Query 035857
Match_columns 404
No_of_seqs 180 out of 2681
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 11:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-47 3.5E-52 382.0 29.5 396 6-403 219-716 (768)
2 3rgz_A Protein brassinosteroid 100.0 7E-47 2.4E-51 376.1 30.6 396 6-404 196-693 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.8E-45 6E-50 358.1 35.9 400 3-403 50-535 (606)
4 3t6q_A CD180 antigen; protein- 100.0 3.2E-45 1.1E-49 356.2 32.3 399 3-403 74-559 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9.8E-44 3.4E-48 345.8 31.7 379 5-392 51-519 (606)
6 2z63_A TOLL-like receptor 4, v 100.0 1.7E-43 5.9E-48 341.8 31.0 389 11-404 29-531 (570)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-42 5E-47 341.9 34.6 380 5-384 44-518 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8.2E-43 2.8E-47 339.3 32.2 394 2-404 26-510 (606)
9 4eco_A Uncharacterized protein 100.0 4E-43 1.4E-47 341.5 28.3 385 10-403 81-599 (636)
10 2z63_A TOLL-like receptor 4, v 100.0 1.3E-42 4.3E-47 335.7 30.9 387 12-404 9-507 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-42 1.7E-46 338.2 34.1 401 1-403 18-516 (680)
12 4eco_A Uncharacterized protein 100.0 1.7E-42 5.7E-47 337.2 26.0 352 26-386 198-603 (636)
13 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-42 1.3E-46 345.4 28.0 277 10-286 24-374 (844)
14 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-41 3.9E-46 341.9 29.1 295 13-311 7-375 (844)
15 4ecn_A Leucine-rich repeat pro 100.0 4.3E-41 1.5E-45 332.7 29.1 345 50-403 440-839 (876)
16 4ecn_A Leucine-rich repeat pro 100.0 4.7E-41 1.6E-45 332.5 28.0 356 26-391 440-848 (876)
17 2z81_A CD282 antigen, TOLL-lik 100.0 3.7E-41 1.3E-45 323.9 25.0 389 2-403 20-509 (549)
18 3v47_A TOLL-like receptor 5B a 100.0 1.1E-39 3.7E-44 306.4 28.9 370 14-387 14-412 (455)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-40 5.3E-45 317.3 21.5 388 1-404 14-481 (520)
20 3v47_A TOLL-like receptor 5B a 100.0 1E-38 3.5E-43 299.8 28.0 354 10-363 30-412 (455)
21 2z81_A CD282 antigen, TOLL-lik 100.0 3.5E-39 1.2E-43 310.2 25.3 375 3-387 43-514 (549)
22 1o6v_A Internalin A; bacterial 100.0 2.9E-37 1E-41 290.2 32.0 346 8-384 44-389 (466)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-37 1.5E-41 295.8 29.5 369 2-383 46-510 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 5.2E-37 1.8E-41 300.2 30.2 399 2-404 46-580 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-36 3.6E-41 293.2 31.2 382 9-404 30-510 (562)
26 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-38 1.8E-42 299.9 21.2 376 13-404 3-457 (520)
27 1o6v_A Internalin A; bacterial 100.0 2.3E-35 7.9E-40 277.3 32.6 361 5-395 63-434 (466)
28 2id5_A Lingo-1, leucine rich r 100.0 1.2E-35 4.2E-40 280.3 28.3 321 13-336 14-334 (477)
29 2id5_A Lingo-1, leucine rich r 100.0 1.6E-35 5.4E-40 279.6 24.5 308 2-311 26-333 (477)
30 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-35 2.3E-39 285.3 29.5 378 4-383 70-580 (635)
31 4fmz_A Internalin; leucine ric 100.0 1.2E-33 4.2E-38 255.7 28.8 305 56-383 42-346 (347)
32 4fmz_A Internalin; leucine ric 100.0 4.3E-33 1.5E-37 252.0 27.9 306 31-359 41-346 (347)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1E-33 3.5E-38 264.0 23.8 343 4-390 36-394 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 1.6E-33 5.4E-38 258.9 24.4 308 34-383 45-352 (390)
35 3o6n_A APL1; leucine-rich repe 100.0 2.7E-33 9.3E-38 257.3 22.8 308 57-403 44-351 (390)
36 1jl5_A Outer protein YOPM; leu 100.0 8.2E-33 2.8E-37 257.8 24.3 341 1-384 25-410 (454)
37 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-32 4.9E-37 256.3 23.7 338 23-403 31-386 (457)
38 3oja_B Anopheles plasmodium-re 100.0 2E-32 6.7E-37 264.9 24.0 307 34-358 51-357 (597)
39 1jl5_A Outer protein YOPM; leu 100.0 5.9E-32 2E-36 251.9 24.4 353 8-403 9-408 (454)
40 3oja_B Anopheles plasmodium-re 100.0 2.9E-32 9.8E-37 263.7 22.4 312 56-385 49-360 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-35 5.4E-40 278.6 -5.3 380 9-388 2-445 (461)
42 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-35 1E-39 276.8 -4.8 371 33-403 2-439 (461)
43 1xku_A Decorin; proteoglycan, 100.0 2.4E-30 8.1E-35 232.3 26.9 294 35-380 32-329 (330)
44 1xku_A Decorin; proteoglycan, 100.0 2E-30 6.9E-35 232.7 25.6 286 83-402 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-30 8.4E-35 232.3 22.2 288 35-333 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 9.5E-30 3.2E-34 228.5 23.6 294 58-380 33-330 (332)
47 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-29 5.9E-34 224.5 19.9 232 155-388 51-286 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-29 4.9E-34 225.0 15.9 250 131-383 51-304 (313)
49 3ogk_B Coronatine-insensitive 100.0 6E-32 2E-36 262.2 -0.5 364 32-397 110-541 (592)
50 3ogk_B Coronatine-insensitive 100.0 1.1E-31 3.8E-36 260.3 -1.0 378 26-404 65-526 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 2.9E-27 1E-31 214.1 18.9 276 33-312 30-315 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 1.9E-27 6.4E-32 215.4 17.2 282 56-385 29-316 (353)
53 2z66_A Variable lymphocyte rec 100.0 5.5E-27 1.9E-31 208.1 19.2 246 110-383 11-261 (306)
54 2p1m_B Transport inhibitor res 99.9 5.7E-30 1.9E-34 248.4 -0.7 389 6-397 62-534 (594)
55 2z66_A Variable lymphocyte rec 99.9 5.8E-27 2E-31 207.9 17.7 247 61-335 10-261 (306)
56 3zyj_A Leucine-rich repeat-con 99.9 2.8E-26 9.7E-31 213.8 22.5 227 155-383 65-292 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 214.1 22.5 228 154-383 75-303 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-27 3.1E-31 204.4 16.9 137 199-335 102-238 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 3.2E-26 1.1E-30 201.0 18.0 255 133-391 14-269 (285)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.4E-30 210.1 22.8 245 13-262 57-302 (452)
61 4fcg_A Uncharacterized protein 99.9 7.1E-26 2.4E-30 202.3 19.5 235 129-383 80-314 (328)
62 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 5.8E-30 208.6 22.6 245 37-286 46-291 (440)
63 4fcg_A Uncharacterized protein 99.9 4.4E-25 1.5E-29 197.2 21.7 235 104-358 79-313 (328)
64 2p1m_B Transport inhibitor res 99.9 8.8E-29 3E-33 240.1 -5.7 374 6-381 101-542 (594)
65 3o53_A Protein LRIM1, AGAP0063 99.9 8.2E-27 2.8E-31 207.7 5.8 254 87-378 15-270 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 6.8E-31 205.2 6.8 259 10-282 10-270 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1E-23 3.5E-28 202.3 24.9 266 58-367 40-305 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-23 3.4E-27 195.5 27.1 267 35-345 41-307 (622)
69 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4E-30 199.8 5.1 202 177-384 94-310 (312)
70 1wwl_A Monocyte differentiatio 99.9 4.8E-25 1.6E-29 195.9 7.6 253 79-360 40-310 (312)
71 2z62_A TOLL-like receptor 4, v 99.9 3.9E-23 1.3E-27 180.4 18.8 206 179-385 29-239 (276)
72 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5E-27 176.0 21.0 202 155-359 17-218 (270)
73 2z62_A TOLL-like receptor 4, v 99.9 5.2E-23 1.8E-27 179.6 18.2 222 14-239 11-237 (276)
74 3oja_A Leucine-rich immune mol 99.9 1.6E-24 5.4E-29 203.8 9.0 236 129-378 33-270 (487)
75 3oja_A Leucine-rich immune mol 99.9 1.9E-24 6.3E-29 203.4 9.3 238 31-282 31-270 (487)
76 2o6q_A Variable lymphocyte rec 99.9 1.5E-22 5.2E-27 175.9 20.1 202 179-383 17-218 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.2E-23 4.2E-28 182.9 12.1 210 175-395 38-247 (272)
78 3rfs_A Internalin B, repeat mo 99.9 2.6E-22 9E-27 174.5 15.2 209 152-371 39-247 (272)
79 2xwt_C Thyrotropin receptor; s 99.9 2.2E-22 7.6E-27 171.7 14.4 197 202-401 31-236 (239)
80 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.7E-28 189.5 5.4 234 154-392 70-315 (336)
81 1p9a_G Platelet glycoprotein I 99.9 1.5E-21 5E-26 171.1 18.5 204 173-383 5-208 (290)
82 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.8E-28 188.7 5.5 245 155-404 48-306 (336)
83 3goz_A Leucine-rich repeat-con 99.9 2.4E-23 8.2E-28 188.9 5.8 254 110-363 2-301 (362)
84 1p9a_G Platelet glycoprotein I 99.9 3.2E-21 1.1E-25 168.9 18.2 204 149-359 5-208 (290)
85 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4E-27 184.4 8.7 258 86-343 2-305 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 1E-21 3.6E-26 167.5 13.1 197 34-236 31-236 (239)
87 2ca6_A RAN GTPase-activating p 99.9 9.5E-24 3.3E-28 193.4 -1.1 237 126-362 28-319 (386)
88 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5.1E-25 161.5 18.6 178 203-383 15-192 (251)
89 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.4E-25 167.4 17.2 195 150-360 37-231 (308)
90 2ca6_A RAN GTPase-activating p 99.8 1.7E-22 5.9E-27 185.1 3.6 93 222-314 212-319 (386)
91 4glp_A Monocyte differentiatio 99.8 2.1E-21 7.2E-26 172.2 10.4 224 154-383 64-307 (310)
92 3m19_A Variable lymphocyte rec 99.8 3.5E-20 1.2E-24 159.1 16.9 176 226-404 14-192 (251)
93 1h6u_A Internalin H; cell adhe 99.8 5E-20 1.7E-24 162.9 17.5 192 32-239 39-230 (308)
94 4glp_A Monocyte differentiatio 99.8 4.3E-21 1.5E-25 170.2 10.3 201 154-359 91-307 (310)
95 4fs7_A Uncharacterized protein 99.8 4.5E-19 1.5E-23 162.6 21.8 336 21-375 58-393 (394)
96 4fs7_A Uncharacterized protein 99.8 1.7E-19 6E-24 165.3 18.9 334 45-397 58-391 (394)
97 2o6s_A Variable lymphocyte rec 99.8 2.7E-19 9.3E-24 149.0 13.4 164 225-395 27-190 (208)
98 2o6s_A Variable lymphocyte rec 99.8 6.5E-19 2.2E-23 146.7 13.5 163 202-371 28-190 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.7E-18 9.3E-23 154.8 17.9 239 13-259 12-255 (350)
100 4ay9_X Follicle-stimulating ho 99.8 5.7E-18 1.9E-22 152.7 17.4 238 109-355 12-255 (350)
101 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.2E-23 150.8 14.5 173 174-360 42-214 (291)
102 3sb4_A Hypothetical leucine ri 99.8 3.3E-19 1.1E-23 159.4 8.8 218 177-397 100-324 (329)
103 4fdw_A Leucine rich hypothetic 99.8 2.4E-17 8.2E-22 150.4 20.2 268 31-311 110-383 (401)
104 3sb4_A Hypothetical leucine ri 99.8 3.9E-19 1.3E-23 158.9 8.1 103 248-352 224-327 (329)
105 2v9t_B SLIT homolog 2 protein 99.8 8.6E-18 3E-22 140.9 14.7 133 226-358 32-164 (220)
106 1h6t_A Internalin B; cell adhe 99.8 7.6E-18 2.6E-22 147.6 14.0 172 31-216 43-214 (291)
107 4ezg_A Putative uncharacterize 99.8 7.4E-18 2.5E-22 139.0 12.7 153 223-383 41-194 (197)
108 4fdw_A Leucine rich hypothetic 99.7 1.2E-16 4.2E-21 145.8 21.1 269 54-335 109-383 (401)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 2.1E-17 7E-22 138.6 14.7 152 205-359 14-166 (220)
110 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.3E-22 158.4 16.2 200 155-370 22-221 (605)
111 3e6j_A Variable lymphocyte rec 99.7 5.2E-17 1.8E-21 137.1 15.6 152 204-359 21-172 (229)
112 4gt6_A Cell surface protein; l 99.7 5.3E-16 1.8E-20 142.1 22.9 317 51-381 56-389 (394)
113 2xot_A Amphoterin-induced prot 99.7 1.5E-17 5.1E-22 150.6 12.4 157 203-359 40-202 (361)
114 2v9t_B SLIT homolog 2 protein 99.7 6.5E-17 2.2E-21 135.5 15.3 151 13-166 14-164 (220)
115 3cvr_A Invasion plasmid antige 99.7 5.3E-17 1.8E-21 154.0 15.5 187 155-369 60-253 (571)
116 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6E-22 159.0 12.0 190 132-337 23-212 (605)
117 4ezg_A Putative uncharacterize 99.7 4.2E-17 1.4E-21 134.4 12.5 153 31-191 41-194 (197)
118 4gt6_A Cell surface protein; l 99.7 1.4E-15 5E-20 139.2 23.8 323 22-358 51-390 (394)
119 2xot_A Amphoterin-induced prot 99.7 4.3E-17 1.5E-21 147.5 13.5 176 13-191 21-202 (361)
120 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.7E-22 141.7 10.8 168 178-360 19-186 (263)
121 3e6j_A Variable lymphocyte rec 99.7 2.3E-16 7.7E-21 133.2 14.9 152 12-167 21-172 (229)
122 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-16 7.6E-21 132.3 14.6 151 13-166 14-165 (220)
123 3cvr_A Invasion plasmid antige 99.7 2.9E-16 9.8E-21 149.0 15.7 189 131-347 60-255 (571)
124 1xeu_A Internalin C; cellular 99.7 3.7E-17 1.3E-21 141.0 8.1 171 152-337 17-187 (263)
125 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 122.0 11.3 132 250-383 24-160 (168)
126 4h09_A Hypothetical leucine ri 99.6 7.4E-14 2.5E-18 127.3 23.0 314 30-369 42-355 (379)
127 2ell_A Acidic leucine-rich nuc 99.6 2.4E-15 8.1E-20 120.5 10.6 132 34-167 24-160 (168)
128 4h09_A Hypothetical leucine ri 99.6 1.4E-13 4.8E-18 125.4 23.1 319 53-397 41-359 (379)
129 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.5E-20 117.9 8.8 126 34-161 17-147 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 3.1E-15 1.1E-19 117.3 9.2 127 250-378 17-148 (149)
131 1w8a_A SLIT protein; signaling 99.6 1E-14 3.5E-19 119.4 12.1 129 229-360 11-140 (192)
132 1dce_A Protein (RAB geranylger 99.6 2.3E-17 7.9E-22 157.2 -4.7 184 199-388 346-551 (567)
133 2wfh_A SLIT homolog 2 protein 99.6 3.2E-14 1.1E-18 116.4 13.3 126 229-358 13-138 (193)
134 1w8a_A SLIT protein; signaling 99.6 3.1E-14 1E-18 116.6 12.3 132 253-387 11-143 (192)
135 2o6r_A Variable lymphocyte rec 99.6 3.8E-14 1.3E-18 114.5 12.6 111 274-384 28-138 (177)
136 1dce_A Protein (RAB geranylger 99.5 2.2E-16 7.7E-21 150.4 -2.3 122 227-353 442-567 (567)
137 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 114.2 9.7 132 6-141 15-151 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1E-18 114.9 8.7 105 275-383 43-153 (176)
139 2wfh_A SLIT homolog 2 protein 99.5 1.8E-13 6.3E-18 111.9 13.1 125 13-141 13-137 (193)
140 4b8c_D Glucose-repressible alc 99.5 1.5E-14 5.3E-19 142.1 6.4 118 221-342 219-336 (727)
141 2o6r_A Variable lymphocyte rec 99.5 5.7E-13 1.9E-17 107.5 14.2 127 13-142 10-136 (177)
142 4b8c_D Glucose-repressible alc 99.5 8.1E-15 2.8E-19 144.0 2.8 145 241-389 215-360 (727)
143 1ds9_A Outer arm dynein; leuci 99.4 3.3E-15 1.1E-19 123.1 -3.6 135 242-383 40-185 (198)
144 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.3E-20 124.2 -5.9 132 221-359 43-185 (198)
145 3g39_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 101.5 10.9 104 253-359 12-115 (170)
146 2r9u_A Variable lymphocyte rec 99.3 9.5E-12 3.2E-16 99.8 10.9 104 253-359 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 4.6E-14 1.6E-18 127.5 -4.6 183 201-383 71-283 (372)
148 3g39_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 96.9 11.6 105 12-119 11-115 (170)
149 3un9_A NLR family member X1; l 99.3 6.1E-14 2.1E-18 126.7 -4.7 183 177-359 71-283 (372)
150 2r9u_A Variable lymphocyte rec 99.3 4.5E-11 1.5E-15 95.8 11.6 104 13-119 15-118 (174)
151 2ra8_A Uncharacterized protein 99.1 6.2E-11 2.1E-15 106.1 4.6 179 198-381 135-341 (362)
152 2ifg_A High affinity nerve gro 99.0 9E-10 3.1E-14 98.9 9.5 102 255-359 13-116 (347)
153 2ra8_A Uncharacterized protein 99.0 1.2E-10 4E-15 104.3 3.1 180 174-357 135-341 (362)
154 2ifg_A High affinity nerve gro 99.0 1.5E-09 5.2E-14 97.4 9.2 104 13-119 11-116 (347)
155 3e4g_A ATP synthase subunit S, 98.8 2E-09 6.8E-14 84.8 2.8 86 298-383 61-153 (176)
156 3e4g_A ATP synthase subunit S, 98.5 1.8E-08 6.1E-13 79.3 1.9 83 275-357 62-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 9.5E-09 3.3E-13 83.0 0.1 68 244-311 30-106 (185)
158 1io0_A Tropomodulin; LRR prote 98.5 4.1E-08 1.4E-12 79.2 1.7 115 221-335 31-164 (185)
159 3rw6_A Nuclear RNA export fact 98.1 5E-07 1.7E-11 76.6 -0.1 82 55-137 167-258 (267)
160 3rw6_A Nuclear RNA export fact 97.9 9.3E-06 3.2E-10 68.9 5.6 13 347-359 221-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00019 6.5E-09 57.5 2.2 18 246-263 66-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00013 4.3E-09 58.5 1.1 88 245-332 36-136 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.0058 2E-07 45.5 4.9 55 302-358 12-67 (130)
164 3rfe_A Platelet glycoprotein I 95.7 0.028 9.7E-07 41.7 6.8 38 298-335 31-68 (130)
165 2lz0_A Uncharacterized protein 91.7 0.45 1.5E-05 33.2 6.0 48 20-68 6-53 (100)
166 2lz0_A Uncharacterized protein 87.6 1.8 6E-05 30.1 6.3 46 45-91 7-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-47 Score=382.01 Aligned_cols=396 Identities=38% Similarity=0.581 Sum_probs=242.7
Q ss_pred ccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccC-CCCC
Q 035857 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGN-LTNL 84 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L 84 (404)
++++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. .+++|++|++++|.+....+..+.. +++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 778888888888888888777777888888888888887776444432 5556666666666555444444433 2555
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChh-hhhCCCCccEEEccCCcCCCCCchhhcC-----------
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPS-TLYHLNQLRVLFLAYNNLVGPLPREVGN----------- 152 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 152 (404)
++|++++|.+....|..++.+++|+.|++++|.+.+..+. .+..+++|++|++++|.+....+..+..
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 5566555555545555555555555555555555422222 2445555555555555443333322222
Q ss_pred ----------------CccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCc
Q 035857 153 ----------------MKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTG 216 (404)
Q Consensus 153 ----------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (404)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 3445555555554444444556666666666666666665555666666666666666666665
Q ss_pred ccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccC
Q 035857 217 SIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGY 296 (404)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (404)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+.++..+++|++|++++|.+...+|..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 55556666666666666666666556666666666666666666666666666666666666666666666556666666
Q ss_pred CCCccEEEcCCccccCCCCchh----------------------------------------------------------
Q 035857 297 LTNLTSLNLGYNQLNSSIPPEL---------------------------------------------------------- 318 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~---------------------------------------------------------- 318 (404)
+++|+.|++++|.+.+..|..+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 6666666666665553333221
Q ss_pred ------------hcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeec
Q 035857 319 ------------MNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVI 386 (404)
Q Consensus 319 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 386 (404)
..+++|+.|++++|.+...+|..+..+++|+.|++++|.+++.+|..++++++|+.|++++|++++.+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 22345666666666666666666666667777777777666666666666667777777777776666
Q ss_pred CCcccccCcc---eeccCcC
Q 035857 387 PKSVLRVPGL---KWSENNL 403 (404)
Q Consensus 387 ~~~~~~~~~l---~~~~~~~ 403 (404)
|..+.+++.| ++++|++
T Consensus 697 p~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEE
T ss_pred ChHHhCCCCCCEEECcCCcc
Confidence 6665544443 3666654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-47 Score=376.05 Aligned_cols=396 Identities=34% Similarity=0.523 Sum_probs=321.5
Q ss_pred ccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCc
Q 035857 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLT 85 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 85 (404)
++++++|++|++++|.+.+..|. +.++++|++|++++|.+++..+..+..+++|++|++++|.+....+.. .+++|+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 47899999999999999987877 999999999999999999888999999999999999999987554443 789999
Q ss_pred EEEccCccccCCCccccCCC-CCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCch-hhcCCccccEEEecC
Q 035857 86 SLNLSLNQLSGRLPQEVGNL-KNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPR-EVGNMKNLKTLLLNR 163 (404)
Q Consensus 86 ~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~ 163 (404)
+|++++|.+.+..|..+... ++|++|++++|.+++..+..+..+++|++|++++|.+....+. .+..+++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 99999999987888887764 9999999999999888888999999999999999998744454 489999999999999
Q ss_pred CCCCCCCcccccccc-cceEEEeccc--------------------------cccCcccccccCccccCeEEeeccccCc
Q 035857 164 NSLTGPIPSTLYHLN-QLRILYLAYN--------------------------NLVGPLSKEVGNLKNLDRLLLNRNNLTG 216 (404)
Q Consensus 164 ~~~~~~~~~~~~~~~-~L~~l~l~~~--------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (404)
|.+....+..+..++ +|+.|++++| .+....+..+..+++|+.|++++|.+..
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccC
Confidence 988654555555544 5555555544 4444445566677777777777777766
Q ss_pred ccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccC
Q 035857 217 SIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGY 296 (404)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (404)
..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+...+|.++..
T Consensus 433 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 66667777777888888888777677777778888888888888887777777888888888888888887777888888
Q ss_pred CCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhh----------------------------------
Q 035857 297 LTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEI---------------------------------- 342 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------------- 342 (404)
+++|++|++++|.+.+..|..+..+++|+.|++++|.+...+|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 8888888888888887788888888888888888887765544432
Q ss_pred ------------------------------------hccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeec
Q 035857 343 ------------------------------------GNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVI 386 (404)
Q Consensus 343 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 386 (404)
..+++|+.|++++|.+++.+|..+++++.|+.|++++|++++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 23467888888888888888889999999999999999999999
Q ss_pred CCcccccCcce---eccCcCC
Q 035857 387 PKSVLRVPGLK---WSENNLE 404 (404)
Q Consensus 387 ~~~~~~~~~l~---~~~~~~~ 404 (404)
|..+.+++.|+ +++|+++
T Consensus 673 p~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 673 PDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCE
T ss_pred ChHHhCCCCCCEEECCCCccc
Confidence 98877666544 8888763
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-45 Score=358.06 Aligned_cols=400 Identities=23% Similarity=0.199 Sum_probs=257.1
Q ss_pred CccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCC
Q 035857 3 PSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLT 82 (404)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 82 (404)
|.+|+++++|++|++++|.+.+..|++|.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+.+++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 55688888888888888888877788888888888888888887766677788888888888888877765566677788
Q ss_pred CCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCcc--EEEccCCcCCC----------------
Q 035857 83 NLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLR--VLFLAYNNLVG---------------- 144 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~---------------- 144 (404)
+|++|++++|.+.......+..+++|+.|++++|.++...+..++.+++|+ .++++++.+..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 888888888877643334444577788888877777655566666666666 55555554432
Q ss_pred -----------------------------------------------------------CCchhhcCCccccEEEecCCC
Q 035857 145 -----------------------------------------------------------PLPREVGNMKNLKTLLLNRNS 165 (404)
Q Consensus 145 -----------------------------------------------------------~~~~~~~~~~~L~~L~l~~~~ 165 (404)
..+..+..+++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 222234455666666666666
Q ss_pred CCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCc-ccCcccCCCCCCCEEEccCCccCCCC--
Q 035857 166 LTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTG-SIPSTIGYLNLLDELDLSHNRLDGPI-- 242 (404)
Q Consensus 166 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-- 242 (404)
+. ..+..+..+++|+.|+++++.+....+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+....
T Consensus 290 l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368 (606)
T ss_dssp CS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES
T ss_pred cC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc
Confidence 55 334445666666666666666655555555666666666666665542 22233556666666666666655332
Q ss_pred hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCC-cccCCCCccEEEcCCccccCCCCchhhcC
Q 035857 243 PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPELMNC 321 (404)
Q Consensus 243 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (404)
+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+....+..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 44556666677777766666655556666666666666666666544332 35566666666666666665555566666
Q ss_pred CCccEEEecCcccccc---CchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCc--c
Q 035857 322 SQLLNLVLSHNSLSGS---IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG--L 396 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~--l 396 (404)
++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..|..|.++++|++|++++|++++..|..+.+++. |
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L 528 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEE
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEE
Confidence 6666666666666542 1234566666666666666666666666666666666666666666666655555543 3
Q ss_pred eeccCcC
Q 035857 397 KWSENNL 403 (404)
Q Consensus 397 ~~~~~~~ 403 (404)
++++|++
T Consensus 529 ~L~~N~l 535 (606)
T 3t6q_A 529 NLASNHI 535 (606)
T ss_dssp ECCSSCC
T ss_pred ECcCCcc
Confidence 3555554
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-45 Score=356.21 Aligned_cols=399 Identities=22% Similarity=0.210 Sum_probs=340.4
Q ss_pred CccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCC
Q 035857 3 PSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLT 82 (404)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 82 (404)
|.+|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+++..+..+..+++|++|++++|.+.......+..++
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 153 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT
T ss_pred hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCc
Confidence 67899999999999999999988899999999999999999999876678889999999999999988865445555588
Q ss_pred CCcEEEccCccccCCCccccCCCCCCc--EEEccCccc------------------------------------------
Q 035857 83 NLTSLNLSLNQLSGRLPQEVGNLKNLD--SLFLDNNNL------------------------------------------ 118 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~------------------------------------------ 118 (404)
+|++|++++|.+....+..++.+++|+ .+++++|.+
T Consensus 154 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~ 233 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233 (606)
T ss_dssp TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECC
T ss_pred ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheech
Confidence 999999998888755566666666666 555555443
Q ss_pred ---------------------------------CCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCC
Q 035857 119 ---------------------------------TGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNS 165 (404)
Q Consensus 119 ---------------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 165 (404)
+...+..+..+++|++|+++++.+. ..+..+..+++|++|++++|.
T Consensus 234 ~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred hhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 3333344677899999999999988 567788999999999999999
Q ss_pred CCCCCcccccccccceEEEeccccccC-cccccccCccccCeEEeeccccCccc--CcccCCCCCCCEEEccCCccCCCC
Q 035857 166 LTGPIPSTLYHLNQLRILYLAYNNLVG-PLSKEVGNLKNLDRLLLNRNNLTGSI--PSTIGYLNLLDELDLSHNRLDGPI 242 (404)
Q Consensus 166 ~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~ 242 (404)
+....+..+..+++|+.|+++++.+.. .....+..+++|+.|++++|.+.... +..+..+++|++|++++|.+....
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 987667788999999999999998763 34456889999999999999987543 567889999999999999988777
Q ss_pred hhhhccCCCcCEEEcCCCccccccC-ccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCC---CCchh
Q 035857 243 PPTIGNLTNLTSLDLSSNQLSGLLP-REVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS---IPPEL 318 (404)
Q Consensus 243 ~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~ 318 (404)
+..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+. .+..+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 472 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred HHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh
Confidence 8889999999999999999876644 4488899999999999999877788899999999999999998762 33568
Q ss_pred hcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCccccc---Cc
Q 035857 319 MNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRV---PG 395 (404)
Q Consensus 319 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~---~~ 395 (404)
..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.+++.| .|++++|++++..|..+..+ ..
T Consensus 473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 899999999999999998888999999999999999999999999999999999 99999999998888776654 55
Q ss_pred ceeccCcC
Q 035857 396 LKWSENNL 403 (404)
Q Consensus 396 l~~~~~~~ 403 (404)
|++++|++
T Consensus 552 L~l~~N~~ 559 (606)
T 3t6q_A 552 INLRQNPL 559 (606)
T ss_dssp EECTTCCE
T ss_pred EeCCCCCc
Confidence 56999986
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.8e-44 Score=345.77 Aligned_cols=379 Identities=23% Similarity=0.184 Sum_probs=178.9
Q ss_pred cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
+|+++++|++|++++|.+.+..|++|.++++|++|++++|.+++..|..|.++++|++|++++|.+....+..++++++|
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence 45566666666666666555555555566666666666665555555556666666666666665554444455556666
Q ss_pred cEEEccCccccC-CCccccCCCCCCcEEEccCcccCCCChhhhhCCCCc----cEEEccCCcCCCCCchhhcCCccccEE
Q 035857 85 TSLNLSLNQLSG-RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL----RVLFLAYNNLVGPLPREVGNMKNLKTL 159 (404)
Q Consensus 85 ~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L 159 (404)
++|++++|.+.. .+|..++++++|++|++++|.++...+..+..+.+| .+++++++.+....+..+.. .+|++|
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L 209 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHEL 209 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeee
Confidence 666666665543 335556666666666666655554333333322222 13343333333221111111 134444
Q ss_pred EecCCCC-------------------------------------------------------------------------
Q 035857 160 LLNRNSL------------------------------------------------------------------------- 166 (404)
Q Consensus 160 ~l~~~~~------------------------------------------------------------------------- 166 (404)
++++|.+
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence 4444322
Q ss_pred --------CCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCcc
Q 035857 167 --------TGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRL 238 (404)
Q Consensus 167 --------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 238 (404)
... + .+..+++|+.|++++|.+... + .+ .+++|+.|++++|..... ..+..+++|+.|++++|.+
T Consensus 290 L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 290 MSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEESCCCCCC-C-CCCTTCCCSEEEEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCE
T ss_pred EEecCccchhh-h-hccccccCCEEEcccccCccc-c-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCcc
Confidence 111 1 223333444444444443211 1 12 334444444444422211 1233445555555555544
Q ss_pred CCC--ChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCC-CcccCCCCccEEEcCCccccCCCC
Q 035857 239 DGP--IPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIP-PTIGYLTNLTSLNLGYNQLNSSIP 315 (404)
Q Consensus 239 ~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~ 315 (404)
... .+..+..+++|+.|++++|.+.... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 322 1344455555555555555544322 344445555555555555443333 344445555555555555544444
Q ss_pred chhhcCCCccEEEecCccccc-cCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccc
Q 035857 316 PELMNCSQLLNLVLSHNSLSG-SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLR 392 (404)
Q Consensus 316 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 392 (404)
..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+++..+..|.++++|++|++++|++++..|..|.+
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 444445555555555554443 23444444455555555555444444444444555555555555554444444433
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-43 Score=341.78 Aligned_cols=389 Identities=22% Similarity=0.228 Sum_probs=265.0
Q ss_pred CccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEcc
Q 035857 11 KLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLS 90 (404)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (404)
++++|+++++.+.+..+.+|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 56667776666666666666666677777776666665555666666677777776666665555666666666666666
Q ss_pred CccccCCCccccCCCCCCcEEEccCcccCC-CChhhhhCCCCccEEEccCCcCCCCCchhhcCCccc----cEEEecCCC
Q 035857 91 LNQLSGRLPQEVGNLKNLDSLFLDNNNLTG-PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNL----KTLLLNRNS 165 (404)
Q Consensus 91 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~ 165 (404)
+|.+....+..++.+++|++|++++|.+.. ..+..+.++++|++|+++++.+....+..++.+++| +++++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 666654333356666666666666666654 235556666666666666666654444444444444 444444444
Q ss_pred CCCCCc--------------------------------------------------------------------------
Q 035857 166 LTGPIP-------------------------------------------------------------------------- 171 (404)
Q Consensus 166 ~~~~~~-------------------------------------------------------------------------- 171 (404)
+....+
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 332211
Q ss_pred -------ccccccccceEEEeccccccCcccccccCccccCeEEeeccccC---------------------cccCcccC
Q 035857 172 -------STLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLT---------------------GSIPSTIG 223 (404)
Q Consensus 172 -------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------------------~~~~~~~~ 223 (404)
..+..+++|+.++++++.+.. .+..+..+ +|+.|++++|.+. ...+. .
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~ 344 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--V 344 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--C
T ss_pred hhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--c
Confidence 122334445555555444432 22222333 3444444443332 11111 4
Q ss_pred CCCCCCEEEccCCccCCCC--hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCC-CcccCCCCc
Q 035857 224 YLNLLDELDLSHNRLDGPI--PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIP-PTIGYLTNL 300 (404)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 300 (404)
.+++|++|++++|.+.... +..+..+++|++|++++|.+....+. +..+++|++|++++|.+....+ ..+..+++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 5677777777777765432 56677888888888888888765544 7888999999999998875544 467889999
Q ss_pred cEEEcCCccccCCCCchhhcCCCccEEEecCcccc-ccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccC
Q 035857 301 TSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLS-GSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSK 379 (404)
Q Consensus 301 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 379 (404)
++|++++|.+.+..+..+..+++|++|++++|.+. ..+|..+..+++|+.|++++|.+++..|..|.++++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999998888888899999999999999987 46778889999999999999999988899999999999999999
Q ss_pred CeeeeecCCcccccCcce---eccCcCC
Q 035857 380 NNLSGVIPKSVLRVPGLK---WSENNLE 404 (404)
Q Consensus 380 ~~~~~~~~~~~~~~~~l~---~~~~~~~ 404 (404)
|++++..|..|.+++.|+ +++|++.
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 999988887777666655 9998863
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-42 Score=341.86 Aligned_cols=380 Identities=26% Similarity=0.317 Sum_probs=202.9
Q ss_pred cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
+|+++++|++|+++++.+.+..|.+|.++++|++|++++|.++...+.+|..+++|++|++++|.+....+..|+++++|
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 46666777777777766666666666666777777777766664444456667777777777766665555566667777
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhh--CCCCccEEEccCCcCCCCCchhhcCC---------
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLY--HLNQLRVLFLAYNNLVGPLPREVGNM--------- 153 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~--------- 153 (404)
++|++++|.+....+..+..+++|++|++++|.++...+..+. .+++|++|+++++.+....+..+..+
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 7777777766655556666677777777776666654444433 34566666666666554444333322
Q ss_pred ------------------ccccEEEecCCCCCCCCccccccccc--ceEEEeccccccCcccccccCccccCeEEeeccc
Q 035857 154 ------------------KNLKTLLLNRNSLTGPIPSTLYHLNQ--LRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNN 213 (404)
Q Consensus 154 ------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 213 (404)
++|++|+++++.+....+..+..++. |+.|++++|.+....+..+..+++|++|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 23333444444333333333444433 6666666665554444555566666666666665
Q ss_pred cCcccCccc---------------------------------CCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCC
Q 035857 214 LTGSIPSTI---------------------------------GYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSN 260 (404)
Q Consensus 214 ~~~~~~~~~---------------------------------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 260 (404)
+....+..+ ..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 543333333 34445555555555554444444555555555555443
Q ss_pred ccc--cccCccccC--CCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCC-chhhcCCCccEEEecCcccc
Q 035857 261 QLS--GLLPREVRN--LKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP-PELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 261 ~~~--~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 335 (404)
.+. ......+.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ ..|..+++|++|++++|.+.
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 211 000001110 0223333333333332333444445555555555555543222 34444555555555555444
Q ss_pred cc--------------------------CchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 336 GS--------------------------IPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 336 ~~--------------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
.. .|..+..+++|+.|++++|.+++..+..|.++++|++|++++|++++
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 33 34445555566666666666555555555666666666666666554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.2e-43 Score=339.28 Aligned_cols=394 Identities=22% Similarity=0.227 Sum_probs=314.2
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..+. +++++|+++++.+.+..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|+++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 566554 689999999999998888899999999999999999998888899999999999999999988878999999
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCC-CChhhhhCCCCccEEEccCCcCCCCCchhhcCCcccc---
Q 035857 82 TNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTG-PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLK--- 157 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--- 157 (404)
++|++|++++|.+....+..++++++|++|++++|.+.. ..+..+.++++|++|+++++.+....+..++.+++|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 999999999999986666889999999999999999875 4578899999999999999999877777777766665
Q ss_pred -EEEecCCCCCCCCcccccccccceEEEeccccccC--------------------------------------------
Q 035857 158 -TLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVG-------------------------------------------- 192 (404)
Q Consensus 158 -~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------------------------------------------- 192 (404)
++++++|.+.......+.. .+|+.++++++.+..
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 262 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262 (606)
T ss_dssp CEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred ceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence 8999999987544444433 377888777764320
Q ss_pred --------------cccccccCccccCeEEeeccccCcccCcccC---------------------CCCCCCEEEccCCc
Q 035857 193 --------------PLSKEVGNLKNLDRLLLNRNNLTGSIPSTIG---------------------YLNLLDELDLSHNR 237 (404)
Q Consensus 193 --------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~L~~L~l~~~~ 237 (404)
..+ .+..+++|+.|+++++.+.. .+ .+. .+++|++|++++|.
T Consensus 263 l~~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK 339 (606)
T ss_dssp EEEEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCS
T ss_pred Hhheecccccccccccc-ccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccccCCCCccceeeccCCc
Confidence 000 12334445555555444431 12 333 44555555555553
Q ss_pred cCCCChhhhccCCCcCEEEcCCCcccccc--CccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCC
Q 035857 238 LDGPIPPTIGNLTNLTSLDLSSNQLSGLL--PREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIP 315 (404)
Q Consensus 238 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 315 (404)
... ...+..+++|+.|++++|.++... +..+..+++|++|++++|.+. .++..+..+++|+.|++++|.+.+..+
T Consensus 340 ~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 416 (606)
T 3vq2_A 340 GSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416 (606)
T ss_dssp SCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred Ccc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccC
Confidence 221 124456778888888888776552 567788899999999999876 456778889999999999999987766
Q ss_pred -chhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccc-cCCccccCCCcceEEEccCCeeeeecCCccccc
Q 035857 316 -PELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFING-TIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRV 393 (404)
Q Consensus 316 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 393 (404)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ..|..++++++|++|++++|++++..|..|.++
T Consensus 417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 678899999999999999998888899999999999999999987 478899999999999999999999988887766
Q ss_pred Ccce---eccCcCC
Q 035857 394 PGLK---WSENNLE 404 (404)
Q Consensus 394 ~~l~---~~~~~~~ 404 (404)
+.|+ +++|++.
T Consensus 497 ~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 497 HRLQLLNMSHNNLL 510 (606)
T ss_dssp TTCCEEECCSSCCS
T ss_pred ccCCEEECCCCcCC
Confidence 6655 9998873
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4e-43 Score=341.47 Aligned_cols=385 Identities=22% Similarity=0.318 Sum_probs=314.4
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccc-------------------------------------------
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNIL------------------------------------------- 46 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------- 46 (404)
.+++.|+++++.+.+.+|..++++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4678888888888888888888888888888887743
Q ss_pred -----------------------------------cCCCCcccCCCCCCcEEEeCCcccccc-----------------C
Q 035857 47 -----------------------------------NGSIPLEFGNLKDLDELRLQGNKLDGL-----------------I 74 (404)
Q Consensus 47 -----------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~ 74 (404)
++ .|..+.++++|++|++++|.+... +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 22 566788899999999999988864 7
Q ss_pred CCccc--CCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcc-cCC-CChhhhhCC------CCccEEEccCCcCCC
Q 035857 75 PSSIG--NLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNN-LTG-PIPSTLYHL------NQLRVLFLAYNNLVG 144 (404)
Q Consensus 75 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~ 144 (404)
+..+. ++++|++|++++|.+...+|..++++++|++|++++|. +++ ..+..++.+ ++|++|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 78888 89999999999998887888899999999999999997 775 566667665 89999999999988
Q ss_pred CCch--hhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccc-cCeEEeeccccCcccCcc
Q 035857 145 PLPR--EVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKN-LDRLLLNRNNLTGSIPST 221 (404)
Q Consensus 145 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~ 221 (404)
.++. .++.+++|++|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.++ ..+..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 6666 78899999999999998874455 7888899999999998887 45566888888 999999999887 55666
Q ss_pred cCCCC--CCCEEEccCCccCCCChhhhc-------cCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCC
Q 035857 222 IGYLN--LLDELDLSHNRLDGPIPPTIG-------NLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPP 292 (404)
Q Consensus 222 ~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (404)
+...+ +|+.|++++|.+....|..+. .+++|+.|++++|+++......+..+++|++|++++|.+. .++.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPK 474 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCH
Confidence 65544 899999999988877777676 6778999999999988776667777899999999999887 4444
Q ss_pred c-ccCC-------CCccEEEcCCccccCCCCchhh--cCCCccEEEecCccccccCchhhhccccceEEEc------cCC
Q 035857 293 T-IGYL-------TNLTSLNLGYNQLNSSIPPELM--NCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL------SHN 356 (404)
Q Consensus 293 ~-~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~ 356 (404)
. +... ++|+.|++++|.+. ..+..+. .+++|+.|++++|.+.. +|..+..+++|+.|++ ++|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 3 3322 28999999999888 5666665 88999999999999985 7888888999999999 457
Q ss_pred cccccCCccccCCCcceEEEccCCeeeeecCC-cccccCcceeccCcC
Q 035857 357 FINGTIPSQLGKITNVSEVDVSKNNLSGVIPK-SVLRVPGLKWSENNL 403 (404)
Q Consensus 357 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~l~~~~~~~ 403 (404)
.+.+..|..+.++++|++|++++|++. .+|. .+.++..|++++|++
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCCTTCCEEECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCCcCC-ccCHhHhCcCCEEECcCCCC
Confidence 777888889999999999999999994 6665 456777788999876
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-42 Score=335.71 Aligned_cols=387 Identities=21% Similarity=0.199 Sum_probs=307.0
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
..+++.++.++. .+|..+ .+++++|+++++.+++..+.+|..+++|++|++++|.+....+..|+++++|++|++++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCS-SCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCcc-ccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 345677776666 455543 35799999999999877788999999999999999999887788899999999999999
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCC-CCchhhcCCccccEEEecCCCCCCCC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVG-PLPREVGNMKNLKTLLLNRNSLTGPI 170 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 170 (404)
|.+....+.+|+++++|++|++++|.+.......++.+++|++|+++++.+.. ..+..++++++|++|++++|++....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 99987777899999999999999999886655568899999999999999886 35788999999999999999987655
Q ss_pred cccccccccc----eEEEeccccccCcc----------------------------------------------------
Q 035857 171 PSTLYHLNQL----RILYLAYNNLVGPL---------------------------------------------------- 194 (404)
Q Consensus 171 ~~~~~~~~~L----~~l~l~~~~~~~~~---------------------------------------------------- 194 (404)
+..+..+++| ..++++++.+....
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 5566666666 56666655433221
Q ss_pred -----------------------------cccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhh
Q 035857 195 -----------------------------SKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPT 245 (404)
Q Consensus 195 -----------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 245 (404)
+..+..+++|+.|+++++.+. ..+..+..+ +|++|++++|.+.......
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~ 323 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLK 323 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCB
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCccc
Confidence 233455677888888887766 344445555 6666666666554221110
Q ss_pred -------------------hccCCCcCEEEcCCCcccccc--CccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEE
Q 035857 246 -------------------IGNLTNLTSLDLSSNQLSGLL--PREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLN 304 (404)
Q Consensus 246 -------------------l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 304 (404)
...+++|+.|++++|++.... +..+..+++|++|++++|.+... +..+..+++|++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~ 402 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLD 402 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEE
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEE
Confidence 145677888888887776443 45677788999999999887643 44488899999999
Q ss_pred cCCccccCCCC-chhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc-ccCCccccCCCcceEEEccCCee
Q 035857 305 LGYNQLNSSIP-PELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKITNVSEVDVSKNNL 382 (404)
Q Consensus 305 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~ 382 (404)
+++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++
T Consensus 403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 99999887655 56788999999999999999888889999999999999999987 56888999999999999999999
Q ss_pred eeecCCcccccCcce---eccCcCC
Q 035857 383 SGVIPKSVLRVPGLK---WSENNLE 404 (404)
Q Consensus 383 ~~~~~~~~~~~~~l~---~~~~~~~ 404 (404)
++..|..|.++++|+ +++|+++
T Consensus 483 ~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 483 EQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ccCChhhhhcccCCCEEeCCCCcCC
Confidence 988898887766655 9998763
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.9e-42 Score=338.16 Aligned_cols=401 Identities=24% Similarity=0.257 Sum_probs=300.2
Q ss_pred CCCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccC
Q 035857 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGN 80 (404)
Q Consensus 1 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 80 (404)
++|..+. +++++|+++++.+.+..+..|.++++|++|+++++.+++..+.++.++++|++|++++|.+.......|++
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 3676665 69999999999999888888999999999999999999888899999999999999999998776668999
Q ss_pred CCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhc--CCccccE
Q 035857 81 LTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVG--NMKNLKT 158 (404)
Q Consensus 81 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~ 158 (404)
+++|++|++++|.+....+.+|+++++|++|++++|.+....+..+..+++|++|+++++.+....+..+. .+++|++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999999867778899999999999999999887777888999999999999999876666554 5689999
Q ss_pred EEecCCCCCCCCcccccccc---------------------------cceEEEeccccccCcccccccCccc--cCeEEe
Q 035857 159 LLLNRNSLTGPIPSTLYHLN---------------------------QLRILYLAYNNLVGPLSKEVGNLKN--LDRLLL 209 (404)
Q Consensus 159 L~l~~~~~~~~~~~~~~~~~---------------------------~L~~l~l~~~~~~~~~~~~~~~~~~--L~~L~l 209 (404)
|++++|.+....+..+..++ +|+.|+++++.+....+..+..++. |+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 99999988866665555544 4566666666666666666777654 999999
Q ss_pred eccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccc---------cccCccccCCCcCcEEE
Q 035857 210 NRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLS---------GLLPREVRNLKYLASLS 280 (404)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~ 280 (404)
++|.+....+..+..+++|+.|++++|.+....+.++..+++|+.|+++++... ......+..+++|++|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 999988666777888999999999999887666666777777777777654322 11112445566666666
Q ss_pred ccCCccCCCCCCcccCCCCccEEEcC----------------------------CccccCCCCchhhcCCCccEEEecCc
Q 035857 281 LNGNNLIGPIPPTIGYLTNLTSLNLG----------------------------YNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 281 l~~~~~~~~~~~~~~~~~~L~~L~l~----------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
+++|.+....+..+..+++|++|+++ +|.+.+..+..+..+++|+.|++++|
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence 66666655444455555555555554 44455455566677788888888888
Q ss_pred cccccCc-hhhhccccceEEEccCCccccc--------------------------CCccccCCCcceEEEccCCeeeee
Q 035857 333 SLSGSIP-SEIGNLIHLRQLDLSHNFINGT--------------------------IPSQLGKITNVSEVDVSKNNLSGV 385 (404)
Q Consensus 333 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--------------------------~~~~~~~~~~L~~l~l~~~~~~~~ 385 (404)
.+.+.++ ..+.++++|++|++++|.+... .|..|.++++|+.|++++|.+++.
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 7765444 5667777777777777765433 344455556666666666666655
Q ss_pred cCCcccccCcce---eccCcC
Q 035857 386 IPKSVLRVPGLK---WSENNL 403 (404)
Q Consensus 386 ~~~~~~~~~~l~---~~~~~~ 403 (404)
.|..|.+++.|+ +++|++
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCC
T ss_pred ChhhhccccccCEEeCCCCCc
Confidence 555554444433 666654
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-42 Score=337.16 Aligned_cols=352 Identities=22% Similarity=0.317 Sum_probs=306.6
Q ss_pred CcccccCCCcccEEeCCCccccCC-----------------CCcccC--CCCCCcEEEeCCccccccCCCcccCCCCCcE
Q 035857 26 IPAEIGSLRNLLKLDLTNNILNGS-----------------IPLEFG--NLKDLDELRLQGNKLDGLIPSSIGNLTNLTS 86 (404)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 86 (404)
+|..+.++++|++|++++|.+++. .|..+. ++++|++|++++|.+....+..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 788899999999999999999864 888888 9999999999999988888999999999999
Q ss_pred EEccCcc-ccC-CCccccCCC------CCCcEEEccCcccCCCChh--hhhCCCCccEEEccCCcCCCCCchhhcCCccc
Q 035857 87 LNLSLNQ-LSG-RLPQEVGNL------KNLDSLFLDNNNLTGPIPS--TLYHLNQLRVLFLAYNNLVGPLPREVGNMKNL 156 (404)
Q Consensus 87 L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 156 (404)
|++++|. +.+ .+|..+..+ ++|++|++++|.++ .++. .+..+++|++|++++|.+....+ .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 776 678777765 99999999999998 6666 89999999999999999985555 88899999
Q ss_pred cEEEecCCCCCCCCccccccccc-ceEEEeccccccCcccccccCcc--ccCeEEeeccccCcccCcccC-------CCC
Q 035857 157 KTLLLNRNSLTGPIPSTLYHLNQ-LRILYLAYNNLVGPLSKEVGNLK--NLDRLLLNRNNLTGSIPSTIG-------YLN 226 (404)
Q Consensus 157 ~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~ 226 (404)
++|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 99999999988 56667889999 999999999988 4455665544 899999999999876666666 678
Q ss_pred CCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCC-------cCcEEEccCCccCCCCCCccc--CC
Q 035857 227 LLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLK-------YLASLSLNGNNLIGPIPPTIG--YL 297 (404)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~~ 297 (404)
+|+.|++++|.+.......+..+++|+.|++++|+++.+....+.... +|+.|++++|.+. .+|..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 999999999999865556677899999999999999866655555433 9999999999998 7777776 89
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEec------CccccccCchhhhccccceEEEccCCcccccCCccccCCCc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLS------HNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITN 371 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 371 (404)
++|+.|++++|.+.+ .|..+..+++|+.|+++ +|.+...+|..+..+++|++|++++|.+. .+|..+. ++
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 588 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PN 588 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TT
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--Cc
Confidence 999999999999997 78888899999999994 57777789999999999999999999994 6777665 79
Q ss_pred ceEEEccCCeeeeec
Q 035857 372 VSEVDVSKNNLSGVI 386 (404)
Q Consensus 372 L~~l~l~~~~~~~~~ 386 (404)
|+.|++++|++....
T Consensus 589 L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 589 ISVLDIKDNPNISID 603 (636)
T ss_dssp CCEEECCSCTTCEEE
T ss_pred CCEEECcCCCCcccc
Confidence 999999999887544
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-42 Score=345.44 Aligned_cols=277 Identities=25% Similarity=0.247 Sum_probs=134.5
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccccC-CCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEE
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLN 88 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 88 (404)
+++++|++++|.+.+..+..|.++++|++|++++|.... +.+.+|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 445555555555554445555555555555555553221 2244455555555555555555444445555555555555
Q ss_pred ccCccccCCCccc--cCCCCCCcEEEccCcccCCCCh-hhhhCCCCccEEEccCCcCCCCCchhhc--------------
Q 035857 89 LSLNQLSGRLPQE--VGNLKNLDSLFLDNNNLTGPIP-STLYHLNQLRVLFLAYNNLVGPLPREVG-------------- 151 (404)
Q Consensus 89 l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------- 151 (404)
+++|.+....+.. ++.+++|++|++++|.+....+ ..+.++++|++|+++++.+....+..+.
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 5555544322222 4455555555555554443222 2344555555555555444333222222
Q ss_pred ------------CCcc------ccEEEecCCCCCCCCcccc------------------------------------cc-
Q 035857 152 ------------NMKN------LKTLLLNRNSLTGPIPSTL------------------------------------YH- 176 (404)
Q Consensus 152 ------------~~~~------L~~L~l~~~~~~~~~~~~~------------------------------------~~- 176 (404)
.+++ |++|++++|.+....+..+ .+
T Consensus 184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l 263 (844)
T 3j0a_A 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL 263 (844)
T ss_dssp SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence 2222 4555555443321111100 00
Q ss_pred -cccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEE
Q 035857 177 -LNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSL 255 (404)
Q Consensus 177 -~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 255 (404)
.++|+.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343 (844)
T ss_dssp TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence 1345555555555544444455555566666666555554444455555556666666655554445555555556666
Q ss_pred EcCCCccccccCccccCCCcCcEEEccCCcc
Q 035857 256 DLSSNQLSGLLPREVRNLKYLASLSLNGNNL 286 (404)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (404)
++++|.+....+..+..+++|+.|++++|.+
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 6655555555444555555555555555544
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=341.93 Aligned_cols=295 Identities=23% Similarity=0.237 Sum_probs=223.4
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcccc-ccCCCcccCCCCCcEEEccC
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLD-GLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~ 91 (404)
+..+.++++++ .+|. ..++|++|++++|.+++..+..|..+++|++|++++|... ...+..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 45677888887 4555 4578999999999999888899999999999999999544 44478899999999999999
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccCCCChhh--hhCCCCccEEEccCCcCCCCCc-hhhcCCccccEEEecCCCCCC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPST--LYHLNQLRVLFLAYNNLVGPLP-REVGNMKNLKTLLLNRNSLTG 168 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 168 (404)
|.+....|++|+++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+ ..++++++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9998778999999999999999999988644443 8899999999999999986544 578999999999999998876
Q ss_pred CCccccccc--ccceEEEeccccccCcccccccC----------------------------------------------
Q 035857 169 PIPSTLYHL--NQLRILYLAYNNLVGPLSKEVGN---------------------------------------------- 200 (404)
Q Consensus 169 ~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~---------------------------------------------- 200 (404)
..+..+..+ ++|+.|+++.+.+....+..+..
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555555544 44555555444433222221111
Q ss_pred ----------------------ccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcC
Q 035857 201 ----------------------LKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLS 258 (404)
Q Consensus 201 ----------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 258 (404)
.++|+.|++++|.+....+..+..+++|+.|++++|.+....+.++.++++|+.|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 2456667776666665555666777777777777777766666677777788888888
Q ss_pred CCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCcccc
Q 035857 259 SNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (404)
+|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 77777666777777788888888887776555556667777777777777654
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-41 Score=332.74 Aligned_cols=345 Identities=19% Similarity=0.288 Sum_probs=251.0
Q ss_pred CCcccCCCCCCcEEEeCCccccc-----------------cCCCccc--CCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 50 IPLEFGNLKDLDELRLQGNKLDG-----------------LIPSSIG--NLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 50 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
+|..+.++++|++|++++|.+.. .++..++ ++++|++|++++|.+...+|..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56667788888888888888775 2566666 8888888888888877777888888888888
Q ss_pred EEccCcc-cCC-CChhhhhCC-------CCccEEEccCCcCCCCCch--hhcCCccccEEEecCCCCCCCCccccccccc
Q 035857 111 LFLDNNN-LTG-PIPSTLYHL-------NQLRVLFLAYNNLVGPLPR--EVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQ 179 (404)
Q Consensus 111 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 179 (404)
|++++|. ++. ..+..+..+ ++|++|++++|.+. .++. .+..+++|++|++++|.+. ..+ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 8888886 664 455545444 48888888888887 5566 7888888888888888877 444 6777888
Q ss_pred ceEEEeccccccCcccccccCccc-cCeEEeeccccCcccCcccCCCC--CCCEEEccCCccCCCChh---hhc--cCCC
Q 035857 180 LRILYLAYNNLVGPLSKEVGNLKN-LDRLLLNRNNLTGSIPSTIGYLN--LLDELDLSHNRLDGPIPP---TIG--NLTN 251 (404)
Q Consensus 180 L~~l~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~---~l~--~~~~ 251 (404)
|+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+. .+. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 888888888777 45556777777 888888888877 5555555444 388888888877643332 122 3357
Q ss_pred cCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccC--------CCCccEEEcCCccccCCCCchhh--cC
Q 035857 252 LTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGY--------LTNLTSLNLGYNQLNSSIPPELM--NC 321 (404)
Q Consensus 252 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~~ 321 (404)
|+.|++++|.+...+...+..+++|+.|++++|.+. .+|..... +++|+.|++++|.+. ..+..+. .+
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l 752 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL 752 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence 888888888887555555567788888888888776 44443322 237888888888777 4555655 77
Q ss_pred CCccEEEecCccccccCchhhhccccceEEEccC------CcccccCCccccCCCcceEEEccCCeeeeecCC-cccccC
Q 035857 322 SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSH------NFINGTIPSQLGKITNVSEVDVSKNNLSGVIPK-SVLRVP 394 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~ 394 (404)
++|+.|++++|.+.. +|..+..+++|+.|++++ |.+.+..|..+.++++|++|++++|++ +.+|. .+.++.
T Consensus 753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~ 830 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLY 830 (876)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSC
T ss_pred CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCC
Confidence 888888888888875 677777888888888865 667777788888888888888888888 46665 345677
Q ss_pred cceeccCcC
Q 035857 395 GLKWSENNL 403 (404)
Q Consensus 395 ~l~~~~~~~ 403 (404)
.|++++|++
T Consensus 831 ~LdLs~N~l 839 (876)
T 4ecn_A 831 ILDIADNPN 839 (876)
T ss_dssp EEECCSCTT
T ss_pred EEECCCCCC
Confidence 777888876
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.7e-41 Score=332.51 Aligned_cols=356 Identities=21% Similarity=0.269 Sum_probs=301.4
Q ss_pred CcccccCCCcccEEeCCCccccCC-----------------CCcccC--CCCCCcEEEeCCccccccCCCcccCCCCCcE
Q 035857 26 IPAEIGSLRNLLKLDLTNNILNGS-----------------IPLEFG--NLKDLDELRLQGNKLDGLIPSSIGNLTNLTS 86 (404)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 86 (404)
+|..+.++++|++|++++|.+++. .|..+. ++++|++|++++|.+....+..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 778899999999999999999862 788877 9999999999999988788899999999999
Q ss_pred EEccCcc-ccC-CCccccCC-------CCCCcEEEccCcccCCCChh--hhhCCCCccEEEccCCcCCCCCchhhcCCcc
Q 035857 87 LNLSLNQ-LSG-RLPQEVGN-------LKNLDSLFLDNNNLTGPIPS--TLYHLNQLRVLFLAYNNLVGPLPREVGNMKN 155 (404)
Q Consensus 87 L~l~~~~-~~~-~~~~~l~~-------~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 155 (404)
|++++|. +.+ .+|..+.. +++|+.|++++|.+. .++. .+.++++|+.|++++|.+. .++ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 765 56665544 459999999999998 6666 8999999999999999998 555 8999999
Q ss_pred ccEEEecCCCCCCCCccccccccc-ceEEEeccccccCcccccccCcc--ccCeEEeeccccCcccCcc---cC--CCCC
Q 035857 156 LKTLLLNRNSLTGPIPSTLYHLNQ-LRILYLAYNNLVGPLSKEVGNLK--NLDRLLLNRNNLTGSIPST---IG--YLNL 227 (404)
Q Consensus 156 L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~ 227 (404)
|++|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999998 66677889999 999999999988 4456666554 4999999999987543321 22 3458
Q ss_pred CCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccC-------CCcCcEEEccCCccCCCCCCccc--CCC
Q 035857 228 LDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRN-------LKYLASLSLNGNNLIGPIPPTIG--YLT 298 (404)
Q Consensus 228 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~ 298 (404)
|+.|++++|.+.......+..+++|+.|++++|++..+....+.. +++|+.|++++|.+. .+|..+. .++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 999999999998554555568999999999999998655544443 349999999999998 7787776 899
Q ss_pred CccEEEcCCccccCCCCchhhcCCCccEEEecC------ccccccCchhhhccccceEEEccCCcccccCCccccCCCcc
Q 035857 299 NLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSH------NSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNV 372 (404)
Q Consensus 299 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 372 (404)
+|+.|++++|.+.+ .+..+..+++|+.|++++ |.+...+|..+..+++|+.|++++|.+ +.+|..+. ++|
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L 829 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL 829 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC
Confidence 99999999999987 677888999999999977 777778999999999999999999999 57777765 699
Q ss_pred eEEEccCCeeeeecCCccc
Q 035857 373 SEVDVSKNNLSGVIPKSVL 391 (404)
Q Consensus 373 ~~l~l~~~~~~~~~~~~~~ 391 (404)
+.|++++|++....+..+.
T Consensus 830 ~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 830 YILDIADNPNISIDVTSVC 848 (876)
T ss_dssp CEEECCSCTTCEEECGGGH
T ss_pred CEEECCCCCCCccChHHcc
Confidence 9999999999877765543
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.7e-41 Score=323.92 Aligned_cols=389 Identities=25% Similarity=0.272 Sum_probs=245.2
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..+. ++|++|+++++.+.+..+..|.++++|++|++++|.+++..+.+|..+++|++|++++|.+....+..|+++
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 455443 577777777777777767777777777777777777776666777777777777777777775555557777
Q ss_pred CCCcEEEccCccccC-CCccccCCCCCCcEEEccCcc-cCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEE
Q 035857 82 TNLTSLNLSLNQLSG-RLPQEVGNLKNLDSLFLDNNN-LTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTL 159 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 159 (404)
++|++|++++|.+.. ..+..++.+++|++|++++|. +....+..+..+++|++|+++++.+....+..+..+++|++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 777777777777664 234567777777777777776 333333456677777777777777665555555555555555
Q ss_pred EecCCCCCCCCcccccccccceEEEeccccccCcc---------------------------------------------
Q 035857 160 LLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPL--------------------------------------------- 194 (404)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--------------------------------------------- 194 (404)
+++++.+.......+..+++|+.|+++++.+....
T Consensus 178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 55554433211111223344444444444332210
Q ss_pred ----------------cccccCc-----------------------------cccCeEEeeccccCcccCccc-CCCCCC
Q 035857 195 ----------------SKEVGNL-----------------------------KNLDRLLLNRNNLTGSIPSTI-GYLNLL 228 (404)
Q Consensus 195 ----------------~~~~~~~-----------------------------~~L~~L~l~~~~~~~~~~~~~-~~~~~L 228 (404)
...+..+ ++|+.|++++|.+. ..+..+ ..+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence 0001111 23444444444433 222222 346667
Q ss_pred CEEEccCCccCCCCh---hhhccCCCcCEEEcCCCccccccC--ccccCCCcCcEEEccCCccCCCCCCcccCCCCccEE
Q 035857 229 DELDLSHNRLDGPIP---PTIGNLTNLTSLDLSSNQLSGLLP--REVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSL 303 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 303 (404)
+.|++++|.+....+ ..+..+++|+.|++++|+++.... ..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEE
Confidence 777777776653322 224566777777777777654432 34666777777777777766 566666677777777
Q ss_pred EcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 304 NLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
++++|.+... +..+ .++|++|++++|.+.+. +..+++|++|++++|.++ .+|. ...+++|+.|++++|+++
T Consensus 416 ~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 416 NLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCcccc-cchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 7777776643 2222 25777777777777643 257889999999999888 4554 467889999999999999
Q ss_pred eecCCcccccCcc---eeccCcC
Q 035857 384 GVIPKSVLRVPGL---KWSENNL 403 (404)
Q Consensus 384 ~~~~~~~~~~~~l---~~~~~~~ 403 (404)
+..|..+.+++.| ++++|++
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCB
T ss_pred CcCHHHHhcCcccCEEEecCCCc
Confidence 8888777666554 4888886
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-39 Score=306.41 Aligned_cols=370 Identities=22% Similarity=0.206 Sum_probs=260.8
Q ss_pred EEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcccc-ccCCCcccCCCCCcEEEccCc
Q 035857 14 ELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLD-GLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 92 (404)
.++.++..+. .+|. -.++|++|+++++.+++..+..+.++++|++|++++|.+. ...+..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4555555554 3343 1256677777777666555666667777777777766654 233455666677777777777
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhh--hhCCCCccEEEccCCcCCCCCchh-hcCCccccEEEecCCCCCCC
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPST--LYHLNQLRVLFLAYNNLVGPLPRE-VGNMKNLKTLLLNRNSLTGP 169 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~ 169 (404)
.+....+.+|+++++|++|++++|.+++..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence 666555666666777777777776665433332 566667777777777666554443 56667777777777766655
Q ss_pred Cccccccc--ccceEEEeccccccCccccc--------ccCccccCeEEeeccccCcccCcccCC---CCCCCEEEccCC
Q 035857 170 IPSTLYHL--NQLRILYLAYNNLVGPLSKE--------VGNLKNLDRLLLNRNNLTGSIPSTIGY---LNLLDELDLSHN 236 (404)
Q Consensus 170 ~~~~~~~~--~~L~~l~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~ 236 (404)
.+..+..+ ++++.++++.+.+....... +..+++|+.|++++|.+.+..+..+.. .++++.|+++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 55555444 56667777666655433222 224466777777777665433333322 266777777766
Q ss_pred ccCC----------CChhhhc--cCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEE
Q 035857 237 RLDG----------PIPPTIG--NLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLN 304 (404)
Q Consensus 237 ~~~~----------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 304 (404)
.... .....+. ..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 4321 1111222 236899999999999888888889999999999999999877777888999999999
Q ss_pred cCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 305 LGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
+++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|+++.
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 99999988778888999999999999999988788899999999999999999998777788999999999999999987
Q ss_pred ecC
Q 035857 385 VIP 387 (404)
Q Consensus 385 ~~~ 387 (404)
..|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 776
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=317.31 Aligned_cols=388 Identities=23% Similarity=0.269 Sum_probs=263.5
Q ss_pred CCCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccC
Q 035857 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGN 80 (404)
Q Consensus 1 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 80 (404)
++|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+... +.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE-ECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec-Ccc--c
Confidence 3676665 7999999999999988888899999999999999999877788899999999999999988743 333 7
Q ss_pred CCCCcEEEccCccccC-CCccccCCCCCCcEEEccCcccCCCChhhhhCCCCc--cEEEccCCcC--CCCCchhhcC---
Q 035857 81 LTNLTSLNLSLNQLSG-RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL--RVLFLAYNNL--VGPLPREVGN--- 152 (404)
Q Consensus 81 l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~--- 152 (404)
+++|++|++++|.+.. ..|..++.+++|++|++++|.+.. ..+..+++| ++|+++++.+ ....+..+..
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence 8999999999999875 367889999999999999988764 356677777 9999988877 4444444433
Q ss_pred -----------------------CccccEEEecCCC-------CCCCCcccccccccceEEEe-----------------
Q 035857 153 -----------------------MKNLKTLLLNRNS-------LTGPIPSTLYHLNQLRILYL----------------- 185 (404)
Q Consensus 153 -----------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~l~l----------------- 185 (404)
+++|+.+++++|. +.... ..+..+++|+.+++
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHHHHHh
Confidence 4555555555543 11111 12333344444433
Q ss_pred ----------ccccccCcccccc-----cCccccCeEEeeccccCcccC-cccCCC---CCCCEEEccCCccCCCChhhh
Q 035857 186 ----------AYNNLVGPLSKEV-----GNLKNLDRLLLNRNNLTGSIP-STIGYL---NLLDELDLSHNRLDGPIPPTI 246 (404)
Q Consensus 186 ----------~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~---~~L~~L~l~~~~~~~~~~~~l 246 (404)
+++.+....+..+ ..+++|+.++++++.+ ..+ ..+... .+++.|++++|.+.... ..
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~ 320 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CP 320 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--ch
Confidence 3333332223333 4444444444444443 111 111111 34555555555544221 12
Q ss_pred ccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCC--CCCCcccCCCCccEEEcCCccccCCCCc-hhhcCCC
Q 035857 247 GNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIG--PIPPTIGYLTNLTSLNLGYNQLNSSIPP-ELMNCSQ 323 (404)
Q Consensus 247 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~ 323 (404)
..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567788888888888877667777778888888888888764 3445577788888888888888763333 4667788
Q ss_pred ccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCc---ceecc
Q 035857 324 LLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG---LKWSE 400 (404)
Q Consensus 324 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~---l~~~~ 400 (404)
|++|++++|.+.+..+..+. ++|+.|++++|.++ .+|..+..+++|++|++++|+++...+..+.+++. |++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence 88888888887655554443 68888888888887 66666668888888888888888433333555544 44888
Q ss_pred CcCC
Q 035857 401 NNLE 404 (404)
Q Consensus 401 ~~~~ 404 (404)
|++.
T Consensus 478 N~~~ 481 (520)
T 2z7x_B 478 NPWD 481 (520)
T ss_dssp SCBC
T ss_pred CCCc
Confidence 8763
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-38 Score=299.81 Aligned_cols=354 Identities=22% Similarity=0.255 Sum_probs=302.9
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccccC-CCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEE
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNG-SIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLN 88 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 88 (404)
++|++|+++++.+.+..+..|.++++|++|+++++.+.+ +.+..|..+++|++|++++|.+....+..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 689999999999998889999999999999999998863 4467799999999999999999888888999999999999
Q ss_pred ccCccccCCCccc--cCCCCCCcEEEccCcccCCCChhh-hhCCCCccEEEccCCcCCCCCchhhcCC--ccccEEEecC
Q 035857 89 LSLNQLSGRLPQE--VGNLKNLDSLFLDNNNLTGPIPST-LYHLNQLRVLFLAYNNLVGPLPREVGNM--KNLKTLLLNR 163 (404)
Q Consensus 89 l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~ 163 (404)
+++|.+.+..+.. ++.+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+ ++|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999987544444 899999999999999998765654 7899999999999999988777777665 7999999999
Q ss_pred CCCCCCCccc--------ccccccceEEEeccccccCcccccccC---ccccCeEEeeccccCcc----------cCccc
Q 035857 164 NSLTGPIPST--------LYHLNQLRILYLAYNNLVGPLSKEVGN---LKNLDRLLLNRNNLTGS----------IPSTI 222 (404)
Q Consensus 164 ~~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~----------~~~~~ 222 (404)
+.+....... +..+++|+.|++++|.+....+..+.. .++++.|+++++..... ....+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9887543322 335689999999999887655555443 38899999998854321 11111
Q ss_pred C--CCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCc
Q 035857 223 G--YLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNL 300 (404)
Q Consensus 223 ~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 300 (404)
. ..++|+.|++++|.+....+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 23689999999999987788889999999999999999998888889999999999999999986677888999999
Q ss_pred cEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCC
Q 035857 301 TSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIP 363 (404)
Q Consensus 301 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 363 (404)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++...|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999998888899999999999999999997666778999999999999999986655
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.5e-39 Score=310.16 Aligned_cols=375 Identities=23% Similarity=0.254 Sum_probs=291.6
Q ss_pred CccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcccccc-CCCcccCC
Q 035857 3 PSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGL-IPSSIGNL 81 (404)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l 81 (404)
|.+|+++++|++|++++|.+.+..+++|.++++|++|++++|.+++..+..+..+++|++|++++|.+... .+..++++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 56799999999999999999988889999999999999999999877777799999999999999998753 45678899
Q ss_pred CCCcEEEccCcc-ccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEE
Q 035857 82 TNLTSLNLSLNQ-LSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLL 160 (404)
Q Consensus 82 ~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 160 (404)
++|++|++++|. +....+..++.+++|++|++++|.+....+..+..+++|++|++.++.+.......+..+++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 999999999987 4433346788999999999999988876677777777777777766665432222233456666666
Q ss_pred ecCCCCCCCC--c-----------------------------------------------------------cccc----
Q 035857 161 LNRNSLTGPI--P-----------------------------------------------------------STLY---- 175 (404)
Q Consensus 161 l~~~~~~~~~--~-----------------------------------------------------------~~~~---- 175 (404)
+++|++.... + ..+.
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 282 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTT
T ss_pred ccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcc
Confidence 6666554310 0 0001
Q ss_pred -------------------------ccccceEEEeccccccCcccccccCccccCeEEeeccccCccc---CcccCCCCC
Q 035857 176 -------------------------HLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSI---PSTIGYLNL 227 (404)
Q Consensus 176 -------------------------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~ 227 (404)
..++|+.++++++.+.......+..+++|+.|++++|.+.+.. +..+..+++
T Consensus 283 L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 1234555555555554333333357899999999999987543 234678899
Q ss_pred CCEEEccCCccCCCC--hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEc
Q 035857 228 LDELDLSHNRLDGPI--PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305 (404)
Q Consensus 228 L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 305 (404)
|+.|++++|.+.... +..+..+++|+.|++++|+++. .+..+..+++|++|++++|.+. .++..+ .++|++|++
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDV 438 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEEC
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-cccchh--cCCceEEEC
Confidence 999999999987532 2458899999999999999984 4566778899999999999987 444333 379999999
Q ss_pred CCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeee
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGV 385 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 385 (404)
++|.+++.. ..+++|++|++++|.+. .+|. ...+++|+.|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 999998643 57899999999999998 5555 46789999999999999988888899999999999999999765
Q ss_pred cC
Q 035857 386 IP 387 (404)
Q Consensus 386 ~~ 387 (404)
.|
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 55
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-37 Score=290.18 Aligned_cols=346 Identities=31% Similarity=0.465 Sum_probs=291.7
Q ss_pred CCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEE
Q 035857 8 ALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSL 87 (404)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 87 (404)
.+++++.|++.++.+.. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+....+ +..+++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46789999999999884 454 7789999999999999985543 8999999999999999875543 8899999999
Q ss_pred EccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCC
Q 035857 88 NLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLT 167 (404)
Q Consensus 88 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 167 (404)
++++|.+... +. +..+++|++|++++|.+... ..+..+++|++|++.+ .+... ..+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 9999998744 33 89999999999999998753 3588999999999964 44433 34889999999999999887
Q ss_pred CCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhc
Q 035857 168 GPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIG 247 (404)
Q Consensus 168 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 247 (404)
.. ..+..+++|+.|+++++.+....+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|.+....+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 54 458889999999999998876544 67799999999999988743 357788999999999999875433 88
Q ss_pred cCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEE
Q 035857 248 NLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNL 327 (404)
Q Consensus 248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 327 (404)
.+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 89999999999999886544 78899999999999998743 33 7889999999999999986544 7789999999
Q ss_pred EecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 328 VLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999854 578899999999999999987766 8899999999999999986
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-37 Score=295.79 Aligned_cols=369 Identities=20% Similarity=0.262 Sum_probs=186.5
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+++|..+++|++|++++|.+... +.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--cc
Confidence 454443 5677777777777766666677777777777777777666666677777777777777766633 222 56
Q ss_pred CCCcEEEccCccccCC-CccccCCCCCCcEEEccCcccCCCChhhhhCCCCc--cEEEccCCcC--CCCCchhhc-----
Q 035857 82 TNLTSLNLSLNQLSGR-LPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL--RVLFLAYNNL--VGPLPREVG----- 151 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~----- 151 (404)
++|++|++++|.+... .|..|+++++|++|+++++.+... .+..+++| ++|+++++.+ ....+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 7777777777766532 245667777777777777666542 23333444 7777766655 333332222
Q ss_pred ---------------------CCccccEEEecCCCCCC----CCccc---------------------------cccccc
Q 035857 152 ---------------------NMKNLKTLLLNRNSLTG----PIPST---------------------------LYHLNQ 179 (404)
Q Consensus 152 ---------------------~~~~L~~L~l~~~~~~~----~~~~~---------------------------~~~~~~ 179 (404)
.+++|+.+++++++... ..... ....++
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 23344455544432000 00000 001126
Q ss_pred ceEEEeccccccCcccccc-----cCccc--------------------------cCeEEeeccccCcccCcccCCCCCC
Q 035857 180 LRILYLAYNNLVGPLSKEV-----GNLKN--------------------------LDRLLLNRNNLTGSIPSTIGYLNLL 228 (404)
Q Consensus 180 L~~l~l~~~~~~~~~~~~~-----~~~~~--------------------------L~~L~l~~~~~~~~~~~~~~~~~~L 228 (404)
|+.|+++++.+....+..+ ..++. ++.|++++|.+.... ....+++|
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L 355 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSF 355 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCc
Confidence 7777777777664444333 33333 333334333332110 01344455
Q ss_pred CEEEccCCccCCCChhhhccCCCcCEEEcCCCcccccc--CccccCCCcCcEEEccCCccCCCCCC-cccCCCCccEEEc
Q 035857 229 DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLL--PREVRNLKYLASLSLNGNNLIGPIPP-TIGYLTNLTSLNL 305 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l 305 (404)
+.|++++|.+....+..+..+++|+.|++++|+++... +..+..+++|+.|++++|.+...++. .+..+++|++|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 55555555554444444455555555555555544321 12344445555555555554432222 2444455555555
Q ss_pred CCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
++|.+.+..+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 55554432222211 35555555555554 33333334555555555555554322222455555555555555544
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.2e-37 Score=300.24 Aligned_cols=399 Identities=21% Similarity=0.212 Sum_probs=283.8
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|+.+. +++++|++++|.+++..+.+|.++++|++|++++|.++++.+++|.++++|++|++++|.+....+..|.++
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 555443 379999999999998888899999999999999999987778889999999999999999987777889999
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCC-ChhhhhCCCCccEEEccCCcCCCCCchhhcCCccc----
Q 035857 82 TNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGP-IPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNL---- 156 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L---- 156 (404)
++|++|++++|.+....+..|+++++|++|++++|.+... .+..+..+++|++|++++|.+....+..+..++++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 9999999999999866667899999999999999988753 45677889999999999998876555544433222
Q ss_pred cEEEecCCCCCCCCcc------------------------cccccccceE------------------------------
Q 035857 157 KTLLLNRNSLTGPIPS------------------------TLYHLNQLRI------------------------------ 182 (404)
Q Consensus 157 ~~L~l~~~~~~~~~~~------------------------~~~~~~~L~~------------------------------ 182 (404)
..++++.+.+....+. .+..++.++.
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 2333433333211000 0111111111
Q ss_pred ---------------------------EEeccccccCcccccccCccccCeEEeeccccCccc-----------------
Q 035857 183 ---------------------------LYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSI----------------- 218 (404)
Q Consensus 183 ---------------------------l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----------------- 218 (404)
+.+..+.+.. ...+.....++.|++.++.+....
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 1111111000 011223344555555554432110
Q ss_pred --CcccCCCCCCCEEEccCCccCC--CChh-----------------------hhccCCCcCEEEcCCCccccc-cCccc
Q 035857 219 --PSTIGYLNLLDELDLSHNRLDG--PIPP-----------------------TIGNLTNLTSLDLSSNQLSGL-LPREV 270 (404)
Q Consensus 219 --~~~~~~~~~L~~L~l~~~~~~~--~~~~-----------------------~l~~~~~L~~L~l~~~~~~~~-~~~~~ 270 (404)
......+++++.++++++.+.. ..+. .+..++.|+.+++..+..... ....+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence 1112345677777777765532 1122 233445555666655544322 23456
Q ss_pred cCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccC-CCCchhhcCCCccEEEecCccccccCchhhhccccce
Q 035857 271 RNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS-SIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLR 349 (404)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 349 (404)
..+++++.++++.|.+....+..+..+++++.|++++|.+.. ..+..|..+++|++|++++|.+.+..+..|.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 667888888888888776677778888999999999987543 4667788899999999999999988888999999999
Q ss_pred EEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccc----cCcceeccCcCC
Q 035857 350 QLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLR----VPGLKWSENNLE 404 (404)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~----~~~l~~~~~~~~ 404 (404)
+|++++|.+++..+..|.++++|+.|++++|++++..|+.+.. +..|++++|++.
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999888899999999999999999999888887654 455679999873
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=293.19 Aligned_cols=382 Identities=21% Similarity=0.219 Sum_probs=292.6
Q ss_pred CCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEE
Q 035857 9 LSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLN 88 (404)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 88 (404)
+...++++++++++++ +|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4455899999999995 665443 8999999999999987778999999999999999999988888999999999999
Q ss_pred ccCccccCCCccccCCCCCCcEEEccCcccCCC-ChhhhhCCCCccEEEccCCcCCCCCchhhcCCccc--cEEEecCCC
Q 035857 89 LSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGP-IPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNL--KTLLLNRNS 165 (404)
Q Consensus 89 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 165 (404)
+++|.+. .+|.. .+++|++|++++|.+... .+..+.++++|++|+++++.+... .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999998 55655 799999999999999863 347899999999999999998753 34455555 999999998
Q ss_pred C--CCCCccccc--------------------------ccccceEEEecccccc-----Ccc------------------
Q 035857 166 L--TGPIPSTLY--------------------------HLNQLRILYLAYNNLV-----GPL------------------ 194 (404)
Q Consensus 166 ~--~~~~~~~~~--------------------------~~~~L~~l~l~~~~~~-----~~~------------------ 194 (404)
+ ....+..+. .+++|+.++++.+... ...
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 7 433333333 3556777777665210 000
Q ss_pred --------cccccCccccCeEEeeccccCcccCccc-----CCC--------------------------CCCCEEEccC
Q 035857 195 --------SKEVGNLKNLDRLLLNRNNLTGSIPSTI-----GYL--------------------------NLLDELDLSH 235 (404)
Q Consensus 195 --------~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~--------------------------~~L~~L~l~~ 235 (404)
.......++|++|++++|.+.+..+..+ ..+ .++++|++++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 0000112378999999988764444433 111 3467777777
Q ss_pred CccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCC--CCCcccCCCCccEEEcCCccccCC
Q 035857 236 NRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGP--IPPTIGYLTNLTSLNLGYNQLNSS 313 (404)
Q Consensus 236 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~ 313 (404)
|.+.... ....+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+...
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 7664321 126789999999999999987888889999999999999998742 235678899999999999999873
Q ss_pred CC-chhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccc
Q 035857 314 IP-PELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLR 392 (404)
Q Consensus 314 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 392 (404)
.+ ..+..+++|++|++++|.+.+..+..+. ++|+.|++++|.++ .+|..+.++++|++|++++|+++...+..+..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 44 4578889999999999999765554443 69999999999998 56666669999999999999999443333666
Q ss_pred cCc---ceeccCcCC
Q 035857 393 VPG---LKWSENNLE 404 (404)
Q Consensus 393 ~~~---l~~~~~~~~ 404 (404)
++. |++++|++.
T Consensus 496 l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 496 LTSLQYIWLHDNPWD 510 (562)
T ss_dssp CTTCCCEECCSCCBC
T ss_pred CCCCCEEEecCCCcC
Confidence 555 559999874
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=299.88 Aligned_cols=376 Identities=22% Similarity=0.251 Sum_probs=280.8
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
++++++++.++ .+|..+. ++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999999 4666554 89999999999999777789999999999999999999877889999999999999999
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCC-CChhhhhCCCCccEEEccCCcCCCCCchhhcCCccc--cEEEecCCCC--C
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTG-PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNL--KTLLLNRNSL--T 167 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~ 167 (404)
.+. .+|.. .+++|++|++++|.++. ..+..++.+++|++|+++++.+.. ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 56665 79999999999999986 356789999999999999999875 456777888 9999999987 3
Q ss_pred CCCccccc--------------------------ccccceEEEecccc-------ccCcccccccCcc------------
Q 035857 168 GPIPSTLY--------------------------HLNQLRILYLAYNN-------LVGPLSKEVGNLK------------ 202 (404)
Q Consensus 168 ~~~~~~~~--------------------------~~~~L~~l~l~~~~-------~~~~~~~~~~~~~------------ 202 (404)
...+..+. .+++|+.++++.+. +....+ .+..++
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 33333333 36667777776654 111111 233334
Q ss_pred ---------------ccCeEEeeccccCcccCccc-----CCCCCCCEEEccCCccCCCChhhhccC---CCcCEEEcCC
Q 035857 203 ---------------NLDRLLLNRNNLTGSIPSTI-----GYLNLLDELDLSHNRLDGPIPPTIGNL---TNLTSLDLSS 259 (404)
Q Consensus 203 ---------------~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~ 259 (404)
+|+.|++++|.+.+..+..+ ..+++|+.++++++.+ ......+..+ ++|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 45555555555443334433 4555556666665555 1211223222 5577777777
Q ss_pred CccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccC--CCCchhhcCCCccEEEecCcccccc
Q 035857 260 NQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS--SIPPELMNCSQLLNLVLSHNSLSGS 337 (404)
Q Consensus 260 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 337 (404)
|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 7665432 12577899999999999887778888889999999999998876 3445678889999999999999864
Q ss_pred Cch-hhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCc---ceeccCcCC
Q 035857 338 IPS-EIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG---LKWSENNLE 404 (404)
Q Consensus 338 ~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~---l~~~~~~~~ 404 (404)
++. .+..+++|+.|++++|.+++..+..+. ++|+.|++++|+++ .+|..+..++. |++++|+|+
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 554 477789999999999998876666554 78999999999998 77765545555 458988874
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-35 Score=277.26 Aligned_cols=361 Identities=29% Similarity=0.424 Sum_probs=295.4
Q ss_pred cccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCC
Q 035857 5 EIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNL 84 (404)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 84 (404)
.++++++|++|++++|.+.+..+ +.++++|++|+++++.+.+..+ +..+++|++|++++|.+.... .+..+++|
T Consensus 63 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L 136 (466)
T 1o6v_A 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNL 136 (466)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC
T ss_pred chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCCC
Confidence 48899999999999999986544 8899999999999999985544 899999999999999987553 38899999
Q ss_pred cEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCC
Q 035857 85 TSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRN 164 (404)
Q Consensus 85 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 164 (404)
++|++++|.+.. .+ .+..+++|+.+++.+ .+... ..+..+++|++|+++++.+... ..+..+++|++|++++|
T Consensus 137 ~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCC
Confidence 999999999874 33 589999999999964 44322 3488999999999999998754 45889999999999999
Q ss_pred CCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChh
Q 035857 165 SLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPP 244 (404)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (404)
.+....+ +..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+....+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 9885433 77899999999999988764 467889999999999999874433 7889999999999999885433
Q ss_pred hhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCc
Q 035857 245 TIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 324 (404)
Q Consensus 245 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 324 (404)
+..+++|+.|++++|++....+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 8899999999999999986544 7789999999999999875443 77899999999999999865 578899999
Q ss_pred cEEEecCccccccCchhhhccccceEEEccCCcccccCCcccc-------CCCcceEEEccCCeeee----ecCCccccc
Q 035857 325 LNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG-------KITNVSEVDVSKNNLSG----VIPKSVLRV 393 (404)
Q Consensus 325 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~l~l~~~~~~~----~~~~~~~~~ 393 (404)
+.|++++|.+.+..| +..+++|+.|++++|.+++. |..+. .+.++....+....++. ..|.++|++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~-p~~~~~~~~ip~~~~~~~~~~~~~~~is~~g~~~~~~~~w~~ 432 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA-PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC-CBCCCSEEEEECCCBCTTSCBCCCSEESTTCEEETTEEEEEC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC-chhhcccceecccccccCCCeecCceecCCcEEeCCceEECC
Confidence 999999999986655 88999999999999998863 32221 12333344455455532 456677777
Q ss_pred Cc
Q 035857 394 PG 395 (404)
Q Consensus 394 ~~ 395 (404)
+.
T Consensus 433 ~~ 434 (466)
T 1o6v_A 433 PS 434 (466)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=280.32 Aligned_cols=321 Identities=25% Similarity=0.248 Sum_probs=270.5
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
+.++.++.++. .+|..+ .+++++|+++++.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777776 455543 357899999999988777788899999999999999888777888889999999999999
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcc
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPS 172 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 172 (404)
.+....+..|.++++|++|++++|.+....+..+..+++|++|+++++.+....+..|..+++|++|++++|.+......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88855556788899999999999988877777888899999999999988877777888899999999999988866666
Q ss_pred cccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCc
Q 035857 173 TLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNL 252 (404)
Q Consensus 173 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 252 (404)
.+..+++|+.|+++++.+.......+..+++|+.|++++|......+.......+|++|++++|.+.......+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 78888999999999988887777788889999999999987665555555555689999999999886666778899999
Q ss_pred CEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCc
Q 035857 253 TSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
+.|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999998888888888999999999999988777888889999999999999998777777888899999999999
Q ss_pred cccc
Q 035857 333 SLSG 336 (404)
Q Consensus 333 ~~~~ 336 (404)
++..
T Consensus 331 ~l~c 334 (477)
T 2id5_A 331 PLAC 334 (477)
T ss_dssp CEEC
T ss_pred CccC
Confidence 8763
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=279.59 Aligned_cols=308 Identities=27% Similarity=0.294 Sum_probs=276.8
Q ss_pred CCccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCC
Q 035857 2 IPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNL 81 (404)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 81 (404)
+|..+. +++++|+++++.+.+..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+.......|.++
T Consensus 26 ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 26 VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 566554 589999999999998889999999999999999999998888999999999999999999987777788999
Q ss_pred CCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEe
Q 035857 82 TNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLL 161 (404)
Q Consensus 82 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 161 (404)
++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|++|+++++.+.......+..+++|++|++
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeC
Confidence 99999999999998777889999999999999999998777778999999999999999999887788999999999999
Q ss_pred cCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCC
Q 035857 162 NRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGP 241 (404)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 241 (404)
+++.+.......+..+++|+.|+++++......+.......+|+.|++++|.++......+..+++|+.|++++|.+...
T Consensus 184 ~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 263 (477)
T 2id5_A 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI 263 (477)
T ss_dssp ESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCcc
Confidence 99999876667889999999999999876655555555566999999999999855445788899999999999999877
Q ss_pred ChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCcccc
Q 035857 242 IPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (404)
.+..+..+++|+.|++++|++....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 264 EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 7778899999999999999999888889999999999999999998666667888999999999999886
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.8e-35 Score=285.27 Aligned_cols=378 Identities=25% Similarity=0.251 Sum_probs=280.4
Q ss_pred ccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCC
Q 035857 4 SEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTN 83 (404)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 83 (404)
.+|+++++|++|++++|++.+..+++|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|+++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 47999999999999999999888899999999999999999998777778999999999999999998777778999999
Q ss_pred CcEEEccCccccC-CCccccCCCCCCcEEEccCcccCCCChhhhhCCCCc----cEEEccCCcCCCCCch----------
Q 035857 84 LTSLNLSLNQLSG-RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL----RVLFLAYNNLVGPLPR---------- 148 (404)
Q Consensus 84 L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~---------- 148 (404)
|++|++++|.+.. ..+..++.+++|++|++++|.+....+..+..++++ ..++++.+.+....+.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 9999999999864 357788999999999999998876555544433222 2333333322211000
Q ss_pred --------------hhcCCc---------------------------------------------------------ccc
Q 035857 149 --------------EVGNMK---------------------------------------------------------NLK 157 (404)
Q Consensus 149 --------------~~~~~~---------------------------------------------------------~L~ 157 (404)
.+..++ +++
T Consensus 230 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 309 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS 309 (635)
T ss_dssp EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred hhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence 001111 111
Q ss_pred EEEecCCCCCCCCcccccccccceEEEeccccccCcc-------------------cccccCccccCeEEeeccccCc--
Q 035857 158 TLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPL-------------------SKEVGNLKNLDRLLLNRNNLTG-- 216 (404)
Q Consensus 158 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~~~~~~~L~~L~l~~~~~~~-- 216 (404)
.+.+.++.+.. ...+.....++.+++..+.+.... ......+++|+.++++.+.+..
T Consensus 310 ~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 310 SFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp EEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred ccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 11111111110 011222234444444443322110 1112234556666665554421
Q ss_pred -----------------------ccCcccCCCCCCCEEEccCCccCCC-ChhhhccCCCcCEEEcCCCccccccCccccC
Q 035857 217 -----------------------SIPSTIGYLNLLDELDLSHNRLDGP-IPPTIGNLTNLTSLDLSSNQLSGLLPREVRN 272 (404)
Q Consensus 217 -----------------------~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 272 (404)
..+..+..+++++.+++..+..... ....+..+++++.++++.+.+....+..+..
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 1223445667788888887765443 2355788899999999999998888888899
Q ss_pred CCcCcEEEccCCccCC-CCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEE
Q 035857 273 LKYLASLSLNGNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQL 351 (404)
Q Consensus 273 ~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 351 (404)
+++++.|++++|.... ..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|+.|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 9999999999997543 467788999999999999999998888999999999999999999998888899999999999
Q ss_pred EccCCcccccCCccccCC-CcceEEEccCCeee
Q 035857 352 DLSHNFINGTIPSQLGKI-TNVSEVDVSKNNLS 383 (404)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~ 383 (404)
++++|.+++..+..|.++ ++|+.|++++|++.
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999999988 68999999999996
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-33 Score=255.67 Aligned_cols=305 Identities=30% Similarity=0.435 Sum_probs=194.5
Q ss_pred CCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEE
Q 035857 56 NLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVL 135 (404)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 135 (404)
.+++|++|+++++.+... ..+..+++|++|++++|.+.. .+. +..+++|++|++++|.++.. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 445555555555554422 224455555555555555542 222 55555555555555555432 235555556666
Q ss_pred EccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccC
Q 035857 136 FLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLT 215 (404)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 215 (404)
+++++.+..... +..+++|++|++++|...... ..+..+++|+.++++++.+..... +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 665555553321 555666666666666433222 235556666666666655543322 556667777777777665
Q ss_pred cccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCccc
Q 035857 216 GSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIG 295 (404)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (404)
+..+ +..+++|+.|++++|.+....+ +..+++|++|++++|.++...+ +..+++|++|++++|.+.+. ..+.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh
Confidence 3222 5667777788887777764322 6777788888888887765543 66778888888888877632 4577
Q ss_pred CCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEE
Q 035857 296 YLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEV 375 (404)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 375 (404)
.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++..+ +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 788888888888888754 457788888888888888887777788888888888888888876555 7788888899
Q ss_pred EccCCeee
Q 035857 376 DVSKNNLS 383 (404)
Q Consensus 376 ~l~~~~~~ 383 (404)
++++|+++
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 98888875
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.3e-33 Score=252.05 Aligned_cols=306 Identities=25% Similarity=0.415 Sum_probs=229.9
Q ss_pred cCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 31 GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
..+++|++|+++++.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. + .++..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 4567777777777776632 2 36677777777777777664322 6777777777777777663 2 35777778888
Q ss_pred EEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccc
Q 035857 111 LFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 111 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
|++++|.+.... . +..+++|++|+++++...... ..+..+++|++|++++|.+.... .+..+++|+.|+++++.+
T Consensus 115 L~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCcc
Confidence 888777776432 2 667778888888777554333 34777888888888888776432 267788888888888877
Q ss_pred cCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccc
Q 035857 191 VGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREV 270 (404)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 270 (404)
..... +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.++.. ..+
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 65433 6778888888888888774322 6778899999999998874433 78889999999999988764 457
Q ss_pred cCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceE
Q 035857 271 RNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQ 350 (404)
Q Consensus 271 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 350 (404)
..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 7889999999999988743 457889999999999999988777888999999999999999986544 888999999
Q ss_pred EEccCCccc
Q 035857 351 LDLSHNFIN 359 (404)
Q Consensus 351 L~l~~~~~~ 359 (404)
|++++|.++
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999875
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-33 Score=264.02 Aligned_cols=343 Identities=23% Similarity=0.219 Sum_probs=250.2
Q ss_pred ccccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCC
Q 035857 4 SEIGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTN 83 (404)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 83 (404)
..++++++|++|+++++.+.+. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+... .++.+++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCc
Confidence 4577889999999999999864 5 588899999999999998864 3 78899999999999998754 2788999
Q ss_pred CcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecC
Q 035857 84 LTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNR 163 (404)
Q Consensus 84 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 163 (404)
|++|++++|.+.. ++ ++.+++|++|++++|.++.. .+..+++|++|++++|...... .+..+++|++|++++
T Consensus 108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 9999999998874 33 88899999999999988864 3778899999999998543333 477889999999999
Q ss_pred CCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCCh
Q 035857 164 NSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIP 243 (404)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 243 (404)
|.+... + +..+++|+.|++++|.+... .+..+++|+.|++++|.+++ .+ +..+++|+.|++++|.+....
T Consensus 180 n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 180 NKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp SCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred Ccccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 988853 2 77889999999999888764 47888999999999999885 33 778899999999999887543
Q ss_pred hhhccCCCcCEEEcCCCcccccc--------CccccCCCcCcEEEccCCccCCCCCC--------cccCCCCccEEEcCC
Q 035857 244 PTIGNLTNLTSLDLSSNQLSGLL--------PREVRNLKYLASLSLNGNNLIGPIPP--------TIGYLTNLTSLNLGY 307 (404)
Q Consensus 244 ~~l~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~ 307 (404)
...+++|+.|+++++++.... ...+..+++|+.|++++|.....++. .+..+++|+.|++++
T Consensus 250 --~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp --CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred --HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 345566666655554433211 11234567788888887764332221 244556666666666
Q ss_pred ccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecC
Q 035857 308 NQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIP 387 (404)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 387 (404)
|.+++. .+..+++|+.|++++|.+.+ ++.|+.|++.+|.+.+. ..+..|..+++++|++++.+|
T Consensus 328 N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 328 TELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp CCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred Cccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 666653 25566666777776666653 13344444555544432 234567777888888888887
Q ss_pred Ccc
Q 035857 388 KSV 390 (404)
Q Consensus 388 ~~~ 390 (404)
..+
T Consensus 392 ~~~ 394 (457)
T 3bz5_A 392 PDL 394 (457)
T ss_dssp TTC
T ss_pred hhH
Confidence 653
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=258.89 Aligned_cols=308 Identities=20% Similarity=0.194 Sum_probs=160.3
Q ss_pred CcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEc
Q 035857 34 RNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFL 113 (404)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 113 (404)
++++.|++.++.++...+..+..+++|++|+++++.+....+..|..+++|++|++++|.+....+..++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 55666666666555333333455666666666666655544455556666666666666655444555556666666666
Q ss_pred cCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCc
Q 035857 114 DNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGP 193 (404)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 193 (404)
++|.+.......+..+++|++|+++++.+....+..+..+++|++|++++|++... .+..+++|+.++++++.+..
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-
Confidence 66655544334445556666666666555554444555555666666655555422 23344555555555544332
Q ss_pred ccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCC
Q 035857 194 LSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNL 273 (404)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (404)
+...++|+.|++++|.+... +. ..+++|+.|++++|.+++. ..+..+
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~-~~--------------------------~~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVV-RG--------------------------PVNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEE-EC--------------------------CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ----cCCCCcceEEECCCCeeeec-cc--------------------------cccccccEEECCCCCCccc--HHHcCC
Confidence 12223445555554444321 11 1124455555555444432 234444
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEc
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL 353 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 353 (404)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. .+..+..+++|++|++++|.+. .++..+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 555555555555443344445555555555555555543 2223344556666666666555 34444555666666666
Q ss_pred cCCcccccCCccccCCCcceEEEccCCeee
Q 035857 354 SHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
++|.++.. .+..+++|++|++++|++.
T Consensus 326 ~~N~i~~~---~~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 326 DHNSIVTL---KLSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCCCC---CCCTTCCCSEEECCSSCEE
T ss_pred CCCcccee---CchhhccCCEEEcCCCCcc
Confidence 66665533 1455566666666666665
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=257.34 Aligned_cols=308 Identities=20% Similarity=0.228 Sum_probs=214.4
Q ss_pred CCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEE
Q 035857 57 LKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLF 136 (404)
Q Consensus 57 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 136 (404)
++++++++++++.+.......+..+++|++|+++++.+....+.+|+.+++|++|++++|.+....
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------------- 109 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-------------- 109 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--------------
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC--------------
Confidence 355555555555555443334455555555555555554333344555555555555555544443
Q ss_pred ccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCc
Q 035857 137 LAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTG 216 (404)
Q Consensus 137 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (404)
+..+..+++|++|++++|++.......+..+++|+.|+++++.+....+..+..+++|+.|++++|.++.
T Consensus 110 ----------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 110 ----------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred ----------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 3444444555555555554443333334455555555555555554445556666666666666666653
Q ss_pred ccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccC
Q 035857 217 SIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGY 296 (404)
Q Consensus 217 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (404)
. .+..+++|+.|++++|.+.. +...+.|+.|++++|.+..... ..+++|+.|++++|.+.+. ..+..
T Consensus 180 ~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 180 V---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp C---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred c---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcC
Confidence 2 24456778888888876652 2345689999999998876533 2358999999999998743 57889
Q ss_pred CCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEE
Q 035857 297 LTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVD 376 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 376 (404)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ++..+..+++|+.|++++|.+. .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 9999999999999998888899999999999999999984 5666678999999999999998 5677788899999999
Q ss_pred ccCCeeeeecCCcccccCcceeccCcC
Q 035857 377 VSKNNLSGVIPKSVLRVPGLKWSENNL 403 (404)
Q Consensus 377 l~~~~~~~~~~~~~~~~~~l~~~~~~~ 403 (404)
+++|+++......+.+++.|++++|++
T Consensus 325 L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 325 LDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCccceeCchhhccCCEEEcCCCCc
Confidence 999999977667788888899999986
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.2e-33 Score=257.75 Aligned_cols=341 Identities=26% Similarity=0.323 Sum_probs=153.8
Q ss_pred CCCccccCCCCccEEEcCCCcccccCcccccCCCcc-------------cEEeCCCccccCCCCcccCCCCCCcEEEeCC
Q 035857 1 RIPSEIGALSKLEELDLSYNSLTGTIPAEIGSLRNL-------------LKLDLTNNILNGSIPLEFGNLKDLDELRLQG 67 (404)
Q Consensus 1 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 67 (404)
+||+.++++++|++|+++++.+.+..|..++.+++| ++|+++++.+++ .|. -.++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccC
Confidence 367777777777777777777777777777666654 667777766653 222 125666666666
Q ss_pred ccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCc
Q 035857 68 NKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLP 147 (404)
Q Consensus 68 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 147 (404)
|.+.. ++.. .++|++|++++|.+. .++.. .++|++|++++|.++. ++ .+..+++|++|++++|.+.. .+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CC
T ss_pred CcCCc-cccc---cCCCcEEECCCCccC-cccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cC
Confidence 65553 2221 244555555555443 11111 1345555555555443 22 24455555555555554442 11
Q ss_pred hhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCC
Q 035857 148 REVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNL 227 (404)
Q Consensus 148 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (404)
.. .++|++|++++|.+.. .+ .+.++++|+.|++++|.+..... ..++|+.|++++|.+. ..+ .+..+++
T Consensus 170 ~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~ 238 (454)
T 1jl5_A 170 DL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILE-ELP-ELQNLPF 238 (454)
T ss_dssp CC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTT
T ss_pred CC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCC-ccc-ccCCCCC
Confidence 11 1345555555554443 12 34444555555555444432111 1134444444444443 222 2344444
Q ss_pred CCEEEccCCccCCCChhhh-----------------ccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCC
Q 035857 228 LDELDLSHNRLDGPIPPTI-----------------GNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPI 290 (404)
Q Consensus 228 L~~L~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (404)
|+.|++++|.+.. .+... ..+++|+.|++++|+++.... ..++|+.|++++|.+.+ +
T Consensus 239 L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~-i 312 (454)
T 1jl5_A 239 LTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRS-L 312 (454)
T ss_dssp CCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSE-E
T ss_pred CCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCc-c
Confidence 4444444444432 11110 012344444444444432210 11345555555554432 1
Q ss_pred CCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccc--cCCccccC
Q 035857 291 PPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFING--TIPSQLGK 368 (404)
Q Consensus 291 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 368 (404)
+. ..++|++|++++|.+.+ .+.. +++|+.|++++|.+. .+|. .+++|+.|++++|.+++ .+|..+++
T Consensus 313 ~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 313 CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 10 11466666666666654 2222 366777777777666 3443 35677777777777665 45566655
Q ss_pred C-------------CcceEEEccCCeeee
Q 035857 369 I-------------TNVSEVDVSKNNLSG 384 (404)
Q Consensus 369 ~-------------~~L~~l~l~~~~~~~ 384 (404)
+ ++|+.|++++|++++
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp EECCC------------------------
T ss_pred hhhcccccccccccCcCCEEECCCCcCCc
Confidence 5 567777777777764
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-32 Score=256.31 Aligned_cols=338 Identities=25% Similarity=0.246 Sum_probs=245.4
Q ss_pred cccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCcccc
Q 035857 23 TGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEV 102 (404)
Q Consensus 23 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 102 (404)
....+..+.++++|++|+++++.+++. | .+..+++|++|++++|.+... .+..+++|++|++++|.+... + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--c
Confidence 334455677889999999999999854 4 688999999999999998864 278899999999999998743 3 8
Q ss_pred CCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceE
Q 035857 103 GNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRI 182 (404)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 182 (404)
+.+++|++|++++|.++.. .+..+++|++|++++|.+... .++.+++|++|++++|...... .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 8899999999999988864 278899999999999998864 3778899999999999544333 4778899999
Q ss_pred EEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCcc
Q 035857 183 LYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQL 262 (404)
Q Consensus 183 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 262 (404)
|+++++.+.... +..+++|+.|++++|.++.. .+..+++|+.|++++|++.. .+ +..+++|+.|++++|++
T Consensus 175 L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred EECCCCccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence 999999887642 77889999999999988743 37788999999999999885 34 77889999999999998
Q ss_pred ccccCccccCCCcCcEEEccCCccC----------CCCCCcccCCCCccEEEcCCccccCCCCc--------hhhcCCCc
Q 035857 263 SGLLPREVRNLKYLASLSLNGNNLI----------GPIPPTIGYLTNLTSLNLGYNQLNSSIPP--------ELMNCSQL 324 (404)
Q Consensus 263 ~~~~~~~~~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L 324 (404)
+.... ..+++|+.++++++.+. ..++ +..+++|+.|++++|...+..+. .+..+++|
T Consensus 246 ~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 246 TELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp SCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 86543 34566666665554432 2221 34567777777777754332221 23445566
Q ss_pred cEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcceeccCcC
Q 035857 325 LNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLKWSENNL 403 (404)
Q Consensus 325 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 403 (404)
++|++++|.+... .+..|++|+.|++++|.+++ ++.|..|.+++|.+.+. ..+..++.+.+++|++
T Consensus 321 ~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 321 VYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSL 386 (457)
T ss_dssp CEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBE
T ss_pred CEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCccccccCcE
Confidence 6666666666542 25566666666666666553 23445555666666544 2344556666777765
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=264.87 Aligned_cols=307 Identities=21% Similarity=0.236 Sum_probs=161.8
Q ss_pred CcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEc
Q 035857 34 RNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFL 113 (404)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 113 (404)
++++.+++.++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|+.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 45666666666665444444556666666666666665555556666666666666666665555555566666666666
Q ss_pred cCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCc
Q 035857 114 DNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGP 193 (404)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 193 (404)
++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.++++++.+..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-
Confidence 66666544444455666666666666666555555566666666666666655532 23445556666665554432
Q ss_pred ccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCC
Q 035857 194 LSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNL 273 (404)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (404)
+...++|+.|++++|.+..... . ..++|+.|++++|.+.. +..+..+++|+.|++++|.+....+..+..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~-~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRG-P--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEEC-S--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCccccccc-c--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 2233455555555555542111 1 12455555555555542 2344555555555555555554444555555
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEc
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL 353 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 353 (404)
++|+.|++++|.+. .++..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+... .+..+++|+.|++
T Consensus 278 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L~l 352 (597)
T 3oja_B 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTL 352 (597)
T ss_dssp SSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEEC
T ss_pred cCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEEEe
Confidence 55555555555544 22333334455555555555444 2333344444555555555544422 1333444444444
Q ss_pred cCCcc
Q 035857 354 SHNFI 358 (404)
Q Consensus 354 ~~~~~ 358 (404)
++|++
T Consensus 353 ~~N~~ 357 (597)
T 3oja_B 353 SHNDW 357 (597)
T ss_dssp CSSCE
T ss_pred eCCCC
Confidence 44444
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.9e-32 Score=251.94 Aligned_cols=353 Identities=28% Similarity=0.336 Sum_probs=241.4
Q ss_pred CCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCC-------------cEEEeCCccccccC
Q 035857 8 ALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDL-------------DELRLQGNKLDGLI 74 (404)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~l~~~~~~~~~ 74 (404)
+.++|++|+++++.+ +.+|..++++++|++|++++|.+.+..|..+..+.+| ++|+++++.+...
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 458999999999999 6899999999999999999999988899999888765 9999999988743
Q ss_pred CCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCc
Q 035857 75 PSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMK 154 (404)
Q Consensus 75 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 154 (404)
+.. .++|++|++++|.+.. +|.. .++|+.|++++|.+... +. ..++|++|++++|.+.. .+ .++.++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 222 3789999999999984 5543 47999999999988742 11 12689999999999985 44 699999
Q ss_pred cccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEcc
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLS 234 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (404)
+|++|++++|++.. .+. ..++|+.|++++|.+.... .+..+++|+.|++++|.++. .+. ..++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~---~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCC---CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECc
Confidence 99999999999874 332 2369999999999988642 68999999999999999874 332 23689999999
Q ss_pred CCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCC-
Q 035857 235 HNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS- 313 (404)
Q Consensus 235 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~- 313 (404)
+|.+. ..+ .+..+++|+.|++++|+++.... .+++|+.|++++|.+.+ ++.. +++|++|++++|.+.+.
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 99988 455 48899999999999999875432 24788888888888763 4432 36677777777766541
Q ss_pred -CCch-------------hhcC-CCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEcc
Q 035857 314 -IPPE-------------LMNC-SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVS 378 (404)
Q Consensus 314 -~~~~-------------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 378 (404)
.+.. +..+ ++|+.|++++|.+.+ ++.. +++|+.|++++|.++. +|. .+++|++|+++
T Consensus 294 ~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVE 365 (454)
T ss_dssp CCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECC
Confidence 1111 1122 477788888877764 3432 5788899998888874 454 46889999999
Q ss_pred CCeeee--ecCCccc----------------ccCcceeccCcC
Q 035857 379 KNNLSG--VIPKSVL----------------RVPGLKWSENNL 403 (404)
Q Consensus 379 ~~~~~~--~~~~~~~----------------~~~~l~~~~~~~ 403 (404)
+|++++ .+|..+. +++.|++++|++
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 999987 6776664 445566888876
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-32 Score=263.72 Aligned_cols=312 Identities=21% Similarity=0.200 Sum_probs=270.8
Q ss_pred CCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEE
Q 035857 56 NLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVL 135 (404)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 135 (404)
.+.+++.++++++.+....+..+..+++|++|++++|.+....+.+|+.+++|+.|++++|.++...+..|+.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46799999999999987777778899999999999999987777799999999999999999998888888999999999
Q ss_pred EccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccC
Q 035857 136 FLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLT 215 (404)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 215 (404)
++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999999977666678999999999999999877777899999999999999988754 3567899999999999876
Q ss_pred cccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCccc
Q 035857 216 GSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIG 295 (404)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (404)
. +...++|+.|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 2 34567899999999988643 221 237899999999999853 6688899999999999999877788899
Q ss_pred CCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEE
Q 035857 296 YLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEV 375 (404)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 375 (404)
.+++|+.|++++|.+.. .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+... .+..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEE
Confidence 99999999999999986 3555567899999999999998 6788889999999999999999854 37788999999
Q ss_pred EccCCeeeee
Q 035857 376 DVSKNNLSGV 385 (404)
Q Consensus 376 ~l~~~~~~~~ 385 (404)
++++|++...
T Consensus 351 ~l~~N~~~~~ 360 (597)
T 3oja_B 351 TLSHNDWDCN 360 (597)
T ss_dssp ECCSSCEEHH
T ss_pred EeeCCCCCCh
Confidence 9999999743
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.6e-35 Score=278.59 Aligned_cols=380 Identities=21% Similarity=0.181 Sum_probs=279.7
Q ss_pred CCCccEEEcCCCcccccCcc-cccCCCcccEEeCCCccccC----CCCcccCCCCCCcEEEeCCccccccCCCcc-cCCC
Q 035857 9 LSKLEELDLSYNSLTGTIPA-EIGSLRNLLKLDLTNNILNG----SIPLEFGNLKDLDELRLQGNKLDGLIPSSI-GNLT 82 (404)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~ 82 (404)
.+++++|+++++++.+.... .+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+.....+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 35789999999998754433 37788999999999998863 235567788999999999998865433222 2344
Q ss_pred ----CCcEEEccCccccC----CCccccCCCCCCcEEEccCcccCCCChhhhh-----CCCCccEEEccCCcCCCCC---
Q 035857 83 ----NLTSLNLSLNQLSG----RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLY-----HLNQLRVLFLAYNNLVGPL--- 146 (404)
Q Consensus 83 ----~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~--- 146 (404)
+|++|++++|.+.. .++..+..+++|++|++++|.+.......+. ..++|++|++++|.+....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999998874 3477889999999999999987644333332 2567999999999887643
Q ss_pred -chhhcCCccccEEEecCCCCCCCCccccc-----ccccceEEEeccccccCc----ccccccCccccCeEEeeccccCc
Q 035857 147 -PREVGNMKNLKTLLLNRNSLTGPIPSTLY-----HLNQLRILYLAYNNLVGP----LSKEVGNLKNLDRLLLNRNNLTG 216 (404)
Q Consensus 147 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 216 (404)
+..+..+++|++|++++|.+.......+. ..++|+.|++++|.++.. ....+..+++|+.|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 45566789999999999987643323332 256899999999987764 34556678999999999998764
Q ss_pred cc-----CcccCCCCCCCEEEccCCccCCC----ChhhhccCCCcCEEEcCCCccccccCccccC-----CCcCcEEEcc
Q 035857 217 SI-----PSTIGYLNLLDELDLSHNRLDGP----IPPTIGNLTNLTSLDLSSNQLSGLLPREVRN-----LKYLASLSLN 282 (404)
Q Consensus 217 ~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~ 282 (404)
.. +..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+.....+.. .++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 22 22233578999999999988743 4556777899999999999886544333322 3689999999
Q ss_pred CCccCCC----CCCcccCCCCccEEEcCCccccCCCCchhhc-----CCCccEEEecCccccc----cCchhhhccccce
Q 035857 283 GNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIPPELMN-----CSQLLNLVLSHNSLSG----SIPSEIGNLIHLR 349 (404)
Q Consensus 283 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 349 (404)
+|.+.+. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 9987654 3445667799999999999887655444432 6799999999998875 5677778889999
Q ss_pred EEEccCCcccccCCcccc-----CCCcceEEEccCCeeeeecCC
Q 035857 350 QLDLSHNFINGTIPSQLG-----KITNVSEVDVSKNNLSGVIPK 388 (404)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~-----~~~~L~~l~l~~~~~~~~~~~ 388 (404)
+|++++|++++.....+. ....|+.|.+.++.+....++
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 999999988755333332 234688888888877654443
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2.9e-35 Score=276.75 Aligned_cols=371 Identities=23% Similarity=0.185 Sum_probs=281.6
Q ss_pred CCcccEEeCCCccccCCCCcc-cCCCCCCcEEEeCCcccccc----CCCcccCCCCCcEEEccCccccCCCcccc-CCCC
Q 035857 33 LRNLLKLDLTNNILNGSIPLE-FGNLKDLDELRLQGNKLDGL----IPSSIGNLTNLTSLNLSLNQLSGRLPQEV-GNLK 106 (404)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~ 106 (404)
.++|++|+++++.+++..... +..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 367999999999886433333 77899999999999998743 34567778999999999998864433333 2344
Q ss_pred ----CCcEEEccCcccCC----CChhhhhCCCCccEEEccCCcCCCCCchhhc-----CCccccEEEecCCCCCCCC---
Q 035857 107 ----NLDSLFLDNNNLTG----PIPSTLYHLNQLRVLFLAYNNLVGPLPREVG-----NMKNLKTLLLNRNSLTGPI--- 170 (404)
Q Consensus 107 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~--- 170 (404)
+|++|++++|.++. .++..+..+++|++|+++++.+.+..+..+. ..++|++|++++|++....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999884 3366788999999999999998754444333 2568999999999887533
Q ss_pred -cccccccccceEEEeccccccCccccccc-----CccccCeEEeeccccCcc----cCcccCCCCCCCEEEccCCccCC
Q 035857 171 -PSTLYHLNQLRILYLAYNNLVGPLSKEVG-----NLKNLDRLLLNRNNLTGS----IPSTIGYLNLLDELDLSHNRLDG 240 (404)
Q Consensus 171 -~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 240 (404)
+..+..+++|+.|+++++.+.......+. ..++|+.|++++|.+++. .+..+..+++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 44556789999999999987654333332 356999999999998753 35566778999999999998764
Q ss_pred CCh-----hhhccCCCcCEEEcCCCccccc----cCccccCCCcCcEEEccCCccCCCCCCccc-----CCCCccEEEcC
Q 035857 241 PIP-----PTIGNLTNLTSLDLSSNQLSGL----LPREVRNLKYLASLSLNGNNLIGPIPPTIG-----YLTNLTSLNLG 306 (404)
Q Consensus 241 ~~~-----~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~ 306 (404)
... .....+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+. ..++|++|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 322 2223589999999999998764 345566789999999999987643222222 23799999999
Q ss_pred CccccCCC----CchhhcCCCccEEEecCccccccCchhhhc-----cccceEEEccCCcccc----cCCccccCCCcce
Q 035857 307 YNQLNSSI----PPELMNCSQLLNLVLSHNSLSGSIPSEIGN-----LIHLRQLDLSHNFING----TIPSQLGKITNVS 373 (404)
Q Consensus 307 ~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 373 (404)
+|.+++.. +..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++ .++..+..+++|+
T Consensus 322 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 401 (461)
T 1z7x_W 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401 (461)
T ss_dssp TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred CCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc
Confidence 99988653 345567899999999999998765555543 6799999999999986 6777888899999
Q ss_pred EEEccCCeeeee--------cCCcccccCcceeccCcC
Q 035857 374 EVDVSKNNLSGV--------IPKSVLRVPGLKWSENNL 403 (404)
Q Consensus 374 ~l~l~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 403 (404)
+|++++|+++.. +|.....++.|++.++.+
T Consensus 402 ~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 999999999865 344445677777655543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.4e-30 Score=232.27 Aligned_cols=294 Identities=23% Similarity=0.268 Sum_probs=145.9
Q ss_pred cccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEcc
Q 035857 35 NLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLD 114 (404)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 114 (404)
+++.++++++.++ ..|..+. ++|++|+++++.+....+..|..+++|++|++++|.+....+.+++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555554 3333322 455555555555554444455555555555555555554445555555555555555
Q ss_pred CcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccC--
Q 035857 115 NNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVG-- 192 (404)
Q Consensus 115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-- 192 (404)
+|.++.. +..+. ++|++|+++++.+....+..+ .++++|+.|+++++.+..
T Consensus 109 ~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~------------------------~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVF------------------------NGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHH------------------------TTCTTCCEEECCSSCCCGGG
T ss_pred CCcCCcc-Chhhc--ccccEEECCCCcccccCHhHh------------------------cCCccccEEECCCCcCCccC
Confidence 5544421 11111 344444444444443333333 344444444444443321
Q ss_pred cccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccC
Q 035857 193 PLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRN 272 (404)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 272 (404)
.....+..+++|+.|++++|.++. .+..+ .++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 223344455555555555555542 22221 256666666666665544555666666666666666666555555555
Q ss_pred CCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEE
Q 035857 273 LKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLD 352 (404)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 352 (404)
+++|++|++++|.+. .+|..+..+++|++|++++|.++...+..|.... .....+.++.++
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~ 299 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVS 299 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEE
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceE
Confidence 666666666666655 4455555566666666666666554443332210 001124455555
Q ss_pred ccCCcccc--cCCccccCCCcceEEEccCC
Q 035857 353 LSHNFING--TIPSQLGKITNVSEVDVSKN 380 (404)
Q Consensus 353 l~~~~~~~--~~~~~~~~~~~L~~l~l~~~ 380 (404)
+.+|++.. ..|..|..+++++.+++++|
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred eecCcccccccCccccccccceeEEEeccc
Confidence 55554432 34455555666666666655
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2e-30 Score=232.70 Aligned_cols=286 Identities=21% Similarity=0.271 Sum_probs=172.5
Q ss_pred CCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEec
Q 035857 83 NLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLN 162 (404)
Q Consensus 83 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 162 (404)
++++++++++.+. .+|..+. ++++.|+++++.++...+..+..+++|++|+++++.+....+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3444444444443 2232221 344555555554444333344455555555555555554444455555555555555
Q ss_pred CCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCC--
Q 035857 163 RNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDG-- 240 (404)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 240 (404)
+|++... +..+ .++|+ .|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 109 ~n~l~~l-~~~~--~~~L~------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLKEL-PEKM--PKTLQ------------------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCSBC-CSSC--CTTCC------------------------EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCCcc-Chhh--ccccc------------------------EEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 5554421 1111 13444 44444444443333334455555555555555432
Q ss_pred CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhc
Q 035857 241 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 320 (404)
Q Consensus 241 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 320 (404)
..+..+..+++|+.|++++|.++...... .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 33445666666777777666665433222 267788888888776556667778888888888888887766667888
Q ss_pred CCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccC------CCcceEEEccCCeeee--ecCCcccc
Q 035857 321 CSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK------ITNVSEVDVSKNNLSG--VIPKSVLR 392 (404)
Q Consensus 321 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~l~l~~~~~~~--~~~~~~~~ 392 (404)
+++|++|++++|.+. .+|..+..+++|++|++++|.++...+..|.. .+.++.+++++|++.. ..|..|..
T Consensus 239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 888999999998887 67777888899999999999988777777754 3789999999999864 44556665
Q ss_pred cCc---ceeccCc
Q 035857 393 VPG---LKWSENN 402 (404)
Q Consensus 393 ~~~---l~~~~~~ 402 (404)
+.+ +++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 554 5588874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.5e-30 Score=232.29 Aligned_cols=288 Identities=22% Similarity=0.259 Sum_probs=212.3
Q ss_pred cccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEcc
Q 035857 35 NLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLD 114 (404)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 114 (404)
+++.++++++.++ ..|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+.+++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6777787777776 4454442 577888888887776666677778888888888887776667777788888888888
Q ss_pred CcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCC--CCcccccccccceEEEeccccccC
Q 035857 115 NNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTG--PIPSTLYHLNQLRILYLAYNNLVG 192 (404)
Q Consensus 115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~ 192 (404)
+|.++.. +..+. ++|++|+++++.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|+++++.+..
T Consensus 111 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 8777633 32222 678888888888776666667778888888888887742 344455555 78888888877765
Q ss_pred cccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccC
Q 035857 193 PLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRN 272 (404)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 272 (404)
..... .++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|+++. .+..+..
T Consensus 187 l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPD 262 (332)
T ss_dssp CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGG
T ss_pred cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhc
Confidence 33222 2688888888888876666678888899999999998887767778888999999999998884 4555778
Q ss_pred CCcCcEEEccCCccCCCCCCcccC------CCCccEEEcCCcccc--CCCCchhhcCCCccEEEecCcc
Q 035857 273 LKYLASLSLNGNNLIGPIPPTIGY------LTNLTSLNLGYNQLN--SSIPPELMNCSQLLNLVLSHNS 333 (404)
Q Consensus 273 ~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 333 (404)
+++|+.|++++|.+.+..+..+.. .++++.|++++|.+. ...+..|..+++|+.+++++|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 899999999999887554444433 467899999999876 5667788889999999998874
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.5e-30 Score=228.47 Aligned_cols=294 Identities=21% Similarity=0.254 Sum_probs=172.9
Q ss_pred CCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEc
Q 035857 58 KDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFL 137 (404)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 137 (404)
.+++.++++++.+... +..+ .+++++|++++|.+....+.+|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4788888888877633 3333 267888888888887666667888888888888888887666777778888888888
Q ss_pred cCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccC--cccccccCccccCeEEeeccccC
Q 035857 138 AYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVG--PLSKEVGNLKNLDRLLLNRNNLT 215 (404)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 215 (404)
+++.+... +..+. ++|++|++++|++.......+..+++|+.|+++++.+.. .....+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 88877633 32222 677777777777765555556677777777777766542 333444444 6666666666655
Q ss_pred cccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCccc
Q 035857 216 GSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIG 295 (404)
Q Consensus 216 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 295 (404)
. .+..+ .++|++|++++|.+....+..+..+++|+.|++++|++....+..+..+++|++|++++|.+. .+|..+.
T Consensus 186 ~-l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 2 22221 245555666655555444445555555555555555555444444555555555555555544 3444444
Q ss_pred CCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc--ccCCccccCCCcce
Q 035857 296 YLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN--GTIPSQLGKITNVS 373 (404)
Q Consensus 296 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~ 373 (404)
.+++|++|++++|.++...+..|.... .-...++|+.+++.+|++. ...+..|..+++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred cCccCCEEECCCCCCCccChhHccccc------------------cccccccccceEeecCcccccccCcccccccchhh
Confidence 455555555555555443333332210 0001245566666666554 34555566666666
Q ss_pred EEEccCC
Q 035857 374 EVDVSKN 380 (404)
Q Consensus 374 ~l~l~~~ 380 (404)
.+++++|
T Consensus 324 ~l~l~~n 330 (332)
T 2ft3_A 324 AIQFGNY 330 (332)
T ss_dssp TEEC---
T ss_pred hhhcccc
Confidence 6666655
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.7e-29 Score=224.46 Aligned_cols=232 Identities=34% Similarity=0.554 Sum_probs=110.0
Q ss_pred cccEEEecCCCCCC--CCcccccccccceEEEecc-ccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEE
Q 035857 155 NLKTLLLNRNSLTG--PIPSTLYHLNQLRILYLAY-NNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDEL 231 (404)
Q Consensus 155 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 231 (404)
++++|+++++.+.. ..+..+.++++|+.|++++ +.+....+..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444433 2333444444444444442 33333334444444444444444444443334444444555555
Q ss_pred EccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCC-cCcEEEccCCccCCCCCCcccCCCCccEEEcCCccc
Q 035857 232 DLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLK-YLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQL 310 (404)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 310 (404)
++++|.+....+..+..+++|++|++++|.++...+..+..++ +|++|++++|.+....+..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 5555544444444444555555555555554434444444443 455555555554444444444443 55555555555
Q ss_pred cCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCC
Q 035857 311 NSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPK 388 (404)
Q Consensus 311 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 388 (404)
.+..+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|.
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 444444445555555555555555422222 44445555555555555544555555555555555555555555554
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.4e-29 Score=224.98 Aligned_cols=250 Identities=30% Similarity=0.466 Sum_probs=191.2
Q ss_pred CccEEEccCCcCCC--CCchhhcCCccccEEEecC-CCCCCCCcccccccccceEEEeccccccCcccccccCccccCeE
Q 035857 131 QLRVLFLAYNNLVG--PLPREVGNMKNLKTLLLNR-NSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRL 207 (404)
Q Consensus 131 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 207 (404)
+++.|+++++.+.. ..+..+..+++|++|++++ +.+....+..+.++++|+.|+++++.+....+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 55666666666654 4555666666666666663 55555555666667777777777776665556667777777777
Q ss_pred EeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCC-CcCEEEcCCCccccccCccccCCCcCcEEEccCCcc
Q 035857 208 LLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLT-NLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNL 286 (404)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 286 (404)
++++|.+....+..+..+++|++|++++|.+....+..+..++ .|+.|++++|.+....+..+..++ |+.|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777777656666777778888888888877656677777776 888888888888777777777766 88888888888
Q ss_pred CCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccc
Q 035857 287 IGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQL 366 (404)
Q Consensus 287 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 366 (404)
....+..+..+++|+.|++++|.+....+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 777777788888999999999888754443 677889999999999998888888999999999999999998888876
Q ss_pred cCCCcceEEEccCCeee
Q 035857 367 GKITNVSEVDVSKNNLS 383 (404)
Q Consensus 367 ~~~~~L~~l~l~~~~~~ 383 (404)
..+++|+.+++++|+..
T Consensus 288 ~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTGGGSCGGGTCSSSEE
T ss_pred ccccccChHHhcCCCCc
Confidence 78899999999999843
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6e-32 Score=262.19 Aligned_cols=364 Identities=13% Similarity=0.074 Sum_probs=193.9
Q ss_pred CCCcccEEeCCCccccCCCCcccCC-CCC-CcEEEeCCccc-ccc-CCCcccCCCCCcEEEccCccccCC----CccccC
Q 035857 32 SLRNLLKLDLTNNILNGSIPLEFGN-LKD-LDELRLQGNKL-DGL-IPSSIGNLTNLTSLNLSLNQLSGR----LPQEVG 103 (404)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l~~~~~-~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~ 103 (404)
.+++|++|+++++.+++..+..+.. +++ |++|++++|.. ... .......+++|++|++++|.+.+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4566666666666544322233332 223 66666655541 111 111223455666666665554322 112233
Q ss_pred CCCCCcEEEccCcccCC----CChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEe------------------
Q 035857 104 NLKNLDSLFLDNNNLTG----PIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLL------------------ 161 (404)
Q Consensus 104 ~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------------------ 161 (404)
.+++|+.|+++++.+.. .....+.++++|++|++.++.+.. .+..+..+++|++|.+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 45555555555555441 122223345555555555554442 2334444444554444
Q ss_pred ---------cCCCCCCCCcccccccccceEEEeccccccCccc-ccccCccccCeEEeeccccCcccCcccCCCCCCCEE
Q 035857 162 ---------NRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLS-KEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDEL 231 (404)
Q Consensus 162 ---------~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 231 (404)
.++... ..+..+..+++|+.|++++|.+..... ..+..+++|+.|++.++......+.....+++|++|
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 443221 233445566777777777766433222 234667777777777332222223333456777777
Q ss_pred EccC----------C-ccCCCC-hhhhccCCCcCEEEcCCCccccccCccccC-CCcCcEEEccC----CccCCC-----
Q 035857 232 DLSH----------N-RLDGPI-PPTIGNLTNLTSLDLSSNQLSGLLPREVRN-LKYLASLSLNG----NNLIGP----- 289 (404)
Q Consensus 232 ~l~~----------~-~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~----~~~~~~----- 289 (404)
++++ + .+.... ......+++|++|++..+.+++.....+.. +++|++|++++ +.+++.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 7773 2 222111 122345777888877666666544444443 67788888863 333321
Q ss_pred CCCcccCCCCccEEEcCCcc--ccCCCCchh-hcCCCccEEEecCcccccc-CchhhhccccceEEEccCCcccccC-Cc
Q 035857 290 IPPTIGYLTNLTSLNLGYNQ--LNSSIPPEL-MNCSQLLNLVLSHNSLSGS-IPSEIGNLIHLRQLDLSHNFINGTI-PS 364 (404)
Q Consensus 290 ~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 364 (404)
++..+..+++|++|+++.|. +++.....+ ..+++|+.|++++|.+.+. .+..+..|++|++|++++|.+++.. +.
T Consensus 428 ~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 428 VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 11224557888888887653 443333333 2477888888888877653 3334467788888888888865442 33
Q ss_pred cccCCCcceEEEccCCeeeeecCCcc-cccCcce
Q 035857 365 QLGKITNVSEVDVSKNNLSGVIPKSV-LRVPGLK 397 (404)
Q Consensus 365 ~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~ 397 (404)
....+++|++|++++|+++......+ ..++.++
T Consensus 508 ~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp HHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred HHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 34567888888888888776544433 3455554
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.1e-31 Score=260.27 Aligned_cols=378 Identities=14% Similarity=0.089 Sum_probs=240.5
Q ss_pred CcccccCCCcccEEeCCCcccc---CCCCcc------------cCCCCCCcEEEeCCccccccCCCcccC-CCC-CcEEE
Q 035857 26 IPAEIGSLRNLLKLDLTNNILN---GSIPLE------------FGNLKDLDELRLQGNKLDGLIPSSIGN-LTN-LTSLN 88 (404)
Q Consensus 26 ~~~~~~~~~~L~~L~l~~~~~~---~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~ 88 (404)
.+..+..+++|++|+++++... +..|.. ...+++|++|+++++.+.+.....+.. +++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3444567788888888775421 111211 227899999999999877554455554 444 99999
Q ss_pred ccCccc-cC-CCccccCCCCCCcEEEccCcccCCC----ChhhhhCCCCccEEEccCCcCCC----CCchhhcCCccccE
Q 035857 89 LSLNQL-SG-RLPQEVGNLKNLDSLFLDNNNLTGP----IPSTLYHLNQLRVLFLAYNNLVG----PLPREVGNMKNLKT 158 (404)
Q Consensus 89 l~~~~~-~~-~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 158 (404)
+++|.. .. .++.....+++|++|++++|.+.+. +......+++|++|+++++.+.. .....+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 998862 21 1222334789999999999987655 33355678999999999998863 23344567899999
Q ss_pred EEecCCCCCCCCcccccccccceEEEecccccc--------------------------CcccccccCccccCeEEeecc
Q 035857 159 LLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV--------------------------GPLSKEVGNLKNLDRLLLNRN 212 (404)
Q Consensus 159 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~~ 212 (404)
|++++|.+.. .+..+..+++|+.++++..... ...+..+..+++|++|++++|
T Consensus 225 L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 225 VKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp EECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred EeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 9999998764 4456677788888887642111 112223344556666666666
Q ss_pred ccCccc-CcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCC-----------CccccccC-ccccCCCcCcEE
Q 035857 213 NLTGSI-PSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSS-----------NQLSGLLP-REVRNLKYLASL 279 (404)
Q Consensus 213 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L 279 (404)
.+++.. ...+..+++|++|+++++-.....+.....+++|++|++++ +.++.... .....+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 543221 12235566666666663211112222335567777777773 33332211 223446778888
Q ss_pred EccCCccCCCCCCcccC-CCCccEEEcC----CccccCC-----CCchhhcCCCccEEEecCcc--ccccCchhhh-ccc
Q 035857 280 SLNGNNLIGPIPPTIGY-LTNLTSLNLG----YNQLNSS-----IPPELMNCSQLLNLVLSHNS--LSGSIPSEIG-NLI 346 (404)
Q Consensus 280 ~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~-~~~ 346 (404)
+++.+.+++.....+.. +++|++|+++ .+.+++. .+..+..+++|+.|+++.|. +.+.....+. .++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 87666665433333433 7888888886 3445432 12235678899999997654 5544444453 489
Q ss_pred cceEEEccCCccccc-CCccccCCCcceEEEccCCeeeeecC-Cc---ccccCcceeccCcCC
Q 035857 347 HLRQLDLSHNFINGT-IPSQLGKITNVSEVDVSKNNLSGVIP-KS---VLRVPGLKWSENNLE 404 (404)
Q Consensus 347 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~-~~---~~~~~~l~~~~~~~~ 404 (404)
+|+.|++++|.+++. .+..+.++++|+.|++++|+++.... .. +.+++.|++++|+++
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 999999999998763 34455789999999999999875533 22 445666669999864
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=214.08 Aligned_cols=276 Identities=18% Similarity=0.177 Sum_probs=180.3
Q ss_pred CCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEE
Q 035857 33 LRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLF 112 (404)
Q Consensus 33 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 112 (404)
|+.....+.+++.++ ..|..+. ++|++|+++++.+.......+.++++|++|++++|.+....+.+|+++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444445666666665 3444333 3677777777766655555666677777777777766655556666777777777
Q ss_pred ccCcccCCCChhhhhCCCCccEEEccCCcCCCCCc-hhhcCCccccEEEecCCC-CCCCCcccccccccceEEEeccccc
Q 035857 113 LDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLP-REVGNMKNLKTLLLNRNS-LTGPIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 113 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
+++|.++......+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|+.|+++++.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777665555556667777777777776664433 356667777777777763 4434445566777777777777776
Q ss_pred cCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhh---ccCCCcCEEEcCCCccccc--
Q 035857 191 VGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTI---GNLTNLTSLDLSSNQLSGL-- 265 (404)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~-- 265 (404)
....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.......+ ...+.++.+++.++.+.+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 66666667777777777777777653333333456777777777777664332222 3456677778877766542
Q ss_pred --cCccccCCCcCcEEEccCCccCCCCCCc-ccCCCCccEEEcCCccccC
Q 035857 266 --LPREVRNLKYLASLSLNGNNLIGPIPPT-IGYLTNLTSLNLGYNQLNS 312 (404)
Q Consensus 266 --~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 312 (404)
.+..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+..
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence 3455677888999999999887 44444 5788999999999998874
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=215.39 Aligned_cols=282 Identities=19% Similarity=0.196 Sum_probs=142.2
Q ss_pred CCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEE
Q 035857 56 NLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVL 135 (404)
Q Consensus 56 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 135 (404)
.|+.....+.+++.+... +..+. ++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 344445566666665533 32222 467777777776664444466667777777777666665555556666666666
Q ss_pred EccCCcCCCCCchhhcCCccccEEEecCCCCCCCCc-ccccccccceEEEecccc-ccCcccccccCccccCeEEeeccc
Q 035857 136 FLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIP-STLYHLNQLRILYLAYNN-LVGPLSKEVGNLKNLDRLLLNRNN 213 (404)
Q Consensus 136 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 213 (404)
++++|.+.......+.++++|++|++++|++..... ..+..+++|+.|++++|. +.......+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 666666665444445666666666666665553322 234445555555555442 332333334444444444444444
Q ss_pred cCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCc
Q 035857 214 LTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPT 293 (404)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 293 (404)
+. ...+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..
T Consensus 186 l~------------------------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 186 LQ------------------------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CC------------------------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cC------------------------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 43 333334444444444444444443332222333444555555544443221111
Q ss_pred ccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccc----cCchhhhccccceEEEccCCcccccCCccccCC
Q 035857 294 IGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSG----SIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI 369 (404)
Q Consensus 294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 369 (404)
+.. ....+.++.++++++.+.+ .++..+..+++|+.|++++|.++...+..|.++
T Consensus 242 l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l 300 (353)
T 2z80_A 242 LST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300 (353)
T ss_dssp --------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcC
Confidence 110 0112233344444443332 234455666666666666666664333335666
Q ss_pred CcceEEEccCCeeeee
Q 035857 370 TNVSEVDVSKNNLSGV 385 (404)
Q Consensus 370 ~~L~~l~l~~~~~~~~ 385 (404)
++|++|++++|+++..
T Consensus 301 ~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 301 TSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CCCCEEEeeCCCccCc
Confidence 6666666666666543
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.5e-27 Score=208.09 Aligned_cols=246 Identities=23% Similarity=0.255 Sum_probs=120.6
Q ss_pred EEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCC--cccccccccceEEEecc
Q 035857 110 SLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPI--PSTLYHLNQLRILYLAY 187 (404)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~ 187 (404)
.++++++.++.. +..+ .+++++|+++++.+.......+.++++|++|++++|.+.... +..+..+++|+.|++++
T Consensus 11 ~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 455555555422 2211 245666666666665444444556666666666666554211 22333445555555555
Q ss_pred ccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCCh-hhhccCCCcCEEEcCCCcccccc
Q 035857 188 NNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIP-PTIGNLTNLTSLDLSSNQLSGLL 266 (404)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~ 266 (404)
+.+... +..+..+++|+.|++++| .+....+ ..+..+++|++|++++|.+....
T Consensus 88 n~i~~l-~~~~~~l~~L~~L~l~~n------------------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 88 NGVITM-SSNFLGLEQLEHLDFQHS------------------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CSEEEE-EEEEETCTTCCEEECTTS------------------------EEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CccccC-hhhcCCCCCCCEEECCCC------------------------cccccccchhhhhccCCCEEECCCCcCCccc
Confidence 544321 222444444555555444 4433222 23444455555555555444444
Q ss_pred CccccCCCcCcEEEccCCccCC-CCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhcc
Q 035857 267 PREVRNLKYLASLSLNGNNLIG-PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNL 345 (404)
Q Consensus 267 ~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 345 (404)
+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 4444444555555555554442 234444455555555555555554444445555555555555555554444444555
Q ss_pred ccceEEEccCCcccccCCccccCCC-cceEEEccCCeee
Q 035857 346 IHLRQLDLSHNFINGTIPSQLGKIT-NVSEVDVSKNNLS 383 (404)
Q Consensus 346 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~ 383 (404)
++|+.|++++|.+.+..+..+..++ +|++|++++|+++
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5555555555555555555555542 5555555555554
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=5.7e-30 Score=248.43 Aligned_cols=389 Identities=15% Similarity=0.104 Sum_probs=245.8
Q ss_pred ccCCCCccEEEcCCCcccccC---------------cccccCCCcccEEeCCCccccCCCCcccC-CCCCCcEEEeCCc-
Q 035857 6 IGALSKLEELDLSYNSLTGTI---------------PAEIGSLRNLLKLDLTNNILNGSIPLEFG-NLKDLDELRLQGN- 68 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~- 68 (404)
+.++++|++|+++++...... +..+..+++|++|+++++.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 556788888888886532111 11234678888888888877654444443 5788888888888
Q ss_pred ccccc-CCCcccCCCCCcEEEccCccccCCCcccc----CCCCCCcEEEccCcc--cCC-CChhhhhCCCCccEEEccCC
Q 035857 69 KLDGL-IPSSIGNLTNLTSLNLSLNQLSGRLPQEV----GNLKNLDSLFLDNNN--LTG-PIPSTLYHLNQLRVLFLAYN 140 (404)
Q Consensus 69 ~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~ 140 (404)
.+... ....+..+++|++|++++|.+.+..+..+ ..+++|+.|+++++. +.. .+......+++|++|++.++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 34322 23334468888888888887664443333 366788888888875 211 11122345688888888877
Q ss_pred cCCCCCchhhcCCccccEEEecCCCC--------------------------CC----CCcccccccccceEEEeccccc
Q 035857 141 NLVGPLPREVGNMKNLKTLLLNRNSL--------------------------TG----PIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 141 ~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------~~----~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
......+..+..+++|++|.+..+.. .. ..+..+..+++|+.|+++++.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 32222445555667777776554421 11 1122223568888888888875
Q ss_pred cCcc-cccccCccccCeEEeeccccCc-ccCcccCCCCCCCEEEccCC---------ccCCCChhhh-ccCCCcCEEEcC
Q 035857 191 VGPL-SKEVGNLKNLDRLLLNRNNLTG-SIPSTIGYLNLLDELDLSHN---------RLDGPIPPTI-GNLTNLTSLDLS 258 (404)
Q Consensus 191 ~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~l-~~~~~L~~L~l~ 258 (404)
.... ...+..+++|+.|++.+| +.+ ........+++|++|++.++ .+.......+ ..+++|++|.+.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 4322 223457888999988887 332 22223345788899988442 2222112222 357889999887
Q ss_pred CCccccccCcccc-CCCcCcEEEcc--C----CccCCCCC------CcccCCCCccEEEcCCccccCCCCchhhc-CCCc
Q 035857 259 SNQLSGLLPREVR-NLKYLASLSLN--G----NNLIGPIP------PTIGYLTNLTSLNLGYNQLNSSIPPELMN-CSQL 324 (404)
Q Consensus 259 ~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L 324 (404)
.+.+++.....+. .+++|+.|+++ + +.++ ..+ ..+..+++|++|++++ .+++.....+.. +++|
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 7777655444443 47899999998 3 2332 211 1255678999999977 555444444444 7889
Q ss_pred cEEEecCccccccCchhh-hccccceEEEccCCcccccCCc-cccCCCcceEEEccCCeeeeecCCcc-cccCcce
Q 035857 325 LNLVLSHNSLSGSIPSEI-GNLIHLRQLDLSHNFINGTIPS-QLGKITNVSEVDVSKNNLSGVIPKSV-LRVPGLK 397 (404)
Q Consensus 325 ~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~ 397 (404)
+.|++++|.+.+.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+++....+.+ ..++.++
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 999999998876555555 6689999999999988654443 33558899999999998865444444 4556654
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=5.8e-27 Score=207.92 Aligned_cols=247 Identities=26% Similarity=0.303 Sum_probs=122.8
Q ss_pred cEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCC--hhhhhCCCCccEEEcc
Q 035857 61 DELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPI--PSTLYHLNQLRVLFLA 138 (404)
Q Consensus 61 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~ 138 (404)
+.++++++.+... +..+ .++|++|+++++.+....+..|+++++|+.|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3555555555432 2222 245666666666665333334566666666666666554211 2333445555555555
Q ss_pred CCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCccc-ccccCccccCeEEeeccccCcc
Q 035857 139 YNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLS-KEVGNLKNLDRLLLNRNNLTGS 217 (404)
Q Consensus 139 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 217 (404)
++.+.. .+.. +..+++|+.|+++++.+..... ..+..+++|++|++++|.+...
T Consensus 87 ~n~i~~-l~~~------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVIT-MSSN------------------------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEEE-EEEE------------------------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCcccc-Chhh------------------------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence 554442 2233 4444555555555444433322 3344455555555555554433
Q ss_pred cCcccCCCCCCCEEEccCCccCC-CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccC
Q 035857 218 IPSTIGYLNLLDELDLSHNRLDG-PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGY 296 (404)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 296 (404)
.+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 34444455555555555555442 23344455555555555555555444444555555555555555554333334445
Q ss_pred CCCccEEEcCCccccCCCCchhhcCC-CccEEEecCcccc
Q 035857 297 LTNLTSLNLGYNQLNSSIPPELMNCS-QLLNLVLSHNSLS 335 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 335 (404)
+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555555555555554444444442 5555555555554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=213.80 Aligned_cols=227 Identities=25% Similarity=0.275 Sum_probs=126.0
Q ss_pred cccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEcc
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLS 234 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (404)
+++.|++++|.+.......|.++++|+.|++++|.+.......|..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 34444444444443333344444444444444444444444444455555555555555543333344555555555555
Q ss_pred CCccCCCChhhhccCCCcCEEEcCCC-ccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCC
Q 035857 235 HNRLDGPIPPTIGNLTNLTSLDLSSN-QLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSS 313 (404)
Q Consensus 235 ~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 313 (404)
+|.+....+..+..+++|+.|+++++ .+.......+.++++|++|++++|.+. .++ .+..+++|+.|++++|.+.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 55554444444555555666665553 233333444555666666666666654 333 355566666666666666655
Q ss_pred CCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 314 IPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 314 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
.+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5666666666666666666666555666666666666666666666555566666666666666666653
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.3e-26 Score=214.10 Aligned_cols=228 Identities=23% Similarity=0.249 Sum_probs=145.9
Q ss_pred ccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEc
Q 035857 154 KNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDL 233 (404)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 233 (404)
+++++|++++|.+....+..|.++++|+.|++++|.+.......|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555554444444555555555555555555444455555666666666666655444444556666666666
Q ss_pred cCCccCCCChhhhccCCCcCEEEcCCC-ccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccC
Q 035857 234 SHNRLDGPIPPTIGNLTNLTSLDLSSN-QLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNS 312 (404)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 312 (404)
++|.+....+..+..+++|+.|+++++ .+.......+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 666665444455666666666666663 3444444456666777777777776653 33 35667777777777777776
Q ss_pred CCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 313 SIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|++++|++.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66677777777777777777777666677777777777777777777666666777777777777777764
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.2e-27 Score=204.43 Aligned_cols=137 Identities=30% Similarity=0.273 Sum_probs=58.7
Q ss_pred cCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcE
Q 035857 199 GNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLAS 278 (404)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 278 (404)
..+++|+.|++++|.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence 33334444444444333222333344444444444444444333333444444444444444444333333444444444
Q ss_pred EEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccc
Q 035857 279 LSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 279 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 335 (404)
|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444444444333444444444444444444444333333444444444444444443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.2e-26 Score=201.01 Aligned_cols=255 Identities=22% Similarity=0.211 Sum_probs=196.2
Q ss_pred cEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeecc
Q 035857 133 RVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRN 212 (404)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (404)
+.+++++..++.. +.. ..++|++|+++++.+....+..+..+++|+.|+++++.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4566666555532 222 2357777777777776555556777788888888877777666677888888888888888
Q ss_pred c-cCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCC
Q 035857 213 N-LTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIP 291 (404)
Q Consensus 213 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (404)
. +....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 6 665556778888999999999999887777888889999999999999887777778888999999999998875555
Q ss_pred CcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCc
Q 035857 292 PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITN 371 (404)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 371 (404)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++....+.. .-...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 56888899999999999988877888888999999999999998766677888999999999999886332211 11235
Q ss_pred ceEEEccCCeeeeecCCccc
Q 035857 372 VSEVDVSKNNLSGVIPKSVL 391 (404)
Q Consensus 372 L~~l~l~~~~~~~~~~~~~~ 391 (404)
++.+..+.+.+....|..+.
T Consensus 250 l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHCCSEECCCBEEESGGGT
T ss_pred HHhcccccCccccCCchHhC
Confidence 66666777777777776544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=210.07 Aligned_cols=245 Identities=22% Similarity=0.195 Sum_probs=135.7
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
..++.++..+. .+|..+ .+++++|+++++.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 44555555544 233322 145666666666665555556666666666666666665555555666666666666666
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCC-cCCCCCchhhcCCccccEEEecCCCCCCCCc
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYN-NLVGPLPREVGNMKNLKTLLLNRNSLTGPIP 171 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 171 (404)
.+....+..|..+++|++|++++|.+.......|..+++|++|+++++ .+.......+.++++|++|++++|.+...
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence 665444445566666666666666655444445556666666666552 33323333455566666666666655532
Q ss_pred ccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCC
Q 035857 172 STLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTN 251 (404)
Q Consensus 172 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 251 (404)
..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 23455555666666555555555555555555555555555555444444555555555555555555444444555555
Q ss_pred cCEEEcCCCcc
Q 035857 252 LTSLDLSSNQL 262 (404)
Q Consensus 252 L~~L~l~~~~~ 262 (404)
|+.|++++|.+
T Consensus 292 L~~L~L~~Np~ 302 (452)
T 3zyi_A 292 LVELHLHHNPW 302 (452)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEccCCCc
Confidence 55555555543
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.1e-26 Score=202.30 Aligned_cols=235 Identities=23% Similarity=0.287 Sum_probs=140.9
Q ss_pred CCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEE
Q 035857 129 LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLL 208 (404)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 208 (404)
.+.++.|+++++.+. .++..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+. ..+..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 356667777766666 44455566666777777666666 44555666666666666666655 3344556666666666
Q ss_pred eeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCC
Q 035857 209 LNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIG 288 (404)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (404)
+++|......+..+.. . .....+.++++|++|++++|.++ ..+..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred CCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 6665544333332221 0 00011334566666666666555 33444555666666666666665
Q ss_pred CCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccC
Q 035857 289 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGK 368 (404)
Q Consensus 289 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 368 (404)
.++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.+
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 34445666666666666666666666666666666777777766666666666666777777777777666667777777
Q ss_pred CCcceEEEccCCeee
Q 035857 369 ITNVSEVDVSKNNLS 383 (404)
Q Consensus 369 ~~~L~~l~l~~~~~~ 383 (404)
+++|+.+++..+.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 777777766655443
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=208.57 Aligned_cols=245 Identities=24% Similarity=0.241 Sum_probs=121.6
Q ss_pred cEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCc
Q 035857 37 LKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNN 116 (404)
Q Consensus 37 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 116 (404)
+.++..+..++ ..|..+. +++++|++++|.+....+..|.++++|++|++++|.+....+.+|.++++|+.|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 34444444443 2333322 34555555555554444444555555555555555554444444555555555555555
Q ss_pred ccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCC-CCCCCCcccccccccceEEEeccccccCccc
Q 035857 117 NLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRN-SLTGPIPSTLYHLNQLRILYLAYNNLVGPLS 195 (404)
Q Consensus 117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 195 (404)
.++......|..+++|++|++++|.+.......|..+++|++|+++++ .+.......+.++++|+.|++++|.+....
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP- 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-
Confidence 554443344445555555555555554444444455555555555543 222222223445555555555555444321
Q ss_pred ccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCc
Q 035857 196 KEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKY 275 (404)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 275 (404)
.+..+++|+.|++++|.++...+..+..+++|++|++++|.+....+.++..+++|+.|++++|+++......+..+++
T Consensus 202 -~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 -NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp -CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred -ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 2445555555555555555444445555555555555555555444445555555555555555555555555555555
Q ss_pred CcEEEccCCcc
Q 035857 276 LASLSLNGNNL 286 (404)
Q Consensus 276 L~~L~l~~~~~ 286 (404)
|+.|++++|.+
T Consensus 281 L~~L~L~~Np~ 291 (440)
T 3zyj_A 281 LERIHLHHNPW 291 (440)
T ss_dssp CCEEECCSSCE
T ss_pred CCEEEcCCCCc
Confidence 55555555543
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.4e-25 Score=197.17 Aligned_cols=235 Identities=25% Similarity=0.314 Sum_probs=163.0
Q ss_pred CCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEE
Q 035857 104 NLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRIL 183 (404)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 183 (404)
..+.++.|+++++.+. .++..+..+++|++|+++++.+. ..+..++.+++|++|++++|.+. ..+..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3478999999999998 56667888999999999999999 77788999999999999999998 567789999999999
Q ss_pred EeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccc
Q 035857 184 YLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLS 263 (404)
Q Consensus 184 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 263 (404)
++++|......+..+... .....+..+++|++|++++|.+. ..+..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 999987665555443320 01122344555555555555555 44445555566666666666555
Q ss_pred cccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhh
Q 035857 264 GLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIG 343 (404)
Q Consensus 264 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 343 (404)
.. +..+..+++|++|++++|.+...++..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+.
T Consensus 220 ~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 AL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred cC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 32 23455566666666666665555666666666666666666666666666666666777777777666666666666
Q ss_pred ccccceEEEccCCcc
Q 035857 344 NLIHLRQLDLSHNFI 358 (404)
Q Consensus 344 ~~~~L~~L~l~~~~~ 358 (404)
.+++|+.+.+..+.+
T Consensus 299 ~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 299 QLPANCIILVPPHLQ 313 (328)
T ss_dssp GSCTTCEEECCGGGS
T ss_pred hccCceEEeCCHHHH
Confidence 677777666655433
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.8e-29 Score=240.07 Aligned_cols=374 Identities=21% Similarity=0.167 Sum_probs=251.8
Q ss_pred ccCCCCccEEEcCCCcccccCccccc-CCCcccEEeCCCc-cccCC-CCcccCCCCCCcEEEeCCccccccCCCcc----
Q 035857 6 IGALSKLEELDLSYNSLTGTIPAEIG-SLRNLLKLDLTNN-ILNGS-IPLEFGNLKDLDELRLQGNKLDGLIPSSI---- 78 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---- 78 (404)
+.++++|++|+++++.+.+..+..+. .+++|++|++.+| .++.. .+..+..+++|++|++++|.+.+.....+
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 35788999999999988876666664 6899999999988 44321 23334578999999999988764433333
Q ss_pred cCCCCCcEEEccCcc--ccC-CCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCc--------------
Q 035857 79 GNLTNLTSLNLSLNQ--LSG-RLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNN-------------- 141 (404)
Q Consensus 79 ~~l~~L~~L~l~~~~--~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------- 141 (404)
..+++|++|+++++. +.. .+......+++|+.|++++|......+..+..+++|++|++..+.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 367799999999886 211 111223457899999998873222345556677777777754431
Q ss_pred ------------CCC----CCchhhcCCccccEEEecCCCCCCCC-cccccccccceEEEeccccccCc-ccccccCccc
Q 035857 142 ------------LVG----PLPREVGNMKNLKTLLLNRNSLTGPI-PSTLYHLNQLRILYLAYNNLVGP-LSKEVGNLKN 203 (404)
Q Consensus 142 ------------~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~ 203 (404)
+.. ..+..+..+++|++|++++|.+.... ...+..+++|+.|+++++ +... .......+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 111 12222235789999999999865321 222457899999999987 3322 2222345899
Q ss_pred cCeEEeec---------cccCcccCccc-CCCCCCCEEEccCCccCCCChhhhc-cCCCcCEEEcC--C----Cccccc-
Q 035857 204 LDRLLLNR---------NNLTGSIPSTI-GYLNLLDELDLSHNRLDGPIPPTIG-NLTNLTSLDLS--S----NQLSGL- 265 (404)
Q Consensus 204 L~~L~l~~---------~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~- 265 (404)
|+.|++.+ +.+++.....+ ..+++|++|.+..+.+.......+. .+++|+.|+++ + +.++..
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 99999954 23432222222 3489999998887777644444443 68999999998 3 344422
Q ss_pred ----cCccccCCCcCcEEEccCCccCCCCCCccc-CCCCccEEEcCCccccCCCCchh-hcCCCccEEEecCccccccCc
Q 035857 266 ----LPREVRNLKYLASLSLNGNNLIGPIPPTIG-YLTNLTSLNLGYNQLNSSIPPEL-MNCSQLLNLVLSHNSLSGSIP 339 (404)
Q Consensus 266 ----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~ 339 (404)
....+..+++|+.|++++ .+.+.....+. .+++|+.|++++|.+++.....+ ..+++|+.|++++|.+.+...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 122356789999999987 44433333333 38999999999999876555444 678999999999999965444
Q ss_pred h-hhhccccceEEEccCCcccccCCccc-cCCCcceEEEccCCe
Q 035857 340 S-EIGNLIHLRQLDLSHNFINGTIPSQL-GKITNVSEVDVSKNN 381 (404)
Q Consensus 340 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~ 381 (404)
. ....+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 4 34568999999999999865544555 567888776666554
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=8.2e-27 Score=207.73 Aligned_cols=254 Identities=22% Similarity=0.197 Sum_probs=119.8
Q ss_pred EEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCC
Q 035857 87 LNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSL 166 (404)
Q Consensus 87 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 166 (404)
.+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444432223333445556666666665555544555555666666665555543221 45555555555555544
Q ss_pred CCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhh
Q 035857 167 TGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTI 246 (404)
Q Consensus 167 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 246 (404)
.. +...++|+.|++++|.+...... .+++|++|++++|.+....+..+
T Consensus 93 ~~-----l~~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~~~~~~~~ 140 (317)
T 3o53_A 93 QE-----LLVGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDE 140 (317)
T ss_dssp EE-----EEECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCT
T ss_pred cc-----ccCCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCCCccchhh
Confidence 31 11224444555544444332211 23445555555554443333344
Q ss_pred ccCCCcCEEEcCCCccccccCccc-cCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCcc
Q 035857 247 GNLTNLTSLDLSSNQLSGLLPREV-RNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLL 325 (404)
Q Consensus 247 ~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 325 (404)
..+++|+.|++++|.+....+..+ ..+++|++|++++|.+... +. ...+++|++|++++|.+.... ..+..+++|+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~ 217 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVT 217 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCS
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcch-hhhcccCccc
Confidence 444555555555555444333332 2345555555555554322 11 112455555555555554322 2244555555
Q ss_pred EEEecCccccccCchhhhccccceEEEccCCccc-ccCCccccCCCcceEEEcc
Q 035857 326 NLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQLGKITNVSEVDVS 378 (404)
Q Consensus 326 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~ 378 (404)
.|++++|.+. .++..+..+++|+.|++++|++. +..+..+..+++|+.++++
T Consensus 218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred EEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555555554 23444455555555555555554 3444444555555555555
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=205.23 Aligned_cols=259 Identities=21% Similarity=0.205 Sum_probs=149.4
Q ss_pred CCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEc
Q 035857 10 SKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNL 89 (404)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 89 (404)
..++..+++++.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 346666777777766666666777788888888888886666778888888888888888764432 777788888888
Q ss_pred cCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCC
Q 035857 90 SLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGP 169 (404)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 169 (404)
++|.+. .++ ..++|+.|++++|.+...... .+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus 88 s~n~l~-~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQ-ELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEE-EEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCccc-ccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888765 222 236777777777766643222 345566666666666655444555566666666666655543
Q ss_pred Ccccc-cccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhcc
Q 035857 170 IPSTL-YHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGN 248 (404)
Q Consensus 170 ~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 248 (404)
.+..+ ..+++|+.|++++|.+.... ....+++|+.|++++|.++. .+..+..+++|+.|++++|.+. ..+..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 33333 24455555555555544331 11234455555555555442 2222444455555555555444 23333444
Q ss_pred CCCcCEEEcCCCccc-cccCccccCCCcCcEEEcc
Q 035857 249 LTNLTSLDLSSNQLS-GLLPREVRNLKYLASLSLN 282 (404)
Q Consensus 249 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 282 (404)
+++|+.|++++|.+. +..+.++..+++|+.+++.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 445555555555444 3333344444444444444
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1e-23 Score=202.31 Aligned_cols=266 Identities=26% Similarity=0.266 Sum_probs=154.7
Q ss_pred CCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEc
Q 035857 58 KDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFL 137 (404)
Q Consensus 58 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 137 (404)
.+++.|+++++.+.. ++..+. ++|++|++++|.+. .+|. .+++|++|++++|.++.. +. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 357888888887773 344333 67888888888776 4444 467788888888777632 22 5677777777
Q ss_pred cCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcc
Q 035857 138 AYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGS 217 (404)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (404)
++|.+.... . .+++|++|++++|++... +. .+++|+.|++++|.+.... ..+++|+.|++++|.++.
T Consensus 109 s~N~l~~l~-~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHLP-A---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCCC-C---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCCC-C---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCCC-
Confidence 777766432 2 456777777777766632 22 2366667777666655322 124556666666666652
Q ss_pred cCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCC
Q 035857 218 IPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYL 297 (404)
Q Consensus 218 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 297 (404)
++ ..+++|+.|++++|.+.. ++. ..++|+.|++++|.++.... .+++|+.|++++|.+.. ++ ..+
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCc-CC---CCC
Confidence 22 334566666666666553 221 23566666666666553321 23556666666665542 33 334
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCcccc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLG 367 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 367 (404)
++|+.|++++|.+... +. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+.
T Consensus 241 ~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 5666666666655532 22 3455666666666655 4455556666666666666665555444443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.8e-23 Score=195.55 Aligned_cols=267 Identities=27% Similarity=0.287 Sum_probs=175.6
Q ss_pred cccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEcc
Q 035857 35 NLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLD 114 (404)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 114 (404)
+++.|+++++.++ .+|..+. ++|++|++++|.+... +. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4666666666665 3444333 5666666666665532 22 3466666666666665 3333 45666666666
Q ss_pred CcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcc
Q 035857 115 NNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPL 194 (404)
Q Consensus 115 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 194 (404)
+|.++... . .+++|+.|++++|.+... +. .+++|++|++++|.+... +. .+++|+.|++++|.+....
T Consensus 110 ~N~l~~l~-~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHLP-A---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCCC-C---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCCCC-C---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc
Confidence 66665322 2 445667777776666532 22 236777777777766632 21 3456777777777766533
Q ss_pred cccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCC
Q 035857 195 SKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLK 274 (404)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 274 (404)
..+++|+.|++++|.++. ++. ..++|+.|++++|.+.. .+. .+++|+.|++++|+++.+. ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred ----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----CCCC
Confidence 446778888888887763 222 24678888888887763 332 2478888888888887543 4568
Q ss_pred cCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhcc
Q 035857 275 YLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNL 345 (404)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 345 (404)
+|+.|++++|.+. .++. .+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 8899999998886 4454 5688999999999888 557778888999999999998887766666543
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.2e-25 Score=199.82 Aligned_cols=202 Identities=23% Similarity=0.239 Sum_probs=114.4
Q ss_pred cccceEEEeccccccCcccccc--cCccccCeEEeeccccCcccCcccCCC-----CCCCEEEccCCccCCCChhhhccC
Q 035857 177 LNQLRILYLAYNNLVGPLSKEV--GNLKNLDRLLLNRNNLTGSIPSTIGYL-----NLLDELDLSHNRLDGPIPPTIGNL 249 (404)
Q Consensus 177 ~~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~ 249 (404)
+++|+.|+++++.+....+..+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|.+....+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4455555555555443333332 4555555555555555433 3333333 556666666666655444555666
Q ss_pred CCcCEEEcCCCccccc--cCcc--ccCCCcCcEEEccCCccCCC---CCCcccCCCCccEEEcCCccccCCCC-chhhcC
Q 035857 250 TNLTSLDLSSNQLSGL--LPRE--VRNLKYLASLSLNGNNLIGP---IPPTIGYLTNLTSLNLGYNQLNSSIP-PELMNC 321 (404)
Q Consensus 250 ~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~ 321 (404)
++|++|++++|++.+. .+.. +..+++|++|++++|.+... ....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 6666666666654322 1111 24556666666666665421 11223355667777777776665443 334456
Q ss_pred CCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 322 SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
++|++|++++|.+. .+|..+. ++|+.|++++|.+++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 67777777777776 4555444 6777777777777754 44 7777777788877777764
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.8e-25 Score=195.85 Aligned_cols=253 Identities=23% Similarity=0.245 Sum_probs=136.9
Q ss_pred cCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCC-CChhhhh-------CCCCccEEEccCCcCCCCCchhh
Q 035857 79 GNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTG-PIPSTLY-------HLNQLRVLFLAYNNLVGPLPREV 150 (404)
Q Consensus 79 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~ 150 (404)
...++|++++++++.+ ..|..+... |+.|+++++.+.. ..+..+. .+++|++|+++++.+....+..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666666666666 344433322 5566666555531 1222222 45566666666666554444443
Q ss_pred --cCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCC
Q 035857 151 --GNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLL 228 (404)
Q Consensus 151 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 228 (404)
..+++|++|++++|++... +..+..++. ..+++|++|++++|.+....+..+..+++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~-------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQ-------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHT-------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHH-------------------hhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4555555665555555533 333333300 001455555555555544444445555555
Q ss_pred CEEEccCCccCCC--Chhhh--ccCCCcCEEEcCCCcccc---ccCccccCCCcCcEEEccCCccCCCCC-CcccCCCCc
Q 035857 229 DELDLSHNRLDGP--IPPTI--GNLTNLTSLDLSSNQLSG---LLPREVRNLKYLASLSLNGNNLIGPIP-PTIGYLTNL 300 (404)
Q Consensus 229 ~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 300 (404)
++|++++|++... .+..+ ..+++|++|++++|+++. .....+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 5555555554321 11122 455666666666666552 222333455667777777666654442 344456777
Q ss_pred cEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccc
Q 035857 301 TSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 301 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
++|++++|.++ ..+..+. ++|+.|++++|.+.+. |. +..+++|++|++++|++++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 77777777776 3444433 6777777777777644 44 6777778888888777764
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.9e-23 Score=180.41 Aligned_cols=206 Identities=23% Similarity=0.227 Sum_probs=151.2
Q ss_pred cceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcC
Q 035857 179 QLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLS 258 (404)
Q Consensus 179 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 258 (404)
+++.|+++++.+.......+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666655555556666777777777776664445556677777777777777765555667777788888888
Q ss_pred CCccccccCccccCCCcCcEEEccCCccCCC-CCCcccCCCCccEEEcCCccccCCCCchhhcCCCcc----EEEecCcc
Q 035857 259 SNQLSGLLPREVRNLKYLASLSLNGNNLIGP-IPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLL----NLVLSHNS 333 (404)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~ 333 (404)
+|.+.......+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|+ .+++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777766666677778888888888887653 567788888888888888888776666677666666 88888988
Q ss_pred ccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeee
Q 035857 334 LSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGV 385 (404)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 385 (404)
+....+..+. ..+|+.|++++|.+++..+..|..+++|++|++++|+++..
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 8854444443 45899999999988877777788889999999999988743
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=176.03 Aligned_cols=202 Identities=30% Similarity=0.295 Sum_probs=118.8
Q ss_pred cccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEcc
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLS 234 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (404)
..++++++++.+.. .+..+ .++++.|+++++.+.......+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45677777766663 22222 2456677777666665555566666666666666666654444445556666666666
Q ss_pred CCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCC
Q 035857 235 HNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 314 (404)
Q Consensus 235 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (404)
+|.+....+..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66665544455566666666666666666555555556666666666666655433334555666666666666665544
Q ss_pred CchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 315 PPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 315 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 445555566666666666555444444555566666666665544
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.2e-23 Score=179.61 Aligned_cols=222 Identities=23% Similarity=0.222 Sum_probs=154.6
Q ss_pred EEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCcc
Q 035857 14 ELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQ 93 (404)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 93 (404)
+++..+.++. .+|..+. ++|++|+++++.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3444444444 3444332 467777777777775555567777777777777777776666667777777777777777
Q ss_pred ccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCC-CchhhcCCccccEEEecCCCCCCCCcc
Q 035857 94 LSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGP-LPREVGNMKNLKTLLLNRNSLTGPIPS 172 (404)
Q Consensus 94 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 172 (404)
+....+..+.++++|+.|++++|.+.......+..+++|++|+++++.+... .+..+..+++|++|++++|++......
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 7655556777777777777777777655554567777788888887777653 366777778888888888877755555
Q ss_pred cccccccce----EEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccC
Q 035857 173 TLYHLNQLR----ILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLD 239 (404)
Q Consensus 173 ~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (404)
.+..+++|+ .++++++.+.......+.. .+|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 566666655 7788887776554444433 37888888888887555556677888888888888776
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-24 Score=203.84 Aligned_cols=236 Identities=22% Similarity=0.193 Sum_probs=163.1
Q ss_pred CCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEE
Q 035857 129 LNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLL 208 (404)
Q Consensus 129 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 208 (404)
+++|++|+++++.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.... ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888887777788888888888888887764332 777788888888887765432 237788888
Q ss_pred eeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCcccc-CCCcCcEEEccCCccC
Q 035857 209 LNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVR-NLKYLASLSLNGNNLI 287 (404)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 287 (404)
+++|.++...+. .+++|+.|++++|.+....+..+..+++|+.|++++|.++...+..+. .+++|+.|++++|.+.
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888777643322 356777788877777765566677777777777777777765555554 5677777777777766
Q ss_pred CCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc-ccCCccc
Q 035857 288 GPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN-GTIPSQL 366 (404)
Q Consensus 288 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~ 366 (404)
+. + ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +..|..+
T Consensus 183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 33 2 22346777777777777765333 3666777777777777776 35556666777777777777765 4555666
Q ss_pred cCCCcceEEEcc
Q 035857 367 GKITNVSEVDVS 378 (404)
Q Consensus 367 ~~~~~L~~l~l~ 378 (404)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 667777766665
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.9e-24 Score=203.36 Aligned_cols=238 Identities=22% Similarity=0.212 Sum_probs=176.6
Q ss_pred cCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 31 GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
..+++|++|++++|.+++..+..|..+++|++|++++|.+....+ +..+++|++|++++|.+.. ++ ..++|+.
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCE
Confidence 344578888888888876666778888888888888887764433 7778888888888887762 22 2377888
Q ss_pred EEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCccccc-ccccceEEEecccc
Q 035857 111 LFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLY-HLNQLRILYLAYNN 189 (404)
Q Consensus 111 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~ 189 (404)
|++++|.+...... .+++|+.|++++|.+....+..++.+++|++|++++|.+....+..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888877754332 457788888888888877677777888888888888887765555554 67888888888888
Q ss_pred ccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccc-cccCc
Q 035857 190 LVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLS-GLLPR 268 (404)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 268 (404)
+.... ....+++|+.|++++|.++. .+..+..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+. ...+.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 76552 23458888899998888874 3444777888999999998887 35666778889999999998876 44556
Q ss_pred cccCCCcCcEEEcc
Q 035857 269 EVRNLKYLASLSLN 282 (404)
Q Consensus 269 ~~~~~~~L~~L~l~ 282 (404)
++..++.|+.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 66777778777775
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-22 Score=175.88 Aligned_cols=202 Identities=24% Similarity=0.267 Sum_probs=176.4
Q ss_pred cceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcC
Q 035857 179 QLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLS 258 (404)
Q Consensus 179 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 258 (404)
..+.++++++.++.... .+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 56789998888775432 22 3689999999999986666678899999999999999987666777899999999999
Q ss_pred CCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccC
Q 035857 259 SNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSI 338 (404)
Q Consensus 259 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 338 (404)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99999888888889999999999999998776777889999999999999998777777889999999999999999777
Q ss_pred chhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 339 PSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 339 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 777899999999999999999777778999999999999999986
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.2e-23 Score=182.94 Aligned_cols=210 Identities=28% Similarity=0.257 Sum_probs=128.7
Q ss_pred cccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCE
Q 035857 175 YHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTS 254 (404)
Q Consensus 175 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 254 (404)
..+++|+.++++++.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555444322 2244555555555555555421 24555666666666666666555555566666666
Q ss_pred EEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccc
Q 035857 255 LDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSL 334 (404)
Q Consensus 255 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 334 (404)
|++++|+++...+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666666655555566666677777776666644444556667777777777766655555566667777777777777
Q ss_pred cccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCc
Q 035857 335 SGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPG 395 (404)
Q Consensus 335 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 395 (404)
.+..+..+..+++|+.|++++|++. +.+++|+.+++.+|.+++.+|..+.++..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 6555555666777777777777654 23556777777777777777766655543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.6e-22 Score=174.53 Aligned_cols=209 Identities=26% Similarity=0.269 Sum_probs=127.8
Q ss_pred CCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEE
Q 035857 152 NMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDEL 231 (404)
Q Consensus 152 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 231 (404)
.+++|+.|+++++.+... ..+..+++|+.|+++++.+... ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 344555555555544421 2244455555555555554432 244555666666666666554444445566666666
Q ss_pred EccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCcccc
Q 035857 232 DLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (404)
++++|.+....+..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666666555555666667777777776666555555666677777777777666444445566777777777777776
Q ss_pred CCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCc
Q 035857 312 SSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITN 371 (404)
Q Consensus 312 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 371 (404)
+..+..+..+++|+.|++++|.+. +.|++|+.+++..|.+++.+|..++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 665556667777777777777665 33556777777777777777766665544
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.2e-22 Score=171.66 Aligned_cols=197 Identities=16% Similarity=0.176 Sum_probs=152.6
Q ss_pred cccCeEEeeccccCcccCcccCCCCCCCEEEccCCc-cCCCChhhhccCCCcCEEEcCC-CccccccCccccCCCcCcEE
Q 035857 202 KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNR-LDGPIPPTIGNLTNLTSLDLSS-NQLSGLLPREVRNLKYLASL 279 (404)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 279 (404)
++++.|++++|.++...+..+..+++|+.|++++|+ +....+.++.++++|++|++++ ++++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777765555566777778888888776 6655555677788888888887 77777776777788888888
Q ss_pred EccCCccCCCCCCcccCCCCcc---EEEcCCc-cccCCCCchhhcCCCcc-EEEecCccccccCchhhhccccceEEEcc
Q 035857 280 SLNGNNLIGPIPPTIGYLTNLT---SLNLGYN-QLNSSIPPELMNCSQLL-NLVLSHNSLSGSIPSEIGNLIHLRQLDLS 354 (404)
Q Consensus 280 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 354 (404)
++++|.+.. ++. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.+....+..+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888763 554 77777777 8899888 88776667788888999 9999999888444444555 789999999
Q ss_pred CCc-ccccCCccccCC-CcceEEEccCCeeeeecCCcccccCcceeccC
Q 035857 355 HNF-INGTIPSQLGKI-TNVSEVDVSKNNLSGVIPKSVLRVPGLKWSEN 401 (404)
Q Consensus 355 ~~~-~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 401 (404)
+|. +....+..|.++ ++|++|++++|++++..+..|.+++.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 994 887777888888 89999999999998666677888888888775
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.1e-23 Score=189.46 Aligned_cols=234 Identities=16% Similarity=0.219 Sum_probs=115.3
Q ss_pred ccccEEEecCCCCCCCCcccccccccceEEEeccccccCc-ccccccCccccCeEEeeccccCcccCcccCCCCCCCEEE
Q 035857 154 KNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGP-LSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELD 232 (404)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 232 (404)
++++.++++++.+....+. +..+++|+.|+++++.+... ....+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444433322221 22344455555554443322 233344555555555555554433334444555566666
Q ss_pred ccCC-ccCC-CChhhhccCCCcCEEEcCCC-ccccc-cCccccCCC-cCcEEEccCCc--cC-CCCCCcccCCCCccEEE
Q 035857 233 LSHN-RLDG-PIPPTIGNLTNLTSLDLSSN-QLSGL-LPREVRNLK-YLASLSLNGNN--LI-GPIPPTIGYLTNLTSLN 304 (404)
Q Consensus 233 l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~ 304 (404)
+++| .+.. ..+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. +. ..++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6555 3332 12333455566666666665 55432 233344555 66666666653 22 12333444566666666
Q ss_pred cCCcc-ccCCCCchhhcCCCccEEEecCcc-ccccCchhhhccccceEEEccCCcccccCCccccCC-CcceEEEccCCe
Q 035857 305 LGYNQ-LNSSIPPELMNCSQLLNLVLSHNS-LSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI-TNVSEVDVSKNN 381 (404)
Q Consensus 305 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~ 381 (404)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +... .+..+ .++..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 66665 444444555666666666666663 22222234556666666666666 3322 22222 124444466666
Q ss_pred eeeecCCcccc
Q 035857 382 LSGVIPKSVLR 392 (404)
Q Consensus 382 ~~~~~~~~~~~ 392 (404)
+++..|..+.+
T Consensus 305 l~~~~~~~~~~ 315 (336)
T 2ast_B 305 FTTIARPTIGN 315 (336)
T ss_dssp SCCTTCSSCSS
T ss_pred CccccCCcccc
Confidence 66666655543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.5e-21 Score=171.11 Aligned_cols=204 Identities=25% Similarity=0.177 Sum_probs=165.8
Q ss_pred cccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCc
Q 035857 173 TLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNL 252 (404)
Q Consensus 173 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 252 (404)
.+..+++++.++++++.++...... .+.++.|++++|.++...+..+..+++|+.|++++|.+... +. ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred cccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 3567788999999888877543322 36889999999998866667788889999999999988743 22 2678899
Q ss_pred CEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCc
Q 035857 253 TSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
+.|++++|++.. .+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999998874 4456778899999999999988666677888999999999999998777777888899999999999
Q ss_pred cccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeee
Q 035857 333 SLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 383 (404)
.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 998666666788899999999999988 56777777889999999999886
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.4e-23 Score=188.72 Aligned_cols=245 Identities=22% Similarity=0.251 Sum_probs=194.6
Q ss_pred cccEEEecCCCCCCCCccccccc--ccceEEEeccccccCcccccccCccccCeEEeeccccCcc-cCcccCCCCCCCEE
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHL--NQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGS-IPSTIGYLNLLDEL 231 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 231 (404)
.++.++++++.+. +..+..+ ++++.++++++.+...... +..+++|+.|++++|.+.+. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888887665 3445566 8999999999988766544 55789999999999988743 66678889999999
Q ss_pred EccCCccCCCChhhhccCCCcCEEEcCCC-ccccc-cCccccCCCcCcEEEccCC-ccCCC-CCCcccCCC-CccEEEcC
Q 035857 232 DLSHNRLDGPIPPTIGNLTNLTSLDLSSN-QLSGL-LPREVRNLKYLASLSLNGN-NLIGP-IPPTIGYLT-NLTSLNLG 306 (404)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~ 306 (404)
++++|.+....+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+.+. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999887666778889999999999999 56642 4455778999999999999 77643 455677889 99999999
Q ss_pred Cc--ccc-CCCCchhhcCCCccEEEecCcc-ccccCchhhhccccceEEEccCCc-ccccCCccccCCCcceEEEccCCe
Q 035857 307 YN--QLN-SSIPPELMNCSQLLNLVLSHNS-LSGSIPSEIGNLIHLRQLDLSHNF-INGTIPSQLGKITNVSEVDVSKNN 381 (404)
Q Consensus 307 ~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~ 381 (404)
+| .++ ...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|. +.......+.++++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 454 2344566789999999999999 666777888999999999999994 44444446888999999999999
Q ss_pred eeeecCCcc-cccCcceeccCcCC
Q 035857 382 LSGVIPKSV-LRVPGLKWSENNLE 404 (404)
Q Consensus 382 ~~~~~~~~~-~~~~~l~~~~~~~~ 404 (404)
++...-..+ ..++.|+++.|+++
T Consensus 283 i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 283 VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred cCHHHHHHHHhhCcceEEecccCc
Confidence 443222233 46999999998874
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.4e-23 Score=188.86 Aligned_cols=254 Identities=20% Similarity=0.168 Sum_probs=169.6
Q ss_pred EEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCc----hhhcCCc-cccEEEecCCCCCCCCccccccc-----cc
Q 035857 110 SLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLP----REVGNMK-NLKTLLLNRNSLTGPIPSTLYHL-----NQ 179 (404)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 179 (404)
++.++.+.+++..+..+...++|++|++++|.+.+... .++..++ +|++|++++|.+.......+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677788876666666666679999999999887766 6777888 89999999998876555555554 88
Q ss_pred ceEEEeccccccCcccccc----cCc-cccCeEEeeccccCcccCcc----cCC-CCCCCEEEccCCccCCCChh----h
Q 035857 180 LRILYLAYNNLVGPLSKEV----GNL-KNLDRLLLNRNNLTGSIPST----IGY-LNLLDELDLSHNRLDGPIPP----T 245 (404)
Q Consensus 180 L~~l~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~----~ 245 (404)
|+.|++++|.+.......+ ..+ ++|+.|++++|.+++..... +.. +++|++|++++|.+...... +
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8899988888775544433 333 78888888888876443332 223 35788888888877654433 3
Q ss_pred hccCC-CcCEEEcCCCccccccCcc----ccCC-CcCcEEEccCCccCCC----CCCcccC-CCCccEEEcCCccccCCC
Q 035857 246 IGNLT-NLTSLDLSSNQLSGLLPRE----VRNL-KYLASLSLNGNNLIGP----IPPTIGY-LTNLTSLNLGYNQLNSSI 314 (404)
Q Consensus 246 l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 314 (404)
+..++ +|++|++++|++++..+.. +..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 7888888888877555432 3334 4788888888877642 2233333 357888888888777654
Q ss_pred Cch----hhcCCCccEEEecCccccccC-------chhhhccccceEEEccCCcccccCC
Q 035857 315 PPE----LMNCSQLLNLVLSHNSLSGSI-------PSEIGNLIHLRQLDLSHNFINGTIP 363 (404)
Q Consensus 315 ~~~----~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~L~l~~~~~~~~~~ 363 (404)
... +..+++|+.|++++|.+.... +..+..+++|+.|++++|++....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 422 345677777887777744322 2234556677777777777665444
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.2e-21 Score=168.94 Aligned_cols=204 Identities=31% Similarity=0.279 Sum_probs=178.0
Q ss_pred hhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCC
Q 035857 149 EVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLL 228 (404)
Q Consensus 149 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 228 (404)
.+..++++++++++++.+... +..+ .++++.|+++++.+.......+..+++|+.|++++|.++.... ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 356789999999999988843 3333 3689999999999988878889999999999999999874322 2678999
Q ss_pred CEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCc
Q 035857 229 DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYN 308 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 308 (404)
+.|++++|.+. ..+..+..+++|+.|++++|+++...+..+..+++|++|++++|.+....+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 56677889999999999999999888888999999999999999998666667889999999999999
Q ss_pred cccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 309 QLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 309 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
.+....+..|..+++|+.|++++|.+. .+|..+...++|+.+++.+|++.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 999777777889999999999999998 67778888889999999999876
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.2e-22 Score=184.36 Aligned_cols=258 Identities=22% Similarity=0.193 Sum_probs=194.2
Q ss_pred EEEccCccccCCCccccCCCCCCcEEEccCcccCCCCh----hhhhCCC-CccEEEccCCcCCCCCchhhcCC-----cc
Q 035857 86 SLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIP----STLYHLN-QLRVLFLAYNNLVGPLPREVGNM-----KN 155 (404)
Q Consensus 86 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 155 (404)
+++++++.+.+..+..+...++|++|++++|.++.... ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888886677767777779999999999987666 6777888 89999999999988777777664 99
Q ss_pred ccEEEecCCCCCCCCcccc----ccc-ccceEEEeccccccCcccccc----cC-ccccCeEEeeccccCcccC----cc
Q 035857 156 LKTLLLNRNSLTGPIPSTL----YHL-NQLRILYLAYNNLVGPLSKEV----GN-LKNLDRLLLNRNNLTGSIP----ST 221 (404)
Q Consensus 156 L~~L~l~~~~~~~~~~~~~----~~~-~~L~~l~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~----~~ 221 (404)
|++|++++|.+....+..+ ..+ ++|+.|++++|.+.......+ .. +++|++|++++|.+++... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999875554433 344 899999999999876655443 33 4699999999998874332 23
Q ss_pred cCCCC-CCCEEEccCCccCCCChhh----hccC-CCcCEEEcCCCccccccC----ccccC-CCcCcEEEccCCccCCCC
Q 035857 222 IGYLN-LLDELDLSHNRLDGPIPPT----IGNL-TNLTSLDLSSNQLSGLLP----REVRN-LKYLASLSLNGNNLIGPI 290 (404)
Q Consensus 222 ~~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~----~~~~~-~~~L~~L~l~~~~~~~~~ 290 (404)
+...+ +|++|++++|.+....+.. +..+ ++|++|++++|.+++... ..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 8999999999987666543 4455 599999999999886332 23333 469999999999987543
Q ss_pred C----CcccCCCCccEEEcCCccccCCCCc-------hhhcCCCccEEEecCccccccCchhhh
Q 035857 291 P----PTIGYLTNLTSLNLGYNQLNSSIPP-------ELMNCSQLLNLVLSHNSLSGSIPSEIG 343 (404)
Q Consensus 291 ~----~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~~~~~~ 343 (404)
+ ..+..+++|++|++++|.+...... .+..+++|+.|++++|++.+..+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 3 3456779999999999985543332 455778899999999998866444443
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1e-21 Score=167.47 Aligned_cols=197 Identities=22% Similarity=0.211 Sum_probs=156.0
Q ss_pred CcccEEeCCCccccCCCCcccCCCCCCcEEEeCCcc-ccccCCCcccCCCCCcEEEccC-ccccCCCccccCCCCCCcEE
Q 035857 34 RNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNK-LDGLIPSSIGNLTNLTSLNLSL-NQLSGRLPQEVGNLKNLDSL 111 (404)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 111 (404)
++|++|+++++.++++.+..|..+++|++|++++|. +....+..|.++++|++|++++ +.+....+.+|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378888888888886666678888889999998886 7766666788888899999987 78875666778888889999
Q ss_pred EccCcccCCCChhhhhCCCCcc---EEEccCC-cCCCCCchhhcCCcccc-EEEecCCCCCCCCcccccccccceEEEec
Q 035857 112 FLDNNNLTGPIPSTLYHLNQLR---VLFLAYN-NLVGPLPREVGNMKNLK-TLLLNRNSLTGPIPSTLYHLNQLRILYLA 186 (404)
Q Consensus 112 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 186 (404)
++++|.++. .+. +..+++|+ +|+++++ .+....+..|..+++|+ +|++++|++.......+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 998888875 333 67777777 9999988 78766666788899999 9999998887444444444 789999999
Q ss_pred ccc-ccCcccccccCc-cccCeEEeeccccCcccCcccCCCCCCCEEEccCC
Q 035857 187 YNN-LVGPLSKEVGNL-KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHN 236 (404)
Q Consensus 187 ~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 236 (404)
+|. +.......+..+ ++|+.|++++|.++.. +.. .+++++.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 985 776667778888 9999999999988733 322 5778999998875
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=9.5e-24 Score=193.40 Aligned_cols=237 Identities=19% Similarity=0.199 Sum_probs=121.7
Q ss_pred hhCCCCccEEEccCCcCCCCCc----hhhcCCccccEEEecCCCCCCC---Cc-------ccccccccceEEEecccccc
Q 035857 126 LYHLNQLRVLFLAYNNLVGPLP----REVGNMKNLKTLLLNRNSLTGP---IP-------STLYHLNQLRILYLAYNNLV 191 (404)
Q Consensus 126 ~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~---~~-------~~~~~~~~L~~l~l~~~~~~ 191 (404)
+..+++|++|++++|.+....+ ..+..+++|++|++++|.+... .+ ..+..+++|+.|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3344445555555444443222 2233455555555555433211 11 11244556666666665554
Q ss_pred C----cccccccCccccCeEEeeccccCcccCcc----cCCC---------CCCCEEEccCCccCC-CCh---hhhccCC
Q 035857 192 G----PLSKEVGNLKNLDRLLLNRNNLTGSIPST----IGYL---------NLLDELDLSHNRLDG-PIP---PTIGNLT 250 (404)
Q Consensus 192 ~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~---------~~L~~L~l~~~~~~~-~~~---~~l~~~~ 250 (404)
. ..+..+..+++|++|++++|.++...+.. +..+ ++|++|++++|++.. ..+ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 4 23334556677777777777664322222 2222 667777777776642 122 2445666
Q ss_pred CcCEEEcCCCccccc-----cCccccCCCcCcEEEccCCccC----CCCCCcccCCCCccEEEcCCccccCCC----Cch
Q 035857 251 NLTSLDLSSNQLSGL-----LPREVRNLKYLASLSLNGNNLI----GPIPPTIGYLTNLTSLNLGYNQLNSSI----PPE 317 (404)
Q Consensus 251 ~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~ 317 (404)
+|++|++++|.+... .+..+..+++|+.|++++|.+. ..++..+..+++|++|++++|.+.+.+ +..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 777777776666521 1224455566666666666653 234444555666666666666655431 222
Q ss_pred hhc--CCCccEEEecCccccc----cCchhh-hccccceEEEccCCcccccC
Q 035857 318 LMN--CSQLLNLVLSHNSLSG----SIPSEI-GNLIHLRQLDLSHNFINGTI 362 (404)
Q Consensus 318 ~~~--~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~~~~~ 362 (404)
+.. +++|+.|++++|.+.+ .++..+ .++++|+.|++++|++++..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 322 5566666666666654 244444 34566666666666655443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-20 Score=161.47 Aligned_cols=178 Identities=27% Similarity=0.292 Sum_probs=101.5
Q ss_pred ccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEcc
Q 035857 203 NLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLN 282 (404)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 282 (404)
..+.++++++.++ ..+..+ .++++.|++++|.+....+.++..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3445555555444 222222 2455666666665555445555556666666666666655555555556666666666
Q ss_pred CCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccC
Q 035857 283 GNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTI 362 (404)
Q Consensus 283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 362 (404)
+|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66655444445555666666666666665544444555666666666666665444445566666666666666666555
Q ss_pred CccccCCCcceEEEccCCeee
Q 035857 363 PSQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 363 ~~~~~~~~~L~~l~l~~~~~~ 383 (404)
+..|..+++|+.|++++|+++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 555666666666666666665
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1e-20 Score=167.45 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=138.6
Q ss_pred hcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCC
Q 035857 150 VGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLD 229 (404)
Q Consensus 150 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 229 (404)
...+++|++|+++++.+... ..+..+++|+.|++++|.+..... +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 34577888888888877643 246778888888888887765544 77788888888888877632 2466777888
Q ss_pred EEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCcc
Q 035857 230 ELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQ 309 (404)
Q Consensus 230 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 309 (404)
+|++++|.+... + .+..+++|+.|++++|.++...+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 888888877643 2 37777888888888887765443 6677778888888877763 333 6677778888888777
Q ss_pred ccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccc
Q 035857 310 LNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 310 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
+.+..+ +..+++|+.|++++|.+.+.. .+..+++|+.|++++|+++.
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 765432 667777778888777776443 36777777777777777763
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-22 Score=185.05 Aligned_cols=93 Identities=23% Similarity=0.258 Sum_probs=43.1
Q ss_pred cCCCCCCCEEEccCCccC----CCChhhhccCCCcCEEEcCCCccccc----cCcccc--CCCcCcEEEccCCccCC---
Q 035857 222 IGYLNLLDELDLSHNRLD----GPIPPTIGNLTNLTSLDLSSNQLSGL----LPREVR--NLKYLASLSLNGNNLIG--- 288 (404)
Q Consensus 222 ~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~--- 288 (404)
+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+++. .+..+. .+++|++|++++|.+.+
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 334444445555444442 12233444455555555555554432 122221 14555555555555543
Q ss_pred -CCCCcc-cCCCCccEEEcCCccccCCC
Q 035857 289 -PIPPTI-GYLTNLTSLNLGYNQLNSSI 314 (404)
Q Consensus 289 -~~~~~~-~~~~~L~~L~l~~~~~~~~~ 314 (404)
.++..+ ..+++|++|++++|.+.+..
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 133333 33566666666666655443
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=172.24 Aligned_cols=224 Identities=21% Similarity=0.229 Sum_probs=124.0
Q ss_pred ccccEEEecCCCCCCCCcc---cccccccceEEEeccccccCcccccc--cCccccCeEEeeccccCcccC----cccCC
Q 035857 154 KNLKTLLLNRNSLTGPIPS---TLYHLNQLRILYLAYNNLVGPLSKEV--GNLKNLDRLLLNRNNLTGSIP----STIGY 224 (404)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~ 224 (404)
..++.+.+.++.+...... .+..+++|+.|+++++.+....+..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566677766655421100 12234557777777776665555555 666777777777776653222 22234
Q ss_pred CCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccc---c-CccccCCCcCcEEEccCCccCCCCCC----cccC
Q 035857 225 LNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGL---L-PREVRNLKYLASLSLNGNNLIGPIPP----TIGY 296 (404)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~ 296 (404)
+++|++|++++|.+....+..+..+++|++|++++|++... . ...+..+++|++|++++|.+. .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 66667777776666655555666666666666666664321 1 122345566666666666654 2121 1344
Q ss_pred CCCccEEEcCCccccCCCCchhhcC---CCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcce
Q 035857 297 LTNLTSLNLGYNQLNSSIPPELMNC---SQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVS 373 (404)
Q Consensus 297 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 373 (404)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.+++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 5666666666666665544444443 46666666666665 3444332 5666666666666532 22 45556666
Q ss_pred EEEccCCeee
Q 035857 374 EVDVSKNNLS 383 (404)
Q Consensus 374 ~l~l~~~~~~ 383 (404)
+|++++|+++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 6666666654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=3.5e-20 Score=159.15 Aligned_cols=176 Identities=28% Similarity=0.300 Sum_probs=154.6
Q ss_pred CCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEc
Q 035857 226 NLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305 (404)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 305 (404)
.+.++++++++.+. .+|..+. +.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45788999999887 4454443 68999999999999888888999999999999999998777777899999999999
Q ss_pred CCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeee
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGV 385 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 385 (404)
++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999988778889999999999999999977777789999999999999999988778899999999999999999988
Q ss_pred cCCcccccCcc---eeccCcCC
Q 035857 386 IPKSVLRVPGL---KWSENNLE 404 (404)
Q Consensus 386 ~~~~~~~~~~l---~~~~~~~~ 404 (404)
.+..|.+++.| .+++|+++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBC
T ss_pred CHHHHhCCCCCCEEEeeCCcee
Confidence 77777665554 49999874
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5e-20 Score=162.95 Aligned_cols=192 Identities=24% Similarity=0.360 Sum_probs=107.6
Q ss_pred CCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEE
Q 035857 32 SLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSL 111 (404)
Q Consensus 32 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 111 (404)
.+++|++|+++++.++. .+ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.. . ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEE
Confidence 44556666666655542 22 35555666666666665553322 5555666666666665542 2 245556666666
Q ss_pred EccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEecccccc
Q 035857 112 FLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLV 191 (404)
Q Consensus 112 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 191 (404)
++++|.+... + .+..+++|++|++++|.+....+ +..+++|++|++++|.+..... +..+++|+.|++++|.+.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 6666655532 1 25556666666666666553322 5556666666666666553221 555666666666666555
Q ss_pred CcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccC
Q 035857 192 GPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLD 239 (404)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 239 (404)
.... +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++.
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 4332 556666666666666665322 2556666777777766664
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.3e-21 Score=170.23 Aligned_cols=201 Identities=23% Similarity=0.197 Sum_probs=82.7
Q ss_pred ccccEEEecCCCCCCCCcccc--cccccceEEEeccccccCccc----ccccCccccCeEEeeccccCcccCcccCCCCC
Q 035857 154 KNLKTLLLNRNSLTGPIPSTL--YHLNQLRILYLAYNNLVGPLS----KEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNL 227 (404)
Q Consensus 154 ~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 227 (404)
++|++|++++|.+....+..+ ..+++|+.|++++|.+..... ..+..+++|++|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 334444444444443333333 444444444444444432111 12223444445555444444333334444444
Q ss_pred CCEEEccCCccCCC--C--hhhhccCCCcCEEEcCCCccccccCc---cccCCCcCcEEEccCCccCCCCCCcccCC---
Q 035857 228 LDELDLSHNRLDGP--I--PPTIGNLTNLTSLDLSSNQLSGLLPR---EVRNLKYLASLSLNGNNLIGPIPPTIGYL--- 297 (404)
Q Consensus 228 L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--- 297 (404)
|++|++++|++... . ...+..+++|++|++++|+++..... .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 55555544443210 0 11123344444444444444321111 12334444455555444443333333332
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
++|++|++++|.+.. .+..+. ++|++|++++|.+.+. +. +..+++|+.|++++|+++
T Consensus 251 ~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 344455554444442 222221 4444455554444421 11 334444444555444443
No 95
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.83 E-value=4.5e-19 Score=162.55 Aligned_cols=336 Identities=13% Similarity=0.072 Sum_probs=225.0
Q ss_pred cccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCcc
Q 035857 21 SLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQ 100 (404)
Q Consensus 21 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 100 (404)
.++.+...+|.+|++|+.+.+... ++.+...+|.+|.+|+.+++.++ +..+...+|.++.+|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 455566777888888888888754 55466778888888888888654 44455677888888887776654 3324455
Q ss_pred ccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccc
Q 035857 101 EVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQL 180 (404)
Q Consensus 101 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 180 (404)
+|.++..++....... .......|.++++|+.+.+..+. ......+|.++++|+.+.+..+ +......+|.++..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 6666654443333222 22334567778888888876543 3355567778888888887655 333445567777777
Q ss_pred eEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCC
Q 035857 181 RILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSN 260 (404)
Q Consensus 181 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 260 (404)
+.+.+..+... ....+.....|+.+.+.... +......+..+..++.+.+..+... ....++..++.++.+.....
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 77766543221 12233345678888776543 2234456777888888888765332 55667778888888877665
Q ss_pred ccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCch
Q 035857 261 QLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPS 340 (404)
Q Consensus 261 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 340 (404)
.+ ....+..+.+|+.+.+..+ +......+|..|.+|+.+++... +......+|.+|.+|+.+.+..+ +......
T Consensus 287 ~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 43 3456777888888888765 33344567888889999888654 55566778888999999988766 5556677
Q ss_pred hhhccccceEEEccCCcccccCCccccCCCcceEE
Q 035857 341 EIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEV 375 (404)
Q Consensus 341 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 375 (404)
+|.+|.+|+.+++..+ +. ....+|.+|++|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8889999999988765 22 234678888888875
No 96
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.83 E-value=1.7e-19 Score=165.31 Aligned_cols=334 Identities=11% Similarity=0.025 Sum_probs=252.0
Q ss_pred cccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChh
Q 035857 45 ILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPS 124 (404)
Q Consensus 45 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 124 (404)
.++.+...+|..|.+|+.+.+..+ +..+...+|.+|++|+.+++..+ +......+|.+++.|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 345567788999999999999754 66677789999999999999765 44456678999999999887654 3334455
Q ss_pred hhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCcccc
Q 035857 125 TLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNL 204 (404)
Q Consensus 125 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 204 (404)
.|.++..+...... ........+|.++++|+.+.+.++. .......|.++++|+.+.+..+ +......+|..+..|
T Consensus 135 aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 66666543333322 2233455688999999999997653 3345567889999999988654 555566788899999
Q ss_pred CeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCC
Q 035857 205 DRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGN 284 (404)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 284 (404)
+.+.+..+... . ......+.+|+.+.+... .......++..+..++.+.+..+.. .+....|..++.++.+.....
T Consensus 211 ~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce
Confidence 99888775433 1 223345678999999764 3335567788999999999987643 366778888999999988776
Q ss_pred ccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCc
Q 035857 285 NLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPS 364 (404)
Q Consensus 285 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 364 (404)
.+. ...|..+.+|+.+.+..+ +......+|..|.+|+.+++.+. +..+...+|.+|.+|+.+.+..+ +......
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 543 346788999999999765 55567788999999999999754 66566789999999999999876 6667889
Q ss_pred cccCCCcceEEEccCCeeeeecCCcccccCcce
Q 035857 365 QLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397 (404)
Q Consensus 365 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 397 (404)
+|.+|++|+++++..+ +. .+...|.+|..|+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 9999999999999854 33 4456899999887
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.7e-19 Score=149.03 Aligned_cols=164 Identities=27% Similarity=0.218 Sum_probs=110.2
Q ss_pred CCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEE
Q 035857 225 LNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLN 304 (404)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 304 (404)
.++++.|+++++.+....+..+..+++|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34667777777766655555566677777777777776666555566677777777777776644444566677777777
Q ss_pred cCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 305 LGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++. +.+++|+.|++++|.+++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 7777776655555667777777777777776555555667777777777777554 345667777777777777
Q ss_pred ecCCcccccCc
Q 035857 385 VIPKSVLRVPG 395 (404)
Q Consensus 385 ~~~~~~~~~~~ 395 (404)
.+|..+.+++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 77766665543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=6.5e-19 Score=146.75 Aligned_cols=163 Identities=28% Similarity=0.241 Sum_probs=114.9
Q ss_pred cccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEc
Q 035857 202 KNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSL 281 (404)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 281 (404)
+++++|+++++.++...+..+..+++|++|++++|.+....+..+..+++|++|++++|+++...+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 46666777766666444445666777777777777776555555667777777777777777666666677777777777
Q ss_pred cCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccccc
Q 035857 282 NGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGT 361 (404)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 361 (404)
++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+++|+.|++..|.+++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 777776555555677778888888888777666556777788888888888665 3456778888888888877
Q ss_pred CCccccCCCc
Q 035857 362 IPSQLGKITN 371 (404)
Q Consensus 362 ~~~~~~~~~~ 371 (404)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 7777776554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=2.7e-18 Score=154.76 Aligned_cols=239 Identities=21% Similarity=0.170 Sum_probs=145.2
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccc-cCCCcccCCCCCcEE-Ecc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDG-LIPSSIGNLTNLTSL-NLS 90 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L-~l~ 90 (404)
++++.++++++ .+|..+ .+++++|++++|.++.+.+.+|.++++|++|++++|.+.+ ....+|.++++++++ .+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56677777766 455543 3578888888888875555677888888888888887643 334567777776653 445
Q ss_pred CccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccC-CcCCCCCchhhcCCc-cccEEEecCCCCCC
Q 035857 91 LNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAY-NNLVGPLPREVGNMK-NLKTLLLNRNSLTG 168 (404)
Q Consensus 91 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 168 (404)
.+.+....+++|+.+++|+++++++|.+.......+....++..+++.+ +.+.......|..+. .+++|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5667655667777888888888888777655444455556666777654 344444444455543 46777777777664
Q ss_pred CCcccccccccceEEEecc-ccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhc
Q 035857 169 PIPSTLYHLNQLRILYLAY-NNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIG 247 (404)
Q Consensus 169 ~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 247 (404)
.....+ ...+++.+.+.. +.+......+|..+++|+.|++++|.++...+. .+.+|+.|.+.++.-....| .+.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-Cch
Confidence 333322 345667776654 445544455566667777777776666532221 23455555555543332333 355
Q ss_pred cCCCcCEEEcCC
Q 035857 248 NLTNLTSLDLSS 259 (404)
Q Consensus 248 ~~~~L~~L~l~~ 259 (404)
.+++|+.+++.+
T Consensus 244 ~l~~L~~l~l~~ 255 (350)
T 4ay9_X 244 KLVALMEASLTY 255 (350)
T ss_dssp TCCSCCEEECSC
T ss_pred hCcChhhCcCCC
Confidence 556666666644
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=5.7e-18 Score=152.68 Aligned_cols=238 Identities=18% Similarity=0.140 Sum_probs=150.9
Q ss_pred cEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCC-CcccccccccceE-EEec
Q 035857 109 DSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGP-IPSTLYHLNQLRI-LYLA 186 (404)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-l~l~ 186 (404)
+.++.+++.++. +|..+ .+++++|++++|.++.....+|.++++|++|++++|++.+. ....|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 456677776663 33333 24688888888888766666788888888888888876543 2345677777665 4444
Q ss_pred cccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCC-ccCCCChhhhccC-CCcCEEEcCCCcccc
Q 035857 187 YNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHN-RLDGPIPPTIGNL-TNLTSLDLSSNQLSG 264 (404)
Q Consensus 187 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 264 (404)
.+.+....+..|..+++|++|++++|.+....+..+....++..+++.++ .+......++..+ ..++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56666666677788888888888888776544444445556667777553 4443333444444 357777777777776
Q ss_pred ccCccccCCCcCcEEEccC-CccCCCCC-CcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhh
Q 035857 265 LLPREVRNLKYLASLSLNG-NNLIGPIP-PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEI 342 (404)
Q Consensus 265 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 342 (404)
+....+. ..+|+.+.+++ +.+. .++ ..|..+++|++|++++|.++...+.. +.+|+.|.+.++...+.+| .+
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CT
T ss_pred CChhhcc-ccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cc
Confidence 5555443 35677777765 3443 443 35667777777777777776543333 3456666666654443444 35
Q ss_pred hccccceEEEccC
Q 035857 343 GNLIHLRQLDLSH 355 (404)
Q Consensus 343 ~~~~~L~~L~l~~ 355 (404)
..+++|+.+++.+
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 6677777777765
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.4e-18 Score=150.81 Aligned_cols=173 Identities=28% Similarity=0.377 Sum_probs=113.1
Q ss_pred ccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcC
Q 035857 174 LYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLT 253 (404)
Q Consensus 174 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 253 (404)
...+++|+.|+++++.+... ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.. ...+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCC
Confidence 45677777777777766544 236667777777777777764322 6667777777777777653 23466777777
Q ss_pred EEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcc
Q 035857 254 SLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNS 333 (404)
Q Consensus 254 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 333 (404)
.|++++|++... ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 777777776643 3456667777777777776533 456666777777777776665433 6666777777777776
Q ss_pred ccccCchhhhccccceEEEccCCcccc
Q 035857 334 LSGSIPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 334 ~~~~~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
+.+. + .+..+++|+.|++++|++..
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 6642 2 36666777777777776654
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=3.3e-19 Score=159.40 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=129.2
Q ss_pred cccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCc----cCCCChhhhccCCCc
Q 035857 177 LNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNR----LDGPIPPTIGNLTNL 252 (404)
Q Consensus 177 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~~L 252 (404)
+++|+.+++.. .+......+|.+|++|+.++++++.+....+.+|..+.++..+...... .......++.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55555555554 4444445555556666666665555544444455555444444443311 111223344455555
Q ss_pred C-EEEcCCCcc-ccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEec
Q 035857 253 T-SLDLSSNQL-SGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLS 330 (404)
Q Consensus 253 ~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 330 (404)
+ .+.+..... ............++..+.+.+.-...........+++|+.+++.+|.+......+|..|++|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 5 344433211 11000111123555566665542211111111237788888888887877777778888888888888
Q ss_pred CccccccCchhhhccccce-EEEccCCcccccCCccccCCCcceEEEccCCeeeeecCCcccccCcce
Q 035857 331 HNSLSGSIPSEIGNLIHLR-QLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIPKSVLRVPGLK 397 (404)
Q Consensus 331 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 397 (404)
++ +..+...+|.+|.+|+ .+++.+ .+....+.+|.+|++|+++++++++++...+..|.+|++|+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 86 6656667788888888 888877 66667778888888888888888888877777888888876
No 103
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=2.4e-17 Score=150.41 Aligned_cols=268 Identities=13% Similarity=0.094 Sum_probs=199.8
Q ss_pred cCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 31 GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
..+..++.+.+... ++.+...+|..+ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 34467777877764 333566777775 6888888765 555666677774 688888876 455456678888888888
Q ss_pred EEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccc
Q 035857 111 LFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 111 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
+++..+.++......|. +..|+.+.+.. .+..+...+|.++++|+.+.+..+ +......+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88888777755555555 57888888874 366567778888888998888764 44344556666 688888884 455
Q ss_pred cCcccccccCccccCeEEeeccccC-----cccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccc
Q 035857 191 VGPLSKEVGNLKNLDRLLLNRNNLT-----GSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGL 265 (404)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 265 (404)
......+|.+|++|+.+.+.++... ......|..|++|+.+.+.. .+......+|.+|++|+.+.+..+ ++.+
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 6666778899999999999887654 34566788999999999984 466677788999999999999654 6667
Q ss_pred cCccccCCCcCcEEEccCCccCCCCCCcccCCC-CccEEEcCCcccc
Q 035857 266 LPREVRNLKYLASLSLNGNNLIGPIPPTIGYLT-NLTSLNLGYNQLN 311 (404)
Q Consensus 266 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 311 (404)
...+|.++ +|+.+++.++.........|..++ +++.|.+..+.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 78889999 999999999987755666777774 7889988877554
No 104
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=3.9e-19 Score=158.93 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=74.2
Q ss_pred cCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCcc-EEEcCCccccCCCCchhhcCCCccE
Q 035857 248 NLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLT-SLNLGYNQLNSSIPPELMNCSQLLN 326 (404)
Q Consensus 248 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~ 326 (404)
.+++|+.+++++|+++.+...+|.++++|+.+++.++ +......+|.+|++|+ .+++.. .+......+|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3677777777777777666777777777777777776 4444555677777777 777777 566566677777888888
Q ss_pred EEecCccccccCchhhhccccceEEE
Q 035857 327 LVLSHNSLSGSIPSEIGNLIHLRQLD 352 (404)
Q Consensus 327 L~l~~~~~~~~~~~~~~~~~~L~~L~ 352 (404)
+++.++.+......+|.+|++|+.++
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 88877777766667777787777775
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=8.6e-18 Score=140.91 Aligned_cols=133 Identities=26% Similarity=0.299 Sum_probs=69.4
Q ss_pred CCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEc
Q 035857 226 NLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNL 305 (404)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 305 (404)
+++++|++++|.+....+..+..+++|+.|++++|++....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 45555555555555444444555555555555555555554555555555555555555554333333445555555555
Q ss_pred CCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcc
Q 035857 306 GYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFI 358 (404)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (404)
++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55555544444455555555555555555544444444455555555555544
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.6e-18 Score=147.60 Aligned_cols=172 Identities=31% Similarity=0.443 Sum_probs=120.8
Q ss_pred cCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 31 GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
..+++|+.|+++++.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.. . ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3567777777777776633 236677777777777777764432 6777777777777777753 2 34777777888
Q ss_pred EEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccc
Q 035857 111 LFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNL 190 (404)
Q Consensus 111 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 190 (404)
|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 88777777643 4566777788888887777754 567777888888888887765432 77778888888887777
Q ss_pred cCcccccccCccccCeEEeeccccCc
Q 035857 191 VGPLSKEVGNLKNLDRLLLNRNNLTG 216 (404)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (404)
... ..+..+++|+.|++++|.+..
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred CCC--hhhccCCCCCEEECcCCcccC
Confidence 654 246778888888888887653
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=7.4e-18 Score=138.95 Aligned_cols=153 Identities=16% Similarity=0.273 Sum_probs=106.4
Q ss_pred CCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccE
Q 035857 223 GYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTS 302 (404)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 302 (404)
..+++|++|+++++.+. ..+ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666777666665 233 466667777777777655432 35666777777777777776555666777788888
Q ss_pred EEcCCccccCCCCchhhcCCCccEEEecCcc-ccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCe
Q 035857 303 LNLGYNQLNSSIPPELMNCSQLLNLVLSHNS-LSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNN 381 (404)
Q Consensus 303 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 381 (404)
|++++|.+.+..+..+..+++|++|++++|. +. .++ .+..+++|+.|++++|.+.+. + .+.++++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 8888888776666777778888888888887 54 344 677788888888888887753 2 67788888888888888
Q ss_pred ee
Q 035857 382 LS 383 (404)
Q Consensus 382 ~~ 383 (404)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 75
No 108
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.75 E-value=1.2e-16 Score=145.76 Aligned_cols=269 Identities=11% Similarity=0.095 Sum_probs=216.9
Q ss_pred cCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCcc
Q 035857 54 FGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLR 133 (404)
Q Consensus 54 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 133 (404)
+..+..++.+.+.. .+..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|.++++|+
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 34558899999976 4555667788885 7999999876 555667788885 799999986 55556667899999999
Q ss_pred EEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccc
Q 035857 134 VLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNN 213 (404)
Q Consensus 134 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 213 (404)
.+++.++.+......+|. +.+|+.+.+..+ +......+|.++++|+.+.+.. .+......+|.+ .+|+.+.+.++
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~~- 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPNG- 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEETT-
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCCC-
Confidence 999999888877777776 689999999854 5556677899999999999976 455566677877 68999999654
Q ss_pred cCcccCcccCCCCCCCEEEccCCccC-----CCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCC
Q 035857 214 LTGSIPSTIGYLNLLDELDLSHNRLD-----GPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIG 288 (404)
Q Consensus 214 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 288 (404)
++.....+|..|++|+++.+.++... .....+|.+|++|+.+++.. .++.+...+|.++++|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 44456778999999999999987654 35677899999999999984 577788889999999999999765 444
Q ss_pred CCCCcccCCCCccEEEcCCccccCCCCchhhcCC-CccEEEecCcccc
Q 035857 289 PIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCS-QLLNLVLSHNSLS 335 (404)
Q Consensus 289 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 335 (404)
....+|..+ +|+.+++.++.........|..++ +++.|.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 556788999 999999999988877777888874 7899999988765
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.1e-17 Score=138.62 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=75.4
Q ss_pred CeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCC-hhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccC
Q 035857 205 DRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPI-PPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNG 283 (404)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (404)
+.++++++.++. +|..+ .+.+++|++++|.+.... ...+..+++|+.|++++|+++...+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355555555542 22221 234455555555554332 22345555555555555555544444455555555555555
Q ss_pred CccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 284 NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5554333334445555555555555555444444555555555555555555444444555555555555555443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.1e-17 Score=158.42 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=137.0
Q ss_pred cccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEcc
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLS 234 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (404)
.+..+.+....+... ..+..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 22 ~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 344444544444422 23556778888888877766542 46778888888888887764332 6777888888888
Q ss_pred CCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCC
Q 035857 235 HNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 314 (404)
Q Consensus 235 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (404)
+|.+.. . ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..
T Consensus 96 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 96 ENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 887763 2 3577778888888888877653 3466778888888888877643 55677788888888888777554
Q ss_pred CchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCC
Q 035857 315 PPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKIT 370 (404)
Q Consensus 315 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 370 (404)
+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.......+..+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~ 221 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLV 221 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEE
Confidence 4 67778888888888877743 3567778888888888877655444444333
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=5.2e-17 Score=137.10 Aligned_cols=152 Identities=24% Similarity=0.236 Sum_probs=92.5
Q ss_pred cCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccC
Q 035857 204 LDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNG 283 (404)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 283 (404)
.+.++.+++.++ ..+.. ..++++.|++++|.+....+..+..+++|+.|++++|++.......+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666555554 22222 235667777777766655566666666677777776666655555566666666666666
Q ss_pred CccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCccc
Q 035857 284 NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
|.+....+..+..+++|++|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|+.|++.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 6665444444556666666666666665 34455566666666666666666444455566666666666666655
No 112
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.73 E-value=5.3e-16 Score=142.14 Aligned_cols=317 Identities=10% Similarity=0.092 Sum_probs=145.0
Q ss_pred CcccCCCC-CCcEEEeCCccccccCCCcccCCCCCcEEEccCcc---ccCCCccccCCCCCCcEEEccCcccCCCChhhh
Q 035857 51 PLEFGNLK-DLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQ---LSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTL 126 (404)
Q Consensus 51 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 126 (404)
..+|..+. .|+.+.+... +..+...+|.++.+|+.+.+..+. +......+|.++.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34444442 3555555432 333344445555555555544321 22223344445555554444332 222333344
Q ss_pred hCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCe
Q 035857 127 YHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDR 206 (404)
Q Consensus 127 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 206 (404)
..+.+|+.+.+... +......+|..+..|+.+.+..+ +......+|. ...|+.+.+... .......++..+..++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhccccce
Confidence 44555555555332 22233344455555555555433 1112222232 234555554321 22223344445555555
Q ss_pred EEeeccccCcccCc-------------ccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCC
Q 035857 207 LLLNRNNLTGSIPS-------------TIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNL 273 (404)
Q Consensus 207 L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 273 (404)
.............. .+.....+..+.+... +......+|.+|+.|+.+.+..... .+...+|.++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c 287 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNC 287 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTC
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCcccccc
Confidence 44433322100000 0111223344444322 2223445666777777777755432 3455566666
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEc
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL 353 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 353 (404)
++|+.+.+... +......+|.+|.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +..+...+|.+|.+|+.+.+
T Consensus 288 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 77777776532 22233445666777777777543 44445566677777777777543 44455566777777777777
Q ss_pred cCCcccccCCccccCCCcceEEEccCCe
Q 035857 354 SHNFINGTIPSQLGKITNVSEVDVSKNN 381 (404)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 381 (404)
.++... ...+..+..|+.+.+..+.
T Consensus 365 ~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 365 SGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp SSCHHH---HHTCBCCCCC---------
T ss_pred CCceee---hhhhhccCCCCEEEeCCCC
Confidence 665432 1345566667666665544
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.5e-17 Score=150.56 Aligned_cols=157 Identities=27% Similarity=0.204 Sum_probs=80.5
Q ss_pred ccCeEEeeccccCcccCcccC-CCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEc
Q 035857 203 NLDRLLLNRNNLTGSIPSTIG-YLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSL 281 (404)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 281 (404)
.++.|++++|.++...+..+. .+++|+.|++++|.+....+.++..+++|+.|++++|+++...+..|..+++|+.|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 355555555555543334444 5555555555555555444445555555555555555555544445555555555555
Q ss_pred cCCccCCCCCCcccCCCCccEEEcCCccccCCCCchh---hcCCCccEEEecCccccccCchhhhcccc--ceEEEccCC
Q 035857 282 NGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPEL---MNCSQLLNLVLSHNSLSGSIPSEIGNLIH--LRQLDLSHN 356 (404)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 356 (404)
++|.+....+..|..+++|++|++++|.+.......| ..+++|+.|++++|.+....+..+..++. ++.|++.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555554444455555555555555555554333333 33555555555555555433344444444 244555555
Q ss_pred ccc
Q 035857 357 FIN 359 (404)
Q Consensus 357 ~~~ 359 (404)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 443
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=6.5e-17 Score=135.55 Aligned_cols=151 Identities=23% Similarity=0.314 Sum_probs=82.2
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
+.++++++.+. .+|..+. ++|+.|+++++.++++.+..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 2333221 45666666666665444455556666666666666655555555566666666666666
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCC
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSL 166 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 166 (404)
.+....+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 55533334455555555555555555544445555555555555555555544444455555555555555544
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=5.3e-17 Score=154.02 Aligned_cols=187 Identities=26% Similarity=0.325 Sum_probs=130.8
Q ss_pred cccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEcc
Q 035857 155 NLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLS 234 (404)
Q Consensus 155 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 234 (404)
+|+.|+++++.+.. ++..+ +++|+.|++++|.+.... ..+++|+.|++++|.++. ++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 88889998888875 33333 367888888888877433 456788888888888774 444 433 78888888
Q ss_pred CCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCC
Q 035857 235 HNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSI 314 (404)
Q Consensus 235 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 314 (404)
+|.+.. ++. .+++|+.|++++|.++.+.. .+++|+.|++++|.+.. +|. +. ++|+.|++++|.++. .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence 888774 343 56788888888888775433 45788888888888764 555 44 788888888887773 3
Q ss_pred CchhhcCCCc-------cEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCC
Q 035857 315 PPELMNCSQL-------LNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKI 369 (404)
Q Consensus 315 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 369 (404)
+. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|++++..|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 433 56 78888888777 466666667788888888887777766666554
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.8e-17 Score=159.00 Aligned_cols=190 Identities=24% Similarity=0.321 Sum_probs=157.1
Q ss_pred ccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeec
Q 035857 132 LRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNR 211 (404)
Q Consensus 132 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (404)
+..+.+....+.+.. .+..+++|+.|+++++.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 444455555555432 345789999999999998754 358889999999999998876554 88999999999999
Q ss_pred cccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCC
Q 035857 212 NNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIP 291 (404)
Q Consensus 212 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 291 (404)
|.+.. . ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+
T Consensus 97 N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 99874 2 3678899999999999998753 4688999999999999999865 568889999999999999975444
Q ss_pred CcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccccc
Q 035857 292 PTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS 337 (404)
Q Consensus 292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 337 (404)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 88899999999999999864 4688999999999999998754
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=4.2e-17 Score=134.39 Aligned_cols=153 Identities=15% Similarity=0.231 Sum_probs=92.5
Q ss_pred cCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcE
Q 035857 31 GSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDS 110 (404)
Q Consensus 31 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 110 (404)
..+++|+.|+++++.++ ..+ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..++.+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666665 233 45666666666666664432 235556666666666666665445556666666666
Q ss_pred EEccCcccCCCChhhhhCCCCccEEEccCCc-CCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEecccc
Q 035857 111 LFLDNNNLTGPIPSTLYHLNQLRVLFLAYNN-LVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNN 189 (404)
Q Consensus 111 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 189 (404)
|++++|.++...+..+..+++|++|++++|. +.+. + .+..+++|++|++++|.+.... .+..+++|+.|+++++.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 6666666665555566666667777776665 4432 2 4666677777777776665422 46666777777776665
Q ss_pred cc
Q 035857 190 LV 191 (404)
Q Consensus 190 ~~ 191 (404)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 43
No 118
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.72 E-value=1.4e-15 Score=139.22 Aligned_cols=323 Identities=11% Similarity=0.079 Sum_probs=210.8
Q ss_pred ccccCcccccCCC-cccEEeCCCccccCCCCcccCCCCCCcEEEeCCcc---ccccCCCcccCCCCCcEEEccCccccCC
Q 035857 22 LTGTIPAEIGSLR-NLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNK---LDGLIPSSIGNLTNLTSLNLSLNQLSGR 97 (404)
Q Consensus 22 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 97 (404)
++.+...+|.+++ .|+.+.+... ++.+...+|.+|.+|+.+.+..+. +..+...+|.++.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 4455666777774 5888888764 444667788888888888886542 45556677778888887776654 3334
Q ss_pred CccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCccccccc
Q 035857 98 LPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHL 177 (404)
Q Consensus 98 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 177 (404)
...+|..+.+|+.+.+.... .......|..+..|+.+.+..+ +..+...+|.. ..|+.+.+...... ....++..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhc
Confidence 55677788888888886542 3344556777788888877653 33344455543 56777777654322 344556677
Q ss_pred ccceEEEeccccccCccc-------------ccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChh
Q 035857 178 NQLRILYLAYNNLVGPLS-------------KEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPP 244 (404)
Q Consensus 178 ~~L~~l~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (404)
..+..+............ ..+.....+..+.+... ++.....+|..|.+|+.+.+..... .....
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~ 282 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTG 282 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCc
Confidence 777776655432211110 11122334455555432 2223456788899999999986543 36677
Q ss_pred hhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCc
Q 035857 245 TIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQL 324 (404)
Q Consensus 245 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 324 (404)
++.+++.|+.+.+.. .+..+...+|.++.+|+.+.+..+ +......+|.+|.+|+.+.+..+ ++.....+|.+|++|
T Consensus 283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 889999999999964 456677788999999999999865 33345668999999999999754 666777899999999
Q ss_pred cEEEecCccccccCchhhhccccceEEEccCCcc
Q 035857 325 LNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFI 358 (404)
Q Consensus 325 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (404)
+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 360 ~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 360 NNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 99999988654 14667788999988876643
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=4.3e-17 Score=147.54 Aligned_cols=176 Identities=26% Similarity=0.237 Sum_probs=137.4
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccC-CCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFG-NLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
++++++++.+.. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888774 55543 24588899999888866666776 888999999998888877777888888999999998
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhh---cCCccccEEEecCCCCCC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREV---GNMKNLKTLLLNRNSLTG 168 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 168 (404)
|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+ ..+++|++|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88876666678888899999999888887767778888899999999888886555555 568889999999988886
Q ss_pred CCccccccccc--ceEEEecccccc
Q 035857 169 PIPSTLYHLNQ--LRILYLAYNNLV 191 (404)
Q Consensus 169 ~~~~~~~~~~~--L~~l~l~~~~~~ 191 (404)
.....+..++. ++.|++.+|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55556677776 477888887765
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=2.8e-17 Score=141.70 Aligned_cols=168 Identities=23% Similarity=0.292 Sum_probs=90.5
Q ss_pred ccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEc
Q 035857 178 NQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDL 257 (404)
Q Consensus 178 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 257 (404)
.++..++++.+.+.... .+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+....+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444455554444322 34556666666666665552 22 34555666666666666553322 556666666666
Q ss_pred CCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccccc
Q 035857 258 SSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS 337 (404)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 337 (404)
++|++++... +.. ++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 6666554322 112 556666666665543 2 2355556666666666655543 2455556666666666665533
Q ss_pred CchhhhccccceEEEccCCcccc
Q 035857 338 IPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 338 ~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
..+..+++|+.|++++|.+..
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEEC
T ss_pred --HHhccCCCCCEEeCCCCcccC
Confidence 445555666666666665553
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.3e-16 Score=133.17 Aligned_cols=152 Identities=29% Similarity=0.309 Sum_probs=131.1
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
-+.++.+++.+. .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.......|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888877 455443 38899999999999988888899999999999999999877677789999999999999
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLT 167 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 167 (404)
|.+....+..|..+++|+.|++++|.+. .++..+..+++|++|++++|.+.......+..+++|++|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9998666677889999999999999988 56677889999999999999998776677889999999999999876
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=132.31 Aligned_cols=151 Identities=23% Similarity=0.297 Sum_probs=78.2
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCC-cccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIP-LEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
++++++++.+.. +|..+ .+.+++|+++++.+++..+ ..|..+++|++|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 355555555553 33322 2334556666655553322 2345555555555555555544444555555555555555
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSL 166 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 166 (404)
|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 555544444455555555555555555544444455555555555555555544444455555555555555544
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.9e-16 Score=149.01 Aligned_cols=189 Identities=24% Similarity=0.323 Sum_probs=145.3
Q ss_pred CccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEee
Q 035857 131 QLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLN 210 (404)
Q Consensus 131 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 210 (404)
+++.|+++++.+.. ++..+ .++|++|++++|.+.. ++ ..+++|+.|++++|.++... . +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECC
Confidence 88999999988875 44433 3789999999998884 33 45789999999999887633 3 444 89999999
Q ss_pred ccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCC
Q 035857 211 RNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPI 290 (404)
Q Consensus 211 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 290 (404)
+|.++. ++. .+++|+.|++++|.+.. ++. .+++|+.|++++|+++.++. +. ++|+.|++++|.+. .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC-ch
Confidence 998874 444 57889999999998875 443 56889999999999886444 44 89999999999887 55
Q ss_pred CCcccCCCCc-------cEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhcccc
Q 035857 291 PPTIGYLTNL-------TSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIH 347 (404)
Q Consensus 291 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 347 (404)
|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|.+....|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 55 443 67 999999999884 6666777999999999999998878877766543
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=3.7e-17 Score=140.98 Aligned_cols=171 Identities=23% Similarity=0.294 Sum_probs=134.8
Q ss_pred CCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEE
Q 035857 152 NMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDEL 231 (404)
Q Consensus 152 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 231 (404)
.+.++..++++++.+.+.. .+..+++|+.|+++++.+.... .+..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3566777788888776432 5778899999999988877543 67788999999999998874433 7888999999
Q ss_pred EccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCcccc
Q 035857 232 DLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 232 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 311 (404)
++++|++... +. +.. ++|+.|++++|+++.. ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999988753 22 333 8899999999988764 3577889999999999988743 3 6778899999999999888
Q ss_pred CCCCchhhcCCCccEEEecCcccccc
Q 035857 312 SSIPPELMNCSQLLNLVLSHNSLSGS 337 (404)
Q Consensus 312 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 337 (404)
+. ..+..+++|+.|++++|.+...
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6678889999999999988754
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=1.3e-15 Score=122.04 Aligned_cols=132 Identities=20% Similarity=0.174 Sum_probs=91.4
Q ss_pred CCcCEEEcCCCccc-cccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEE
Q 035857 250 TNLTSLDLSSNQLS-GLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLV 328 (404)
Q Consensus 250 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 328 (404)
++|+.|++++|.++ ...+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 23344456667777777777776533 5566777777777777777765666666677888888
Q ss_pred ecCccccccC-chhhhccccceEEEccCCcccccCC---ccccCCCcceEEEccCCeee
Q 035857 329 LSHNSLSGSI-PSEIGNLIHLRQLDLSHNFINGTIP---SQLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 329 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~~~~~~ 383 (404)
+++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888776432 2567777888888888888775544 46777888888888888776
No 126
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.63 E-value=7.4e-14 Score=127.30 Aligned_cols=314 Identities=10% Similarity=0.073 Sum_probs=133.4
Q ss_pred ccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCc
Q 035857 30 IGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLD 109 (404)
Q Consensus 30 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 109 (404)
+....+|+.+.+... ++.+...+|..|.+|+.+.+..+ +..+...+|.++ +|+.+.+..+ +......+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 444456666666543 23355556666666666666543 333445555554 4555555432 222333444443 456
Q ss_pred EEEccCcccCCCChhhhhCCCCccEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEecccc
Q 035857 110 SLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNN 189 (404)
Q Consensus 110 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 189 (404)
.+.+..+. .......|.++ .++.+.+... +......++..+..++.+.+......... ...... .
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~-~~~~~~-----------~ 181 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVA-ENYVLY-----------N 181 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEE-ETTEEE-----------E
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeec-ccceec-----------c
Confidence 65554432 11222223322 3333333221 12222333444444444444332211000 000000 0
Q ss_pred ccCcccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCcc
Q 035857 190 LVGPLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPRE 269 (404)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 269 (404)
........+..+..+..+.+...... .....+..+.+++.+.+... +......++.++..|+.+.+..+ ++.+...+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 182 KNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp TTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred cccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 00011112233334444444332211 22233444555555555433 22233444555555665555443 33344445
Q ss_pred ccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccce
Q 035857 270 VRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLR 349 (404)
Q Consensus 270 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 349 (404)
|.++.+|+.+.+...- ......+|.+|++|+.+.+.++.+......+|.+|.+|+.+.+..+ +..+...+|.+|.+|+
T Consensus 259 F~~~~~l~~i~l~~~i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAKV-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCCC-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhccccccccc-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 5555555555554331 1122334455555555555555444444445555555555555432 3323334455555555
Q ss_pred EEEccCCcccccCCccccCC
Q 035857 350 QLDLSHNFINGTIPSQLGKI 369 (404)
Q Consensus 350 ~L~l~~~~~~~~~~~~~~~~ 369 (404)
.+.+..+ +......+|.+|
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTS
T ss_pred EEEECCc-cCEEchhHhhCC
Confidence 5554332 333344444444
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2.4e-15 Score=120.55 Aligned_cols=132 Identities=25% Similarity=0.177 Sum_probs=71.8
Q ss_pred CcccEEeCCCcccc-CCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEE
Q 035857 34 RNLLKLDLTNNILN-GSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLF 112 (404)
Q Consensus 34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 112 (404)
++|+.|++++|.++ +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 33444455555555555555555433 4455555566666655555543444444555666666
Q ss_pred ccCcccCCCCh-hhhhCCCCccEEEccCCcCCCCCc---hhhcCCccccEEEecCCCCC
Q 035857 113 LDNNNLTGPIP-STLYHLNQLRVLFLAYNNLVGPLP---REVGNMKNLKTLLLNRNSLT 167 (404)
Q Consensus 113 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 167 (404)
+++|.++.... ..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66665553221 445556666666666666554333 35556666666666666544
No 128
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.61 E-value=1.4e-13 Score=125.43 Aligned_cols=319 Identities=12% Similarity=0.067 Sum_probs=208.7
Q ss_pred ccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCc
Q 035857 53 EFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQL 132 (404)
Q Consensus 53 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 132 (404)
.+....+|+.+.+.+ .+..+...+|.+|.+|+.+++..+ +......+|.++ +|+.+.+..+ +.......|... +|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 355567888888865 345566678888888888888654 444556677776 5776666543 232333344443 67
Q ss_pred cEEEccCCcCCCCCchhhcCCccccEEEecCCCCCCCCcccccccccceEEEeccccccCcccccccCccccCeEEeecc
Q 035857 133 RVLFLAYNNLVGPLPREVGNMKNLKTLLLNRNSLTGPIPSTLYHLNQLRILYLAYNNLVGPLSKEVGNLKNLDRLLLNRN 212 (404)
Q Consensus 133 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (404)
+.+.+... +......+|..+ +++.+.+... +.......+..+..++.+.+............ ... +
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-~~~----------~ 181 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-VLY----------N 181 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETT-EEE----------E
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccc-eec----------c
Confidence 77776543 222333344443 4555544432 22223344555566666555433211110000 000 0
Q ss_pred ccCcccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCC
Q 035857 213 NLTGSIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPP 292 (404)
Q Consensus 213 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 292 (404)
.. ......+..+..+..+.+...... ....++..+..|+.+.+... +..+....+.++..|+.+.+..+ +......
T Consensus 182 ~~-~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~ 257 (379)
T 4h09_A 182 KN-KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF 257 (379)
T ss_dssp TT-SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT
T ss_pred cc-cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc
Confidence 00 011223445566777777654322 45566778899999999764 44466778888999999999876 3335566
Q ss_pred cccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCcc
Q 035857 293 TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNV 372 (404)
Q Consensus 293 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 372 (404)
+|..+.+|+.+.+... +......+|..|++|+.+.+.++.+..+...+|.+|.+|+.+.+..+ +......+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 7889999999999764 55566678999999999999999888777889999999999999654 666778899999999
Q ss_pred eEEEccCCeeeeecCCcccccCcce
Q 035857 373 SEVDVSKNNLSGVIPKSVLRVPGLK 397 (404)
Q Consensus 373 ~~l~l~~~~~~~~~~~~~~~~~~l~ 397 (404)
+++.+..+ ++......|.+|..++
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSITK 359 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSCCC
T ss_pred CEEEECCc-cCEEchhHhhCCCCCc
Confidence 99999755 7777788999998766
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.5e-15 Score=117.85 Aligned_cols=126 Identities=23% Similarity=0.210 Sum_probs=56.1
Q ss_pred CcccEEeCCCcccc-CCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCccccCCCccccCCCCCCcEEE
Q 035857 34 RNLLKLDLTNNILN-GSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLNQLSGRLPQEVGNLKNLDSLF 112 (404)
Q Consensus 34 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 112 (404)
++|+.|++++|.++ +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+....|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 33444444444443 23333344444444444444444322 3344444444444444444433444444444555555
Q ss_pred ccCcccCCC-ChhhhhCCCCccEEEccCCcCCCCCc---hhhcCCccccEEEe
Q 035857 113 LDNNNLTGP-IPSTLYHLNQLRVLFLAYNNLVGPLP---REVGNMKNLKTLLL 161 (404)
Q Consensus 113 l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 161 (404)
+++|.++.. .+..+..+++|++|++++|.+....+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555444431 11334445555555555555443322 23444555555544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.1e-15 Score=117.28 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=66.7
Q ss_pred CCcCEEEcCCCccc-cccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEE
Q 035857 250 TNLTSLDLSSNQLS-GLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLV 328 (404)
Q Consensus 250 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 328 (404)
++|+.|++++|.++ ...+..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 22333344445555555555554422 3445555666666666655544444444556666666
Q ss_pred ecCcccccc-CchhhhccccceEEEccCCcccccCC---ccccCCCcceEEEcc
Q 035857 329 LSHNSLSGS-IPSEIGNLIHLRQLDLSHNFINGTIP---SQLGKITNVSEVDVS 378 (404)
Q Consensus 329 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~l~l~ 378 (404)
+++|.+.+. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665532 22455556666666666666654443 355566666666654
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1e-14 Score=119.39 Aligned_cols=129 Identities=27% Similarity=0.334 Sum_probs=91.7
Q ss_pred CEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCc-cccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCC
Q 035857 229 DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPR-EVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGY 307 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 307 (404)
+.++++++.+. .+|..+ .+.++.|++++|.+....+. .+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67777777775 334333 23777888888777765543 467777777777777777766666777777777777777
Q ss_pred ccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcccc
Q 035857 308 NQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFING 360 (404)
Q Consensus 308 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 360 (404)
|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 77776666667777777777777777776667777777777777777777663
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=2.3e-17 Score=157.22 Aligned_cols=184 Identities=22% Similarity=0.211 Sum_probs=136.0
Q ss_pred cCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCc-------------cCCCChhhhccCCCcCEEE-cCCCcccc
Q 035857 199 GNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNR-------------LDGPIPPTIGNLTNLTSLD-LSSNQLSG 264 (404)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 264 (404)
..++.|+.|++++|.+. .+|..++.+++|++|+++++. .....+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45667777777777665 455566666777777765543 2223455667777777777 44443321
Q ss_pred ccC-----ccccC--CCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCcccccc
Q 035857 265 LLP-----REVRN--LKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGS 337 (404)
Q Consensus 265 ~~~-----~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 337 (404)
... ..+.. ...|+.|++++|.+. .+|. +..+++|+.|++++|.+. ..|..+..+++|+.|++++|.+..
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 110 01111 136899999999987 4565 888999999999999998 667889999999999999999985
Q ss_pred CchhhhccccceEEEccCCcccccC-CccccCCCcceEEEccCCeeeeecCC
Q 035857 338 IPSEIGNLIHLRQLDLSHNFINGTI-PSQLGKITNVSEVDVSKNNLSGVIPK 388 (404)
Q Consensus 338 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~ 388 (404)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++..|.
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 56 7889999999999999998776 88999999999999999999876653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=116.39 Aligned_cols=126 Identities=26% Similarity=0.329 Sum_probs=60.2
Q ss_pred CEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCc
Q 035857 229 DELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYN 308 (404)
Q Consensus 229 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 308 (404)
+.++++++.+.. +|..+ .++|+.|++++|+++.+ +..+..+++|+.|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 345555555542 22222 23555555555555422 244445555555555555554333344445555555555555
Q ss_pred cccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcc
Q 035857 309 QLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFI 358 (404)
Q Consensus 309 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (404)
.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55444444444455555555555555433333444444555555554444
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=3.1e-14 Score=116.55 Aligned_cols=132 Identities=22% Similarity=0.287 Sum_probs=115.5
Q ss_pred CEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCC-cccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecC
Q 035857 253 TSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPP-TIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSH 331 (404)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 331 (404)
+.++++++.++.++. .+ .+++++|++++|.+....+. .+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999998875543 22 24899999999999755443 488999999999999999988888999999999999999
Q ss_pred ccccccCchhhhccccceEEEccCCcccccCCccccCCCcceEEEccCCeeeeecC
Q 035857 332 NSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITNVSEVDVSKNNLSGVIP 387 (404)
Q Consensus 332 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 387 (404)
|.+....+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++....+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998888889999999999999999999889999999999999999999985443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.8e-14 Score=114.48 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=56.5
Q ss_pred CcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEc
Q 035857 274 KYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDL 353 (404)
Q Consensus 274 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 353 (404)
++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34444444444444333333444555555555555554444444455555555555555555444444455555555555
Q ss_pred cCCcccccCCccccCCCcceEEEccCCeeee
Q 035857 354 SHNFINGTIPSQLGKITNVSEVDVSKNNLSG 384 (404)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 384 (404)
++|.+.+..+..+..+++|++|++++|++..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555554444445555556666666665553
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.2e-16 Score=150.44 Aligned_cols=122 Identities=29% Similarity=0.319 Sum_probs=89.9
Q ss_pred CCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcC
Q 035857 227 LLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLG 306 (404)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 306 (404)
.|+.|++++|.+.. +|. +..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+++ +| .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47778888887764 444 777788888888888877 445677778888888888888764 45 67778888888888
Q ss_pred CccccCCC-CchhhcCCCccEEEecCccccccCch---hhhccccceEEEc
Q 035857 307 YNQLNSSI-PPELMNCSQLLNLVLSHNSLSGSIPS---EIGNLIHLRQLDL 353 (404)
Q Consensus 307 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l 353 (404)
+|.+.+.. |..+..+++|+.|++++|.+.+..+. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88887665 77788888888888888888754332 2344778888764
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.1e-14 Score=114.15 Aligned_cols=132 Identities=24% Similarity=0.243 Sum_probs=67.5
Q ss_pred ccCCCCccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCc
Q 035857 6 IGALSKLEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLT 85 (404)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 85 (404)
+.++++|++|++++|.+.. ++......++|++|++++|.+++. ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4555666666666666653 233222233666666666665532 4455556666666666655544333345555666
Q ss_pred EEEccCccccCCCcc--ccCCCCCCcEEEccCcccCCCChh---hhhCCCCccEEEccCCc
Q 035857 86 SLNLSLNQLSGRLPQ--EVGNLKNLDSLFLDNNNLTGPIPS---TLYHLNQLRVLFLAYNN 141 (404)
Q Consensus 86 ~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~ 141 (404)
+|++++|.+. .++. .+..+++|+.|++++|.+...... .+..+++|+.|+++++.
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 6666665554 3333 455555555555555555422111 24444455555444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3.1e-14 Score=114.91 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=54.6
Q ss_pred cCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCccccccCch--hhhccccceEEE
Q 035857 275 YLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPS--EIGNLIHLRQLD 352 (404)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~ 352 (404)
+|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444322 33444555555555555555433333455555666666665554 2332 455556666666
Q ss_pred ccCCcccccCCc----cccCCCcceEEEccCCeee
Q 035857 353 LSHNFINGTIPS----QLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 353 l~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~ 383 (404)
+++|++.. .+. .+..+++|+.|++++|...
T Consensus 120 l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666552 233 2555666666666666543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.8e-13 Score=111.89 Aligned_cols=125 Identities=29% Similarity=0.377 Sum_probs=61.7
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
++++++++.+. .+|..+ .++|++|+++++.++ ..|..|..+++|++|++++|.+....+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 233322 235555555555554 33445555555555555555555444445555555555555555
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCc
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNN 141 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 141 (404)
.+....+.+|..+++|+.|++++|.++......|..+++|+.|++.+|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 5554444445555555555555555443333334444444444444443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.5e-14 Score=142.09 Aligned_cols=118 Identities=29% Similarity=0.305 Sum_probs=60.1
Q ss_pred ccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCc
Q 035857 221 TIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNL 300 (404)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 300 (404)
.+..++.|+.|++++|.+. .++..+..+++|+.|+|++|.++ ..+..+..+++|+.|++++|.+. .+|..+..+++|
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 295 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295 (727)
T ss_dssp ---CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred hhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence 3444555555555555554 23333335555555555555555 33344455555555555555554 445555555555
Q ss_pred cEEEcCCccccCCCCchhhcCCCccEEEecCccccccCchhh
Q 035857 301 TSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLSGSIPSEI 342 (404)
Q Consensus 301 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 342 (404)
++|++++|.+. .+|..|..+++|+.|++++|.+....+..+
T Consensus 296 ~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 296 KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 55555555554 334445555555555555555554444444
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=5.7e-13 Score=107.54 Aligned_cols=127 Identities=27% Similarity=0.322 Sum_probs=62.1
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
+.++++++++.. +|.. ..++|+.|+++++.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 455555555552 2222 1245556666655555444444555555555555555555444444455555555555555
Q ss_pred cccCCCccccCCCCCCcEEEccCcccCCCChhhhhCCCCccEEEccCCcC
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLTGPIPSTLYHLNQLRVLFLAYNNL 142 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 142 (404)
.+....+..+..+++|+.|++++|.++......+..+++|++|++++|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 55433333444455555555555544433333333444444444444433
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.1e-15 Score=144.04 Aligned_cols=145 Identities=28% Similarity=0.345 Sum_probs=110.0
Q ss_pred CChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhc
Q 035857 241 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMN 320 (404)
Q Consensus 241 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 320 (404)
..+..+..++.|+.|++++|.+..+.. .+..+++|++|++++|.+. .+|..+..+++|++|+|++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 446677888999999999999885444 3447899999999999987 77888889999999999999988 56788889
Q ss_pred CCCccEEEecCccccccCchhhhccccceEEEccCCcccccCCccccCCCc-ceEEEccCCeeeeecCCc
Q 035857 321 CSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFINGTIPSQLGKITN-VSEVDVSKNNLSGVIPKS 389 (404)
Q Consensus 321 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~ 389 (404)
+++|++|++++|.+. .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|..
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 999999999999887 67777999999999999999998877776654322 223556666666555543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.3e-15 Score=123.13 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=97.3
Q ss_pred ChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcC
Q 035857 242 IPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNC 321 (404)
Q Consensus 242 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 321 (404)
.+..+..+++|+.|++++|.+... + .+..+++|+.|++++|.+. .++..+..+++|++|++++|.+.+. ..+..+
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l 114 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKL 114 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHH
T ss_pred hhHHHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccC
Confidence 344778888888888888888764 3 6677788888888888876 5566666667888888888877753 256777
Q ss_pred CCccEEEecCccccccCc-hhhhccccceEEEccCCcccccCCc----------cccCCCcceEEEccCCeee
Q 035857 322 SQLLNLVLSHNSLSGSIP-SEIGNLIHLRQLDLSHNFINGTIPS----------QLGKITNVSEVDVSKNNLS 383 (404)
Q Consensus 322 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~~~~~ 383 (404)
++|+.|++++|.+.+... ..+..+++|+.|++++|++.+..|. .+..+++|+.|+ +++++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 888888888888774322 3567788888888888877655443 266777888776 66665
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=2.1e-15 Score=124.24 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=70.0
Q ss_pred ccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCc
Q 035857 221 TIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNL 300 (404)
Q Consensus 221 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 300 (404)
.+..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.++. .+..+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44555566666666665553 33 55555666666666665553 23334444566666666665542 22 34555666
Q ss_pred cEEEcCCccccCCCC-chhhcCCCccEEEecCccccccCch----------hhhccccceEEEccCCccc
Q 035857 301 TSLNLGYNQLNSSIP-PELMNCSQLLNLVLSHNSLSGSIPS----------EIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 301 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~~~ 359 (404)
++|++++|.+.+... ..+..+++|++|++++|.+....+. .+..+++|+.|+ +++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666665553221 2455556666666666655433222 245556666554 44443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.1e-12 Score=101.55 Aligned_cols=104 Identities=27% Similarity=0.255 Sum_probs=54.3
Q ss_pred CEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCc
Q 035857 253 TSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
+.++++++.++.++.. + .++|+.|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4556665555543221 1 255555555555555444445555555555555555555444444455555555555555
Q ss_pred cccccCchhhhccccceEEEccCCccc
Q 035857 333 SLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
.+....+..|..+++|+.|++++|++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555443444555555555555555544
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=9.5e-12 Score=99.78 Aligned_cols=104 Identities=23% Similarity=0.214 Sum_probs=69.8
Q ss_pred CEEEcCCCccccccCccccCCCcCcEEEccCCccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCc
Q 035857 253 TSLDLSSNQLSGLLPREVRNLKYLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 253 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
+.++++++.++.++. .+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 567777777664433 22 267777777777776555666777777777777777777655555667777777777777
Q ss_pred cccccCchhhhccccceEEEccCCccc
Q 035857 333 SLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
.+....+..+..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 776544445667777777777777665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.6e-14 Score=127.48 Aligned_cols=183 Identities=21% Similarity=0.178 Sum_probs=118.2
Q ss_pred ccccCeEEeeccccCcccCcc----cC-CCCCCCEEEccCCccCCCChhhh-ccCCCcCEEEcCCCccccccCccc----
Q 035857 201 LKNLDRLLLNRNNLTGSIPST----IG-YLNLLDELDLSHNRLDGPIPPTI-GNLTNLTSLDLSSNQLSGLLPREV---- 270 (404)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~----~~-~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~---- 270 (404)
.+.|+.|++++|.++...... +. .+++|++|++++|.+.......+ ..+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999998886432222 22 23689999999988754332222 345678899999988875544433
Q ss_pred -cCCCcCcEEEccCCccCCC----CCCcccCCCCccEEEcCCccccCCC----CchhhcCCCccEEEecCccccccCc--
Q 035857 271 -RNLKYLASLSLNGNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSI----PPELMNCSQLLNLVLSHNSLSGSIP-- 339 (404)
Q Consensus 271 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~-- 339 (404)
...++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.+ ...+...++|++|++++|.+.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2357888888888887532 3334456788888888888877543 3345567788888888888875433
Q ss_pred --hhhhccccceEEEccCCcccccCCccccCC---Cc--ceEEE--ccCCeee
Q 035857 340 --SEIGNLIHLRQLDLSHNFINGTIPSQLGKI---TN--VSEVD--VSKNNLS 383 (404)
Q Consensus 340 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~--L~~l~--l~~~~~~ 383 (404)
..+..+++|++|++++|.++......+... .. |+.+. +.++.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 334556888888888888876555555332 11 55565 5555554
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=2.6e-11 Score=96.91 Aligned_cols=105 Identities=32% Similarity=0.344 Sum_probs=63.1
Q ss_pred ccEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 12 LEELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
.++++++++.+.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4566666666663 44333 25666666666666655566666666666666666666655555556666666666666
Q ss_pred ccccCCCccccCCCCCCcEEEccCcccC
Q 035857 92 NQLSGRLPQEVGNLKNLDSLFLDNNNLT 119 (404)
Q Consensus 92 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 119 (404)
|.+....+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665444445666666666666666554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=6.1e-14 Score=126.66 Aligned_cols=183 Identities=21% Similarity=0.155 Sum_probs=109.4
Q ss_pred cccceEEEeccccccCccccccc-----CccccCeEEeeccccCcccCcc-cCCCCCCCEEEccCCccCCCChhhh----
Q 035857 177 LNQLRILYLAYNNLVGPLSKEVG-----NLKNLDRLLLNRNNLTGSIPST-IGYLNLLDELDLSHNRLDGPIPPTI---- 246 (404)
Q Consensus 177 ~~~L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l---- 246 (404)
.+.|+.+++++|.++......+. ..++|+.|++++|.+++..... ...+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677888887776544333322 2267888888888776322222 2234577888888887754333333
Q ss_pred -ccCCCcCEEEcCCCccccccC----ccccCCCcCcEEEccCCccCCC----CCCcccCCCCccEEEcCCccccCCCCc-
Q 035857 247 -GNLTNLTSLDLSSNQLSGLLP----REVRNLKYLASLSLNGNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIPP- 316 (404)
Q Consensus 247 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~- 316 (404)
...+.|+.|++++|.+++... ..+...++|++|++++|.+.+. +...+..+++|++|++++|.+++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 245778888888887764322 3335567788888888876532 233455667788888888877653332
Q ss_pred ---hhhcCCCccEEEecCccccccCchhhhcccc-----ceEEE--ccCCccc
Q 035857 317 ---ELMNCSQLLNLVLSHNSLSGSIPSEIGNLIH-----LRQLD--LSHNFIN 359 (404)
Q Consensus 317 ---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----L~~L~--l~~~~~~ 359 (404)
.+...++|++|++++|.+.+.....+..... |+.+. +.++.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3345678888888888877655555543211 55555 5455443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=4.5e-11 Score=95.79 Aligned_cols=104 Identities=30% Similarity=0.378 Sum_probs=53.4
Q ss_pred cEEEcCCCcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccCc
Q 035857 13 EELDLSYNSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSLN 92 (404)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 92 (404)
+.++++++.+. .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+.......|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555554 3333322 45555555555555444555555555555555555555444444455555555555555
Q ss_pred cccCCCccccCCCCCCcEEEccCcccC
Q 035857 93 QLSGRLPQEVGNLKNLDSLFLDNNNLT 119 (404)
Q Consensus 93 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 119 (404)
.+....+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333555555555555555443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.07 E-value=6.2e-11 Score=106.10 Aligned_cols=179 Identities=17% Similarity=0.264 Sum_probs=96.5
Q ss_pred ccCccccCeEEeeccccCc---------ccCcccCCCCCCCEEEccCCccCCCChhhhccCCCcCEEEcCCCccccccCc
Q 035857 198 VGNLKNLDRLLLNRNNLTG---------SIPSTIGYLNLLDELDLSHNRLDGPIPPTIGNLTNLTSLDLSSNQLSGLLPR 268 (404)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 268 (404)
...+++|+.|.+.+....+ .+...+..+|+|++|.++++... ..+. +. .++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 3456788888886543210 12233455677888888776311 1121 22 67788888777766543333
Q ss_pred ccc--CCCcCcEEEccCC--c-cCC----CCCCcc--cCCCCccEEEcCCccccCCCCchhh---cCCCccEEEecCccc
Q 035857 269 EVR--NLKYLASLSLNGN--N-LIG----PIPPTI--GYLTNLTSLNLGYNQLNSSIPPELM---NCSQLLNLVLSHNSL 334 (404)
Q Consensus 269 ~~~--~~~~L~~L~l~~~--~-~~~----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 334 (404)
.+. .+|+|++|+++.+ . ..+ .+...+ ..+|+|++|++.+|.+.+..+..+. .+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 332 5677777777531 1 110 111112 2467777777777766543322222 356777777777766
Q ss_pred cccCc----hhhhccccceEEEccCCcccccCCccccC-CCcceEEEccCCe
Q 035857 335 SGSIP----SEIGNLIHLRQLDLSHNFINGTIPSQLGK-ITNVSEVDVSKNN 381 (404)
Q Consensus 335 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~ 381 (404)
.+... ..+..+++|+.|++++|.++......+.. + ..++++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 65322 22345677777777777666443333332 1 2456666554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=9e-10 Score=98.89 Aligned_cols=102 Identities=23% Similarity=0.216 Sum_probs=53.3
Q ss_pred EEcCCC-ccccccCccccCCCcCcEEEccC-CccCCCCCCcccCCCCccEEEcCCccccCCCCchhhcCCCccEEEecCc
Q 035857 255 LDLSSN-QLSGLLPREVRNLKYLASLSLNG-NNLIGPIPPTIGYLTNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHN 332 (404)
Q Consensus 255 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 332 (404)
++.+++ .++.+ |. +..+++|+.|++++ |.+....+..|..+++|+.|+|++|.+....+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 44432 22 55555566666654 5554333345555556666666666555555555555555566666655
Q ss_pred cccccCchhhhccccceEEEccCCccc
Q 035857 333 SLSGSIPSEIGNLIHLRQLDLSHNFIN 359 (404)
Q Consensus 333 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 359 (404)
.+....+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55533333333333 555555555544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=1.2e-10 Score=104.35 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=114.8
Q ss_pred ccccccceEEEeccccccC---------cccccccCccccCeEEeeccccCcccCcccCCCCCCCEEEccCCccCCCChh
Q 035857 174 LYHLNQLRILYLAYNNLVG---------PLSKEVGNLKNLDRLLLNRNNLTGSIPSTIGYLNLLDELDLSHNRLDGPIPP 244 (404)
Q Consensus 174 ~~~~~~L~~l~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 244 (404)
...+++|+.|.+....... .....+..+|+|+.|.+.++.-. ..+. + ..++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4467899999886532210 12234466789999999887322 2222 3 378999999998877543333
Q ss_pred hhc--cCCCcCEEEcCCC--cc-ccc----cCccc--cCCCcCcEEEccCCccCCCCCCcc---cCCCCccEEEcCCccc
Q 035857 245 TIG--NLTNLTSLDLSSN--QL-SGL----LPREV--RNLKYLASLSLNGNNLIGPIPPTI---GYLTNLTSLNLGYNQL 310 (404)
Q Consensus 245 ~l~--~~~~L~~L~l~~~--~~-~~~----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 310 (404)
.+. .+|+|+.|+++.+ .. .+. ....+ ..+|+|+.|.+.+|.+.+..+..+ ..+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 443 6899999998532 11 110 00122 347899999999888753221111 2578999999999988
Q ss_pred cCCCCc----hhhcCCCccEEEecCccccccCchhhhccccceEEEccCCc
Q 035857 311 NSSIPP----ELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNF 357 (404)
Q Consensus 311 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 357 (404)
.+.+.. .+..+++|+.|++++|.+.+.....+...- ...+++++++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 764332 335678999999999988766555555411 3557777765
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=1.5e-09 Score=97.39 Aligned_cols=104 Identities=25% Similarity=0.294 Sum_probs=88.4
Q ss_pred cEEEcCCC-cccccCcccccCCCcccEEeCCC-ccccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEcc
Q 035857 13 EELDLSYN-SLTGTIPAEIGSLRNLLKLDLTN-NILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLS 90 (404)
Q Consensus 13 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 90 (404)
..++++++ ++. .+|. +..+++|+.|++++ |.+++..+..|..+++|++|++++|.+....+..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45788887 777 4777 88899999999996 99987777889999999999999999988888889999999999999
Q ss_pred CccccCCCccccCCCCCCcEEEccCcccC
Q 035857 91 LNQLSGRLPQEVGNLKNLDSLFLDNNNLT 119 (404)
Q Consensus 91 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 119 (404)
+|.+....+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999855555666655 999999998876
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.79 E-value=2e-09 Score=84.75 Aligned_cols=86 Identities=6% Similarity=0.006 Sum_probs=60.4
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCcc-ccccCchhhhc----cccceEEEccCC-cccccCCccccCCCc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNS-LSGSIPSEIGN----LIHLRQLDLSHN-FINGTIPSQLGKITN 371 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 371 (404)
..|+.||+++|.+++.+...+..|++|+.|++++|. +++.....+.. +++|+.|++++| .+++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777776666666777788888888874 55555555554 357888888887 477666666777788
Q ss_pred ceEEEccCCe-ee
Q 035857 372 VSEVDVSKNN-LS 383 (404)
Q Consensus 372 L~~l~l~~~~-~~ 383 (404)
|++|++++|+ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888876 44
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.55 E-value=1.8e-08 Score=79.32 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=46.4
Q ss_pred cCcEEEccCCccCCCCCCcccCCCCccEEEcCCcc-ccCCCCchhhc----CCCccEEEecCcc-ccccCchhhhccccc
Q 035857 275 YLASLSLNGNNLIGPIPPTIGYLTNLTSLNLGYNQ-LNSSIPPELMN----CSQLLNLVLSHNS-LSGSIPSEIGNLIHL 348 (404)
Q Consensus 275 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 348 (404)
+|+.|++++|.+++.....+..+++|++|++++|. +++.....+.. +++|++|++++|. +++.....+..|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544433344556666666666663 44433333433 2356666666663 555555555666677
Q ss_pred eEEEccCCc
Q 035857 349 RQLDLSHNF 357 (404)
Q Consensus 349 ~~L~l~~~~ 357 (404)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777776663
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=9.5e-09 Score=83.02 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=32.4
Q ss_pred hhhccCCCcCEEEcCCC-ccccccC----ccccCCCcCcEEEccCCccCCC----CCCcccCCCCccEEEcCCcccc
Q 035857 244 PTIGNLTNLTSLDLSSN-QLSGLLP----REVRNLKYLASLSLNGNNLIGP----IPPTIGYLTNLTSLNLGYNQLN 311 (404)
Q Consensus 244 ~~l~~~~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 311 (404)
..+...+.|++|++++| .+.+... ..+...++|++|++++|.+.+. +...+...++|++|++++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455667777777776 6554322 2223345555555555554321 1122223344444555444444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=4.1e-08 Score=79.24 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=59.4
Q ss_pred ccCCCCCCCEEEccCC-ccCCC----ChhhhccCCCcCEEEcCCCccccccC----ccccCCCcCcEEEccCCccCCC--
Q 035857 221 TIGYLNLLDELDLSHN-RLDGP----IPPTIGNLTNLTSLDLSSNQLSGLLP----REVRNLKYLASLSLNGNNLIGP-- 289 (404)
Q Consensus 221 ~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-- 289 (404)
.+...++|++|++++| .+... ...++...+.|++|++++|.+.+... ..+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666677777666 55432 22334555667777776666654322 2233346667777776666532
Q ss_pred --CCCcccCCCCccEEEc--CCccccCCCC----chhhcCCCccEEEecCcccc
Q 035857 290 --IPPTIGYLTNLTSLNL--GYNQLNSSIP----PELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 290 --~~~~~~~~~~L~~L~l--~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~ 335 (404)
+...+...++|++|++ ++|.+.+.+. ..+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2333444555666666 5555543222 12223345555555555443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=5e-07 Score=76.63 Aligned_cols=82 Identities=30% Similarity=0.363 Sum_probs=48.4
Q ss_pred CCCCCCcEEEeCCcccccc--CCCcccCCCCCcEEEccCccccCC-CccccCCCCCCcEEEccCcccCCCCh-------h
Q 035857 55 GNLKDLDELRLQGNKLDGL--IPSSIGNLTNLTSLNLSLNQLSGR-LPQEVGNLKNLDSLFLDNNNLTGPIP-------S 124 (404)
Q Consensus 55 ~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~-------~ 124 (404)
..+++|+.|++++|.+... ++..+..+++|++|++++|.+... ..+.+..+ +|+.|++.+|.+....+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3456777777777766542 234445667777777777776532 11223333 77777777776653221 2
Q ss_pred hhhCCCCccEEEc
Q 035857 125 TLYHLNQLRVLFL 137 (404)
Q Consensus 125 ~~~~l~~L~~L~l 137 (404)
.+..+|+|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556778887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=9.3e-06 Score=68.86 Aligned_cols=13 Identities=31% Similarity=0.274 Sum_probs=6.1
Q ss_pred cceEEEccCCccc
Q 035857 347 HLRQLDLSHNFIN 359 (404)
Q Consensus 347 ~L~~L~l~~~~~~ 359 (404)
+|++|++++|++.
T Consensus 221 ~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 221 KLEELWLDGNSLC 233 (267)
T ss_dssp CCSEEECTTSTTG
T ss_pred CcceEEccCCcCc
Confidence 4444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.09 E-value=0.00019 Score=57.50 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=8.5
Q ss_pred hccCCCcCEEEcCCCccc
Q 035857 246 IGNLTNLTSLDLSSNQLS 263 (404)
Q Consensus 246 l~~~~~L~~L~l~~~~~~ 263 (404)
+...+.|+.|+|++|++.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 334444555555554444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.08 E-value=0.00013 Score=58.54 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=48.3
Q ss_pred hhccCCCcCEEEcCCC-cccccc----CccccCCCcCcEEEccCCccCCC----CCCcccCCCCccEEEcCCccccCCCC
Q 035857 245 TIGNLTNLTSLDLSSN-QLSGLL----PREVRNLKYLASLSLNGNNLIGP----IPPTIGYLTNLTSLNLGYNQLNSSIP 315 (404)
Q Consensus 245 ~l~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~ 315 (404)
.+...+.|+.|+++++ ++.+.. ...+..-..|+.|++++|.+.+. +...+...+.|++|+|++|.+.+.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455677888888774 655332 23334446677777777766532 22233445666666666666654333
Q ss_pred ch----hhcCCCccEEEecCc
Q 035857 316 PE----LMNCSQLLNLVLSHN 332 (404)
Q Consensus 316 ~~----~~~~~~L~~L~l~~~ 332 (404)
.. +..-+.|++|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 22 223345666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.0058 Score=45.50 Aligned_cols=55 Identities=27% Similarity=0.342 Sum_probs=29.9
Q ss_pred EEEcCCcccc-CCCCchhhcCCCccEEEecCccccccCchhhhccccceEEEccCCcc
Q 035857 302 SLNLGYNQLN-SSIPPELMNCSQLLNLVLSHNSLSGSIPSEIGNLIHLRQLDLSHNFI 358 (404)
Q Consensus 302 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 358 (404)
.++.++..++ ...|..+. ++|+.|+|++|.+....+..|..+++|+.|+|.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 12232222 3566666666666654445556666666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.74 E-value=0.028 Score=41.69 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=23.6
Q ss_pred CCccEEEcCCccccCCCCchhhcCCCccEEEecCcccc
Q 035857 298 TNLTSLNLGYNQLNSSIPPELMNCSQLLNLVLSHNSLS 335 (404)
Q Consensus 298 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 335 (404)
+++++|+|++|.++......|..+++|+.|+|.+|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 35666666666666555555666666666666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.72 E-value=0.45 Score=33.18 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=27.5
Q ss_pred CcccccCcccccCCCcccEEeCCCccccCCCCcccCCCCCCcEEEeCCc
Q 035857 20 NSLTGTIPAEIGSLRNLLKLDLTNNILNGSIPLEFGNLKDLDELRLQGN 68 (404)
Q Consensus 20 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 68 (404)
..++.+-..+|.+|.+|+.+.+...- +.+...+|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34445555566666666666666543 2355556666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.62 E-value=1.8 Score=30.10 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=30.5
Q ss_pred cccCCCCcccCCCCCCcEEEeCCccccccCCCcccCCCCCcEEEccC
Q 035857 45 ILNGSIPLEFGNLKDLDELRLQGNKLDGLIPSSIGNLTNLTSLNLSL 91 (404)
Q Consensus 45 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 91 (404)
.++.+...+|..|..|+.+.+..+ +..+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344556667777777777777654 3335566777777777777755
Done!