Query 035857
Match_columns 404
No_of_seqs 180 out of 2681
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.3E-45 1.4E-49 372.0 26.8 402 2-404 156-584 (968)
2 PLN00113 leucine-rich repeat r 100.0 9.8E-45 2.1E-49 370.6 26.6 399 2-401 180-604 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.2E-40 7E-45 292.1 7.0 388 8-397 49-442 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.6E-40 1.4E-44 290.1 4.6 371 10-382 78-451 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.7E-33 3.6E-38 252.0 -3.8 375 7-391 4-382 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 1E-31 2.2E-36 228.4 -7.8 387 5-403 63-540 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.4E-30 5.1E-35 231.9 -3.8 354 1-363 23-379 (1255)
8 PLN03210 Resistant to P. syrin 99.9 1.8E-24 3.9E-29 222.2 26.8 337 5-356 553-903 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 2.7E-29 5.8E-34 213.7 -8.6 380 11-403 46-517 (565)
10 PLN03210 Resistant to P. syrin 99.9 3.4E-24 7.3E-29 220.2 26.6 344 24-382 548-905 (1153)
11 KOG0618 Serine/threonine phosp 99.9 4.5E-27 9.8E-32 219.4 -7.0 377 7-403 42-464 (1081)
12 KOG0618 Serine/threonine phosp 99.9 1.7E-26 3.7E-31 215.6 -5.3 378 2-396 60-502 (1081)
13 KOG4237 Extracellular matrix p 99.9 6.7E-25 1.5E-29 186.6 -6.1 377 11-396 68-490 (498)
14 KOG4237 Extracellular matrix p 99.8 2.6E-23 5.6E-28 177.0 -6.1 360 2-380 82-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 3E-18 6.4E-23 164.9 15.6 266 83-392 202-467 (788)
16 cd00116 LRR_RI Leucine-rich re 99.8 7.9E-20 1.7E-24 164.2 1.4 157 226-382 137-319 (319)
17 PRK15387 E3 ubiquitin-protein 99.8 2.9E-17 6.3E-22 158.1 16.7 264 59-366 202-465 (788)
18 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-19 4.9E-24 161.2 1.2 278 63-358 3-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 2.1E-15 4.5E-20 146.2 12.8 162 203-383 263-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 4.2E-15 9.2E-20 144.1 13.3 225 83-335 200-428 (754)
21 KOG0617 Ras suppressor protein 99.6 8.6E-17 1.9E-21 122.2 -3.5 162 224-391 31-193 (264)
22 KOG0617 Ras suppressor protein 99.5 5E-16 1.1E-20 118.0 -4.1 157 32-193 31-188 (264)
23 KOG1909 Ran GTPase-activating 99.4 2.6E-14 5.6E-19 120.8 -2.0 135 152-286 155-310 (382)
24 KOG1909 Ran GTPase-activating 99.4 6.2E-14 1.3E-18 118.6 -1.2 188 196-383 86-311 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.3 3E-12 6.5E-17 126.5 4.6 272 32-310 521-806 (889)
26 KOG4658 Apoptotic ATPase [Sign 99.2 1.6E-11 3.6E-16 121.3 6.7 318 56-380 521-856 (889)
27 KOG3207 Beta-tubulin folding c 99.1 3.9E-12 8.5E-17 110.9 -1.1 210 152-361 119-341 (505)
28 KOG3207 Beta-tubulin folding c 99.1 8.6E-12 1.9E-16 108.8 0.8 210 127-336 118-340 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 2.9E-15 92.2 5.1 126 247-376 16-146 (175)
30 PF14580 LRR_9: Leucine-rich r 99.0 2.9E-10 6.4E-15 90.3 5.4 125 224-353 17-147 (175)
31 KOG1259 Nischarin, modulator o 99.0 2.3E-10 4.9E-15 95.4 3.6 131 250-386 284-415 (490)
32 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.6E-15 96.3 1.7 130 226-361 284-414 (490)
33 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 71.3 4.4 61 322-382 1-61 (61)
34 COG4886 Leucine-rich repeat (L 98.9 1.5E-09 3.2E-14 100.4 5.3 177 177-361 115-292 (394)
35 PF13855 LRR_8: Leucine rich r 98.9 2.6E-09 5.6E-14 69.7 3.9 60 10-69 1-60 (61)
36 KOG0532 Leucine-rich repeat (L 98.8 1.1E-10 2.5E-15 105.2 -3.9 210 182-401 79-298 (722)
37 KOG2120 SCF ubiquitin ligase, 98.8 6.5E-11 1.4E-15 98.5 -6.0 176 179-356 186-373 (419)
38 PLN03150 hypothetical protein; 98.8 8.2E-09 1.8E-13 100.1 6.9 106 276-381 420-526 (623)
39 COG4886 Leucine-rich repeat (L 98.8 1.4E-08 3.1E-13 93.9 7.4 198 38-244 97-295 (394)
40 PLN03150 hypothetical protein; 98.8 2.1E-08 4.6E-13 97.3 8.0 104 299-402 419-526 (623)
41 KOG0532 Leucine-rich repeat (L 98.8 5.1E-10 1.1E-14 101.1 -2.9 195 153-357 74-271 (722)
42 KOG2120 SCF ubiquitin ligase, 98.7 2E-10 4.3E-15 95.6 -6.0 176 131-308 186-373 (419)
43 KOG4341 F-box protein containi 98.7 4.3E-10 9.2E-15 97.9 -4.9 293 83-375 139-457 (483)
44 KOG0531 Protein phosphatase 1, 98.6 3.3E-09 7.2E-14 98.3 -1.5 197 175-383 69-268 (414)
45 COG5238 RNA1 Ran GTPase-activa 98.6 9.8E-09 2.1E-13 84.6 -0.3 188 196-383 86-316 (388)
46 KOG2982 Uncharacterized conser 98.6 1E-08 2.2E-13 85.6 -0.5 227 32-258 43-287 (418)
47 KOG4341 F-box protein containi 98.5 7.4E-10 1.6E-14 96.4 -7.6 291 107-397 139-455 (483)
48 PF13306 LRR_5: Leucine rich r 98.5 2.8E-07 6E-12 70.7 7.1 125 267-397 5-129 (129)
49 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 2.9E-13 94.3 -0.8 241 33-287 71-318 (414)
50 COG5238 RNA1 Ran GTPase-activa 98.5 9.1E-09 2E-13 84.8 -2.8 219 33-262 29-284 (388)
51 KOG2982 Uncharacterized conser 98.4 5.7E-08 1.2E-12 81.3 1.3 106 107-212 46-156 (418)
52 PF13306 LRR_5: Leucine rich r 98.4 1.7E-06 3.8E-11 66.2 8.1 122 5-132 7-128 (129)
53 KOG1859 Leucine-rich repeat pr 98.3 7E-09 1.5E-13 96.6 -7.8 126 227-359 165-292 (1096)
54 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.9E-13 94.0 -6.0 197 129-335 83-292 (1096)
55 KOG1947 Leucine rich repeat pr 98.1 1.8E-07 3.9E-12 89.1 -4.5 18 294-311 358-375 (482)
56 KOG3665 ZYG-1-like serine/thre 98.0 1.5E-06 3.2E-11 84.6 -0.3 152 202-355 122-284 (699)
57 KOG1644 U2-associated snRNP A' 97.9 3.8E-05 8.3E-10 61.1 6.5 103 251-355 43-149 (233)
58 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 48.2 2.5 36 347-383 2-37 (44)
59 PRK15386 type III secretion pr 97.9 0.00013 2.9E-09 65.7 10.3 12 323-334 157-168 (426)
60 KOG3665 ZYG-1-like serine/thre 97.8 9.3E-06 2E-10 79.1 2.7 152 58-211 122-284 (699)
61 KOG4579 Leucine-rich repeat (L 97.8 1.4E-06 3.1E-11 64.5 -3.2 84 274-359 53-136 (177)
62 KOG4579 Leucine-rich repeat (L 97.7 1.6E-06 3.4E-11 64.3 -3.1 106 228-335 29-136 (177)
63 PF12799 LRR_4: Leucine Rich r 97.7 3.5E-05 7.6E-10 45.9 3.2 37 322-359 1-37 (44)
64 PRK15386 type III secretion pr 97.7 0.00019 4E-09 64.8 8.9 141 222-381 48-188 (426)
65 KOG1644 U2-associated snRNP A' 97.7 0.0001 2.2E-09 58.7 5.6 127 12-141 21-151 (233)
66 KOG1947 Leucine rich repeat pr 97.5 3.1E-06 6.6E-11 80.7 -5.4 172 201-372 187-389 (482)
67 KOG2123 Uncharacterized conser 97.2 1.4E-05 3E-10 66.7 -4.7 99 274-376 19-123 (388)
68 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.2E-09 58.6 2.1 15 54-68 61-75 (260)
69 KOG2739 Leucine-rich acidic nu 96.8 0.0007 1.5E-08 56.4 2.2 88 6-95 39-129 (260)
70 KOG2123 Uncharacterized conser 96.6 0.00011 2.4E-09 61.4 -3.7 97 297-397 18-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.5 0.0021 4.5E-08 31.7 1.7 22 371-393 1-22 (22)
72 KOG3864 Uncharacterized conser 95.9 0.00077 1.7E-08 53.9 -2.3 82 300-381 103-187 (221)
73 KOG3864 Uncharacterized conser 95.2 0.0023 5.1E-08 51.2 -1.9 83 252-334 103-188 (221)
74 PF00560 LRR_1: Leucine Rich R 94.8 0.017 3.6E-07 28.4 1.1 19 348-367 2-20 (22)
75 PF13504 LRR_7: Leucine rich r 93.2 0.054 1.2E-06 24.6 1.1 13 371-383 2-14 (17)
76 PF13516 LRR_6: Leucine Rich r 92.0 0.022 4.9E-07 28.6 -1.1 17 370-386 2-18 (24)
77 KOG4308 LRR-containing protein 90.1 0.00096 2.1E-08 62.4 -12.8 83 180-262 89-184 (478)
78 KOG4308 LRR-containing protein 89.8 0.0014 3.1E-08 61.3 -12.0 185 202-386 87-306 (478)
79 smart00369 LRR_TYP Leucine-ric 87.7 0.31 6.8E-06 24.9 1.1 21 370-390 2-22 (26)
80 smart00370 LRR Leucine-rich re 87.7 0.31 6.8E-06 24.9 1.1 21 370-390 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 84.6 0.023 5.1E-07 46.7 -6.2 99 294-395 38-136 (326)
82 KOG0473 Leucine-rich repeat pr 75.3 0.065 1.4E-06 44.2 -6.5 85 54-141 38-122 (326)
83 smart00364 LRR_BAC Leucine-ric 69.4 3 6.5E-05 21.4 1.1 18 370-388 2-19 (26)
84 smart00367 LRR_CC Leucine-rich 68.3 2.9 6.3E-05 21.2 0.9 15 369-383 1-16 (26)
85 smart00365 LRR_SD22 Leucine-ri 65.3 5.4 0.00012 20.5 1.5 15 369-383 1-15 (26)
86 smart00368 LRR_RI Leucine rich 64.9 2.7 5.8E-05 21.9 0.4 14 299-312 3-16 (28)
87 KOG3763 mRNA export factor TAP 50.2 9.3 0.0002 36.2 1.5 67 294-360 214-284 (585)
88 KOG1665 AFH1-interacting prote 43.9 29 0.00063 28.7 3.2 86 296-385 169-256 (302)
89 KOG3763 mRNA export factor TAP 42.6 16 0.00034 34.8 1.7 82 271-352 215-307 (585)
90 KOG4242 Predicted myosin-I-bin 32.4 1.9E+02 0.0041 27.4 6.8 61 251-311 414-481 (553)
91 PF05725 FNIP: FNIP Repeat; I 20.1 2E+02 0.0043 16.7 3.4 8 274-281 12-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.3e-45 Score=372.00 Aligned_cols=402 Identities=41% Similarity=0.623 Sum_probs=280.6
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+.++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 46667777777777777777777777777777777777777777776677777777777777777777766666677777
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEe
Q 035857 82 TNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLL 161 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 161 (404)
++|++|++++|.+....|..++++++|+.|++++|.+.+..+..+.++++|++|++++|.+....+..+.++++|++|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 77777777777776667777777777777777777776666666777777777777777776666667777777777777
Q ss_pred cCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCC
Q 035857 162 NRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGP 241 (404)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (404)
++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++++.|++++|.+...
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 77776655566666777777777777776655556666667777777776666544444444445555555555555444
Q ss_pred ChhhhccCCCcCEEEcCCCccccccCccccCC------------------------CcCcEEEccCCccCCCCCCcccCC
Q 035857 242 IPPTIGNLTNLTSLDLSSNQLSGLLPREVRNL------------------------KYLASLSLNGNNLIGPIPPTIGYL 297 (404)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~------------------------~~L~~L~l~~~~~~~~~~~~~~~~ 297 (404)
.+..+..+++|+.|++++|+++...+..+..+ ++|+.|++++|.+....|..+ ..
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~ 474 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GS 474 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cc
Confidence 44455555555555555555544444444444 445555555554443333322 34
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDV 377 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 377 (404)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+++..|..|.++++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 56677777777776666777777888888888888888778888888888888888888888888888888888888888
Q ss_pred cCCeeeeecCCcccccC---cceeccCcCC
Q 035857 378 SKNNLSGVIPKSVLRVP---GLKWSENNLE 404 (404)
Q Consensus 378 ~~~~~~~~~~~~~~~~~---~l~~~~~~~~ 404 (404)
++|++++.+|..+.++. .+++++|+++
T Consensus 555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCCcccccCChhHhcCcccCEEeccCCcce
Confidence 88888888887765544 4458888763
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.8e-45 Score=370.59 Aligned_cols=399 Identities=39% Similarity=0.617 Sum_probs=306.8
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..|+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+.++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 56778888888888888888887788888888888888888888877777778888888888888887776667777777
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEe
Q 035857 82 TNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLL 161 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 161 (404)
++|++|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++.+|.+....+..+..+++|++|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 88888888887776667777777777777777777777666666777777777777777776666666777777777777
Q ss_pred cCCCCCCCCcccccccccceEEEeccccccCccc------------------------ccccCccccCeEEeeccccCcc
Q 035857 162 NRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLS------------------------KEVGNLKNLDRLLLNRNNLTGS 217 (404)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~------------------------~~~~~~~~L~~L~l~~~~~~~~ 217 (404)
++|.+....+..+..+++|+.+++++|.+....+ ..+..+++|+.|++++|.++..
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 7777665555566666666777666665543333 3344555666666666655544
Q ss_pred cCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCC
Q 035857 218 IPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYL 297 (404)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (404)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ ..++|+.|++++|.+....+..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 55555566666666666666655555555667777777777777665555444 35899999999999988888889999
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDV 377 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 377 (404)
++|+.|++++|.+.+..|..+..+++|++|++++|.+....|..+..+++|+.|++++|.+++.+|..+.++++|+.+++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~l 578 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNI 578 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEec
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeecCCc--ccccCcceeccC
Q 035857 378 SKNNLSGVIPKS--VLRVPGLKWSEN 401 (404)
Q Consensus 378 ~~~~~~~~~~~~--~~~~~~l~~~~~ 401 (404)
++|++.+.+|.. |.........+|
T Consensus 579 s~N~l~~~~p~~~~~~~~~~~~~~~n 604 (968)
T PLN00113 579 SHNHLHGSLPSTGAFLAINASAVAGN 604 (968)
T ss_pred cCCcceeeCCCcchhcccChhhhcCC
Confidence 999999999954 444333333443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-40 Score=292.10 Aligned_cols=388 Identities=25% Similarity=0.247 Sum_probs=332.9
Q ss_pred CCCCc-cEEEcCCCcccccCcccccCC--CcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 8 ALSKL-EELDLSYNSLTGTIPAEIGSL--RNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 8 ~~~~L-~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
.|+.. ..|+.++..+.......+..+ +.-+.|++++|.+..+.+..|.++++|+.+++..|.+. .+|.......+|
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 34443 344677766664333333332 34567999999998888888999999999999999887 446555667789
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCC
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRN 164 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 164 (404)
+.|++.+|.|.....+.++.++.|+.+++++|.++......|..-.++++|++++|.|++.....|..+.+|.+|.++.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 99999999998888888999999999999999998777777777789999999999999988889999999999999999
Q ss_pred CCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChh
Q 035857 165 SLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPP 244 (404)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (404)
+++......|.++|+|+.|++..|.+.......|.++++|+.|.+..|.+....+..|..+.++++|+++.|++......
T Consensus 208 rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 208 RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 99977777888899999999999988877778899999999999999998866677888899999999999999887788
Q ss_pred hhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCc
Q 035857 245 TIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 324 (404)
Q Consensus 245 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 324 (404)
++-+++.|++|+++.|.|..+-+..|..+++|+.|+++.|.++..-+..|..+..|+.|+++.|.+.......|..+++|
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence 88999999999999999998888899999999999999999987777788889999999999999988777888999999
Q ss_pred cEEEecCccccc---cCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcce
Q 035857 325 LNLVLSHNSLSG---SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397 (404)
Q Consensus 325 ~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 397 (404)
+.|++++|.+.- .....|.++++|+.|.+.||++..+.-.+|.++..|++|++.+|.|-.+.|..|..+ +||
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 999999998752 244567889999999999999987777899999999999999999998999998877 666
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-40 Score=290.11 Aligned_cols=371 Identities=26% Similarity=0.255 Sum_probs=338.6
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEc
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNL 89 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (404)
+..++|++++|.+...-+..|.++|+|+.+.+..|.++ ..|.......+|+.|++.+|.+.++....++.++.|++|++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 35678999999999888888999999999999999998 67777777789999999999999888888999999999999
Q ss_pred cCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCC
Q 035857 90 SLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGP 169 (404)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 169 (404)
+.|.+.......|..-.++++|++++|.++......|.++.+|..|.++.|.++...+..|.++++|+.|++..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999866556777778999999999999988888999999999999999999988888999999999999999998855
Q ss_pred CcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccC
Q 035857 170 IPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNL 249 (404)
Q Consensus 170 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 249 (404)
....|.+++.|+.+.+..|.+......+|..+.+++.|+++.|++......++..+++|+.|++++|.|..+.+.++..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 56789999999999999999999999999999999999999999987777788899999999999999998888999999
Q ss_pred CCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCC---CCchhhcCCCccE
Q 035857 250 TNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS---IPPELMNCSQLLN 326 (404)
Q Consensus 250 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~ 326 (404)
+.|+.|+++.|+++...+..|..+..|++|.+++|.++.....+|..+++|++||++.|.+... ....|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 9999999999999999999999999999999999999877777899999999999999977653 4456788999999
Q ss_pred EEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCee
Q 035857 327 LVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNL 382 (404)
Q Consensus 327 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 382 (404)
|.+.||++..+...+|.+++.|+.|+|.+|.+..+-+.+|..+ +|++|.++.-.+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 9999999998777899999999999999999999999999999 999998876544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.7e-33 Score=251.99 Aligned_cols=375 Identities=27% Similarity=0.398 Sum_probs=330.0
Q ss_pred cCCCCccEEEcCCCccc-ccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCc
Q 035857 7 GALSKLEELDLSYNSLT-GTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLT 85 (404)
Q Consensus 7 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 85 (404)
+-+|-++-+++++|.+. +.+|..+..++.++.|.+....+. ..|+.++++.+|++|.+.+|.+.+. -..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhH
Confidence 55677888999999999 679999999999999999999987 7899999999999999999998743 44567889999
Q ss_pred EEEccCcccc-CCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCC
Q 035857 86 SLNLSLNQLS-GRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRN 164 (404)
Q Consensus 86 ~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 164 (404)
.+.+.+|.+. ..+|..+-.+..|..|++++|++. ..+..+....++-.|++++|+|..+....|.++..|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 9999998874 356777888999999999999998 56777888889999999999999887788889999999999999
Q ss_pred CCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccC-cccCcccCCCCCCCEEEccCCccCCCCh
Q 035857 165 SLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLT-GSIPSTIGYLNLLDELDLSHNRLDGPIP 243 (404)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 243 (404)
++. .++..+..+..|+.|.+++|.+.......+..+++|+.|.+++.+-+ ..+|.++..+.+|+.++++.|.+. ..|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 56777889999999999999988777777778889999999998655 567888999999999999999887 889
Q ss_pred hhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccC-CCCchhhcCC
Q 035857 244 PTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS-SIPPELMNCS 322 (404)
Q Consensus 244 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 322 (404)
.++..+++|+.|++++|+++.. ........+|++|+++.|+++ .+|.++.++++|+.|.+.+|.++- -+|.++.++.
T Consensus 239 ecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 9999999999999999999843 445566789999999999998 889999999999999999997764 3677889999
Q ss_pred CccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCccc
Q 035857 323 QLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVL 391 (404)
Q Consensus 323 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 391 (404)
+|+++...+|.+. ..|+.++.|..|+.|.+++|.+. +.|+++--++.|+.|++..|+.. +.|.-+.
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~ 382 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPN 382 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcc
Confidence 9999999999997 89999999999999999999988 78999988999999999999976 6664433
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=1e-31 Score=228.37 Aligned_cols=387 Identities=32% Similarity=0.447 Sum_probs=208.9
Q ss_pred cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
++.++..+.++++.++... .+|.+++.+..++.++.+.+++. .+|..+...++|++++++.+.+. ..++.+..+..+
T Consensus 63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 3445555555555555554 34444555555555555555554 45555555555555555555544 233444445555
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCC----------------------CChhhhhCCCCccEEEccCCcC
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTG----------------------PIPSTLYHLNQLRVLFLAYNNL 142 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----------------------~~~~~~~~l~~L~~L~l~~~~~ 142 (404)
+.++..+|++. ..|+++..+.+|..+++.++.++. ..+..++.+.+|..|++..|.+
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 55555555554 444444444444444444444442 3334444555555555555555
Q ss_pred CCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCccc
Q 035857 143 VGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTI 222 (404)
Q Consensus 143 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (404)
. ..| .|.+++.|++++++.|++.........+++++..++++.+++... ++.+.-+++|+.|++++|.++ ..+..+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-PDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-chHHHHhhhhhhhcccCCccc-cCCccc
Confidence 4 233 455555566666655555533333334666666777776666533 344455666777777777766 555566
Q ss_pred CCCCCCCEEEccCCccCCCCh-----------------------------------------hhhccCCCcCEEEcCCCc
Q 035857 223 GYLNLLDELDLSHNRLDGPIP-----------------------------------------PTIGNLTNLTSLDLSSNQ 261 (404)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~-----------------------------------------~~l~~~~~L~~L~l~~~~ 261 (404)
+.+ .|+.|.+.||++..+.. .......+.+.|++++-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 666 66777776665421000 000112234555555555
Q ss_pred cccccCccccCC--CcCcEEEccCCccC-----------------------CCCCCcccCCCCccEEEcCCccccCCCCc
Q 035857 262 LSGLLPREVRNL--KYLASLSLNGNNLI-----------------------GPIPPTIGYLTNLTSLNLGYNQLNSSIPP 316 (404)
Q Consensus 262 ~~~~~~~~~~~~--~~L~~L~l~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 316 (404)
++.++.+.|..- .-...+++++|++. +..+..+..+++|..|++++|.+. ..|.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~ 452 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPE 452 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcch
Confidence 554444444221 23566666666553 122333455678888888888776 4566
Q ss_pred hhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcc
Q 035857 317 ELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGL 396 (404)
Q Consensus 317 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 396 (404)
.+..+..|+.++++.|.+. ..|++....-.++.+-.++|++....+..++++.+|..|++.+|.+. .+|..+.+|.+|
T Consensus 453 e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL 530 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL 530 (565)
T ss_pred hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce
Confidence 6667777888888888776 55655554445555555555655444444566666666666666655 455555544444
Q ss_pred e---eccCcC
Q 035857 397 K---WSENNL 403 (404)
Q Consensus 397 ~---~~~~~~ 403 (404)
+ +++|+|
T Consensus 531 ~hLeL~gNpf 540 (565)
T KOG0472|consen 531 RHLELDGNPF 540 (565)
T ss_pred eEEEecCCcc
Confidence 4 666655
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.4e-30 Score=231.92 Aligned_cols=354 Identities=32% Similarity=0.432 Sum_probs=304.1
Q ss_pred CCCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccc-cCCCccc
Q 035857 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDG-LIPSSIG 79 (404)
Q Consensus 1 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~ 79 (404)
+.|.....|++++.|.+...++. .+|+.++.+.+|++|.+..|.+. ..-..+..++.||.+.+.+|.+.. .++..+-
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 46888889999999999888877 68888999999999999999987 455667889999999999998763 3666777
Q ss_pred CCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEE
Q 035857 80 NLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTL 159 (404)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 159 (404)
.+..|.+|++++|++. ..|..+...+++-.|+++.|.+..+....|.++..|-.||+++|.+. .+|..+..+.+|++|
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 8999999999999998 78999999999999999999998777778889999999999999988 667778899999999
Q ss_pred EecCCCCCCCCcccccccccceEEEecccccc-CcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCcc
Q 035857 160 LLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV-GPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRL 238 (404)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (404)
.+++|.+.......+..+..|+.|.+++++-+ ...+..+..+.+|..++++.|.++ ..|..+-..++|+.|++++|.+
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 99999887555555556677788888887643 345667888999999999999988 7788888999999999999999
Q ss_pred CCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCC-CCCCcccCCCCccEEEcCCccccCCCCch
Q 035857 239 DGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSSIPPE 317 (404)
Q Consensus 239 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 317 (404)
++ .......-.+|+.|+++.|+++ ..|.++..+++|+.|.+.+|+++- -+|+.++++..|+.+..++|.+. ..|+.
T Consensus 258 te-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 258 TE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred ee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 84 4444555578999999999998 667888999999999999998763 48888999999999999999886 78899
Q ss_pred hhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCC
Q 035857 318 LMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 363 (404)
Q Consensus 318 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 363 (404)
++.|..|+.|+++.|.+. .+|+++.-++.|+.|++.+|+-.-..|
T Consensus 335 lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999998 799999999999999999996543444
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=1.8e-24 Score=222.19 Aligned_cols=337 Identities=25% Similarity=0.284 Sum_probs=162.7
Q ss_pred cccCCCCccEEEcCCCcc------cccCcccccCCC-cccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCc
Q 035857 5 EIGALSKLEELDLSYNSL------TGTIPAEIGSLR-NLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSS 77 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 77 (404)
+|.+|++|+.|.+..+.. ...+|..|..+| +|+.|.+.++++. ..|..+ ...+|++|++.++.+. ..+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 456666666666644321 122444444442 4666666666554 444444 3456666666666554 23444
Q ss_pred ccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCcccc
Q 035857 78 IGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLK 157 (404)
Q Consensus 78 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 157 (404)
+..+++|+.|+++++.....+|+ +..+++|+.|++.+|.....++..+..+++|+.|++++|.....++..+ ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 45566666666665543223332 5556666666666655444455555566666666666554333333322 455666
Q ss_pred EEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCc-------ccCcccCCCCCCCE
Q 035857 158 TLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTG-------SIPSTIGYLNLLDE 230 (404)
Q Consensus 158 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~ 230 (404)
+|++++|......+. ..++|+.|+++.+.+.... .. ..+++|+.|.+.++.... ..+.....+++|+.
T Consensus 708 ~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP-~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 708 RLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP-SN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred EEeCCCCCCcccccc---ccCCcCeeecCCCcccccc-cc-ccccccccccccccchhhccccccccchhhhhccccchh
Confidence 666666543222221 1235555666555543221 11 134555555554432110 00011122345555
Q ss_pred EEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccc
Q 035857 231 LDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQL 310 (404)
Q Consensus 231 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 310 (404)
|++++|......|..+.++++|+.|++++|......+... .+++|+.|++++|.....++. ..++|+.|+++++.+
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGI 858 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCC
Confidence 5555554444445555555555555555543222222222 345555555555543322222 124555555555555
Q ss_pred cCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCC
Q 035857 311 NSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHN 356 (404)
Q Consensus 311 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 356 (404)
. ..|..+..+++|+.|++++|+....++..+..+++|+.+++++|
T Consensus 859 ~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 859 E-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred c-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 4 23444555555555555555443344444455555555555555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-29 Score=213.72 Aligned_cols=380 Identities=31% Similarity=0.453 Sum_probs=262.2
Q ss_pred CccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEcc
Q 035857 11 KLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLS 90 (404)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (404)
.++.+.++.+.+....++ +.++..|.+|++.++.+. ..|.++.++..++.++.+++.+. ..+..+..++++..++++
T Consensus 46 ~l~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccHh-hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 477788888888854444 678899999999999987 78888999999999999999887 567788889999999999
Q ss_pred CccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCC----------------------CCch
Q 035857 91 LNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVG----------------------PLPR 148 (404)
Q Consensus 91 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------~~~~ 148 (404)
++.+. ..++.++.+..|+.++..+|.+. ..+..+.++.++..+++.++.+.. .+|.
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 99988 77888999999999999999887 455556666666666666555543 3334
Q ss_pred hhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCC
Q 035857 149 EVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLL 228 (404)
Q Consensus 149 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 228 (404)
.++.+.+|..|++..|++. ..+ .|.+|..|+++.+..+.+.....+....++++..|++.+|++. .+|.-+..+.+|
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 4445555555555555544 222 4555555555555555555444455556667777777777766 344444455667
Q ss_pred CEEEccCCccCCCChhhhccCCCcCEEEcCCCcccccc--------------------------------------Cccc
Q 035857 229 DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLL--------------------------------------PREV 270 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------------------------~~~~ 270 (404)
+.|++++|.++ ..|..++++ .|+.|.+.||.+..+- ...+
T Consensus 278 ~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 77777777666 556666666 6777777776332100 0000
Q ss_pred ---cCCCcCcEEEccCCccCCCCCC-cccC--CCCccEEEcCCccccC-----------------------CCCchhhcC
Q 035857 271 ---RNLKYLASLSLNGNNLIGPIPP-TIGY--LTNLTSLNLGYNQLNS-----------------------SIPPELMNC 321 (404)
Q Consensus 271 ---~~~~~L~~L~l~~~~~~~~~~~-~~~~--~~~L~~L~l~~~~~~~-----------------------~~~~~~~~~ 321 (404)
....+.+.|++++-+.+ .+|. .|.. -.-...+++++|++.+ ..+..++.+
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l 434 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQL 434 (565)
T ss_pred cchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhh
Confidence 01234555556555554 2222 2221 1225566777765542 333455678
Q ss_pred CCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccc---cCccee
Q 035857 322 SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLR---VPGLKW 398 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~---~~~l~~ 398 (404)
++|..|++++|.+- .+|..++.+..|+.++++.|.+. ..|.++.....++.+-.++|++..+.|+...+ +..|++
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred hcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 99999999999887 68899999999999999999887 67888888888999999999999777776554 455558
Q ss_pred ccCcC
Q 035857 399 SENNL 403 (404)
Q Consensus 399 ~~~~~ 403 (404)
.+|.+
T Consensus 513 ~nNdl 517 (565)
T KOG0472|consen 513 QNNDL 517 (565)
T ss_pred CCCch
Confidence 88865
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.4e-24 Score=220.20 Aligned_cols=344 Identities=24% Similarity=0.273 Sum_probs=264.7
Q ss_pred ccCcccccCCCcccEEeCCCccc------cCCCCcccCCCC-CCcEEEeCCccccccCCCcccCCCCCcEEEccCccccC
Q 035857 24 GTIPAEIGSLRNLLKLDLTNNIL------NGSIPLEFGNLK-DLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSG 96 (404)
Q Consensus 24 ~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 96 (404)
...+.+|.++++|+.|.+..+.. ....|..+..++ +|+.|.+.++.+. ..+..| ...+|+.|++.++.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 34667789999999999976532 234566666654 6999999998876 345555 4689999999999987
Q ss_pred CCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccc
Q 035857 97 RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYH 176 (404)
Q Consensus 97 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 176 (404)
.++..+..+++|+.++++++......+ .+..+++|++|++.+|......+..+..+++|+.|++++|......+..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 677888899999999999876443444 47788999999999987766778889999999999999985443444433 6
Q ss_pred cccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCC-------CChhhhccC
Q 035857 177 LNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDG-------PIPPTIGNL 249 (404)
Q Consensus 177 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~l~~~ 249 (404)
+++|+.|++++|......+. ..++|+.|+++++.+. .+|..+ .+++|++|.+.++.... ..+.....+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 88999999998864433332 2468999999999876 344433 46888888887753221 112223345
Q ss_pred CCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEe
Q 035857 250 TNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVL 329 (404)
Q Consensus 250 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 329 (404)
++|+.|++++|......|..+..+++|+.|++++|.....+|... .+++|+.|++++|......+.. .++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 789999999998766677788999999999999987665666655 6899999999999665444432 368999999
Q ss_pred cCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCee
Q 035857 330 SHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNL 382 (404)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 382 (404)
+++.+. .+|..+..+++|+.|++++|.-...++..+..+++|+.+++++|+-
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 999998 6888999999999999999866657777888899999999999963
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=4.5e-27 Score=219.40 Aligned_cols=377 Identities=32% Similarity=0.427 Sum_probs=242.3
Q ss_pred cCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcE
Q 035857 7 GALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTS 86 (404)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 86 (404)
.+.=+|+.|+++++++. .+|..+..++.|+.|+++.+.+. ..|.....+.+|+++++.++... ..+..+..+.+|++
T Consensus 42 ~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY 118 (1081)
T ss_pred hheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence 33445899999998887 68888888899999999999887 67778888999999999888777 56778888899999
Q ss_pred EEccCccccCCCccccCCCCCCcEEEccCc-------------------ccCCCChhhhhCCCCccEEEccCCcCCCCCc
Q 035857 87 LNLSLNQLSGRLPQEVGNLKNLDSLFLDNN-------------------NLTGPIPSTLYHLNQLRVLFLAYNNLVGPLP 147 (404)
Q Consensus 87 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 147 (404)
|+++.|.+. ..|..+..+..+..+..++| .+...+......+.. .+++..|.+..
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--- 192 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--- 192 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---
Confidence 999998876 44544444444444444443 333332233333322 35555555541
Q ss_pred hhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCC
Q 035857 148 REVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNL 227 (404)
Q Consensus 148 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (404)
-.+..+++|+.+....+++.... -.-++++.|..+.|.++. ...-....+|++++++.+.+. .++.+...|.+
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~--~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~n 265 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTT--LDVHPVPLNLQYLDISHNNLS-NLPEWIGACAN 265 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCccee--eccccccccceeeecchhhhh-cchHHHHhccc
Confidence 12334555555555555444211 123455555555555441 111223456777777777776 44566677777
Q ss_pred CCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcc-------------
Q 035857 228 LDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTI------------- 294 (404)
Q Consensus 228 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------- 294 (404)
++.++..+|++. ..+..+...++|+.+.+..|.+..+ +.......+|++|++..|.+.+..+..+
T Consensus 266 le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh
Confidence 777777777764 4455555556666666666666533 2333445666677766666542111111
Q ss_pred ------------cCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccC
Q 035857 295 ------------GYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 362 (404)
Q Consensus 295 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 362 (404)
..++.|+.|.+.+|.+++.....+.+++.|+.|++++|.+.......+.+++.|+.|+++||.+. .+
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TL 422 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hh
Confidence 12356677777777777766666777888888888888887555566778888888888888887 56
Q ss_pred CccccCCCcceEEEccCCeeeeecCCc--ccccCcceeccCcC
Q 035857 363 PSQLGKITNVSEVDVSKNNLSGVIPKS--VLRVPGLKWSENNL 403 (404)
Q Consensus 363 ~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~l~~~~~~~ 403 (404)
|.++..++.|++|...+|++. ..|+. +..++.+++|-|+|
T Consensus 423 p~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchh
Confidence 677788888888888888887 66632 33444455777765
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.7e-26 Score=215.58 Aligned_cols=378 Identities=30% Similarity=0.347 Sum_probs=194.4
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
.|..+..+++|+.|.++.+-|. ..|....++.+|+++.+.++.+. .+|..+..+.+|++|+++.|.+.. .+..+..+
T Consensus 60 fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~l 136 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVL 136 (1081)
T ss_pred CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCC-CchhHHhh
Confidence 4667778888999999888777 56777888899999999998887 788899999999999999887652 23333323
Q ss_pred CC-------------------CcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcC
Q 035857 82 TN-------------------LTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNL 142 (404)
Q Consensus 82 ~~-------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 142 (404)
+. ++.+++..+.+...+..++..+.+ .+++..|.+.. -.+.++++|+.+....+++
T Consensus 137 t~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 137 TAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLSNLANLEVLHCERNQL 211 (1081)
T ss_pred hHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhhhccchhhhhhhhccc
Confidence 32 444455544444444444444444 58888887752 2345666666666655554
Q ss_pred CCCCchhhcCCccccEEEecCCCCCC---------------------CCcccccccccceEEEeccccccCcccccccCc
Q 035857 143 VGPLPREVGNMKNLKTLLLNRNSLTG---------------------PIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNL 201 (404)
Q Consensus 143 ~~~~~~~~~~~~~L~~L~l~~~~~~~---------------------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 201 (404)
..... .-++|+.|..+.|.+.. ..+..+..+++|+.+++..|.++ ..+..+...
T Consensus 212 s~l~~----~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~ 286 (1081)
T KOG0618|consen 212 SELEI----SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRI 286 (1081)
T ss_pred ceEEe----cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhh
Confidence 42211 12444444444444431 12233444444444444444442 222333334
Q ss_pred cccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhcc-------------------------CCCcCEEE
Q 035857 202 KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGN-------------------------LTNLTSLD 256 (404)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-------------------------~~~L~~L~ 256 (404)
.+|+++.+..|.+. -.+.......+|++|++..|.+.......+.- ++.|+.|.
T Consensus 287 ~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 44444444444443 22333344556666666666554211111110 12233333
Q ss_pred cCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccc
Q 035857 257 LSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSG 336 (404)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 336 (404)
+.+|.+++.-...+.++++|+.|++++|.+.+.-...+.+++.|+.|+++||.++ .++..+..++.|++|...+|.+.
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~- 443 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL- 443 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-
Confidence 3333433333333444444444444444444222233344444444444444444 23344444444444444444444
Q ss_pred cCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcc
Q 035857 337 SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGL 396 (404)
Q Consensus 337 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 396 (404)
..| .+..++.|+.+|++.|+++......-...++|++|+++||.......+.|..|+++
T Consensus 444 ~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l 502 (1081)
T KOG0618|consen 444 SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSL 502 (1081)
T ss_pred ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhh
Confidence 333 44445555555555555442211111122455555555555443333444444443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-25 Score=186.63 Aligned_cols=377 Identities=23% Similarity=0.270 Sum_probs=220.4
Q ss_pred CccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCC-ccccccCCCcccCCCCCcEEEc
Q 035857 11 KLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQG-NKLDGLIPSSIGNLTNLTSLNL 89 (404)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 89 (404)
....|++..|+|+.+.+.+|+.+++||.|+++.|.|+.+.|++|..++.|..|-+.+ |++.+...+.|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345666777777777777777777777777777777777777777777776666655 6676666667777777777777
Q ss_pred cCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCC------------CCchhhcCCcccc
Q 035857 90 SLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVG------------PLPREVGNMKNLK 157 (404)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~~~~L~ 157 (404)
.-+++.-...++|+.+++|..|.+.++.+...-...|..+..++.+.+..+.+.. ..+..+++..-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 7666665566677777777777777776654444456666666666665554221 1111112222222
Q ss_pred EEEecCCCCCCCCcccccccccceEE--Ee-ccccc-cCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEc
Q 035857 158 TLLLNRNSLTGPIPSTLYHLNQLRIL--YL-AYNNL-VGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDL 233 (404)
Q Consensus 158 ~L~l~~~~~~~~~~~~~~~~~~L~~l--~l-~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 233 (404)
-..+.+.++.......|... ++.+ .+ +.+.. .......|..+++|++|++++|.++..-+.+|.....+++|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 22222222211111111111 1111 00 11111 1112234677888888888888888777778888888888888
Q ss_pred cCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCC-----CCCc-----------ccCC
Q 035857 234 SHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGP-----IPPT-----------IGYL 297 (404)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~-----------~~~~ 297 (404)
..|++..+...+|.++..|+.|++.+|+++...+.+|....+|.++++-.|..... +..| ....
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p 385 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSP 385 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCC
Confidence 88888766677788888888888888888888788888888888888877654211 0001 1112
Q ss_pred CCccEEEcCCccccCC---CCchh---------hcCCCccEE-EecCccccccCchhhhccccceEEEccCCcccccCCc
Q 035857 298 TNLTSLNLGYNQLNSS---IPPEL---------MNCSQLLNL-VLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 364 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~---~~~~~---------~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 364 (404)
-.++.+.++...+.+. .++.. ..|+-+.++ ..++..+ +.+|..+. ..-.++++.+|.++ .+|.
T Consensus 386 ~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~iP--~d~telyl~gn~~~-~vp~ 461 (498)
T KOG4237|consen 386 GFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGIP--VDVTELYLDGNAIT-SVPD 461 (498)
T ss_pred chhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch-hhcCCCCC--chhHHHhcccchhc-ccCH
Confidence 3445555555433221 11111 122223222 2222222 23443332 23456778888877 3444
Q ss_pred cccCCCcceEEEccCCeeeeecCCcccccCcc
Q 035857 365 QLGKITNVSEVDVSKNNLSGVIPKSVLRVPGL 396 (404)
Q Consensus 365 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 396 (404)
. .+.+| .+++++|+|+.....+|+|+..+
T Consensus 462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql 490 (498)
T KOG4237|consen 462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQL 490 (498)
T ss_pred H--HHhhh-hcccccCceehhhcccccchhhh
Confidence 3 55677 88888888875556667766554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=2.6e-23 Score=177.02 Aligned_cols=360 Identities=23% Similarity=0.252 Sum_probs=216.3
Q ss_pred CCc-cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCC-ccccCCCCcccCCCCCCcEEEeCCccccccCCCccc
Q 035857 2 IPS-EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTN-NILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIG 79 (404)
Q Consensus 2 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 79 (404)
||+ +|+.+++|++|+++.|+|..+-|++|.++++|..|.+.+ ++|++...++|.++..|+.|.+..+++.-...+.|.
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~ 161 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALR 161 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHH
Confidence 566 699999999999999999999999999999999988877 899877778899999999999999988877778889
Q ss_pred CCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccC------------CCChhhhhCCCCccEEEccC--------
Q 035857 80 NLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLT------------GPIPSTLYHLNQLRVLFLAY-------- 139 (404)
Q Consensus 80 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------------~~~~~~~~~l~~L~~L~l~~-------- 139 (404)
.++++..|.+.++.+...-...|..+..++.+.+..+.+- ...+..++.........+..
T Consensus 162 dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a 241 (498)
T KOG4237|consen 162 DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA 241 (498)
T ss_pred HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccch
Confidence 9999999999999887444447888888888877665421 00001111111011001111
Q ss_pred -----------------CcC-CCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCc
Q 035857 140 -----------------NNL-VGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNL 201 (404)
Q Consensus 140 -----------------~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 201 (404)
+.. ...-...|.++++|++|++++|+++.+....|.+...+++|.+..|++.......|.++
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~l 321 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGL 321 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcc
Confidence 111 11122344556666666666666655555556666666666666665555555555666
Q ss_pred cccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCC-C----ChhhhccCCCcCEEEcCCCccccccCccccCCCcC
Q 035857 202 KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDG-P----IPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYL 276 (404)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 276 (404)
..|++|++++|+++...+..|....+|.+|.+-.|+..- . ...++..-. .. ....-+.+-.+
T Consensus 322 s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~---~~----------~~~~Cq~p~~~ 388 (498)
T KOG4237|consen 322 SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS---VV----------GNPRCQSPGFV 388 (498)
T ss_pred ccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC---CC----------CCCCCCCCchh
Confidence 666666666666655555555555566666655544321 0 011111000 00 00001112334
Q ss_pred cEEEccCCccCCC------------CCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhc
Q 035857 277 ASLSLNGNNLIGP------------IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGN 344 (404)
Q Consensus 277 ~~L~l~~~~~~~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 344 (404)
+.+.+++..+.+. .+.....++-+.+..=..+......|..+. ..-.++.+.++.+. .+|.. .
T Consensus 389 ~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~ 463 (498)
T KOG4237|consen 389 RQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--L 463 (498)
T ss_pred ccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--H
Confidence 4444444333211 111222333333321111222223333332 24457888888887 45544 5
Q ss_pred cccceEEEccCCcccccCCccccCCCcceEEEccCC
Q 035857 345 LIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKN 380 (404)
Q Consensus 345 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 380 (404)
+.+| .+++++|++.......|.+++.|.++.+++|
T Consensus 464 ~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 464 LRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred Hhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5677 8899999988777788899999999988875
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=3e-18 Score=164.89 Aligned_cols=266 Identities=27% Similarity=0.312 Sum_probs=166.7
Q ss_pred CCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEec
Q 035857 83 NLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLN 162 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (404)
.-..|+++.+.+. .+|..+. ++|+.|.+.+|.++. ++. .+++|++|++++|.++.. +. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeecc
Confidence 3556777777666 5555553 367777777777663 222 246777777777777633 22 23577777777
Q ss_pred CCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCC
Q 035857 163 RNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPI 242 (404)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 242 (404)
+|.+... +. ..++|+.|++++|.+..... ..++|+.|++++|.+.. ++. ...+|+.|++++|.+.. +
T Consensus 271 ~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~-Lp~---lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhhh-hh---chhhcCEEECcCCccccccc----cccccceeECCCCcccc-CCC---CcccccccccccCcccc-c
Confidence 7766532 22 22456677777776654321 24667777777777663 222 23457777777777653 3
Q ss_pred hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCC
Q 035857 243 PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS 322 (404)
Q Consensus 243 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 322 (404)
|. ..++|+.|++++|+++..+. ..++|+.|++++|.+. .+|.. ..+|+.|++++|.+.. .+.. .+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred cc---cccccceEecCCCccCCCCC----CCcccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---cc
Confidence 32 12467788888877764332 1356777777777776 34432 3567788888887764 3322 25
Q ss_pred CccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccc
Q 035857 323 QLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLR 392 (404)
Q Consensus 323 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 392 (404)
+|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|..+.++++|+.|++++|++++..+..+..
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 77888888887763 4432 246777888888877 56777777888888888888887766655533
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=7.9e-20 Score=164.18 Aligned_cols=157 Identities=25% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCCCEEEccCCccCCC----ChhhhccCCCcCEEEcCCCcccccc----CccccCCCcCcEEEccCCccCCC----CCCc
Q 035857 226 NLLDELDLSHNRLDGP----IPPTIGNLTNLTSLDLSSNQLSGLL----PREVRNLKYLASLSLNGNNLIGP----IPPT 293 (404)
Q Consensus 226 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~ 293 (404)
++|++|++++|.+... ....+..++.|++|++++|.+.+.. ...+...++|++|++++|.+.+. +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5566666666655421 1223445556666666666554211 12233345666666666655422 2223
Q ss_pred ccCCCCccEEEcCCccccCCCCchhh-c----CCCccEEEecCcccccc----CchhhhccccceEEEccCCccccc---
Q 035857 294 IGYLTNLTSLNLGYNQLNSSIPPELM-N----CSQLLNLVLSHNSLSGS----IPSEIGNLIHLRQLDLSHNFINGT--- 361 (404)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 361 (404)
+..+++|++|++++|.+.+.....+. . .+.|+.|++++|.+.+. ....+..+++|+.+++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 44556666777766666542222221 1 25666677766666422 222334456666666666666543
Q ss_pred -CCccccCC-CcceEEEccCCee
Q 035857 362 -IPSQLGKI-TNVSEVDVSKNNL 382 (404)
Q Consensus 362 -~~~~~~~~-~~L~~l~l~~~~~ 382 (404)
....+... +.|+++++.++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 22223333 4666666666553
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.9e-17 Score=158.14 Aligned_cols=264 Identities=27% Similarity=0.310 Sum_probs=172.2
Q ss_pred CCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEcc
Q 035857 59 DLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLA 138 (404)
Q Consensus 59 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 138 (404)
.-..|+++++.+. .+|..+. ++|+.|.+++|.++ .+|. ..++|++|++++|.++. ++. ..++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence 4456777777665 3344443 36777777777766 3443 24677777777777663 222 23567777777
Q ss_pred CCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCccc
Q 035857 139 YNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSI 218 (404)
Q Consensus 139 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (404)
+|.+.. ++. ..++|+.|++++|++... +. ..++|+.|++++|.+..... ....|+.|.+++|.++. +
T Consensus 271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhh-hhh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC----CcccccccccccCcccc-c
Confidence 776652 222 225677777777777632 22 24678888887777664321 23457777888877763 3
Q ss_pred CcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCC
Q 035857 219 PSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLT 298 (404)
Q Consensus 219 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 298 (404)
+. ...+|+.|++++|++.. +|.. .++|+.|++++|++..+. . .+.+|+.|++++|.+. .+|.. .+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt-~LP~l---~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLT-SLPVL---PS 402 (788)
T ss_pred cc---cccccceEecCCCccCC-CCCC---CcccceehhhccccccCc-c---cccccceEEecCCccc-CCCCc---cc
Confidence 32 22478888888888773 3321 357788888888877432 2 2357888888888876 44432 36
Q ss_pred CccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccc
Q 035857 299 NLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 366 (404)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 366 (404)
+|+.|++++|.+.. +|.. ..+|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 78888888888874 3432 246788888888887 578888888888899998888887666555
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.3e-19 Score=161.23 Aligned_cols=278 Identities=26% Similarity=0.276 Sum_probs=149.3
Q ss_pred EEeCCcccc-ccCCCcccCCCCCcEEEccCccccCC----CccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEc
Q 035857 63 LRLQGNKLD-GLIPSSIGNLTNLTSLNLSLNQLSGR----LPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFL 137 (404)
Q Consensus 63 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 137 (404)
|++..+.+. ......+..+.+|+.++++++.+... ++..+...+++++++++++.+... +..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH-----------
Confidence 444444443 12223344455566666666655321 233344455566666655544310 0000
Q ss_pred cCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccc---cceEEEeccccccCc----ccccccCc-cccCeEEe
Q 035857 138 AYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLN---QLRILYLAYNNLVGP----LSKEVGNL-KNLDRLLL 209 (404)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~l~l~~~~~~~~----~~~~~~~~-~~L~~L~l 209 (404)
...+..+..+++|+.|++++|.+.......+..+. +|++|+++++.+... ....+..+ ++|+.|++
T Consensus 71 ------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L 144 (319)
T cd00116 71 ------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVL 144 (319)
T ss_pred ------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEc
Confidence 01112333344555555555444322222222222 255555555544321 11223334 56667777
Q ss_pred eccccCc----ccCcccCCCCCCCEEEccCCccCCC----ChhhhccCCCcCEEEcCCCcccccc----CccccCCCcCc
Q 035857 210 NRNNLTG----SIPSTIGYLNLLDELDLSHNRLDGP----IPPTIGNLTNLTSLDLSSNQLSGLL----PREVRNLKYLA 277 (404)
Q Consensus 210 ~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~ 277 (404)
++|.++. .....+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+.. ...+..+++|+
T Consensus 145 ~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 145 GRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred CCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 6666552 1223345556777788877766532 2233455568888888887765332 23445667888
Q ss_pred EEEccCCccCCCCCCccc-----CCCCccEEEcCCccccCCC----CchhhcCCCccEEEecCccccccCc----hhhhc
Q 035857 278 SLSLNGNNLIGPIPPTIG-----YLTNLTSLNLGYNQLNSSI----PPELMNCSQLLNLVLSHNSLSGSIP----SEIGN 344 (404)
Q Consensus 278 ~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~ 344 (404)
+|++++|.+.+.....+. ..+.|++|++++|.+++.. ...+..+++|+.+++++|.+.+... ..+..
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~ 304 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLE 304 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhh
Confidence 888888877642111111 2478999999999886422 2344566889999999999885533 33333
Q ss_pred c-ccceEEEccCCcc
Q 035857 345 L-IHLRQLDLSHNFI 358 (404)
Q Consensus 345 ~-~~L~~L~l~~~~~ 358 (404)
. +.|+++++.++++
T Consensus 305 ~~~~~~~~~~~~~~~ 319 (319)
T cd00116 305 PGNELESLWVKDDSF 319 (319)
T ss_pred cCCchhhcccCCCCC
Confidence 4 6888998887753
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=2.1e-15 Score=146.25 Aligned_cols=162 Identities=24% Similarity=0.390 Sum_probs=71.0
Q ss_pred ccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEcc
Q 035857 203 NLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLN 282 (404)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (404)
+|+.|++++|.+. .++..+ +++|+.|++++|.+.. .|..+ .+.|+.|++++|+++..+. .+ +++|+.|+++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls 333 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENL--PEELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTALPE-TL--PPGLKTLEAG 333 (754)
T ss_pred CCCEEECcCCccC-cccccc--CCCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccccCCc-cc--cccceecccc
Confidence 4555555555444 222222 1345555555554442 22211 1245555555555443221 11 2455555555
Q ss_pred CCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccC
Q 035857 283 GNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 362 (404)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 362 (404)
+|.+. .+|..+ +++|+.|++++|.+.. .|..+. ++|+.|++++|.+. .+|..+. .+|+.|++++|++. .+
T Consensus 334 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~L 403 (754)
T PRK15370 334 ENALT-SLPASL--PPELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RL 403 (754)
T ss_pred CCccc-cCChhh--cCcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cC
Confidence 55544 233322 1455555555555542 232221 35555555555554 2333332 24555555555554 22
Q ss_pred Ccc----ccCCCcceEEEccCCeee
Q 035857 363 PSQ----LGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 363 ~~~----~~~~~~L~~l~l~~~~~~ 383 (404)
|.. +..++.+..+++.+|+++
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCcc
Confidence 222 223345555555555553
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.62 E-value=4.2e-15 Score=144.12 Aligned_cols=225 Identities=27% Similarity=0.438 Sum_probs=115.6
Q ss_pred CCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEec
Q 035857 83 NLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLN 162 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (404)
+|+.|++++|.+. .+|..+. .+|+.|++++|.++. ++..+. +.|+.|++++|.+. .++..+. ++|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4455555555444 3333222 245555555554442 222221 24555555555544 2222221 345555555
Q ss_pred CCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCC
Q 035857 163 RNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPI 242 (404)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 242 (404)
+|++.. ++..+ .++|+.|++++|.+.... ..+ .+.|+.|++++|.++. .+.. ..++|+.|++++|.+.. +
T Consensus 271 ~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~-LP~~--l~~sL~~L~Ls~N~Lt~-L 340 (754)
T PRK15370 271 HNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTA-LPET--LPPGLKTLEAGENALTS-L 340 (754)
T ss_pred CCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCcccc-CCcc--ccccceeccccCCcccc-C
Confidence 555542 22222 135555555555544321 111 2356666666666552 2222 12567777777776653 3
Q ss_pred hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhh---
Q 035857 243 PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELM--- 319 (404)
Q Consensus 243 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--- 319 (404)
|..+ +++|+.|++++|++..+ +..+ .++|+.|++++|.+. .+|..+. .+|+.|++++|.+.. .|..+.
T Consensus 341 P~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~-LP~sl~~~~ 411 (754)
T PRK15370 341 PASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVR-LPESLPHFR 411 (754)
T ss_pred Chhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCccc-CchhHHHHh
Confidence 4333 25777777777776633 2222 257777777777765 4444433 367777777777763 333332
Q ss_pred -cCCCccEEEecCcccc
Q 035857 320 -NCSQLLNLVLSHNSLS 335 (404)
Q Consensus 320 -~~~~L~~L~l~~~~~~ 335 (404)
.++.+..+++.+|++.
T Consensus 412 ~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hcCCCccEEEeeCCCcc
Confidence 3467778888888776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=8.6e-17 Score=122.16 Aligned_cols=162 Identities=33% Similarity=0.593 Sum_probs=121.5
Q ss_pred CCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEE
Q 035857 224 YLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSL 303 (404)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 303 (404)
.++.++.|.++.|.++ ..|..+..+.+|+.|+++++++.+ .+..+..+++|+.|++.-|.+. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4556777777777776 555567777778888888877774 3445667778888887777664 677778888888888
Q ss_pred EcCCccccC-CCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCee
Q 035857 304 NLGYNQLNS-SIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNL 382 (404)
Q Consensus 304 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 382 (404)
|+.++++.+ ..|..|..+..|+.|.+.+|++. .+|..++++.+|+.|.+.+|++. ..|..++.+..|++|.+.||.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 888877655 46677777788888888888887 77888888888888888888877 6778888888888888888888
Q ss_pred eeecCCccc
Q 035857 383 SGVIPKSVL 391 (404)
Q Consensus 383 ~~~~~~~~~ 391 (404)
+ ++|..++
T Consensus 186 ~-vlppel~ 193 (264)
T KOG0617|consen 186 T-VLPPELA 193 (264)
T ss_pred e-ecChhhh
Confidence 7 5554433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=5e-16 Score=118.05 Aligned_cols=157 Identities=34% Similarity=0.584 Sum_probs=112.1
Q ss_pred CCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEE
Q 035857 32 SLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSL 111 (404)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 111 (404)
.+.+.+.|.++.++++ ..|..++.+.+|+.|++.+|.++ ..+..++.+++|+.|+++.+++. ..|.+|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4566677777777776 56667777777777777777776 45667777777777777777766 677777777777777
Q ss_pred EccCcccC-CCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccc
Q 035857 112 FLDNNNLT-GPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 112 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
++..+.+. ..+++.|..+..|+-|.++++.+. .++..++++.+|+.|.+..+.+. ..+..++.+.+|++|.+.++.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 77766554 345566667777777777777776 66677777777777777777665 3556677777777777777776
Q ss_pred cCc
Q 035857 191 VGP 193 (404)
Q Consensus 191 ~~~ 193 (404)
+..
T Consensus 186 ~vl 188 (264)
T KOG0617|consen 186 TVL 188 (264)
T ss_pred eec
Confidence 543
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=2.6e-14 Score=120.85 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=79.1
Q ss_pred CCccccEEEecCCCCCCC----CcccccccccceEEEeccccccC----cccccccCccccCeEEeeccccCc----ccC
Q 035857 152 NMKNLKTLLLNRNSLTGP----IPSTLYHLNQLRILYLAYNNLVG----PLSKEVGNLKNLDRLLLNRNNLTG----SIP 219 (404)
Q Consensus 152 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~----~~~ 219 (404)
.-+.|+++....|++.+. ....|...+.|+.+.+..|.+.. .....+..+++|+.|++.+|.++. .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 346777777777766532 22345556777777777776543 234556777788888887777763 233
Q ss_pred cccCCCCCCCEEEccCCccCCCChhhh-----ccCCCcCEEEcCCCccccccC----ccccCCCcCcEEEccCCcc
Q 035857 220 STIGYLNLLDELDLSHNRLDGPIPPTI-----GNLTNLTSLDLSSNQLSGLLP----REVRNLKYLASLSLNGNNL 286 (404)
Q Consensus 220 ~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 286 (404)
..+...++|++|++++|.+......++ ...|.|+++.+.+|.++.... ...+..|.|+.|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 345566677888888877765444333 235666666666666543211 1122234555555555544
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=6.2e-14 Score=118.61 Aligned_cols=188 Identities=17% Similarity=0.151 Sum_probs=112.9
Q ss_pred ccccCccccCeEEeeccccCcccCc----ccCCCCCCCEEEccCCccCCCChhh-------------hccCCCcCEEEcC
Q 035857 196 KEVGNLKNLDRLLLNRNNLTGSIPS----TIGYLNLLDELDLSHNRLDGPIPPT-------------IGNLTNLTSLDLS 258 (404)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~ 258 (404)
.++..+|+|+++++++|.+....+. .+..+.+|++|.+.+|.+....... ...-+.|+++...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3445566777777777766533222 2355677777777777664322222 1234667777777
Q ss_pred CCcccccc----CccccCCCcCcEEEccCCccCCC----CCCcccCCCCccEEEcCCccccCCCC----chhhcCCCccE
Q 035857 259 SNQLSGLL----PREVRNLKYLASLSLNGNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIP----PELMNCSQLLN 326 (404)
Q Consensus 259 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~ 326 (404)
.|.+.+.. ...|...+.|+.+.+..|.+-.. +...+.+|+.|+.||+..|.++..+. ..++.++.|++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 76654322 23445567777777777766422 22345677777777777777665332 33456677777
Q ss_pred EEecCccccccCchhh-----hccccceEEEccCCccccc----CCccccCCCcceEEEccCCeee
Q 035857 327 LVLSHNSLSGSIPSEI-----GNLIHLRQLDLSHNFINGT----IPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 327 L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
|++.+|.+.+.....+ ...|+|+++.+.+|.++.. +..+....+.|+.|++++|.+.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777777765544433 2367777888777777543 2233344677788888888773
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.27 E-value=3e-12 Score=126.49 Aligned_cols=272 Identities=24% Similarity=0.284 Sum_probs=136.1
Q ss_pred CCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcc--ccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCc
Q 035857 32 SLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNK--LDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLD 109 (404)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 109 (404)
.....|...+.++.+. ..+.. ..+++|++|-+.++. +.......|..++.|++|++++|.-...+|+.++++-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 3345566666666554 22222 233466666666664 3334444566667777777766655456666666677777
Q ss_pred EEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCC--CCCcccccccccceEEEecc
Q 035857 110 SLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLT--GPIPSTLYHLNQLRILYLAY 187 (404)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~l~~ 187 (404)
+|+++++.+. .+|..+.++..|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 7777766666 45666666667777776665544344444455677777766654311 11112223344444444432
Q ss_pred ccccCcccccccCccccCe----EEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhh-----c-cCCCcCEEEc
Q 035857 188 NNLVGPLSKEVGNLKNLDR----LLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTI-----G-NLTNLTSLDL 257 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~~----L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~-~~~~L~~L~l 257 (404)
... ...+.+.....|.+ +.+.++.. ......+..+.+++.|.+.+|.+.+...... . .++++..+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 221 11112223333332 22222211 1334455667777778777776653211111 1 1344444444
Q ss_pred CCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccc
Q 035857 258 SSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQL 310 (404)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 310 (404)
.+|.... .+.+....|+|+.+.+..+.......+....+..++.+.+..+.+
T Consensus 755 ~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 755 LNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred hcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 4443321 122223346777777777665544444444445555444444433
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=1.6e-11 Score=121.34 Aligned_cols=318 Identities=25% Similarity=0.304 Sum_probs=198.0
Q ss_pred CCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCcc--ccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCcc
Q 035857 56 NLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQ--LSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLR 133 (404)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 133 (404)
.....|.+.+-++.+... +.. ..+++|++|-+..+. +....++.|..++.|+.|++++|.-...+|..++.+-+|+
T Consensus 521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 346778888877776533 222 235689999998885 5545555688999999999999877778999999999999
Q ss_pred EEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccc--cCcccccccCccccCeEEeec
Q 035857 134 VLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNL--VGPLSKEVGNLKNLDRLLLNR 211 (404)
Q Consensus 134 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~ 211 (404)
+|+++++.+. .+|..+.++..|.+|++..+......+.....+++|+.|.+..... +......+..+.+|+.+++..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999998 7889999999999999998865544455566689999999876541 222233345566666666644
Q ss_pred cccCcccCcccCCCCCC----CEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccC------CCcCcEEEc
Q 035857 212 NNLTGSIPSTIGYLNLL----DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRN------LKYLASLSL 281 (404)
Q Consensus 212 ~~~~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l 281 (404)
.... . ...+...+.| +.+.+.++... .....+..+.+|+.|.+.+|.+.+....+... ++++..+..
T Consensus 678 ~s~~-~-~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSVL-L-LEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chhH-h-HhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 4330 1 1112223333 23333333322 44556778899999999999886543322111 233444444
Q ss_pred cCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccccc-CchhhhccccceEEEccCCcccc
Q 035857 282 NGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
.++... ..+.+....++|+.|.+.+|...+........+..++.+.+..+.+... ......+++++..+.+..-.+..
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~ 833 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEE 833 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhh
Confidence 444332 2223334568999999999977766666666666676666666555432 12233334444444333322111
Q ss_pred cCC---ccccCCCcceEEEccCC
Q 035857 361 TIP---SQLGKITNVSEVDVSKN 380 (404)
Q Consensus 361 ~~~---~~~~~~~~L~~l~l~~~ 380 (404)
... ..++.+|.+.++.+.+|
T Consensus 834 ~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 834 LIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred eehhcCcccccCccccccceecc
Confidence 000 11245566666666665
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.9e-12 Score=110.89 Aligned_cols=210 Identities=25% Similarity=0.252 Sum_probs=134.5
Q ss_pred CCccccEEEecCCCCCCCCc-ccccccccceEEEeccccccCc--ccccccCccccCeEEeeccccCcccCc-ccCCCCC
Q 035857 152 NMKNLKTLLLNRNSLTGPIP-STLYHLNQLRILYLAYNNLVGP--LSKEVGNLKNLDRLLLNRNNLTGSIPS-TIGYLNL 227 (404)
Q Consensus 152 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 227 (404)
++.+|+.+.+.++....+.. .....+++++.|+++.|-+... .......+|+|+.|+++.|.+...... .-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46788888888877653322 3566788888888887755432 223446678888888888876521111 1125677
Q ss_pred CCEEEccCCccCC-CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCC-CCCcccCCCCccEEEc
Q 035857 228 LDELDLSHNRLDG-PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGP-IPPTIGYLTNLTSLNL 305 (404)
Q Consensus 228 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 305 (404)
++.|.++.|.+.. .+...+..+|+|+.|++..|............+..|+.|++++|.+.+. .......++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 8888888887763 2233456778888888888753222233344567788888888877633 2234566788888888
Q ss_pred CCccccCCCC-ch-----hhcCCCccEEEecCcccccc-CchhhhccccceEEEccCCccccc
Q 035857 306 GYNQLNSSIP-PE-----LMNCSQLLNLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFINGT 361 (404)
Q Consensus 306 ~~~~~~~~~~-~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 361 (404)
+.|.+.+... ++ -..+++|+.|++..|++.+. ....+..+++|+.|.+.++.+..+
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 8887765422 21 23567888888888887521 223455667777777777776543
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.6e-12 Score=108.82 Aligned_cols=210 Identities=23% Similarity=0.206 Sum_probs=139.2
Q ss_pred hCCCCccEEEccCCcCCCCCc-hhhcCCccccEEEecCCCCCCC--CcccccccccceEEEeccccccCccc-ccccCcc
Q 035857 127 YHLNQLRVLFLAYNNLVGPLP-REVGNMKNLKTLLLNRNSLTGP--IPSTLYHLNQLRILYLAYNNLVGPLS-KEVGNLK 202 (404)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~ 202 (404)
.++.+|+.+.+.++.+..... .....+++++.|++++|-+... .......+|+|+.|+++.|.+..... ..-...+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356778888887777664332 3445688888999888865532 22334568888888888887653322 2223578
Q ss_pred ccCeEEeeccccCc-ccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCcccccc-CccccCCCcCcEEE
Q 035857 203 NLDRLLLNRNNLTG-SIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLL-PREVRNLKYLASLS 280 (404)
Q Consensus 203 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 280 (404)
.++.|.++.|.+++ ........+|++++|.+++|...........-+..|+.|+|++|++.+.. ....+.+|.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 88888888888763 23334567888888888888432222333445677888889888876443 23456678888888
Q ss_pred ccCCccCCCCCCcc------cCCCCccEEEcCCccccCC-CCchhhcCCCccEEEecCccccc
Q 035857 281 LNGNNLIGPIPPTI------GYLTNLTSLNLGYNQLNSS-IPPELMNCSQLLNLVLSHNSLSG 336 (404)
Q Consensus 281 l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 336 (404)
++.+.+.+...... ..+++|++|++..|++.+- ....+...++|+.+.+..+.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 88888875433333 4578889999988887542 22334556778888877776653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.08 E-value=1.4e-10 Score=92.20 Aligned_cols=126 Identities=26% Similarity=0.280 Sum_probs=43.9
Q ss_pred ccCCCcCEEEcCCCccccccCcccc-CCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCcc
Q 035857 247 GNLTNLTSLDLSSNQLSGLLPREVR-NLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLL 325 (404)
Q Consensus 247 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 325 (404)
.++..+++|++.+++++.+. .+. .+.+|+.|++++|.+.+. ..+..++.|+.|++++|.++.........+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 34456788888888877543 233 467788888888887632 2466678888888888888754322224578888
Q ss_pred EEEecCcccccc-CchhhhccccceEEEccCCcccccCC---ccccCCCcceEEE
Q 035857 326 NLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFINGTIP---SQLGKITNVSEVD 376 (404)
Q Consensus 326 ~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~ 376 (404)
+|++++|.+.+. ....+..+++|+.|++.+|+++.... ..+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888888877643 22455677888888888887764321 2334577777777
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=2.9e-10 Score=90.30 Aligned_cols=125 Identities=30% Similarity=0.327 Sum_probs=42.6
Q ss_pred CCCCCCEEEccCCccCCCChhhhc-cCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcc-cCCCCcc
Q 035857 224 YLNLLDELDLSHNRLDGPIPPTIG-NLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTI-GYLTNLT 301 (404)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 301 (404)
.+.++++|++.++.+..+ +.+. .+..|+.|++++|.++++. .+..++.|+.|++++|.+++ +...+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 344567777777766532 2333 3566777777777776543 35566777777777777763 33233 3567777
Q ss_pred EEEcCCccccCCCC-chhhcCCCccEEEecCccccccCc---hhhhccccceEEEc
Q 035857 302 SLNLGYNQLNSSIP-PELMNCSQLLNLVLSHNSLSGSIP---SEIGNLIHLRQLDL 353 (404)
Q Consensus 302 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 353 (404)
+|.+++|.+.+... ..+..+++|+.|++.+|++.+... ..+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777765322 455677788888888887764322 22466788887764
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=2.3e-10 Score=95.43 Aligned_cols=131 Identities=26% Similarity=0.340 Sum_probs=89.5
Q ss_pred CCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEe
Q 035857 250 TNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVL 329 (404)
Q Consensus 250 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 329 (404)
+.|+.+++++|.++. +.....-.|+++.|+++.|.+. .+.. +..+++|+.||+++|.++.. ...-.++.+.+.|++
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 567788888887763 3344555678888888888776 3222 66678888888888877642 222346677888888
Q ss_pred cCccccccCchhhhccccceEEEccCCccccc-CCccccCCCcceEEEccCCeeeeec
Q 035857 330 SHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT-IPSQLGKITNVSEVDVSKNNLSGVI 386 (404)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~ 386 (404)
++|.+.+. ..+..+.+|..|++.+|+|.+. -...++++|-|+.+.+.+||+....
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88877533 5667777888888888877532 2345677888888888888887443
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.6e-10 Score=96.26 Aligned_cols=130 Identities=32% Similarity=0.345 Sum_probs=92.9
Q ss_pred CCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEc
Q 035857 226 NLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305 (404)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 305 (404)
.-|+++++++|.++ .+..+..-.|.++.|+++.|.+.... .++.+++|..|++++|.++ .+..+-.++-++++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45788888888776 44556677788888888888876443 2677788888888888876 33444445678888888
Q ss_pred CCccccCCCCchhhcCCCccEEEecCcccccc-CchhhhccccceEEEccCCccccc
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFINGT 361 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~ 361 (404)
++|.+.+. .++.++=+|..|++++|++... ....++++|.|+.+.+.+|++...
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88877543 3455666788888888877632 234577888888888888887743
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=1.2e-09 Score=71.33 Aligned_cols=61 Identities=36% Similarity=0.511 Sum_probs=43.2
Q ss_pred CCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCee
Q 035857 322 SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNL 382 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 382 (404)
|+|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4667777777777755556667777777777777777766667777777777777777764
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.5e-09 Score=100.43 Aligned_cols=177 Identities=38% Similarity=0.545 Sum_probs=76.0
Q ss_pred cccceEEEeccccccCcccccccCc-cccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEE
Q 035857 177 LNQLRILYLAYNNLVGPLSKEVGNL-KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSL 255 (404)
Q Consensus 177 ~~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 255 (404)
.+.+..+.+..+.++.... ..... ++|+.|+++++.+. ..+..+..+++|+.|++++|++.. .+......+.|+.+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 3455566665555543322 22223 25555555555554 222234445555555555555542 22222244555555
Q ss_pred EcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccc
Q 035857 256 DLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 335 (404)
+++++++.++... ......|+++.++++... ..+..+..+.++..+.+.++.+... +..+..++.++.|++++|.+.
T Consensus 192 ~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKISDLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccccCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence 5555555433221 122233555555555322 2233334444444444444444321 233334444444444444444
Q ss_pred ccCchhhhccccceEEEccCCccccc
Q 035857 336 GSIPSEIGNLIHLRQLDLSHNFINGT 361 (404)
Q Consensus 336 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 361 (404)
+... +....+++.|+++++.+...
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccc--ccccCccCEEeccCcccccc
Confidence 2211 44444444444444444433
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.6e-09 Score=69.73 Aligned_cols=60 Identities=45% Similarity=0.560 Sum_probs=36.9
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcc
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNK 69 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 69 (404)
|+|++|++++|++....+++|..+++|++|++++|.++.+.+.+|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666665555566666666666666666655555566666666666666554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.1e-10 Score=105.23 Aligned_cols=210 Identities=30% Similarity=0.445 Sum_probs=128.4
Q ss_pred EEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCc
Q 035857 182 ILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQ 261 (404)
Q Consensus 182 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 261 (404)
..+++.|.+.. .++.+..+..|+.+.++.|.+. ..+.....+..|+-++++.|++. ..|..+..+| |+.+.+++|+
T Consensus 79 ~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 34455555442 2344455566677777666655 44555666677777777777765 4555555554 7777777777
Q ss_pred cccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchh
Q 035857 262 LSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSE 341 (404)
Q Consensus 262 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 341 (404)
++. .+..+...+.|..++++.|.+. .+++-+.++.+|+.|++..|.+.. .|..+. .-.|..|+++.|++. .+|-.
T Consensus 155 l~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ecchh
Confidence 763 3344446677777777777775 556666777777777777777763 444444 346777777777777 67777
Q ss_pred hhccccceEEEccCCcccccCCccccC--C-CcceEEEccCCe-------eeeecCCcccccCcceeccC
Q 035857 342 IGNLIHLRQLDLSHNFINGTIPSQLGK--I-TNVSEVDVSKNN-------LSGVIPKSVLRVPGLKWSEN 401 (404)
Q Consensus 342 ~~~~~~L~~L~l~~~~~~~~~~~~~~~--~-~~L~~l~l~~~~-------~~~~~~~~~~~~~~l~~~~~ 401 (404)
|..+..|++|.|.+|++. ..|..+.. . .=-|+|+..-|+ .+..=|..|..|.....+++
T Consensus 230 fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q~~~a~~~~t~~RP~~~~~c~~ed~s~~ 298 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQSGGALDLYTTLRPRHFSSCHVEDASGN 298 (722)
T ss_pred hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhccccCCcccccccCCcccCCcchhhhccC
Confidence 777777777777777776 45544432 1 223666666662 11122444666665554443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6.5e-11 Score=98.46 Aligned_cols=176 Identities=23% Similarity=0.172 Sum_probs=78.7
Q ss_pred cceEEEeccccccCc-ccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCC--ChhhhccCCCcCEE
Q 035857 179 QLRILYLAYNNLVGP-LSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGP--IPPTIGNLTNLTSL 255 (404)
Q Consensus 179 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L 255 (404)
.++.++++...++.. ....+..|++|+.|.+.+.++.+.....++.-.+|+.|+++.|..-.. ....+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355566655554432 122344556666666666655544444455555666666665532211 12234555666666
Q ss_pred EcCCCcccccc-CccccC-CCcCcEEEccCCccC---CCCCCcccCCCCccEEEcCCcc-ccCCCCchhhcCCCccEEEe
Q 035857 256 DLSSNQLSGLL-PREVRN-LKYLASLSLNGNNLI---GPIPPTIGYLTNLTSLNLGYNQ-LNSSIPPELMNCSQLLNLVL 329 (404)
Q Consensus 256 ~l~~~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 329 (404)
+++.|...... ...+.. -++|..|+++|+... +.+.--..+||.|.+||++.|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66555432111 111111 145555555555421 0111112345555555555542 22212233445555555555
Q ss_pred cCccccccCchh---hhccccceEEEccCC
Q 035857 330 SHNSLSGSIPSE---IGNLIHLRQLDLSHN 356 (404)
Q Consensus 330 ~~~~~~~~~~~~---~~~~~~L~~L~l~~~ 356 (404)
+.|=-. .|+. +...|+|.+|++-||
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 555321 2221 233455555555544
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=8.2e-09 Score=100.13 Aligned_cols=106 Identities=37% Similarity=0.569 Sum_probs=55.7
Q ss_pred CcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccC
Q 035857 276 LASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSH 355 (404)
Q Consensus 276 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 355 (404)
++.|+++++.+...++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+...+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555444555555555555555555555544555555555555555555555555555555555555555555
Q ss_pred CcccccCCccccCC-CcceEEEccCCe
Q 035857 356 NFINGTIPSQLGKI-TNVSEVDVSKNN 381 (404)
Q Consensus 356 ~~~~~~~~~~~~~~-~~L~~l~l~~~~ 381 (404)
|.+.+.+|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 55555555544432 234455555554
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=1.4e-08 Score=93.94 Aligned_cols=198 Identities=37% Similarity=0.489 Sum_probs=140.6
Q ss_pred EEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCC-CCcEEEccCccccCCCccccCCCCCCcEEEccCc
Q 035857 38 KLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLT-NLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNN 116 (404)
Q Consensus 38 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 116 (404)
.+....+.+. .....+...+.++.+++.++.+.+. +....... +|+.|+++++.+. .++..++.+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 2334455567888999988888743 44444553 8999999998887 55567788899999999999
Q ss_pred ccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccc
Q 035857 117 NLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSK 196 (404)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 196 (404)
.+.. .+......+.|+.|+++++.+.+. +........|+++.++++.... ....+..+.++..+.+..+.+... ..
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeec-cc
Confidence 8873 344444778899999999988843 3333455669999999885332 334566777777777766665432 45
Q ss_pred cccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChh
Q 035857 197 EVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPP 244 (404)
Q Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (404)
.++.++++++|++++|.+.+... +....+++.|+++++.+....+.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 67788889999999998874433 77888999999999887754443
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.75 E-value=2.1e-08 Score=97.28 Aligned_cols=104 Identities=32% Similarity=0.557 Sum_probs=89.7
Q ss_pred CccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEcc
Q 035857 299 NLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVS 378 (404)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 378 (404)
.++.|+++++.+.+..+..+..+++|+.|++++|.+...+|..+..+++|+.|++++|.+++.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999988888889999999999999999988888889999999999999999999999999999999999999
Q ss_pred CCeeeeecCCcccc----cCcceeccCc
Q 035857 379 KNNLSGVIPKSVLR----VPGLKWSENN 402 (404)
Q Consensus 379 ~~~~~~~~~~~~~~----~~~l~~~~~~ 402 (404)
+|++++.+|..+.+ ...+.+.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99999999976553 2344455553
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=5.1e-10 Score=101.14 Aligned_cols=195 Identities=27% Similarity=0.394 Sum_probs=144.4
Q ss_pred CccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEE
Q 035857 153 MKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELD 232 (404)
Q Consensus 153 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 232 (404)
+..-...+++.|++. ..+..+..+..|+.+.+..+.+- ..++.+..+..|.+++++.|++. ..+..+..++ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344455677778776 45566777777888777766554 34566778888999999998886 4555555555 88899
Q ss_pred ccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccC
Q 035857 233 LSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 312 (404)
Q Consensus 233 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (404)
+++|+++ .+|..+...+.|..|+.+.|.+.. .+..+.++.+|+.+.+..|.+. .+|+.+. .-.|..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 9988887 667777888899999999998874 4455677889999999988876 4455454 456888999999887
Q ss_pred CCCchhhcCCCccEEEecCccccccCchhhh---ccccceEEEccCCc
Q 035857 313 SIPPELMNCSQLLNLVLSHNSLSGSIPSEIG---NLIHLRQLDLSHNF 357 (404)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 357 (404)
.+|..|..+..|++|-+.+|.+. .-|-.++ ...-.++|+..-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78888999999999999999987 3444443 23345677777774
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2e-10 Score=95.63 Aligned_cols=176 Identities=24% Similarity=0.234 Sum_probs=82.0
Q ss_pred CccEEEccCCcCCC-CCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEecccc-ccCc-ccccccCccccCeE
Q 035857 131 QLRVLFLAYNNLVG-PLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNN-LVGP-LSKEVGNLKNLDRL 207 (404)
Q Consensus 131 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~-~~~~~~~~~~L~~L 207 (404)
.|+++|++...++. .+...+..|++|+.|.++|.++.+.....++.-.+|+.++++.+. ++.. ....+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666666555442 222334455666666666665554444445555556666666543 2211 12234555666666
Q ss_pred EeeccccC-cccCccc-CCCCCCCEEEccCCccCC---CChhhhccCCCcCEEEcCCCcc-ccccCccccCCCcCcEEEc
Q 035857 208 LLNRNNLT-GSIPSTI-GYLNLLDELDLSHNRLDG---PIPPTIGNLTNLTSLDLSSNQL-SGLLPREVRNLKYLASLSL 281 (404)
Q Consensus 208 ~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l 281 (404)
++++|... +...... .--++|+.|+++|++-.- ....-...||+|.+||+++|.. +......+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66665433 1111111 123455566666653210 1111123456666666665542 2222233444555566655
Q ss_pred cCCccCCCCCC---cccCCCCccEEEcCCc
Q 035857 282 NGNNLIGPIPP---TIGYLTNLTSLNLGYN 308 (404)
Q Consensus 282 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 308 (404)
+.|... .|. .+...|+|.+|++.+|
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 555532 111 2334455555555555
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=4.3e-10 Score=97.90 Aligned_cols=293 Identities=20% Similarity=0.111 Sum_probs=149.3
Q ss_pred CCcEEEccCccccCC--CccccCCCCCCcEEEccCcc-cCCCChhhh-hCCCCccEEEccCC-cCCCCCch-hhcCCccc
Q 035857 83 NLTSLNLSLNQLSGR--LPQEVGNLKNLDSLFLDNNN-LTGPIPSTL-YHLNQLRVLFLAYN-NLVGPLPR-EVGNMKNL 156 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~L 156 (404)
-|+.|.+.++.-... +-..-..+|++++|.+.+|. +++..-..+ ..+++|+++++..| .+++...+ ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455666665542211 11222356667777666664 221111112 24667777777663 33332222 23356777
Q ss_pred cEEEecCC-CCCCC-CcccccccccceEEEeccccccCc--ccccccCccccCeEEeeccc-cCcc-cCcccCCCCCCCE
Q 035857 157 KTLLLNRN-SLTGP-IPSTLYHLNQLRILYLAYNNLVGP--LSKEVGNLKNLDRLLLNRNN-LTGS-IPSTIGYLNLLDE 230 (404)
Q Consensus 157 ~~L~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~ 230 (404)
++++++.| .+.+. ....+.++..++.+...+|.-... ....-+.++.+..+++..|. +++. ....-..+..++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 77777776 33321 112334555555555554421110 11112345556666665553 3321 1112235667777
Q ss_pred EEccCCccCC-CChhhh-ccCCCcCEEEcCCCc-cccccCccc-cCCCcCcEEEccCCccCCC--CCCcccCCCCccEEE
Q 035857 231 LDLSHNRLDG-PIPPTI-GNLTNLTSLDLSSNQ-LSGLLPREV-RNLKYLASLSLNGNNLIGP--IPPTIGYLTNLTSLN 304 (404)
Q Consensus 231 L~l~~~~~~~-~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 304 (404)
+..+++.... ....++ +++++|+.+.+..|+ +++.....+ .+++.|+.+++.++..... +...-.+|+.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7777764321 111222 567788888887775 333332223 3357777777777754322 222234577788887
Q ss_pred cCCcc-ccCCCCc----hhhcCCCccEEEecCcccc-ccCchhhhccccceEEEccCC-cccccCCccc-cCCCcceEE
Q 035857 305 LGYNQ-LNSSIPP----ELMNCSQLLNLVLSHNSLS-GSIPSEIGNLIHLRQLDLSHN-FINGTIPSQL-GKITNVSEV 375 (404)
Q Consensus 305 l~~~~-~~~~~~~----~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~l 375 (404)
++.|. +++.+.. .-+....|+.+.+++|+.. +...+.+..|++|+.+++.+| +++.+....| .++|+++..
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 77774 3332222 2234567777777777654 334455566777777777777 4444433344 345555543
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=3.3e-09 Score=98.32 Aligned_cols=197 Identities=30% Similarity=0.371 Sum_probs=109.4
Q ss_pred cccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCE
Q 035857 175 YHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTS 254 (404)
Q Consensus 175 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 254 (404)
..+..++.++++.+.+.. ....+..+++++.+++.++.+... ...+..+++|+.|++++|.+... ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhh
Confidence 345556666666655543 123355667777777777776522 22245566777777777766543 23445555777
Q ss_pred EEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCc-ccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcc
Q 035857 255 LDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPT-IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNS 333 (404)
Q Consensus 255 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (404)
|++.+|.+.++. .+..++.|+.+++++|.+...-. . ...+.+++.+.+.++.+... ..+..+..+..+++..+.
T Consensus 145 L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhcc--CCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 777777665432 23345667777777776653222 1 35556666666666666533 222333344444566665
Q ss_pred ccccCchhhhccc--cceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 334 LSGSIPSEIGNLI--HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 334 ~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
+.... .+.... +|+.+++.++.+.. .+..+..+..+..++++++.+.
T Consensus 220 i~~~~--~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKLE--GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceecc--CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 55331 122222 26777777776653 2244556666677777766664
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.57 E-value=9.8e-09 Score=84.63 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred ccccCccccCeEEeeccccCcccCc----ccCCCCCCCEEEccCCccCCCChh----hh---------ccCCCcCEEEcC
Q 035857 196 KEVGNLKNLDRLLLNRNNLTGSIPS----TIGYLNLLDELDLSHNRLDGPIPP----TI---------GNLTNLTSLDLS 258 (404)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~----~l---------~~~~~L~~L~l~ 258 (404)
.++..||+|+.+++++|.+....+. .++..+.|++|.+++|.+-.+... ++ ..-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3445666666666666665432222 234456677777777755332211 11 223667777766
Q ss_pred CCccccccC----ccccCCCcCcEEEccCCccCCC-----CCCcccCCCCccEEEcCCccccCCCC----chhhcCCCcc
Q 035857 259 SNQLSGLLP----REVRNLKYLASLSLNGNNLIGP-----IPPTIGYLTNLTSLNLGYNQLNSSIP----PELMNCSQLL 325 (404)
Q Consensus 259 ~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~ 325 (404)
.|.+..... ..+..-..|+.+.+..|.+... +...+.++++|+.|++..|.++..+. ..++.++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 665542211 1222335677777777665422 11123456777777777776664322 3345566777
Q ss_pred EEEecCccccccCchhh------hccccceEEEccCCcccccCCcc-----c--cCCCcceEEEccCCeee
Q 035857 326 NLVLSHNSLSGSIPSEI------GNLIHLRQLDLSHNFINGTIPSQ-----L--GKITNVSEVDVSKNNLS 383 (404)
Q Consensus 326 ~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~-----~--~~~~~L~~l~l~~~~~~ 383 (404)
+|.+..|-++......+ ...|+|..|...+|.+.+..... | ..+|-|..+.++||.+.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 77777776664433322 12577777777777654332222 1 24677777777777775
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1e-08 Score=85.61 Aligned_cols=227 Identities=26% Similarity=0.247 Sum_probs=139.6
Q ss_pred CCCcccEEeCCCccccCCCC-ccc-CCCCCCcEEEeCCcccccc--CCCcccCCCCCcEEEccCccccCCCccccCCCCC
Q 035857 32 SLRNLLKLDLTNNILNGSIP-LEF-GNLKDLDELRLQGNKLDGL--IPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKN 107 (404)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 107 (404)
....++.+.+.++.+..+.. ..| ..+.+++.+++.+|.+.+. +...+..+|.|++|+++.|.+...+..--....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 33444566666666542221 112 3678899999999988632 3445678899999999998876332221135678
Q ss_pred CcEEEccCcccCC-CChhhhhCCCCccEEEccCCcCCCCCch--hhc-CCccccEEEecCCCCCC--CCcccccccccce
Q 035857 108 LDSLFLDNNNLTG-PIPSTLYHLNQLRVLFLAYNNLVGPLPR--EVG-NMKNLKTLLLNRNSLTG--PIPSTLYHLNQLR 181 (404)
Q Consensus 108 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~-~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~ 181 (404)
|+.|.+.++.+.- .....+..+|+++.++++.|.......+ ... ..+.+++++..+|.... ........+|++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 8999888886653 2234556788889998888744321111 111 23567777777774431 1112234578888
Q ss_pred EEEeccccccCc-ccccccCccccCeEEeeccccCc-ccCcccCCCCCCCEEEccCCccCCCCh------hhhccCCCcC
Q 035857 182 ILYLAYNNLVGP-LSKEVGNLKNLDRLLLNRNNLTG-SIPSTIGYLNLLDELDLSHNRLDGPIP------PTIGNLTNLT 253 (404)
Q Consensus 182 ~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~------~~l~~~~~L~ 253 (404)
.+-+..+.+... ....+..+|.+-.|+++.+++.+ .....+..+++|+.|+++.+++..... -.+..+++++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ 282 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence 888888766443 23445667777788888887752 223356778889999988887754221 1234556666
Q ss_pred EEEcC
Q 035857 254 SLDLS 258 (404)
Q Consensus 254 ~L~l~ 258 (404)
.|+=+
T Consensus 283 vLNGs 287 (418)
T KOG2982|consen 283 VLNGS 287 (418)
T ss_pred EecCc
Confidence 66443
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=7.4e-10 Score=96.44 Aligned_cols=291 Identities=18% Similarity=0.116 Sum_probs=143.8
Q ss_pred CCcEEEccCcccCC--CChhhhhCCCCccEEEccCCcC-CCCCc-hhhcCCccccEEEecCC-CCCCCCcc-cccccccc
Q 035857 107 NLDSLFLDNNNLTG--PIPSTLYHLNQLRVLFLAYNNL-VGPLP-REVGNMKNLKTLLLNRN-SLTGPIPS-TLYHLNQL 180 (404)
Q Consensus 107 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~L 180 (404)
.|+.+.+.++.-.. .......++|++++|.+.++.- ++..- ..-..+++|+.+++..| .++..... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 35555555553221 1112333556666666655542 11111 11123566666666664 33322111 22345666
Q ss_pred eEEEeccccc-cCc-ccccccCccccCeEEeeccccCc--ccCcccCCCCCCCEEEccCCccCCC--ChhhhccCCCcCE
Q 035857 181 RILYLAYNNL-VGP-LSKEVGNLKNLDRLLLNRNNLTG--SIPSTIGYLNLLDELDLSHNRLDGP--IPPTIGNLTNLTS 254 (404)
Q Consensus 181 ~~l~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~ 254 (404)
+.++++++.- ... ......++..++.+...+|.-.+ .+...-+.++-+.++++..|..... +...-..+..|++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 6666666542 111 11123444555555555442110 1111112344455555555532211 1122245667777
Q ss_pred EEcCCCc-cccccCc-cccCCCcCcEEEccCCccCCC-CCCcc-cCCCCccEEEcCCccccCC--CCchhhcCCCccEEE
Q 035857 255 LDLSSNQ-LSGLLPR-EVRNLKYLASLSLNGNNLIGP-IPPTI-GYLTNLTSLNLGYNQLNSS--IPPELMNCSQLLNLV 328 (404)
Q Consensus 255 L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 328 (404)
++.+++. +++.... .-.++++|+.+-+++|+..+. -...+ ..++.|+.+++..|..... ....-..|+.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 7776654 2322222 225567888888887764322 11112 3467888888887744322 222234678888888
Q ss_pred ecCccccccC-----chhhhccccceEEEccCCccc-ccCCccccCCCcceEEEccCCee-eeecCC-cccccCcce
Q 035857 329 LSHNSLSGSI-----PSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKITNVSEVDVSKNNL-SGVIPK-SVLRVPGLK 397 (404)
Q Consensus 329 l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~-~~~~~~~l~ 397 (404)
++.|...... ...-+....|+.+.+++|+.+ +...+.+..|++|+.+++.+|+- +.+..+ .-..|++++
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~ 455 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK 455 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce
Confidence 8887543221 122245677888888888654 33445567788888888888864 322222 233555555
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.54 E-value=2.8e-07 Score=70.70 Aligned_cols=125 Identities=20% Similarity=0.280 Sum_probs=57.4
Q ss_pred CccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccc
Q 035857 267 PREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLI 346 (404)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 346 (404)
..+|.++++|+.+.+.. .+.......|..+++|+.+.+... +.......|..+++++.+.+.+ .+.......|..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34455556666666653 222233445666666777766663 4444555666666677777755 44334445666677
Q ss_pred cceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcce
Q 035857 347 HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397 (404)
Q Consensus 347 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 397 (404)
+|+.+.+..+ +.......|.++ .|+++.+.+ .++......|.+|+.||
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7777777654 444555667776 777777765 55545566777777765
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.52 E-value=1.4e-08 Score=94.27 Aligned_cols=241 Identities=29% Similarity=0.361 Sum_probs=107.7
Q ss_pred CCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEE
Q 035857 33 LRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLF 112 (404)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 112 (404)
+..++.+.+..+.+.. ....+..+.+|+.+++.++.+... ...+..+++|++|++++|.|... ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 3444444455544432 122244555666666666655532 11244556666666666655422 3344455566666
Q ss_pred ccCcccCCCChhhhhCCCCccEEEccCCcCCCCCc-hhhcCCccccEEEecCCCCCCCCcccccccccceEEEecccccc
Q 035857 113 LDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLP-REVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV 191 (404)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 191 (404)
+.+|.+... ..+..++.|+.++++++.+..... . ...+.+++.+.+.++.+.... .+..+..+..+++..+.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence 666655422 233345566666666666554322 1 345566666666666554221 1222222222344444333
Q ss_pred CcccccccCcc--ccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccc---c
Q 035857 192 GPLSKEVGNLK--NLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGL---L 266 (404)
Q Consensus 192 ~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~ 266 (404)
.... +.... .|+.+.++.+.+.. .+..+.....+..+++..+++... ..+...+.+..+....+++... .
T Consensus 222 ~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 222 KLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred eccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhh
Confidence 2111 11111 25555555555441 112334445555666665554321 2223333344444444433211 0
Q ss_pred Cc-cccCCCcCcEEEccCCccC
Q 035857 267 PR-EVRNLKYLASLSLNGNNLI 287 (404)
Q Consensus 267 ~~-~~~~~~~L~~L~l~~~~~~ 287 (404)
.. .....+.++.+.+.++...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred ccccccccccccccccccCccc
Confidence 01 1233455666666655544
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=9.1e-09 Score=84.80 Aligned_cols=219 Identities=19% Similarity=0.219 Sum_probs=106.0
Q ss_pred CCcccEEeCCCccccCC----CCcccCCCCCCcEEEeCCcccc---c-------cCCCcccCCCCCcEEEccCccccCCC
Q 035857 33 LRNLLKLDLTNNILNGS----IPLEFGNLKDLDELRLQGNKLD---G-------LIPSSIGNLTNLTSLNLSLNQLSGRL 98 (404)
Q Consensus 33 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~ 98 (404)
+..++.+++++|.+... +...++.-.+|+..++++-... + ....++.+||+|+.+++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45666666666666422 1122344456666665543111 0 01223345556666666655554333
Q ss_pred cc----ccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCc---
Q 035857 99 PQ----EVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIP--- 171 (404)
Q Consensus 99 ~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--- 171 (404)
|+ .++.-+.|++|.+.+|.+......-++. .|.+|- ..+-...-|.|+++.+..|++.+...
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la---------~nKKaa~kp~Le~vicgrNRlengs~~~~ 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA---------YNKKAADKPKLEVVICGRNRLENGSKELS 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH---------HHhhhccCCCceEEEeccchhccCcHHHH
Confidence 32 2334445555555555443221111110 000000 00111234677777777766643211
Q ss_pred -ccccccccceEEEeccccccCc-----ccccccCccccCeEEeeccccCcc----cCcccCCCCCCCEEEccCCccCCC
Q 035857 172 -STLYHLNQLRILYLAYNNLVGP-----LSKEVGNLKNLDRLLLNRNNLTGS----IPSTIGYLNLLDELDLSHNRLDGP 241 (404)
Q Consensus 172 -~~~~~~~~L~~l~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 241 (404)
..+....+|+.+.+..|.+... ....+..+.+|+.|++.+|.++.. +...+...+.|++|.+.+|-+...
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccc
Confidence 1122335677777777766432 222334567788888888777632 122334445678888888766544
Q ss_pred Chhhh------ccCCCcCEEEcCCCcc
Q 035857 242 IPPTI------GNLTNLTSLDLSSNQL 262 (404)
Q Consensus 242 ~~~~l------~~~~~L~~L~l~~~~~ 262 (404)
...++ ...|+|..|....+.+
T Consensus 258 G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 258 GVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cHHHHHHHhhhhcCCCccccccchhhh
Confidence 33222 2346666666666544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=5.7e-08 Score=81.28 Aligned_cols=106 Identities=23% Similarity=0.232 Sum_probs=49.5
Q ss_pred CCcEEEccCcccCCCCh-hhhh-CCCCccEEEccCCcCCCC--CchhhcCCccccEEEecCCCCCCCCcccccccccceE
Q 035857 107 NLDSLFLDNNNLTGPIP-STLY-HLNQLRVLFLAYNNLVGP--LPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRI 182 (404)
Q Consensus 107 ~L~~L~l~~~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 182 (404)
-++.+.+.++.+..... ..++ .++.++.+|+.+|.+.+. ....+.++|.|++|+++.|.+............+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34445555554442211 1222 356677777777776631 1223345667777777666655322111123345555
Q ss_pred EEeccccccCcc-cccccCccccCeEEeecc
Q 035857 183 LYLAYNNLVGPL-SKEVGNLKNLDRLLLNRN 212 (404)
Q Consensus 183 l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 212 (404)
+-+.++.+.-.. ...+...|.++.|.++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 555554432111 112233455555555554
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.38 E-value=1.7e-06 Score=66.22 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=54.0
Q ss_pred cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
+|.++++|+.+.+.. .+......+|.++++|+.+.+... +..+...+|..+++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466777777777653 455556666667766777777664 4445555666666677777754 3333444566666667
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCc
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL 132 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 132 (404)
+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666543 332334455555 666666554 2232333444444444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=7e-09 Score=96.64 Aligned_cols=126 Identities=31% Similarity=0.270 Sum_probs=75.5
Q ss_pred CCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCC-cccCCCCccEEEc
Q 035857 227 LLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPP-TIGYLTNLTSLNL 305 (404)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 305 (404)
.|...++++|++. ....++.-++.++.|+++.|++++.. .+..+++|++|+++.|.+. .+|. ....|. |..|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 3566666666665 34455666677777777777776543 5666677777777777664 2222 122333 677777
Q ss_pred CCccccCCCCchhhcCCCccEEEecCcccccc-CchhhhccccceEEEccCCccc
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
++|.++.. ..+.++.+|+.|+++.|-+.+. -.+.++.+..|+.|+|.||++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77766543 3456666777777777655432 1223455666677777777654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.8e-08 Score=94.02 Aligned_cols=197 Identities=29% Similarity=0.329 Sum_probs=121.2
Q ss_pred CCCccEEEccCCcCCC-CCchhhcCCccccEEEecCCCCCCCCccccccc-ccceEEEeccccccCccccc-------cc
Q 035857 129 LNQLRVLFLAYNNLVG-PLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHL-NQLRILYLAYNNLVGPLSKE-------VG 199 (404)
Q Consensus 129 l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~-------~~ 199 (404)
+++++.+.+......+ ..+-.+..+..|+.|.+.+|.+.... . +..+ .+|++|--. +... +..+. +.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~-G-L~~lr~qLe~LIC~-~Sl~-Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK-G-LQELRHQLEKLICH-NSLD-ALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh-h-hHHHHHhhhhhhhh-ccHH-HHHHHHHHhccccc
Confidence 4445555443332222 11445566788888888888776311 1 1111 234444221 2111 00111 11
Q ss_pred Cc---cccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcC
Q 035857 200 NL---KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYL 276 (404)
Q Consensus 200 ~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 276 (404)
+- -.|.+.+++.|.++ .++..+.-++.++.|+++.|++... ..+..++.|++|||+.|++.........++. |
T Consensus 159 ns~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-h
Confidence 11 24677777788776 5566777788889999998888643 3778888999999998888755443334444 8
Q ss_pred cEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCC-chhhcCCCccEEEecCcccc
Q 035857 277 ASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP-PELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 277 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 335 (404)
..|.+++|.+.+. ..+.++.+|+.||+++|-+.+... ..+..+..|..|.+.||++-
T Consensus 235 ~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888888887632 346677888889998886654321 23445678888889998875
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.06 E-value=1.8e-07 Score=89.13 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=10.7
Q ss_pred ccCCCCccEEEcCCcccc
Q 035857 294 IGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~ 311 (404)
..+++.++.+.+..+...
T Consensus 358 ~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred HhcCCCcchhhhhhhhcc
Confidence 345666666666666533
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=1.5e-06 Score=84.56 Aligned_cols=152 Identities=23% Similarity=0.237 Sum_probs=84.5
Q ss_pred cccCeEEeeccccC-cccC-cccCCCCCCCEEEccCCccCC-CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcE
Q 035857 202 KNLDRLLLNRNNLT-GSIP-STIGYLNLLDELDLSHNRLDG-PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLAS 278 (404)
Q Consensus 202 ~~L~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 278 (404)
.+|+.|++++...- ...+ ..-..+|+|++|.+.+-.+.. .+.....++|+|..||+++++++.. ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666654321 1111 122356777777777755432 2334456677777777777777644 45566777777
Q ss_pred EEccCCccCC-CCCCcccCCCCccEEEcCCccccCCC--C----chhhcCCCccEEEecCccccccCchhh-hccccceE
Q 035857 279 LSLNGNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSSI--P----PELMNCSQLLNLVLSHNSLSGSIPSEI-GNLIHLRQ 350 (404)
Q Consensus 279 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~ 350 (404)
|.+.+-.+.+ .....+..+++|+.||++........ . ++...+|.|+.|+.++..+...+.+.+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7776665542 11223445677777777776443221 0 112246777777777776665544443 33455555
Q ss_pred EEccC
Q 035857 351 LDLSH 355 (404)
Q Consensus 351 L~l~~ 355 (404)
+..-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 54443
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=3.8e-05 Score=61.07 Aligned_cols=103 Identities=28% Similarity=0.349 Sum_probs=51.3
Q ss_pred CcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCC-CchhhcCCCccEEEe
Q 035857 251 NLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI-PPELMNCSQLLNLVL 329 (404)
Q Consensus 251 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 329 (404)
....+++++|.+... ..|+.++.|..|.+.+|.++...+.--..++.|+.|.+.+|.+.... ...+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 345566666655432 23455566666666666665332222223455666666665554321 133445556666666
Q ss_pred cCccccccCch---hhhccccceEEEccC
Q 035857 330 SHNSLSGSIPS---EIGNLIHLRQLDLSH 355 (404)
Q Consensus 330 ~~~~~~~~~~~---~~~~~~~L~~L~l~~ 355 (404)
-+|++....-. .++.+|+|+.|++..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 66655432221 234455555555544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1e-05 Score=48.22 Aligned_cols=36 Identities=36% Similarity=0.669 Sum_probs=19.0
Q ss_pred cceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 347 HLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 347 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
+|++|++++|.++. ++..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 45555666665552 3334556666666666666555
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=0.00013 Score=65.68 Aligned_cols=12 Identities=33% Similarity=0.199 Sum_probs=5.8
Q ss_pred CccEEEecCccc
Q 035857 323 QLLNLVLSHNSL 334 (404)
Q Consensus 323 ~L~~L~l~~~~~ 334 (404)
+|++|.+.+|..
T Consensus 157 SLk~L~Is~c~~ 168 (426)
T PRK15386 157 SLKTLSLTGCSN 168 (426)
T ss_pred cccEEEecCCCc
Confidence 445555554443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=9.3e-06 Score=79.11 Aligned_cols=152 Identities=22% Similarity=0.224 Sum_probs=85.1
Q ss_pred CCCcEEEeCCccccccC-C-CcccCCCCCcEEEccCcccc-CCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccE
Q 035857 58 KDLDELRLQGNKLDGLI-P-SSIGNLTNLTSLNLSLNQLS-GRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRV 134 (404)
Q Consensus 58 ~~L~~L~l~~~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 134 (404)
.+|++|+++|....... + ..-..+|.|++|.+++-.+. +.+.....++|+|..||++++.++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 57777777775432111 1 11224677777777765542 12233445677777777777777643 55667777777
Q ss_pred EEccCCcCCC-CCchhhcCCccccEEEecCCCCCCCC------cccccccccceEEEeccccccCcccc-cccCccccCe
Q 035857 135 LFLAYNNLVG-PLPREVGNMKNLKTLLLNRNSLTGPI------PSTLYHLNQLRILYLAYNNLVGPLSK-EVGNLKNLDR 206 (404)
Q Consensus 135 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~ 206 (404)
|.+.+-.+.. .....+..+++|+.|++|........ ...-..+|.|+.|+.+++.+.....+ .+...|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7766655543 22334556777777777765433111 11123367777787777766543322 2234555655
Q ss_pred EEeec
Q 035857 207 LLLNR 211 (404)
Q Consensus 207 L~l~~ 211 (404)
+.+-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 54433
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=1.4e-06 Score=64.53 Aligned_cols=84 Identities=30% Similarity=0.320 Sum_probs=43.1
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEc
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL 353 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 353 (404)
..|..+++++|.+.+..+..-..++.++.+++++|++.+ .|+.+..++.|+.|+++.|.+. ..|+.+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 344444555555442222222234455555666665553 3334555566666666666655 45555555555666666
Q ss_pred cCCccc
Q 035857 354 SHNFIN 359 (404)
Q Consensus 354 ~~~~~~ 359 (404)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555554
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.6e-06 Score=64.29 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=79.5
Q ss_pred CCEEEccCCccCC--CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEc
Q 035857 228 LDELDLSHNRLDG--PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305 (404)
Q Consensus 228 L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 305 (404)
+..++++.|++.. ..+..+.....|+.+++++|.+.+.....-..++.++.+++.+|.+. .+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4556777776652 12334455567888899999888766666666788899999999887 66777888899999999
Q ss_pred CCccccCCCCchhhcCCCccEEEecCcccc
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 335 (404)
+.|.+. ..+..+..+.++..|+..++...
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 999887 45666666888888888888776
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.5e-05 Score=45.90 Aligned_cols=37 Identities=41% Similarity=0.605 Sum_probs=21.9
Q ss_pred CCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 322 SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
++|++|++++|++. .++..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 34444666666666666666665
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00019 Score=64.80 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=86.8
Q ss_pred cCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCcc
Q 035857 222 IGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLT 301 (404)
Q Consensus 222 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 301 (404)
+..+.+++.|++++|.+. .+| .-.++|+.|.+.+|......+..+ +++|++|++++|.....+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 345688999999999776 334 223579999998865433444433 3689999999884332333 4678
Q ss_pred EEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCe
Q 035857 302 SLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNN 381 (404)
Q Consensus 302 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 381 (404)
.|++.++..... ..+. ++|+.|.+.+++........-.-.++|+.|.+.+|... ..|..+- .+|+.|+++.+.
T Consensus 116 ~L~L~~n~~~~L--~~LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 116 SLEIKGSATDSI--KNVP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eEEeCCCCCccc--ccCc--chHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 888876544321 1111 46778887554321111000012368999999999865 3443333 589999988763
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.66 E-value=0.0001 Score=58.67 Aligned_cols=127 Identities=25% Similarity=0.204 Sum_probs=89.3
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
=+.+++.+.++..... .-.-......++++++.+. ..+.|..+++|..|.++.|++..+.+..-.-+++|++|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 3556666666552211 1112356778999999875 345788999999999999999877666656678999999999
Q ss_pred ccccCC-CccccCCCCCCcEEEccCcccCCCCh---hhhhCCCCccEEEccCCc
Q 035857 92 NQLSGR-LPQEVGNLKNLDSLFLDNNNLTGPIP---STLYHLNQLRVLFLAYNN 141 (404)
Q Consensus 92 ~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~ 141 (404)
|.+... .-+.+..||+|++|.+-+|.+++.-. ..+..+|+|+.||+....
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 887521 12457789999999999887764322 133467999999987643
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=3.1e-06 Score=80.74 Aligned_cols=172 Identities=23% Similarity=0.145 Sum_probs=76.9
Q ss_pred ccccCeEEeeccc-cCcc-cCcccCCCCCCCEEEccCC-ccCCCC----hhhhccCCCcCEEEcCCCc-cccccCccccC
Q 035857 201 LKNLDRLLLNRNN-LTGS-IPSTIGYLNLLDELDLSHN-RLDGPI----PPTIGNLTNLTSLDLSSNQ-LSGLLPREVRN 272 (404)
Q Consensus 201 ~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~ 272 (404)
++.|+.+.+.++. +++. .......++.|++|+++++ ...... ......+++|+.++++.+. +++.....++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555553 2211 2233345556666666552 111010 1122344566666666555 44433333332
Q ss_pred -CCcCcEEEccCCc-cCCC-CCCcccCCCCccEEEcCCcccc-CC-CCchhhcCCCccEEEecCcc--------------
Q 035857 273 -LKYLASLSLNGNN-LIGP-IPPTIGYLTNLTSLNLGYNQLN-SS-IPPELMNCSQLLNLVLSHNS-------------- 333 (404)
Q Consensus 273 -~~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l~~~~-------------- 333 (404)
+++|+.|.+.+|. +++. +......++.|++|++++|... +. .......|++|+.+.+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 5566666655555 2322 2222334556666666665332 11 11112234444443333322
Q ss_pred c---cccCchhhhccccceEEEccCCcccccC-CccccCCCcc
Q 035857 334 L---SGSIPSEIGNLIHLRQLDLSHNFINGTI-PSQLGKITNV 372 (404)
Q Consensus 334 ~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L 372 (404)
. ..........|+.++.+.+..|...... ...+.+|+.|
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 1 1122223456777777777777643332 2444555555
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=1.4e-05 Score=66.72 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=57.2
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCc-hhhhccccceEEE
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIP-SEIGNLIHLRQLD 352 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 352 (404)
.+.+.|++.||.+.+. .....|+.|+.|.++-|.++.. ..+..|++|++|.++.|.+.+..- ..+.++++|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555422 2344566666666666666543 345667777777777776653311 2346677777777
Q ss_pred ccCCcccccCCcc-----ccCCCcceEEE
Q 035857 353 LSHNFINGTIPSQ-----LGKITNVSEVD 376 (404)
Q Consensus 353 l~~~~~~~~~~~~-----~~~~~~L~~l~ 376 (404)
|.+|+=.+..+.. +..+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776655444322 34467777665
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00029 Score=58.60 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=7.2
Q ss_pred cCCCCCCcEEEeCCc
Q 035857 54 FGNLKDLDELRLQGN 68 (404)
Q Consensus 54 ~~~~~~L~~L~l~~~ 68 (404)
+..+++|++|.++.|
T Consensus 61 ~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDN 75 (260)
T ss_pred CCCcchhhhhcccCC
Confidence 334445555555544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.0007 Score=56.37 Aligned_cols=88 Identities=28% Similarity=0.376 Sum_probs=58.3
Q ss_pred ccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCc--cccCCCCcccCCCCCCcEEEeCCcccccc-CCCcccCCC
Q 035857 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNN--ILNGSIPLEFGNLKDLDELRLQGNKLDGL-IPSSIGNLT 82 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~ 82 (404)
...+..|+.+.+.+..++.. ..|-.+|+|+.|+++.| .+...++.....+|+|+++++++|++... ....++.+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33445566666666666522 22557789999999999 55544444556779999999999988631 122334566
Q ss_pred CCcEEEccCcccc
Q 035857 83 NLTSLNLSLNQLS 95 (404)
Q Consensus 83 ~L~~L~l~~~~~~ 95 (404)
+|..|++..|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 7777777777654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.00011 Score=61.43 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=75.9
Q ss_pred CCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCC-ccccCCCcceEE
Q 035857 297 LTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP-SQLGKITNVSEV 375 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l 375 (404)
+.+.++|+..+|.++++ .....++.|++|.++-|.++.. ..+..|.+|++|+|..|.|....- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45788999999999864 3446889999999999999855 567889999999999998863311 335789999999
Q ss_pred EccCCeeeeecCC--------cccccCcce
Q 035857 376 DVSKNNLSGVIPK--------SVLRVPGLK 397 (404)
Q Consensus 376 ~l~~~~~~~~~~~--------~~~~~~~l~ 397 (404)
.|..||=.+..+. .+.|++.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999998766653 255655554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.48 E-value=0.0021 Score=31.72 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=14.5
Q ss_pred cceEEEccCCeeeeecCCccccc
Q 035857 371 NVSEVDVSKNNLSGVIPKSVLRV 393 (404)
Q Consensus 371 ~L~~l~l~~~~~~~~~~~~~~~~ 393 (404)
+|++|++++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677778877777 566556554
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00077 Score=53.88 Aligned_cols=82 Identities=16% Similarity=0.098 Sum_probs=38.1
Q ss_pred ccEEEcCCccccCCCCchhhcCCCccEEEecCcccc-ccCchhhh-ccccceEEEccCC-cccccCCccccCCCcceEEE
Q 035857 300 LTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLS-GSIPSEIG-NLIHLRQLDLSHN-FINGTIPSQLGKITNVSEVD 376 (404)
Q Consensus 300 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~ 376 (404)
++.++-+++.+...+.+-+..+++++.|.+.+|.-. +...+.+. -.++|+.|++++| .|+.....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 344444444444444444445555555555555322 11111221 2345555555555 44444445555555555555
Q ss_pred ccCCe
Q 035857 377 VSKNN 381 (404)
Q Consensus 377 l~~~~ 381 (404)
+++=+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 55433
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.0023 Score=51.19 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=43.7
Q ss_pred cCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCC-CCcc-cCCCCccEEEcCCc-cccCCCCchhhcCCCccEEE
Q 035857 252 LTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPI-PPTI-GYLTNLTSLNLGYN-QLNSSIPPELMNCSQLLNLV 328 (404)
Q Consensus 252 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 328 (404)
++.++-+++.+..+....+..+++++.|.+.+|.-.+.. ...+ .-.++|+.|++++| .|++.+...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 445555555555444444555555555555555432210 0001 12366667777766 45555555666666666666
Q ss_pred ecCccc
Q 035857 329 LSHNSL 334 (404)
Q Consensus 329 l~~~~~ 334 (404)
+.+-..
T Consensus 183 l~~l~~ 188 (221)
T KOG3864|consen 183 LYDLPY 188 (221)
T ss_pred hcCchh
Confidence 666543
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.017 Score=28.43 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=9.4
Q ss_pred ceEEEccCCcccccCCcccc
Q 035857 348 LRQLDLSHNFINGTIPSQLG 367 (404)
Q Consensus 348 L~~L~l~~~~~~~~~~~~~~ 367 (404)
|+.|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3333344
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.22 E-value=0.054 Score=24.65 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=5.6
Q ss_pred cceEEEccCCeee
Q 035857 371 NVSEVDVSKNNLS 383 (404)
Q Consensus 371 ~L~~l~l~~~~~~ 383 (404)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.00 E-value=0.022 Score=28.63 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=8.4
Q ss_pred CcceEEEccCCeeeeec
Q 035857 370 TNVSEVDVSKNNLSGVI 386 (404)
Q Consensus 370 ~~L~~l~l~~~~~~~~~ 386 (404)
++|++|++++|+++...
T Consensus 2 ~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEG 18 (24)
T ss_dssp TT-SEEE-TSSBEHHHH
T ss_pred CCCCEEEccCCcCCHHH
Confidence 45666666666655443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.14 E-value=0.00096 Score=62.44 Aligned_cols=83 Identities=33% Similarity=0.304 Sum_probs=38.8
Q ss_pred ceEEEeccccccCc----ccccccCccccCeEEeeccccCccc----CcccCCC-CCCCEEEccCCccCCCC----hhhh
Q 035857 180 LRILYLAYNNLVGP----LSKEVGNLKNLDRLLLNRNNLTGSI----PSTIGYL-NLLDELDLSHNRLDGPI----PPTI 246 (404)
Q Consensus 180 L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~~~~~~----~~~l 246 (404)
+..+.+.+|.+... ....+...+.|+.|++.+|.+.+.. ...+... ..++.|++..|.+.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55556666555432 2233445566666666666654211 1111221 33455555555554322 2223
Q ss_pred ccCCCcCEEEcCCCcc
Q 035857 247 GNLTNLTSLDLSSNQL 262 (404)
Q Consensus 247 ~~~~~L~~L~l~~~~~ 262 (404)
.....++.+++..|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3345555555555544
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.77 E-value=0.0014 Score=61.30 Aligned_cols=185 Identities=27% Similarity=0.235 Sum_probs=121.3
Q ss_pred cccCeEEeeccccCcc----cCcccCCCCCCCEEEccCCccCCCChhhh----ccC-CCcCEEEcCCCccccccC----c
Q 035857 202 KNLDRLLLNRNNLTGS----IPSTIGYLNLLDELDLSHNRLDGPIPPTI----GNL-TNLTSLDLSSNQLSGLLP----R 268 (404)
Q Consensus 202 ~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~~~~~~~----~ 268 (404)
..+..+.+.+|.+.+. +...+...+.|+.|++++|.+.......+ ... ..++.|++..|.++.... .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477778888877532 33455677889999999998864333222 332 456777887777765432 2
Q ss_pred cccCCCcCcEEEccCCccCCC----CCCccc----CCCCccEEEcCCccccCCCCc----hhhcCCC-ccEEEecCcccc
Q 035857 269 EVRNLKYLASLSLNGNNLIGP----IPPTIG----YLTNLTSLNLGYNQLNSSIPP----ELMNCSQ-LLNLVLSHNSLS 335 (404)
Q Consensus 269 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~~~----~~~~~~~-L~~L~l~~~~~~ 335 (404)
.+...+.++.++++.|.+... .+..+. ...++++|++.+|.++..... .+...+. +.++++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 334467888888888876421 222233 357888999999988753332 2334445 677999999887
Q ss_pred ccCch----hhhcc-ccceEEEccCCcccccCC----ccccCCCcceEEEccCCeeeeec
Q 035857 336 GSIPS----EIGNL-IHLRQLDLSHNFINGTIP----SQLGKITNVSEVDVSKNNLSGVI 386 (404)
Q Consensus 336 ~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~ 386 (404)
+.... .+..+ +.++.+++..|+++.... ..+.+++.++++.+++|++....
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 55332 23334 677899999998876544 34456788999999999887544
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.68 E-value=0.31 Score=24.87 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=11.6
Q ss_pred CcceEEEccCCeeeeecCCcc
Q 035857 370 TNVSEVDVSKNNLSGVIPKSV 390 (404)
Q Consensus 370 ~~L~~l~l~~~~~~~~~~~~~ 390 (404)
++|+.|++++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666663333333
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.68 E-value=0.31 Score=24.87 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=11.6
Q ss_pred CcceEEEccCCeeeeecCCcc
Q 035857 370 TNVSEVDVSKNNLSGVIPKSV 390 (404)
Q Consensus 370 ~~L~~l~l~~~~~~~~~~~~~ 390 (404)
++|+.|++++|+++...+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666663333333
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.64 E-value=0.023 Score=46.71 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=72.6
Q ss_pred ccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcce
Q 035857 294 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVS 373 (404)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 373 (404)
+..+...+.||++.+.... ....|..++.|..++++.+.+. ..|+.+.....++.+.+..|..+ ..|..++..++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 3455677778888776653 3345666778888888888876 67777877777777777777666 5677888888999
Q ss_pred EEEccCCeeeeecCCcccccCc
Q 035857 374 EVDVSKNNLSGVIPKSVLRVPG 395 (404)
Q Consensus 374 ~l~l~~~~~~~~~~~~~~~~~~ 395 (404)
.++..++++....-...+.|..
T Consensus 115 ~~e~k~~~~~~~~~~~v~~c~~ 136 (326)
T KOG0473|consen 115 KNEQKKTEFFRKLFGFVWSCVF 136 (326)
T ss_pred hhhhccCcchHHHHhHhhhhhh
Confidence 9998888887665555666654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.25 E-value=0.065 Score=44.21 Aligned_cols=85 Identities=21% Similarity=0.220 Sum_probs=42.2
Q ss_pred cCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCcc
Q 035857 54 FGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLR 133 (404)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 133 (404)
++.+.+.+.|+++.++.. .....|.-++.+..|+++.+.+. ..|..++....+.+++...|... ..|..+...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455555555555543 22233444455555555555554 44444555555555555544443 2334445555555
Q ss_pred EEEccCCc
Q 035857 134 VLFLAYNN 141 (404)
Q Consensus 134 ~L~l~~~~ 141 (404)
+++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55555544
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.40 E-value=3 Score=21.36 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=12.5
Q ss_pred CcceEEEccCCeeeeecCC
Q 035857 370 TNVSEVDVSKNNLSGVIPK 388 (404)
Q Consensus 370 ~~L~~l~l~~~~~~~~~~~ 388 (404)
++|+.|++++|+++ ..|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46778888888877 4554
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.30 E-value=2.9 Score=21.23 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=11.7
Q ss_pred CCcceEEEccCCe-ee
Q 035857 369 ITNVSEVDVSKNN-LS 383 (404)
Q Consensus 369 ~~~L~~l~l~~~~-~~ 383 (404)
|++|++|++++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788889999886 44
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.30 E-value=5.4 Score=20.45 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=11.5
Q ss_pred CCcceEEEccCCeee
Q 035857 369 ITNVSEVDVSKNNLS 383 (404)
Q Consensus 369 ~~~L~~l~l~~~~~~ 383 (404)
+.+|++|++++|.|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 357888888888886
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.92 E-value=2.7 Score=21.92 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=7.2
Q ss_pred CccEEEcCCccccC
Q 035857 299 NLTSLNLGYNQLNS 312 (404)
Q Consensus 299 ~L~~L~l~~~~~~~ 312 (404)
+|++|+|++|.+.+
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.17 E-value=9.3 Score=36.23 Aligned_cols=67 Identities=27% Similarity=0.178 Sum_probs=43.8
Q ss_pred ccCCCCccEEEcCCccccCCC--CchhhcCCCccEEEecCccccccCchhhh--ccccceEEEccCCcccc
Q 035857 294 IGYLTNLTSLNLGYNQLNSSI--PPELMNCSQLLNLVLSHNSLSGSIPSEIG--NLIHLRQLDLSHNFING 360 (404)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 360 (404)
-...+.+..+++++|.+.... ...-...|+|+.|+|++|...-....++. +...|++|.+.||++..
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 345688888999998775431 12234678999999999932211222332 34678899999998864
No 88
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=43.95 E-value=29 Score=28.69 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCCCccEEEcCCccccCCCCchh-hcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccc-cCCCcce
Q 035857 296 YLTNLTSLNLGYNQLNSSIPPEL-MNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL-GKITNVS 373 (404)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 373 (404)
.|.+++.-|+++..+.-...... .-|.+++--.+.+|++.+ |..+. .+|+-.++-++.+.+..-... -..+.|+
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfed--ps~~k--aNLeganLkG~~~egs~m~ginLrvA~Lk 244 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFED--PSGLK--ANLEGANLKGADMEGSQMTGINLRVATLK 244 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcCCCC--ccchh--ccccccccccccccccccccceeEecccc
Confidence 34566666666654433222221 235678888888888863 33333 467777777776654322111 1234556
Q ss_pred EEEccCCeeeee
Q 035857 374 EVDVSKNNLSGV 385 (404)
Q Consensus 374 ~l~l~~~~~~~~ 385 (404)
.-++.+|++.+.
T Consensus 245 nanle~~NLrgA 256 (302)
T KOG1665|consen 245 NANLENCNLRGA 256 (302)
T ss_pred ccccccCccccc
Confidence 666666666543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.56 E-value=16 Score=34.84 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=51.0
Q ss_pred cCCCcCcEEEccCCccCCC--CCCcccCCCCccEEEcCCc--cccCCCCchhhcCCCccEEEecCccccccCch------
Q 035857 271 RNLKYLASLSLNGNNLIGP--IPPTIGYLTNLTSLNLGYN--QLNSSIPPELMNCSQLLNLVLSHNSLSGSIPS------ 340 (404)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------ 340 (404)
.+.+.+..+.+++|.+... +...-...|+|+.|+|++| .+.......=.+...|++|-+.||++-+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 4468889999999987532 2222234699999999999 44322111112445889999999987643221
Q ss_pred hh-hccccceEEE
Q 035857 341 EI-GNLIHLRQLD 352 (404)
Q Consensus 341 ~~-~~~~~L~~L~ 352 (404)
.+ ..+|+|..|+
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 11 2467776654
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.38 E-value=1.9e+02 Score=27.44 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=33.7
Q ss_pred CcCEEEcCCCccccc---cCccccCCCcCcEEEccCCccCCCC----CCcccCCCCccEEEcCCcccc
Q 035857 251 NLTSLDLSSNQLSGL---LPREVRNLKYLASLSLNGNNLIGPI----PPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 251 ~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 311 (404)
-+..+.++.+..... ..+....-+.+..++++++...+.. +.......+++.+-.+.+...
T Consensus 414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 355555555554322 2233444578888999988765432 223333456666666666544
No 91
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.08 E-value=2e+02 Score=16.68 Aligned_cols=8 Identities=38% Similarity=0.343 Sum_probs=3.5
Q ss_pred CcCcEEEc
Q 035857 274 KYLASLSL 281 (404)
Q Consensus 274 ~~L~~L~l 281 (404)
+++++|.+
T Consensus 12 ~~l~~L~~ 19 (44)
T PF05725_consen 12 SSLKSLIF 19 (44)
T ss_pred CCCeEEEE
Confidence 34444444
Done!