BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035860
         (440 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: C44s Nox
 pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: C44s Nox
 pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: C44s Nox With Azide
 pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: C44s Nox With Azide
          Length = 490

 Score = 31.6 bits (70), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 213 MGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYG 272
           +G+D+A   Y   Q    IE  ++ + +  +   DS RI+ + +A R DVS    + +  
Sbjct: 394 LGFDAAVTEYTDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLA 453

Query: 273 DMHWISFDQNNIHTCIFSFDFNK 295
               ++ ++  +    F   FNK
Sbjct: 454 IQEGVTIEKLALTDIFFLPHFNK 476


>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: Wild-Type Nox
 pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
           Oxidase: Wild-Type Nox
          Length = 490

 Score = 31.6 bits (70), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 38/83 (45%)

Query: 213 MGYDSATGTYKIVQSYPVIELSDYKIAVYTLGKDDSWRIISSSLALRPDVSYEFGVSAYG 272
           +G+D+A   Y   Q    IE  ++ + +  +   DS RI+ + +A R DVS    + +  
Sbjct: 394 LGFDAAVTEYTDNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLA 453

Query: 273 DMHWISFDQNNIHTCIFSFDFNK 295
               ++ ++  +    F   FNK
Sbjct: 454 IQEGVTIEKLALTDIFFLPHFNK 476


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,161,754
Number of Sequences: 62578
Number of extensions: 688412
Number of successful extensions: 1162
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 2
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)