BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035857
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 171/402 (42%), Gaps = 49/402 (12%)
Query: 12 LEELDLSYNSLTGTIPAEIGSLR-NLLKLDLTNNILNGSI-PLEFGNLKD-LDELRLQGN 68
L+ LDLS+N +G +P + +L +LL LDL++N +G I P N K+ L EL LQ N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 69 KLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTGPIPSTLYH 128
G IP + +G IPS+L
Sbjct: 405 GFTGKIP------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 129 LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYN 188
L++LR L L N L G +P+E+ +K L+TL+L+ N LTG IPS L + L + L+ N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 189 NLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGX 248
L G + K +G +G+IP+ +G L LDL+ N +G IP +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 249 XXXXXXXXXXXXX----------------------XXGLLPREVRNLKYLASLSLNGNNL 286
G+ ++ L ++
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 287 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLI 346
G PT ++ L++ YN L+ IP E+ + IP E+G+L
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 347 HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPK 388
L LDLS N ++G IP + +T ++E+D+S NNLSG IP+
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 161/395 (40%), Gaps = 55/395 (13%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G S L+ LD+S N L+G I + L L++++N G IP LK L L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 66 QGNKLDGLIPXXXXXXXXXXXXXXXXXXXXX-XXPQEVGXXXXXXXXXXXXXXXTGPIP- 123
NK G IP P G +G +P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 124 STLYHLNQLRVLFLAYNNLVGPLPREVGNMK-NLKTLLLNRNSLTGPIPSTLYH--LNQL 180
TL + L+VL L++N G LP + N+ +L TL L+ N+ +GPI L N L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 181 RILYLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDG 240
+ LYL N TG IP T+ + L L LS N L G
Sbjct: 397 QELYLQNNGF------------------------TGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 241 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNL 300
IP ++G G +P+E+ +K L +L L+ N+L G IP + TNL
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 301 TSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFING 360
++L N+L IP IG L +L L LS+N +G
Sbjct: 493 NWISLSNNRLTGEIP------------------------KWIGRLENLAILKLSNNSFSG 528
Query: 361 TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG 395
IP++LG ++ +D++ N +G IP ++ + G
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 135/337 (40%), Gaps = 46/337 (13%)
Query: 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+IP + S+L L LS+N L+GTIP+ +GSL L L L N+L G IP E +K L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 61 DELRLQGNKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTG 120
+ L L N L G I P + TG
Sbjct: 469 ETLILDFNDLTGEI------------------------PSGLSNCTNLNWISLSNNRLTG 504
Query: 121 PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLY----- 175
IP + L L +L L+ N+ G +P E+G+ ++L L LN N G IP+ ++
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564
Query: 176 ----HLNQLRILYLAYNNL-------------VGPLSKEVGXXXXXXXXXXXXXXXTGSI 218
+ R +Y+ + + G S+++ G
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 219 PSTIGYLNLLDELDLSHNRLDGPIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLAS 278
T + LD+S+N L G IP IG G +P EV +L+ L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 279 LSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 315
L L+ N L G IP + LT LT ++L N L+ IP
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 162/415 (39%), Gaps = 27/415 (6%)
Query: 9 LSKLEELDLSYNSLTGTIPAEI-GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQG 67
L L+ L L+ N TG IP + G+ L LDL+ N G++P FG+ L+ L L
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 68 NKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQE--VGXXXXXXXXXXXXXXXTGPIPST 125
N G +P E +GPI
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 126 LYH--LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRIL 183
L N L+ L+L N G +P + N L +L L+ N L+G IPS+L L++LR L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 184 YLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDGPIP 243
L N L G + +E+ TG IPS + L+ + LS+NRL G IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 244 PTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSL 303
IG G +P E+ + + L L LN N G IP + + +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 304 NLGYNQLNSSIPPELMN--CXXXXXXXXXXXXXXXXI-------PSEIGNLIH------- 347
N + I + M C + P I + ++
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 348 ------LRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGL 396
+ LD+S+N ++G IP ++G + + +++ N++SG IP V + GL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 113/296 (38%), Gaps = 32/296 (10%)
Query: 132 LRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV 191
L L ++ NN +P +G+ L+ L ++ N L+G + +L++L ++ N V
Sbjct: 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 192 GPLSKEVGXXXXXXXXXXXXXXXTGSIPSTI-GYLNLLDELDLSHNRLDGPIPPTIGXXX 250
GP+ TG IP + G + L LDLS N G +PP G
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 251 XXXXXXXXXXXXXGLLPRE----VRNLKYLA----------------------SLSLNGN 284
G LP + +R LK L +L L+ N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 285 NLIGPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEI 342
N GPI P + L L L N IPP L NC IPS +
Sbjct: 379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438
Query: 343 GNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLKW 398
G+L LR L L N + G IP +L + + + + N+L+G IP + L W
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 113/277 (40%), Gaps = 31/277 (11%)
Query: 126 LYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYL 185
L + L+ L ++ N L G R + LK L ++ N GPIP L L+ L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 276
Query: 186 AYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTI-GYLNLLDELDLSHNRLDGPIPP 244
A N TG IP + G + L LDLS N G +PP
Sbjct: 277 AENKF------------------------TGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 245 TIGXXXXXXXXXXXXXXXXGLLPRE-VRNLKYLASLSLNGNNLIGPIPPTIGYLT-NLTS 302
G G LP + + ++ L L L+ N G +P ++ L+ +L +
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 303 LNLGYNQLNSSIPPELMN--CXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFING 360
L+L N + I P L IP + N L L LS N+++G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 361 TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397
TIPS LG ++ + ++ + N L G IP+ ++ V L+
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 103/273 (37%), Gaps = 55/273 (20%)
Query: 154 KNLKTLLLNRNSLTGPIP--STLYHLNQLRILYLAYNNLVGPLSKEVGXXXXXXXXXXXX 211
+L +L L+RNSL+GP+ ++L + L+ L ++ N L P K G
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDL 158
Query: 212 XXXTGSIPSTIGYL-----NLLDELDLSHNRLDGPIP---------------------PT 245
+ S + +G++ L L +S N++ G + P
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF 218
Query: 246 IGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305
+G G R + L L+++ N +GPIPP L +L L+L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSL 276
Query: 306 GYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQ 365
N+ IP L G L LDLS N G +P
Sbjct: 277 AENKFTGEIPDFLS-----------------------GACDTLTGLDLSGNHFYGAVPPF 313
Query: 366 LGKITNVSEVDVSKNNLSGVIP-KSVLRVPGLK 397
G + + + +S NN SG +P ++L++ GLK
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNN 44
RIP + AL+ L E+DLS N+L+G IP E+G NN
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/402 (28%), Positives = 171/402 (42%), Gaps = 49/402 (12%)
Query: 12 LEELDLSYNSLTGTIPAEIGSLR-NLLKLDLTNNILNGSI-PLEFGNLKD-LDELRLQGN 68
L+ LDLS+N +G +P + +L +LL LDL++N +G I P N K+ L EL LQ N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 69 KLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTGPIPSTLYH 128
G IP + +G IPS+L
Sbjct: 402 GFTGKIP------------------------PTLSNCSELVSLHLSFNYLSGTIPSSLGS 437
Query: 129 LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYN 188
L++LR L L N L G +P+E+ +K L+TL+L+ N LTG IPS L + L + L+ N
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 189 NLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGX 248
L G + K +G +G+IP+ +G L LDL+ N +G IP +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 249 XXXXXXXXXXXXX----------------------XXGLLPREVRNLKYLASLSLNGNNL 286
G+ ++ L ++
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 287 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLI 346
G PT ++ L++ YN L+ IP E+ + IP E+G+L
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 347 HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPK 388
L LDLS N ++G IP + +T ++E+D+S NNLSG IP+
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 161/395 (40%), Gaps = 55/395 (13%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G S L+ LD+S N L+G I + L L++++N G IP LK L L L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273
Query: 66 QGNKLDGLIPXXXXXXXXXXXXXX-XXXXXXXXXPQEVGXXXXXXXXXXXXXXXTGPIP- 123
NK G IP P G +G +P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 124 STLYHLNQLRVLFLAYNNLVGPLPREVGNMK-NLKTLLLNRNSLTGPIPSTLYH--LNQL 180
TL + L+VL L++N G LP + N+ +L TL L+ N+ +GPI L N L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 181 RILYLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDG 240
+ LYL N TG IP T+ + L L LS N L G
Sbjct: 394 QELYLQNNGF------------------------TGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 241 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNL 300
IP ++G G +P+E+ +K L +L L+ N+L G IP + TNL
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 301 TSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFING 360
++L N+L IP IG L +L L LS+N +G
Sbjct: 490 NWISLSNNRLTGEIP------------------------KWIGRLENLAILKLSNNSFSG 525
Query: 361 TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG 395
IP++LG ++ +D++ N +G IP ++ + G
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 135/337 (40%), Gaps = 46/337 (13%)
Query: 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+IP + S+L L LS+N L+GTIP+ +GSL L L L N+L G IP E +K L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 61 DELRLQGNKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTG 120
+ L L N L G I P + TG
Sbjct: 466 ETLILDFNDLTGEI------------------------PSGLSNCTNLNWISLSNNRLTG 501
Query: 121 PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLY----- 175
IP + L L +L L+ N+ G +P E+G+ ++L L LN N G IP+ ++
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 561
Query: 176 ----HLNQLRILYLAYNNL-------------VGPLSKEVGXXXXXXXXXXXXXXXTGSI 218
+ R +Y+ + + G S+++ G
Sbjct: 562 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 621
Query: 219 PSTIGYLNLLDELDLSHNRLDGPIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLAS 278
T + LD+S+N L G IP IG G +P EV +L+ L
Sbjct: 622 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 681
Query: 279 LSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 315
L L+ N L G IP + LT LT ++L N L+ IP
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 106/415 (25%), Positives = 162/415 (39%), Gaps = 27/415 (6%)
Query: 9 LSKLEELDLSYNSLTGTIPAEI-GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQG 67
L L+ L L+ N TG IP + G+ L LDL+ N G++P FG+ L+ L L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 68 NKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQE--VGXXXXXXXXXXXXXXXTGPIPST 125
N G +P E +GPI
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 126 LYH--LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRIL 183
L N L+ L+L N G +P + N L +L L+ N L+G IPS+L L++LR L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 184 YLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLDGPIP 243
L N L G + +E+ TG IPS + L+ + LS+NRL G IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 244 PTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSL 303
IG G +P E+ + + L L LN N G IP + + +
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 304 NLGYNQLNSSIPPELMN--CXXXXXXXXXXXXXXXXI-------PSEIGNLIH------- 347
N + I + M C + P I + ++
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 348 ------LRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGL 396
+ LD+S+N ++G IP ++G + + +++ N++SG IP V + GL
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 113/296 (38%), Gaps = 32/296 (10%)
Query: 132 LRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV 191
L L ++ NN +P +G+ L+ L ++ N L+G + +L++L ++ N V
Sbjct: 199 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 192 GPLSKEVGXXXXXXXXXXXXXXXTGSIPSTI-GYLNLLDELDLSHNRLDGPIPPTIGXXX 250
GP+ TG IP + G + L LDLS N G +PP G
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 251 XXXXXXXXXXXXXGLLPRE----VRNLKYLA----------------------SLSLNGN 284
G LP + +R LK L +L L+ N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 285 NLIGPIPPTIGY--LTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEI 342
N GPI P + L L L N IPP L NC IPS +
Sbjct: 376 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 435
Query: 343 GNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLKW 398
G+L LR L L N + G IP +L + + + + N+L+G IP + L W
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 113/277 (40%), Gaps = 31/277 (11%)
Query: 126 LYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYL 185
L + L+ L ++ N L G R + LK L ++ N GPIP L L+ L L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSL 273
Query: 186 AYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTI-GYLNLLDELDLSHNRLDGPIPP 244
A N TG IP + G + L LDLS N G +PP
Sbjct: 274 AENKF------------------------TGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 245 TIGXXXXXXXXXXXXXXXXGLLPRE-VRNLKYLASLSLNGNNLIGPIPPTIGYLT-NLTS 302
G G LP + + ++ L L L+ N G +P ++ L+ +L +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 303 LNLGYNQLNSSIPPELMN--CXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFING 360
L+L N + I P L IP + N L L LS N+++G
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 361 TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397
TIPS LG ++ + ++ + N L G IP+ ++ V L+
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 103/273 (37%), Gaps = 55/273 (20%)
Query: 154 KNLKTLLLNRNSLTGPIP--STLYHLNQLRILYLAYNNLVGPLSKEVGXXXXXXXXXXXX 211
+L +L L+RNSL+GP+ ++L + L+ L ++ N L P K G
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDL 155
Query: 212 XXXTGSIPSTIGYL-----NLLDELDLSHNRLDGPIP---------------------PT 245
+ S + +G++ L L +S N++ G + P
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF 215
Query: 246 IGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305
+G G R + L L+++ N +GPIPP L +L L+L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSL 273
Query: 306 GYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQ 365
N+ IP L G L LDLS N G +P
Sbjct: 274 AENKFTGEIPDFLS-----------------------GACDTLTGLDLSGNHFYGAVPPF 310
Query: 366 LGKITNVSEVDVSKNNLSGVIP-KSVLRVPGLK 397
G + + + +S NN SG +P ++L++ GLK
Sbjct: 311 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNN 44
RIP + AL+ L E+DLS N+L+G IP E+G NN
Sbjct: 692 RIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 734
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 4/222 (1%)
Query: 169 PIPSTLYHLNQLRILYLA-YNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNL 227
PIPS+L +L L LY+ NNLVGP+ + +G+IP + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 228 LDELDLSHNRLDGPIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNL-KYLASLSLNGNNL 286
L LD S+N L G +PP+I G +P + K S++++ N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 287 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXXXXXIPSEIGNLI 346
G IPPT L NL ++L N L L ++G
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 347 HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPK 388
+L LDL +N I GT+P L ++ + ++VS NNL G IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 25/125 (20%)
Query: 266 LPREVRNLKYLASLSLNG-NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXX 324
+P + NL YL L + G NNL+GPIPP I LT L L + + ++ +IP L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL------ 121
Query: 325 XXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384
S+I L+ LD S+N ++GT+P + + N+ + N +SG
Sbjct: 122 ---------------SQIKTLV---TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 385 VIPKS 389
IP S
Sbjct: 164 AIPDS 168
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 85/214 (39%), Gaps = 47/214 (21%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLD 61
IP I L++L L +++ +++G IP + ++ L+ LD + N L+G++P +L +L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 62 ELRLQGNKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTGP 121
+ GN++ G IP TG
Sbjct: 153 GITFDGNRISGAIPDSYG-----------------------SFSKLFTSMTISRNRLTGK 189
Query: 122 IPSTLYHLN-------------QLRVLF----------LAYNNLVGPLPREVGNMKNLKT 158
IP T +LN VLF LA N+L L + VG KNL
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248
Query: 159 LLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVG 192
L L N + G +P L L L L +++NNL G
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 78/198 (39%), Gaps = 27/198 (13%)
Query: 119 TGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLN 178
+G IP L + L L +YN L G LP + ++ NL + + N ++G IP + +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 179 QLRI-LYLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNR 237
+L + ++ N L TG IP T LNL +DLS N
Sbjct: 174 KLFTSMTISRNRL------------------------TGKIPPTFANLNLA-FVDLSRNM 208
Query: 238 LDGPIPPTIGXXXXXXXXXXXXXXXXGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYL 297
L+G G L + V K L L L N + G +P + L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 298 TNLTSLNLGYNQLNSSIP 315
L SLN+ +N L IP
Sbjct: 268 KFLHSLNVSFNNLCGEIP 285
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 94/244 (38%), Gaps = 28/244 (11%)
Query: 2 IPSEIGALSKLEELDLS-YNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
IPS + L L L + N+L G IP I L L L +T+ ++G+IP +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 61 DELRLQGNKLDGLIPXXXXXXXXXXXXXXXXXXXXXXXPQEVGXXXXXXXXXXXXXXXTG 120
L N L G +P P VG +G
Sbjct: 128 VTLDFSYNALSGTLP-----------------PSISSLPNLVG-------ITFDGNRISG 163
Query: 121 PIPSTLYHLNQLRV-LFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQ 179
IP + ++L + ++ N L G +P N+ NL + L+RN L G
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 180 LRILYLAYNNLVGPLSKEVGXXXXXXXXXXXXXXXTGSIPSTIGYLNLLDELDLSHNRLD 239
+ ++LA N+L L K VG G++P + L L L++S N L
Sbjct: 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 240 GPIP 243
G IP
Sbjct: 282 GEIP 285
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELR 64
++G L LDL N + GT+P + L+ L L+++ N L G IP + GNL+ D
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297
Query: 65 LQGNKL 70
NK
Sbjct: 298 YANNKC 303
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+P+EI LS L LDLS+N LT ++PAE+GS L +N++ ++P EFGNL +L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL 318
Query: 61 DELRLQGNKLD 71
L ++GN L+
Sbjct: 319 QFLGVEGNPLE 329
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 122 IPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLR 181
I + ++ + L L+L N+L LP E+ N+ NL+ L L+ N LT +P+ L QL+
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 182 ILYLAYNNLVGPLSKEVG 199
Y ++N+V L E G
Sbjct: 297 YFYF-FDNMVTTLPWEFG 313
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 275 YLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXXXXX 334
+L L LNGN+L +P I L+NL L+L +N+L +S+P EL +C
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSC-FQLKYFYFFDNM 304
Query: 335 XXXIPSEIGNLIHLRQL 351
+P E GNL +L+ L
Sbjct: 305 VTTLPWEFGNLCNLQFL 321
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 338 IPSEIGNLIHLRQLDLSHNFINGTIPSQLG 367
+P+EI NL +LR LDLSHN + ++P++LG
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFINGT-IPSQLGKITNVSEVDVSKNNLSGV 385
IG LI L++L+++HNFI+ +P+ +TN+ VD+S N + +
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFINGT-IPSQLGKITNVSEVDVSKNNLSGV 385
IG LI L++L+++HNFI+ +P+ +TN+ VD+S N + +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLD 71
+ E+ L N++ P + L ++DL+NN ++ P F L+ L+ L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 72 GL 73
L
Sbjct: 94 EL 95
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLD 71
+ E+ L N++ P + L ++DL+NN ++ P F L+ L+ L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 72 GL 73
L
Sbjct: 94 EL 95
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 272
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 273 GANQISNISP 282
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 235
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 236 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 279 NISPLAGLTALTNLELNENQLE 300
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 216 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 271
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 272 GANQISNISP 281
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 187 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 234
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 235 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 277
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 278 NISPLAGLTALTNLELNENQLE 299
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 212 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 267
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 268 GANQISNISP 277
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 230
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 231 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 273
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 274 NISPLAGLTALTNLELNENQLE 295
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 213 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 268
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 269 GANQISNISP 278
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 231
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 232 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 275 NISPLAGLTALTNLELNENQLE 296
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 213 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 268
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 269 GANQISNISP 278
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 231
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 232 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 275 NISPLAGLTALTNLELNENQLE 296
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 213 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 268
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 269 GANQISNISP 278
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 231
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 232 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 274
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 275 NISPLAGLTALTNLELNENQLE 296
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+G L+ L+EL L+ N L + SL NL LDL NN ++ PL L L EL+L
Sbjct: 212 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKL 267
Query: 66 QGNKLDGLIP 75
N++ + P
Sbjct: 268 GANQISNISP 277
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 35/142 (24%)
Query: 269 EVRNLKYLASLS-----LNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXX 323
+V ++ LA L+ + NN I I P +G LTNL L+L NQL
Sbjct: 183 KVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD----------- 230
Query: 324 XXXXXXXXXXXXXXIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383
+ +L +L LDL++N I+ P L +T ++E+ + N +S
Sbjct: 231 ---------------IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 273
Query: 384 GVIPKSVLRV-PGLKWSENNLE 404
+ P + L L+ +EN LE
Sbjct: 274 NISPLAGLTALTNLELNENQLE 295
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+ AL +LEEL+LS N L P L +L KL L + + F +LK L+EL L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 66 QGNKLDGL 73
N L L
Sbjct: 234 SHNNLMSL 241
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
+ AL +LEEL+LS N L P L +L KL L + + F +LK L+EL L
Sbjct: 174 LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNL 233
Query: 66 QGNKLDGL 73
N L L
Sbjct: 234 SHNNLMSL 241
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 ALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLE-FGNLKDLDELRLQ 66
L+KL L+L YN L L L L L NN L S+PL F +L LD+L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 67 GNKLDGL 73
GN+L L
Sbjct: 116 GNQLKSL 122
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 8 ALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLE-FGNLKDLDELRLQ 66
L+KL L+L YN L L L L L NN L S+PL F +L LD+L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLG 115
Query: 67 GNKLDGL 73
GN+L L
Sbjct: 116 GNQLKSL 122
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 9 LSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGN 68
L KL+ELDLS N L+ P L +L KL + + + F NL+ L E+ L N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 69 KL 70
L
Sbjct: 266 NL 267
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGV 385
IG+L L++L+++HN I +P +TN+ +D+S N + +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 156 LSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGV 385
IG+L L++L+++HN I +P +TN+ +D+S N + +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 SEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDE 62
S + +L KL L+ + SL P IG L+ L +L++ +N++ +P F NL +L+
Sbjct: 99 SGLSSLQKLVALETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 155
Query: 63 LRLQGNKLDGL 73
L L NK+ +
Sbjct: 156 LDLSSNKIQSI 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGV 385
IG+L L++L+++HN I +P +TN+ +D+S N + +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 158 LSSNKIQSI 166
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGV 385
IG+L L++L+++HN I +P +TN+ +D+S N + +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 157 LSSNKIQSI 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGV 385
IG+L L++L+++HN I +P +TN+ +D+S N + +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 157 LSSNKIQSI 165
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRV 393
IG+L L++L+++HN I +P +TN+ +D+S N + + LRV
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRV 171
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIG-SLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+ S L +LE LD +++L + SLRNL+ LD+++ + F L L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 61 DELRLQGNKL 70
+ L++ GN
Sbjct: 448 EVLKMAGNSF 457
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 156 LSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRV 393
IG+L L++L+++HN I +P +TN+ +D+S N + + LRV
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRV 195
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIG-SLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+ S L +LE LD +++L + SLRNL+ LD+++ + F L L
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 61 DELRLQGNKL 70
+ L++ GN
Sbjct: 472 EVLKMAGNSF 481
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 180 LSSNKIQSI 188
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 342 IGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRV 393
IG+L L++L+++HN I +P +TN+ +D+S N + + LRV
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRV 171
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLT-GTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELR 64
LS LE L ++ NS +P LRNL LDL+ L P F +L L L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 65 LQGNKLDGL 73
+ N+L +
Sbjct: 501 MASNQLKSV 509
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIG-SLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+ S L +LE LD +++L + SLRNL+ LD+++ + F L L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 61 DELRLQGNKL 70
+ L++ GN
Sbjct: 448 EVLKMAGNSF 457
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELR 64
LS L++L +L IG L+ L +L++ +N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 65 LQGNKLDGL 73
L NK+ +
Sbjct: 156 LSSNKIQSI 164
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 276 LASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 312
LA L L+ N L P LT LT L+LGYN+L S
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLD 61
+P I ++L LDL N + E S +L +L+L NI++ P F NL +L
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83
Query: 62 ELRLQGNKLDGLIP 75
L L+ N+L LIP
Sbjct: 84 TLGLRSNRLK-LIP 96
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 12/138 (8%)
Query: 272 NLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXXXXXX 331
N++YLA L GN L + LTNLT L L NQL S+P + +
Sbjct: 64 NVRYLA---LGGNKLHDI--SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLV 117
Query: 332 XXXXXXIPSEIGN-LIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS----GVI 386
+P + + L +L L+L+HN + K+TN++E+D+S N L GV
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 387 PKSVLRVPGLKWSENNLE 404
K + ++ L+ +N L+
Sbjct: 178 DK-LTQLKDLRLYQNQLK 194
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
L+ L L+L++N L L NL +LDL+ N L F L L +LRL
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 66 QGNKLDGL 73
N+L +
Sbjct: 189 YQNQLKSV 196
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 268 REVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCXXXXXX 327
+E+ NL YL L GN L LTNL L L NQL S+P + +
Sbjct: 82 KELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTY 137
Query: 328 XXXXXXXXXXIPSEIGN-LIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVI 386
+P + + L +L +LDLS+N + K+T + ++ + +N L V
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 387 PKSVLRVPGLK--WSENN 402
R+ L+ W +N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 25/70 (35%)
Query: 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRL 65
L+ L ELDLSYN L L L L L N L F L L + L
Sbjct: 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212
Query: 66 QGNKLDGLIP 75
N D P
Sbjct: 213 HDNPWDCTCP 222
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 345 LIHLRQLDLSHNFINGTIPSQLGKITNVSEV-DVSKNNLSGVIPKSVLRVPGLK 397
L HL +L+LS NF+ G+I S++ + + EV D+S N++ + +S L +P LK
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLD 61
+ S + LE+L L+ N + L +LLKL+L+ N L F NL L+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 62 ELRLQGNKLDGL 73
L L N + L
Sbjct: 351 VLDLSYNHIRAL 362
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLD 61
+P E+ L +DLS N ++ ++ LL L L+ N L P F LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 62 ELRLQGNKL 70
L L GN +
Sbjct: 106 LLSLHGNDI 114
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 265 LLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 320
L+P+E+ N K+L + L+ N + + +T L +L L YN+L IPP +
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFD 99
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 3 PSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLD 61
P L L++L + N LT L L +LDL +N L SIP F NLK L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLT 108
Query: 62 ELRLQGNKLD 71
+ L N D
Sbjct: 109 HIYLYNNPWD 118
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 15 LDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGL 73
LDL N +T + +L+NL L L NN ++ P F L L+ L L N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 15 LDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGL 73
LDL N +T + +L+NL L L NN ++ P F L L+ L L N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 3 PSEIGALSKLEELDLSYNSLTGTIPAEI-GSLRNLLKLDLTNNILNGSIPL-EFGNLKDL 60
P L++L LDL N LT +PA + L L +L L +N L SIP F NLK L
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSL 112
Query: 61 DELRLQGNKLD 71
+ L N D
Sbjct: 113 THIWLLNNPWD 123
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 3 PSEIGALSKLEELDLSYNSLTGTIPAEI-GSLRNLLKLDLTNNILNGSIPL-EFGNLKDL 60
P L++L LDL N LT +PA + L L +L L +N L SIP F NLK L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSL 104
Query: 61 DELRLQGNKLD 71
+ L N D
Sbjct: 105 THIWLLNNPWD 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 125 TLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILY 184
T L L LFL N + R + +L LLL++N + P L +L LY
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 185 LAYNNL 190
L NNL
Sbjct: 208 LFANNL 213
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%)
Query: 125 TLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILY 184
T L L LFL N + R + +L LLL++N + P L +L LY
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 185 LAYNNL 190
L NNL
Sbjct: 207 LFANNL 212
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 36 LLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGL 73
L LD +NN+L ++ G+L +L+ L LQ N+L L
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 3 PSEIGALSKLEELDLSYNSLTGTIPAEI-GSLRNLLKLDLTNNILNGSIPL-EFGNLKDL 60
P L++L LDL N LT +PA + L L +L L +N L SIP F NL+ L
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLRSL 104
Query: 61 DELRLQGNKLD 71
+ L N D
Sbjct: 105 THIWLLNNPWD 115
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIG-SLRNLLKLDLTNNILNGSIPLEFGNLKDL 60
+ S L +LE LD +++L + SLRNL+ LD+++ + F L L
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152
Query: 61 DELRLQGNKLD 71
+ L++ GN
Sbjct: 153 EVLKMAGNSFQ 163
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 133 KGNELKTLPP 142
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPL-EFGNLKDLDELRL 65
G L L LDLS+N L ++P +L L LD++ N L S+PL L +L EL L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 66 QGNKLDGLIP 75
+GN+L L P
Sbjct: 132 KGNELKTLPP 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,380,742
Number of Sequences: 62578
Number of extensions: 311241
Number of successful extensions: 1209
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 459
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)