad9_A Polypyrimidine tract-bi 99.6 4.8E-16 1.7E-20 133.4 8.9 76 3-84 29-108 (119)
251 4f02_A Polyadenylate-binding p 99.6 8.5E-16 2.9E-20 144.4 11.3 84 106-189 12-96 (213)
252 2e5g_A U6 snRNA-specific termi 99.6 9.2E-16 3.2E-20 125.5 10.0 81 108-193 7-87 (94)
253 2nlw_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 129.4 9.1 82 107-190 13-102 (105)
254 2lea_A Serine/arginine-rich sp 99.6 1.4E-16 4.9E-21 139.6 5.4 81 3-83 45-127 (135)
255 1x4f_A Matrin 3; structural ge 99.6 7.1E-16 2.4E-20 131.0 9.4 80 106-191 22-105 (112)
256 2cpi_A CCR4-NOT transcription 99.6 2.6E-16 8.9E-21 133.0 6.7 82 3-84 13-102 (111)
257 1wex_A Hypothetical protein (r 99.6 8.2E-16 2.8E-20 129.0 9.7 76 3-84 13-92 (104)
258 2wbr_A GW182, gawky, LD47780P; 99.6 6.4E-16 2.2E-20 124.9 8.5 73 108-186 6-79 (89)
259 2hgn_A Heterogeneous nuclear r 99.6 9.7E-17 3.3E-21 141.6 4.0 79 3-83 44-123 (139)
260 3beg_B Splicing factor, argini 99.6 5.7E-16 2E-20 131.9 8.6 76 108-190 15-96 (115)
261 2ytc_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.5E-20 121.8 10.2 75 106-186 9-85 (85)
262 2kn4_A Immunoglobulin G-bindin 99.6 4.2E-16 1.4E-20 139.4 7.9 80 4-83 69-150 (158)
263 2a3j_A U1 small nuclear ribonu 99.6 1.4E-15 4.7E-20 132.2 10.9 81 107-190 27-112 (127)
264 2wbr_A GW182, gawky, LD47780P; 99.6 7.8E-16 2.7E-20 124.4 8.6 75 4-84 6-82 (89)
265 1l3k_A Heterogeneous nuclear r 99.6 1.4E-15 4.9E-20 139.5 11.6 85 106-190 10-94 (196)
266 2kvi_A Nuclear polyadenylated 99.6 6.1E-16 2.1E-20 127.1 8.1 78 107-192 8-87 (96)
267 2la4_A Nuclear and cytoplasmic 99.6 6.4E-16 2.2E-20 127.9 8.2 75 108-188 26-101 (101)
268 2err_A Ataxin-2-binding protei 99.6 5.1E-16 1.7E-20 130.9 7.6 80 2-83 26-107 (109)
269 2fc8_A NCL protein; structure 99.6 5.2E-16 1.8E-20 128.6 7.5 79 3-84 13-93 (102)
270 2dnq_A RNA-binding protein 4B; 99.6 1.2E-15 3.9E-20 123.8 9.4 75 2-84 5-81 (90)
271 1x4d_A Matrin 3; structural ge 99.6 4.6E-16 1.6E-20 130.0 7.0 75 3-83 13-92 (102)
272 2fc9_A NCL protein; structure 99.6 5.8E-16 2E-20 128.2 7.5 78 2-83 12-91 (101)
273 2e44_A Insulin-like growth fac 99.6 1.6E-15 5.4E-20 124.3 10.0 80 107-190 13-94 (96)
274 2f3j_A RNA and export factor b 99.6 1.3E-15 4.4E-20 139.8 10.4 83 106-189 85-168 (177)
275 1x4c_A Splicing factor, argini 99.6 9.4E-16 3.2E-20 128.9 8.6 74 3-83 13-93 (108)
276 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.1E-15 3.9E-20 138.2 9.6 84 3-86 70-155 (165)
277 1x5p_A Negative elongation fac 99.6 4.3E-15 1.5E-19 122.2 12.2 79 107-193 13-92 (97)
278 1fj7_A Nucleolin RBD1, protein 99.6 8.9E-17 3.1E-21 133.1 1.9 79 4-83 16-95 (101)
279 2xnq_A Nuclear polyadenylated 99.6 2.6E-15 8.8E-20 123.9 10.6 75 107-189 20-96 (97)
280 2lcw_A RNA-binding protein FUS 99.4 4.8E-17 1.6E-21 138.4 0.0 85 2-86 4-98 (116)
281 1wf0_A TDP-43, TAR DNA-binding 99.6 3.1E-16 1E-20 126.7 4.5 77 3-84 3-79 (88)
282 1why_A Hypothetical protein ri 99.6 1.9E-15 6.5E-20 124.2 9.2 75 3-83 15-93 (97)
283 1x4f_A Matrin 3; structural ge 99.6 8.8E-16 3E-20 130.4 6.8 76 3-84 23-103 (112)
284 3r27_A HnRNP L, heterogeneous 99.6 2.6E-15 9E-20 124.8 9.4 75 3-83 19-97 (100)
285 2dgu_A Heterogeneous nuclear r 99.6 1.7E-15 5.8E-20 126.0 8.3 76 3-86 9-86 (103)
286 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4E-20 129.6 7.5 78 107-186 6-86 (114)
287 1nu4_A U1A RNA binding domain; 99.6 9.8E-16 3.3E-20 125.6 6.7 81 107-190 6-91 (97)
288 2krb_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 121.3 7.0 71 5-77 1-80 (81)
289 3lqv_A PRE-mRNA branch site pr 99.6 2.2E-15 7.6E-20 127.6 9.1 80 107-189 6-86 (115)
290 2krb_A Eukaryotic translation 99.6 9.3E-16 3.2E-20 121.9 6.3 71 110-182 2-80 (81)
291 2la4_A Nuclear and cytoplasmic 99.6 1.1E-15 3.9E-20 126.4 7.1 74 3-82 25-100 (101)
292 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 127.3 7.3 77 4-82 14-99 (105)
293 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5.2E-20 125.3 7.5 75 3-83 13-89 (99)
294 2ytc_A PRE-mRNA-splicing facto 99.6 2.9E-15 9.9E-20 119.7 8.7 74 2-81 9-85 (85)
295 2cpx_A Hypothetical protein FL 99.6 4.4E-16 1.5E-20 131.9 4.1 82 3-84 23-106 (115)
296 1fxl_A Paraneoplastic encephal 99.6 5.6E-15 1.9E-19 131.5 11.4 82 109-190 2-84 (167)
297 1x4g_A Nucleolysin TIAR; struc 99.6 2.3E-15 7.9E-20 126.5 8.4 76 3-84 23-100 (109)
298 1b7f_A Protein (SXL-lethal pro 99.6 3.6E-15 1.2E-19 133.2 10.0 83 108-190 2-85 (168)
299 2f3j_A RNA and export factor b 99.6 2.7E-15 9.3E-20 137.6 9.3 81 4-85 87-169 (177)
300 2e5j_A Methenyltetrahydrofolat 99.6 2.7E-15 9.3E-20 123.4 8.4 75 4-83 18-94 (97)
301 2voo_A Lupus LA protein; RNA-b 99.6 3.4E-15 1.2E-19 138.8 10.1 80 108-188 108-187 (193)
302 2a3j_A U1 small nuclear ribonu 99.6 3.6E-15 1.2E-19 129.5 9.6 82 4-88 28-115 (127)
303 2jvr_A Nucleolar protein 3; RN 99.6 1.8E-15 6.1E-20 128.4 7.3 77 3-83 26-105 (111)
304 1sjr_A Polypyrimidine tract-bi 99.6 7.7E-15 2.6E-19 132.5 11.8 80 108-191 45-127 (164)
305 1whx_A Hypothetical protein ri 99.6 2.9E-15 9.9E-20 126.8 8.2 75 108-188 9-84 (111)
306 2dgt_A RNA-binding protein 30; 99.6 4.4E-15 1.5E-19 120.8 8.6 74 2-83 7-82 (92)
307 2jvo_A Nucleolar protein 3; nu 99.6 4.1E-15 1.4E-19 125.3 8.3 75 2-84 28-104 (108)
308 1whx_A Hypothetical protein ri 99.6 3.1E-15 1E-19 126.6 7.5 75 2-82 7-83 (111)
309 1wg1_A KIAA1579 protein, homol 99.6 3.3E-15 1.1E-19 120.7 7.0 75 108-189 4-79 (88)
310 2e5g_A U6 snRNA-specific termi 99.6 3.3E-15 1.1E-19 122.1 6.9 76 3-83 6-82 (94)
311 1nu4_A U1A RNA binding domain; 99.6 2.2E-15 7.6E-20 123.5 5.9 81 3-86 6-92 (97)
312 2dnp_A RNA-binding protein 14; 99.6 5.5E-15 1.9E-19 119.7 7.9 74 2-83 6-81 (90)
313 2kvi_A Nuclear polyadenylated 99.6 5.1E-15 1.7E-19 121.6 7.4 75 3-85 8-85 (96)
314 1wg1_A KIAA1579 protein, homol 99.6 4.3E-15 1.5E-19 120.0 6.8 73 3-82 3-77 (88)
315 3egn_A RNA-binding protein 40; 99.5 2.7E-15 9.2E-20 132.2 5.7 85 107-191 43-133 (143)
316 2e44_A Insulin-like growth fac 99.5 3.9E-15 1.3E-19 121.9 6.2 76 4-83 14-92 (96)
317 2cpd_A Apobec-1 stimulating pr 99.5 1.3E-14 4.4E-19 119.6 9.2 73 3-83 13-89 (99)
318 2cqh_A IGF-II mRNA-binding pro 99.5 3.7E-15 1.3E-19 121.4 5.8 74 3-83 6-83 (93)
319 2cq2_A Hypothetical protein LO 99.5 1.3E-14 4.3E-19 123.5 9.3 79 107-191 23-109 (114)
320 3beg_B Splicing factor, argini 99.5 6.3E-15 2.1E-19 125.4 7.4 73 3-82 14-93 (115)
321 2j8a_A Histone-lysine N-methyl 99.5 7.4E-15 2.5E-19 126.6 7.8 77 110-186 3-94 (136)
322 1fjc_A Nucleolin RBD2, protein 99.5 3E-15 1E-19 122.6 5.1 76 3-83 14-91 (96)
323 2xnq_A Nuclear polyadenylated 99.5 1.4E-14 4.9E-19 119.4 9.3 74 2-83 19-95 (97)
324 2i2y_A Fusion protein consists 99.5 8.6E-15 2.9E-19 130.0 8.3 76 3-83 71-148 (150)
325 2cjk_A Nuclear polyadenylated 99.5 6.3E-15 2.1E-19 131.7 7.4 79 5-83 87-166 (167)
326 3zzy_A Polypyrimidine tract-bi 99.5 2.7E-14 9.2E-19 124.2 10.7 79 108-191 27-109 (130)
327 1wf1_A RNA-binding protein RAL 99.5 8.3E-15 2.8E-19 123.3 7.2 71 4-82 26-99 (110)
328 2e5i_A Heterogeneous nuclear r 99.5 5.2E-14 1.8E-18 121.6 12.3 77 108-190 24-104 (124)
329 3md3_A Nuclear and cytoplasmic 99.5 2.3E-14 7.8E-19 127.4 10.4 79 3-81 85-165 (166)
330 2hzc_A Splicing factor U2AF 65 99.5 2.3E-14 7.9E-19 114.9 9.3 72 107-184 4-86 (87)
331 2qfj_A FBP-interacting repress 99.5 1.9E-14 6.4E-19 134.0 10.1 81 3-83 123-205 (216)
332 2j8a_A Histone-lysine N-methyl 99.5 1E-14 3.5E-19 125.7 7.2 78 6-83 3-96 (136)
333 3pgw_S U1-70K; protein-RNA com 99.5 2.3E-14 7.9E-19 149.2 10.1 82 4-85 101-184 (437)
334 2pe8_A Splicing factor 45; RRM 99.5 5E-14 1.7E-18 118.3 10.2 81 107-187 6-93 (105)
335 2hzc_A Splicing factor U2AF 65 99.5 1.7E-14 5.9E-19 115.6 7.1 71 3-79 4-86 (87)
336 2voo_A Lupus LA protein; RNA-b 99.5 4E-14 1.4E-18 131.6 10.0 79 5-84 109-188 (193)
337 3egn_A RNA-binding protein 40; 99.5 4.4E-15 1.5E-19 130.8 3.0 82 3-84 43-131 (143)
338 2bz2_A Negative elongation fac 99.5 4.2E-14 1.4E-18 121.6 9.0 77 107-191 37-114 (121)
339 1sjr_A Polypyrimidine tract-bi 99.5 6E-14 2E-18 126.6 10.2 76 5-84 46-125 (164)
340 2g4b_A Splicing factor U2AF 65 99.5 4.2E-14 1.4E-18 126.9 9.2 77 4-80 93-171 (172)
341 2yh0_A Splicing factor U2AF 65 99.5 3E-14 1E-18 130.8 8.1 81 3-83 112-194 (198)
342 3nmr_A Cugbp ELAV-like family 99.5 7E-14 2.4E-18 125.5 10.3 83 108-190 2-90 (175)
343 1x5p_A Negative elongation fac 99.5 6.5E-14 2.2E-18 115.1 9.2 73 3-83 13-87 (97)
344 2diu_A KIAA0430 protein; struc 99.5 7.1E-14 2.4E-18 114.1 8.6 75 107-191 6-87 (96)
345 3tyt_A Heterogeneous nuclear r 99.5 8.2E-14 2.8E-18 130.6 9.9 77 108-189 3-81 (205)
346 2dit_A HIV TAT specific factor 99.5 2.9E-13 1E-17 114.4 11.9 83 106-192 12-106 (112)
347 2cq2_A Hypothetical protein LO 99.5 4.6E-14 1.6E-18 120.0 5.3 73 3-81 23-104 (114)
348 3pgw_A U1-A; protein-RNA compl 99.4 2.7E-13 9.2E-18 132.0 11.2 81 107-190 7-92 (282)
349 3zzy_A Polypyrimidine tract-bi 99.4 2.1E-13 7.2E-18 118.6 9.1 74 6-84 29-107 (130)
350 1fje_B Nucleolin RBD12, protei 99.4 7E-14 2.4E-18 126.1 5.7 84 106-190 10-93 (175)
351 2bz2_A Negative elongation fac 99.4 1.9E-13 6.6E-18 117.4 8.1 74 3-84 37-112 (121)
352 2pe8_A Splicing factor 45; RRM 99.4 4.8E-13 1.6E-17 112.2 10.2 83 2-84 5-95 (105)
353 2e5i_A Heterogeneous nuclear r 99.4 4.9E-13 1.7E-17 115.5 10.1 73 6-84 26-103 (124)
354 2adc_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 127.3 9.8 78 107-189 32-111 (229)
355 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.8E-17 108.4 11.4 69 119-193 27-95 (100)
356 3u1l_A PRE-mRNA-splicing facto 99.4 4.5E-13 1.5E-17 128.3 9.2 79 2-86 131-232 (240)
357 3u1l_A PRE-mRNA-splicing facto 99.4 3.2E-13 1.1E-17 129.3 7.8 78 107-190 132-231 (240)
358 2diu_A KIAA0430 protein; struc 99.4 5E-13 1.7E-17 109.1 7.5 72 3-84 7-85 (96)
359 3v4m_A Splicing factor U2AF 65 99.4 5E-13 1.7E-17 112.1 7.6 81 107-187 3-96 (105)
360 1qm9_A Polypyrimidine tract-bi 99.4 4.7E-13 1.6E-17 123.4 7.2 77 108-189 2-80 (198)
361 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.2E-12 7.7E-17 107.2 10.3 76 3-83 8-90 (100)
362 3ue2_A Poly(U)-binding-splicin 99.3 2.3E-12 7.9E-17 110.3 8.4 80 108-187 19-108 (118)
363 3sde_A Paraspeckle component 1 99.3 5E-12 1.7E-16 122.3 10.8 76 106-187 19-95 (261)
364 1jmt_A Splicing factor U2AF 35 99.3 1.1E-12 3.7E-17 109.8 4.2 71 114-185 20-103 (104)
365 2dit_A HIV TAT specific factor 99.3 4.9E-12 1.7E-16 106.8 7.7 78 3-84 13-103 (112)
366 1jmt_A Splicing factor U2AF 35 99.2 3.9E-12 1.3E-16 106.4 4.9 70 10-80 20-103 (104)
367 3v4m_A Splicing factor U2AF 65 99.2 1.5E-11 5.3E-16 102.9 8.4 83 3-85 3-99 (105)
368 3ue2_A Poly(U)-binding-splicin 99.2 3.6E-11 1.2E-15 102.9 8.7 80 4-83 19-109 (118)
369 3s6e_A RNA-binding protein 39; 99.2 5.9E-11 2E-15 100.9 8.6 76 107-186 5-91 (114)
370 3tht_A Alkylated DNA repair pr 99.1 9.3E-11 3.2E-15 118.0 9.5 74 106-185 15-96 (345)
371 3tht_A Alkylated DNA repair pr 99.1 1.7E-10 5.8E-15 116.1 9.1 73 2-80 15-96 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 3.7E-10 1.3E-14 96.7 8.7 77 104-186 13-94 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 7.5E-10 2.6E-14 89.5 7.7 73 108-188 6-86 (91)
374 3s6e_A RNA-binding protein 39; 99.0 2.8E-09 9.5E-14 90.5 10.5 81 4-88 6-98 (114)
375 1owx_A Lupus LA protein, SS-B, 98.9 2.9E-09 9.8E-14 91.2 8.8 77 4-86 17-99 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.8 3.5E-09 1.2E-13 86.0 5.3 73 107-187 13-94 (95)
377 3dxb_A Thioredoxin N-terminall 98.7 1.2E-07 4.2E-12 89.0 13.4 67 120-186 140-211 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.7 2.5E-08 8.5E-13 80.6 7.2 73 2-82 4-85 (91)
379 2dhx_A Poly (ADP-ribose) polym 98.6 2.4E-07 8E-12 76.2 9.9 88 3-122 6-99 (104)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 5.2E-08 1.8E-12 79.1 5.5 73 1-81 11-93 (95)
381 3dxb_A Thioredoxin N-terminall 98.5 4.2E-07 1.4E-11 85.3 9.0 69 16-84 140-214 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.3 5.7E-06 2E-10 68.0 10.6 75 108-190 7-86 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.2 4.2E-06 1.4E-10 69.4 8.7 70 108-183 20-95 (117)
384 2l9w_A U4/U6 snRNA-associated- 98.1 1.3E-05 4.3E-10 66.6 8.2 74 3-82 19-99 (117)
385 1whv_A Poly(A)-specific ribonu 97.4 0.0004 1.4E-08 56.4 6.9 53 5-66 16-68 (100)
386 1wey_A Calcipressin 1; structu 97.3 0.00033 1.1E-08 57.7 6.1 74 109-188 5-84 (104)
387 1whv_A Poly(A)-specific ribonu 97.1 0.00082 2.8E-08 54.6 5.7 55 108-171 15-69 (100)
388 1wwh_A Nucleoporin 35, nucleop 97.0 0.0021 7.1E-08 54.3 8.3 73 107-186 22-95 (119)
389 1uw4_A UPF3X; nonsense mediate 96.9 0.0022 7.5E-08 51.7 6.7 66 110-175 2-70 (91)
390 1uw4_A UPF3X; nonsense mediate 96.8 0.002 7E-08 51.9 6.3 60 6-65 2-63 (91)
391 3ctr_A Poly(A)-specific ribonu 96.8 0.00094 3.2E-08 54.4 4.2 52 6-66 7-58 (101)
392 1wwh_A Nucleoporin 35, nucleop 96.7 0.0057 1.9E-07 51.6 8.6 75 4-85 23-99 (119)
393 3ctr_A Poly(A)-specific ribonu 96.7 0.0013 4.5E-08 53.5 4.1 55 108-171 5-59 (101)
394 1wey_A Calcipressin 1; structu 96.6 0.0033 1.1E-07 51.8 5.9 71 5-81 5-82 (104)
395 3p3d_A Nucleoporin 53; structu 96.5 0.0025 8.6E-08 54.6 5.1 87 2-89 4-105 (132)
396 3pq1_A Poly(A) RNA polymerase; 96.2 0.0023 8E-08 66.3 3.6 59 108-172 52-110 (464)
397 3pq1_A Poly(A) RNA polymerase; 96.1 0.0021 7.1E-08 66.7 2.7 56 4-65 52-107 (464)
398 2l08_A Regulator of nonsense t 95.8 0.0094 3.2E-07 48.4 4.8 66 107-172 7-74 (97)
399 3p3d_A Nucleoporin 53; structu 95.2 0.019 6.3E-07 49.2 4.7 78 108-186 6-97 (132)
400 2l08_A Regulator of nonsense t 95.2 0.015 5E-07 47.3 3.8 61 5-65 9-71 (97)
401 3d45_A Poly(A)-specific ribonu 87.4 1.2 4.1E-05 46.6 7.9 53 5-66 440-492 (507)
402 3d45_A Poly(A)-specific ribonu 86.3 1.6 5.4E-05 45.7 8.1 57 107-172 438-494 (507)
403 4eyt_A Telomerase associated p 82.0 9.4 0.00032 30.2 8.8 56 108-171 11-66 (129)
404 4eyt_A Telomerase associated p 79.3 13 0.00043 29.5 8.7 67 4-78 11-77 (129)
405 2g0c_A ATP-dependent RNA helic 72.3 7.5 0.00026 29.1 5.8 59 119-186 11-75 (76)
406 3fry_A Probable copper-exporti 71.7 14 0.00048 26.7 7.1 60 107-173 4-63 (73)
407 2cu1_A Mitogen-activated prote 65.2 8.5 0.00029 31.0 4.7 64 117-188 24-88 (103)
408 2ew9_A Copper-transporting ATP 64.4 34 0.0012 27.9 8.9 135 1-173 1-143 (149)
409 4e8u_A Putative uncharacterize 57.6 17 0.00059 32.2 5.9 60 110-172 13-84 (172)
410 3dxs_X Copper-transporting ATP 55.7 34 0.0012 24.4 6.6 60 109-174 3-66 (74)
411 3zzp_A TS9, ribosomal protein 54.2 14 0.00049 28.2 4.2 61 49-135 7-70 (77)
412 4a4j_A Pacszia, cation-transpo 51.1 49 0.0017 23.0 6.7 59 109-173 3-64 (69)
413 2npt_B Mitogen-activated prote 49.0 36 0.0012 27.1 5.7 59 116-182 35-94 (100)
414 2l3m_A Copper-ION-binding prot 46.4 57 0.002 22.4 6.4 59 109-173 6-68 (71)
415 2xmw_A PACS-N, cation-transpor 46.2 64 0.0022 22.0 6.6 58 109-172 4-64 (71)
416 2jrh_A Mitogen-activated prote 45.8 46 0.0016 26.2 5.8 63 117-187 20-83 (94)
417 2hiy_A Hypothetical protein; C 45.2 1.2E+02 0.0043 26.7 9.6 126 7-159 8-144 (183)
418 1yg0_A COP associated protein; 45.1 56 0.0019 21.9 6.1 56 111-172 4-62 (66)
419 4hhu_A OR280; engineered prote 44.5 43 0.0015 27.7 5.8 70 110-184 43-128 (170)
420 2l69_A Rossmann 2X3 fold prote 44.0 40 0.0014 26.7 5.3 23 150-172 99-121 (134)
421 4bby_A Alkyldihydroxyacetoneph 43.3 82 0.0028 33.6 9.6 55 11-66 349-407 (658)
422 3j21_T 50S ribosomal protein L 43.0 51 0.0017 25.7 5.8 51 117-170 30-82 (86)
423 2c60_A Human mitogen-activated 42.8 35 0.0012 27.5 4.8 60 116-183 46-106 (111)
424 3lfj_A Manxb, phosphotransfera 42.1 15 0.00053 33.0 3.1 30 46-77 96-125 (187)
425 1osd_A MERP, hypothetical prot 41.9 81 0.0028 21.5 7.3 58 109-172 4-65 (72)
426 2inr_A DNA topoisomerase 4 sub 40.8 48 0.0017 34.4 6.9 60 5-66 275-338 (514)
427 1cpz_A Protein (COPZ); copper 40.5 81 0.0028 21.2 8.1 56 111-172 3-62 (68)
428 1l6j_A Matrix metalloproteinas 40.3 32 0.0011 34.9 5.4 21 15-35 18-39 (425)
429 3re1_A Uroporphyrinogen-III sy 39.6 81 0.0028 29.3 7.9 167 1-172 10-213 (269)
430 1kvi_A Copper-transporting ATP 39.3 99 0.0034 21.8 8.7 60 108-173 8-71 (79)
431 3ilw_A DNA gyrase subunit A; D 39.3 38 0.0013 34.8 5.8 61 4-65 235-299 (470)
432 1q4r_A Protein AT3G17210; cent 38.5 1E+02 0.0035 24.6 7.4 57 112-168 14-81 (112)
433 2kt2_A Mercuric reductase; nme 37.6 94 0.0032 21.1 6.9 56 111-172 3-61 (69)
434 1vd2_A Protein kinase C, IOTA 36.8 1.2E+02 0.004 23.8 7.1 55 112-172 17-75 (89)
435 3bb5_A Stress responsive alpha 36.4 1.7E+02 0.0059 23.7 8.7 59 110-168 22-91 (121)
436 3cjk_B Copper-transporting ATP 35.4 1.1E+02 0.0038 21.2 7.0 58 110-173 4-65 (75)
437 1q8l_A Copper-transporting ATP 35.4 1.2E+02 0.0043 21.8 8.6 60 108-173 9-72 (84)
438 2ofg_X Zinc-transporting ATPas 35.3 1.4E+02 0.0047 23.3 7.7 60 108-173 8-71 (111)
439 2qyc_A Ferredoxin-like protein 35.3 1.1E+02 0.0039 23.8 7.1 54 113-167 9-72 (103)
440 1yjr_A Copper-transporting ATP 35.0 62 0.0021 22.4 5.0 58 109-172 5-66 (75)
441 2xzm_P RPS24E; ribosome, trans 34.8 48 0.0016 28.6 4.8 49 119-168 31-84 (149)
442 3ezj_A General secretion pathw 34.8 43 0.0015 30.8 5.0 113 14-133 10-133 (241)
443 1eak_A 72 kDa type IV collagen 34.8 54 0.0018 33.2 6.0 96 17-131 13-114 (421)
444 4e8u_A Putative uncharacterize 34.4 57 0.002 28.8 5.4 49 7-58 14-73 (172)
445 1mwy_A ZNTA; open-faced beta-s 34.4 1.1E+02 0.0039 21.1 8.0 58 109-172 4-63 (73)
446 4es6_A Uroporphyrinogen-III sy 33.4 1.7E+02 0.0059 26.5 9.1 163 5-172 6-205 (254)
447 1aw0_A Menkes copper-transport 32.4 82 0.0028 21.5 5.3 57 110-172 5-65 (72)
448 3bb5_A Stress responsive alpha 31.9 1.8E+02 0.0062 23.6 8.0 60 6-65 22-92 (121)
449 2i9x_A Putative septation prot 31.6 48 0.0017 25.9 4.0 27 135-161 5-31 (87)
450 3lpe_A Putative transcription 31.4 87 0.003 24.4 5.6 32 136-172 40-71 (92)
451 2qif_A Copper chaperone COPZ; 30.8 1.2E+02 0.004 20.1 7.0 58 110-173 4-65 (69)
452 2kyz_A Heavy metal binding pro 30.6 68 0.0023 22.0 4.5 55 111-172 4-58 (67)
453 3mw8_A Uroporphyrinogen-III sy 30.2 1.9E+02 0.0064 26.0 8.6 161 7-172 3-192 (240)
454 2xcs_B DNA gyrase subunit B, D 30.1 49 0.0017 35.7 5.0 59 5-65 457-520 (692)
455 4ev1_A Anabena TIC22; TIC22 fo 29.7 2.4E+02 0.0083 26.3 9.3 18 49-66 43-60 (252)
456 1opz_A Potential copper-transp 29.7 1.3E+02 0.0046 20.4 8.4 59 108-172 6-68 (76)
457 2crl_A Copper chaperone for su 29.5 1.4E+02 0.0047 22.9 6.6 59 108-173 19-78 (98)
458 2g1d_A 30S ribosomal protein S 29.4 40 0.0014 27.0 3.3 51 119-170 29-84 (98)
459 2ia9_A Putative septation prot 28.2 58 0.002 26.2 4.0 27 135-161 5-31 (100)
460 3lpx_A GYRA, DNA gyrase, A sub 28.0 78 0.0027 32.7 5.9 60 4-65 225-288 (500)
461 3lpe_A Putative transcription 27.8 1.1E+02 0.0038 23.7 5.7 44 18-66 21-69 (92)
462 3iwl_A Copper transport protei 27.7 1.5E+02 0.0053 20.5 6.4 57 109-173 3-60 (68)
463 3bgu_A Ferredoxin-like protein 27.6 84 0.0029 25.5 5.1 57 111-168 24-90 (116)
464 1fvq_A Copper-transporting ATP 26.9 1.2E+02 0.0041 20.6 5.4 57 110-172 4-63 (72)
465 3h7h_B Transcription elongatio 26.6 1E+02 0.0036 24.8 5.4 26 46-71 50-75 (106)
466 1y3j_A Copper-transporting ATP 26.5 86 0.0029 22.1 4.6 59 109-173 4-66 (77)
467 2i9z_A Putative septation prot 26.4 66 0.0023 26.1 4.1 27 135-161 5-31 (105)
468 3hf5_A 4-methylmuconolactone m 26.4 1.5E+02 0.005 24.2 6.4 55 116-170 18-90 (116)
469 1q4r_A Protein AT3G17210; cent 26.2 1.6E+02 0.0054 23.4 6.5 59 7-65 13-82 (112)
470 2kpo_A Rossmann 2X2 fold prote 26.1 81 0.0028 24.2 4.2 46 121-179 33-80 (110)
471 1yjr_A Copper-transporting ATP 25.9 1.6E+02 0.0055 20.1 7.5 50 1-56 1-50 (75)
472 2ldi_A Zinc-transporting ATPas 25.9 1.5E+02 0.0051 19.7 5.9 57 110-172 5-65 (71)
473 3pm9_A Putative oxidoreductase 25.9 2E+02 0.0068 29.3 8.7 54 13-67 194-251 (476)
474 3fry_A Probable copper-exporti 25.8 1.5E+02 0.0052 20.8 5.8 54 5-65 6-59 (73)
475 1vq8_S 50S ribosomal protein L 25.5 97 0.0033 24.0 4.8 45 116-163 28-74 (85)
476 3u5e_X 60S ribosomal protein L 24.8 1.1E+02 0.0037 26.2 5.3 49 116-167 85-136 (142)
477 2k2p_A Uncharacterized protein 24.7 1.1E+02 0.0039 22.7 5.1 60 108-173 22-82 (85)
478 3uzu_A Ribosomal RNA small sub 24.4 32 0.0011 32.6 2.2 44 6-65 115-158 (279)
479 1i4w_A Mitochondrial replicati 24.4 53 0.0018 32.4 3.8 22 7-28 144-165 (353)
480 1x8d_A Hypothetical protein YI 24.3 1.3E+02 0.0046 24.0 5.6 42 123-168 26-67 (104)
481 1xn9_A 30S ribosomal protein S 24.2 1.6E+02 0.0056 23.5 6.0 55 15-71 28-87 (101)
482 3h7h_B Transcription elongatio 23.9 1.4E+02 0.0048 24.0 5.7 23 150-172 50-72 (106)
483 1mli_A Muconolactone isomerase 23.9 2.7E+02 0.0093 22.0 8.0 65 11-79 9-83 (96)
484 4a17_R RPL23A, 60S ribosomal p 23.9 1.1E+02 0.0038 26.3 5.2 48 117-167 94-144 (150)
485 2qyc_A Ferredoxin-like protein 23.4 2.2E+02 0.0074 22.1 6.8 57 8-65 8-74 (103)
486 1tr0_A Stable protein 1; plant 23.4 2.5E+02 0.0087 21.9 7.2 65 1-65 1-82 (108)
487 1vd2_A Protein kinase C, IOTA 23.2 2.6E+02 0.0088 21.7 6.9 53 8-65 17-72 (89)
488 3fut_A Dimethyladenosine trans 23.1 51 0.0018 31.1 3.3 43 6-65 111-153 (271)
489 2rop_A Copper-transporting ATP 22.2 3.7E+02 0.013 23.0 14.1 155 6-173 22-185 (202)
490 1ip9_A BEM1 protein; ubiquitin 21.7 67 0.0023 25.0 3.1 57 8-69 23-79 (85)
491 2g9o_A Copper-transporting ATP 21.7 1.2E+02 0.0042 22.5 4.8 56 110-171 5-64 (90)
492 3bn7_A Ferredoxin-like protein 21.5 2.7E+02 0.0094 22.4 7.2 56 112-167 24-92 (120)
493 2kjw_A TS9, 30S ribosomal prot 21.5 43 0.0015 26.6 2.0 59 49-133 7-68 (96)
494 1ip9_A BEM1 protein; ubiquitin 21.3 1.1E+02 0.0038 23.7 4.3 55 112-172 23-78 (85)
495 3bgu_A Ferredoxin-like protein 21.3 2E+02 0.0068 23.1 6.2 58 7-65 24-91 (116)
496 3lmz_A Putative sugar isomeras 21.0 4.3E+02 0.015 23.4 9.3 59 8-79 49-110 (257)
497 3iz5_X 60S ribosomal protein L 20.9 1E+02 0.0035 26.7 4.4 45 116-163 95-141 (152)
498 3d53_A Inorganic pyrophosphata 20.8 76 0.0026 28.1 3.7 39 18-67 131-169 (173)
499 2v94_A RPS24, 30S ribosomal pr 20.8 1.6E+02 0.0056 23.8 5.4 48 15-63 37-89 (107)
500 4a18_J EIF6, translation initi 20.4 3E+02 0.01 25.7 7.8 53 13-65 75-133 (248)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.2e-36 Score=278.30 Aligned_cols=178 Identities=43% Similarity=0.793 Sum_probs=151.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +.+.|.++.|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999999 5568999999999987
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
........ ......++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++
T Consensus 91 ~~~~~~~~--------------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 91 SREDSQRP--------------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp C-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccccc--------------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 65443221 1123568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCccCCcEEEEEEccCCCCCCCC
Q 035855 162 DAVDRVLQKTFHDLNGKQVEVKRALPKDANPGG 194 (456)
Q Consensus 162 eaa~aal~~~~~~l~Gr~I~V~~a~~k~~~~~g 194 (456)
++|++||+++++.|+|++|+|+++.+++.....
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC--------
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCChhHhccc
Confidence 999999998779999999999999998876543
No 2
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.7e-36 Score=269.19 Aligned_cols=166 Identities=45% Similarity=0.945 Sum_probs=155.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecchh
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~~ 83 (456)
++++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||++.+.|+++.|.++++.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 57999999999999999999999999999999999999999999999999999999999999888999999999998776
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
.+.. +.++|||.|||.++|+++|+++|++||.|++|+|+.|+.+++++|||||+|+++++
T Consensus 82 ~~~~--------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 82 DEQD--------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp HHHH--------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred hhcc--------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 5432 34789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccCCcEEEEEEccCCC
Q 035855 164 VDRVLQKTFHDLNGKQVEVKRALPKD 189 (456)
Q Consensus 164 a~aal~~~~~~l~Gr~I~V~~a~~k~ 189 (456)
|++|++++...|++++|+|+++.+|+
T Consensus 142 a~~A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 142 VDRVCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHHCSEECSSSSCEEEEECCCCC
T ss_pred HHHHHhCCCEEeCCeEEEEeecCCCC
Confidence 99999965599999999999999874
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-34 Score=272.52 Aligned_cols=166 Identities=26% Similarity=0.478 Sum_probs=149.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++||++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +...+.++.|.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45899999999999999999999999999999999999999999999999999999999998 5567899999998887
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
........ ..++|||.|||+++|+++|+++|++||.|++|+|++|+. .++|||||+|+++
T Consensus 94 ~~~~~~~~------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~ 153 (213)
T 4f02_A 94 RDPSLRKS------------------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQ 153 (213)
T ss_dssp CCTHHHHH------------------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSH
T ss_pred cccccccc------------------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCH
Confidence 65444332 346899999999999999999999999999999999864 4799999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
++|++||+.++ +.|++++|+|+++.++.
T Consensus 154 ~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 154 EAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999998766 99999999999998764
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.6e-34 Score=265.57 Aligned_cols=180 Identities=21% Similarity=0.432 Sum_probs=153.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35899999999999999999999999999999999999899999999999999999999998 5668999999998876
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
............. ......++|||.|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|+++
T Consensus 107 ~~~~~~~~~~~~~---------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPIIDQLA---------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHHHHHH---------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhhhhhh---------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 5443221110000 0013568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccCCCCCC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALPKDANP 192 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~~ 192 (456)
++|++|++.++ +.|++++|+|+++.++....
T Consensus 178 ~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred HHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 99999999766 99999999999999876543
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-33 Score=250.72 Aligned_cols=163 Identities=23% Similarity=0.469 Sum_probs=147.3
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~ 83 (456)
|+|||+|||+++|+++|+++|++||+|.+|+|++++ ++++++||||+|.+.++|++||+ +...+.++.|.|+++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 699999999999999999999999999999999987 47799999999999999999997 566899999999988543
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
.. ....+.++|||.|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++
T Consensus 80 ~~------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 141 (166)
T 3md3_A 80 QQ------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 141 (166)
T ss_dssp CC------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHH
T ss_pred CC------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Confidence 21 112356899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC-CccCCcEEEEEEccC
Q 035855 164 VDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 164 a~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
|++|++.++ ..|++++|+|+++++
T Consensus 142 A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 142 AQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHHHHTTCEETTEECEEEESCC
T ss_pred HHHHHHHhCCCccCCcEEEEEecCC
Confidence 999998666 999999999999863
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=9.3e-33 Score=247.69 Aligned_cols=162 Identities=28% Similarity=0.531 Sum_probs=147.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
++++|||+|||+++|+++|+++|++||+|.+++|++++.++++++||||+|.++++|++||+ +...+.++.|.|+++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999998 5668999999999886
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+... ..+.++|||.|||.++|+++|+++|++||.|++|+|+.++.++++++||||+|+++
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 4322 12457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCcE--EEEEEc
Q 035855 162 DAVDRVLQKTF-HDLNGKQ--VEVKRA 185 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~--I~V~~a 185 (456)
++|++|++.++ +.|+++. |+|++|
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999998666 8999965 888775
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.1e-33 Score=250.88 Aligned_cols=162 Identities=22% Similarity=0.435 Sum_probs=148.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +...|.+++|.|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999999899999999999999999999998 5668899999999886
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+..+ ..+.++|||.|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|+++
T Consensus 82 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGE--------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSS--------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 4321 13568999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHcC-CccCC--cEEEEEEc
Q 035855 162 DAVDRVLQKTF-HDLNG--KQVEVKRA 185 (456)
Q Consensus 162 eaa~aal~~~~-~~l~G--r~I~V~~a 185 (456)
++|++|++.++ +.|++ ++|+|++|
T Consensus 142 ~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999998666 88977 99999986
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.7e-32 Score=245.92 Aligned_cols=164 Identities=26% Similarity=0.442 Sum_probs=142.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHcCC--cCC---CceE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTG--RPRGFGFVVFADPSILDRVLQDKH--SLD---GRTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg--~srGfaFVeF~d~e~A~kAl~~~~--~l~---Gr~I 75 (456)
++.++|||+|||+++||++|+++|++||+|++|+|++++.++ ++++||||+|.++++|++||+.++ .+. .+.|
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 578999999999999999999999999999999999999876 899999999999999999998433 333 5677
Q ss_pred EEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEE
Q 035855 76 EAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGF 155 (456)
Q Consensus 76 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAF 155 (456)
.+.++...... ..+.++|||.|||+++|+++|+++|++||.|++|+|++++. ++++||||
T Consensus 81 ~~~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~af 140 (175)
T 3nmr_A 81 QMKPADSEKNN-------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAF 140 (175)
T ss_dssp EEEECGGGCCS-------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEE
T ss_pred EEccccccccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEE
Confidence 77766543211 23668999999999999999999999999999999999964 88999999
Q ss_pred EEeCCHHHHHHHHHHcC-CccC---CcEEEEEEcc
Q 035855 156 ISFDTEDAVDRVLQKTF-HDLN---GKQVEVKRAL 186 (456)
Q Consensus 156 V~F~s~eaa~aal~~~~-~~l~---Gr~I~V~~a~ 186 (456)
|+|+++++|++|++.++ ..+. +++|+|++|.
T Consensus 141 V~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 141 VTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999998777 5565 4999999873
No 9
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.8e-33 Score=258.95 Aligned_cols=183 Identities=19% Similarity=0.367 Sum_probs=146.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY----G-------DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSL 70 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l 70 (456)
...++|||+|||+++||++|+++|++| + .|.++.+ .++++||||+|.++++|++||+ +.+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~ 75 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIF 75 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEE
Confidence 357999999999999999999999999 4 4555544 3457999999999999999996 45579
Q ss_pred CCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCc
Q 035855 71 DGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRP 150 (456)
Q Consensus 71 ~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~ 150 (456)
.++.|.|+++...........................+.++|||.|||.++|+++|+++|++||.|++|+|++++.++++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999886543221111111111111111223357799999999999999999999999999999999999999999
Q ss_pred ceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 151 RGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 151 rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
+|||||+|+++++|++|++.++ ..|++++|+|+++.++..+
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999998665 9999999999999987653
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=6.7e-32 Score=245.36 Aligned_cols=163 Identities=20% Similarity=0.360 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++|+++|+++|++|+.|.. +++.+..+++++|||||+|.++++|++||+ +...|.++.|.|+++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCC
Confidence 46799999999999999999999999998877 445555688999999999999999999997 5568999999999886
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
++... ...+.++|||.|||.++|+++|+++|++|+.|+.+ ..+++++|||||+|+++
T Consensus 90 ~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 90 GRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred Ccccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 54221 12367899999999999999999999999987665 56688999999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
++|++||+.++ +.|++++|+|+++.+|+
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 99999999766 99999999999999874
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=5.5e-31 Score=238.12 Aligned_cols=157 Identities=22% Similarity=0.471 Sum_probs=138.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCC
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY----G-------DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLD 71 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~ 71 (456)
++++|||+|||+++|+++|+++|++| + .|.++.+.+ +++||||+|.++++|++||+ +.+.|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 57999999999999999999999999 6 666666654 46999999999999999996 456789
Q ss_pred CceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcc
Q 035855 72 GRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPR 151 (456)
Q Consensus 72 Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~r 151 (456)
++.|.|+++..... ....++|||.|||.++|+++|+++|++||.|++|+|++++.+++++
T Consensus 77 g~~i~v~~~~~~~~--------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~ 136 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP--------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 136 (172)
T ss_dssp TEECEEECCSSCCC--------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEE
T ss_pred CceeeecCCcccCC--------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcc
Confidence 99999987643211 1236889999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 152 GFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 152 GfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
|||||+|+++++|++|++.++ +.|++++|+|++|.
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 137 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999998665 99999999999974
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.9e-30 Score=250.08 Aligned_cols=176 Identities=16% Similarity=0.282 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLR----EYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~----e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~ 76 (456)
..+++|||+|||+++|+++|+ ++|++||+|++|+|++ ++++||||||+|.+.++|++||+ +...|.++.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467999999999999999977 9999999999999886 67899999999999999999997 55689999999
Q ss_pred EEecchhHHHhhhcccCC-----------------------CC-----------------------C-------------
Q 035855 77 AKRAMSREEQQFSARSGN-----------------------TN-----------------------S------------- 97 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~-----------------------~~-----------------------~------------- 97 (456)
|+++.............. .. .
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 998865442100000000 00 0
Q ss_pred --------------------------------CCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecC
Q 035855 98 --------------------------------GRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQ 145 (456)
Q Consensus 98 --------------------------------~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~ 145 (456)
..........+.++|||.|||.++|+++|+++|++||.|++|+|+.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 000001223466889999999999999999999999999999999664
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcC-CccC-CcEEEEEEcc
Q 035855 146 NTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN-GKQVEVKRAL 186 (456)
Q Consensus 146 ~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~-Gr~I~V~~a~ 186 (456)
+|||||+|+++++|++||+.++ ..|+ +++|+|+|++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5799999999999999999777 8899 9999999986
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.9e-30 Score=250.30 Aligned_cols=170 Identities=16% Similarity=0.308 Sum_probs=153.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..+++|||+|||+++|+++|+++|++||+|..++|+.++.+++++|||||+|.+.++|++||+ +...|.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999997 566899999999998
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCC-CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTL-TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD 159 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~-teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~ 159 (456)
.+..... ...+.++|||.|||+++ |+++|+++|++||.|++|+|++|+ +++++|||||+|+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~ 234 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYE 234 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeC
Confidence 7643211 12356899999999995 999999999999999999999987 6899999999999
Q ss_pred CHHHHHHHHHHcC-CccCCcEEEEEEccCCCC
Q 035855 160 TEDAVDRVLQKTF-HDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 160 s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~ 190 (456)
++++|++|++.++ +.|++++|+|+++.+++.
T Consensus 235 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 235 TAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999998766 999999999999998765
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=6e-30 Score=240.91 Aligned_cols=176 Identities=16% Similarity=0.232 Sum_probs=138.0
Q ss_pred CCCcEEEEcCCC-ccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGIS-WETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP-~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
.+.++|||+||| +++|+++|+++|++||+|++|+|++++ ||||||+|.++++|++||+ +..+|.++.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 367899999999 899999999999999999999998753 6999999999999999998 56789999999998
Q ss_pred cchhHHHhhhc----------cc-CCCCCCCC------CCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCce--eEEE
Q 035855 80 AMSREEQQFSA----------RS-GNTNSGRS------NGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHV--TDVV 140 (456)
Q Consensus 80 a~~~~~~~~~~----------~~-~~~~~~~~------~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V--~~v~ 140 (456)
++.+....... .. ......+. .......+.++|||.|||+++||++|+++|++||.| ++|+
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 86432110000 00 00000000 000112457899999999999999999999999999 8999
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCc----EEEEEEc
Q 035855 141 IMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGK----QVEVKRA 185 (456)
Q Consensus 141 i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr----~I~V~~a 185 (456)
|+.++ .+.+|||||+|+++++|++||+.++ .+|+++ ++.|+++
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 98775 4557999999999999999988777 888887 5777765
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.3e-30 Score=251.58 Aligned_cols=171 Identities=17% Similarity=0.292 Sum_probs=142.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
+.++|||+|||+++|+++|+++|++|| +|..|.|+.++. +++++||||+|.+.++|++||+ +.+.|.++.|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999875 7899999999999999999999 566899999999998
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCC-CCHHHHHHHHHhcCceeEEEEeecCC-CCCcceEEEEEe
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPT-LTEDGFRQYFEAYGHVTDVVIMYDQN-TQRPRGFGFISF 158 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~i~~d~~-tg~~rGfAFV~F 158 (456)
.+....... .....+.++|||.|||.+ +|+++|+++|++||.|++|+|++++. |++++|||||+|
T Consensus 195 ~~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F 261 (292)
T 2ghp_A 195 NPLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 261 (292)
T ss_dssp CCC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEE
T ss_pred CCCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEe
Confidence 765443221 011246789999999999 99999999999999999999999887 689999999999
Q ss_pred CCHHHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 159 DTEDAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 159 ~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
+++++|++|| .++ +.|++++|+|+++.+|+
T Consensus 262 ~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 262 ENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp SSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999999999 555 99999999999999874
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2e-29 Score=240.40 Aligned_cols=176 Identities=18% Similarity=0.290 Sum_probs=141.7
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
.+.++|||+|||+ ++|+++|+++|++||+|++|+|++++ ++||||+|.++++|++||+ +...|.++.|.|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4679999999999 99999999999999999999999875 6899999999999999997 56789999999998
Q ss_pred cchhHHHhhhcccC---------CCCCCC------CCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEee
Q 035855 80 AMSREEQQFSARSG---------NTNSGR------SNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMY 143 (456)
Q Consensus 80 a~~~~~~~~~~~~~---------~~~~~~------~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~ 143 (456)
+..+.......... ...... ........+.++|||.|||.++|+++|+++|++|| .|++|+|+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 86542211100000 000000 00011134578999999999999999999999999 999999975
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC-CcEEEEEEccCC
Q 035855 144 DQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN-GKQVEVKRALPK 188 (456)
Q Consensus 144 d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~-Gr~I~V~~a~~k 188 (456)
+ .++||||+|+++++|++||+.++ ..|+ +++|+|++++++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3 36799999999999999998666 8999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.4e-29 Score=235.05 Aligned_cols=175 Identities=17% Similarity=0.301 Sum_probs=141.6
Q ss_pred CCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
++++|||+|||+ ++|+++|+++|++||+|++|+|++++ ++||||+|.++++|++||+ +...|.++.|.|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 578999999999 99999999999999999999999875 6899999999999999998 566899999999988
Q ss_pred chhHHHhhhcccCC---------------CCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeec
Q 035855 81 MSREEQQFSARSGN---------------TNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYD 144 (456)
Q Consensus 81 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d 144 (456)
.............. .............++++|||.|||.++|+++|+++|++|| .|++|+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 75432111100000 0000001111234689999999999999999999999999 9999999764
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC-CcEEEEEEccCC
Q 035855 145 QNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN-GKQVEVKRALPK 188 (456)
Q Consensus 145 ~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~-Gr~I~V~~a~~k 188 (456)
. +++|||+|+++++|++|++.++ +.|+ +++|+|++++++
T Consensus 157 ~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 D-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2 6799999999999999998666 8899 999999999864
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.4e-28 Score=242.01 Aligned_cols=160 Identities=11% Similarity=0.233 Sum_probs=135.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.. +++||||+|.++++|++||+ +...|.++.|.|.++
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999998744 57999999999999999997 456789999999874
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFD 159 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~ 159 (456)
..++|||.|||+++|+++|+++|++|| .|+.|+|++++. +++++||||+|.
T Consensus 116 ---------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~ 167 (292)
T 2ghp_A 116 ---------------------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVT 167 (292)
T ss_dssp ---------------------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECS
T ss_pred ---------------------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEEC
Confidence 357899999999999999999999999 999999998876 778999999999
Q ss_pred CHHHHHHHHHHcC-CccCCcEEEEEEccCCCCC
Q 035855 160 TEDAVDRVLQKTF-HDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 160 s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~ 191 (456)
++++|++|++.++ +.|++++|.|+++.++...
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 9999999999555 9999999999999876543
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=3.8e-28 Score=237.91 Aligned_cols=154 Identities=18% Similarity=0.414 Sum_probs=140.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
+.++|||+|||+++|+++|+++|++|| |++|++ ++++|||||+|.++++|++||+ +...|.++.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 578999999999999999999999999 988888 3467899999999999999998 5567999999998742
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+.++|||.|||+++|+++|+++|++||.|+.|+|++|+.+++++|||||+|.++
T Consensus 94 --------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 147 (284)
T 3smz_A 94 --------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKK 147 (284)
T ss_dssp --------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred --------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCH
Confidence 347899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CccCCcEEEEEEccCCCC
Q 035855 162 DAVDRVLQKTF-HDLNGKQVEVKRALPKDA 190 (456)
Q Consensus 162 eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~ 190 (456)
++|++|++.++ ..|++++|.|+++.++..
T Consensus 148 ~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 148 DSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 99999996665 999999999999987654
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=2.2e-28 Score=237.91 Aligned_cols=155 Identities=24% Similarity=0.459 Sum_probs=139.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|.+|+|+++ ++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34589999999999999999999999999999999754 5899999999999999998 567899999999987
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT 160 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s 160 (456)
. +.++|||.|||.++|+++|+++|++||.|++|+|+.| .+++++|||||+|++
T Consensus 94 ~--------------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 94 T--------------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAA 146 (261)
T ss_dssp C--------------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESS
T ss_pred c--------------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCC
Confidence 4 2468999999999999999999999999999999999 579999999999999
Q ss_pred HHHHHHHHHHcC--CccC---CcEEEEEEccCCCC
Q 035855 161 EDAVDRVLQKTF--HDLN---GKQVEVKRALPKDA 190 (456)
Q Consensus 161 ~eaa~aal~~~~--~~l~---Gr~I~V~~a~~k~~ 190 (456)
+++|++||+.++ ..+. +++|.|+++.+++.
T Consensus 147 ~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 147 KPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp HHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred HHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 999999998873 3333 99999999987654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=8e-23 Score=183.41 Aligned_cols=148 Identities=21% Similarity=0.261 Sum_probs=111.5
Q ss_pred EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC---cCCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCccccc
Q 035855 34 QTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH---SLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTK 110 (456)
Q Consensus 34 ~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~---~l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (456)
.++|+.+.. +++||+||+|.++++|++||+..+ .+++. +.+........... ............+.+
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 71 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGE-WTYDDATKTFTVTE-------GSHHHHHHMDVEGMT 71 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCE-EEEETTTTEEEEEC-------CCCCSSCCCCCCBCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCc-ccccCccccccccc-------cccccccccCCCCCC
Confidence 466776654 689999999999999999997322 33332 22221111100000 000011112234678
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
+|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|+++.++.
T Consensus 72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999998766 89999999999999865
Q ss_pred CC
Q 035855 190 AN 191 (456)
Q Consensus 190 ~~ 191 (456)
..
T Consensus 152 ~~ 153 (158)
T 2kn4_A 152 PP 153 (158)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=1.5e-21 Score=203.36 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=112.9
Q ss_pred HHHHHHhcCCCeeEEEEeec----C-CCCCcceEE--EEEeCCHHHHHHHHHcCCc--CCCceEEEEecchhHHHhhhcc
Q 035855 21 RLREYFSQYGDVLQTVVMRE----K-TTGRPRGFG--FVVFADPSILDRVLQDKHS--LDGRTVEAKRAMSREEQQFSAR 91 (456)
Q Consensus 21 ~L~e~F~~~G~V~~v~i~~d----~-~tg~srGfa--FVeF~d~e~A~kAl~~~~~--l~Gr~I~v~~a~~~~~~~~~~~ 91 (456)
.|.++|.++++|..|..+.. + .+....+++ |++|.+..++..++..... +..+.. ..+....+.....
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~---~~k~~~~~~~~~~ 84 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKR---REKIERRQQEVET 84 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 38899999999988754432 1 122223333 7788776655544431111 000000 0000000000000
Q ss_pred cCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 92 SGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
................+.++|||.|||++||+++|+++|++||.|+.|.|+.|+.+++++|||||+|+++++|++||+.+
T Consensus 85 ~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 85 ELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 00011111111222356789999999999999999999999999999999999999999999999999999999999877
Q ss_pred C-CccCCcEEEEEEccCCCCCCC
Q 035855 172 F-HDLNGKQVEVKRALPKDANPG 193 (456)
Q Consensus 172 ~-~~l~Gr~I~V~~a~~k~~~~~ 193 (456)
+ +.|++++|.|+++.++.....
T Consensus 165 ng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred CCCEECCEEEEEEEeCCCCCCCC
Confidence 7 999999999999998765443
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=3.1e-21 Score=164.58 Aligned_cols=108 Identities=22% Similarity=0.435 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++||++|+++|++||+|++|+|++++ ..+||||||+|.++++|++||+ +.++|+++.|.|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 46799999999999999999999999999999999986 3489999999999999999998 5678999999999987
Q ss_pred hhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHH
Q 035855 82 SREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125 (456)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teed 125 (456)
++.++..... .......+|||.|||+++|++.
T Consensus 82 ~~~~~~~~~~------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------------------
T ss_pred Cccccccccc------------cccCCCCceEeCCCCCCccccc
Confidence 6543322111 1112446799999999999874
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.3e-20 Score=167.89 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=109.1
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHc---CCcCCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCC
Q 035855 43 TGRPRGFGFVVFADPSILDRVLQD---KHSLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPP 119 (456)
Q Consensus 43 tg~srGfaFVeF~d~e~A~kAl~~---~~~l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~ 119 (456)
..+.+|+++|+|.+.++|++||+. ..+|++ .|.++++..+....... .............+.++|||+|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----HHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----SSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----ccccccccccCCCCCCEEEEeCCCC
Confidence 346789999999999999999974 458999 99998775433221110 0111112223345779999999999
Q ss_pred CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCC
Q 035855 120 TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKD 189 (456)
Q Consensus 120 ~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~ 189 (456)
++|+++|+++|++||.|++|+|++| ++|||||+|+++++|++||+.++ +.|++++|+|++++++.
T Consensus 84 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 84 NGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999999876 57899999999999999998655 89999999999998864
No 25
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=2e-19 Score=161.16 Aligned_cols=86 Identities=14% Similarity=0.303 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999999766 9999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
+++....
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 9866543
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=149.59 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=76.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 355789999999999999999999999999999999999999999999999999999999998766 9999999999999
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=145.68 Aligned_cols=88 Identities=50% Similarity=0.960 Sum_probs=81.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+++.+.|++++|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35779999999999999999999999999999999999999999999999999999999999996669999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
.++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2dgs_A 87 EPRDSKSS 94 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCcccCC
Confidence 98876554
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=148.44 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=77.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC--CccCCcEEEEEEc
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF--HDLNGKQVEVKRA 185 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~--~~l~Gr~I~V~~a 185 (456)
+++|||+|||+++||+||+++|++|| +|++|+|++|+.|+++||||||+|+++++|++||+.+. ..|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998763 6799999999999
Q ss_pred cCCCCC
Q 035855 186 LPKDAN 191 (456)
Q Consensus 186 ~~k~~~ 191 (456)
.+++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.7e-19 Score=143.44 Aligned_cols=86 Identities=29% Similarity=0.590 Sum_probs=80.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||.++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 367899999999999999999999999999999999999999999999999999999999999665 9999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 9887643
No 30
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=152.23 Aligned_cols=89 Identities=27% Similarity=0.523 Sum_probs=82.0
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
...+.++|||+|||.++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|++++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999999999999999999999999999999999766 89999999999
Q ss_pred EccCCCCCCC
Q 035855 184 RALPKDANPG 193 (456)
Q Consensus 184 ~a~~k~~~~~ 193 (456)
+++++..+..
T Consensus 118 ~a~~~~~~~~ 127 (139)
T 1u6f_A 118 LAASGHQRPG 127 (139)
T ss_dssp ESSCCCCCCC
T ss_pred ECCCCCCCCC
Confidence 9998876543
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=145.25 Aligned_cols=88 Identities=33% Similarity=0.628 Sum_probs=81.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3577899999999999999999999999999999999999999999999999999999999997666 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++...+.
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876544
No 32
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=145.84 Aligned_cols=87 Identities=30% Similarity=0.604 Sum_probs=81.1
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
...+.++|||.|||+++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++..|++++|+|++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 92 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNL 92 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
+.++...
T Consensus 93 a~~~~~~ 99 (116)
T 2cqd_A 93 AYLGAKP 99 (116)
T ss_dssp STTTCCC
T ss_pred cccCCCc
Confidence 9876543
No 33
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=1.5e-18 Score=147.45 Aligned_cols=88 Identities=20% Similarity=0.403 Sum_probs=81.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3466899999999999999999999999999999999999999999999999999999999997766 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++.....
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 998876544
No 34
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=146.19 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++||||||+|.++++|++||+ +..+|.+++|.|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999999999999999999999999999998 567899999999998
Q ss_pred ch
Q 035855 81 MS 82 (456)
Q Consensus 81 ~~ 82 (456)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=142.97 Aligned_cols=86 Identities=22% Similarity=0.422 Sum_probs=80.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467999999999999999999999999999999999999999999999999999999999997766 8999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
+++....
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9887653
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=144.63 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=81.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3577999999999999999999999999999999999999999999999999999999999999766 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
+.++.....
T Consensus 92 a~~~~~~~~ 100 (105)
T 1x5u_A 92 ASAHNKNLS 100 (105)
T ss_dssp TTTTSCCCC
T ss_pred CCCCCcCCC
Confidence 998876543
No 37
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=148.44 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=78.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++||++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 467899999999999999999999999999999999999999999999999999999999998766 9999999999999
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
..+.
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7654
No 38
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.5e-19 Score=159.18 Aligned_cols=141 Identities=13% Similarity=0.242 Sum_probs=79.3
Q ss_pred EEeCCHHHHHHHHHcCC----cCCCceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHH
Q 035855 52 VVFADPSILDRVLQDKH----SLDGRTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFR 127 (456)
Q Consensus 52 VeF~d~e~A~kAl~~~~----~l~Gr~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~ 127 (456)
.+|++.++|+.++.... ...++.+...+..............+.............+.++|||.|||+++|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78899999888886322 22233333333211110000000000000011112234567899999999999999999
Q ss_pred HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCCCCCC
Q 035855 128 QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPKDANP 192 (456)
Q Consensus 128 ~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k~~~~ 192 (456)
++|++||.|+.|.|++++.+++++|||||+|.++++|++||+.++ +.|++++|.|+++.++..+.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 999999999999999999999999999999999999999998666 89999999999999876543
No 39
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=3.9e-19 Score=156.11 Aligned_cols=86 Identities=27% Similarity=0.412 Sum_probs=79.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998766 899999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++...
T Consensus 124 a~~~~~~ 130 (135)
T 2lea_A 124 ARYGRPP 130 (135)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 40
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=143.19 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=79.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||+++|+++|+++|++|+ |++|+|++|+.+++++|||||+|+++++|++||+++.+.|++++|+|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 45679999999999999999999999996 99999999999999999999999999999999955559999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
.++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2dng_A 91 EGRKQDKS 98 (103)
T ss_dssp CCCCCCCS
T ss_pred cCCCCCCC
Confidence 98776543
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=143.44 Aligned_cols=87 Identities=21% Similarity=0.384 Sum_probs=81.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4577999999999999999999999999999999999999999999999999999999999999766 999999999999
Q ss_pred ccCCCCCC
Q 035855 185 ALPKDANP 192 (456)
Q Consensus 185 a~~k~~~~ 192 (456)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99887653
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=141.94 Aligned_cols=86 Identities=29% Similarity=0.501 Sum_probs=80.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDV-VIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v-~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.+.++|||.|||+++|+++|+++|++||.|++| +|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 999999999999999999999999999999666 899999999999
Q ss_pred ccCCCCCC
Q 035855 185 ALPKDANP 192 (456)
Q Consensus 185 a~~k~~~~ 192 (456)
+.++..+.
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99887653
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=143.89 Aligned_cols=87 Identities=22% Similarity=0.431 Sum_probs=79.5
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNT-QRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~t-g~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++|| |++|+|++|+.+ ++++|||||+|+++++|++||+++.+.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34679999999999999999999999999 999999999998 9999999999999999999995555999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
+.++..+.+
T Consensus 91 a~~~~~~~~ 99 (104)
T 1wi8_A 91 ADQAQDKDS 99 (104)
T ss_dssp CCCCCCCCC
T ss_pred ccCCCCCCC
Confidence 999876543
No 44
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=147.80 Aligned_cols=88 Identities=36% Similarity=0.733 Sum_probs=81.8
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.+.+.|++++|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999559999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
.++.....
T Consensus 104 ~~~~~~~~ 111 (116)
T 1x4b_A 104 VAREESGS 111 (116)
T ss_dssp SSCCCCCC
T ss_pred CCCccCCC
Confidence 99876543
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=144.02 Aligned_cols=88 Identities=24% Similarity=0.513 Sum_probs=81.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999997666 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++..+..
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876544
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=142.74 Aligned_cols=88 Identities=23% Similarity=0.405 Sum_probs=81.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHHc-C-CccCCcEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYD-QNTQRPRGFGFISFDTEDAVDRVLQKT-F-HDLNGKQVEV 182 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d-~~tg~~rGfAFV~F~s~eaa~aal~~~-~-~~l~Gr~I~V 182 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+++ +.++++++||||+|+++++|++||+.+ + +.|++++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 457789999999999999999999999999999999999 889999999999999999999999887 4 9999999999
Q ss_pred EEccCCCCCCC
Q 035855 183 KRALPKDANPG 193 (456)
Q Consensus 183 ~~a~~k~~~~~ 193 (456)
++++++.....
T Consensus 92 ~~a~~~~~~~~ 102 (107)
T 2cph_A 92 EWADSEVTVQS 102 (107)
T ss_dssp EECCCCCCCCC
T ss_pred EeCCCCCCCCC
Confidence 99998876543
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=144.99 Aligned_cols=88 Identities=39% Similarity=0.731 Sum_probs=81.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+++.+.|++++|+|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45779999999999999999999999999999999999999999999999999999999999999559999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
.++...+.
T Consensus 93 ~~~~~~~~ 100 (105)
T 2dh8_A 93 TPRGMQPS 100 (105)
T ss_dssp CCSSCCTT
T ss_pred cCCCCCCC
Confidence 98876554
No 48
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3.5e-18 Score=142.78 Aligned_cols=88 Identities=18% Similarity=0.408 Sum_probs=80.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc---CCcEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL---NGKQVE 181 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l---~Gr~I~ 181 (456)
..+.++|||.|||.++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ ..+ ++++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 4577899999999999999999999999999999999999999999999999999999999998666 676 899999
Q ss_pred EEEccCCCCCCC
Q 035855 182 VKRALPKDANPG 193 (456)
Q Consensus 182 V~~a~~k~~~~~ 193 (456)
|+++.++..+..
T Consensus 90 v~~a~~~~~~~~ 101 (106)
T 2dgp_A 90 VKPADSESRGGS 101 (106)
T ss_dssp EEECCCCSCCCC
T ss_pred EEECCcccccCC
Confidence 999998776543
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=145.82 Aligned_cols=86 Identities=14% Similarity=0.239 Sum_probs=78.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+...++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+ +..+|+++.|.|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999998 55689999999999
Q ss_pred cchhHHHh
Q 035855 80 AMSREEQQ 87 (456)
Q Consensus 80 a~~~~~~~ 87 (456)
+.......
T Consensus 83 a~~~~~~~ 90 (110)
T 3s8s_A 83 DIKGQQRM 90 (110)
T ss_dssp CSTTHHHH
T ss_pred CCCCcHHH
Confidence 87655443
No 50
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.4e-18 Score=140.79 Aligned_cols=85 Identities=18% Similarity=0.447 Sum_probs=78.8
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+.++ ++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 89999999999999999999997766 899999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++..+
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9987653
No 51
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=5.5e-18 Score=143.82 Aligned_cols=88 Identities=27% Similarity=0.522 Sum_probs=81.5
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3577899999999999999999999999999999999999999999999999999999999998766 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++.....
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 998876543
No 52
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=138.10 Aligned_cols=83 Identities=27% Similarity=0.481 Sum_probs=75.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||.++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++|++.++ +.|++++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999766 9999999999999
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
++|+
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 53
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=143.33 Aligned_cols=87 Identities=26% Similarity=0.404 Sum_probs=80.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999998655 999999999999
Q ss_pred ccCCCCCC
Q 035855 185 ALPKDANP 192 (456)
Q Consensus 185 a~~k~~~~ 192 (456)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 99766543
No 54
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=140.61 Aligned_cols=86 Identities=28% Similarity=0.512 Sum_probs=80.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+. .+.|++++|+|+++.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEecC
Confidence 4678999999999999999999999999999999999999999999999999999999999984 578999999999999
Q ss_pred CCCCCCC
Q 035855 187 PKDANPG 193 (456)
Q Consensus 187 ~k~~~~~ 193 (456)
+++....
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqg_A 92 SKQSQDS 98 (103)
T ss_dssp TTCCCCC
T ss_pred CCCcCCC
Confidence 9876544
No 55
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.2e-18 Score=148.62 Aligned_cols=88 Identities=19% Similarity=0.434 Sum_probs=81.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|.|+.|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3567899999999999999999999999999999999999999999999999999999999998665 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
+.++.....
T Consensus 99 a~~~~~~~~ 107 (126)
T 3ex7_B 99 CFVRGPPKG 107 (126)
T ss_dssp SEESSSCCC
T ss_pred ecCCCCCCC
Confidence 998776543
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=4.4e-18 Score=135.56 Aligned_cols=81 Identities=27% Similarity=0.556 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
+.+|||+|||.++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++|++.++ +.|++++|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999665 999999999999998
Q ss_pred CC
Q 035855 188 KD 189 (456)
Q Consensus 188 k~ 189 (456)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=142.46 Aligned_cols=88 Identities=22% Similarity=0.435 Sum_probs=81.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-------CCccCCc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT-------FHDLNGK 178 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~-------~~~l~Gr 178 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.+ .+.|+++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 356789999999999999999999999999999999999999999999999999999999999866 5789999
Q ss_pred EEEEEEccCCCCCCC
Q 035855 179 QVEVKRALPKDANPG 193 (456)
Q Consensus 179 ~I~V~~a~~k~~~~~ 193 (456)
+|+|+++.++.....
T Consensus 92 ~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 92 QLKVDLAVTRDEAAS 106 (111)
T ss_dssp EEEEECCCCCCCCCC
T ss_pred EEEEEECCCCccCCC
Confidence 999999998876544
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=140.63 Aligned_cols=87 Identities=20% Similarity=0.405 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQN---TQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~---tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|++++. |+++++||||+|+++++|++||+.++ +.|++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3668999999999999999999999999999999999987 67899999999999999999999766 9999999999
Q ss_pred EEccCCCCCCC
Q 035855 183 KRALPKDANPG 193 (456)
Q Consensus 183 ~~a~~k~~~~~ 193 (456)
+++.++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99998765443
No 59
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=2.2e-19 Score=158.61 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred eEEEEEeCCHHHHHHHHHcCCcCCC-ceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHH
Q 035855 48 GFGFVVFADPSILDRVLQDKHSLDG-RTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGF 126 (456)
Q Consensus 48 GfaFVeF~d~e~A~kAl~~~~~l~G-r~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL 126 (456)
++||.+|..++.+..++.+...+.+ ...--.... ..........++|||.|||+++||+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~------------------~~~~~~~~~~~~lfV~nLp~~~te~dL 63 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGD------------------SEFTVQSTTGHCVHMRGLPYKATENDI 63 (139)
T ss_dssp -------------------------------------------------------------CCCCEECCSCCTTCCHHHH
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCC------------------cccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 6889999888877777765432222 111000000 000111235678999999999999999
Q ss_pred HHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCCCC
Q 035855 127 RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKDAN 191 (456)
Q Consensus 127 ~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~~~ 191 (456)
+++|++|| |++|+|++|++ +++||||||+|+++++|++||+++.++|+++.|+|.++.+++..
T Consensus 64 ~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 64 YNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGAS 126 (139)
T ss_dssp HHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC-
T ss_pred HHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCC
Confidence 99999999 77999999987 99999999999999999999966559999999999999887654
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=140.70 Aligned_cols=86 Identities=20% Similarity=0.444 Sum_probs=79.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+++ ++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457889999999999999999999999999999999998 78999999999999999999998666 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876544
No 61
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=3.3e-18 Score=137.81 Aligned_cols=79 Identities=39% Similarity=0.732 Sum_probs=75.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
.+.++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||++++++|++++|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4678999999999999999999999999999999999999999999999999999999999998888899999999986
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=9.4e-18 Score=143.29 Aligned_cols=85 Identities=26% Similarity=0.512 Sum_probs=78.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||+|||.++|+++|+++|++||.|++|+|+.|+ ++++++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 466899999999999999999999999999999999998 89999999999999999999998776 9999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
+++....
T Consensus 84 ~~~~~~~ 90 (116)
T 2fy1_A 84 KKPSFQS 90 (116)
T ss_dssp CCSSCSS
T ss_pred CCCCCCC
Confidence 9876543
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=143.06 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=80.5
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCcee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVT--------DVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN 176 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~--------~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~ 176 (456)
..+.++|||.|||+++|+++|+++|++||.|+ +|+|++|+.+++++|||||+|+++++|++||+.++ +.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35779999999999999999999999999999 79999999999999999999999999999998665 9999
Q ss_pred CcEEEEEEccCCCCCC
Q 035855 177 GKQVEVKRALPKDANP 192 (456)
Q Consensus 177 Gr~I~V~~a~~k~~~~ 192 (456)
+++|+|++++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999887653
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.1e-17 Score=139.42 Aligned_cols=86 Identities=17% Similarity=0.335 Sum_probs=78.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC---cEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG---KQVEV 182 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G---r~I~V 182 (456)
.+.++|||.|||.++|+++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.++ +.|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999998 68999999999999999999998766 88888 99999
Q ss_pred EEccCCCCCCC
Q 035855 183 KRALPKDANPG 193 (456)
Q Consensus 183 ~~a~~k~~~~~ 193 (456)
+++.++..+..
T Consensus 92 ~~a~~~~~~~~ 102 (105)
T 2dnh_A 92 KFADTDKESGP 102 (105)
T ss_dssp EESCSSCCCSC
T ss_pred EECccCcccCC
Confidence 99998876543
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=143.09 Aligned_cols=83 Identities=35% Similarity=0.711 Sum_probs=78.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++++.+++++|||||+|.+.++|++||++.+.|+++.|.|+++.+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 56789999999999999999999999999999999999999999999999999999999999988899999999999976
Q ss_pred hHH
Q 035855 83 REE 85 (456)
Q Consensus 83 ~~~ 85 (456)
+.+
T Consensus 93 ~~~ 95 (103)
T 2cqg_A 93 KQS 95 (103)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 66
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.4e-18 Score=144.41 Aligned_cols=86 Identities=40% Similarity=0.784 Sum_probs=79.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+.++|||+|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.+++.|++++|+|+++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 46689999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCC
Q 035855 187 PKDANP 192 (456)
Q Consensus 187 ~k~~~~ 192 (456)
+++.++
T Consensus 103 ~~~~~~ 108 (109)
T 2rs2_A 103 PRRAQP 108 (109)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887654
No 67
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=144.10 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=75.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||+++||+||+++|++||. ++|+|++|+ ++++||||||+|+++++|++||+++.+.|+++.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 356789999999999999999999999995 599999998 899999999999999999999987669999999999998
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.+++.
T Consensus 90 ~~~~~ 94 (102)
T 1wez_A 90 STAGT 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87663
No 68
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-17 Score=137.93 Aligned_cols=86 Identities=19% Similarity=0.309 Sum_probs=77.4
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.+ +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 456799999999999999999999999999999999998654 68999999999999999998655 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++..+..
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cqi_A 90 ATTPSSQKS 98 (103)
T ss_dssp CCCTTCCCC
T ss_pred CCCCccccc
Confidence 998776544
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=140.90 Aligned_cols=85 Identities=19% Similarity=0.429 Sum_probs=79.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3567899999999999999999999999999999999999999999999999999999999998655 999999999999
Q ss_pred ccCCCC
Q 035855 185 ALPKDA 190 (456)
Q Consensus 185 a~~k~~ 190 (456)
+.++..
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998764
No 70
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.5e-18 Score=137.37 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=77.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999766 899999999999
Q ss_pred ccC
Q 035855 185 ALP 187 (456)
Q Consensus 185 a~~ 187 (456)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=143.06 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=73.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C----ccCCcE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH--VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H----DLNGKQ 179 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~--V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~----~l~Gr~ 179 (456)
..-.+|||+|||+++|+|+|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+.++ . .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35578999999999999999999999995 6799999999999999999999999999999998776 3 499999
Q ss_pred EEEEEccC
Q 035855 180 VEVKRALP 187 (456)
Q Consensus 180 I~V~~a~~ 187 (456)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 72
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.74 E-value=1.6e-18 Score=165.53 Aligned_cols=81 Identities=12% Similarity=0.347 Sum_probs=75.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG--HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..++|||.||++++||++|+++|++|| .|++|+|++|+.|+++||||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999776 999999999999
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
++++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=137.74 Aligned_cols=86 Identities=26% Similarity=0.578 Sum_probs=78.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++++.+ +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 457799999999999999999999999999999999998753 89999999999999999998665 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
+.++.....
T Consensus 90 a~~~~~~~~ 98 (103)
T 2cq3_A 90 ATARVMTNS 98 (103)
T ss_dssp CCSSCCCCC
T ss_pred cccCCCCCC
Confidence 998876544
No 74
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=141.79 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|.|++++. +++||||||+|.++++|++||+ +.++|.++.|.|+++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45679999999999999999999999999999999999986 9999999999999999999999 457899999999998
Q ss_pred chhHHHhh
Q 035855 81 MSREEQQF 88 (456)
Q Consensus 81 ~~~~~~~~ 88 (456)
....+...
T Consensus 87 ~~~~~~k~ 94 (103)
T 1s79_A 87 DDYFAKKN 94 (103)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 77555443
No 75
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=139.79 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=79.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHh-cCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Cc-cCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEA-YGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HD-LNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~-fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~-l~Gr~I~V~ 183 (456)
.+.++|||.|||+++|+++|+++|++ ||.|++|+|++|+ ++++++||||+|+++++|++||+.++ +. |++++|+|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999998 89999999999999999999999776 78 999999999
Q ss_pred EccCCCCCCC
Q 035855 184 RALPKDANPG 193 (456)
Q Consensus 184 ~a~~k~~~~~ 193 (456)
++.++.....
T Consensus 86 ~a~~~~~~~~ 95 (104)
T 2dhg_A 86 VAIPKASRVK 95 (104)
T ss_dssp BCCCCCSCCC
T ss_pred EccCCCcCCC
Confidence 9988776543
No 76
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=139.92 Aligned_cols=85 Identities=19% Similarity=0.375 Sum_probs=75.4
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+.+ .++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999654 4579999999999999999997666 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++....+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4a_A 96 PRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 998765433
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=6.1e-19 Score=144.19 Aligned_cols=80 Identities=20% Similarity=0.375 Sum_probs=73.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC---CcCCCceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK---HSLDGRTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~---~~l~Gr~I~v~~a 80 (456)
+++|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.++++|++||+.+ ..|.+++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999843 3689999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.+++
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7653
No 78
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.74 E-value=7.9e-18 Score=134.71 Aligned_cols=80 Identities=25% Similarity=0.537 Sum_probs=75.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++++++|+++|++||.|++|+|++|+.++++++||||+|+++++|++|++.++ +.|++++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999997665 9999999999997
Q ss_pred c
Q 035855 186 L 186 (456)
Q Consensus 186 ~ 186 (456)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=138.13 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=78.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCcee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE----E
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVT-DVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ----V 180 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~-~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~----I 180 (456)
.+.++|||.|||+++|+++|+++|++||.|+ +|+|++|+.++++++||||+|+++++|++||+.++ +.|+++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 99999999999999999999999999999999766 9999999 9
Q ss_pred EEEEccCCCC
Q 035855 181 EVKRALPKDA 190 (456)
Q Consensus 181 ~V~~a~~k~~ 190 (456)
+|+++++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 80
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.2e-18 Score=140.16 Aligned_cols=83 Identities=12% Similarity=0.326 Sum_probs=70.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYG--HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
.+|||+|||+++|+++|+++|++|| .|++|+|++|+.+++++|||||+|+++++|++||+.++ ++|++++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999997666 89999999999999
Q ss_pred CCCCCC
Q 035855 187 PKDANP 192 (456)
Q Consensus 187 ~k~~~~ 192 (456)
++....
T Consensus 82 ~~~~~~ 87 (90)
T 3p5t_L 82 KLEHHH 87 (90)
T ss_dssp ------
T ss_pred CCcccc
Confidence 876543
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9.3e-18 Score=141.24 Aligned_cols=86 Identities=16% Similarity=0.372 Sum_probs=79.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||.++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4577899999999999999999999999999999999999999999999999999999999998655 999999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
+.++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987653
No 82
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=8.7e-18 Score=135.32 Aligned_cols=79 Identities=43% Similarity=1.016 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.++++|++||+ +.++|+++.|.|+++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4577999999999999999999999999999999999999999999999999999999999998 455799999999875
No 83
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=9e-18 Score=137.96 Aligned_cols=83 Identities=19% Similarity=0.411 Sum_probs=77.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
++++|||+|||.++++++|+++|++||.|++|+|++|+.++++++||||+|+++++|++|++.++ ..|++++|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999999999999999999999999999997666 99999999999999
Q ss_pred CCCC
Q 035855 187 PKDA 190 (456)
Q Consensus 187 ~k~~ 190 (456)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8754
No 84
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=138.91 Aligned_cols=83 Identities=40% Similarity=0.774 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999999999999999999999999999999999999999 667899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 85
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=1.1e-17 Score=142.57 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=73.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
...+|||+|||+++||++|+++|++||.|++|+|++|+. .+||||||+|+++++|++||+.++ +.|++++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999864 479999999999999999998766 99999999999998
Q ss_pred CCCCC
Q 035855 187 PKDAN 191 (456)
Q Consensus 187 ~k~~~ 191 (456)
++..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87654
No 86
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.4e-18 Score=140.18 Aligned_cols=84 Identities=39% Similarity=0.762 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
|..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|.++.|.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45788999999999999999999999999999999999999999999999999999999999997 5668999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987543
No 87
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=9.6e-18 Score=135.39 Aligned_cols=82 Identities=24% Similarity=0.459 Sum_probs=76.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
..++|||.|||.++|+++|+++|++||.|++|+|+.++.++++++||||+|+++++|++|+.++.+.|++++|+|+++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 56899999999999999999999999999999999999999999999999999999999995555999999999999987
Q ss_pred CC
Q 035855 188 KD 189 (456)
Q Consensus 188 k~ 189 (456)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 88
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=136.59 Aligned_cols=81 Identities=27% Similarity=0.515 Sum_probs=76.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999998766 899999999999
Q ss_pred cc
Q 035855 185 AL 186 (456)
Q Consensus 185 a~ 186 (456)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=7e-18 Score=146.94 Aligned_cols=85 Identities=31% Similarity=0.533 Sum_probs=79.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4577899999999999999999999999999999999999999999999999999999999999666 999999999999
Q ss_pred ccCCCC
Q 035855 185 ALPKDA 190 (456)
Q Consensus 185 a~~k~~ 190 (456)
++++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 998764
No 90
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.7e-18 Score=143.16 Aligned_cols=88 Identities=13% Similarity=0.181 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCe-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDV-LQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V-~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++||++|+++|++|+.| ..|+|++++ +++++|||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 4567999999999999999999999999999 889999998 99999999999999999999998 55689999999999
Q ss_pred cchhHHHhhhc
Q 035855 80 AMSREEQQFSA 90 (456)
Q Consensus 80 a~~~~~~~~~~ 90 (456)
+.+++......
T Consensus 91 a~~~~~~~~~~ 101 (114)
T 2cpy_A 91 VTLEDMREIEK 101 (114)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 98877665543
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=9.1e-18 Score=138.23 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=78.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
....++|||.|||+++|+++|+++|++||.|+++++++++.+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 3467899999999999999999999999999999999999999999999999999999999998777 899999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98654
No 92
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=134.14 Aligned_cols=81 Identities=23% Similarity=0.488 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|+++.|.|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 467899999999999999999999999999999999998899999999999999999999998 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 93
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.2e-17 Score=141.79 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=89.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|.|+++. ++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 457899999999999999999999999999999999754 458999999999999999998 566899999999999
Q ss_pred chhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCc
Q 035855 81 MSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH 135 (456)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~ 135 (456)
.++... .+++.+.++++|+++|++||.
T Consensus 83 ~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 765543 346677899999999999985
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=139.61 Aligned_cols=84 Identities=27% Similarity=0.613 Sum_probs=78.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||.++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++||+.++ ..|++++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999998665 999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 99875
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=138.70 Aligned_cols=84 Identities=30% Similarity=0.537 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.++|.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3567999999999999999999999999999999999999899999999999999999999997 45689999999999
Q ss_pred cchhHH
Q 035855 80 AMSREE 85 (456)
Q Consensus 80 a~~~~~ 85 (456)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 977644
No 96
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=135.68 Aligned_cols=82 Identities=29% Similarity=0.652 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
++.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 567999999999999999999999999999999999999999999999999999999999998 567899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6543
No 97
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.1e-17 Score=133.81 Aligned_cols=81 Identities=26% Similarity=0.456 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
++.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|.++.|.|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 46788999999999999999999999999999999999998899999999999999999999997 6678999999999
Q ss_pred ecc
Q 035855 79 RAM 81 (456)
Q Consensus 79 ~a~ 81 (456)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 873
No 98
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=1.4e-17 Score=141.20 Aligned_cols=83 Identities=25% Similarity=0.515 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 567999999999999999999999999999999999998899999999999999999999998 556899999999999
Q ss_pred chhHH
Q 035855 81 MSREE 85 (456)
Q Consensus 81 ~~~~~ 85 (456)
.++..
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 76544
No 99
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=135.94 Aligned_cols=82 Identities=11% Similarity=0.112 Sum_probs=75.3
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFR----QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
...++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ |+||||+|+++++|++||+.++ ++|++++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999999876 7899999999999999999666 899999999
Q ss_pred EEEccCCCCC
Q 035855 182 VKRALPKDAN 191 (456)
Q Consensus 182 V~~a~~k~~~ 191 (456)
|++++++...
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 100
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=134.33 Aligned_cols=83 Identities=17% Similarity=0.464 Sum_probs=76.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQR-PRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~-~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
..++|||.|||.++|+++|+++|++||.|++|+|+.++.+.. +++||||+|+++++|++|++.++ ..|++++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999988766 89999999999999999999655 9999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=136.97 Aligned_cols=83 Identities=27% Similarity=0.528 Sum_probs=75.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++| .+|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4577899999999999999999999976 478899999999999999999999999999998655 999999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++.+.
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9988764
No 102
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.72 E-value=2.6e-17 Score=133.79 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=76.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|+++ ++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999999974 68899999999999999999998766 8999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
+++....
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 103
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=136.13 Aligned_cols=81 Identities=22% Similarity=0.384 Sum_probs=76.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD--------VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN 176 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~ 176 (456)
..+.++|||+|||.++|+++|+++|++||.|++ |+|++|+.+++++|||||+|+++++|++||+.++ ..|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 457799999999999999999999999999999 9999999999999999999999999999998655 9999
Q ss_pred CcEEEEEEcc
Q 035855 177 GKQVEVKRAL 186 (456)
Q Consensus 177 Gr~I~V~~a~ 186 (456)
+++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 104
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=9.8e-18 Score=139.24 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCc------cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC-c
Q 035855 3 SDQGKLFIGGISW------ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG-R 73 (456)
Q Consensus 3 ~~~r~LfVgnLP~------~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G-r 73 (456)
..+++|||+|||+ ++++++|+++|++||+|++|+|++++.|+++||||||+|.++++|++||+ +...|.+ +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4478999999999 99999999999999999999999999999999999999999999999998 5678999 9
Q ss_pred eEEEEecchhHHHh
Q 035855 74 TVEAKRAMSREEQQ 87 (456)
Q Consensus 74 ~I~v~~a~~~~~~~ 87 (456)
.|.|+++.+++...
T Consensus 84 ~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 84 RLFLYTMKDVERYN 97 (100)
T ss_dssp BCEEEESHHHHHHH
T ss_pred EEEEEECchhhhhh
Confidence 99999998766543
No 105
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=137.71 Aligned_cols=84 Identities=17% Similarity=0.337 Sum_probs=77.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD-VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
.+.++|||+|||+++|++||+++|++||.|++ |+|++| .+++++|||||+|+++++|++||+++.+.|+++.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 46789999999999999999999999999998 888888 7899999999999999999999999669999999999999
Q ss_pred cCCCCC
Q 035855 186 LPKDAN 191 (456)
Q Consensus 186 ~~k~~~ 191 (456)
.+++..
T Consensus 92 ~~~~~~ 97 (104)
T 1wg5_A 92 SRAEVR 97 (104)
T ss_dssp CTTTSC
T ss_pred CHHHHH
Confidence 877643
No 106
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.5e-18 Score=140.17 Aligned_cols=84 Identities=25% Similarity=0.436 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
|..+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999998 5668999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 987643
No 107
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=1.2e-17 Score=141.72 Aligned_cols=82 Identities=22% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +..+|.++.|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999997 566899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7653
No 108
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=5e-18 Score=140.20 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC--eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC------CcCCCce
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD--VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK------HSLDGRT 74 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~--V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~------~~l~Gr~ 74 (456)
..-.||||+|||+++|||+|+++|++||. |.+|+|++|+.++++||||||+|.++++|++||+.+ +.|++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 679999999999999999999999999999999832 2589999
Q ss_pred EEEEecch
Q 035855 75 VEAKRAMS 82 (456)
Q Consensus 75 I~v~~a~~ 82 (456)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 109
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=139.47 Aligned_cols=80 Identities=14% Similarity=0.346 Sum_probs=74.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++|+. ++++|||||+|+++++|++||+++.+.|++++|+|+++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 4678999999999999999999999999999999999988 999999999999999999999966699999999999865
Q ss_pred C
Q 035855 187 P 187 (456)
Q Consensus 187 ~ 187 (456)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 110
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=138.05 Aligned_cols=82 Identities=28% Similarity=0.527 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.++|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999999899999999999999999999999 556899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7653
No 111
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=6.3e-18 Score=136.49 Aligned_cols=82 Identities=23% Similarity=0.562 Sum_probs=75.8
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
||.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999999899999999999999999999995 45689999999998
Q ss_pred cch
Q 035855 80 AMS 82 (456)
Q Consensus 80 a~~ 82 (456)
+.+
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 864
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=2.4e-17 Score=141.73 Aligned_cols=83 Identities=18% Similarity=0.424 Sum_probs=77.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
+.++|||.|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|+++++|++||+++++.|++++|+|+++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 56899999999999999999999999999999999999999999999999999999999995555999999999999986
Q ss_pred CCC
Q 035855 188 KDA 190 (456)
Q Consensus 188 k~~ 190 (456)
+..
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 113
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=141.98 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=77.4
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCce-eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHV-TDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V-~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.| +.|+|++|+ +++++|||||+|+++++|++||+++.+.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3467899999999999999999999999999 899999998 89999999999999999999999966999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+.+++
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98765
No 114
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2.3e-17 Score=140.55 Aligned_cols=81 Identities=22% Similarity=0.427 Sum_probs=75.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999998776 999999999998
Q ss_pred cc
Q 035855 185 AL 186 (456)
Q Consensus 185 a~ 186 (456)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.3e-17 Score=132.44 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=76.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
...++|||.|||+++|++||+++|++| .|++|+|+++ .+++++|||||+|+++++|++||+++...|++++|+|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 467899999999999999999999999 9999999999 78999999999999999999999944499999999999999
Q ss_pred CCCC
Q 035855 187 PKDA 190 (456)
Q Consensus 187 ~k~~ 190 (456)
+++.
T Consensus 86 ~~~~ 89 (91)
T 2dgw_A 86 SGPS 89 (91)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8754
No 116
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=8.2e-18 Score=146.53 Aligned_cols=85 Identities=26% Similarity=0.373 Sum_probs=77.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C----ccCCc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD--VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H----DLNGK 178 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~--v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~----~l~Gr 178 (456)
..+.++|||+|||+++||++|+++|++||.|+. |+|++|+.|+++||||||+|+++ +|++||+.++ + +|+++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457789999999999999999999999999976 99999999999999999999999 8888887777 7 99999
Q ss_pred EEEEEEccCCCCC
Q 035855 179 QVEVKRALPKDAN 191 (456)
Q Consensus 179 ~I~V~~a~~k~~~ 191 (456)
+|+|++++++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999886543
No 117
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=134.15 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=74.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++++++|+++|++||+|++|+|++|+. +++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 4678999999999999999999999999999999999986 8999999999999999999998655 9999999999998
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=141.66 Aligned_cols=85 Identities=22% Similarity=0.397 Sum_probs=78.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
....++|||.|||+++|+++|+++|++||.|++|+|+.|+.+++++|||||+|+++++|++||.++++.|+++.|+|+++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999955559999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
+++..
T Consensus 102 ~~~~~ 106 (114)
T 2cq4_A 102 QAEKN 106 (114)
T ss_dssp HHHHH
T ss_pred CCCcc
Confidence 87643
No 119
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=9.8e-18 Score=136.29 Aligned_cols=81 Identities=23% Similarity=0.483 Sum_probs=69.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 6 GKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
.+|||+|||+++||++|+++|++|| +|++|+|++++.++++||||||+|.+.++|++||+ +..+|+++.|.|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999997 5668999999999987
Q ss_pred hhHHH
Q 035855 82 SREEQ 86 (456)
Q Consensus 82 ~~~~~ 86 (456)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 65443
No 120
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=6.9e-18 Score=140.19 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=77.0
Q ss_pred cccEEEEcCCCC------CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC-cE
Q 035855 108 RTKKIFVGGLPP------TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG-KQ 179 (456)
Q Consensus 108 ~~~~LfV~nLp~------~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G-r~ 179 (456)
..++|||.|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|+++++|++||+.++ +.|++ ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999999999999999999999999998666 99999 99
Q ss_pred EEEEEccCCC
Q 035855 180 VEVKRALPKD 189 (456)
Q Consensus 180 I~V~~a~~k~ 189 (456)
|+|+++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998754
No 121
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=140.11 Aligned_cols=82 Identities=27% Similarity=0.490 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--c------CCcCCCce
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--D------KHSLDGRT 74 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~------~~~l~Gr~ 74 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ + .+.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999998 3 56899999
Q ss_pred EEEEecchhH
Q 035855 75 VEAKRAMSRE 84 (456)
Q Consensus 75 I~v~~a~~~~ 84 (456)
|.|+++.++.
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999987653
No 122
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=139.08 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=72.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V~ 183 (456)
.+.++|||+|||+++||+||+++|++||.|++|+|+++ ||||||+|+++++|++|++.++ .+|++++|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999999875 6799999999999999998543 68999999999
Q ss_pred EccCCCCCC
Q 035855 184 RALPKDANP 192 (456)
Q Consensus 184 ~a~~k~~~~ 192 (456)
++++++...
T Consensus 88 ~A~~~~~~~ 96 (105)
T 1sjq_A 88 FSNHKELKT 96 (105)
T ss_dssp CCSSSSCCC
T ss_pred EcCCCCCCc
Confidence 999876553
No 123
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=135.53 Aligned_cols=80 Identities=21% Similarity=0.451 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467999999999999999999999999999999999998 89999999999999999999997 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 124
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=9.6e-18 Score=138.99 Aligned_cols=99 Identities=23% Similarity=0.377 Sum_probs=80.6
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~ 83 (456)
++|||+|||+++|+++|+++|++||+|++|.|+++ +++||||+|.++++|++||+ +..+|.++.|.|+++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 67999999999999999998 567899999999999765
Q ss_pred HHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCC
Q 035855 84 EEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPP 119 (456)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~ 119 (456)
........ .........+|||++|+.
T Consensus 76 ~~~~~~~~----------~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDR----------PPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCS----------CCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCC----------CCccccCCCceecCCCCC
Confidence 42211100 011123467899999973
No 125
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=9.4e-18 Score=131.30 Aligned_cols=75 Identities=48% Similarity=0.939 Sum_probs=71.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
+|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|++++.+.|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999996669999999999875
No 126
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.3e-17 Score=136.89 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=76.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 467899999999999999999999999999999999998 48999999999999999999998665 9999999999998
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 76543
No 127
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6.6e-18 Score=140.97 Aligned_cols=83 Identities=49% Similarity=0.978 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.+.|+++.|.|+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 3567999999999999999999999999999999999999999999999999999999999999 566899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 7654
No 128
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=137.82 Aligned_cols=82 Identities=23% Similarity=0.433 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 457999999999999999999999999999999999999999999999999999999999999 456899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
No 129
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=147.07 Aligned_cols=85 Identities=24% Similarity=0.513 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~ 79 (456)
+.++|||+|||+++||++|+++|++|| +|++|+|++|+.++++||||||+|.+.++|++||+. ..+|+++.|.|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999994 5689999999999
Q ss_pred cchhHHHhh
Q 035855 80 AMSREEQQF 88 (456)
Q Consensus 80 a~~~~~~~~ 88 (456)
+.++...+.
T Consensus 134 a~~~~~~~~ 142 (156)
T 3n9u_C 134 ATRQNLSQF 142 (156)
T ss_dssp CCHHHHHHH
T ss_pred cCCCcchhh
Confidence 987665443
No 130
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=140.03 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+.++|||+|||+++||++|+++|++| .|++|+|++++. ++++|||||+|.++++|++||+ +.+.|.+|.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 899999999875 9999999999999999999997 56689999999999877
Q ss_pred hHHHhh
Q 035855 83 REEQQF 88 (456)
Q Consensus 83 ~~~~~~ 88 (456)
++....
T Consensus 93 ~~~~~~ 98 (109)
T 2dnn_A 93 RQWVAA 98 (109)
T ss_dssp HHHHHH
T ss_pred cchhhc
Confidence 654443
No 131
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=134.29 Aligned_cols=80 Identities=23% Similarity=0.548 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
..+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +.++|.++.|.|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3567999999999999999999999999999999999999999999999999999999999998 55679999999998
Q ss_pred cc
Q 035855 80 AM 81 (456)
Q Consensus 80 a~ 81 (456)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 132
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.5e-17 Score=139.30 Aligned_cols=86 Identities=19% Similarity=0.367 Sum_probs=77.8
Q ss_pred cccccEEEEcCCCCCCCHHHHH---HHHHhcCceeEEEEeecCCCC---CcceEEEEEeCCHHHHHHHHHHcC-CccCCc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFR---QYFEAYGHVTDVVIMYDQNTQ---RPRGFGFISFDTEDAVDRVLQKTF-HDLNGK 178 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~---~~F~~fG~V~~v~i~~d~~tg---~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr 178 (456)
..+.++|||.|||+++++++|+ ++|++||+|++|+|++|+.+. +++|||||+|+++++|++||+.++ +.|+++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999998754 567999999999999999999766 899999
Q ss_pred EEEEEEccCCCCC
Q 035855 179 QVEVKRALPKDAN 191 (456)
Q Consensus 179 ~I~V~~a~~k~~~ 191 (456)
+|+|+++.++...
T Consensus 92 ~l~V~~a~~k~~~ 104 (111)
T 2cpi_A 92 TLKASLGTTKYCS 104 (111)
T ss_dssp EEEEESCCCCSCS
T ss_pred EEEEEeccccccc
Confidence 9999999988743
No 133
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=137.20 Aligned_cols=84 Identities=23% Similarity=0.565 Sum_probs=78.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||.++|+++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 466899999999999999999999999999999999999999999999999999999999998766 8999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 98764
No 134
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=3.6e-17 Score=130.27 Aligned_cols=79 Identities=28% Similarity=0.512 Sum_probs=74.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
.++|||+|||+++|+++|+++|++||+|.++.|++++.++++++||||+|.++++|++||+ +...|.++.|.|+++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999899999999999999999999998 56789999999999876
Q ss_pred h
Q 035855 83 R 83 (456)
Q Consensus 83 ~ 83 (456)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=140.68 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD---VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~ 78 (456)
.+.++|||+|||+++||++|+++|++|++ |+.|+|++++. +++||||||+|.++++|++||+ +.++|.++.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45789999999999999999999999999 89999999986 9999999999999999999998 5568999999999
Q ss_pred ecchhHHHhhhcc
Q 035855 79 RAMSREEQQFSAR 91 (456)
Q Consensus 79 ~a~~~~~~~~~~~ 91 (456)
++..++.+.....
T Consensus 94 ~a~~~~~~~~~~~ 106 (118)
T 2db1_A 94 KSHRTEMDWVLKH 106 (118)
T ss_dssp EECHHHHHHHHHT
T ss_pred ECCHHHHHHHHHH
Confidence 9987765554433
No 136
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1.3e-17 Score=136.38 Aligned_cols=81 Identities=16% Similarity=0.281 Sum_probs=74.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|++||+++|++||.|+++++++++.++++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999998655 9999999999987
Q ss_pred cC
Q 035855 186 LP 187 (456)
Q Consensus 186 ~~ 187 (456)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 137
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-17 Score=138.45 Aligned_cols=88 Identities=26% Similarity=0.581 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 3456899999999999999999999999999999999999899999999999999999999998 55689999999999
Q ss_pred cchhHHHhhh
Q 035855 80 AMSREEQQFS 89 (456)
Q Consensus 80 a~~~~~~~~~ 89 (456)
+.++......
T Consensus 85 a~~~~~~~~~ 94 (104)
T 1p1t_A 85 AASEKNKEEL 94 (104)
T ss_dssp TTCTTHHHHH
T ss_pred CCCccchhhh
Confidence 9877665443
No 138
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=139.32 Aligned_cols=82 Identities=35% Similarity=0.741 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.+ .+|.++.|.|+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 456799999999999999999999999999999999999999999999999999999999999943 3799999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.+.
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
No 139
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=1.3e-17 Score=140.79 Aligned_cols=83 Identities=49% Similarity=0.904 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEec
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRA 80 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a 80 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.. +.|+++.|.|+++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 467799999999999999999999999999999999999999999999999999999999999943 6899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 140
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=5.7e-17 Score=135.58 Aligned_cols=80 Identities=15% Similarity=0.356 Sum_probs=75.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567999999999999999999999999999999999998 89999999999999999999999655 999999999999
Q ss_pred cc
Q 035855 185 AL 186 (456)
Q Consensus 185 a~ 186 (456)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 141
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.4e-17 Score=136.08 Aligned_cols=81 Identities=20% Similarity=0.425 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.+.++|++||+ +.+.|.++.|.|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456899999999999999999999999999999999999999999999999999999999998 567899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 142
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=135.71 Aligned_cols=82 Identities=30% Similarity=0.549 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQT-VVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v-~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
++.++|||+|||+++|+++|+++|++||+|++| +|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 568999999999999999999999999999999 999998899999999999999999999999 45679999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 87643
No 143
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=147.13 Aligned_cols=81 Identities=21% Similarity=0.390 Sum_probs=76.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC--ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG--HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG--~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
+.++|||+|||+++||++|+++|++|| .|++|+|++|+.+++++|||||+|+++++|++||+.++ ++|++++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999977 999999999999
Q ss_pred ccCC
Q 035855 185 ALPK 188 (456)
Q Consensus 185 a~~k 188 (456)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 144
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=133.66 Aligned_cols=79 Identities=29% Similarity=0.471 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|.+++|.|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 456899999999999999999999999999999999999999999999999999999999999 556899999999987
Q ss_pred c
Q 035855 81 M 81 (456)
Q Consensus 81 ~ 81 (456)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 145
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=130.48 Aligned_cols=79 Identities=27% Similarity=0.552 Sum_probs=72.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|+ ++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 467999999999999999999999999999999997 5699999999999999997666 8999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
+++.....
T Consensus 78 ~~~~~~~~ 85 (90)
T 2dnq_A 78 KNKSKASS 85 (90)
T ss_dssp SCCCCCCS
T ss_pred CCCCCCCC
Confidence 98876543
No 146
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.9e-17 Score=136.47 Aligned_cols=85 Identities=22% Similarity=0.413 Sum_probs=78.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VTDVVIM-YDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~i~-~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~ 181 (456)
.+.++|||.|||+++|+++|+++|++||. |++|+|+ .|+.+++++|||||+|+++++|++||+.++ +.|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999998 888889999999999999999999999763 789999999
Q ss_pred EEEccCCCCC
Q 035855 182 VKRALPKDAN 191 (456)
Q Consensus 182 V~~a~~k~~~ 191 (456)
|+++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999987653
No 147
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=142.45 Aligned_cols=88 Identities=26% Similarity=0.370 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCe----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDV----LQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEA 77 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V----~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v 77 (456)
.+.++|||+|||+++||++|+++|++|++| ..|+|++++ ++++||||||+|.++++|++||+ +.+.|.+|.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 467899999999999999999999999986 689999885 89999999999999999999998 566899999999
Q ss_pred EecchhHHHhhhcc
Q 035855 78 KRAMSREEQQFSAR 91 (456)
Q Consensus 78 ~~a~~~~~~~~~~~ 91 (456)
..+.+++.+.....
T Consensus 100 ~~a~~~e~~~~~~~ 113 (123)
T 2dha_A 100 FRSTAAEVQQVLNR 113 (123)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EECCHHHHHHHHHh
Confidence 99987766655444
No 148
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.2e-17 Score=138.96 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=76.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|+.|.+..+..+++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3467899999999999999999999999999655444444478899999999999999999998766 999999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++..+..
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpx_A 102 GKNKKQRSS 110 (115)
T ss_dssp CCCCSCCCC
T ss_pred ccCCCCCCC
Confidence 998876544
No 149
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=138.53 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++||++|+++|++|+.| +|+|++++ ++++||||||+|+++++|++||+ +.++|.++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 457899999999999999999999999955 99999998 89999999999999999999997 5668999999998875
Q ss_pred h
Q 035855 82 S 82 (456)
Q Consensus 82 ~ 82 (456)
+
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=130.94 Aligned_cols=77 Identities=40% Similarity=0.799 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|++.+++.|++++|+|++|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEecC
Confidence 46999999999999999999999999999999999999999999999999999999999999899999999999873
No 151
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=2.9e-17 Score=137.20 Aligned_cols=83 Identities=25% Similarity=0.472 Sum_probs=75.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcC---CCceEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSL---DGRTVE 76 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l---~Gr~I~ 76 (456)
+.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+. ...+ .++.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999999999999999999999999999999984 4455 789999
Q ss_pred EEecchhH
Q 035855 77 AKRAMSRE 84 (456)
Q Consensus 77 v~~a~~~~ 84 (456)
|+++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99987643
No 152
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=133.75 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=71.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC-----cEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG-----KQV 180 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G-----r~I 180 (456)
...++|||.|||+++|++||+++|++||+|++|+|++| +||||+|+++++|++||+.++ ++|++ ++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999876 699999999999999999777 88999 999
Q ss_pred EEEEccCCCCC
Q 035855 181 EVKRALPKDAN 191 (456)
Q Consensus 181 ~V~~a~~k~~~ 191 (456)
+|+++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987654
No 153
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=137.49 Aligned_cols=81 Identities=32% Similarity=0.467 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 457999999999999999999999999999999999999999999999999999999999998 567899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
...
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 154
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=138.96 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
....+|||+|||+++|++||+++|++| .|++|+|++|++ ++++|||||+|+++++|++||+++.++|++|.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 456899999999999999999999999 899999999986 899999999999999999999776699999999999987
Q ss_pred CCC
Q 035855 187 PKD 189 (456)
Q Consensus 187 ~k~ 189 (456)
+++
T Consensus 92 ~~~ 94 (109)
T 2dnn_A 92 ERQ 94 (109)
T ss_dssp HHH
T ss_pred ccc
Confidence 653
No 155
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=135.42 Aligned_cols=81 Identities=28% Similarity=0.537 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCC---CCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKT---TGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEA 77 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~---tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v 77 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++. ++++++||||+|.++++|++||+ +.+.|.++.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 5679999999999999999999999999999999999887 66899999999999999999999 556899999999
Q ss_pred Eecchh
Q 035855 78 KRAMSR 83 (456)
Q Consensus 78 ~~a~~~ 83 (456)
+++.++
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998654
No 156
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=133.55 Aligned_cols=82 Identities=16% Similarity=0.389 Sum_probs=73.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++|+.| +|+.+ .++++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4577999999999999999999999999977 56666 678899999999999999999999666 899999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 157
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=5e-17 Score=135.46 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=74.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC---ceEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG---RTVEA 77 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G---r~I~v 77 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++||+ +...|.+ +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457999999999999999999999999999999999998 79999999999999999999998 4557787 99999
Q ss_pred EecchhHH
Q 035855 78 KRAMSREE 85 (456)
Q Consensus 78 ~~a~~~~~ 85 (456)
+++.++.+
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99976543
No 158
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=138.22 Aligned_cols=83 Identities=23% Similarity=0.459 Sum_probs=74.3
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQ-NTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~-~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
....++|||+|||.++|+++|+++|++|| |++|+|++++ .+++++|||||+|+++++|++||++++..|++++|+|++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 35679999999999999999999999999 9999999998 689999999999999999999995555999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98865
No 159
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.3e-17 Score=130.29 Aligned_cols=75 Identities=39% Similarity=0.802 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
+|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|+++++|++|++++++.|++++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998779999999999875
No 160
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=4.9e-17 Score=133.54 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecch
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~ 82 (456)
+++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +...|.++.|.|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6899999999999999999999999999999999999899999999999999999999998 56689999999999977
Q ss_pred hHHHh
Q 035855 83 REEQQ 87 (456)
Q Consensus 83 ~~~~~ 87 (456)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 65443
No 161
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4e-17 Score=136.44 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQ-TVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~-v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++||++|+++|++|++|++ |+|+++ .+++++|||||+|.++++|++||+ +.+.|.++.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45799999999999999999999999999998 778777 689999999999999999999998 566899999999887
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 162
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-17 Score=136.59 Aligned_cols=84 Identities=24% Similarity=0.337 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHHHcC----CcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD-VLQTVVM-REKTTGRPRGFGFVVFADPSILDRVLQDK----HSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~-~d~~tg~srGfaFVeF~d~e~A~kAl~~~----~~l~Gr~I~ 76 (456)
.+.++|||+|||+++|+++|+++|++||+ |++|.|+ .++.++++++||||+|.++++|++||+.+ ..|+++.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 56799999999999999999999999998 9999998 78888899999999999999999999943 579999999
Q ss_pred EEecchhHHH
Q 035855 77 AKRAMSREEQ 86 (456)
Q Consensus 77 v~~a~~~~~~ 86 (456)
|+++.++.+.
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999876543
No 163
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=135.69 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=76.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeec-CCCCCcceEEEEEeCCHHHHHHHHHc---CCcCCCceEEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMRE-KTTGRPRGFGFVVFADPSILDRVLQD---KHSLDGRTVEA 77 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d-~~tg~srGfaFVeF~d~e~A~kAl~~---~~~l~Gr~I~v 77 (456)
+.+.++|||+|||+++|+++|+++|++||+|+.|+|+++ +.++++++||||+|.++++|++||+. .+.|.++.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 356799999999999999999999999999999999999 78999999999999999999999984 56899999999
Q ss_pred EecchhH
Q 035855 78 KRAMSRE 84 (456)
Q Consensus 78 ~~a~~~~ 84 (456)
+++.++.
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9997653
No 164
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=2.3e-16 Score=131.34 Aligned_cols=80 Identities=28% Similarity=0.501 Sum_probs=71.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++ +||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34678999999999999999999999999999999973 499999999999999999665 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++.....
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 998776544
No 165
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=3.1e-17 Score=128.30 Aligned_cols=74 Identities=42% Similarity=0.798 Sum_probs=70.2
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
+|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+ +.+.|++++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 69999999999999999999999999999999999899999999999999999999998 567899999999875
No 166
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2e-17 Score=137.12 Aligned_cols=84 Identities=18% Similarity=0.392 Sum_probs=76.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+.++|||+|||+++|+++|+++|++||.|+. .++.++.+++++|||||+|+++++|++||+++.+.|++++|+|++++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999999988 77888888999999999999999999999955599999999999999
Q ss_pred CCCCC
Q 035855 187 PKDAN 191 (456)
Q Consensus 187 ~k~~~ 191 (456)
++...
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 167
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=132.55 Aligned_cols=79 Identities=25% Similarity=0.544 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. +++++||||+|.++++|++||+ +.++|+++.|.|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 35679999999999999999999999999999999999885 8999999999999999999998 56689999999998
Q ss_pred cc
Q 035855 80 AM 81 (456)
Q Consensus 80 a~ 81 (456)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 168
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=133.58 Aligned_cols=80 Identities=25% Similarity=0.453 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCee-EEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCce----E
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVL-QTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRT----V 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~-~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~----I 75 (456)
...++|||+|||+++||++|+++|++||+|+ +|+|++++.++++++||||+|.++++|++||+ +...|.++. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4679999999999999999999999999999 99999999999999999999999999999999 455788888 8
Q ss_pred EEEecch
Q 035855 76 EAKRAMS 82 (456)
Q Consensus 76 ~v~~a~~ 82 (456)
.|.++.+
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 8888754
No 169
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=4.9e-17 Score=135.30 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++|+++|+++|++|+ |++|+|++++.+++++|||||+|.++++|++||+ +..+|.++.|.|+++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4578999999999999999999999996 9999999999999999999999999999999995 4557999999999987
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
++
T Consensus 92 ~~ 93 (103)
T 2dng_A 92 GR 93 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=136.58 Aligned_cols=81 Identities=26% Similarity=0.624 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 567899999999999999999999999999999999999899999999999999999999998 667899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 171
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=140.42 Aligned_cols=84 Identities=15% Similarity=0.336 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++||. +.+.|.++.|.|+++.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 35899999999999999999999999999999999999999999999999999999999995 45689999999999987
Q ss_pred hHHHh
Q 035855 83 REEQQ 87 (456)
Q Consensus 83 ~~~~~ 87 (456)
+....
T Consensus 104 ~~~~~ 108 (114)
T 2cq4_A 104 EKNRL 108 (114)
T ss_dssp HHHHH
T ss_pred CccCC
Confidence 66543
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=5.4e-17 Score=142.74 Aligned_cols=85 Identities=19% Similarity=0.311 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD---VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~ 78 (456)
.+.++|||+|||+++||++|+++|++|++ |++|+|++++. +++||||||+|.++++|++||+ +.++|.++.|+|+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45789999999999999999999999999 89999999986 9999999999999999999999 4558999999999
Q ss_pred ecchhHHHhh
Q 035855 79 RAMSREEQQF 88 (456)
Q Consensus 79 ~a~~~~~~~~ 88 (456)
++..++.+..
T Consensus 121 ~a~~~e~~~~ 130 (136)
T 2hgl_A 121 KSHRTEMDWV 130 (136)
T ss_dssp ECCHHHHHHH
T ss_pred ECChHHHHHH
Confidence 9987665543
No 173
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=142.52 Aligned_cols=85 Identities=15% Similarity=0.323 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++||++|+++|++||+|++++++.++.+++++|||||+|.++++|++||+ +.+.|.++.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 456899999999999999999999999999997788777899999999999999999999999 5568999999999998
Q ss_pred hhHHHh
Q 035855 82 SREEQQ 87 (456)
Q Consensus 82 ~~~~~~ 87 (456)
+++..+
T Consensus 103 ~~~~~~ 108 (124)
T 1wel_A 103 KKGMLE 108 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776533
No 174
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=2.3e-16 Score=135.72 Aligned_cols=86 Identities=14% Similarity=0.309 Sum_probs=79.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4577899999999999999999999999999999999998 89999999999999999999999665 899999999999
Q ss_pred ccCCCCCC
Q 035855 185 ALPKDANP 192 (456)
Q Consensus 185 a~~k~~~~ 192 (456)
+.++....
T Consensus 111 a~~~~~~~ 118 (124)
T 2kt5_A 111 VASQIDLE 118 (124)
T ss_dssp ECCTTCCC
T ss_pred eCCCCCCC
Confidence 98876543
No 175
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=138.52 Aligned_cols=80 Identities=20% Similarity=0.348 Sum_probs=72.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V~ 183 (456)
.+.++|||+|||+++||+||+++|++||.|++|+|+++ ||||||+|+++++|++|++.++ .+|++++|+|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 46789999999999999999999999999999999876 6799999999999999998764 58999999999
Q ss_pred EccCCCCCC
Q 035855 184 RALPKDANP 192 (456)
Q Consensus 184 ~a~~k~~~~ 192 (456)
++++++...
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 999887654
No 176
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.3e-17 Score=135.50 Aligned_cols=80 Identities=28% Similarity=0.508 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ ++++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46799999999999999999999999999999999998 88999999999999999999998 566899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 7654
No 177
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=132.31 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=72.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc---CCccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT---FHDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~---~~~l~Gr~I~V~ 183 (456)
.++++|||+|||+++||++|+++|++||.|++|+|+++ ||||||+|+++++|++|++.+ ..+|++++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 47789999999999999999999999999999999865 679999999999999999864 368999999999
Q ss_pred EccCCCCCC
Q 035855 184 RALPKDANP 192 (456)
Q Consensus 184 ~a~~k~~~~ 192 (456)
+++++....
T Consensus 87 ~a~~~~~~~ 95 (101)
T 2cq1_A 87 YSNHKELKT 95 (101)
T ss_dssp ECSCSSCCC
T ss_pred EcCcccCcC
Confidence 999877654
No 178
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=134.12 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=71.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V~ 183 (456)
.++++|||+|||+++||++|+++|++||.|++|+|+++ |+||||+|+++++|++|++.++ .+|++++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46799999999999999999999999999999999864 6799999999999999998653 56999999999
Q ss_pred EccCCCCCC
Q 035855 184 RALPKDANP 192 (456)
Q Consensus 184 ~a~~k~~~~ 192 (456)
+++++....
T Consensus 87 ~a~~~~~~~ 95 (104)
T 1wex_A 87 YSTSKRITR 95 (104)
T ss_dssp ECSSSSCCC
T ss_pred EccCccccC
Confidence 999877654
No 179
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=128.67 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=72.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+++ ||||+|+++++|++|++.++ +.|++++|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 346799999999999999999999999999999999844 99999999999999998666 899999999999
Q ss_pred ccCCCCCCC
Q 035855 185 ALPKDANPG 193 (456)
Q Consensus 185 a~~k~~~~~ 193 (456)
++++.....
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 998776544
No 180
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.68 E-value=3.8e-17 Score=139.91 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=75.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH---VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~---V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
.+.++|||+|||+++|++||+++|++||. |+.|+|++|++ ++++|||||+|+++++|++||+++.++|+++.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45689999999999999999999999999 89999999987 999999999999999999999966699999999999
Q ss_pred EccCCC
Q 035855 184 RALPKD 189 (456)
Q Consensus 184 ~a~~k~ 189 (456)
++.+++
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 181
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=131.55 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQ--------TVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG 72 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G 72 (456)
...++|||+|||+++|+++|+++|++||.|++ |+|++++.+++++|||||+|.+.++|++||+ +..+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46799999999999999999999999999999 9999999999999999999999999999998 5678999
Q ss_pred ceEEEEecc
Q 035855 73 RTVEAKRAM 81 (456)
Q Consensus 73 r~I~v~~a~ 81 (456)
+.|.|+++.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999873
No 182
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=136.28 Aligned_cols=81 Identities=30% Similarity=0.662 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456999999999999999999999999999999999998 99999999999999999999998 556899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 183
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=138.61 Aligned_cols=80 Identities=51% Similarity=0.898 Sum_probs=74.9
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchh
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~ 83 (456)
.++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +.+.|+++.|.|+++.++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCC
Confidence 4899999999999999999999999999999999999999999999999999999999998 456899999999998765
Q ss_pred H
Q 035855 84 E 84 (456)
Q Consensus 84 ~ 84 (456)
.
T Consensus 107 ~ 107 (116)
T 1x4b_A 107 E 107 (116)
T ss_dssp C
T ss_pred c
Confidence 4
No 184
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.3e-18 Score=146.59 Aligned_cols=86 Identities=21% Similarity=0.353 Sum_probs=79.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD--------VVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG 177 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~--------v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G 177 (456)
.+.++|||+|||.++|+++|+++|++||.|+. |+|+.|+.+++++|||||+|+++++|++||+.++ ..|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 36789999999999999999999999999999 9999999999999999999999999999999666 99999
Q ss_pred cEEEEEEccCCCCCC
Q 035855 178 KQVEVKRALPKDANP 192 (456)
Q Consensus 178 r~I~V~~a~~k~~~~ 192 (456)
++|+|++++++....
T Consensus 85 ~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 85 NPIKVSFATRRADFN 99 (116)
Confidence 999999999887653
No 185
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=2.8e-17 Score=134.37 Aligned_cols=79 Identities=14% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
+..++|||+|||+++|+++|+++|++|++|++++++.++.++++++||||+|.++++|++||+ +.+.|.++.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 346899999999999999999999999999999999999999999999999999999999998 567899999999887
Q ss_pred c
Q 035855 81 M 81 (456)
Q Consensus 81 ~ 81 (456)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 186
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.1e-17 Score=135.42 Aligned_cols=81 Identities=25% Similarity=0.477 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++|| |++|.|++++.+ +++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999999887 9999999999999999999995 456799999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wi8_A 92 DQAQ 95 (104)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 187
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=4e-17 Score=139.10 Aligned_cols=79 Identities=22% Similarity=0.413 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +..+|+++.|.|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 456999999999999999999999999999999999999899999999999999999999998 456799999999886
Q ss_pred c
Q 035855 81 M 81 (456)
Q Consensus 81 ~ 81 (456)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 188
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-17 Score=128.55 Aligned_cols=75 Identities=52% Similarity=0.961 Sum_probs=70.9
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC-CcCCCceEEEEec
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK-HSLDGRTVEAKRA 80 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~-~~l~Gr~I~v~~a 80 (456)
++|||+|||+++|+++|+++|++||+|.+|.|++++.+++++|||||+|.++++|++||+.. +.|++++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 68999999999999999999999999999999999989999999999999999999999932 7899999999886
No 189
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.68 E-value=8.9e-17 Score=140.89 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +..+|.++.|.|+++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999 455799999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
No 190
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.5e-17 Score=137.15 Aligned_cols=82 Identities=23% Similarity=0.468 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCee--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVL--------QTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG 72 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~--------~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G 72 (456)
.+.++|||+|||+++|+++|+++|++||+|+ .|+|+.++.++++++||||+|.++++|++||+ +.++|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4679999999999999999999999999999 69999998899999999999999999999998 6678999
Q ss_pred ceEEEEecchhH
Q 035855 73 RTVEAKRAMSRE 84 (456)
Q Consensus 73 r~I~v~~a~~~~ 84 (456)
+.|.|+++.++.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999987654
No 191
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=2.5e-17 Score=133.43 Aligned_cols=81 Identities=32% Similarity=0.675 Sum_probs=71.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
++|||+|||.++++++|+++|++||+|++|+|++|+.+++++|||||+|++++ |++|++.++ ..|++++|+|+++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999988 888888766 8999999999999887
Q ss_pred CCC
Q 035855 189 DAN 191 (456)
Q Consensus 189 ~~~ 191 (456)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 644
No 192
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-17 Score=134.46 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++|++|++++++.++.++++++||||+|.++++|++||+. ..+|.++.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4568999999999999999999999999999999999998999999999999999999999984 45899999999987
Q ss_pred ch
Q 035855 81 MS 82 (456)
Q Consensus 81 ~~ 82 (456)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 193
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=6.4e-17 Score=140.86 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +..+|++++|.|+++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999999999999999999999999999999 567899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 654
No 194
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=134.83 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+ +.++|+++.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999988 69999999999999999999998 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 653
No 195
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=129.55 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=71.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccC--CcEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLN--GKQVEV 182 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~--Gr~I~V 182 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|+++ ++||||+|+++++|++||+.++ +.|+ +++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 356789999999999999999999999999999999754 6799999999999999998666 8999 999999
Q ss_pred EEccCCCC
Q 035855 183 KRALPKDA 190 (456)
Q Consensus 183 ~~a~~k~~ 190 (456)
++++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998764
No 196
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=5.5e-17 Score=134.98 Aligned_cols=81 Identities=26% Similarity=0.473 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCc-CCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQ-YGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHS-LDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~-~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~-l~Gr~I~v~ 78 (456)
...++|||+|||+++|+++|+++|++ ||+|++|+|++++ ++++++||||+|.+.++|++||+. ... |.++.|.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45799999999999999999999999 9999999999998 999999999999999999999994 446 999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++.++.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 986553
No 197
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.1e-16 Score=143.29 Aligned_cols=81 Identities=23% Similarity=0.426 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++||++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +.++|+++.|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457999999999999999999999999999999999999999999999999999999999999 566899999999999
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.+.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
No 198
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-17 Score=142.16 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=76.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||.|||+++|++||+++|++||.|+++.++.+..+++++|||||+|+++++|++||+++.+.|+++.|+|.++
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 34668999999999999999999999999999988888888999999999999999999999995559999999999998
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
.+++
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8654
No 199
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=130.12 Aligned_cols=79 Identities=19% Similarity=0.409 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++|+++|+++|++| .|++|+|+++ .+++++|||||+|.++++|++||+ +...|.++.|.|+++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 567999999999999999999999999 9999999999 689999999999999999999999 4447999999999986
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-17 Score=132.81 Aligned_cols=80 Identities=18% Similarity=0.453 Sum_probs=73.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++|++.++ +.|+++.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 367899999999999999999999999999999999999999999999999999999999998666 8899998877654
Q ss_pred c
Q 035855 186 L 186 (456)
Q Consensus 186 ~ 186 (456)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 201
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.1e-16 Score=137.99 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+ +..+|.++.|.|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 457899999999999999999999999999999999999899999999999999999999997 667899999999999
Q ss_pred chhHH
Q 035855 81 MSREE 85 (456)
Q Consensus 81 ~~~~~ 85 (456)
.++..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 76543
No 202
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=137.68 Aligned_cols=81 Identities=25% Similarity=0.544 Sum_probs=75.6
Q ss_pred CcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEE
Q 035855 105 GTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVK 183 (456)
Q Consensus 105 ~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~ 183 (456)
...+.++|||+|||.++|+++|+++|++||.|++|+|++|+.++++++||||+|+++++|++||+.++ +.|++++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999998777 89999999998
Q ss_pred Ec
Q 035855 184 RA 185 (456)
Q Consensus 184 ~a 185 (456)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 203
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-17 Score=137.30 Aligned_cols=77 Identities=10% Similarity=0.208 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEA 77 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v 77 (456)
+.+.++|||+|||+++||++|+++|++||+|++|+|+++ ||||||+|+++++|++||+. ..+|.+++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356799999999999999999999999999999999975 58999999999999999983 25799999999
Q ss_pred EecchhH
Q 035855 78 KRAMSRE 84 (456)
Q Consensus 78 ~~a~~~~ 84 (456)
.++.++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9987543
No 204
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=131.88 Aligned_cols=81 Identities=27% Similarity=0.567 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. .+++||||+|.++++|++||+ +.+.|+++.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45679999999999999999999999999999999999864 389999999999999999998 56689999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 87653
No 205
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=132.32 Aligned_cols=81 Identities=22% Similarity=0.363 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++.+ +++||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 356799999999999999999999999999999999998644 68999999999999999998 55689999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 97644
No 206
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=9.7e-17 Score=134.96 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 456899999999999999999999999999999999999899999999999999999999998 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 764
No 207
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=1.1e-16 Score=152.78 Aligned_cols=85 Identities=24% Similarity=0.471 Sum_probs=77.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCC--CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYG--DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G--~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.++|||+|||++|||++|+++|++|| +|++|+|++++.++++||||||+|.+.++|++||+ +.++|.++.|.|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999 45689999999999
Q ss_pred cchhHHHhh
Q 035855 80 AMSREEQQF 88 (456)
Q Consensus 80 a~~~~~~~~ 88 (456)
+.+......
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 987765544
No 208
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=3.7e-17 Score=143.77 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=75.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH---VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~---V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
.+.++|||+|||+++||+||+++|++||. |++|+|++|++ +++||||||+|+++++|++||+++.++|+++.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 35689999999999999999999999999 89999999988 999999999999999999999955599999999999
Q ss_pred EccCCC
Q 035855 184 RALPKD 189 (456)
Q Consensus 184 ~a~~k~ 189 (456)
++.+++
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987654
No 209
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=5.7e-17 Score=136.18 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD---VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~---V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~ 78 (456)
.+.++|||+|||+++|+++|+++|++|+. |+.|+|++++. ++++|||||+|.+.++|++||+ +.+.|.++.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999988 89999999986 9999999999999999999999 5567999999999
Q ss_pred ecchhHHHhhh
Q 035855 79 RAMSREEQQFS 89 (456)
Q Consensus 79 ~a~~~~~~~~~ 89 (456)
++.+++.....
T Consensus 88 ~a~~~~~~~~~ 98 (107)
T 2lmi_A 88 EINNEDVDALM 98 (107)
T ss_dssp ECCHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99877655443
No 210
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=3.5e-17 Score=127.89 Aligned_cols=74 Identities=32% Similarity=0.646 Sum_probs=70.0
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 7 KLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
||||+|||+++|+++|+++|++||+|++|.|++++.++++++||||+|.++++|++||+ +.+.|.++.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999899999999999999999999999 567899999999875
No 211
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=134.73 Aligned_cols=82 Identities=27% Similarity=0.617 Sum_probs=74.7
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||.++|+++|+++|++||.|++|+|++|+. .++|||||+|+++++|++|++.++ +.|++++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45778999999999999999999999999999999998864 489999999999999999998655 899999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98764
No 212
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=132.97 Aligned_cols=82 Identities=17% Similarity=0.387 Sum_probs=75.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc--------C
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL--------N 176 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l--------~ 176 (456)
..+.++|||.|||+++|+++|+++|++||.|++|+|++|+ +++++|||||+|+++++|++||+.++ +.| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3467899999999999999999999999999999999998 89999999999999999999998666 788 5
Q ss_pred CcEEEEEEccCC
Q 035855 177 GKQVEVKRALPK 188 (456)
Q Consensus 177 Gr~I~V~~a~~k 188 (456)
+++|.|+++.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999865
No 213
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=1.9e-16 Score=132.34 Aligned_cols=78 Identities=22% Similarity=0.449 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|+.++ ++++++||||+|.++++|++||+ +..+|.++.|.|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457899999999999999999999999999999999998 99999999999999999999999 667899999999987
Q ss_pred c
Q 035855 81 M 81 (456)
Q Consensus 81 ~ 81 (456)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 214
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-17 Score=141.30 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCce----eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHV----TDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V----~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
+..+|||+|||+++|++||+++|++|+.| ++|+|++|+ +++++|||||+|+++++|++||+++.+.|+++.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45899999999999999999999999875 689999984 7999999999999999999999987699999999999
Q ss_pred EccCCC
Q 035855 184 RALPKD 189 (456)
Q Consensus 184 ~a~~k~ 189 (456)
.+.+++
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 887553
No 215
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=132.64 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=70.4
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEEE
Q 035855 107 IRTKKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVEV 182 (456)
Q Consensus 107 ~~~~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~V 182 (456)
.+.++|||+|||+ ++||+||+++|++||.|++|+|+++ |+||||+|+++++|++||+.++ .+|++++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4679999999999 9999999999999999999999876 3699999999999999998654 4699999999
Q ss_pred EEccCCCCC
Q 035855 183 KRALPKDAN 191 (456)
Q Consensus 183 ~~a~~k~~~ 191 (456)
++++.+..-
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999975543
No 216
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=3.3e-17 Score=142.22 Aligned_cols=81 Identities=17% Similarity=0.356 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCcee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVT--DVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~--~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~ 184 (456)
.+.++|||+|||+++||+||+++|++| .|+ +|+|++|++ +++||||||+|+++++|++||++++++|+++.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 456889999999999999999999999 677 899999988 9999999999999999999999888999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-17 Score=130.60 Aligned_cols=78 Identities=24% Similarity=0.489 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
++.++|||+|||+++|+++|+++|++||+|++|+|+.++.++++++||||+|.++++|++||+ +...|.++.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 568999999999999999999999999999999999999899999999999999999999998 455788888876554
No 218
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=8.8e-17 Score=133.38 Aligned_cols=84 Identities=30% Similarity=0.629 Sum_probs=76.8
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||+|||+++|+++|+++|++||.|++|+|++|+ +++++|||||+|+++++|++||+ +.++|++++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 3567899999999999999999999999999999999998 89999999999999999999999 668999999999999
Q ss_pred cCCCCC
Q 035855 186 LPKDAN 191 (456)
Q Consensus 186 ~~k~~~ 191 (456)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 877543
No 219
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=3.8e-16 Score=131.52 Aligned_cols=77 Identities=17% Similarity=0.428 Sum_probs=69.1
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPT-LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
...++|||.|||++ +|+++|+++|++||.|++|+| +++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999 999999999999999999999 46799999999999999997665 999999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++...
T Consensus 97 a~~~~~~ 103 (110)
T 1wf1_A 97 AGEPKPD 103 (110)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 9865544
No 220
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=6e-17 Score=140.59 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCee--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVL--QTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~--~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~ 79 (456)
.+.++|||+|||+++||++|+++|++| .|+ +|+|++++. +++||||||+|+++++|++||+ +..+|.+|.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 356899999999999999999999999 677 899999886 9999999999999999999998 45789999999998
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86554
No 221
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=2.1e-16 Score=128.34 Aligned_cols=80 Identities=23% Similarity=0.504 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|+.|+|+++ ++++++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999999984 78999999999999999999998 56689999999998
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.+.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 8654
No 222
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=129.54 Aligned_cols=81 Identities=35% Similarity=0.608 Sum_probs=72.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 6799999999999999997766 8999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
+++.....
T Consensus 87 ~~~~~~~~ 94 (99)
T 2cpj_A 87 CHSASLTS 94 (99)
T ss_dssp SCCSCCCC
T ss_pred CCCCCCCC
Confidence 98776543
No 223
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=131.12 Aligned_cols=81 Identities=17% Similarity=0.448 Sum_probs=73.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
...++|||.|||.++|+++|+++|++||.|++|+|+++ ++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35689999999999999999999999999999999876 6799999999999999997666 9999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
+++.....
T Consensus 97 ~~~~~~~~ 104 (109)
T 1x4g_A 97 KESPDMTS 104 (109)
T ss_dssp CCCCSSCC
T ss_pred CCCCCCCC
Confidence 98776543
No 224
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.6e-16 Score=127.11 Aligned_cols=79 Identities=23% Similarity=0.384 Sum_probs=70.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhc--CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAY--GHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~f--G~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
..+.++|||.|||+++|+++|+++|++| +.|++|+++ ++||||+|+++++|++||+.++ +.|++++|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3467899999999999999999999999 999999875 4599999999999999999665 8999999999
Q ss_pred EEccCCCCCC
Q 035855 183 KRALPKDANP 192 (456)
Q Consensus 183 ~~a~~k~~~~ 192 (456)
++++++....
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2cpd_A 84 TLAKPVDKDS 93 (99)
T ss_dssp ECCCCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876543
No 225
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=126.07 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=70.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||+++|+++|+++|++||.|++|+|+++ ||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 46789999999999999999999999999999999844 89999999999999998666 9999999999999
Q ss_pred cCCCCCC
Q 035855 186 LPKDANP 192 (456)
Q Consensus 186 ~~k~~~~ 192 (456)
.++....
T Consensus 79 ~~~~~~~ 85 (90)
T 2dnp_A 79 TKGQKKS 85 (90)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 226
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-17 Score=141.87 Aligned_cols=81 Identities=17% Similarity=0.349 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeE--EEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCC----cCCCce
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQ--TVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKH----SLDGRT 74 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~--v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~----~l~Gr~ 74 (456)
...++|||+|||+++||++|+++|++||+|+. |+|++++.++++||||||+|.++ +|++||+ +.. +|+++.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999976 99999999999999999999999 9999998 455 889999
Q ss_pred EEEEecchhH
Q 035855 75 VEAKRAMSRE 84 (456)
Q Consensus 75 I~v~~a~~~~ 84 (456)
|.|+++.++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 227
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=9.5e-17 Score=129.08 Aligned_cols=81 Identities=22% Similarity=0.496 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCC-cceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGR-PRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~-srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+.++.+.. +++||||+|.++++|++||+ +...|+++.|.|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999999987665 89999999999999999999 66789999999998
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8543
No 228
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=127.54 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=70.9
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
....++|||.|||+++|+++|+++|++||.|+ ++|+.+ ++++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 677654 568899999999999999997766 999999999999
Q ss_pred ccCCCC
Q 035855 185 ALPKDA 190 (456)
Q Consensus 185 a~~k~~ 190 (456)
++++..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998764
No 229
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=129.53 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALPK 188 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~k 188 (456)
++|||+|||+++|+++|+++|++||+|++|+|+++ +++||||+|+++++|++|++.++ +.|++++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999977 68899999999999999999665 9999999999999987
Q ss_pred CCC
Q 035855 189 DAN 191 (456)
Q Consensus 189 ~~~ 191 (456)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 230
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=135.84 Aligned_cols=80 Identities=19% Similarity=0.407 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTT---GRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~t---g~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~ 79 (456)
.+.++|||+|||+++||++|+++|++||+|+ ++++.++.+ +++||||||+|.++++|++||+.++.++++.|.+..
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 4679999999999999999999999999999 888888776 699999999999999999999988889999998876
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+...
T Consensus 85 ~~~~ 88 (114)
T 2dnl_A 85 SPTI 88 (114)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 5433
No 231
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=2.3e-16 Score=133.91 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=69.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
..++|||+|||+++|++||+++|++|| +|+.|+|+.+ +++|||||+|+++++|++||+.++ .+|++++|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 458999999999999999999999999 8999998643 478999999999999999998776 9999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
..++.
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 86543
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=129.21 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=69.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C--ccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H--DLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~--~l~Gr~I~V~ 183 (456)
.++++|||+|||+++|+++|+++|++||.|++|+|++ .|+||||+|+++++|++|++.++ . .|+|++|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4779999999999999999999999999999999985 36799999999999999998766 4 4899999999
Q ss_pred EccCCC
Q 035855 184 RALPKD 189 (456)
Q Consensus 184 ~a~~k~ 189 (456)
++++|+
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998875
No 233
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=5.2e-17 Score=134.78 Aligned_cols=82 Identities=23% Similarity=0.609 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
.+.++|||+|||+++|+++|+++|++||+|+.|+|++++ +++++|||||+|.+.++|++||++.+.|+++.|.|.++.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETTEECEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECCEEEEEEECCc
Confidence 346899999999999999999999999999999999998 9999999999999999999999977789999999998876
Q ss_pred hHH
Q 035855 83 REE 85 (456)
Q Consensus 83 ~~~ 85 (456)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 234
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-17 Score=136.58 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=76.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc---eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH---VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~---V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
...++|||+|||+++|++||+++|++||. |+.|+|++|+. ++++|||||+|+++++|++||+++.+.|+++.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 46789999999999999999999999998 89999999988 999999999999999999999966699999999999
Q ss_pred EccCCC
Q 035855 184 RALPKD 189 (456)
Q Consensus 184 ~a~~k~ 189 (456)
++.+++
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 988654
No 235
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=7.5e-17 Score=130.62 Aligned_cols=80 Identities=26% Similarity=0.649 Sum_probs=70.8
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchh
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~ 83 (456)
++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.+ |++|++ +...|.++.|.|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999 556899999999999765
Q ss_pred HHH
Q 035855 84 EEQ 86 (456)
Q Consensus 84 ~~~ 86 (456)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 443
No 236
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=131.39 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcC--------C
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSL--------D 71 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l--------~ 71 (456)
+.+.++|||+|||+++|+++|+++|++||+|+.|+|++++ ++++++||||+|.++++|++||+ +...| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567999999999999999999999999999999999998 99999999999999999999998 44456 5
Q ss_pred CceEEEEecch
Q 035855 72 GRTVEAKRAMS 82 (456)
Q Consensus 72 Gr~I~v~~a~~ 82 (456)
+++|.|+++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 67788888764
No 237
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.65 E-value=8e-17 Score=133.55 Aligned_cols=80 Identities=26% Similarity=0.478 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREK-TTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~-~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4579999999999999999999999999 9999999998 689999999999999999999996 456899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 96 ~~~ 98 (100)
T 2j76_E 96 DQA 98 (100)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 238
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=129.42 Aligned_cols=78 Identities=12% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLR----EYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~----e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~ 76 (456)
.+.++|||+|||+++|+++|+ ++|++||+|++|+|+.++.+ |+||||+|.++++|++||+ +..+|++++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999998766 8899999999999999999 45589999999
Q ss_pred EEecchh
Q 035855 77 AKRAMSR 83 (456)
Q Consensus 77 v~~a~~~ 83 (456)
|+++.+.
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9998654
No 239
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=131.20 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+.+ .++++||||+|.++++|++||+ +.++|+++.|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999664 4589999999999999999997 556899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 240
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=2.2e-16 Score=128.42 Aligned_cols=78 Identities=26% Similarity=0.529 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
...++|||+|||+++||++|+++|++||+|++|+|+++ +||||||+|+++++|+++....+.+.++.|.|+++.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 46789999999999999999999999999999999874 7899999999999999766565567899999999987
Q ss_pred hHH
Q 035855 83 REE 85 (456)
Q Consensus 83 ~~~ 85 (456)
+.+
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 241
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=3.4e-16 Score=134.46 Aligned_cols=79 Identities=22% Similarity=0.577 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +.+.|.++.|.|+++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 45899999999999999999999999999999999999899999999999999999999995 45579999999999864
No 242
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=129.07 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=70.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+.++|||+|||+++|+++|+++|++||.|++|+|+++ ++|||||+|+++++|++++.. ...+++++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 35689999999999999999999999999999999864 688999999999999876543 367799999999999
Q ss_pred CCCCCCC
Q 035855 187 PKDANPG 193 (456)
Q Consensus 187 ~k~~~~~ 193 (456)
++.....
T Consensus 77 ~~~~~~~ 83 (88)
T 1wf0_A 77 PKHNSNS 83 (88)
T ss_dssp CCCCCCS
T ss_pred CCCCCCC
Confidence 8876543
No 243
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=5.6e-16 Score=133.28 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|++++ ++++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 346899999999999999999999999999999999998 99999999999999999999998 556899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.+.
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 654
No 244
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=2.4e-16 Score=128.17 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=64.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRAL 186 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~ 186 (456)
.+..+|||.|||+++||++|+++|++||.|++|+|+++ +||||||+|+++++|+++.. ....+++++|+|+++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEEcC
Confidence 46789999999999999999999999999999999874 78999999999999885432 2356789999999999
Q ss_pred CCCCC
Q 035855 187 PKDAN 191 (456)
Q Consensus 187 ~k~~~ 191 (456)
++..+
T Consensus 83 ~k~~~ 87 (89)
T 3d2w_A 83 PKHNK 87 (89)
T ss_dssp -----
T ss_pred CCCcC
Confidence 87653
No 245
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.8e-16 Score=126.24 Aligned_cols=80 Identities=24% Similarity=0.479 Sum_probs=68.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCc-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-C-CccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT-F-HDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~-~-~~l~Gr~I~V~ 183 (456)
.+.++|||.|||+++|+++|+++|++||. |+.+.++ +++||||+|+++++|++||+.+ + +.|++++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46689999999999999999999999999 6666653 3679999999999999999755 4 79999999999
Q ss_pred EccCCCCCCC
Q 035855 184 RALPKDANPG 193 (456)
Q Consensus 184 ~a~~k~~~~~ 193 (456)
+++++..+.+
T Consensus 79 ~a~~~~~~~~ 88 (93)
T 2cqh_A 79 YSVSKKLRSS 88 (93)
T ss_dssp ECCCCCCCCC
T ss_pred EccCccccCC
Confidence 9998766543
No 246
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=130.51 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v~ 78 (456)
...++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|++.++|++||+. ..+|.+++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45689999999999999999999999999999998875 68999999999999999983 356999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 997543
No 247
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=5.5e-16 Score=126.98 Aligned_cols=80 Identities=19% Similarity=0.380 Sum_probs=71.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||+|||+++|+++|+++|++|+.|+.| ..+++++|||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 467899999999999999999999999988766 3467899999999999999999999777 8999999999999
Q ss_pred cCCCCC
Q 035855 186 LPKDAN 191 (456)
Q Consensus 186 ~~k~~~ 191 (456)
.++...
T Consensus 89 ~~~~~~ 94 (96)
T 1fjc_A 89 GEKGGT 94 (96)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 887653
No 248
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=5.1e-16 Score=130.83 Aligned_cols=78 Identities=18% Similarity=0.488 Sum_probs=70.4
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||+++|+++|+++|++||.|++|+|+ +|||||+|+++++|++|++.++ ..|++++|+|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4577999999999999999999999999999999998 6799999999999999998655 999999999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9987654
No 249
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=135.84 Aligned_cols=78 Identities=26% Similarity=0.463 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++++|++++.++++++||||+|.++++|++||+ +...|.++.|.|+++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 467999999999999999999999999999999999999899999999999999999999998 455799999999875
No 250
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.8e-16 Score=133.44 Aligned_cols=76 Identities=11% Similarity=0.210 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v~ 78 (456)
...++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|++.++|++||+. ..+|.+++|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45789999999999999999999999999999999975 58999999999999999983 357999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++.+++
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 997544
No 251
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=8.5e-16 Score=144.35 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=76.6
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||+++||++|+++|++||+|++|+|++|+.+++++|||||+|+++++|++||+.++ ..+.++.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3467899999999999999999999999999999999999999999999999999999999998877 899999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87654
No 252
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.2e-16 Score=125.47 Aligned_cols=81 Identities=25% Similarity=0.500 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
..++|||+|||+++|+++|+++|++||.|++| +.++.+++ ||||+|+++++|++||+++.++|++++|+|+++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 56899999999999999999999999999987 66666665 99999999999999999444999999999999987
Q ss_pred CCCCCC
Q 035855 188 KDANPG 193 (456)
Q Consensus 188 k~~~~~ 193 (456)
+.....
T Consensus 82 ~~~~~~ 87 (94)
T 2e5g_A 82 KEFQSP 87 (94)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 765443
No 253
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=129.39 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=73.8
Q ss_pred ccccEEEEcCCCCCC------CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCc-
Q 035855 107 IRTKKIFVGGLPPTL------TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGK- 178 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~------teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr- 178 (456)
...++|||+|||+++ |+++|+++|++||.|++|+|+ +.+++++|||||+|+++++|++||+.++ +.|+++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 4678999999999999999999999766 899998
Q ss_pred EEEEEEccCCCC
Q 035855 179 QVEVKRALPKDA 190 (456)
Q Consensus 179 ~I~V~~a~~k~~ 190 (456)
+|+|+++...++
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999986543
No 254
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.63 E-value=1.4e-16 Score=139.64 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.+.++|++||+ +...|.+++|.|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 346899999999999999999999999999999999999899999999999999999999998 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.+.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 255
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=7.1e-16 Score=131.00 Aligned_cols=80 Identities=16% Similarity=0.298 Sum_probs=70.9
Q ss_pred cccccEEEEcCCCCC-CCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC---CccCCcEEE
Q 035855 106 TIRTKKIFVGGLPPT-LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF---HDLNGKQVE 181 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~---~~l~Gr~I~ 181 (456)
..+.++|||+|||++ +|++||+++|++||.|++|+|++ .|+||||+|+++++|++|++.++ .+|+|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 36899999999999999998653 579999999
Q ss_pred EEEccCCCCC
Q 035855 182 VKRALPKDAN 191 (456)
Q Consensus 182 V~~a~~k~~~ 191 (456)
|+++..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999877654
No 256
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.6e-16 Score=133.03 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCccCcHHHHH---HHHhcCCCeeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHH--cCCcCCCce
Q 035855 3 SDQGKLFIGGISWETSEERLR---EYFSQYGDVLQTVVMREKTT---GRPRGFGFVVFADPSILDRVLQ--DKHSLDGRT 74 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~---e~F~~~G~V~~v~i~~d~~t---g~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~ 74 (456)
...++|||+|||+++||++|+ ++|++||+|++|+|++++.+ .+++|||||+|.++++|++||+ +.++|++++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356899999999999999999 99999999999999998764 3567999999999999999999 566899999
Q ss_pred EEEEecchhH
Q 035855 75 VEAKRAMSRE 84 (456)
Q Consensus 75 I~v~~a~~~~ 84 (456)
|.|+++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999987654
No 257
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=128.96 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v~ 78 (456)
...++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|+++++|++||+. ..+|.+++|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998864 68999999999999999983 245999999999
Q ss_pred ecchhH
Q 035855 79 RAMSRE 84 (456)
Q Consensus 79 ~a~~~~ 84 (456)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 997543
No 258
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.63 E-value=6.4e-16 Score=124.89 Aligned_cols=73 Identities=8% Similarity=0.134 Sum_probs=67.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
.+..|+|+||++.+||++|+++|.+||+|++++|+. +||||||+|.++++|++|++.++ ..|.+++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356799999999999999999999999999999964 68999999999999999998887 99999999999985
No 259
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=9.7e-17 Score=141.64 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
.+.++|||+|||+++||++|+++|++|+ |++|+|++++. +++||||||+|+++++|++||+ +.++|.++.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 4568999999999999999999999999 67999999985 9999999999999999999996 5568999999998876
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
+.
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 260
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=5.7e-16 Score=131.88 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=65.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE-----EE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ-----VE 181 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~-----I~ 181 (456)
..++|||.|||+++|++||+++|++||+|++|.|++| +||||+|+++++|++||+.++ ++|++++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4588999999999999999999999999999999876 799999999999999999666 9999998 78
Q ss_pred EEEccCCCC
Q 035855 182 VKRALPKDA 190 (456)
Q Consensus 182 V~~a~~k~~ 190 (456)
|+.+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 887776544
No 261
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=121.75 Aligned_cols=75 Identities=27% Similarity=0.486 Sum_probs=68.5
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc-C-CccCCcEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT-F-HDLNGKQVEVK 183 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~-~-~~l~Gr~I~V~ 183 (456)
..+.++|||.|||.++|+++|+++|++||.|++|+|+++ ++||||+|+++++|++|++.+ + +.|++++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999864 679999999999999999965 5 89999999999
Q ss_pred Ecc
Q 035855 184 RAL 186 (456)
Q Consensus 184 ~a~ 186 (456)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 262
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=4.2e-16 Score=139.43 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+ +.+.|.++.|.|+++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999999899999999999999999999998 4568999999999987
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
+.
T Consensus 149 ~~ 150 (158)
T 2kn4_A 149 YG 150 (158)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=132.20 Aligned_cols=81 Identities=11% Similarity=0.302 Sum_probs=72.2
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFR----QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
.+.++|||+|||+++++++|+ ++|++||.|++|.|++ +.++||||||+|+++++|++||+.++ ..|.+++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 457899999999999999876 6999999999998864 57889999999999999999998777 999999999
Q ss_pred EEEccCCCC
Q 035855 182 VKRALPKDA 190 (456)
Q Consensus 182 V~~a~~k~~ 190 (456)
|++++++..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999987653
No 264
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.62 E-value=7.8e-16 Score=124.42 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
.+.-|||+||++++||++|+++|.+||+|++++++. +||||||+|.++++|++|++ +..+|.+++|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 356899999999999999999999999999999976 57999999999999999999 5568999999999996
Q ss_pred hhH
Q 035855 82 SRE 84 (456)
Q Consensus 82 ~~~ 84 (456)
+.+
T Consensus 80 e~~ 82 (89)
T 2wbr_A 80 ENE 82 (89)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 265
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=1.4e-15 Score=139.52 Aligned_cols=85 Identities=39% Similarity=0.747 Sum_probs=78.2
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|.++++|++||+.+++.|+++.|+|+++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34778999999999999999999999999999999999999999999999999999999999999779999999999998
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.++..
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 87654
No 266
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.1e-16 Score=127.15 Aligned_cols=78 Identities=23% Similarity=0.482 Sum_probs=69.3
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.+.++|||.|||+ ++|+++|+++|++||.|++|+|. ++||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4678999999998 99999999999999999999994 6799999999999999999765 899999999999
Q ss_pred ccCCCCCC
Q 035855 185 ALPKDANP 192 (456)
Q Consensus 185 a~~k~~~~ 192 (456)
++++....
T Consensus 80 a~~~~~~~ 87 (96)
T 2kvi_A 80 SSSNARPQ 87 (96)
T ss_dssp EECCCC--
T ss_pred cCcCCCCC
Confidence 98776543
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=6.4e-16 Score=127.93 Aligned_cols=75 Identities=19% Similarity=0.408 Sum_probs=68.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
..++|||+|||.++|+++|+++|++||.|++|+|+ ++++||||+|+++++|++|++.++ +.|++++|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 357899999999999999997766 99999999999998
Q ss_pred CC
Q 035855 187 PK 188 (456)
Q Consensus 187 ~k 188 (456)
+|
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 268
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.1e-16 Score=130.88 Aligned_cols=80 Identities=28% Similarity=0.586 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++++. ++++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999853 489999999999999999998 56689999999999
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 269
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-16 Score=128.57 Aligned_cols=79 Identities=28% Similarity=0.505 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|+.| .+|+|+.++.++++++||||+|.++++|++||+ +.++|.++.|.|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 567999999999999999999999976 478889988899999999999999999999998 567899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 90 ~~~~ 93 (102)
T 2fc8_A 90 KPKG 93 (102)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 270
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=123.77 Aligned_cols=75 Identities=28% Similarity=0.586 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+ |+||||+|.++++|++||+ +..+|.+++|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3567999999999999999999999999999999998 4799999999999999998 55689999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87543
No 271
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=4.6e-16 Score=130.03 Aligned_cols=75 Identities=9% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEE
Q 035855 3 SDQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEA 77 (456)
Q Consensus 3 ~~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v 77 (456)
.+.++|||+|||+ ++||++|+++|++||+|++|+|++++ +||||+|+++++|++||+. ..+|.+++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4578999999999 99999999999999999999998753 7999999999999999983 23589999999
Q ss_pred Eecchh
Q 035855 78 KRAMSR 83 (456)
Q Consensus 78 ~~a~~~ 83 (456)
.++...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 998754
No 272
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.8e-16 Score=128.18 Aligned_cols=78 Identities=23% Similarity=0.468 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++|++| +|+++ .++++++||||+|.++++|++||+ +.+.|.++.|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4578999999999999999999999999977 55665 588999999999999999999999 45579999999999
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.++
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8764
No 273
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=124.26 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=71.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDV-VIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v-~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
...++|||.|||+++|+++|+++|++||.|++| .|+.++.++ .|||+|+++++|++||+.++ +.|++++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356899999999999999999999999999999 488887654 39999999999999998665 999999999999
Q ss_pred ccCCCC
Q 035855 185 ALPKDA 190 (456)
Q Consensus 185 a~~k~~ 190 (456)
+.+++.
T Consensus 89 a~~~~~ 94 (96)
T 2e44_A 89 IPDEMA 94 (96)
T ss_dssp CCCCCS
T ss_pred cCcccc
Confidence 998854
No 274
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=139.80 Aligned_cols=83 Identities=14% Similarity=0.335 Sum_probs=77.1
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||.|||+++++++|+++|++||+|++|.|+.|+ +++++|||||+|+++++|++||+.++ +.|++++|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 89999999999999999999999776 999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+.+..
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 88654
No 275
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9.4e-16 Score=128.85 Aligned_cols=74 Identities=19% Similarity=0.308 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCC-----ceE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDG-----RTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~G-----r~I 75 (456)
...++|||+|||+++|+++|+++|++||+|++|+|+.+ +||||+|.++++|++||+. ..+|.+ +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999886 7999999999999999994 446788 999
Q ss_pred EEEecchh
Q 035855 76 EAKRAMSR 83 (456)
Q Consensus 76 ~v~~a~~~ 83 (456)
.|+++.++
T Consensus 86 ~V~~a~~~ 93 (108)
T 1x4c_A 86 RVKVDGPR 93 (108)
T ss_dssp EEEESSCC
T ss_pred EEEeCCCC
Confidence 99998764
No 276
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.61 E-value=1.1e-15 Score=138.16 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+ +...|.++.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999998 566899999999999
Q ss_pred chhHHH
Q 035855 81 MSREEQ 86 (456)
Q Consensus 81 ~~~~~~ 86 (456)
.++...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 765543
No 277
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.3e-15 Score=122.17 Aligned_cols=79 Identities=18% Similarity=0.366 Sum_probs=70.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|| ++|+++|+++|++||+|++|+|. ++++||||+|+++++|++||+.++ +.|++++|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999994 467899999999999999997766 8999999999999
Q ss_pred cCCCCCCC
Q 035855 186 LPKDANPG 193 (456)
Q Consensus 186 ~~k~~~~~ 193 (456)
.++.....
T Consensus 85 ~~~~~~~~ 92 (97)
T 1x5p_A 85 RKQPMLDS 92 (97)
T ss_dssp SSCCCCCS
T ss_pred CCCCCCCC
Confidence 98765443
No 278
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=8.9e-17 Score=133.10 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecch
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~ 82 (456)
+.++|||+|||+++|+++|+++|++|++|.. +++.++.+++++|||||+|.+.++|++||+ +.+.|.++.|.|+++.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 5789999999999999999999999999988 777777789999999999999999999998 45589999999999875
Q ss_pred h
Q 035855 83 R 83 (456)
Q Consensus 83 ~ 83 (456)
+
T Consensus 95 ~ 95 (101)
T 1fj7_A 95 R 95 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 279
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.6e-15 Score=123.93 Aligned_cols=75 Identities=24% Similarity=0.517 Sum_probs=68.7
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.+.++|||+|||+ ++++++|+++|++||.|++|+|. +|||||+|+++++|++|++.++ ..|++++|+|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4678999999998 99999999999999999999993 6799999999999999998666 899999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-17 Score=138.39 Aligned_cols=85 Identities=24% Similarity=0.458 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCC
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQ--------TVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLD 71 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~--------v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~ 71 (456)
+.+.++|||+|||+++|+++|+++|++||+|+. |+|+.++.++++++||||+|.+.++|++||+ +...|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 567899999999999999999999999999999 8999998899999999999999999999998 556899
Q ss_pred CceEEEEecchhHHH
Q 035855 72 GRTVEAKRAMSREEQ 86 (456)
Q Consensus 72 Gr~I~v~~a~~~~~~ 86 (456)
++.|.|+++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999998776543
No 281
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-16 Score=126.65 Aligned_cols=77 Identities=32% Similarity=0.589 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecch
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMS 82 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~ 82 (456)
...++|||+|||+++||++|+++|++||+|++|+|+++ +|+||||+|.++++|++|+...+.+.++.|+|.++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 46799999999999999999999999999999999864 6899999999999999887776678999999998876
Q ss_pred hH
Q 035855 83 RE 84 (456)
Q Consensus 83 ~~ 84 (456)
+.
T Consensus 78 ~~ 79 (88)
T 1wf0_A 78 KH 79 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 282
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=124.23 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCC--CceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLD--GRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~--Gr~I~v~ 78 (456)
...++|||+|||+++||++|+++|++||+|++|+|+.+ ++||||+|.++++|++||+ +.+.|. ++.|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998864 6899999999999999998 556888 8999999
Q ss_pred ecchh
Q 035855 79 RAMSR 83 (456)
Q Consensus 79 ~a~~~ 83 (456)
++.++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98764
No 283
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.8e-16 Score=130.44 Aligned_cols=76 Identities=12% Similarity=0.198 Sum_probs=67.5
Q ss_pred CCCcEEEEcCCCcc-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc----CCcCCCceEEE
Q 035855 3 SDQGKLFIGGISWE-TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD----KHSLDGRTVEA 77 (456)
Q Consensus 3 ~~~r~LfVgnLP~~-vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~----~~~l~Gr~I~v 77 (456)
...++|||+|||++ +||++|+++|++||+|++|+|++ +|+||||+|+++++|++||+. ..+|.+++|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 99999999999999999999975 368999999999999999983 34699999999
Q ss_pred EecchhH
Q 035855 78 KRAMSRE 84 (456)
Q Consensus 78 ~~a~~~~ 84 (456)
.++..+.
T Consensus 97 ~~a~~~~ 103 (112)
T 1x4f_A 97 DLSEKYK 103 (112)
T ss_dssp EEECSCS
T ss_pred EECcccc
Confidence 9986543
No 284
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=124.81 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CC--cCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KH--SLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~--~l~Gr~I~v~ 78 (456)
..+++|||+|||+++||++|+++|++||+|++|+|++ .|+||||+|++.++|++||+. .. .|.+++|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4578999999999999999999999999999999985 358999999999999999983 22 4789999999
Q ss_pred ecchh
Q 035855 79 RAMSR 83 (456)
Q Consensus 79 ~a~~~ 83 (456)
+++.+
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 98754
No 285
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.60 E-value=1.7e-15 Score=126.01 Aligned_cols=76 Identities=20% Similarity=0.408 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++||+ +.++|+++.|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4568999999999999999999999999999999873 599999999999999998 566899999999999
Q ss_pred chhHHH
Q 035855 81 MSREEQ 86 (456)
Q Consensus 81 ~~~~~~ 86 (456)
.++...
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 776543
No 286
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=129.58 Aligned_cols=78 Identities=27% Similarity=0.534 Sum_probs=68.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNT---QRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~t---g~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
...++|||+|||+++|+++|+++|++||+|+ ++++.++.+ ++++|||||+|+++++|++||+.+ ++|+++.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~-~~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC-LEEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS-EEETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh-hhcCCcEEEec
Confidence 3568999999999999999999999999999 889888887 699999999999999999999987 45777777666
Q ss_pred Ecc
Q 035855 184 RAL 186 (456)
Q Consensus 184 ~a~ 186 (456)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
No 287
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=9.8e-16 Score=125.62 Aligned_cols=81 Identities=16% Similarity=0.383 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFR----QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
.+.++|||.|||.++|+++|+ ++|++||.|++|+|++ ++++++||||+|+++++|++|++.++ ..|++++|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 467899999999999999999 9999999999999874 46778999999999999999998665 999999999
Q ss_pred EEEccCCCC
Q 035855 182 VKRALPKDA 190 (456)
Q Consensus 182 V~~a~~k~~ 190 (456)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998754
No 288
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=121.28 Aligned_cols=71 Identities=17% Similarity=0.388 Sum_probs=63.9
Q ss_pred CcEEEEcCCCccC------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCc-eE
Q 035855 5 QGKLFIGGISWET------SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGR-TV 75 (456)
Q Consensus 5 ~r~LfVgnLP~~v------tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr-~I 75 (456)
+++|||+|||+++ |+++|+++|++||+|++|+|+ +.+++++|||||+|.++++|++||+ +...|+++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 3588999999999999999999999 45578888 77
Q ss_pred EE
Q 035855 76 EA 77 (456)
Q Consensus 76 ~v 77 (456)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 289
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=2.2e-15 Score=127.60 Aligned_cols=80 Identities=11% Similarity=0.267 Sum_probs=72.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|||.++|+++|+++|++||.|++|.|+++. +++|||||+|+++++|++|++.++ ..|+++.|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467899999999999999999999999999999999764 458999999999999999999655 9999999999999
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
.++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8654
No 290
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=9.3e-16 Score=121.93 Aligned_cols=71 Identities=14% Similarity=0.323 Sum_probs=65.3
Q ss_pred cEEEEcCCCCCC------CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCc-EEE
Q 035855 110 KKIFVGGLPPTL------TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGK-QVE 181 (456)
Q Consensus 110 ~~LfV~nLp~~~------teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr-~I~ 181 (456)
++|||.|||.++ |+++|+++|++||.|++|+|+ +.+++++|||||+|+++++|++|++.++ ..|+++ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 4678999999999999999999999776 899999 887
Q ss_pred E
Q 035855 182 V 182 (456)
Q Consensus 182 V 182 (456)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 291
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-15 Score=126.41 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=67.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+ ++++||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 446899999999999999999999999999999998 356899999999999999998 566899999999988
Q ss_pred ch
Q 035855 81 MS 82 (456)
Q Consensus 81 ~~ 82 (456)
++
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 292
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=127.32 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCccC------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCc-e
Q 035855 4 DQGKLFIGGISWET------SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGR-T 74 (456)
Q Consensus 4 ~~r~LfVgnLP~~v------tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr-~ 74 (456)
..++|||+|||+++ |+++|+++|++||+|++|.|+ +.+++++|||||+|.+.++|++||+ +...|.++ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 889999999999999999988 3578999999999999999999999 45689998 9
Q ss_pred EEEEecch
Q 035855 75 VEAKRAMS 82 (456)
Q Consensus 75 I~v~~a~~ 82 (456)
|.|+++..
T Consensus 92 l~V~~a~~ 99 (105)
T 2nlw_A 92 FRVNLFTD 99 (105)
T ss_dssp EEEECSCC
T ss_pred EEEEEcch
Confidence 99998864
No 293
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=1.5e-15 Score=125.26 Aligned_cols=75 Identities=23% Similarity=0.565 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|++|+|+++ |+||||+|.++++|++||+ +.++|.+++|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999999864 5899999999999999997 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 294
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=119.74 Aligned_cols=74 Identities=24% Similarity=0.457 Sum_probs=66.9
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc---CCcCCCceEEEE
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD---KHSLDGRTVEAK 78 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~---~~~l~Gr~I~v~ 78 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|+++ ++||||+|.+.++|++||+. ...|.+++|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 356789999999999999999999999999999999974 68999999999999999984 457999999998
Q ss_pred ecc
Q 035855 79 RAM 81 (456)
Q Consensus 79 ~a~ 81 (456)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 295
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-16 Score=131.86 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||.|..|.+..+..++++++||||+|.+.++|++||+ +.+.|.++.|.|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 356899999999999999999999999999554443333378899999999999999999998 556899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpx_A 103 KNKK 106 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
No 296
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=5.6e-15 Score=131.51 Aligned_cols=82 Identities=23% Similarity=0.474 Sum_probs=76.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEccC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRALP 187 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~~ 187 (456)
.++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|.++++|++|++.++ ..|++++|+|+++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999999999999999999999999999998655 999999999999987
Q ss_pred CCC
Q 035855 188 KDA 190 (456)
Q Consensus 188 k~~ 190 (456)
+..
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 297
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=126.46 Aligned_cols=76 Identities=20% Similarity=0.474 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++||||+|.+.++|++||+ +.++|.++.|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 46789999999999999999999999999999999986 6899999999999999997 566899999999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 298
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.59 E-value=3.6e-15 Score=133.24 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=77.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
+.++|||+|||+++|+++|+++|++||.|++|+|++++.+++++|||||+|+++++|++|++.++ ..|++++|+|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45899999999999999999999999999999999999999999999999999999999998655 99999999999998
Q ss_pred CCCC
Q 035855 187 PKDA 190 (456)
Q Consensus 187 ~k~~ 190 (456)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=2.7e-15 Score=137.61 Aligned_cols=81 Identities=21% Similarity=0.413 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++|+++|+++|++||+|++|.|+.++ ++++++||||+|.++++|++||+ +...|+++.|.|+++.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45899999999999999999999999999999999998 89999999999999999999999 5568999999999987
Q ss_pred hhHH
Q 035855 82 SREE 85 (456)
Q Consensus 82 ~~~~ 85 (456)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 300
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=123.38 Aligned_cols=75 Identities=15% Similarity=0.289 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||+++|+++|+++|++||+|. ++|+.+ ++++||||+|.++++|++||+ +..+|.++.|.|+++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999997 666654 578999999999999999998 5668999999999987
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 301
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=3.4e-15 Score=138.80 Aligned_cols=80 Identities=14% Similarity=0.324 Sum_probs=74.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
+.++|||.|||+++|+++|+++|++||.|+.|+|++++. ++++|||||+|+++++|++||+.+++.|+|++|+|+++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 568999999999999999999999999999999999875 8899999999999999999999888999999999998775
Q ss_pred C
Q 035855 188 K 188 (456)
Q Consensus 188 k 188 (456)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 302
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=129.51 Aligned_cols=82 Identities=21% Similarity=0.285 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCccCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEE
Q 035855 4 DQGKLFIGGISWETSEERLR----EYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEA 77 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~----e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v 77 (456)
..++|||+|||+++++++|+ ++|++||+|++|.|++ ++++||||||+|.+.++|++||+ +...|.++.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 46899999999999999876 6999999999988754 67889999999999999999998 556899999999
Q ss_pred EecchhHHHhh
Q 035855 78 KRAMSREEQQF 88 (456)
Q Consensus 78 ~~a~~~~~~~~ 88 (456)
+++..+.+...
T Consensus 105 ~~a~~~~~~~~ 115 (127)
T 2a3j_A 105 TFSETPQSQVA 115 (127)
T ss_dssp EECCCCCHHHH
T ss_pred EEccCcchhcc
Confidence 99987665543
No 303
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=1.8e-15 Score=128.43 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
...++|||+|||+++|+++|+++|++|| +|..+.|+.+ +++|||||+|.+.++|++||+ +..+|+++.|.|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999 8999988643 478999999999999999998 55689999999998
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 304
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=7.7e-15 Score=132.47 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCC--cEEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG--KQVEVKR 184 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G--r~I~V~~ 184 (456)
...+|||.||++++|+++|+++|++||+|++|+|+.+ ++++||||+|+++++|++|++.++ .+|.+ ++|+|++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4577999999999999999999999999999999754 357899999999999999999887 88865 9999999
Q ss_pred ccCCCCC
Q 035855 185 ALPKDAN 191 (456)
Q Consensus 185 a~~k~~~ 191 (456)
+++++..
T Consensus 121 Ak~~~l~ 127 (164)
T 1sjr_A 121 SKLTSLN 127 (164)
T ss_dssp CSSSSCC
T ss_pred ecCCccc
Confidence 9987543
No 305
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.9e-15 Score=126.75 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=68.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
..++|||.|||+++|+++|+++|++||.|++|.|++ .++||||+|+++++|++||+.++ +.|++++|.|+++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 567999999999999999999999999999999874 46799999999999999998766 99999999999987
Q ss_pred CC
Q 035855 187 PK 188 (456)
Q Consensus 187 ~k 188 (456)
.+
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 306
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=120.78 Aligned_cols=74 Identities=23% Similarity=0.458 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++||+ +.++|.++.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35679999999999999999999999999999999984 399999999999999998 56689999999999
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.++
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9654
No 307
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=4.1e-15 Score=125.26 Aligned_cols=75 Identities=19% Similarity=0.424 Sum_probs=68.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|.|+ ++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999999999998 5899999999999999998 56689999999999
Q ss_pred cchhH
Q 035855 80 AMSRE 84 (456)
Q Consensus 80 a~~~~ 84 (456)
+.++.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 87643
No 308
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.1e-15 Score=126.61 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|+.|.|+. +++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999998874 56899999999999999998 55689999999999
Q ss_pred cch
Q 035855 80 AMS 82 (456)
Q Consensus 80 a~~ 82 (456)
+..
T Consensus 81 a~~ 83 (111)
T 1whx_A 81 API 83 (111)
T ss_dssp EET
T ss_pred CCC
Confidence 865
No 309
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.57 E-value=3.3e-15 Score=120.72 Aligned_cols=75 Identities=15% Similarity=0.249 Sum_probs=68.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
..++|||+|||+++|+++|+++|++| .|++|+|. +++|||||+|+++++|++|++.++ ++|++++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999984 578999999999999999999666 89999999999987
Q ss_pred CCC
Q 035855 187 PKD 189 (456)
Q Consensus 187 ~k~ 189 (456)
.+.
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.3e-15 Score=122.13 Aligned_cols=76 Identities=26% Similarity=0.490 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecc
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~ 81 (456)
...++|||+|||+++|+++|+++|++||+|++| +.++.+++ ||||+|.++++|++||+ +.+.|+++.|.|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 456899999999999999999999999999987 55555655 99999999999999999 4457899999998775
Q ss_pred hh
Q 035855 82 SR 83 (456)
Q Consensus 82 ~~ 83 (456)
++
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 43
No 311
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=2.2e-15 Score=123.47 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCccCcHHHHH----HHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLR----EYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~----e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~ 76 (456)
...++|||+|||+++|+++|+ ++|++||+|++|+|++ ++++++||||+|.+.++|++||+ +...|.++.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 567999999999999999999 9999999999999874 56788999999999999999998 56689999999
Q ss_pred EEecchhHHH
Q 035855 77 AKRAMSREEQ 86 (456)
Q Consensus 77 v~~a~~~~~~ 86 (456)
|+++.++.+.
T Consensus 83 v~~a~~~~~~ 92 (97)
T 1nu4_A 83 IQYAKTDSDI 92 (97)
T ss_dssp EEECSSCCTH
T ss_pred EEEccCCCcc
Confidence 9999775543
No 312
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.5e-15 Score=119.74 Aligned_cols=74 Identities=18% Similarity=0.415 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
+.+.++|||+|||+++|+++|+++|++||+|++|+|++ +||||+|.++++|++||+ +...|.++.|.|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35679999999999999999999999999999999984 399999999999999998 56689999999999
Q ss_pred cchh
Q 035855 80 AMSR 83 (456)
Q Consensus 80 a~~~ 83 (456)
+.+.
T Consensus 78 a~~~ 81 (90)
T 2dnp_A 78 STKG 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 313
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=5.1e-15 Score=121.58 Aligned_cols=75 Identities=25% Similarity=0.510 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEe
Q 035855 3 SDQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKR 79 (456)
Q Consensus 3 ~~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~ 79 (456)
++.++|||+|||+ ++|+++|+++|++||+|++|+|. ++||||+|.+.++|++||+ +...|.++.|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4679999999998 99999999999999999999984 5899999999999999999 55688999999999
Q ss_pred cchhHH
Q 035855 80 AMSREE 85 (456)
Q Consensus 80 a~~~~~ 85 (456)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 876543
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=4.3e-15 Score=120.02 Aligned_cols=73 Identities=14% Similarity=0.280 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++||++|+++|++| +|++|+|. ++||||||+|.++++|++||+ +..+|.+++|.|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999884 578999999999999999999 455799999999988
Q ss_pred ch
Q 035855 81 MS 82 (456)
Q Consensus 81 ~~ 82 (456)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=2.7e-15 Score=132.23 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=71.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVV--I---MYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQV 180 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~--i---~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I 180 (456)
.+.++|||+|||+++|+++|+++|++||.|+.|. + ++...+++++|||||+|.+.++|++||+.++ ..|++++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4678999999999999999999999999988741 1 1113468899999999999999999999666 99999999
Q ss_pred EEEEccCCCCC
Q 035855 181 EVKRALPKDAN 191 (456)
Q Consensus 181 ~V~~a~~k~~~ 191 (456)
.|++++++..+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999875543
No 316
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-15 Score=121.90 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEE-EEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQT-VVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v-~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..++|||+|||+++|+++|+++|++||+|++| .|+.++.++ .|||+|.+.++|++||+ +...|.+++|.|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999 588876553 39999999999999998 567899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 317
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=119.65 Aligned_cols=73 Identities=25% Similarity=0.381 Sum_probs=65.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC--CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY--GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~--G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
.+.++|||+|||+++|+++|+++|++| +.|+.|+++ ++||||+|.+.++|++||+ +.+.|.++.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 457899999999999999999999999 999988775 4799999999999999999 5568999999999
Q ss_pred ecchh
Q 035855 79 RAMSR 83 (456)
Q Consensus 79 ~a~~~ 83 (456)
++.++
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 98754
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-15 Score=121.40 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=64.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cC-CcCCCceEEEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGD-VLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DK-HSLDGRTVEAK 78 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~-~~l~Gr~I~v~ 78 (456)
.+.++|||+|||+++||++|+++|++||+ |..++++ +++||||+|.++++|++||+ +. .+|+++.|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 56789999999999999999999999999 5555553 36899999999999999998 45 67999999999
Q ss_pred ecchh
Q 035855 79 RAMSR 83 (456)
Q Consensus 79 ~a~~~ 83 (456)
++.++
T Consensus 79 ~a~~~ 83 (93)
T 2cqh_A 79 YSVSK 83 (93)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99764
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=123.53 Aligned_cols=79 Identities=14% Similarity=0.241 Sum_probs=68.8
Q ss_pred ccccEEEE--cCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc-----CCc
Q 035855 107 IRTKKIFV--GGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL-----NGK 178 (456)
Q Consensus 107 ~~~~~LfV--~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l-----~Gr 178 (456)
.++++||| +||++++||++|+++|++||+|++|+|+.+ |+||||+|+++++|++|++.++ ++| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 36789999 669999999999999999999999988642 6899999999999999998777 887 789
Q ss_pred EEEEEEccCCCCC
Q 035855 179 QVEVKRALPKDAN 191 (456)
Q Consensus 179 ~I~V~~a~~k~~~ 191 (456)
+|.|.+++..+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999998865543
No 320
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=6.3e-15 Score=125.41 Aligned_cols=73 Identities=19% Similarity=0.323 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCce-----E
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRT-----V 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~-----I 75 (456)
...++|||+|||+++||++|+++|++||+|++|.|+.+ +||||+|+++++|++||+ +..+|+++. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999875 899999999999999999 556889988 6
Q ss_pred EEEecch
Q 035855 76 EAKRAMS 82 (456)
Q Consensus 76 ~v~~a~~ 82 (456)
+|+.+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6666554
No 321
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.4e-15 Score=126.59 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=68.0
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----H-H---HHHHHHH--HcC-Cc
Q 035855 110 KKIFVGGL----PPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----E-D---AVDRVLQ--KTF-HD 174 (456)
Q Consensus 110 ~~LfV~nL----p~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~-e---aa~aal~--~~~-~~ 174 (456)
++|||.|| |+.++|++|+++|++||+|.+|.++.|++|++++|||||+|.+ + + +|.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999984 2 2 2777777 434 89
Q ss_pred cCCcEEEEEEcc
Q 035855 175 LNGKQVEVKRAL 186 (456)
Q Consensus 175 l~Gr~I~V~~a~ 186 (456)
|+|++|+|++..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999765
No 322
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=3e-15 Score=122.58 Aligned_cols=76 Identities=18% Similarity=0.400 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc--CCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD--KHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~--~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++|++|..+ +.+++++|||||+|.++++|++||+. ...|.++.|.|+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 457899999999999999999999999887655 34788999999999999999999994 45799999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 654
No 323
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.54 E-value=1.4e-14 Score=119.40 Aligned_cols=74 Identities=26% Similarity=0.504 Sum_probs=66.6
Q ss_pred CCCCcEEEEcCCCc-cCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEE
Q 035855 2 DSDQGKLFIGGISW-ETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAK 78 (456)
Q Consensus 2 e~~~r~LfVgnLP~-~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~ 78 (456)
.++.++|||+|||+ ++|+++|+++|++||+|++|+|. ++||||+|.+.++|++||+ +...|.++.|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35789999999998 99999999999999999999983 6899999999999999999 4557899999999
Q ss_pred ecchh
Q 035855 79 RAMSR 83 (456)
Q Consensus 79 ~a~~~ 83 (456)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 88643
No 324
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.54 E-value=8.6e-15 Score=130.01 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|+++ ++|||||+|.+.++|++||+ +...|.++.|.|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45689999999999999999999999999999999886 57999999999999999998 567899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 325
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.54 E-value=6.3e-15 Score=131.71 Aligned_cols=79 Identities=39% Similarity=0.751 Sum_probs=74.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchh
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~ 83 (456)
.++|||+|||+++|+++|+++|++||+|++++|+.++.+++++|||||+|.++++|++||+ +...|.++.|.|+++.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCC
Confidence 5799999999999999999999999999999999998899999999999999999999999 445899999999999764
No 326
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.54 E-value=2.7e-14 Score=124.24 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=70.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHcC-CccCC--cEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGF-GFISFDTEDAVDRVLQKTF-HDLNG--KQVEVK 183 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGf-AFV~F~s~eaa~aal~~~~-~~l~G--r~I~V~ 183 (456)
+..+|||.||++.+|+++|+++|++||+|++|+|+.+ .++| |||+|+++++|++|++.++ .+|.+ ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4567889999999999999999999999999998764 2678 9999999999999998888 99988 899999
Q ss_pred EccCCCCC
Q 035855 184 RALPKDAN 191 (456)
Q Consensus 184 ~a~~k~~~ 191 (456)
+++++.-.
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99987543
No 327
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=8.3e-15 Score=123.25 Aligned_cols=71 Identities=23% Similarity=0.441 Sum_probs=65.2
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISWE-TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~-vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..++|||+|||++ +|+++|+++|++||+|++|+| +++||||+|.++++|++||+ +...|+++.|.|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3489999999999 999999999999999999998 46899999999999999997 566899999999998
Q ss_pred ch
Q 035855 81 MS 82 (456)
Q Consensus 81 ~~ 82 (456)
.+
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 328
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=5.2e-14 Score=121.62 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=67.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHHHcC-CccCC--cEEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGF-GFISFDTEDAVDRVLQKTF-HDLNG--KQVEVK 183 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGf-AFV~F~s~eaa~aal~~~~-~~l~G--r~I~V~ 183 (456)
....|||.||++.+|+++|+++|++||.|++|+|+.. +|| |||+|+++++|++|++.++ .+|.+ ++|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 4455789999999999999999999999999999652 276 9999999999999998776 89987 699999
Q ss_pred EccCCCC
Q 035855 184 RALPKDA 190 (456)
Q Consensus 184 ~a~~k~~ 190 (456)
+++++..
T Consensus 98 ~Ak~~~l 104 (124)
T 2e5i_A 98 YARPTRL 104 (124)
T ss_dssp CCSCSCC
T ss_pred EecCCcc
Confidence 9998764
No 329
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.3e-14 Score=127.40 Aligned_cols=79 Identities=29% Similarity=0.543 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|||+++|+++|+++|++||+|+.+.|+.++.+++++|||||+|.++++|++||+ +...|.++.|.|+++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 456899999999999999999999999999999999999899999999999999999999998 566899999999998
Q ss_pred c
Q 035855 81 M 81 (456)
Q Consensus 81 ~ 81 (456)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 330
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.3e-14 Score=114.86 Aligned_cols=72 Identities=25% Similarity=0.517 Sum_probs=64.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhc----C-------ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCcc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAY----G-------HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDL 175 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~f----G-------~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l 175 (456)
.+.++|||+|||+++|+++|+++|++| | .|++|+++++ ++||||+|+++++|++|+.++++.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 367899999999999999999999999 8 8999999755 6799999999999999994444999
Q ss_pred CCcEEEEEE
Q 035855 176 NGKQVEVKR 184 (456)
Q Consensus 176 ~Gr~I~V~~ 184 (456)
++++|+|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 331
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.53 E-value=1.9e-14 Score=134.02 Aligned_cols=81 Identities=16% Similarity=0.498 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|+.|+|++++.++++++||||+|.+.++|++||+ +..+|.++.|.|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345899999999999999999999999999999999999899999999999999999999999 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 765
No 332
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1e-14 Score=125.72 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=68.9
Q ss_pred cEEEEcCC----CccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHHH----cCCc
Q 035855 6 GKLFIGGI----SWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD----PSI----LDRVLQ----DKHS 69 (456)
Q Consensus 6 r~LfVgnL----P~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d----~e~----A~kAl~----~~~~ 69 (456)
++|||+|| |+.++|++|+++|+.||+|.+|.++.|+.|++++|||||+|.| +++ |.+|++ +...
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 788877 4568
Q ss_pred CCCceEEEEecchh
Q 035855 70 LDGRTVEAKRAMSR 83 (456)
Q Consensus 70 l~Gr~I~v~~a~~~ 83 (456)
|++++|+|+....-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999876543
No 333
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=2.3e-14 Score=149.20 Aligned_cols=82 Identities=26% Similarity=0.545 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~ 81 (456)
..++|||+|||++||+++|+++|++||+|+.|.|+.++.+++++|||||+|.+.++|++||+ +.++|.++.|.|+++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34799999999999999999999999999999999999999999999999999999999998 4568999999999997
Q ss_pred hhHH
Q 035855 82 SREE 85 (456)
Q Consensus 82 ~~~~ 85 (456)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 334
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=5e-14 Score=118.25 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=71.3
Q ss_pred ccccEEEEcCCCC-----CCCHHHHHHHHHhcCceeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE
Q 035855 107 IRTKKIFVGGLPP-----TLTEDGFRQYFEAYGHVTDVVIMYDQNT-QRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ 179 (456)
Q Consensus 107 ~~~~~LfV~nLp~-----~~teedL~~~F~~fG~V~~v~i~~d~~t-g~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~ 179 (456)
.++++|+|.||.. +.+++||+++|++||+|++|+|++++.+ .+++|||||+|+++++|++|++.++ +.|++|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 3478999999999999999999998764 6899999999999999999998776 9999999
Q ss_pred EEEEEccC
Q 035855 180 VEVKRALP 187 (456)
Q Consensus 180 I~V~~a~~ 187 (456)
|.|+++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 335
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.51 E-value=1.7e-14 Score=115.57 Aligned_cols=71 Identities=21% Similarity=0.531 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC----C-------CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcC
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY----G-------DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSL 70 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~----G-------~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l 70 (456)
.+.++|||+|||+++|+++|+++|++| + +|.++.++++ |+||||+|.++++|++||. +...|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEE
Confidence 457999999999999999999999999 8 8999998865 6899999999999999995 45578
Q ss_pred CCceEEEEe
Q 035855 71 DGRTVEAKR 79 (456)
Q Consensus 71 ~Gr~I~v~~ 79 (456)
.++.|.|++
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999875
No 336
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=4e-14 Score=131.56 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=72.0
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCCceEEEEecchh
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDGRTVEAKRAMSR 83 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~Gr~I~v~~a~~~ 83 (456)
.++|||+|||+++|+++|+++|++||+|..|+|++++ +++++|||||+|.++++|++||+ ..++|+++.|.|+++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4899999999999999999999999999999999987 58999999999999999999998 356899999999987654
Q ss_pred H
Q 035855 84 E 84 (456)
Q Consensus 84 ~ 84 (456)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.50 E-value=4.4e-15 Score=130.85 Aligned_cols=82 Identities=18% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTV--V---MREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~--i---~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I 75 (456)
...++|||+|||+++|+++|+++|++||.|..|. + ++...+++++|||||+|.+.++|++||+ +...|.++.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3568999999999999999999999999998751 1 1112378899999999999999999999 5568999999
Q ss_pred EEEecchhH
Q 035855 76 EAKRAMSRE 84 (456)
Q Consensus 76 ~v~~a~~~~ 84 (456)
.|+++.+..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999996543
No 338
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=4.2e-14 Score=121.62 Aligned_cols=77 Identities=18% Similarity=0.377 Sum_probs=68.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
.+.++|||.|| ++|+++|+++|++||.|++|+|+ ++++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999996 467899999999999999997766 9999999999999
Q ss_pred cCCCCC
Q 035855 186 LPKDAN 191 (456)
Q Consensus 186 ~~k~~~ 191 (456)
.++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 987654
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=6e-14 Score=126.63 Aligned_cols=76 Identities=14% Similarity=0.270 Sum_probs=66.6
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCC--ceEEEEec
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDG--RTVEAKRA 80 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G--r~I~v~~a 80 (456)
..+|||+||++++||++|+++|++||+|++|+|+.++ +++||||+|.+.++|++||+ +..+|.+ ++|+|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3578999999999999999999999999999987532 57999999999999999999 4557755 99999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8653
No 340
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=4.2e-14 Score=126.90 Aligned_cols=77 Identities=22% Similarity=0.527 Sum_probs=72.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
..++|||+|||+++|+++|+++|++||+|+.++|++++.+++++|||||+|.++++|++||+ +..+|+++.|.|+++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 35899999999999999999999999999999999998899999999999999999999998 566899999999987
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.49 E-value=3e-14 Score=130.79 Aligned_cols=81 Identities=21% Similarity=0.491 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
...++|||+|||+++|+++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+ +...|+++.|.|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456999999999999999999999999999999999998899999999999999999999998 566899999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 342
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.49 E-value=7e-14 Score=125.48 Aligned_cols=83 Identities=25% Similarity=0.463 Sum_probs=73.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCC--CcceEEEEEeCCHHHHHHHHHHcC-CccC---CcEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQ--RPRGFGFISFDTEDAVDRVLQKTF-HDLN---GKQVE 181 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg--~~rGfAFV~F~s~eaa~aal~~~~-~~l~---Gr~I~ 181 (456)
+.++|||+|||+++|+++|+++|++||+|++|+|++++.++ +++|||||+|.++++|++|++.++ ..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45899999999999999999999999999999999999887 899999999999999999998766 5554 67888
Q ss_pred EEEccCCCC
Q 035855 182 VKRALPKDA 190 (456)
Q Consensus 182 V~~a~~k~~ 190 (456)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888776543
No 343
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.5e-14 Score=115.06 Aligned_cols=73 Identities=18% Similarity=0.377 Sum_probs=65.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|| ++|+++|+++|++||+|++|+|. ++++||||+|.+.++|++||+ +.+.|.+++|.|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 99999999999999999999985 467899999999999999998 455799999999998
Q ss_pred chh
Q 035855 81 MSR 83 (456)
Q Consensus 81 ~~~ 83 (456)
.++
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=7.1e-14 Score=114.11 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=64.8
Q ss_pred ccccE-EEEcCCCCCCCHHH----HHHHHHhc-CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE
Q 035855 107 IRTKK-IFVGGLPPTLTEDG----FRQYFEAY-GHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ 179 (456)
Q Consensus 107 ~~~~~-LfV~nLp~~~teed----L~~~F~~f-G~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~ 179 (456)
.++.+ |||.|||+++++++ |+++|++| |+|.+| |. |||||+|++.++|++|++.++ .+|.+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34566 89999999999988 55899999 599988 22 899999999999999998766 9999999
Q ss_pred EEEEEccCCCCC
Q 035855 180 VEVKRALPKDAN 191 (456)
Q Consensus 180 I~V~~a~~k~~~ 191 (456)
|+|++|+.+.+-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999987653
No 345
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=8.2e-14 Score=130.60 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=70.2
Q ss_pred cccEEEEcCCC-CCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLP-PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp-~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
+.++|||+||| +++|+++|+++|++||.|++|+|++++ +|||||+|+++++|++||+.++ ++|.+++|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 899999999999999999999998753 6899999999999999998666 9999999999998
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 346
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-13 Score=114.38 Aligned_cols=83 Identities=13% Similarity=0.309 Sum_probs=70.4
Q ss_pred cccccEEEEcCCCCCCC-----------HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-C
Q 035855 106 TIRTKKIFVGGLPPTLT-----------EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-H 173 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~t-----------eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~ 173 (456)
..++++|+|.||....+ +++|+++|++||.|++|.| .|+ .++|||||+|+++++|++|++.++ +
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 35789999999954432 6899999999999999966 554 379999999999999999998777 9
Q ss_pred ccCCcEEEEEEccCCCCCC
Q 035855 174 DLNGKQVEVKRALPKDANP 192 (456)
Q Consensus 174 ~l~Gr~I~V~~a~~k~~~~ 192 (456)
.|++++|+|+++.++....
T Consensus 88 ~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp EETTEECEEEECCSCCCSS
T ss_pred EECCcEEEEEEeCCCCCcc
Confidence 9999999999999876543
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.6e-14 Score=120.05 Aligned_cols=73 Identities=14% Similarity=0.159 Sum_probs=60.7
Q ss_pred CCCcEEEE--cCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cC-----CCc
Q 035855 3 SDQGKLFI--GGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SL-----DGR 73 (456)
Q Consensus 3 ~~~r~LfV--gnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l-----~Gr 73 (456)
...++||| +||++++||++|+++|++||+|++|+|+. .|+||||+|.++++|++|++.++ +| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 45688999 77999999999999999999999988764 26899999999999999999443 44 456
Q ss_pred eEEEEecc
Q 035855 74 TVEAKRAM 81 (456)
Q Consensus 74 ~I~v~~a~ 81 (456)
+|.|.++.
T Consensus 97 ~l~v~~a~ 104 (114)
T 2cq2_A 97 TLYLNFVE 104 (114)
T ss_dssp ECEEEEES
T ss_pred EEEEEecc
Confidence 67776654
No 348
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=2.7e-13 Score=132.02 Aligned_cols=81 Identities=16% Similarity=0.384 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEE
Q 035855 107 IRTKKIFVGGLPPTLTEDGFR----QYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVE 181 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~----~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~ 181 (456)
.++++|||+|||+++|+++|+ ++|++||.|++|+|++ ++++||||||+|+++++|++||+.++ ..|.++.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 467999999999999999977 8999999999999986 57789999999999999999997666 999999999
Q ss_pred EEEccCCCC
Q 035855 182 VKRALPKDA 190 (456)
Q Consensus 182 V~~a~~k~~ 190 (456)
|++++.+..
T Consensus 84 v~~a~~~~~ 92 (282)
T 3pgw_A 84 IQYAKTDSD 92 (282)
T ss_pred EEEeccCcc
Confidence 999976553
No 349
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.44 E-value=2.1e-13 Score=118.60 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=65.1
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHH--cCCcCCC--ceEEEEec
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGF-GFVVFADPSILDRVLQ--DKHSLDG--RTVEAKRA 80 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGf-aFVeF~d~e~A~kAl~--~~~~l~G--r~I~v~~a 80 (456)
.+|||+||++.+||++|+++|++||+|++|+|+.+. ++| |||+|.+.++|++||+ +..+|.+ ++|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 568899999999999999999999999999887642 578 9999999999999999 5567777 88999998
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7653
No 350
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=7e-14 Score=126.10 Aligned_cols=84 Identities=18% Similarity=0.398 Sum_probs=74.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEc
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRA 185 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a 185 (456)
..+.++|||+|||.++|+++|+++|++|+.|.. .++.+..+++++|||||+|.++++|++||++++..|.+++|+|+++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 346799999999999999999999999998877 4556667788999999999999999999976669999999999999
Q ss_pred cCCCC
Q 035855 186 LPKDA 190 (456)
Q Consensus 186 ~~k~~ 190 (456)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 87654
No 351
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=1.9e-13 Score=117.45 Aligned_cols=74 Identities=18% Similarity=0.370 Sum_probs=66.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEec
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRA 80 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a 80 (456)
.+.++|||+|| ++|+++|+++|++||+|++|.|+ ++++||||+|.+.++|++||+ +..+|.++.|.|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35789999996 79999999999999999999996 467999999999999999997 566899999999999
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
.++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=4.8e-13 Score=112.22 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCc-----cCcHHHHHHHHhcCCCeeEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHH--cCCcCCCc
Q 035855 2 DSDQGKLFIGGISW-----ETSEERLREYFSQYGDVLQTVVMREKTT-GRPRGFGFVVFADPSILDRVLQ--DKHSLDGR 73 (456)
Q Consensus 2 e~~~r~LfVgnLP~-----~vtee~L~e~F~~~G~V~~v~i~~d~~t-g~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr 73 (456)
...+++|+|.||.. +.++++|+++|++||+|++|+|++++.+ ++++||+||+|.++++|++|++ +...|++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35679999999963 3479999999999999999999998754 6899999999999999999998 56689999
Q ss_pred eEEEEecchhH
Q 035855 74 TVEAKRAMSRE 84 (456)
Q Consensus 74 ~I~v~~a~~~~ 84 (456)
.|.|.++.+..
T Consensus 85 ~i~v~~a~~~~ 95 (105)
T 2pe8_A 85 VVKACFYNLDK 95 (105)
T ss_dssp ECEEEECCHHH
T ss_pred EEEEEEcCHHH
Confidence 99999997643
No 353
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=4.9e-13 Score=115.52 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=63.4
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceE-EEEEeCCHHHHHHHHH--cCCcCCC--ceEEEEec
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGF-GFVVFADPSILDRVLQ--DKHSLDG--RTVEAKRA 80 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGf-aFVeF~d~e~A~kAl~--~~~~l~G--r~I~v~~a 80 (456)
.+|||+|||+.+|+++|+++|++||+|++|+|+. + +|| |||+|.+.++|++||+ +..+|.+ ++|.|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 3478999999999999999999999999999975 2 286 9999999999999999 5567877 68999988
Q ss_pred chhH
Q 035855 81 MSRE 84 (456)
Q Consensus 81 ~~~~ 84 (456)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 354
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.41 E-value=4.1e-13 Score=127.35 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=71.3
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 107 IRTKKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 107 ~~~~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
.+.++|||+|||+ ++|+++|+++|++||.|++|+|++++ ++||||+|.++++|++||+.++ ..|++++|+|++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999875 6799999999999999998555 999999999999
Q ss_pred ccCCC
Q 035855 185 ALPKD 189 (456)
Q Consensus 185 a~~k~ 189 (456)
+.++.
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 98664
No 355
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.4e-12 Score=108.42 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCCCCCCC
Q 035855 119 PTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPKDANPG 193 (456)
Q Consensus 119 ~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k~~~~~ 193 (456)
.++|+++|+++|++||+|++|+|+ .++||||||+|+++++|++||+.+ ..+.+++|+|+|++++.....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~-~~~~g~~l~V~~a~~~~~~~~ 95 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE-VGLVDNPLKISWLEGQPQDAS 95 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC-CBCSSSBCEEECSSCCCCCCS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc-CCCCCCeEEEEEccCCCCCCC
Confidence 468999999999999999999998 367899999999999999999984 667899999999998765443
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=4.5e-13 Score=128.32 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=66.7
Q ss_pred CCCCcEEEEcCCCccC---------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcC
Q 035855 2 DSDQGKLFIGGISWET---------SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSL 70 (456)
Q Consensus 2 e~~~r~LfVgnLP~~v---------tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l 70 (456)
+.+.++|||+|||+++ +|++|+++|++||+|++|+|+. +||||||+|.+.++|++||+ +...|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3567999999999998 7999999999999999999986 36999999999999999998 44466
Q ss_pred ------------CCceEEEEecchhHHH
Q 035855 71 ------------DGRTVEAKRAMSREEQ 86 (456)
Q Consensus 71 ------------~Gr~I~v~~a~~~~~~ 86 (456)
.++.|.|+|+......
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eccccccccccCCCCEEEEEEccCCCCH
Confidence 7899999999865543
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=3.2e-13 Score=129.33 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=67.7
Q ss_pred ccccEEEEcCCCCCC---------CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc-
Q 035855 107 IRTKKIFVGGLPPTL---------TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL- 175 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~---------teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l- 175 (456)
...++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|+++++|++|++.++ ..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 79999999999999999999853 7899999999999999998777 788
Q ss_pred -----------CCcEEEEEEccCCCC
Q 035855 176 -----------NGKQVEVKRALPKDA 190 (456)
Q Consensus 176 -----------~Gr~I~V~~a~~k~~ 190 (456)
+++.|.|+||+.++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 358
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=109.06 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCccCcHHH----HHHHHhcC-CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceE
Q 035855 3 SDQGKLFIGGISWETSEER----LREYFSQY-GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~----L~e~F~~~-G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I 75 (456)
+.++.|||.|||+++++++ |+++|++| |+|++| ++ |||||+|.+.++|++|++ +..+|.+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444599999999999998 55899999 599888 22 999999999999999998 5668999999
Q ss_pred EEEecchhH
Q 035855 76 EAKRAMSRE 84 (456)
Q Consensus 76 ~v~~a~~~~ 84 (456)
+|.+++.+.
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999997654
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=5e-13 Score=112.05 Aligned_cols=81 Identities=19% Similarity=0.216 Sum_probs=69.9
Q ss_pred ccccEEEEcCC--CCCCC--------HHHHHHHHHhcCceeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHHHcC-C
Q 035855 107 IRTKKIFVGGL--PPTLT--------EDGFRQYFEAYGHVTDVVIMYDQNT--QRPRGFGFISFDTEDAVDRVLQKTF-H 173 (456)
Q Consensus 107 ~~~~~LfV~nL--p~~~t--------eedL~~~F~~fG~V~~v~i~~d~~t--g~~rGfAFV~F~s~eaa~aal~~~~-~ 173 (456)
.++++|+|.|| |.++. ++||+++|++||.|++|+|++++.+ .+++|||||+|+++++|++|++.++ +
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47889999998 33443 4799999999999999999998865 4689999999999999999998777 9
Q ss_pred ccCCcEEEEEEccC
Q 035855 174 DLNGKQVEVKRALP 187 (456)
Q Consensus 174 ~l~Gr~I~V~~a~~ 187 (456)
.|++|+|+|++..+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998754
No 360
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.38 E-value=4.7e-13 Score=123.36 Aligned_cols=77 Identities=18% Similarity=0.406 Sum_probs=70.1
Q ss_pred cccEEEEcCCCC-CCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEc
Q 035855 108 RTKKIFVGGLPP-TLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRA 185 (456)
Q Consensus 108 ~~~~LfV~nLp~-~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a 185 (456)
..++|||+|||+ ++|+++|+++|++||.|++|+|++++ ++||||+|+++++|++||+.++ ..|++++|+|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999999875 6799999999999999998555 9999999999999
Q ss_pred cCCC
Q 035855 186 LPKD 189 (456)
Q Consensus 186 ~~k~ 189 (456)
.++.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8764
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-12 Score=107.18 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCCcEEEEcCCC-------ccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceE
Q 035855 3 SDQGKLFIGGIS-------WETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP-------~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I 75 (456)
+...+|.|.-.. .++||++|+++|++||+|++|+|+ +++||||||+|+++++|++||+..+.+.++.|
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l 82 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVGLVDNPL 82 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBC
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeE
Confidence 456778887665 358999999999999999999998 36789999999999999999998888999999
Q ss_pred EEEecchh
Q 035855 76 EAKRAMSR 83 (456)
Q Consensus 76 ~v~~a~~~ 83 (456)
.|+++.++
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998654
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=2.3e-12 Score=110.34 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=69.3
Q ss_pred cccEEEEcCCCC-----CCCHHHHHHHHHhcCceeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHcC-CccCC
Q 035855 108 RTKKIFVGGLPP-----TLTEDGFRQYFEAYGHVTDVVIMYDQN----TQRPRGFGFISFDTEDAVDRVLQKTF-HDLNG 177 (456)
Q Consensus 108 ~~~~LfV~nLp~-----~~teedL~~~F~~fG~V~~v~i~~d~~----tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~G 177 (456)
++++|+|.||-. +-.++||+++|++||+|++|+|++++. +.+++||+||+|+++++|++|++.++ ..|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999942 224789999999999999999999875 45778999999999999999998877 99999
Q ss_pred cEEEEEEccC
Q 035855 178 KQVEVKRALP 187 (456)
Q Consensus 178 r~I~V~~a~~ 187 (456)
|+|.|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.32 E-value=5e-12 Score=122.28 Aligned_cols=76 Identities=30% Similarity=0.579 Sum_probs=69.0
Q ss_pred cccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEE
Q 035855 106 TIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKR 184 (456)
Q Consensus 106 ~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~ 184 (456)
..+.++|||+|||+++|+++|+++|++||.|++|+|+++ +|||||+|.++++|++||+.++ +.|.++.|.|++
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 356789999999999999999999999999999999644 6799999999999999998665 999999999999
Q ss_pred ccC
Q 035855 185 ALP 187 (456)
Q Consensus 185 a~~ 187 (456)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.30 E-value=1.1e-12 Score=109.76 Aligned_cols=71 Identities=15% Similarity=0.364 Sum_probs=60.6
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEE
Q 035855 114 VGGLPPTLTEDGFRQYF------------EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQV 180 (456)
Q Consensus 114 V~nLp~~~teedL~~~F------------~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I 180 (456)
+.+|++++++++|+++| ++||+|++|+|++++. ++++|||||+|+++++|++|++.++ +.|++|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666555 9999999999998875 6899999999999999999998766 99999999
Q ss_pred EEEEc
Q 035855 181 EVKRA 185 (456)
Q Consensus 181 ~V~~a 185 (456)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 365
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.9e-12 Score=106.83 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=65.0
Q ss_pred CCCcEEEEcCCCccC-----------cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCc
Q 035855 3 SDQGKLFIGGISWET-----------SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHS 69 (456)
Q Consensus 3 ~~~r~LfVgnLP~~v-----------tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~ 69 (456)
..+++|+|.||.... ++++|+++|++||+|++|+| .++ .++|||||+|.++++|++||+ +...
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 457899999994432 26899999999999999966 443 379999999999999999998 4557
Q ss_pred CCCceEEEEecchhH
Q 035855 70 LDGRTVEAKRAMSRE 84 (456)
Q Consensus 70 l~Gr~I~v~~a~~~~ 84 (456)
|++++|.|+++.++.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987643
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.25 E-value=3.9e-12 Score=106.41 Aligned_cols=70 Identities=17% Similarity=0.315 Sum_probs=60.8
Q ss_pred EcCCCccCcHHHHHHHH------------hcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceE
Q 035855 10 IGGISWETSEERLREYF------------SQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTV 75 (456)
Q Consensus 10 VgnLP~~vtee~L~e~F------------~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I 75 (456)
+.+||+++++++|+++| ++||+|++|+|++++ +++++|||||+|.++++|++|++ +...+++|+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677788888887777 999999999999876 47899999999999999999998 5668999999
Q ss_pred EEEec
Q 035855 76 EAKRA 80 (456)
Q Consensus 76 ~v~~a 80 (456)
.|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.24 E-value=1.5e-11 Score=102.93 Aligned_cols=83 Identities=20% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCCcEEEEcCC--CccCc--------HHHHHHHHhcCCCeeEEEEeecCCC--CCcceEEEEEeCCHHHHHHHHH--cCC
Q 035855 3 SDQGKLFIGGI--SWETS--------EERLREYFSQYGDVLQTVVMREKTT--GRPRGFGFVVFADPSILDRVLQ--DKH 68 (456)
Q Consensus 3 ~~~r~LfVgnL--P~~vt--------ee~L~e~F~~~G~V~~v~i~~d~~t--g~srGfaFVeF~d~e~A~kAl~--~~~ 68 (456)
..++.|.|.|| |.++. +++|+++|++||+|++|+|++++.+ .+++||+||+|.++++|++|++ +..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45788999998 44443 4799999999999999999998754 4789999999999999999998 566
Q ss_pred cCCCceEEEEecchhHH
Q 035855 69 SLDGRTVEAKRAMSREE 85 (456)
Q Consensus 69 ~l~Gr~I~v~~a~~~~~ 85 (456)
.+++|.|.|.+..+..-
T Consensus 83 ~f~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDSY 99 (105)
T ss_dssp EETTEECEEEEECHHHH
T ss_pred EeCCCEEEEEEeCHHHH
Confidence 89999999999876543
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.20 E-value=3.6e-11 Score=102.85 Aligned_cols=80 Identities=19% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCcEEEEcCCC--cc---CcHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHH--cCCcCCC
Q 035855 4 DQGKLFIGGIS--WE---TSEERLREYFSQYGDVLQTVVMREKT----TGRPRGFGFVVFADPSILDRVLQ--DKHSLDG 72 (456)
Q Consensus 4 ~~r~LfVgnLP--~~---vtee~L~e~F~~~G~V~~v~i~~d~~----tg~srGfaFVeF~d~e~A~kAl~--~~~~l~G 72 (456)
.+++|+|.||- .+ -.+++|++.|++||+|++|+|++++. +.+++||+||+|.++++|++|++ +..++++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999994 22 24799999999999999999999865 45788999999999999999999 5668999
Q ss_pred ceEEEEecchh
Q 035855 73 RTVEAKRAMSR 83 (456)
Q Consensus 73 r~I~v~~a~~~ 83 (456)
|.|.|.+....
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998654
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=5.9e-11 Score=100.92 Aligned_cols=76 Identities=11% Similarity=0.100 Sum_probs=64.4
Q ss_pred ccccEEEEcCCCCCC----------CHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc
Q 035855 107 IRTKKIFVGGLPPTL----------TEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL 175 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~----------teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l 175 (456)
.++++|.|.||=... .++||+++|++||.|++|.|+++. ++||+||+|+++++|++|++.++ ..|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578899999984322 236889999999999999997653 58999999999999999998777 999
Q ss_pred CCcEEEEEEcc
Q 035855 176 NGKQVEVKRAL 186 (456)
Q Consensus 176 ~Gr~I~V~~a~ 186 (456)
+||+|.|+++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999975
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.13 E-value=9.3e-11 Score=117.96 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=61.9
Q ss_pred cccccEEEEcC--CCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-Ccc---CCc-
Q 035855 106 TIRTKKIFVGG--LPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDL---NGK- 178 (456)
Q Consensus 106 ~~~~~~LfV~n--Lp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l---~Gr- 178 (456)
..++++|||.| |+..+||++|+++|++||+|++|+|.. .|+||||+|+++++|++||+.++ +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45789999999 588999999999999999999987753 47899999999999999999887 666 244
Q ss_pred -EEEEEEc
Q 035855 179 -QVEVKRA 185 (456)
Q Consensus 179 -~I~V~~a 185 (456)
.|.|.++
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4666655
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=1.7e-10 Score=116.07 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCCCcEEEEcC--CCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cC---CCc-
Q 035855 2 DSDQGKLFIGG--ISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SL---DGR- 73 (456)
Q Consensus 2 e~~~r~LfVgn--LP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l---~Gr- 73 (456)
+...++|||+| |++++||++|+++|++||+|++|+|.. .|+||||+|.+.++|++||+.++ ++ .++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35578999999 589999999999999999998877643 46999999999999999999443 22 345
Q ss_pred -eEEEEec
Q 035855 74 -TVEAKRA 80 (456)
Q Consensus 74 -~I~v~~a 80 (456)
.|.+..+
T Consensus 89 ~~ly~~~~ 96 (345)
T 3tht_A 89 ITLYLNFV 96 (345)
T ss_dssp EECEEEEC
T ss_pred eEEEEEEe
Confidence 4555555
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=3.7e-10 Score=96.70 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=66.9
Q ss_pred CCcccccEEEEcCCCCC-CCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHcC---CccCCc
Q 035855 104 GGTIRTKKIFVGGLPPT-LTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT-EDAVDRVLQKTF---HDLNGK 178 (456)
Q Consensus 104 ~~~~~~~~LfV~nLp~~-~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s-~eaa~aal~~~~---~~l~Gr 178 (456)
....+...|+|.||+.+ +++++|+++|++||+|+.|+|+++.. +|||+|++ +++|++|++.++ .+|++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567889999999999 99999999999999999999998876 59999999 777887777763 789999
Q ss_pred EEEEEEcc
Q 035855 179 QVEVKRAL 186 (456)
Q Consensus 179 ~I~V~~a~ 186 (456)
.++|+...
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 99987654
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.5e-10 Score=89.52 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=61.3
Q ss_pred cccEEEEcCCCC----CCCH----HHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcE
Q 035855 108 RTKKIFVGGLPP----TLTE----DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQ 179 (456)
Q Consensus 108 ~~~~LfV~nLp~----~~te----edL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~ 179 (456)
+.-+|+|.-++. +..+ .+|++.|++||+|..|+|+.|+ +||+|++.++|.+||+++..+|.+|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 556777776662 2333 6799999999999999999874 89999999999999996669999999
Q ss_pred EEEEEccCC
Q 035855 180 VEVKRALPK 188 (456)
Q Consensus 180 I~V~~a~~k 188 (456)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999864
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=2.8e-09 Score=90.53 Aligned_cols=81 Identities=10% Similarity=0.092 Sum_probs=65.7
Q ss_pred CCcEEEEcCCCcc----------CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCC
Q 035855 4 DQGKLFIGGISWE----------TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLD 71 (456)
Q Consensus 4 ~~r~LfVgnLP~~----------vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~ 71 (456)
.++.|.|.||=.. ..+++|+++|++||+|++|+|+++. .+||+||+|.+.++|++|++ +..+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4677888887321 2356889999999999999997653 58999999999999999998 566899
Q ss_pred CceEEEEecchhHHHhh
Q 035855 72 GRTVEAKRAMSREEQQF 88 (456)
Q Consensus 72 Gr~I~v~~a~~~~~~~~ 88 (456)
+|.|.|.++....-...
T Consensus 82 GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHNL 98 (114)
T ss_dssp TEECEEEEECHHHHHHH
T ss_pred CEEEEEEEEcHHHHHHh
Confidence 99999999876554443
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=2.9e-09 Score=91.17 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=65.8
Q ss_pred CCcEEEEcCCCcc-CcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHc----CCcCCCceEEE
Q 035855 4 DQGKLFIGGISWE-TSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD-PSILDRVLQD----KHSLDGRTVEA 77 (456)
Q Consensus 4 ~~r~LfVgnLP~~-vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d-~e~A~kAl~~----~~~l~Gr~I~v 77 (456)
..+.|||+||+++ +++++|+++|++|++|..|.++++.. .|||+|.+ +++|++|++. ..+|.+..+.+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4578999999999 99999999999999999999999875 59999999 8899999884 44788888888
Q ss_pred EecchhHHH
Q 035855 78 KRAMSREEQ 86 (456)
Q Consensus 78 ~~a~~~~~~ 86 (456)
+...-.+++
T Consensus 91 evL~GeeE~ 99 (121)
T 1owx_A 91 EVLEGEVEK 99 (121)
T ss_dssp EECCHHHHH
T ss_pred EECCCHHHH
Confidence 776555544
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.5e-09 Score=86.03 Aligned_cols=73 Identities=19% Similarity=0.212 Sum_probs=61.3
Q ss_pred ccccEEEEcCCCCC-----CCH----HHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCC
Q 035855 107 IRTKKIFVGGLPPT-----LTE----DGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG 177 (456)
Q Consensus 107 ~~~~~LfV~nLp~~-----~te----edL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~G 177 (456)
++..+|+|.-++.+ ..+ .+|.+.|++||+|+.|+|+.|+ +||+|.+.++|.+||+++..+|++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 46678888887643 222 5689999999999999999874 999999999999999966699999
Q ss_pred cEEEEEEccC
Q 035855 178 KQVEVKRALP 187 (456)
Q Consensus 178 r~I~V~~a~~ 187 (456)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998754
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=1.2e-07 Score=88.97 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHhcCceeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 120 TLTEDGFRQYFEAYGHVTDVVIMYDQN----TQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 120 ~~teedL~~~F~~fG~V~~v~i~~d~~----tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
+-.+++|+++|++||+|++|.|+++.. +.+++|++||+|+++++|++|++.++ ..|+||+|.|.+..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 345789999999999999999986654 44899999999999999999998777 99999999999865
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=2.5e-08 Score=80.59 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=61.7
Q ss_pred CCCCcEEEEcCCC----ccCcH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCC
Q 035855 2 DSDQGKLFIGGIS----WETSE----ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDG 72 (456)
Q Consensus 2 e~~~r~LfVgnLP----~~vte----e~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~G 72 (456)
-+.+-||+|.-+| .+..+ .+|++.|++||+|+.++|+.++ +||+|.+.++|.+||+ +..++.+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCC
Confidence 4567899998877 23334 6799999999999999999875 8999999999999999 5668999
Q ss_pred ceEEEEecch
Q 035855 73 RTVEAKRAMS 82 (456)
Q Consensus 73 r~I~v~~a~~ 82 (456)
|.|+|+.+.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999988764
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-07 Score=76.23 Aligned_cols=88 Identities=27% Similarity=0.443 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc-CCcCCCceEE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY-----GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD-KHSLDGRTVE 76 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~-----G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~-~~~l~Gr~I~ 76 (456)
+..++|.|.|||+++++|.|+-+|++- |+|+.+.... .-|+|+|.+.++|+++|+. .|.|.+..|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 346899999999999999999999973 6787777654 3689999999999999996 9999999999
Q ss_pred EEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCC
Q 035855 77 AKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLT 122 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~t 122 (456)
|....++ ...+|++.+|++.++
T Consensus 78 V~P~~~~------------------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR------------------------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC------------------------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC------------------------CcceEeeecCCCCCC
Confidence 9775332 446788899988775
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=5.2e-08 Score=79.14 Aligned_cols=73 Identities=19% Similarity=0.227 Sum_probs=61.1
Q ss_pred CCCCCcEEEEcCCCcc-----CcH----HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcC
Q 035855 1 MDSDQGKLFIGGISWE-----TSE----ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSL 70 (456)
Q Consensus 1 me~~~r~LfVgnLP~~-----vte----e~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l 70 (456)
|-+.+-||+|.-++.+ ..+ .+|++.|++||+|+.++|+.++ +||+|.+.++|.+||+ +..++
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeee
Confidence 3467789999988732 323 5689999999999999999875 9999999999999999 66789
Q ss_pred CCceEEEEecc
Q 035855 71 DGRTVEAKRAM 81 (456)
Q Consensus 71 ~Gr~I~v~~a~ 81 (456)
.+|.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999997653
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.46 E-value=4.2e-07 Score=85.29 Aligned_cols=69 Identities=22% Similarity=0.244 Sum_probs=59.8
Q ss_pred cCcHHHHHHHHhcCCCeeEEEEeecCC----CCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceEEEEecchhH
Q 035855 16 ETSEERLREYFSQYGDVLQTVVMREKT----TGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTVEAKRAMSRE 84 (456)
Q Consensus 16 ~vtee~L~e~F~~~G~V~~v~i~~d~~----tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I~v~~a~~~~ 84 (456)
+-.+++|++.|++||+|++++|+++.. +++++|++||+|.+.++|++||+ +...+.+|.|.+.......
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 346789999999999999999996654 45899999999999999999999 5668999999999986543
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=5.7e-06 Score=67.98 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=65.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhc-----CceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAY-----GHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~f-----G~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V 182 (456)
-.++|.|.|||+++.+|.|+-+|++- |+|+.|+... . -|+|+|.+.++++++|++..+.|++.+|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~------~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C------GGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T------EEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C------cEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 45899999999999999999999882 5888888864 2 699999999999999999889999999999
Q ss_pred EEccCCCC
Q 035855 183 KRALPKDA 190 (456)
Q Consensus 183 ~~a~~k~~ 190 (456)
....+++.
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 88766654
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=4.2e-06 Score=69.45 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=61.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhc-----CceeEEEEeecCCCCCcceEEEEEeCCHH-HHHHHHHHcCCccCCcEEE
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAY-----GHVTDVVIMYDQNTQRPRGFGFISFDTED-AVDRVLQKTFHDLNGKQVE 181 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~f-----G~V~~v~i~~d~~tg~~rGfAFV~F~s~e-aa~aal~~~~~~l~Gr~I~ 181 (456)
..++|-|-+||..++++.|+.+++++ +.|+.|.+..|.. =|+|+|+++. +++++|.+.+.+|++++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 9999999998876 4999999955 5555667777999999999
Q ss_pred EE
Q 035855 182 VK 183 (456)
Q Consensus 182 V~ 183 (456)
|-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.3e-05 Score=66.61 Aligned_cols=74 Identities=9% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCcEEEEcCCCccCcHHHHHHHHhcC-----CCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH--cCCcCCCceE
Q 035855 3 SDQGKLFIGGISWETSEERLREYFSQY-----GDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ--DKHSLDGRTV 75 (456)
Q Consensus 3 ~~~r~LfVgnLP~~vtee~L~e~F~~~-----G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~--~~~~l~Gr~I 75 (456)
.+.++|-|-+||..|+++.|++|++++ +.++++.++.|. +=|+|+|+|..+|-||.- +..+|++++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 357999999999999999999999999 999999999886 479999999999998875 7789999999
Q ss_pred EEEecch
Q 035855 76 EAKRAMS 82 (456)
Q Consensus 76 ~v~~a~~ 82 (456)
.|-...+
T Consensus 93 r~gTv~e 99 (117)
T 2l9w_A 93 RSGTIND 99 (117)
T ss_dssp EEECHHH
T ss_pred EecCHHH
Confidence 9866544
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.36 E-value=0.0004 Score=56.41 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=43.8
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
++.|+| .+|+++..+||.++|+.|+-| .|+.+.|. .|||.|.+++.|..||+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 344555 999999999999999999955 55555553 899999999999999984
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00033 Score=57.68 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=59.8
Q ss_pred ccEEEEcCCCCCC-C----HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEE
Q 035855 109 TKKIFVGGLPPTL-T----EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEV 182 (456)
Q Consensus 109 ~~~LfV~nLp~~~-t----eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V 182 (456)
.++|+|.||+.++ + .+.|+++|.+|.++.....++.-. -..|.|.++++|.+|..+++ ..|.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4679999998766 2 257789999999988888775433 48999999888888877776 8899999999
Q ss_pred EEccCC
Q 035855 183 KRALPK 188 (456)
Q Consensus 183 ~~a~~k 188 (456)
-++.+-
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998743
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.06 E-value=0.00082 Score=54.58 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=44.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
..+.++| .+|++....||.++|+.||-|. |+-+-| | .|||.|.+++.|..||..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 4566777 9999999999999999999543 444433 3 6999999999999998865
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.04 E-value=0.0021 Score=54.32 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=59.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCC-cEEEEEEc
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNG-KQVEVKRA 185 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~G-r~I~V~~a 185 (456)
...+-|.|-+.|++. .+.|.++|++||+|++...... ..+..|.|+++.+|++||.++...|++ ..|-|++.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 456789999999884 6778888999999998887221 239999999999999999999988874 77777774
Q ss_pred c
Q 035855 186 L 186 (456)
Q Consensus 186 ~ 186 (456)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.87 E-value=0.0022 Score=51.71 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=51.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHcC-Ccc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQR--PRGFGFISFDTEDAVDRVLQKTF-HDL 175 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~--~rGfAFV~F~s~eaa~aal~~~~-~~l 175 (456)
++|.|++||+.+||+++.+.+....++.....+.-+.+.+ .-.-|+|.|.+.|++....+..+ +.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999888777666655443322 23469999999888888887766 444
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.83 E-value=0.002 Score=51.91 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=48.2
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGR--PRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~--srGfaFVeF~d~e~A~kAl~ 65 (456)
+||-|.+||+.+|||++.+.+....++.....+.-+.+.+ .-.-|+|.|.+.+++....+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999988776666655443222 22569999999999988887
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.83 E-value=0.00094 Score=54.39 Aligned_cols=52 Identities=19% Similarity=0.345 Sum_probs=42.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
+.|+| .+|+++...+|.++|+.||.| .|..+.|. .|||.|.+++.|..||..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 34555 999999999999999999833 55555543 899999999999999983
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.74 E-value=0.0057 Score=51.63 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-cCCcCCC-ceEEEEecc
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ-DKHSLDG-RTVEAKRAM 81 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~-~~~~l~G-r~I~v~~a~ 81 (456)
+++-|.|-++|++. .+.|.++|++||+|++..... ..-+..|.|.++.+|++||+ +...|.+ -.|-|++..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 46789999999886 557888999999999887621 23488999999999999999 4555654 567777765
Q ss_pred hhHH
Q 035855 82 SREE 85 (456)
Q Consensus 82 ~~~~ 85 (456)
.+..
T Consensus 96 d~~v 99 (119)
T 1wwh_A 96 DKNV 99 (119)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 4433
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.68 E-value=0.0013 Score=53.51 Aligned_cols=55 Identities=18% Similarity=0.406 Sum_probs=43.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
..+.|+| .+|++....||.++|+.||-| .|+-+- +| .|||.|.+++.|+.||..+
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid--DT-----sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DT-----SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE--TT-----EEEEEEEEECHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc--CC-----eEEEEecCHHHHHHHHHhc
Confidence 4466777 999999999999999999833 244333 34 6999999998888888865
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.59 E-value=0.0033 Score=51.77 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=58.7
Q ss_pred CcEEEEcCCCccC-c----HHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCC--cCCCceEEE
Q 035855 5 QGKLFIGGISWET-S----EERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKH--SLDGRTVEA 77 (456)
Q Consensus 5 ~r~LfVgnLP~~v-t----ee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~--~l~Gr~I~v 77 (456)
.++|+|.||+.+| + .++|+++|..|.++.....++.- .-..|.|.++++|.+|....| .+.++.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999999876 2 36789999999999888877653 256899999999999988554 689999999
Q ss_pred Eecc
Q 035855 78 KRAM 81 (456)
Q Consensus 78 ~~a~ 81 (456)
-.+.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 8886
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.55 E-value=0.0025 Score=54.59 Aligned_cols=87 Identities=9% Similarity=0.229 Sum_probs=60.6
Q ss_pred CCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeec---------CCCC-----CcceEEEEEeCCHHHHHHHHH-c
Q 035855 2 DSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMRE---------KTTG-----RPRGFGFVVFADPSILDRVLQ-D 66 (456)
Q Consensus 2 e~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d---------~~tg-----~srGfaFVeF~d~e~A~kAl~-~ 66 (456)
+..+.-|.|=+.|++.+. .|.+.|++||.|++..-+.+ ++.. ....+.-|+|+++.+|++||+ +
T Consensus 4 ~~~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 4 SNGELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp ----CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred ccCceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 445678899999866655 77788999999987332211 0001 124577999999999999998 6
Q ss_pred CCcCCCceEEEEecchhHHHhhh
Q 035855 67 KHSLDGRTVEAKRAMSREEQQFS 89 (456)
Q Consensus 67 ~~~l~Gr~I~v~~a~~~~~~~~~ 89 (456)
...|.+..|-|++..+...++..
T Consensus 83 G~ii~G~mIGV~Py~~~~ve~l~ 105 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTKDAVERLQ 105 (132)
T ss_dssp TCEETTEECEEEECCHHHHHHHC
T ss_pred CeEeCcEEEEEEECCHHHHHHHh
Confidence 77889999999988766655554
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.20 E-value=0.0023 Score=66.35 Aligned_cols=59 Identities=12% Similarity=0.393 Sum_probs=44.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
..+.|+|. +|.++++.+|.++|++||.|.++.+.+++. -||.|||++++++++++....
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhccC
Confidence 34789998 899999999999999999999999986643 399999999999998876543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0021 Score=66.74 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..|.|||. .|.++++.+|.++|++||+|.++.+-+++. -|+.|||.+++++.++++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 35899997 899999999999999999999988876543 599999999999998886
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.83 E-value=0.0094 Score=48.44 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=46.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHHHcC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQR--PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~--~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
..+.+|.|+.||+.+||+++.+.+...=++.....+.-+.+.+ .-.-|+|.|.+.|++....+..+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 3567899999999999999998887654443333322222211 11359999999999999888776
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.22 E-value=0.019 Score=49.22 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=55.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeE-EEEeec--------CCCC-----CcceEEEEEeCCHHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTD-VVIMYD--------QNTQ-----RPRGFGFISFDTEDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~-v~i~~d--------~~tg-----~~rGfAFV~F~s~eaa~aal~~~~~ 173 (456)
...-|.|-+.|++. ...+.++|++||.|.+ +.+.++ +... .......|+|+++.+|++||.++..
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 34568888897664 4567778999999876 222110 0001 1245889999999999999999999
Q ss_pred ccCCcEEEEEEcc
Q 035855 174 DLNGKQVEVKRAL 186 (456)
Q Consensus 174 ~l~Gr~I~V~~a~ 186 (456)
.|++..|-|++..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999998887754
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.20 E-value=0.015 Score=47.30 Aligned_cols=61 Identities=10% Similarity=0.018 Sum_probs=43.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCC--cceEEEEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGR--PRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~--srGfaFVeF~d~e~A~kAl~ 65 (456)
+-||.|..||+.+||+++.+.+..+-++.....+.-+.+.+ .---|+|.|.+.+++....+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 56899999999999999999988765543322222121111 11358999999999998887
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.39 E-value=1.2 Score=46.64 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=42.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
+..|+|+ +|+.+...+|.++|+.|+.| +|+.+.+. .|||.|.+++.|+.+|+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 3455665 99999999999999999964 55554442 799999999999999984
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.30 E-value=1.6 Score=45.75 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=44.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.+...++|+ +|..+...+|+++|+.|+.| +|+.+-| | .|||.|.+.++|..+++...
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 345677777 88899999999999999953 4444332 2 69999999999999887764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=81.99 E-value=9.4 Score=30.21 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=44.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHc
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKT 171 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~ 171 (456)
..+.|.|-|+|..+-..++.-.....|.--.|..+ .|.|.|.|.+.+...-|++++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 45778999999999999988888888877677765 236999999877776666654
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=79.30 E-value=13 Score=29.46 Aligned_cols=67 Identities=10% Similarity=0.071 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEE
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAK 78 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~ 78 (456)
.+|-|-|-|||..+-..++.-.....|----|..+. |.|.|.|.+.++.+.|++........+|.++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 467889999999999999999999888766676654 5799999999999999985544445555553
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.33 E-value=7.5 Score=29.12 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHhcC-----ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcEEEEEEcc
Q 035855 119 PTLTEDGFRQYFEAYG-----HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQVEVKRAL 186 (456)
Q Consensus 119 ~~~teedL~~~F~~fG-----~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~I~V~~a~ 186 (456)
..++..+|..++.+-+ .|-.|+|..+ |.||+-....+ +.+++.+. ..+++++|.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~~-~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGKG-PHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTCH-HHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHHH-HHHHHHhccccCcCceEEEEECC
Confidence 4466777887777554 3555666433 78999876543 34444444 78899999988764
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=71.66 E-value=14 Score=26.75 Aligned_cols=60 Identities=7% Similarity=-0.034 Sum_probs=46.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Q 035855 107 IRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFH 173 (456)
Q Consensus 107 ~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~ 173 (456)
....+|.|.++.=.--...|++.+.+ --|..+.+-.. ...+.|+|++.+.+.++|+....
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~Gy 63 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAGY 63 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcCC
Confidence 34577999999888888999999999 77888887433 23688998877778888887653
No 407
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=65.18 E-value=8.5 Score=31.02 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccCC
Q 035855 117 LPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALPK 188 (456)
Q Consensus 117 Lp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~k 188 (456)
++..++-+||+.-. +.||.-.++..+ +.+ ..|-..+.+++++|+++++....-+.|+|-...++
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~E-------llIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT-NNE-------LVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC-SSS-------SCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe-cce-------EEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 56778888877655 568887777776 322 67899999999999999884444444555444444
No 408
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=64.36 E-value=34 Score=27.94 Aligned_cols=135 Identities=13% Similarity=0.195 Sum_probs=82.8
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHcCCcCCCceEE
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD----PSILDRVLQDKHSLDGRTVE 76 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d----~e~A~kAl~~~~~l~Gr~I~ 76 (456)
|.-...+|.|.++.=.--...|+..+++...|..+.+-... .-+.|+|.. .+...+++++. +..+.
T Consensus 1 ~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~----G~~~~ 70 (149)
T 2ew9_A 1 MAPQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMA------GKAEIKYDPEVIQPLEIAQFIQDL----GFEAA 70 (149)
T ss_dssp CCCEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH----TCEEE
T ss_pred CCcEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecC------CEEEEEEcCCCCCHHHHHHHHhcC----CCceE
Confidence 34445678888887666677888999887777666654322 246677743 33444444421 11121
Q ss_pred EEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEE
Q 035855 77 AKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV 156 (456)
+.... . ......+|.|.++.-......|++.+.+.--|..+.+-.... .+.|
T Consensus 71 ~~~~~-----------~-----------~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~------~~~v 122 (149)
T 2ew9_A 71 VMEDY-----------A-----------GSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATS------KALV 122 (149)
T ss_dssp ECSCS-----------C-----------CSSSEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTT------EEEE
T ss_pred eeccc-----------c-----------cccceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCC------EEEE
Confidence 10000 0 001345688988877666788999998887788888754432 6889
Q ss_pred EeC----CHHHHHHHHHHcCC
Q 035855 157 SFD----TEDAVDRVLQKTFH 173 (456)
Q Consensus 157 ~F~----s~eaa~aal~~~~~ 173 (456)
+|+ +.+++.++|+..+.
T Consensus 123 ~~~~~~~~~~~i~~~i~~~Gy 143 (149)
T 2ew9_A 123 KFDPEIIGPRDIIKIIEEIGF 143 (149)
T ss_dssp ECCTTTSCHHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhCCC
Confidence 996 35677777777653
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=57.62 E-value=17 Score=32.22 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=41.1
Q ss_pred cEEEEcCCCCC---------CCHHHHHHHH--HhcCceeEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHHHcC
Q 035855 110 KKIFVGGLPPT---------LTEDGFRQYF--EAYGHVTDVVIMYDQNTQRPRGFGFISFDT-EDAVDRVLQKTF 172 (456)
Q Consensus 110 ~~LfV~nLp~~---------~teedL~~~F--~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s-~eaa~aal~~~~ 172 (456)
-++.|-|+|.+ ...++|++.| ..|..++ |+.+..+. -.+|+|.|+|.+ -.-...|+...+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~fek 84 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLFDK 84 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHHHH
Confidence 35677788762 2347899977 8898866 66655543 467899999965 566666665543
No 410
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=55.66 E-value=34 Score=24.36 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=44.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHcCCc
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD----TEDAVDRVLQKTFHD 174 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~----s~eaa~aal~~~~~~ 174 (456)
..+|.|.++.-.--...|++.+.+.--|..+.+-.... .+.|+|+ +.+++.++|+....+
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQN------RADVVFDPNLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGT------EEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCC------EEEEEECCCCCCHHHHHHHHHHCCCc
Confidence 45688888877667788999999887788888755433 5889995 467788888877643
No 411
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=54.18 E-value=14 Score=28.23 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=39.5
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCCce---EEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHH
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDGRT---VEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~Gr~---I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teed 125 (456)
|.++.|....++.+-|+....++..- +.|+...++ .-.++|| |.++++|++
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r------------------------~YE~m~I--l~P~l~ee~ 60 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPG------------------------RYEVNIV--LNPNLDQSQ 60 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTT------------------------EEEEEEE--ECTTCCHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCC------------------------ceEEEEE--ECCCCCHHH
Confidence 78899987766777776555555543 444322211 2245777 678899999
Q ss_pred HHHHHHhcCc
Q 035855 126 FRQYFEAYGH 135 (456)
Q Consensus 126 L~~~F~~fG~ 135 (456)
+++++++|-.
T Consensus 61 ~~~~vek~~~ 70 (77)
T 3zzp_A 61 LQNEKEIIQR 70 (77)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887743
No 412
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=51.07 E-value=49 Score=23.03 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=43.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHcCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD---TEDAVDRVLQKTFH 173 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~---s~eaa~aal~~~~~ 173 (456)
+.+|.|.++.-..-...|++.+.+.--|..+.+-.... .+.|+|+ +.+.+.++++....
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~i~~~i~~~Gy 64 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALE------QAVVSYHGETTPQILTDAVERAGY 64 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEECTTCCHHHHHHHHHHTTC
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCC------EEEEEECCCCCHHHHHHHHHHcCC
Confidence 35688888877767788999999887788888754433 5888884 36677777776653
No 413
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=49.01 E-value=36 Score=27.10 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEE
Q 035855 116 GLPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEV 182 (456)
Q Consensus 116 nLp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V 182 (456)
-++..+.-+||+... ..||.-.++..+.+ .-.|-..+.+++++|++.++....-+.|+|
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrI 94 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKI 94 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEE
Confidence 356778888888766 56898888888743 267888999999999999884444444443
No 414
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=46.41 E-value=57 Score=22.37 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=40.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
..+|.|.++.-......|++.+.+.--|..+.+-... +.+.|+|+. .+.+.++|+....
T Consensus 6 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G~ 68 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE------GTVEVTIDSSVVTLKDIVAVIEDQGY 68 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTSCHHHHHHHHHHTTC
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 4568888886655667788888887778877775432 258888853 5666777776653
No 415
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=46.15 E-value=64 Score=21.99 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=39.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT---EDAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s---~eaa~aal~~~~ 172 (456)
..+|.|.++.-......|++.+.+.-.|..+.+-.... .+.|+|+. .+.+.++++...
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~i~~~i~~~G 64 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALE------QAVVSYHGETTPQILTDAVERAG 64 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTT------EEEEEEC---CHHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCC------EEEEEECCCCCHHHHHHHHHHcC
Confidence 34678888866556677889898887788888754432 68888864 455566666654
No 416
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=45.83 E-value=46 Score=26.16 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEEEccC
Q 035855 117 LPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVKRALP 187 (456)
Q Consensus 117 Lp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~~a~~ 187 (456)
++..+.-+||+.-. ..||...++..+.+ .-.|-..+.+++++|++.++....-+.|+|-...+
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQ 83 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEEC
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEEcC
Confidence 56778888887666 56898888887733 25688899999999999988555555555544443
No 417
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=45.16 E-value=1.2e+02 Score=26.72 Aligned_cols=126 Identities=12% Similarity=-0.059 Sum_probs=62.4
Q ss_pred EEEEcCC----CccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHH----cCCcCCCceEEE
Q 035855 7 KLFIGGI----SWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA-DPSILDRVLQ----DKHSLDGRTVEA 77 (456)
Q Consensus 7 ~LfVgnL----P~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~-d~e~A~kAl~----~~~~l~Gr~I~v 77 (456)
-+++..| ...+.-.+|+++|+..|- .+|+-... + |-.+.+-. +.++.+..|+ +...++-. +.|
T Consensus 8 iaLLRGINVGG~nkv~MadLr~~l~~lGf-~~V~TyI~--S----GNvvF~s~~~~~~l~~~ie~~l~~~fg~~v~-v~v 79 (183)
T 2hiy_A 8 ALLVRGINVGGKNKVVMAELRQELTNLGL-EKVESYIN--S----GNIFFTSIDSKAQLVEKLETFFAVHYPFIQS-FSL 79 (183)
T ss_dssp EEECSSCSCC-CCCCCHHHHHHHHHHHTC-EEEEEETT--T----TEEEEEECSCHHHHHHHHHHHHHHHCTTCCC-CEE
T ss_pred hhhccceecCCCCcccHHHHHHHHHHcCC-ccceEEEe--c----CCEEEecCCCHHHHHHHHHHHHHHhcCCCCC-EEE
Confidence 3566666 345789999999999874 44444332 2 33333222 3333344444 22222222 223
Q ss_pred EecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCCCCcceEEEE
Q 035855 78 KRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNTQRPRGFGFI 156 (456)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~tg~~rGfAFV 156 (456)
.....- ++.....+... ..+..+++|.=|+..++.++|.+.+...- ..+.+.+... ..|+
T Consensus 80 rs~~el--~~i~~~~Pf~~---------~~~~~~~~v~F~~~~~~~~~~~~~l~~~~~~~E~~~~~~~--------~iy~ 140 (183)
T 2hiy_A 80 LSLEDF--EAELENLPAWW---------SRDLARKDFLFYTEGLDVDQVIATVESLELKDEVLYFGKL--------GIFW 140 (183)
T ss_dssp EEHHHH--HHHHTTCCGGG---------GSCCSEEEEEEECTTCCHHHHHHHHHTSCCCSEEEEECSS--------EEEE
T ss_pred ecHHHH--HHHHHhCCCCc---------cCCCcEEEEEEECCCCChHHHHHHhhccCCCCeEEEEECC--------EEEE
Confidence 222211 11111110000 00235666666777888898777666543 3455665422 6788
Q ss_pred -EeC
Q 035855 157 -SFD 159 (456)
Q Consensus 157 -~F~ 159 (456)
.|.
T Consensus 141 ~~~~ 144 (183)
T 2hiy_A 141 GKFS 144 (183)
T ss_dssp EECC
T ss_pred EEeC
Confidence 884
No 418
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=45.06 E-value=56 Score=21.92 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD---TEDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~---s~eaa~aal~~~~ 172 (456)
+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+ +.+.+.++++...
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK------KSVVVEFDAPATQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC------CEEEEEECCCCCHHHHHHHHHHcC
Confidence 46677776655667788888887778777775432 25788885 3566667776654
No 419
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=44.53 E-value=43 Score=27.69 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=43.0
Q ss_pred cEEEEcCCCCCCCHHHH---HHHHHhcCceeEEEEeecCCCCCcceEEEEEe--CCHHHHHHHHHHcC-----------C
Q 035855 110 KKIFVGGLPPTLTEDGF---RQYFEAYGHVTDVVIMYDQNTQRPRGFGFISF--DTEDAVDRVLQKTF-----------H 173 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL---~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F--~s~eaa~aal~~~~-----------~ 173 (456)
-.|.|..+|..+..+-. +.+-..|..-....|| +...|...|.| ++.++.++||+.+- .
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-----gsgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-----GSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-----CTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-----eCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 34677777766544322 2233345444445565 44566888999 67889888887653 2
Q ss_pred ccCCcEEEEEE
Q 035855 174 DLNGKQVEVKR 184 (456)
Q Consensus 174 ~l~Gr~I~V~~ 184 (456)
.|++..|++..
T Consensus 118 tl~gn~l~i~i 128 (170)
T 4hhu_A 118 TLSGNRLVIVI 128 (170)
T ss_dssp EECSSEEEEEE
T ss_pred EEeCCEEEEEE
Confidence 46777776654
No 420
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.95 E-value=40 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=18.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHcC
Q 035855 150 PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 150 ~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.|||-.-+..++++.++.|+.+-
T Consensus 99 rrgfevrtvtspddfkkslerli 121 (134)
T 2l69_A 99 RRGFEVRTVTSPDDFKKSLERLI 121 (134)
T ss_dssp HTTCCEEEESSHHHHHHHHHHHH
T ss_pred hcCceEEEecChHHHHHHHHHHH
Confidence 36788888888998888887654
No 421
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=43.29 E-value=82 Score=33.64 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=42.1
Q ss_pred cCCCccCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 11 GGISWETSEERLREYFS----QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 11 gnLP~~vtee~L~e~F~----~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
+..+++.+--+|..+|- .+|.|.++.|...+ ..+.+-+++|.|.|.++|.+++..
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~ 407 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLRE 407 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHH
Confidence 34566666668899985 67889998887665 344566889999999999998873
No 422
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.98 E-value=51 Score=25.71 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 035855 117 LPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQK 170 (456)
Q Consensus 117 Lp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~ 170 (456)
+...++..+|++.+++ |+ .|..|..+..+.. . =-|+|++...+++..+..+
T Consensus 30 Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-E--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp ECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-C--EEEEEEECTTSCHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-c--eEEEEEcCCCCcHHHHHHh
Confidence 5678999999999988 44 4666665543321 1 1599999765444444333
No 423
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=42.76 E-value=35 Score=27.49 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcCCccCCcEEEEE
Q 035855 116 GLPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTFHDLNGKQVEVK 183 (456)
Q Consensus 116 nLp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~~~l~Gr~I~V~ 183 (456)
-++..+.-+||+.-. ..||...++..+.+ .-.|-..+.+++++|++.++....-+.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 356778888888766 56898888888733 2568889999999999998844444444443
No 424
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=42.14 E-value=15 Score=33.02 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=22.8
Q ss_pred cceEEEEEeCCHHHHHHHHHcCCcCCCceEEE
Q 035855 46 PRGFGFVVFADPSILDRVLQDKHSLDGRTVEA 77 (456)
Q Consensus 46 srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v 77 (456)
.+--.||.|+++++|.++++....| +.|.|
T Consensus 96 ~~~~v~il~k~p~d~~~lve~Gv~i--~~vNv 125 (187)
T 3lfj_A 96 VEEKVFLLFKNIDTCKRVMDGGLPI--TTLNI 125 (187)
T ss_dssp SCEEEEEEESSHHHHHHHHHTTCCC--SEEEE
T ss_pred CCceEEEEECCHHHHHHHHHcCCCC--CEEEE
Confidence 3457899999999999999976655 34554
No 425
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=41.87 E-value=81 Score=21.53 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=41.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD----TEDAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~----s~eaa~aal~~~~ 172 (456)
..+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+ +.+.+.++++..+
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1osd_A 4 TVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFET------RQAVVTFDDAKTSVQKLTKATADAG 65 (72)
T ss_dssp EEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEETTTCCHHHHHHHHHHTT
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHhcC
Confidence 3467888887777778899999888778888775432 25888885 3566777777665
No 426
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=40.78 E-value=48 Score=34.44 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=31.5
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHHc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGF-VVFADPSILDRVLQD 66 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaF-VeF~d~e~A~kAl~~ 66 (456)
..+|.|..||+.++.+.|.+..... ..|..+.-++|..+. .+.-| |+++....++.+++.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~--~gvrivIelk~~~~~e~vl~~ 338 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDR--TGLRIAIELKKDVNSESIKNY 338 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBT--TBCCEEEEC------CHHHHH
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCC--CceEEEEEECCCcCHHHHHHH
Confidence 3689999999999998888876542 333334444444331 23333 445555555555553
No 427
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=40.53 E-value=81 Score=21.16 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
++.|.++.-......|++.+.+.-.|..+.+-... +.+.|+|+. .+.+.++++...
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 62 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK------EKAVVKFDEANVQATEICQAINELG 62 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHTTS
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 57888887777778899999888778887775432 268889863 456666676654
No 428
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=40.35 E-value=32 Score=34.93 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=13.3
Q ss_pred ccCcHHHH-HHHHhcCCCeeEE
Q 035855 15 WETSEERL-REYFSQYGDVLQT 35 (456)
Q Consensus 15 ~~vtee~L-~e~F~~~G~V~~v 35 (456)
.++++.+| +++|++||-+...
T Consensus 18 ~~~~~~~~a~~yL~~yGYl~~~ 39 (425)
T 1l6j_A 18 TNLTDRQLAEEYLYRYGYTRVA 39 (425)
T ss_dssp CCCCHHHHHHHHHHHTTCC---
T ss_pred cCcccHHHHHHHHHHcCCCCCc
Confidence 34555555 8999999987543
No 429
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=39.64 E-value=81 Score=29.28 Aligned_cols=167 Identities=8% Similarity=-0.009 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeecCCC----------CCcceEEEEEeCCHHHHHHHHHcC--
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGD-VLQTVVMREKTT----------GRPRGFGFVVFADPSILDRVLQDK-- 67 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d~~t----------g~srGfaFVeF~d~e~A~kAl~~~-- 67 (456)
||-.-++|.|..- .-..++|.+.|++.|- +..+-+++.... .....|-+|.|.+...++.+++..
T Consensus 10 ~~~~g~~IlvTRp--~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~ 87 (269)
T 3re1_A 10 MDMSAWRLLLTRP--AEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDE 87 (269)
T ss_dssp ---CCCEEEECSC--HHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCC--hHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHH
Confidence 5666678888753 2335678999998873 222222221110 122468899999999998877622
Q ss_pred --CcCCCceEEEEecchhHHHhhhccc--CCCCCCCCCCCC---------CcccccEEEEcCCCCCCCHHHHHHHHHhcC
Q 035855 68 --HSLDGRTVEAKRAMSREEQQFSARS--GNTNSGRSNGGG---------GTIRTKKIFVGGLPPTLTEDGFRQYFEAYG 134 (456)
Q Consensus 68 --~~l~Gr~I~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~LfV~nLp~~~teedL~~~F~~fG 134 (456)
..+...++-+.-....+.-+..... ..........-. .....+.|+++. +...++|.+.+++.|
T Consensus 88 ~~~~~~~~~i~aVG~~Ta~aL~~~G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg---~~~r~~L~~~L~~~G 164 (269)
T 3re1_A 88 VWPQPPMQPWFSVGSATGQILLDYGLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRG---NEGRELLAEQLRERG 164 (269)
T ss_dssp HCSSCCCSCEEESSHHHHHHHHHTTCCEECC-------CGGGCHHHHHHHCSSSCEEEEEEC---SSCCCHHHHHHHHTT
T ss_pred hCCCcccCEEEEECHHHHHHHHHcCCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEcc---CccHHHHHHHHHHCC
Confidence 1222222322111111111110000 000000000000 111234556553 334578888888887
Q ss_pred -ceeEEEEeecCCCC----C------cceEEEEEeCCHHHHHHHHHHcC
Q 035855 135 -HVTDVVIMYDQNTQ----R------PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 135 -~V~~v~i~~d~~tg----~------~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.|.++.+.+..... . ...+-.|.|.+.+.++..++.+.
T Consensus 165 ~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~ 213 (269)
T 3re1_A 165 VGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAG 213 (269)
T ss_dssp CEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHG
T ss_pred CEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhh
Confidence 45555554322111 0 12367899999999888777654
No 430
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=39.29 E-value=99 Score=21.77 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=44.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
...+|.|.++.-......|++.+.+.-.|..+.+-.... .+.|+|+. .+.+.++++....
T Consensus 8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~~i~~~i~~~Gy 71 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEK------NATIIYDPKLQTPKTLQEAIDDMGF 71 (79)
T ss_dssp EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGT------EEEEEECTTTCCHHHHHHHHHHHCC
T ss_pred EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCC------EEEEEECCCCCCHHHHHHHHHHCCC
Confidence 456788999988888888999999887788887754432 68889853 4667777776653
No 431
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=39.28 E-value=38 Score=34.82 Aligned_cols=61 Identities=10% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEEE-EEeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFGF-VVFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfaF-VeF~d~e~A~kAl~ 65 (456)
+..+|-|..||+.++.+.|.+.+... ..+..+.-++|.++.+ .+.-| |+++....++..++
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~ 299 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVIN 299 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHH
Confidence 45679999999999999888877642 3333344445441211 13333 45554444444444
No 432
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=38.47 E-value=1e+02 Score=24.57 Aligned_cols=57 Identities=7% Similarity=0.123 Sum_probs=35.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-------cCceeEEEEeecCCC-CCc---ceEEEEEeCCHHHHHHHH
Q 035855 112 IFVGGLPPTLTEDGFRQYFEA-------YGHVTDVVIMYDQNT-QRP---RGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~-------fG~V~~v~i~~d~~t-g~~---rGfAFV~F~s~eaa~aal 168 (456)
|.+-.|..++++++++++.+. .-.|+.+.+-++... .+. .-.-.++|+++++.++-+
T Consensus 14 iVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 14 VLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 444458888888876655543 345677777665433 222 334567889998877654
No 433
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=37.60 E-value=94 Score=21.06 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=39.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC---HHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT---EDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s---~eaa~aal~~~~ 172 (456)
+|.|.++.-......|++.+.+.-.|..+.+-.... .+.|+|+. .+.+.++++...
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~i~~~i~~~G 61 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKG------TAQLAIVPGTSPDALTAAVAGLG 61 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTT------EEEEEECTTSCHHHHHHHHHTTT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCC------EEEEEECCCCCHHHHHHHHHHCC
Confidence 477788876666788899998887788888754432 57888864 466667776654
No 434
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=36.79 E-value=1.2e+02 Score=23.77 Aligned_cols=55 Identities=7% Similarity=0.134 Sum_probs=37.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCce--eEEEE-eecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 112 IFVGGLPPTLTEDGFRQYFEA-YGHV--TDVVI-MYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~-fG~V--~~v~i-~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
|.+..+|.+++-++|.+.+.. |... ..+.| .+|.+ + -+|++.+.++++.|+....
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe-G-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE-G-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS-S-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC-C-----CcccccCHHHHHHHHHHHH
Confidence 556667889999998877754 4321 22333 34543 3 3699999999999998654
No 435
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=36.44 E-value=1.7e+02 Score=23.73 Aligned_cols=59 Identities=10% Similarity=-0.004 Sum_probs=36.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHh-------cCceeEEEEeecCCC-CCcce---EEEEEeCCHHHHHHHH
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEA-------YGHVTDVVIMYDQNT-QRPRG---FGFISFDTEDAVDRVL 168 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~-------fG~V~~v~i~~d~~t-g~~rG---fAFV~F~s~eaa~aal 168 (456)
+-|.+-.|..++++++++++.+. .-.|+.+.+-++... .+.++ ...++|+++++.++-+
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 33455568888888776655543 345677777655432 22233 3567889998877654
No 436
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=35.41 E-value=1.1e+02 Score=21.18 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=40.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+.+.++++....
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~Gy 65 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDMGF 65 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 457787776555667788888887778887775443 268889853 5667777777653
No 437
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=35.38 E-value=1.2e+02 Score=21.82 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=43.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC----CHHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD----TEDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~----s~eaa~aal~~~~~ 173 (456)
...+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+ +.+.+.++|+....
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~Gy 72 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDN------QEATIVYQPHLISVEEMKKQIEAMGF 72 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTT------TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34568898888777778899999988778888874432 26889995 35667777776653
No 438
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=35.28 E-value=1.4e+02 Score=23.34 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=44.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
...+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+. .+.+.++|+....
T Consensus 8 ~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~------~~~~V~~~~~~~~~~~i~~~i~~~Gy 71 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAALGY 71 (111)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTT------TEEEEEECTTTCSHHHHHHHHHTTTC
T ss_pred eEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 34568888888777788899999887778888775432 268899963 4667777777654
No 439
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=35.25 E-value=1.1e+02 Score=23.81 Aligned_cols=54 Identities=13% Similarity=-0.030 Sum_probs=33.5
Q ss_pred EEcCCCCCCCHHHHHHHHH-------hcCceeEEEEeecCCCCCc---ceEEEEEeCCHHHHHHH
Q 035855 113 FVGGLPPTLTEDGFRQYFE-------AYGHVTDVVIMYDQNTQRP---RGFGFISFDTEDAVDRV 167 (456)
Q Consensus 113 fV~nLp~~~teedL~~~F~-------~fG~V~~v~i~~d~~tg~~---rGfAFV~F~s~eaa~aa 167 (456)
.+-.|..++++++++++.+ +.-.|+.+.+-.+.. .+. .-.-.++|+++++.++-
T Consensus 9 Vlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y 72 (103)
T 2qyc_A 9 VMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAY 72 (103)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHH
Confidence 3335778888776555543 345677777766644 232 33456788998887654
No 440
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=35.04 E-value=62 Score=22.43 Aligned_cols=58 Identities=7% Similarity=0.067 Sum_probs=40.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
..+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+. .+.+.++++...
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 66 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDPEIIGPRDIIHTIESLG 66 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECTTTTHHHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 4578899988777778899999887778888775433 268889964 344555665543
No 441
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=34.84 E-value=48 Score=28.63 Aligned_cols=49 Identities=18% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHh-cCceeEEEEeecCCC----CCcceEEEEEeCCHHHHHHHH
Q 035855 119 PTLTEDGFRQYFEA-YGHVTDVVIMYDQNT----QRPRGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 119 ~~~teedL~~~F~~-fG~V~~v~i~~d~~t----g~~rGfAFV~F~s~eaa~aal 168 (456)
.+++..||++.+.+ |..-.++.|+..-.| +++.|||.| |+++|.|++..
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~E 84 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKYE 84 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhhC
Confidence 46788898888755 665444444433333 456777765 68888887763
No 442
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=34.82 E-value=43 Score=30.84 Aligned_cols=113 Identities=11% Similarity=0.154 Sum_probs=55.6
Q ss_pred CccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHH-----cC-Cc--CCCceEEEEecch
Q 035855 14 SWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFA---DPSILDRVLQ-----DK-HS--LDGRTVEAKRAMS 82 (456)
Q Consensus 14 P~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~---d~e~A~kAl~-----~~-~~--l~Gr~I~v~~a~~ 82 (456)
..++.+.+|+++|+.+.++....++.++.- +|..-+.+. +.+++..+++ .. .. .++..+.|.....
T Consensus 10 sl~f~~~~i~~vl~~la~~~g~n~vvd~~V---~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~ 86 (241)
T 3ezj_A 10 TANFKDTDLKSFIETVGANLNKTIIMGPGV---QGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSA 86 (241)
T ss_dssp CCEEEEEEHHHHHHHHHHHHTCEEEC---C---CCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC--
T ss_pred EEEeCCCCHHHHHHHHHHHhCCeEEECCCC---cceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHH
Confidence 334555667777777777777777766542 355555564 4666666544 11 12 3677777766543
Q ss_pred hHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhc
Q 035855 83 REEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAY 133 (456)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~f 133 (456)
...+..... . ............++.|.+.+....--...|+.++..-
T Consensus 87 ~~~~~~~~~--~--~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 87 AKVEPLPLV--G--EGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp ---------------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred hhhcCCccc--c--CCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 222211000 0 0000111223455667777776666666777777665
No 443
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=34.77 E-value=54 Score=33.24 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=45.3
Q ss_pred CcHHHH-HHHHhc-CCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEecchhHHHhhhcccCC
Q 035855 17 TSEERL-REYFSQ-YGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKRAMSREEQQFSARSGN 94 (456)
Q Consensus 17 vtee~L-~e~F~~-~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~a~~~~~~~~~~~~~~ 94 (456)
+++.+| +++|++ ||-+... . +.++.++||++++++.+.++.=+.-....+.....+-..
T Consensus 13 ~~~~~~a~~yL~~~yGyl~~~--------~-----------~~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~PRCGv 73 (421)
T 1eak_A 13 KTDKELAVQYLNTFYGCPKES--------C-----------NLFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGN 73 (421)
T ss_dssp CCHHHHHHHHHHHHTCCCSSC--------C-----------CHHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSCBCSS
T ss_pred CccHHHHHHHHHHhcCCCCCC--------C-----------chHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCCCCCC
Confidence 444444 889999 9876321 0 456667777755555544443333222222222222111
Q ss_pred CCCCCCCCCC--C--cccccEEEEcCCCCCCCHHHHHHHHH
Q 035855 95 TNSGRSNGGG--G--TIRTKKIFVGGLPPTLTEDGFRQYFE 131 (456)
Q Consensus 95 ~~~~~~~~~~--~--~~~~~~LfV~nLp~~~teedL~~~F~ 131 (456)
.......... . ....-+-.|.+.+.+++.++++++++
T Consensus 74 pD~~~~~~~~~~~kW~k~~LTY~i~~~~~~l~~~~v~~~i~ 114 (421)
T 1eak_A 74 PDVANYNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDAFA 114 (421)
T ss_dssp CSSCSSCCSSCCCCCSSSEEEEEECCCCTTSCHHHHHHHHH
T ss_pred CCccccccccCCcccccceEEEEEecCCCCCCHHHHHHHHH
Confidence 1111000000 0 11223446678888888777665543
No 444
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=34.43 E-value=57 Score=28.84 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=35.3
Q ss_pred EEEEcCCCcc---------CcHHHHHHHH--hcCCCeeEEEEeecCCCCCcceEEEEEeCCHH
Q 035855 7 KLFIGGISWE---------TSEERLREYF--SQYGDVLQTVVMREKTTGRPRGFGFVVFADPS 58 (456)
Q Consensus 7 ~LfVgnLP~~---------vtee~L~e~F--~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e 58 (456)
.+.|-|||.+ .+..+|++.| +.|.+++ ++.+..+. -.+|++.|+|.+.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCCh
Confidence 4567888872 3457999977 9999875 66666543 36789999998543
No 445
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=34.38 E-value=1.1e+02 Score=21.06 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=41.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC--HHHHHHHHHHcC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT--EDAVDRVLQKTF 172 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s--~eaa~aal~~~~ 172 (456)
..+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+. .+.+.++++...
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~G 63 (73)
T 1mwy_A 4 RYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKAG 63 (73)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHHT
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHcC
Confidence 3568888887776778899999888778888775433 258889865 455666676654
No 446
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=33.42 E-value=1.7e+02 Score=26.53 Aligned_cols=163 Identities=10% Similarity=-0.001 Sum_probs=79.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeec---CCC-------CCcceEEEEEeCCHHHHHHHHHcC----Cc
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGD-VLQTVVMRE---KTT-------GRPRGFGFVVFADPSILDRVLQDK----HS 69 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d---~~t-------g~srGfaFVeF~d~e~A~kAl~~~----~~ 69 (456)
-++|.|..- .-..++|.+.+++.|- |..+-+++. ... .....|-+|.|.+...++.+++.. ..
T Consensus 6 g~~vlvtRp--~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~ 83 (254)
T 4es6_A 6 GWRLLLTRP--DEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQ 83 (254)
T ss_dssp CCEEEECSC--HHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSS
T ss_pred CCEEEEeCC--hHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCC
Confidence 345655532 2234678889988874 222221111 111 123468899999999999887622 12
Q ss_pred CCCceEEEEecchhHHHhhhcccC-CCCCCC-C----CCC-----CCcccccEEEEcCCCCCCCHHHHHHHHHhcCc-ee
Q 035855 70 LDGRTVEAKRAMSREEQQFSARSG-NTNSGR-S----NGG-----GGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGH-VT 137 (456)
Q Consensus 70 l~Gr~I~v~~a~~~~~~~~~~~~~-~~~~~~-~----~~~-----~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~-V~ 137 (456)
+...++.+.-....+.-+..-... ...... . ... ......+.|+++. +...++|.+.+.+.|. |.
T Consensus 84 ~~~~~i~aVG~~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg---~~~r~~L~~~L~~~G~~v~ 160 (254)
T 4es6_A 84 PPQQTWCSVGAATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRG---EGGREFLAERLRGQGVQVD 160 (254)
T ss_dssp CCSCEEEESSHHHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEEC---SSCCCHHHHHHHHTTCEEE
T ss_pred cccCEEEEECHHHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcC---CccHHHHHHHHHHCCCEEE
Confidence 222222221111111111100000 000000 0 000 0112234566553 3455788888888774 55
Q ss_pred EEEEeecCCCCC----------cceEEEEEeCCHHHHHHHHHHcC
Q 035855 138 DVVIMYDQNTQR----------PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 138 ~v~i~~d~~tg~----------~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
++.+.+...... ...+-.|.|.+.+.++..++.+.
T Consensus 161 ~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~ 205 (254)
T 4es6_A 161 YLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAA 205 (254)
T ss_dssp EEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHG
T ss_pred EEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhh
Confidence 555543221111 12367899999999998887764
No 447
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=32.43 E-value=82 Score=21.50 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+.+.++++...
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDMG 65 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHCC
Confidence 467787776555567788888887778777775443 268889863 466677777664
No 448
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=31.89 E-value=1.8e+02 Score=23.58 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=39.0
Q ss_pred cEEEEcCCCccCcHHHHHHHHh-------cCCCeeEEEEeecCCC-CCcceE---EEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFS-------QYGDVLQTVVMREKTT-GRPRGF---GFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~-------~~G~V~~v~i~~d~~t-g~srGf---aFVeF~d~e~A~kAl~ 65 (456)
+.|.+=.|..+++++++.++++ +...|+.+.+-.+... .+.++| ..++|++.++-+.-+.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 22 YHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp EEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 3455567888888887666654 3566777777666542 344444 3457888888776665
No 449
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=31.62 E-value=48 Score=25.92 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.7
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+|++|+|.+-...++-++||-|+|+++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~ 31 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA 31 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE
Confidence 588899877766788999999999874
No 450
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.44 E-value=87 Score=24.37 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=23.3
Q ss_pred eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 136 VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 136 V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
|.+|.++. ...||.||+++..+++..+++...
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 55555542 378999999999888877776553
No 451
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=30.78 E-value=1.2e+02 Score=20.05 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|+. .+.+.++++....
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G~ 65 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEA------GKVDVSFDADKVSVKDIADAIEDQGY 65 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHTTC
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 457787776555566788888887778777764332 258888863 4566666766543
No 452
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=30.55 E-value=68 Score=21.99 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=36.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
+|.|.++.-......|++.+.+. .|..+.+-... ..+.|+++..+.+.++++...
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~------~~~~v~~~~~~~i~~~i~~~G 58 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEE------KKVVVETENLDSVLKKLEEID 58 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTT------TEEEEECSCHHHHHHHHHTTT
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCC------CEEEEEECCHHHHHHHHHHcC
Confidence 46666665555567788888888 78888775432 268888876555566666654
No 453
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=30.21 E-value=1.9e+02 Score=25.97 Aligned_cols=161 Identities=9% Similarity=0.072 Sum_probs=80.3
Q ss_pred EEEEcCCCccCcHHHHHHHHhcCCC-eeEEEEeecCCCC-------CcceEEEEEeCCHHHHHHHHHcCC-cCCCceEEE
Q 035855 7 KLFIGGISWETSEERLREYFSQYGD-VLQTVVMREKTTG-------RPRGFGFVVFADPSILDRVLQDKH-SLDGRTVEA 77 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~~G~-V~~v~i~~d~~tg-------~srGfaFVeF~d~e~A~kAl~~~~-~l~Gr~I~v 77 (456)
+|.|..- .-..++|.+.+++.|- +..+-+++..... ....|-+|.|.+...++.+++... .+...++-+
T Consensus 3 ~vlvtRp--~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~l~~~d~viftS~~aV~~~~~~l~~~l~~~~~~a 80 (240)
T 3mw8_A 3 KLLLTRP--EGKNAAMASALDALAIPYLVEPLLSVEAAAVTQAQLDELSRADILIFISTSAVSFATPWLKDQWPKATYYA 80 (240)
T ss_dssp CEEECSC--TTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHHHHHHHTTCSEEEECSHHHHHHHHHHHTTCCCSSEEEE
T ss_pred EEEEeCC--hHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHHHHHHhcCCCEEEEECHHHHHHHHHHHHhhCcCCeEEE
Confidence 4555542 2234578888887763 3332222211000 113478999999999998887432 344334433
Q ss_pred EecchhHHHhhhcccC--CCCCC-CCC-----C-CCCcccccEEEEcCCCCCCCHHHHHHHHHhcC-ceeEEEEeecCCC
Q 035855 78 KRAMSREEQQFSARSG--NTNSG-RSN-----G-GGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYG-HVTDVVIMYDQNT 147 (456)
Q Consensus 78 ~~a~~~~~~~~~~~~~--~~~~~-~~~-----~-~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG-~V~~v~i~~d~~t 147 (456)
.-....+.-+..-... ..... ... . .......+.|+++. +...++|.+.+++.| .|.++.+.+....
T Consensus 81 VG~~Ta~~L~~~G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg---~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~ 157 (240)
T 3mw8_A 81 VGDATADALALQGITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRG---KGGREAMADGLRLRGANVSYLEVYQRACP 157 (240)
T ss_dssp SSHHHHHHHHHTTCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEE---SSSCCHHHHHHHHTTCEEEEEEEEEEECC
T ss_pred ECHHHHHHHHHcCCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeC---CCcHHHHHHHHHHCCCEEEEEEEEEeeCC
Confidence 2111111111110000 00000 000 0 00112234566553 334578888888887 4666666543222
Q ss_pred CC----------cceEEEEEeCCHHHHHHHHHHcC
Q 035855 148 QR----------PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 148 g~----------~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.. ...+-.|.|.+.+.++..++...
T Consensus 158 ~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~ 192 (240)
T 3mw8_A 158 PLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVP 192 (240)
T ss_dssp CCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcc
Confidence 11 12367899999999999988775
No 454
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=30.10 E-value=49 Score=35.68 Aligned_cols=59 Identities=12% Similarity=0.275 Sum_probs=35.3
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecC-CCCCcceEE-EEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREK-TTGRPRGFG-FVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~-~tg~srGfa-FVeF~d~e~A~kAl~ 65 (456)
..+|.|..||+.++.+.|.+..... ..+..+.-++|. .+ + .+.- -|+++....++..++
T Consensus 457 ~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd-~-~gvrivI~lk~~~~~~~~l~ 520 (692)
T 2xcs_B 457 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSL-R-TGVRVVIDVRKDANASVILN 520 (692)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBT-T-TBSCEEEEECTTSCHHHHHH
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCC-C-CceEEEEEECCCCCHHHHHH
Confidence 5689999999999998887766532 334344445554 22 1 1232 345665555555554
No 455
>4ev1_A Anabena TIC22; TIC22 fold, chaperon, protein transport, TIC22-like family, thylakoids, chaperone; HET: NHE; 1.95A {Anabaena SP}
Probab=29.71 E-value=2.4e+02 Score=26.30 Aligned_cols=18 Identities=0% Similarity=-0.105 Sum_probs=14.7
Q ss_pred EEEEEeCCHHHHHHHHHc
Q 035855 49 FGFVVFADPSILDRVLQD 66 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~ 66 (456)
-.+..|-+.++|+++|+.
T Consensus 43 ~V~~~F~s~~dA~~~L~~ 60 (252)
T 4ev1_A 43 SITGAYMSRQEAQAFINE 60 (252)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred eEEEEEecHHHHHHHHHH
Confidence 457778899999999983
No 456
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=29.67 E-value=1.3e+02 Score=20.44 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=42.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
...+|.|.++.-......|++.+.+.-.|..+.+-.... .+.|+|++ .+++.++++...
T Consensus 6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~------~~~v~~~~~~~~~~~i~~~i~~~G 68 (76)
T 1opz_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATE------TVNVIYDPAETGTAAIQEKIEKLG 68 (76)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGT------EEEEEECTTTCCHHHHHHHHHHHT
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCC------EEEEEECCCCCCHHHHHHHHHHCC
Confidence 345788888877767788999998877788777754432 58888853 466667776654
No 457
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.49 E-value=1.4e+02 Score=22.92 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=39.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD-TEDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~-s~eaa~aal~~~~~ 173 (456)
...+|.|. +.-..-...|++.+.+.--|.++.+-.... .+.|+++ +.+.+.++|+....
T Consensus 19 ~~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~------~~~V~~~~~~~~i~~~i~~~Gy 78 (98)
T 2crl_A 19 CTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQ------MVLVHTTLPSQEVQALLEGTGR 78 (98)
T ss_dssp EEEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTT------EEEEEESSCHHHHHHHHHTTTS
T ss_pred eEEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCC------EEEEEEeCCHHHHHHHHHHhCC
Confidence 33456776 654445577888888877788888754432 5788885 46777888876643
No 458
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=29.36 E-value=40 Score=26.97 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHh-cCceeEEEEeecCCC----CCcceEEEEEeCCHHHHHHHHHH
Q 035855 119 PTLTEDGFRQYFEA-YGHVTDVVIMYDQNT----QRPRGFGFISFDTEDAVDRVLQK 170 (456)
Q Consensus 119 ~~~teedL~~~F~~-fG~V~~v~i~~d~~t----g~~rGfAFV~F~s~eaa~aal~~ 170 (456)
.+++..||++.+.+ |..-.++.++..-.| ++++|||.| |+|.+.+++...+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~Epk 84 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLYEPD 84 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCcc
Confidence 46678888877644 655455555544444 456777754 6778877776543
No 459
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=28.18 E-value=58 Score=26.16 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.6
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+|++|+|.+-...++-++||-|+|++.
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd~ 31 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDHE 31 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE
Confidence 588898877766688999999999874
No 460
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=28.00 E-value=78 Score=32.69 Aligned_cols=60 Identities=12% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCcEEEEcCCCccCcHHHHHHHHhcC---CCeeEEEEeecCCCCCcceEE-EEEeCCHHHHHHHHH
Q 035855 4 DQGKLFIGGISWETSEERLREYFSQY---GDVLQTVVMREKTTGRPRGFG-FVVFADPSILDRVLQ 65 (456)
Q Consensus 4 ~~r~LfVgnLP~~vtee~L~e~F~~~---G~V~~v~i~~d~~tg~srGfa-FVeF~d~e~A~kAl~ 65 (456)
...+|-|..||+.++.+.|.+.+... ..|..+.-++|..+.. ++- -|+.+....++..+.
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~--gvrivIelk~~~~~~~~l~ 288 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKD--GMRMVIEIKRGEVGEVVLN 288 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSS--CCCEEEEECTTSCHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCC--ceEEEEEECCCCCHHHHHH
Confidence 35689999999999988888876532 3343344455543322 233 345554444554444
No 461
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.81 E-value=1.1e+02 Score=23.71 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=28.6
Q ss_pred cHHHHHHHHhc----CC-CeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHc
Q 035855 18 SEERLREYFSQ----YG-DVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQD 66 (456)
Q Consensus 18 tee~L~e~F~~----~G-~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~ 66 (456)
.|..+++.+++ .+ +|.++.+.. ...||.||++...++...+|++
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~ 69 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKG 69 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHC
Confidence 35555555542 22 254555443 3789999999999888888874
No 462
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=27.69 E-value=1.5e+02 Score=20.49 Aligned_cols=57 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHcCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD-TEDAVDRVLQKTFH 173 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~-s~eaa~aal~~~~~ 173 (456)
..+|.| ++.=.--...|++.+.+.--| .+.+-.... .+.|+++ +.+.+.++++..+.
T Consensus 3 ~~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~------~~~v~~~~~~~~i~~~i~~~Gy 60 (68)
T 3iwl_A 3 KHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNK------KVCIESEHSMDTLLATLKKTGK 60 (68)
T ss_dssp EEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTT------EEEEEESSCHHHHHHHHHTTCS
T ss_pred eEEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCC------EEEEEecCCHHHHHHHHHHcCC
Confidence 356778 887666678888888887677 777754433 4778884 47788888877653
No 463
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=27.57 E-value=84 Score=25.47 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhc-------CceeEEEEeecCCCCCcce---EEEEEeCCHHHHHHHH
Q 035855 111 KIFVGGLPPTLTEDGFRQYFEAY-------GHVTDVVIMYDQNTQRPRG---FGFISFDTEDAVDRVL 168 (456)
Q Consensus 111 ~LfV~nLp~~~teedL~~~F~~f-------G~V~~v~i~~d~~tg~~rG---fAFV~F~s~eaa~aal 168 (456)
-|.+-.|..++++++++++.+.+ -.|+.+.+-.+.. .+.++ .-.++|+++++.++-+
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 34444688888888766665543 2456666655543 23233 3566788888876544
No 464
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=26.89 E-value=1.2e+02 Score=20.59 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=37.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC---CHHHHHHHHHHcC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD---TEDAVDRVLQKTF 172 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~---s~eaa~aal~~~~ 172 (456)
.+|.|.++.-......|++.+.+.--|..+.+-.. ...+.|+|+ +.+.+.++++...
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G 63 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDCG 63 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHCC
Confidence 45778777655556778888887766776666332 236788886 3566667776665
No 465
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.60 E-value=1e+02 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=21.9
Q ss_pred cceEEEEEeCCHHHHHHHHHcCCcCC
Q 035855 46 PRGFGFVVFADPSILDRVLQDKHSLD 71 (456)
Q Consensus 46 srGfaFVeF~d~e~A~kAl~~~~~l~ 71 (456)
.+||-|||=.++.+++.|++....+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57999999999999999999654443
No 466
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=26.48 E-value=86 Score=22.05 Aligned_cols=59 Identities=7% Similarity=0.094 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcCC
Q 035855 109 TKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTFH 173 (456)
Q Consensus 109 ~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~~ 173 (456)
..+|.|.++.-......|++.+.+.--|..+.+-... ..+.|+|+. .+.+.++++....
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~Gy 66 (77)
T 1y3j_A 4 KCYIQVTGMTCASCVANIERNLRREEGIYSILVALMA------GKAEVRYNPAVIQPPMIAEFIRELGF 66 (77)
T ss_dssp EEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTT------TBEEEEECTTTSCHHHHHHHHHHHTS
T ss_pred EEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcCC
Confidence 3568888887766778888888877667666653322 258888853 4566777776653
No 467
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.45 E-value=66 Score=26.08 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=22.2
Q ss_pred ceeEEEEeecCCCCCcceEEEEEeCCH
Q 035855 135 HVTDVVIMYDQNTQRPRGFGFISFDTE 161 (456)
Q Consensus 135 ~V~~v~i~~d~~tg~~rGfAFV~F~s~ 161 (456)
+|++|+|.+-...++-++||-|+|++.
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd~ 31 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA 31 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETTT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECCE
Confidence 578888877666788999999999874
No 468
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=26.40 E-value=1.5e+02 Score=24.17 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=33.5
Q ss_pred CCCCCCCHHHHHHHHHhcC--------ceeEEE-EeecCCCC---------CcceEEEEEeCCHHHHHHHHHH
Q 035855 116 GLPPTLTEDGFRQYFEAYG--------HVTDVV-IMYDQNTQ---------RPRGFGFISFDTEDAVDRVLQK 170 (456)
Q Consensus 116 nLp~~~teedL~~~F~~fG--------~V~~v~-i~~d~~tg---------~~rGfAFV~F~s~eaa~aal~~ 170 (456)
.=++.+|.|++++....+. ....+. ++.+..+. ...|++-+.|+|.+++++++..
T Consensus 18 ~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~v~~~~~~~~~~~~~~~~~DgiaElwF~d~ea~~aa~~s 90 (116)
T 3hf5_A 18 VKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQVYMES 90 (116)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEEEEECCCCCSSCBCCCCCCCEEEEEEESSHHHHHHHHHC
T ss_pred ecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEEEecCCCCCCCCcCCCCCcCEEEEEEECCHHHHHHHhCC
Confidence 3457788888887655332 222222 22222221 4568899999999988888753
No 469
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=26.20 E-value=1.6e+02 Score=23.41 Aligned_cols=59 Identities=8% Similarity=0.112 Sum_probs=38.0
Q ss_pred EEEEcCCCccCcHHHHHHHHhc-------CCCeeEEEEeecCCC-CCcceE---EEEEeCCHHHHHHHHH
Q 035855 7 KLFIGGISWETSEERLREYFSQ-------YGDVLQTVVMREKTT-GRPRGF---GFVVFADPSILDRVLQ 65 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~-------~G~V~~v~i~~d~~t-g~srGf---aFVeF~d~e~A~kAl~ 65 (456)
.|.+=.|..+++++++.++.+. ...|+.+.+-.+... .+.++| -.++|++.++-+.-+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 4445567788888887666543 456777777665443 334444 4567999988776665
No 470
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=26.12 E-value=81 Score=24.20 Aligned_cols=46 Identities=15% Similarity=0.428 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHhcCc-eeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC-CccCCcE
Q 035855 121 LTEDGFRQYFEAYGH-VTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF-HDLNGKQ 179 (456)
Q Consensus 121 ~teedL~~~F~~fG~-V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~-~~l~Gr~ 179 (456)
.|+++|+.+++.|-. -.+|++ +|...+.+.+++|.++.. .+|+=++
T Consensus 33 ktedelkkyleefrkesqnikv-------------lilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIKV-------------LILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEEE-------------EEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHhhccCeEE-------------EEEEcChHHHHHHHHHHHhhceeeee
Confidence 589999999988753 222332 344455666666655443 4454443
No 471
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=25.94 E-value=1.6e+02 Score=20.07 Aligned_cols=50 Identities=10% Similarity=0.200 Sum_probs=38.5
Q ss_pred CCCCCcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC
Q 035855 1 MDSDQGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD 56 (456)
Q Consensus 1 me~~~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d 56 (456)
|.....+|.|.++.-..-...|++.+.+...|..+.+-... ..+.|+|..
T Consensus 1 m~~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~ 50 (75)
T 1yjr_A 1 MGDGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALAT------NKAHIKYDP 50 (75)
T ss_dssp CCCCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTT------TEEEEEECT
T ss_pred CCceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecC------CEEEEEECC
Confidence 66667789999997777788899999998888887775432 467788864
No 472
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=25.92 E-value=1.5e+02 Score=19.72 Aligned_cols=57 Identities=14% Similarity=0.224 Sum_probs=38.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHcC
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKTF 172 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~~ 172 (456)
.+|.|.++.-......|++.+.+.-.|..+.+-... ..+.|+|++ .+.+.++++...
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVAT------GRLTVTYDPKQVSEITIQERIAALG 65 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTT------TEEEEEECTTTCCTHHHHHHHHTTT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHcC
Confidence 468888887666667788888887677777764332 257888864 355666666554
No 473
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=25.88 E-value=2e+02 Score=29.32 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=38.7
Q ss_pred CCccCcHHHHHHHHh----cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC
Q 035855 13 ISWETSEERLREYFS----QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67 (456)
Q Consensus 13 LP~~vtee~L~e~F~----~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~ 67 (456)
++++.+.-+|+.+|. .++.|.++.+...+. .+.+-.+++.|.+.++|.+++...
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPK-PRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEEC-CSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeec-CceeEEEEEEcCCHHHHHHHHHHH
Confidence 455555557777775 457788887776553 344567899999999999888743
No 474
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=25.78 E-value=1.5e+02 Score=20.85 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=40.2
Q ss_pred CcEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 5 QGKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 5 ~r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..+|.|.++.=.--...|++.+++ ..|..+.|-.. ...+.|+|.+.++..++|+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHH
Confidence 357889988777778899999999 88888777443 2467788875666666665
No 475
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.53 E-value=97 Score=24.02 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 116 GLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 116 nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
.++.+++..+|++.+++ |+ .|..|..+.-+. + .=-|+|++...++
T Consensus 28 ~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 28 AVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDD 74 (85)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSC
T ss_pred EECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCc
Confidence 35678999999999987 55 466666554332 1 1159999966543
No 476
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.82 E-value=1.1e+02 Score=26.16 Aligned_cols=49 Identities=14% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCH-HHHHHH
Q 035855 116 GLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTE-DAVDRV 167 (456)
Q Consensus 116 nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~-eaa~aa 167 (456)
-+...++..+|++.+++ |+ .|+.|..+.-+.. . =-|+|++... ++++-|
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g-~--KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNG-T--KKAYVRLTADYDALDIA 136 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTS-C--EEEEEEECTTCCHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-c--eEEEEEeCCCCcHHHHH
Confidence 35678999999999887 45 4666665544331 1 1599999664 344433
No 477
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=24.72 E-value=1.1e+02 Score=22.71 Aligned_cols=60 Identities=5% Similarity=-0.142 Sum_probs=40.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC-CHHHHHHHHHHcCC
Q 035855 108 RTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD-TEDAVDRVLQKTFH 173 (456)
Q Consensus 108 ~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~-s~eaa~aal~~~~~ 173 (456)
...+|.|.++.-......|++.+.+.--|..+.+-.... .+.|+++ +.+.+.++|+....
T Consensus 22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~------~~~V~~~~~~~~i~~~i~~~Gy 82 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASR------TVVVGGVSDAAHIAEIITAAGY 82 (85)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTT------EEEEESCCCHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCC------EEEEEecCCHHHHHHHHHHcCC
Confidence 345677777765555677888888877788787754432 5778874 46777788877653
No 478
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.43 E-value=32 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=34.3
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..+.|+|||+.++...|..+++....+..+.+|. .+|.|++.+.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~----------------QkEva~Rl~A 158 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML----------------QNEVVERMVA 158 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE----------------EHHHHHHHTC
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe----------------eHHHHHHHhC
Confidence 4578999999999999999998765565555554 4677888775
No 479
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.37 E-value=53 Score=32.40 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEcCCCccCcHHHHHHHHhc
Q 035855 7 KLFIGGISWETSEERLREYFSQ 28 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~ 28 (456)
.++|+|||+.++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999999875
No 480
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=24.29 E-value=1.3e+02 Score=23.99 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 035855 123 EDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVL 168 (456)
Q Consensus 123 eedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal 168 (456)
+.+|.+.+...| |.+-.|..+.+++ .=|++++.++ ++..+++
T Consensus 26 WPEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d-~~~~~~~ 67 (104)
T 1x8d_A 26 WPELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES-EERWNAV 67 (104)
T ss_dssp CHHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC-HHHHHHG
T ss_pred CHHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC-HHhHHhc
Confidence 467788888887 6677777775432 2389999988 3333333
No 481
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.22 E-value=1.6e+02 Score=23.51 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=29.5
Q ss_pred ccCcHHHHHHHHhcC-CC---eeEEE-EeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCC
Q 035855 15 WETSEERLREYFSQY-GD---VLQTV-VMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLD 71 (456)
Q Consensus 15 ~~vtee~L~e~F~~~-G~---V~~v~-i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~ 71 (456)
..++..+|++.+.+. .. ++-|. +...-..+++.|||.| |.|.+.|++. +.+|.|.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~-Epky~L~ 87 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV-EQEYVLK 87 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH-HTGGGCC
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh-Cchheee
Confidence 567888888888743 22 22222 2222224567777755 6666655544 4444433
No 482
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.91 E-value=1.4e+02 Score=23.98 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=20.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHcC
Q 035855 150 PRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 150 ~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
.+||.|||=+++.+++.||+...
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~ 72 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVG 72 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCG
T ss_pred CceEEEEEeCCHHHHHHHHhccc
Confidence 58999999999999999998774
No 483
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=23.89 E-value=2.7e+02 Score=22.03 Aligned_cols=65 Identities=8% Similarity=0.043 Sum_probs=47.9
Q ss_pred cCCCccCcHHHHHHHHh----------cCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEe
Q 035855 11 GGISWETSEERLREYFS----------QYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKR 79 (456)
Q Consensus 11 gnLP~~vtee~L~e~F~----------~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~ 79 (456)
-+||.+++.+++.++-. +-|.+..+..+ .++.+-++..+-+|.++-.+.|.....+.-.+|+|..
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpym~i~Vtp 83 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPYMDIEVDG 83 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCceEEEEEEE
Confidence 47899998888776653 44777776665 4666778899999999999888876666655666653
No 484
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=23.88 E-value=1.1e+02 Score=26.34 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCH-HHHHHH
Q 035855 117 LPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTE-DAVDRV 167 (456)
Q Consensus 117 Lp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~-eaa~aa 167 (456)
+...++..+|++.+++ |+ .|..|..+..+. +. =-|+|++... ++++-|
T Consensus 94 Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~--KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 94 VHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GN--KKAYIRLAADSDSLTLA 144 (150)
T ss_dssp ECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SC--EEEEEEECSSSCHHHHH
T ss_pred EcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--EEEEEEcCCCCcHHHHH
Confidence 5678899999999987 45 466666554433 11 1599999654 444433
No 485
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=23.43 E-value=2.2e+02 Score=22.07 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=35.7
Q ss_pred EEEcCCCccCcHHHHHHHHh-------cCCCeeEEEEeecCCCCCcceE---EEEEeCCHHHHHHHHH
Q 035855 8 LFIGGISWETSEERLREYFS-------QYGDVLQTVVMREKTTGRPRGF---GFVVFADPSILDRVLQ 65 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~-------~~G~V~~v~i~~d~~tg~srGf---aFVeF~d~e~A~kAl~ 65 (456)
|.+=.|..+++++++.++.+ +...|+.+.+-.+.. .+.++| -.++|++.++-+.-+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~ 74 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQV 74 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhC
Confidence 34445777888777666554 356788887777653 444444 3456888887765543
No 486
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=23.40 E-value=2.5e+02 Score=21.87 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCc----EEEEcCCCccCcHHHHHHHHh-------cCCCeeEEEEeecCCC---CCcceE---EEEEeCCHHHHHHH
Q 035855 1 MDSDQG----KLFIGGISWETSEERLREYFS-------QYGDVLQTVVMREKTT---GRPRGF---GFVVFADPSILDRV 63 (456)
Q Consensus 1 me~~~r----~LfVgnLP~~vtee~L~e~F~-------~~G~V~~v~i~~d~~t---g~srGf---aFVeF~d~e~A~kA 63 (456)
|..... .|.+=.|..+++++++.++.+ +...|+.+.+=.+... .+.++| -.++|++.++-+.-
T Consensus 1 m~~~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 1 MATRTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp --CCCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred CCCCCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Q ss_pred HH
Q 035855 64 LQ 65 (456)
Q Consensus 64 l~ 65 (456)
+.
T Consensus 81 ~~ 82 (108)
T 1tr0_A 81 LD 82 (108)
T ss_dssp HT
T ss_pred hC
No 487
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=23.16 E-value=2.6e+02 Score=21.75 Aligned_cols=53 Identities=11% Similarity=0.018 Sum_probs=34.8
Q ss_pred EEEcCCCccCcHHHHHHHHhcCCCe---eEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 8 LFIGGISWETSEERLREYFSQYGDV---LQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~G~V---~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
|.+-.+|.+++-++|.+.+...-.+ ..+.|.+....+. +|++.+.++-+.||+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD-----~itisSd~EL~eAl~ 72 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGD-----PCTVSSQLELEEAFR 72 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSC-----CEECCSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCC-----cccccCHHHHHHHHH
Confidence 5566678889988888777643222 2344444332332 599999999999998
No 488
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.14 E-value=51 Score=31.07 Aligned_cols=43 Identities=12% Similarity=0.356 Sum_probs=33.6
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~ 65 (456)
..+.|+|||+.++...|.++++. ..+..+.+|. .+|.|++.+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~----------------QkEva~Rl~A 153 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV----------------QKEVAERMTA 153 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE----------------EHHHHHHHTC
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe----------------eeeeeeeccc
Confidence 46799999999999999999988 5555555444 4677888775
No 489
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=22.25 E-value=3.7e+02 Score=23.03 Aligned_cols=155 Identities=15% Similarity=0.147 Sum_probs=81.5
Q ss_pred cEEEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHcCCcCCCceEEEEecc
Q 035855 6 GKLFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFAD----PSILDRVLQDKHSLDGRTVEAKRAM 81 (456)
Q Consensus 6 r~LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d----~e~A~kAl~~~~~l~Gr~I~v~~a~ 81 (456)
.+|.|.++.=.--...|+..+.+.-.|..+.|-... .-+.|+|.. .++..++|+... ..+..+.+....
T Consensus 22 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~~-~gg~~v~~~~~~ 94 (202)
T 2rop_A 22 LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLEN------KTAQVKYDPSCTSPVALQRAIEALP-PGNFKVSLPDGA 94 (202)
T ss_dssp EEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHTTSS-SSCSEEEC----
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHhc-cCCeEEEecccc
Confidence 357777776555577899999988888877764332 357788764 344445554320 011122111000
Q ss_pred hhHHHhh-hcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeC-
Q 035855 82 SREEQQF-SARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFD- 159 (456)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~- 159 (456)
....... ......................+|.|.++.-......|++.+.+.--|..+.+-.... .+.|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~------~~~v~~~~ 168 (202)
T 2rop_A 95 EGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEG------TATVLYNP 168 (202)
T ss_dssp -------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTT------EEEEEECT
T ss_pred ccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCC------EEEEEECC
Confidence 0000000 0000000000000000011345788988877767788999998887788888754432 6889995
Q ss_pred ---CHHHHHHHHHHcCC
Q 035855 160 ---TEDAVDRVLQKTFH 173 (456)
Q Consensus 160 ---s~eaa~aal~~~~~ 173 (456)
+.+++.++|+....
T Consensus 169 ~~~~~~~i~~~i~~~Gy 185 (202)
T 2rop_A 169 AVISPEELRAAIEDMGF 185 (202)
T ss_dssp TTCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCC
Confidence 35667777777653
No 490
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=21.75 E-value=67 Score=25.00 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=38.7
Q ss_pred EEEcCCCccCcHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCc
Q 035855 8 LFIGGISWETSEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHS 69 (456)
Q Consensus 8 LfVgnLP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~ 69 (456)
||+=-||.+++-++|++-+..-=.+.+..+...+.. +.+- +..+.++.+.||+.+.+
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde--~~g~---~i~sD~dl~~aiqrn~K 79 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFD--GSGE---EIKTDSQVSNIIQAKLK 79 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSS--SCCS---CCCSHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCC--CCCC---cccCHHHHHHHHHhcCe
Confidence 888899999999999987764333333333332222 2222 88899999999986553
No 491
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=21.66 E-value=1.2e+02 Score=22.51 Aligned_cols=56 Identities=7% Similarity=0.272 Sum_probs=39.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCceeEEEEeecCCCCCcceEEEEEeCC----HHHHHHHHHHc
Q 035855 110 KKIFVGGLPPTLTEDGFRQYFEAYGHVTDVVIMYDQNTQRPRGFGFISFDT----EDAVDRVLQKT 171 (456)
Q Consensus 110 ~~LfV~nLp~~~teedL~~~F~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s----~eaa~aal~~~ 171 (456)
.+|.|.++.-......|++.+.+.--|..+.+-.... .+.|+|+. .+++.++|+..
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~------~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENR------SAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTT------EEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCC------EEEEEECCCCCCHHHHHHHHHhc
Confidence 4677877765555677888888877788888754432 68899853 45666777665
No 492
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=21.54 E-value=2.7e+02 Score=22.43 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhc------CceeEEEEeecCCC----CCcce---EEEEEeCCHHHHHHH
Q 035855 112 IFVGGLPPTLTEDGFRQYFEAY------GHVTDVVIMYDQNT----QRPRG---FGFISFDTEDAVDRV 167 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F~~f------G~V~~v~i~~d~~t----g~~rG---fAFV~F~s~eaa~aa 167 (456)
|.+-.|..++++++++++.+.+ -.|+.+.+-.+..+ ...++ .-+++|+++++.++-
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~Y 92 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKRY 92 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHHH
Confidence 4444588888888766655443 34566776555442 12333 345678998887654
No 493
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.48 E-value=43 Score=26.63 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=37.9
Q ss_pred EEEEEeCCHHHHHHHHHcCCcCCC---ceEEEEecchhHHHhhhcccCCCCCCCCCCCCCcccccEEEEcCCCCCCCHHH
Q 035855 49 FGFVVFADPSILDRVLQDKHSLDG---RTVEAKRAMSREEQQFSARSGNTNSGRSNGGGGTIRTKKIFVGGLPPTLTEDG 125 (456)
Q Consensus 49 faFVeF~d~e~A~kAl~~~~~l~G---r~I~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LfV~nLp~~~teed 125 (456)
|+++.|+-+.++.+-|+....|+. |.+.++.... ..-..+|| |.+++++++
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~M------------------------r~YE~m~I--l~P~l~ee~ 60 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTP------------------------GRYEVNIV--LNPNLDQSQ 60 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSSS------------------------SCEEEEEE--CCSSCCHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhhh------------------------hhhheeee--eCCCCCHHH
Confidence 789999988888777774333333 4444433210 12355777 778899998
Q ss_pred HHHHHHhc
Q 035855 126 FRQYFEAY 133 (456)
Q Consensus 126 L~~~F~~f 133 (456)
++++.++|
T Consensus 61 ~~~~ve~~ 68 (96)
T 2kjw_A 61 LALEKEII 68 (96)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777766
No 494
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=21.35 E-value=1.1e+02 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.159 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHH-HhcCceeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHHcC
Q 035855 112 IFVGGLPPTLTEDGFRQYF-EAYGHVTDVVIMYDQNTQRPRGFGFISFDTEDAVDRVLQKTF 172 (456)
Q Consensus 112 LfV~nLp~~~teedL~~~F-~~fG~V~~v~i~~d~~tg~~rGfAFV~F~s~eaa~aal~~~~ 172 (456)
||+-.||.+++-++|++-. .+.- +.++.++..+. .+.|. +..+-++++.||+.+.
T Consensus 23 IiAIrvP~di~~~~L~dKi~~RLk-~~~~~l~~ykd--e~~g~---~i~sD~dl~~aiqrn~ 78 (85)
T 1ip9_A 23 IFALMLKGDTTYKELRSKIAPRID-TDNFKLQTKLF--DGSGE---EIKTDSQVSNIIQAKL 78 (85)
T ss_dssp CEEEEECSCCCHHHHHHHHHHHHT-SSCEEEEECCS--SSCCS---CCCSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc-ccceEEEEecC--CCCCC---cccCHHHHHHHHHhcC
Confidence 7888899999999999655 4432 33333332222 22223 8888999999998764
No 495
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.33 E-value=2e+02 Score=23.12 Aligned_cols=58 Identities=0% Similarity=-0.074 Sum_probs=35.2
Q ss_pred EEEEcCCCccCcHHHHHHHHhc-------CCCeeEEEEeecCCCCCcceE---EEEEeCCHHHHHHHHH
Q 035855 7 KLFIGGISWETSEERLREYFSQ-------YGDVLQTVVMREKTTGRPRGF---GFVVFADPSILDRVLQ 65 (456)
Q Consensus 7 ~LfVgnLP~~vtee~L~e~F~~-------~G~V~~v~i~~d~~tg~srGf---aFVeF~d~e~A~kAl~ 65 (456)
.|.+=.|..+++++++.++.+. ...|+.+.+=.+.. .+.++| -.++|++.++-+.-+.
T Consensus 24 HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 24 HIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 3444567778888876666653 34566766666543 343444 3456787777665554
No 496
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=20.99 E-value=4.3e+02 Score=23.44 Aligned_cols=59 Identities=3% Similarity=0.010 Sum_probs=34.7
Q ss_pred EEEcCCCccCcH---HHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcCCcCCCceEEEEe
Q 035855 8 LFIGGISWETSE---ERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDKHSLDGRTVEAKR 79 (456)
Q Consensus 8 LfVgnLP~~vte---e~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~~~l~Gr~I~v~~ 79 (456)
|++..||.+.++ ++|++++++++-... .+.. ..+.+.+..+++|+.-..+.-+.|.+..
T Consensus 49 l~~~~~~~~~~~~~~~~~~~~l~~~gl~i~--~~~~-----------~~~~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 49 IKDFHLPLNSTDEQIRAFHDKCAAHKVTGY--AVGP-----------IYMKSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp ECTTTSCTTCCHHHHHHHHHHHHHTTCEEE--EEEE-----------EEECSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EecccCCCCCCHHHHHHHHHHHHHcCCeEE--EEec-----------cccCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 333445656665 577778888875322 2111 1116777888888766666666776653
No 497
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.94 E-value=1e+02 Score=26.65 Aligned_cols=45 Identities=4% Similarity=0.135 Sum_probs=29.4
Q ss_pred CCCCCCCHHHHHHHHHh-cC-ceeEEEEeecCCCCCcceEEEEEeCCHHH
Q 035855 116 GLPPTLTEDGFRQYFEA-YG-HVTDVVIMYDQNTQRPRGFGFISFDTEDA 163 (456)
Q Consensus 116 nLp~~~teedL~~~F~~-fG-~V~~v~i~~d~~tg~~rGfAFV~F~s~ea 163 (456)
.+...++..+|++.+++ |+ .|..|..+..+. +. =-|+|++....+
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~--KKAyV~L~~~~d 141 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-GK--KKAYVKLTPDYD 141 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-SS--EEEEEEECTTSC
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-Cc--eEEEEEcCCCCc
Confidence 35678888999988877 44 466666554332 11 159999976533
No 498
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.78 E-value=76 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=28.4
Q ss_pred cHHHHHHHHhcCCCeeEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHcC
Q 035855 18 SEERLREYFSQYGDVLQTVVMREKTTGRPRGFGFVVFADPSILDRVLQDK 67 (456)
Q Consensus 18 tee~L~e~F~~~G~V~~v~i~~d~~tg~srGfaFVeF~d~e~A~kAl~~~ 67 (456)
..++|++||+.|=..+ . .|-+.+..|.+.+.|.++|++.
T Consensus 131 ~l~~i~~fF~~YK~le---------~--gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE---------K--GKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHTTTTS---------T--TCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc---------C--CCcEEEccCcCHHHHHHHHHHH
Confidence 4578999999984332 1 1236778899999999998753
No 499
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.76 E-value=1.6e+02 Score=23.76 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=27.7
Q ss_pred ccCcHHHHHHHHhcC-CCeeEEEEee----cCCCCCcceEEEEEeCCHHHHHHH
Q 035855 15 WETSEERLREYFSQY-GDVLQTVVMR----EKTTGRPRGFGFVVFADPSILDRV 63 (456)
Q Consensus 15 ~~vtee~L~e~F~~~-G~V~~v~i~~----d~~tg~srGfaFVeF~d~e~A~kA 63 (456)
..++..+|++.+.+. ..-.+++++. .-..+++.|||.| |.|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 356788888877643 3222222222 2224577788866 7777776654
No 500
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=20.39 E-value=3e+02 Score=25.67 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCccCcHHHHHHHHhcCCCeeEEEEeecCCCC------CcceEEEEEeCCHHHHHHHHH
Q 035855 13 ISWETSEERLREYFSQYGDVLQTVVMREKTTG------RPRGFGFVVFADPSILDRVLQ 65 (456)
Q Consensus 13 LP~~vtee~L~e~F~~~G~V~~v~i~~d~~tg------~srGfaFVeF~d~e~A~kAl~ 65 (456)
||+.++++||+.+-+...+-.++.++.++.+- .+.=+|+|.-.-.++.++.|+
T Consensus 75 vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~ 133 (248)
T 4a18_J 75 VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIA 133 (248)
T ss_dssp ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHH
T ss_pred eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHH
Confidence 47789999999886665444456656554432 122377887665566666665
Done!