BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035856
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/352 (34%), Positives = 173/352 (49%), Gaps = 87/352 (24%)
Query: 6 NIRVYDVEDGVPMKYASTESNPLEAVELFVKATPENFKKGLDAAVSKTGRKISCFLTDAF 65
NI+ YD+ DGVP Y P E +ELF +A PE+F++G+ AV++TGR +SC + DAF
Sbjct: 63 NIKSYDISDGVPEGYVFA-GRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAF 121
Query: 66 LTFSGEMARDMHIPWFPVFVAMPYNGSAHIHTDLIHQFF----INNCEE----------- 110
+ F+ +MA +M + W P + A P + S H++ D I + I E+
Sbjct: 122 IWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSK 181
Query: 111 ----------------SLFSSMLSKLGGVLPQASAAVMNFYQELYCSSQLTNDLNSKVPS 154
SLFS ML ++G VLP+A+A +N ++EL LTNDL SK+ +
Sbjct: 182 VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL--DDSLTNDLKSKLKT 239
Query: 155 LLKVGFLTQXXXXXXXXXSDSDETGYLQWLDRQKPKS----------------------- 191
L +G + TG LQWL +KP S
Sbjct: 240 YLNIGPFNLITPPPVV----PNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEA 295
Query: 192 --------------------------RTSGRGKIVLQAPQTQVLGHFSIGVFVIHSGANS 225
+T G G +V APQ +VL H ++G FV H G NS
Sbjct: 296 LEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNS 355
Query: 226 VCESIANGVLMICRPFYGDHRMNARMVEEVWGIGVKVEGILLTKSGVLQSLD 277
+ ES+A GV +ICRPF+GD R+N RMVE+V IGV++EG + TKSG++ D
Sbjct: 356 LWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFD 407
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 183 bits (465), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 119/350 (34%), Positives = 170/350 (48%), Gaps = 84/350 (24%)
Query: 6 NIRVYDVEDGVPMKYASTESNPLEAVELFVKATPENFKKGLDAAVSKTGRKISCFLTDAF 65
NI+ Y+V DG+P Y S+ NP E + LF+KA ENFK +D AV++TG+ I+C +TDAF
Sbjct: 68 NIKYYNVHDGLPKGYVSS-GNPREPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAF 126
Query: 66 LTFSGEMARDMHIPWFPVFVAMPYNGSAHIHTDLIH---------------------QFF 104
F ++A +MH W P++ A P++ H++TDLI +
Sbjct: 127 FWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELK 186
Query: 105 INNCEESL-------FSSMLSKLGGVLPQASAAVMNFYQELYCSSQLTNDLNSKVPSLLK 157
++ E + F++ML K+G LP+A+A +N + ++ + N+LNSK LL
Sbjct: 187 ASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIH--PLIENELNSKFKLLLN 244
Query: 158 VGFLTQXXXXXXXXXSDSDETGYLQWLD-------------------------------- 185
VG SDE G L+WLD
Sbjct: 245 VGPFNLTTPQRKV----SDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEE 300
Query: 186 ---------RQKPK--------SRTSGRGKIVLQAPQTQVLGHFSIGVFVIHSGANSVCE 228
R PK RT +GKIV APQ ++L H S+GVF+ HSG NSV E
Sbjct: 301 CGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLE 360
Query: 229 SIANGVLMICRPFYGDHRMNARMVEEVWGIGVKVEGILLTKSGVLQSLDL 278
I GV MI RPF+GD +N + E V IGV V+ +LTK + ++L+L
Sbjct: 361 CIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALEL 410
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 191 SRTSGRGKIVLQAPQTQVLGHFSIGVFVIHSGANSVCESIANGVLMICRPFYGDHRMNAR 250
+ + RG I PQ +VL H SIG F+ H G NS ESI GV M+C PF+ D + R
Sbjct: 349 NEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCR 408
Query: 251 MVEEVWGIGVKVE 263
+ W IG++++
Sbjct: 409 FICNEWEIGMEID 421
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Query: 179 GYLQWLDRQKPKSRTSGRGKIVLQAPQTQVLGHFSIGVFVIHSGANSVCESIANGVLMIC 238
G+L+W++ + G+G I APQ +VL H +IG FV H G NS+ ES+ GV ++
Sbjct: 323 GFLEWMELE-------GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILT 375
Query: 239 RPFYGDHRMNA-RMVEEVWGIGV 260
P Y + ++NA R+V+E WG+G+
Sbjct: 376 WPIYAEQQLNAFRLVKE-WGVGL 397
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Query: 179 GYLQWLDRQKPKSRTSGRGKIVLQAPQTQVLGHFSIGVFVIHSGANSVCESIANGVLMIC 238
G+L+W++ + G+G I APQ +VL H +IG FV H G NS+ ES+ GV ++
Sbjct: 323 GFLEWMELE-------GKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILT 375
Query: 239 RPFYGDHRMNA-RMVEEVWGIGV 260
P Y + ++NA R+V+E WG+G+
Sbjct: 376 WPIYAEQQLNAFRLVKE-WGVGL 397
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 192 RTSGRGKIV-LQAPQTQVLGHFSIGVFVIHSGANSVCESIANGVLMICRPFYGDHRMNAR 250
RT RG ++ APQ QVL H S G F+ H G NS ES+ +G+ +I P Y + +MNA
Sbjct: 335 RTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAV 394
Query: 251 MVEE 254
++ E
Sbjct: 395 LLSE 398
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 204 PQTQVLGHFSIGVFVIHSGANSVCESIANGVLMICRPFYGDHRMNARMVEEVWGIGVKVE 263
PQ +LGH F+ H GAN + E+I +G+ + P + D N + G V+V+
Sbjct: 77 PQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHX-KARGAAVRVD 135
Query: 264 GILLTKSGVLQSL 276
+ + +L +L
Sbjct: 136 FNTXSSTDLLNAL 148
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 204 PQTQVLGHFSIGVFVIHSGANSVCESIANGVLMICRPFYGDHRMNARMVEEVWGIG 259
PQ +L S F+ H+G S E+++N V M+ P + MNA + E+ G+G
Sbjct: 314 PQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL-GLG 366
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 76 MHIPWFPVFVAMPYNGSAHIHTDLIHQFFINNCEESLFSSMLSKLGGVLPQASAAVMN 133
+H+ W + A NG A +HT++I + + +K GV P+ ++N
Sbjct: 393 VHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMIN 450
>pdb|3QFM|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFM|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH
pdb|3QFN|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFN|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IN COMPLEX
WITH INORGANIC PHOSPHATE
pdb|3QFO|A Chain A, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
pdb|3QFO|B Chain B, Crystal Structure Of Streptococcal Asymmetric Ap4a
Hydrolase And Phosphodiesterase Spr1479SAPH IM COMPLEX
WITH AMP
Length = 270
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 71 EMARDMHIPWFPVFVAMPYNGSAHIHTDLIHQFFINN 107
++A+D+ +P+F V+ NG H H HQ F+
Sbjct: 238 QLAKDLRLPYFEVYYESLVNGIHHTH----HQEFLRE 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,817,139
Number of Sequences: 62578
Number of extensions: 294612
Number of successful extensions: 725
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 17
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)